AU742476B2 - Novel bicyclonucleoside and oligonucleotide analogue - Google Patents
Novel bicyclonucleoside and oligonucleotide analogue Download PDFInfo
- Publication number
- AU742476B2 AU742476B2 AU53349/00A AU5334900A AU742476B2 AU 742476 B2 AU742476 B2 AU 742476B2 AU 53349/00 A AU53349/00 A AU 53349/00A AU 5334900 A AU5334900 A AU 5334900A AU 742476 B2 AU742476 B2 AU 742476B2
- Authority
- AU
- Australia
- Prior art keywords
- compound
- group
- analogue
- condition
- oligonucleotide
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired
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- 108091034117 Oligonucleotide Proteins 0.000 title claims description 43
- 238000000034 method Methods 0.000 claims description 24
- -1 purine nucleic acid Chemical group 0.000 claims description 20
- 108020004707 nucleic acids Proteins 0.000 claims description 17
- 102000039446 nucleic acids Human genes 0.000 claims description 17
- 239000002777 nucleoside Substances 0.000 claims description 12
- 150000003833 nucleoside derivatives Chemical class 0.000 claims description 12
- 125000000217 alkyl group Chemical group 0.000 claims description 11
- 125000003118 aryl group Chemical group 0.000 claims description 10
- 125000004435 hydrogen atom Chemical group [H]* 0.000 claims description 10
- KDCGOANMDULRCW-UHFFFAOYSA-N Purine Natural products N1=CNC2=NC=NC2=C1 KDCGOANMDULRCW-UHFFFAOYSA-N 0.000 claims description 9
- 108091033319 polynucleotide Proteins 0.000 claims description 9
- 102000040430 polynucleotide Human genes 0.000 claims description 9
- 239000002157 polynucleotide Substances 0.000 claims description 9
- 125000000753 cycloalkyl group Chemical group 0.000 claims description 8
- 125000003710 aryl alkyl group Chemical group 0.000 claims description 7
- 125000002252 acyl group Chemical group 0.000 claims description 6
- 125000003342 alkenyl group Chemical group 0.000 claims description 6
- 125000006193 alkinyl group Chemical group 0.000 claims description 6
- 125000003545 alkoxy group Chemical group 0.000 claims description 6
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims description 6
- 125000005843 halogen group Chemical group 0.000 claims description 5
- 125000003808 silyl group Chemical group [H][Si]([H])([H])[*] 0.000 claims description 5
- CZPWVGJYEJSRLH-UHFFFAOYSA-N Pyrimidine Chemical compound C1=CN=CN=C1 CZPWVGJYEJSRLH-UHFFFAOYSA-N 0.000 claims description 4
- 125000000714 pyrimidinyl group Chemical group 0.000 claims description 4
- NBIIXXVUZAFLBC-UHFFFAOYSA-N Phosphoric acid Chemical group OP(O)(O)=O NBIIXXVUZAFLBC-UHFFFAOYSA-N 0.000 claims description 3
- 230000000118 anti-neoplastic effect Effects 0.000 claims description 3
- 239000002246 antineoplastic agent Substances 0.000 claims description 3
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- 208000015181 infectious disease Diseases 0.000 claims description 2
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- 206010028980 Neoplasm Diseases 0.000 claims 2
- 201000011510 cancer Diseases 0.000 claims 2
- 206010022000 influenza Diseases 0.000 claims 2
- 208000036142 Viral infection Diseases 0.000 claims 1
- 239000000243 solution Substances 0.000 description 70
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 64
- 150000001875 compounds Chemical class 0.000 description 51
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 44
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- 230000015572 biosynthetic process Effects 0.000 description 42
- 238000003786 synthesis reaction Methods 0.000 description 40
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- VLKZOEOYAKHREP-UHFFFAOYSA-N n-Hexane Chemical compound CCCCCC VLKZOEOYAKHREP-UHFFFAOYSA-N 0.000 description 30
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- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 24
- 229910052757 nitrogen Inorganic materials 0.000 description 23
