CA2383737A1 - Muc-1 derived peptides - Google Patents

Muc-1 derived peptides Download PDF

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Publication number
CA2383737A1
CA2383737A1 CA002383737A CA2383737A CA2383737A1 CA 2383737 A1 CA2383737 A1 CA 2383737A1 CA 002383737 A CA002383737 A CA 002383737A CA 2383737 A CA2383737 A CA 2383737A CA 2383737 A1 CA2383737 A1 CA 2383737A1
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Prior art keywords
polypeptide
cell
seq
analogue
polynucleotide
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CA002383737A
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French (fr)
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CA2383737C (en
Inventor
Joyce Taylor-Papadimitriou
Lukas Carl Heukamp
Rienk Offringa
Cornelis Johanna Maria Melief
Bruce Acres
Mireille Thomas
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Transgene SA
Cancer Research Horizons Ltd
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Individual
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Priority claimed from GBGB9921242.5A external-priority patent/GB9921242D0/en
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Publication of CA2383737A1 publication Critical patent/CA2383737A1/en
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Publication of CA2383737C publication Critical patent/CA2383737C/en
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/02Immunomodulators
    • A61P37/06Immunosuppressants, e.g. drugs for graft rejection
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies

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  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Medicinal Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Veterinary Medicine (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • General Chemical & Material Sciences (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Immunology (AREA)
  • Animal Behavior & Ethology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Public Health (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Molecular Biology (AREA)
  • Zoology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Toxicology (AREA)
  • Transplantation (AREA)
  • Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Peptides Or Proteins (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Medicines Containing Material From Animals Or Micro-Organisms (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)

Abstract

Described are peptides and polypeptides derived from the MUC-1 polypeptide which are able to activate Cytotoxic T Lymphocyte (CTL) response, analogues of such peptides and polypeptides nucleotide sequences encoding such peptides a nd polypeptides and therapeutic uses thereof. Moreover, indications for selecti ng appropriate minimal antigenic MUC-1 polypeptides with reference to the HLA- type of the patient to be treated or tested are described.

Claims (37)

