CA2507664A1 - Novel neomycin-phosphotransferase-genes and methods for the selection of recombinant cells producing high levels of a desired gene product - Google Patents

Novel neomycin-phosphotransferase-genes and methods for the selection of recombinant cells producing high levels of a desired gene product Download PDF

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CA2507664A1
CA2507664A1 CA002507664A CA2507664A CA2507664A1 CA 2507664 A1 CA2507664 A1 CA 2507664A1 CA 002507664 A CA002507664 A CA 002507664A CA 2507664 A CA2507664 A CA 2507664A CA 2507664 A1 CA2507664 A1 CA 2507664A1
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gene
mammalian cells
modified neomycin
seq
phosphotransferase
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French (fr)
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CA2507664C (en
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Barbara Enenkel
Kerstin Sautter
Ralf Otto
Jurgen Fieder
Klaus Bergemann
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Boehringer Ingelheim Pharma GmbH and Co KG
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/12Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • C12N9/1205Phosphotransferases with an alcohol group as acceptor (2.7.1), e.g. protein kinases
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/65Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression using markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y207/00Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/01Phosphotransferases with an alcohol group as acceptor (2.7.1)
    • C12Y207/01095Kanamycin kinase (2.7.1.95), i.e. neomycin-kanamycin phosphotransferase

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  • Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
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  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Plant Pathology (AREA)
  • Medicinal Chemistry (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The invention relates to novel modified neomycin phosphotransferase genes and the use thereof in a selection method for high-producing recombinant cells.
The invention also relates to expression vectors containing a modified neomycin phosphotransferase gene and a gene of interest in a functional bond with a heterologous promoter, and a method for producing heterologous gene products by using said expression vectors.

Claims (43)