- 238000001644 13C nuclear magnetic resonance spectroscopy Methods 0.000 description 22
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 22
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical class [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 22
- 239000012074 organic phase Substances 0.000 description 22
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 21
- UIIMBOGNXHQVGW-UHFFFAOYSA-M Sodium bicarbonate Chemical class [Na+].OC([O-])=O UIIMBOGNXHQVGW-UHFFFAOYSA-M 0.000 description 19
- 230000000692 anti-sense effect Effects 0.000 description 18
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- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 15
- 229940127073 nucleoside analogue Drugs 0.000 description 14
- 239000002773 nucleotide Substances 0.000 description 14
- OAYLNYINCPYISS-UHFFFAOYSA-N ethyl acetate;hexane Chemical compound CCCCCC.CCOC(C)=O OAYLNYINCPYISS-UHFFFAOYSA-N 0.000 description 13
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- 101150041968 CDC13 gene Proteins 0.000 description 9
- HEDRZPFGACZZDS-MICDWDOJSA-N Trichloro(2H)methane Chemical compound [2H]C(Cl)(Cl)Cl HEDRZPFGACZZDS-MICDWDOJSA-N 0.000 description 9
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 description 9
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- 125000002103 4,4'-dimethoxytriphenylmethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)(C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H])C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H] 0.000 description 8
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- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 8
- JUJWROOIHBZHMG-UHFFFAOYSA-N Pyridine Chemical compound C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 description 8
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- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 description 8
- 150000007523 nucleic acids Chemical class 0.000 description 8
- WRIKHQLVHPKCJU-UHFFFAOYSA-N sodium bis(trimethylsilyl)amide Chemical compound C[Si](C)(C)N([Na])[Si](C)(C)C WRIKHQLVHPKCJU-UHFFFAOYSA-N 0.000 description 8
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 8
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 7
- 108020004414 DNA Proteins 0.000 description 7
- 238000010521 absorption reaction Methods 0.000 description 7
- QTBSBXVTEAMEQO-UHFFFAOYSA-N acetic acid Substances CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 7
- FPGGTKZVZWFYPV-UHFFFAOYSA-M tetrabutylammonium fluoride Chemical compound [F-].CCCC[N+](CCCC)(CCCC)CCCC FPGGTKZVZWFYPV-UHFFFAOYSA-M 0.000 description 7
- KNLNWXXWKDEEFW-JIOCBJNQSA-N 1-[(1r,4s,6r,7s)-7-hydroxy-4-(hydroxymethyl)-2,5-dioxabicyclo[2.2.1]heptan-6-yl]pyrimidine-2,4-dione Chemical compound N1([C@@H]2O[C@]3(CO[C@@]2([C@@H]3O)[H])CO)C=CC(=O)NC1=O KNLNWXXWKDEEFW-JIOCBJNQSA-N 0.000 description 6
- TVWNVPHSBBUGQZ-JQCXWYLXSA-N 1-[(2R,3R,4S,5S)-3,4-dihydroxy-5-(1-hydroxyethenyl)oxolan-2-yl]pyrimidine-2,4-dione Chemical compound O1[C@H](C(O)=C)[C@@H](O)[C@@H](O)[C@@H]1N1C(=O)NC(=O)C=C1 TVWNVPHSBBUGQZ-JQCXWYLXSA-N 0.000 description 6
- WFDIJRYMOXRFFG-UHFFFAOYSA-N Acetic anhydride Chemical compound CC(=O)OC(C)=O WFDIJRYMOXRFFG-UHFFFAOYSA-N 0.000 description 6
- ISAKRJDGNUQOIC-UHFFFAOYSA-N Uracil Chemical compound O=C1C=CNC(=O)N1 ISAKRJDGNUQOIC-UHFFFAOYSA-N 0.000 description 6
- 125000004432 carbon atom Chemical group C* 0.000 description 6
- 229940125782 compound 2 Drugs 0.000 description 6
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- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical compound NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 description 6
- 238000005259 measurement Methods 0.000 description 6
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- AOSZTAHDEDLTLQ-AZKQZHLXSA-N (1S,2S,4R,8S,9S,11S,12R,13S,19S)-6-[(3-chlorophenyl)methyl]-12,19-difluoro-11-hydroxy-8-(2-hydroxyacetyl)-9,13-dimethyl-6-azapentacyclo[10.8.0.02,9.04,8.013,18]icosa-14,17-dien-16-one Chemical compound C([C@@H]1C[C@H]2[C@H]3[C@]([C@]4(C=CC(=O)C=C4[C@@H](F)C3)C)(F)[C@@H](O)C[C@@]2([C@@]1(C1)C(=O)CO)C)N1CC1=CC=CC(Cl)=C1 AOSZTAHDEDLTLQ-AZKQZHLXSA-N 0.000 description 5