1. A polypeptide consisting of or comprising at least one amino acid sequence of at most 20 consecutive amino-acids defined in SEQ ID NO: 1, said polypeptide binding at least one MHC-I glycoprotein, with the proviso that said polypeptide is different from SEQ
ID NO: 2.
2. The polypeptide of claim 1, wherein the amino acid sequence is selected from the group consisting of the amino acid sequences shown in SEQ ID NO: 3 to SEQ ID NO: 33, SEQ ID NO: 65 and SEQ ID NO: 66.
3. The polypeptide of claim 1 or 2, wherein the amino acid sequence is selected from the group consisting of:
(a) SEQ ID NO: 3 to SEQ ID NO: 6 and SEQ ID NO: 65 and SEQ ID NO: 66, and said polypeptide binds the HLA A2 glycoproteins of MHC-I;
(b) SEQ ID NO: 7 to SEQ ID NO: 15, and said polypeptide binds the HLA B7 glycoproteins of MHC-I;
(c) SEQ ID NO: 16 to SEQ ID NO: 19, and said polypeptide binds the HLA A3 glycoprotein of MHC-I;
(d) SEQ ID NO: 19 to SEQ ID NO: 21, and said polypeptide binds the HLA A11 glycoproteins of MHC-I;
(e) SEQ ID NO: 22 to SEQ ID NO: 25, and said polypeptide binds the HLA A24 glycoproteins of MHC-I;
(f) SEQ ID NO: 26 to SEQ ID NO: 29, and said polypeptide binds the HLA A1 glycoproteins of MHC-I; and (g) SEQ ID NO: 30 to SEQ ID NO: 33, and said polypeptide binds the HLA B8 glycoproteins of MHC-I.
4. An analogue of the polypeptide of any one of claims 1 to 3, which is capable of inhibiting the binding of the polypeptide or of an epitope contained in said polypeptide to a T cell receptor either by directly binding to the same T cell receptor or by binding to the same T cell receptor after being processed.
5. A polynucleotide encoding the polypeptide of any one of claims 1 to 3.
6. The polynucleotide of claim 5, comprising a nucleotide sequence selected from the group consisting of SEQ ID NO: 34 to SEQ ID NO: 64, and their complementary sequences.
7. A polynucleotide encoding the analogue of claim 4.
8. The polynucleotide of any one of claims 5 to 7, further containing elements allowing the expression of the polypeptide or analogue in a host cell.
9. The polynucleotide of claim 8, wherein said element for expression in a host cell is a promoter.
10. The polynucleotide of any one of claims 5 to 9, wherein said polynucleotide is associated with one or more compounds selected from the group consisting of transfecting agents, stabilizing agents and targeting agents.
11. A vector comprising at least one polynucleotide of any one of claims 5 to 10.
12. The vector of claim 11 comprising at least two different nucleotide sequences encoding at least two polypeptides as defined in claim 3.
13. The vector of claim 11 or 12 which is a plasmid.
14. The vector of claim 11 or 12, which is a viral vector.
15. A host cell comprising a polynucleotide of any one of claims 5 to 10 or a vector of any one of claims 11 to 14.
16. The host cell of claim 15, which is a prokaryotic cell, a yeast cell, or an animal cell, such as a mammalian cell.
17. A composition comprising a polypeptide of any one of claims 1 to 3, an analogue of claim 4, a polynucleotide of any one of claims 5 to 10, a vector of any one of claims 11 to 14, or a host cell of claim 15 or 16 or a combination of two or more of these different compounds.
18. The composition of claim 17, further comprising a pharmaceutical carrier.
19. Use of a polypeptide of any one of claims 1 to 3, of an analogue of claim 4, of a polynucleotide of any one of claims 5 to 10, of a vector of any one of claims 11 to 14, of a host cell of claim 15 or 16 or of a composition of claim 17 for the preparation of a medicament for effecting a CTL response in a subject.
20. A diagnostic composition comprising a polypeptide of any one of claims 1 to 3.
21. A vaccine comprising a polypeptide of any one of claims 1 to 3, an analogue of claim 4, a polynucleotide of any one of claims 5 to 10, a vector of any one of claims 11 to 14 or a host cell of claim 15 or 16, which vaccine is capable of stimulating a MHC class I restricted T cell response directed to an epitope as contained in a polypeptide of any one of claims 1 to 3.
22. The vaccine of claim 21 which comprises an adjuvant or a delivery system, which adjuvant or delivery system stimulates a MHC class I restricted response.
23. A T cell receptor which recognizes an epitope contained in a polypeptide of any one of claims 1 to 3 or a fragment of said T cell receptor which can recognize the epitope.
24. A T cell comprising the T cell receptor of claim 23.
25. The T cell of claim 24, which has been produced by replication in vitro.
26. A product that selectively binds a T cell receptor of claim 23.
27. The product of claim 26 which product comprises (a) an HLA molecule, or a fragment thereof, comprising a polypeptide of any one of claims 1 to 3 or an analogue of claim 4 in its peptide binding groove, or (b) an analogue of (a) which is capable of inhibiting the binding of (a) to a T cell receptor of claim 23.
28. A method of identifying a product of claim 26 or 27 comprising contacting a candidate substance with a T cell receptor or fragment of claim 23 and determining whether the candidate substance binds to the T cell receptor or fragment, the binding of the candidate substance to the T cell receptor or fragment indicating that the candidate substance is such a product.
29. A cell comprising a product of claim 26 or 27.
30. A method of identifying a MHC class I restricted T cell response, said method comprising contacting a population of cells comprising MHC class I restricted T cells with:
the polypeptide of any one of claims 1 to 3 or with the analogue of claim 4 under conditions suitable for the presentation of the polypeptide or analogue to the T cells, or a product of claim 26 or 27 or cells of claim 29; and determining whether the CD8 T cells recognize the polypeptide, analogue, the product or the cell, recognition by the T cells indicating the presence of a MHC class I
restricted T cell response.
31. The method of claim 30, in which the determination of the T cell recognition is done by detecting the expression of a substance by the T cells, the expression of the substance indicating that the T cells have recognized the polypeptide, the analogue, the product or the cell.
32. The method of claim 31, in which the substance which is detected is IFN-.gamma..
33. A method of diagnosing cancer in a host said method comprising determining the presence or absence in the host of a MHC class I restricted T cell response to a polypeptide of any one of claims 1 to 3, the presence of the MHC class I
restricted T
cell response indicating that the host has cancer.
34. The method of claim 33, in which the presence or absence of the MHC class I restricted T cell response is determined by the method of any one of claims 30 to 32.
35. A method of causing the replication of MHC class I restricted T cells which recognize an epitope of a cancer cell or an activated T cell, said method comprising contacting a population of cells which comprises MHC class I restricted T cells with the polypeptide of any one of claims 1 to 3 or with the analogue of claim 4 under conditions in which the polypeptide or the analogue are presented to T cells in the population, or with a product of claim 26 or 27 or with a cell of claim 29.
36. A pharmaceutical composition comprising a product of claim 26 or 27, a cell of claim 28, the T cell of claim 24 or 25, or a cell which has been replicated in the method of claim 35.
37. A kit for carrying out a method of any one of claims 30 to 35 comprising a polypeptide of any one of claims 1 to 3, an analogue of claim 4, a polynucleotide of any one of claims 5 to 10, a composition of claim 17 and/or a product of claim 26 or 27.
CA2383737A 1999-09-08 2000-09-07 Muc-1 derived peptides Expired - Fee Related CA2383737C (en)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
GB9921242.5 1999-09-08
GBGB9921242.5A GB9921242D0 (en) 1999-09-08 1999-09-08 Cancer vaccine and diagnosis
EP99402237.4 1999-09-10
EP99402237 1999-09-10
US18721500P 2000-03-03 2000-03-03
US60/187,215 2000-03-03
PCT/EP2000/008761 WO2001018035A2 (en) 1999-09-08 2000-09-07 Muc-1 derived peptides

Publications (2)

Publication Number Publication Date
CA2383737A1 true CA2383737A1 (en) 2001-03-15
CA2383737C CA2383737C (en) 2011-01-18