1. Modified neomycin phosphotransferase gene characterised in that the modified neomycin phosphotransferase gene at amino acid position 91, 198 and/or 240 in relation to the wild-type gene codes for a different amino acid than the wild-type neomycin phosphotransferase gene.
2. Modified neomycin phosphotransferase gene according to claim 1, characterised in that the modified neomycin phosphotransferase which is encoded by the neomycin phosphotransferase gene has a lower enzyme activity than the wild-type neomycin phosphotransferase.
3. Modified neomycin phosphotransferase gene according to claim 1 or 2 characterised in that the modified neomycin phosphotransferase gene compared with the wild-type gene codes for alanine at amino acid position 91 in relation to the wild-type gene, for glycine at amino acid position 198, and/or for isoleucine at amino acid position 240.
4. Modified neomycin phosphotransferase gene according to one of claims 1 to 3 characterised in that the modified neomycin phosphotransferase gene codes for a polypeptide with an amino acid sequence according to SEQ
ID NO:6, SEQ SEQ ID NO:8 or SEQ ID NO:18.
5. Modified neomycin phosphotransferase gene according to one of claims 1 to 4 containing or consisting of a sequence according to SEQ ID NO:5, SEQ ID NO:7 or SEQ ID NO:17.
6. Modified neomycin phosphotransferase gene characterised in that the modified neomycin phosphotransferase gene compared with the wild-type gene codes for glycine at amino acid position 182 in relation to the wild-type gene, for alanine or valine at amino acid position 227 and/or for glycine at amino acid position 261.
7. Modified neomycin phosphotransferase gene according to claim 6 characterised in that the modified neomycin phosphotransferase gene codes for a polypeptide with an amino acid sequence according to SEQ
ID NO:4, SEQ ID NO:10, SEQ ID NO:12 or SEQ ID NO:14.
8. Modified neomycin phosphotransferase gene according to one of claims 6 or 7 containing or consisting of a sequence according to SEQ ID NO:3, SEQ ID NO:9, SEQ ID NO:11 or SEQ ID NO:13.
9. Modified neomycin phosphotransferase encoded by a modified neomycin phosphotransferase gene according to one of claims 1 to 8.
10. Eukaryotic expression vector containing a modified neomycin phosphotransferase gene according to one of claims 1 to 8.
11. Eukaryotic expression vector containing a heterologous gene of interest functionally linked to a heterologous promoter and a modified neomycin phosphotransferase gene which codes for a neomycin phosphotransferase having a lower enzyme activity compared with wild-type neomycin phosphotransferase.
12. Expression vector according to claim 11, characterised in that a) the modified neomycin phosphotransferase gene is a gene according to one of claims 1 to 5, or b) the modified neomycin phosphotransferase gene at amino acid position 182 and/or 227 codes for a different amino acid than the wild-type gene at the corresponding site, or c) the modified neomycin phosphotransferase gene at amino acid position 261 codes for a glycine.
13. Expression vector according to claim 12, characterised in that by comparison with the wild-type gene the modified neomycin phosphotransferase gene at amino acid position 182 codes for glycine or aspartic acid and/or by comparison with the wild-type gene at amino acid position 227 it codes for an alanine, glycine or valine.
14. Expression vector according to claim 12, characterised in that the modified neomycin phosphotransferase gene codes for a protein with an amino acid sequence according to SEQ ID NO:4, SEQ ID NO:6, SEQ ID
NO:8, SEQ ID NO:10, SEQ ID NO:12, SEQ ID NO:14, SEQ ID NO:18, SEQ ID:20 or SEQ ID NO:22.
15. Expression vector according to one of claims 12 to 14, characterised in that it contains one or more enhancers functionally linked to the promoter or promoters.
16. Expression vector according to claim 15 characterised in that the enhancer is a CMV or SV40 enhancer.
17. Expression vector according to one of claims 11 to 16 characterised in that it contains a hamster ubiquitin/S27a promotor.
18. Expression vector according to claim 17 characterised in that the heterologous gene of interest is under the control of the ubiquitin/S27a promoter.
19. Expression vector according to one of claims 11 to 18 characterised in that it additionally contains a gene for a fluorescent protein which is/will optionally be functionally linked to the gene of interest and the heterologous promoter.
20. Expression vector according to claim 19, characterised in that it additionally contains an internal ribosome entry site (IRES) which enables bicistronic expression of the gene which codes for a fluorescent protein, and of the gene which codes for a protein/product of interest, under the control of a heterologous promoter.
21. Expression vector according to claim 19 or 20, characterised in that the gene which codes for a fluorescent protein, and the modified neomycin-phosphotransferase gene are located in one or in two separate transcription units.
22. Mammalian cell containing a modified neomycin phosphotransferase gene according to one of claims 1 to 8.
23. Mammalian cell which has been transfected with an expression vector according to one of Claims 10 to 18.
24. Mammalian cell which has been transfected with an expression vector according to one of Claims 19 to 21.
25. Mammalian cell according to one of claims 22 to 24, characterised in that it has additionally been transfected with a gene for an amplifiable selectable marker.
26. Mammalian cell according to claim 25, characterised in that the amplifiable selectable marker gene is dihydrofolate-reductase (DHFR).
27. Mammalian cell according to one of claims 22 to 26, characterised in that the mammalian cell is a rodent cell.
28. Mammalian cell according to claim 27, characterised in that the rodent cell is a CHO or BHK cell.
29. Method of enriching mammalian cells, characterised in that (i) a pool of mammalian cells is transfected with a gene for a modified neomycin-phosphotransferase according to one of claims 1 to 8 or with an E182D, D227G or D261N neomycin phosphotransferase mutant;
(ii) the mammalian cells are cultivated under conditions which allow expression of the modified neomycin-phosphotransferase gene; and (iii) the mammalian cells are cultivated in the presence of at least one selecting agent which acts selectively on the growth of mammalian cells, and gives preference to the growth of those cells which express the modified neomycin-phosphotransferase gene.
30. Method of obtaining and selecting mammalian cells which express at least one heterologous gene of interest, characterised in that (i) a pool of mammalian cells is transfected with at least one gene of interest and a gene for a modified neomycin-phosphotransferase according to one of claims 1 to 8 or with an E182D, D227G or D261N
neomycin phosphotransferase mutant;
(ii) the mammalian cells are cultivated under conditions which allow expression of the gene or genes of interest and of the modified neomycin-phosphotransferase gene; and (iii) the mammalian cells are cultivated in the presence of at least one selecting agent which acts selectively on the growth of mammalian cells, and gives preference to the growth of those cells which express the modified neomycin-phosphotransferase gene.
31. Method according to claim 30, characterised in that the mammalian cells are additionally transfected with a gene for an amplifiable selectable marker and the selected mammalian cells are preferably subjected to at least one gene amplification step, the amplifiable selectable marker gene preferably being DHFR and the gene amplification preferably being carried out by the addition of methotrexate.
32. Method of obtaining and selecting mammalian cells which express at least one heterologous gene of interest, characterised in that (i) recombinant mammalian cells are transformed with an expression vector according to one of Claims 19 to 21;
(ii) are cultivated under conditions which allow expression of the gene (or genes) of interest, of the gene which codes for a fluorescent protein, and of the modified neomycin-phosphotransferase gene;
(iii) the mammalian cells are cultivated in the presence of at least one selecting agent which acts selectively on the growth of mammalian cells, and gives preference to the growth of those cells which express the modified neomycin-phosphotransferase gene; and (iv) the mammalian cells are sorted by flow-cytometric analysis.
33. Method according to claim 32, characterised in that the mammalian cells are additionally transfected with a gene for an amplifiable selectable marker and the cells sorted by flow-cytometric analysis are subjected to at least one gene amplification step, the amplifiable selectable marker gene preferably being DHFR and the gene amplification preferably being carried out by the addition of methotrexate.
34. Method of producing at least one protein of interest in recombinant mammalian cells, characterised in that (i) a pool of mammalian cells is transfected with at least one gene of interest and one gene for a modified neomycin-phosphotransferase according to one of claims 1 to 8 or with an E182D, D227G or D261N
neomycin phosphotransferase mutant;
(ii) the cells are cultivated under conditions which allow expression of the gene (or genes) of interest and of the modified neomycin-phosphotransferase;