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- 125000005428 anthryl group Chemical group [H]C1=C([H])C([H])=C2C([H])=C3C(*)=C([H])C([H])=C([H])C3=C([H])C2=C1[H] 0.000 description 1
- 229940034982 antineoplastic agent Drugs 0.000 description 1
- 229940121357 antivirals Drugs 0.000 description 1
- 125000006615 aromatic heterocyclic group Chemical group 0.000 description 1
- 125000001769 aryl amino group Chemical group 0.000 description 1
- 125000004104 aryloxy group Chemical group 0.000 description 1
- 125000003236 benzoyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)=O 0.000 description 1
- 238000006480 benzoylation reaction Methods 0.000 description 1
- 125000001584 benzyloxycarbonyl group Chemical group C(=O)(OCC1=CC=CC=C1)* 0.000 description 1
- 239000004305 biphenyl Substances 0.000 description 1
- 235000010290 biphenyl Nutrition 0.000 description 1
- 238000009835 boiling Methods 0.000 description 1
- GDTBXPJZTBHREO-UHFFFAOYSA-N bromine Substances BrBr GDTBXPJZTBHREO-UHFFFAOYSA-N 0.000 description 1
- 229910052794 bromium Inorganic materials 0.000 description 1
- 125000004369 butenyl group Chemical group C(=CCC)* 0.000 description 1
- 125000000480 butynyl group Chemical group [*]C#CC([H])([H])C([H])([H])[H] 0.000 description 1
- 239000003054 catalyst Substances 0.000 description 1
- 210000000170 cell membrane Anatomy 0.000 description 1
- 239000003153 chemical reaction reagent Substances 0.000 description 1
- 239000007810 chemical reaction solvent Substances 0.000 description 1
- 229910052801 chlorine Inorganic materials 0.000 description 1
- 229940125773 compound 10 Drugs 0.000 description 1
- 229940125797 compound 12 Drugs 0.000 description 1
- 238000009833 condensation Methods 0.000 description 1
- 230000005494 condensation Effects 0.000 description 1
- 238000006482 condensation reaction Methods 0.000 description 1
- 230000008878 coupling Effects 0.000 description 1
- 238000010168 coupling process Methods 0.000 description 1
- 238000005859 coupling reaction Methods 0.000 description 1
- 239000006071 cream Substances 0.000 description 1
- 125000001995 cyclobutyl group Chemical group [H]C1([H])C([H])([H])C([H])(*)C1([H])[H] 0.000 description 1
- 125000000582 cycloheptyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])C1([H])[H] 0.000 description 1
- 125000000113 cyclohexyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])C1([H])[H] 0.000 description 1
- 125000000640 cyclooctyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])C([H])([H])C1([H])[H] 0.000 description 1
- 125000001511 cyclopentyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C1([H])[H] 0.000 description 1
- 125000001559 cyclopropyl group Chemical group [H]C1([H])C([H])([H])C1([H])* 0.000 description 1
- 230000006196 deacetylation Effects 0.000 description 1
- 238000003381 deacetylation reaction Methods 0.000 description 1
- 238000006264 debenzylation reaction Methods 0.000 description 1
- 238000000354 decomposition reaction Methods 0.000 description 1
- 125000002704 decyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 238000005828 desilylation reaction Methods 0.000 description 1
- 238000006642 detritylation reaction Methods 0.000 description 1
- 125000005982 diphenylmethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])(*)C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- 201000010099 disease Diseases 0.000 description 1
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 1
- 229940079593 drug Drugs 0.000 description 1
- 239000003937 drug carrier Substances 0.000 description 1
- 238000006911 enzymatic reaction Methods 0.000 description 1