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CA2383737A Expired - Fee Related CA2383737C (en) 1999-09-08 2000-09-07 Muc-1 derived peptides

Country Status (11)

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US (3) US20050142640A1 (en)
EP (1) EP1210430B1 (en)
JP (1) JP2003510094A (en)
AT (1) ATE338121T1 (en)
AU (1) AU778701B2 (en)
CA (1) CA2383737C (en)
DE (1) DE60030450T2 (en)
DK (1) DK1210430T3 (en)
ES (1) ES2270870T3 (en)
PT (1) PT1210430E (en)
WO (1) WO2001018035A2 (en)

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JP2003533181A (en) * 2000-02-01 2003-11-11 ジ・オースティン・リサーチ・インスティテュート Mucin-1 derived antigen and its use in immunotherapy
EP1531842A4 (en) 2000-12-22 2007-03-07 Dana Farber Cancer Inst Inc Regulation of cell growth by muc1
WO2002076485A2 (en) 2001-03-27 2002-10-03 Biomira, Inc. Vaccine for modulating between t1 and t2 immune responses
EP2314712B1 (en) 2001-11-07 2014-01-08 Mannkind Corporation Expression vectors encoding epitopes of antigens and methods for their design
EP1497649A4 (en) * 2002-04-22 2006-03-22 Dyax Corp Antibodies specific for mucin polypeptide
GB0212036D0 (en) * 2002-05-24 2002-07-03 Glaxo Group Ltd Vaccines
GB0212046D0 (en) * 2002-05-24 2002-07-03 Glaxo Group Ltd Vaccines
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US7696306B2 (en) * 2003-07-11 2010-04-13 Board of Agents of the University of Nebraska Compositions and methods for preventing or treating cancer
GB0321614D0 (en) * 2003-09-15 2003-10-15 Glaxo Group Ltd Vaccines
WO2005042573A1 (en) 2003-10-24 2005-05-12 Dana-Farber Cancer Institute, Inc. Modulation of the interaction of muc1 with muc1 ligands
AU2004299457B2 (en) * 2003-12-12 2011-03-24 Government Of The United States Of America, As Represented By The Secretary Department Of Health And Human Services A human cytotoxic T-lymphocyte epitope and its agonist epitope from the non-variable number of tandem repeat sequence of MUC-1
TW201204410A (en) 2004-04-01 2012-02-01 Oncothyreon Inc Mucinous glycoprotein (MUC-1) vaccine
PT1896051E (en) 2005-06-28 2015-01-13 Oncothyreon Inc Method of treating patients with a mucinous glycoprotein (muc-1) vaccine
WO2008011672A1 (en) * 2006-07-25 2008-01-31 4G Vaccines Pty Ltd A cancer vaccine comprising a mucin 1 (muc1) t cell epitope-derived peptide
US9487574B2 (en) 2006-09-21 2016-11-08 Vaxil Biotherapeutics Ltd. Antigen specific multi epitope vaccines
US7972870B2 (en) 2007-02-02 2011-07-05 Dana-Farber Cancer Institute, Inc. Methods and compositions relating to the regulation of MUC1 by HSF1 and STAT3
WO2008097844A2 (en) 2007-02-02 2008-08-14 Dana -Farber Cancer Institute, Inc. Methods and compositions relating to the regulation of apoptosis by muc1 and bh3- containing proapoptotic proteins
WO2009108807A1 (en) * 2008-02-26 2009-09-03 The Regents Of The University Of California Glycopeptides and methods of making and using them
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US8614186B2 (en) 2009-05-27 2013-12-24 Dana-Farber Cancer Institute, Inc. Inhibition of inflammation using antagonists of MUC1
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US9597392B2 (en) 2010-05-10 2017-03-21 Ascend Biopharmaceuticals Pty Ltd. Use of high molecular weight mannan for inducing and/or enhancing an immune response
CA2825972A1 (en) 2011-02-24 2012-08-30 Oncothyreon Inc. Muc1 based glycolipopeptide vaccine with adjuvant
CN104024429B (en) 2011-08-17 2019-06-04 全球免疫股份有限公司 Yeast-MUC1 immunotherapeutic composition and application thereof
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Also Published As

Publication number Publication date
US20050142640A1 (en) 2005-06-30
DE60030450T2 (en) 2007-08-30
DK1210430T3 (en) 2006-11-20
WO2001018035A9 (en) 2002-09-06
AU7651500A (en) 2001-04-10
US7892828B2 (en) 2011-02-22
DE60030450D1 (en) 2006-10-12
ES2270870T3 (en) 2007-04-16
US20080227082A1 (en) 2008-09-18
AU778701B2 (en) 2004-12-16
JP2003510094A (en) 2003-03-18
ATE338121T1 (en) 2006-09-15
EP1210430A2 (en) 2002-06-05
PT1210430E (en) 2006-12-29
EP1210430B1 (en) 2006-08-30
US20100255501A1 (en) 2010-10-07
WO2001018035A2 (en) 2001-03-15
CA2383737C (en) 2011-01-18
WO2001018035A3 (en) 2001-11-08

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