(iii) the mammalian cells are cultivated in the presence of at least one selecting agent which acts selectively on the growth of mammalian cells, and gives preference to the growth of those cells which express the modified neomycin-phosphotransferase gene; and (iv) the protein(s) of interest is or are obtained from the mammalian cells or the culture supernatant.
35. Method of producing at least one protein of interest in recombinant mammalian cells, characterised in that (i) recombinant mammalian cells are transformed with an expression vector according to one of Claims 19 to 21;
(ii)are cultivated under conditions which allow expression of the gene (or genes) of interest, of the gene which codes for a fluorescent protein, and of the modified neomycin-phosphotransferase gene;
(iii) the mammalian cells are cultivated in the presence of at least one selecting agent which acts selectively on the growth of mammalian cells, and gives preference to the growth of those cells which express the modified neomycin-phosphotransferase gene; and (iv) the mammalian cells are sorted by flow-cytometric analysis (v) the proteins) of interest is (are) obtained from the mammalian cells or the culture supernatant.
36. Method of producing at least one protein of interest, characterised in that (i) mammalian cells according to one of Claims 25 or 26 are cultivated under conditions which allow expression of the gene of interest, of the modified neomycin-phosphotransferase gene and of the amplifiable selectable marker gene;
(ii) the mammalian cells are cultivated and selected in the presence of at least one selecting agent which acts selectively on the growth of mammalian cells, and gives preference to the growth of those cells which express the modified neomycin-phosphotransferase gene;

(iii) the selected mammalian cells are subjected to at least one gene amplification step; and (iv) the protein(s) of interest is or are subsequently obtained from the mammalian cells or the culture supernatant.
37. Method according to one of Claims 34 to 36, characterised in that the mammalian cells are transfected with at least two genes of interest which code for a heteromeric protein/product, and (i) are cultivated under conditions which allow expression of the subunits of the heteromeric protein/product; and (ii) the heteromeric protein/product is isolated from the culture or culture medium.
38. Method according to one of Claims 34 to 37, characterised in that the sorted mammalian cells exhibit an average specific productivity of more than 5pg of the desired gene product (or products) per day and per cell.
39. Method according to claim 36 or 37, characterised in that the sorted host cells exhibit an average specific productivity of more than 20pg of the desired gene product (or products) per day and per cell.
40. Method according to one of Claims 29 to 39, characterised in that the mammalian cell is a rodent cell.
41. Method according to Claim 40, characterised in that the rodent cell is a CHO or BHK cell.
42. Method according to one of Claims 29 to 41, characterised in that the mammalian cells are cultivated in suspension culture.
43. Method according to one of Claims 29 to 42, characterised in that the mammalian cells are cultivated serum-free.
CA2507664A 2002-11-29 2003-11-25 Novel neomycin-phosphotransferase-genes and methods for the selection of recombinant cells producing high levels of a desired gene product Expired - Lifetime CA2507664C (en)

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DE10256081.1 2002-11-29
DE10256081 2002-11-29
DE10330686.2 2003-07-08
DE10330686A DE10330686A1 (en) 2002-11-29 2003-07-08 New neomycin phosphotransferase genes and methods for the selection of high-producing recombinant cells
PCT/EP2003/013203 WO2004050884A2 (en) 2002-11-29 2003-11-25 Novel neomycin phosphotransferase genes and method for the selection of high-producing recombinant cells

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DE (1) DE50308030D1 (en)
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US9708626B2 (en) 2006-07-26 2017-07-18 Boehringer Ingelheim International Gmbh Regulatory nucleic acid elements
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AU2003302689A1 (en) 2004-06-23
ES2293096T3 (en) 2008-03-16
JP4344325B2 (en) 2009-10-14
CA2507664C (en) 2010-09-07
WO2004050884A3 (en) 2004-07-15
MXPA05005481A (en) 2005-07-25
DK1567652T3 (en) 2007-11-26
ATE371035T1 (en) 2007-09-15
WO2004050884A2 (en) 2004-06-17
AU2003302689B2 (en) 2009-02-05
EP1567652A2 (en) 2005-08-31
BR0316525A (en) 2005-10-04
KR20050085202A (en) 2005-08-29
KR101149777B1 (en) 2012-06-11
EP1567652B1 (en) 2007-08-22
JP2006507842A (en) 2006-03-09
DE50308030D1 (en) 2007-10-04

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