- 125000002534 ethynyl group Chemical group [H]C#C* 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 125000004030 farnesyl group Chemical group [H]C([*])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 239000011737 fluorine Substances 0.000 description 1
- 229910052731 fluorine Inorganic materials 0.000 description 1
- 125000002485 formyl group Chemical group [H]C(*)=O 0.000 description 1
- 125000002350 geranyl group Chemical group [H]C([*])([H])/C([H])=C(C([H])([H])[H])/C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 229910052736 halogen Inorganic materials 0.000 description 1
- 150000002367 halogens Chemical class 0.000 description 1
- 125000003187 heptyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 125000000623 heterocyclic group Chemical group 0.000 description 1
- 125000004051 hexyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 238000004128 high performance liquid chromatography Methods 0.000 description 1
- 230000007062 hydrolysis Effects 0.000 description 1
- 238000006460 hydrolysis reaction Methods 0.000 description 1
- 230000000977 initiatory effect Effects 0.000 description 1
- 239000011630 iodine Substances 0.000 description 1
- 229910052740 iodine Inorganic materials 0.000 description 1
- 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 1
- ZLVXBBHTMQJRSX-VMGNSXQWSA-N jdtic Chemical compound C1([C@]2(C)CCN(C[C@@H]2C)C[C@H](C(C)C)NC(=O)[C@@H]2NCC3=CC(O)=CC=C3C2)=CC=CC(O)=C1 ZLVXBBHTMQJRSX-VMGNSXQWSA-N 0.000 description 1
- 239000002502 liposome Substances 0.000 description 1
- 239000007788 liquid Substances 0.000 description 1
- 229910052943 magnesium sulfate Inorganic materials 0.000 description 1
- 235000019341 magnesium sulphate Nutrition 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- UKVIEHSSVKSQBA-UHFFFAOYSA-N methane;palladium Chemical compound C.[Pd] UKVIEHSSVKSQBA-UHFFFAOYSA-N 0.000 description 1
- 125000001570 methylene group Chemical group [H]C([H])([*:1])[*:2] 0.000 description 1
- YACKEPLHDIMKIO-UHFFFAOYSA-N methylphosphonic acid Chemical compound CP(O)(O)=O YACKEPLHDIMKIO-UHFFFAOYSA-N 0.000 description 1
- 239000002480 mineral oil Substances 0.000 description 1
- 235000010446 mineral oil Nutrition 0.000 description 1
- 239000011259 mixed solution Substances 0.000 description 1
- 125000000896 monocarboxylic acid group Chemical group 0.000 description 1
- 239000012452 mother liquor Substances 0.000 description 1
- KQZLWYOPMVFLBN-HRSBRNJNSA-N n-[9-[(1r,4s,6r,7s)-4-(hydroxymethyl)-7-phenylmethoxy-2,5-dioxabicyclo[2.2.1]heptan-6-yl]-6-oxo-3h-purin-2-yl]-2-methylpropanamide Chemical compound O([C@@H]1[C@]2(CO)CO[C@]1([C@@H](O2)N1C2=C(C(NC(NC(=O)C(C)C)=N2)=O)N=C1)[H])CC1=CC=CC=C1 KQZLWYOPMVFLBN-HRSBRNJNSA-N 0.000 description 1
- 125000004108 n-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 description 1
- 125000001624 naphthyl group Chemical group 0.000 description 1
- 125000004923 naphthylmethyl group Chemical group C1(=CC=CC2=CC=CC=C12)C* 0.000 description 1
- 150000002829 nitrogen Chemical class 0.000 description 1
- 125000001400 nonyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 125000003835 nucleoside group Chemical group 0.000 description 1
- 125000002347 octyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 239000002674 ointment Substances 0.000 description 1
- 238000002515 oligonucleotide synthesis Methods 0.000 description 1
- 230000003647 oxidation Effects 0.000 description 1
- 238000007254 oxidation reaction Methods 0.000 description 1
- 230000001717 pathogenic effect Effects 0.000 description 1
- 125000002255 pentenyl group Chemical group C(=CCCC)* 0.000 description 1
- 125000001147 pentyl group Chemical group C(CCCC)* 0.000 description 1
- 125000005561 phenanthryl group Chemical group 0.000 description 1
- 125000000951 phenoxy group Chemical group [H]C1=C([H])C([H])=C(O*)C([H])=C1[H] 0.000 description 1
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 description 1
- UYWQUFXKFGHYNT-UHFFFAOYSA-N phenylmethyl ester of formic acid Natural products O=COCC1=CC=CC=C1 UYWQUFXKFGHYNT-UHFFFAOYSA-N 0.000 description 1
- FVZVCSNXTFCBQU-UHFFFAOYSA-N phosphanyl Chemical group [PH2] FVZVCSNXTFCBQU-UHFFFAOYSA-N 0.000 description 1
- 230000002265 prevention Effects 0.000 description 1
- 150000003138 primary alcohols Chemical class 0.000 description 1
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 1
- 230000035755 proliferation Effects 0.000 description 1
- 125000001501 propionyl group Chemical group O=C([*])C([H])([H])C([H])([H])[H] 0.000 description 1
- 125000002568 propynyl group Chemical group [*]C#CC([H])([H])[H] 0.000 description 1
- 125000006239 protecting group Chemical group 0.000 description 1
- 230000001681 protective effect Effects 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 239000010453 quartz Substances 0.000 description 1
- 238000007363 ring formation reaction Methods 0.000 description 1
- 108010062513 snake venom phosphodiesterase I Proteins 0.000 description 1
- 239000012064 sodium phosphate buffer Substances 0.000 description 1
- 239000007787 solid Substances 0.000 description 1
- 239000003381 stabilizer Substances 0.000 description 1
- QAOWNCQODCNURD-UHFFFAOYSA-N sulfuric acid Substances OS(O)(=O)=O QAOWNCQODCNURD-UHFFFAOYSA-N 0.000 description 1
- GFYHSKONPJXCDE-UHFFFAOYSA-N sym-collidine Natural products CC1=CN=C(C)C(C)=C1 GFYHSKONPJXCDE-UHFFFAOYSA-N 0.000 description 1
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 125000001412 tetrahydropyranyl group Chemical group 0.000 description 1
- RYYWUUFWQRZTIU-UHFFFAOYSA-K thiophosphate Chemical compound [O-]P([O-])([O-])=S RYYWUUFWQRZTIU-UHFFFAOYSA-K 0.000 description 1
- 229940104230 thymidine Drugs 0.000 description 1
- 229940113082 thymine Drugs 0.000 description 1
- JOXIMZWYDAKGHI-UHFFFAOYSA-N toluene-4-sulfonic acid Chemical compound CC1=CC=C(S(O)(=O)=O)C=C1 JOXIMZWYDAKGHI-UHFFFAOYSA-N 0.000 description 1
- 125000003944 tolyl group Chemical group 0.000 description 1
- 230000000699 topical effect Effects 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- 125000004665 trialkylsilyl group Chemical group 0.000 description 1
- YNJBWRMUSHSURL-UHFFFAOYSA-N trichloroacetic acid Chemical compound OC(=O)C(Cl)(Cl)Cl YNJBWRMUSHSURL-UHFFFAOYSA-N 0.000 description 1
- 125000002023 trifluoromethyl group Chemical group FC(F)(F)* 0.000 description 1
- 125000000025 triisopropylsilyl group Chemical group C(C)(C)[Si](C(C)C)(C(C)C)* 0.000 description 1
- 238000006227 trimethylsilylation reaction Methods 0.000 description 1
- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- 241000712461 unidentified influenza virus Species 0.000 description 1
- 125000000391 vinyl group Chemical group [H]C([*])=C([H])[H] 0.000 description 1
- 229920002554 vinyl polymer Polymers 0.000 description 1
- 125000005023 xylyl group Chemical group 0.000 description 1
- 239000011592 zinc chloride Substances 0.000 description 1
- 235000005074 zinc chloride Nutrition 0.000 description 1
Landscapes
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
- Saccharide Compounds (AREA)
Description
AUSTRALIA
Patents Act COMPLETE SPECIFICATION
(ORIGINAL)
Class Int. Class Application Number: Lodged: Complete Specification Lodged: Accepted: Published: Priority Related Art: Name of Applicant: Takeshi Imanishi Actual Inventor(s): TAKESHI IMANISHI Address for Service: PHILLIPS ORMONDE FITZPATRICK Patent and Trade Mark Attorneys 367 Collins Street Melbourne 3000 AUSTRALIA Invention Title: NOVEL BICYCLONUCLEOSIDE AND OLIGONUCLEOTIDE ANALOGUE Our Ref 623433 POF Code: 1594/370752 The following statement is a full description of this invention, including the best method of performing it known to applicant(s): -1- 6006q -la-
SPECIFICATION
NOVEL BICYCLONUCLEOSIDE AND OLIGONUCLEOTIDE ANALOGUE TECHNICAL FIELD This application is a divisional application of Australian Patent Application 61209/98 (720742) the entire content of which is hereby incorporated by reference.
This invention relates to a novel nucleoside analogue and a novel nucleotide analogue, and more particularly, to a nucleotide analogue suitable as an antisense molecule.
BACKGROUND ART In 1978, it was reported for the first time that an antisense molecule inhibited influenza virus infection. Since then, reports have been issued that antisense molecules inhibited the expression of oncogenes and AIDS infection. In recent years, antisense oligonucleotides have become one of the most promising pharmaceuticals, because they specifically control the expression of undesirable genes.
The antisense method is based on the idea of controlling a unidirectional flow called the central dogma, DNA->RNA--protein, by use of an antisense oligonucleotide.
When a naturally occurring oligonucleotide was applied to this method as an antisense molecule, however, it was decomposed with various nucleases in vivo, or its permeation through the cell membrane was not high. To solve these problems, numerous nucleic acid derivatives and analogues have been synthesized, and their studies have been conducted. Examples of the synthesized products include a phosphorothioate having a sulfur atom substituting for an oxygen atom on the phosphorus atom, and a methylphosphonate W:\lonM\Specics\Div of 720472.doc having a substituting methyl group. Recently, products have been synthesized in which the phosphorus atom has also been substituted by a carbon atom, or the structure of the sugar portion has been changed, or the nucleic acid base has been modified. Any resulting derivatives or analogues, however, have not been fully satisfactory in terms of in vivo stability, ease of synthesis, and sequence specificity (the property of selectively controlling the expression of a particular gene alone).
Under these circumstances, there has been a demand for the creation of an antisense molecule which is minimally decomposed with a nuclease in vivo, binds to target messenger RNA with high affinity, has high specificity, and can thus efficiently control the expression of a particular 15 gene.
DISCLOSURE OF THE INVENTION oo The inventors of the-present invention designed a *ooo nucleic acid analogue with immobilized conformation of the *"sugar portion in a nucleic acid, which would be useful in the antisense method. They synthesized a nucleoside analogue which will be a unit structure therefor, and 0:i confirmed that an oligonucleotide analogue prepared using it was very useful as an antisense molecule.
2 2a- In one aspect the present invention provides a method of treatment of a medical condition comprising administering a therapeutically effective amount of an oligonucleotide or polynucleotide analogue having one or more structures of the general formula (la) 0 0
B
(1a)
I
where B is a pyrimidine or purine nucleic acid base, or an analogue thereof.
In a further aspect the present invention provides a method of treatment of a medical condition comprising administration of a therapeutically effective amount of an oligonucleotide or polynucleotide analogue of the general formula
(II)
W O 1 0
B
O
"R
I
O- o-P od o 1 L 2 n n 3 n where B 1 and B are identical or different, and each represent a pyrimidine or purine nucleic acid base, or an analogue thereof, R is a hydrogen atom, a hydroxyl group, a halogen atom, or an alkoxy group, W 1 and W 2 are identical or different, and each represent a hydrogen atom, an alkyl group, an alkenyl group, an alkinyl group, a cycloalkyl group, an aralkyl group, an aryl group, an acyl group, a silyl group, a phosphoric acid residue, a naturally occurring nucleoside or a synthetic nucleoside bound via a phosphodiester bond, or an oligonucleotide or polynucleotide containing the nucleoside, n"s or n 2 's are identical or different, and each denote an integer of 0 to 50, provided that n's or n 2 's are not zero at the same time, and that not all of n 2 's are zero at the same time, n 3 denotes an integer of 1 W:\fioa\SpeciesDiv of 720472.doc 2b to 50, provided that n 1 and/or n 2 are or is 2 or more, B 1 and B need not be identical, and R's need not be identical.
BRIEF DESCRIPTION OF THE DRAWINGS Fig. 1 is a chart showing the time course of the ultraviolet absorption (260 nm) of a naturally occurring oligonucleotide decomposed with an exonuclease; and Fig. 2 is a chart showing the time course of the e :\fionaN\SpciesDiv of 720472.doc ultraviolet absorption (260 nm) of an oligonucleotide of the present invention (X2) decomposed with an exonuclease.
Details of the present invention will now be described.
The structure of a nucleoside analogue according to the present invention is a nucleoside analogue of the following general formula (I) 0 B 0 o 0 S(1) 15 where B is a pyrimidine or purine nucleic acid base, or an analogue thereof, and X and Y are identical or different, and each represent a hydrogen atom, an alkyl group, an alkenyl group, an alkinyl group, a cycloalkyl group, an aralkyl group, an aryl group, an acyl group, or a silyl group, or an amidite derivative thereof.
The alkyl group represents a straight chain or branched chain alkyl group with 1 to 20 carbon atoms. Its examples include methyl, ethyl, n-propyl, i-propyl, n-butyl, t-butyl, pentyl, hexyl, heptyl, octyl, nonyl and decyl.
The alkenyl group represents a straight chain or branched chain alkenyl group with 2 to 20 carbon atoms. Its examples include vinyl, allyl, butenyl, pentenyl, geranyl, 3 b -4and farnesyl.
The alkinyl group represents a straight chain or branched chain alkinyl group with 2 to 20 carbon atoms. Its examples include ethynyl, propynyl, and butynyl.
The cycloalkyl group represents a cycloalkyl group with 3 to 8 carbon atoms, and includes, for example, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl. Another example is a heterocyclic group in which one or more arbitrary methylene groups on the ring of the cycloalkyl group have been substituted by an oxygen atom, a sulfur atom, or an alkyl-substituted nitrogen atom. It is, for instance, a tetrahydropyranyl group.
The aryl group refers to a monovalent substituent formed by removing one hydrogen atom from an aromatic heterocyclic group or an aromatic hydrocarbon group. Preferably, it represents a monovalent substituent formed by removing one hydrogen atom from an aromatic hydrocarbon group, and includes, for example, phenyl, tolyl, xylyl, biphenyl, naphthyl, anthryl, and phenanthryl. The carbon atom on the ring of the aryl group may be substituted by one or more of a halogen atom, a lower alkyl group, a hydroxyl group, an alkoxy group, an amino group, a nitro group, a trifluoromethyl group and an aryloxy group.
The aralkyl group refers to an alkyl group bonded to an aryl group, and may be substituted. The aralkyl group \SPE I that may be substituted represents an alkyl group bonded to an aryl group, with one or more arbitrary hydrogen atoms of the aryl group and the alkyl group being optionally substituted by the following substituents: Examples of the substituents are acyl, amino, aryl, alkyl, cycloalkyl, alkoxy, hydroxyl, nitro, and halogen.
The amino group need not be substituted, but the amino group when substituted includes, for example, alkylamino, arylamino, and acylamino. Examples of the alkoxy group are methoxy, ethoxy, n-propoxy, i-propoxy, nbutoxy, i-butoxy, s-butoxy, t-butoxy, pentyloxy, hexyloxy, and phenoxy. Examples of the halogen atom are fluorine, chlorine, bromine, and iodine.
The preferred examples of the aralkyl group are i. 15 trityl, benzyl, phenethyl, tritylmethyl, diphenylmethyl, naphthylmethyl, and 4,4'-dimethoxytrityl (DMTr).
Particularly preferred is a DMTr group.
As the acyl group, acetyl, formyl, propionyl, benzoyl, and benzyloxycarbonyl can be exemplified. An example of the silyl group is a trialkylsilyl group, preferably trimethylsilyl, triethylsilyl, triisopropylsilyl, tbutyldimethylsilyl or t-butyldiphenylsilyl, and more preferably trimethylsilyl.
The nucleotide analogue of the present invention is an oligonucleotide or polynucleotide analogue having one or more structures of the general formula (Ia) 5 -0 B 0
O
where B is a pyrimidine or purine nucleic acid base, or an analogue thereof, or an oligonucleotide or polynucleotide analogue of the general formula (II) W' 0~ 1 0 <O0 l
O
R
15 O-P nl
*O
L 2 n3
II)
where B 1 and B are identical or different, and each represent a pyrimidine or purine nucleic acid base, or an analogue thereof, R is a hydrogen atom, a hydroxyl group, a halogen atom, or an alkoxy group, W1 and W 2 are identical or different, and each represent a hydrogen atom, an alkyl group, an alkenyl group, an alkinyl group, a cycloalkyl group, an aralkyl group, an aryl group, an acyl group, a silyl group, a phosphoric acid residue, a naturally occurring nucleoside or a synthetic nucleoside bound 6 via a phosphodiester bond, or an oligonucleotide or polynucleotide containing the nucleoside, n"'s or n 2 's are identical or different, and each denote an integer of 0 to 50, provided that n 1 's or n 2 's are not zero at the same time, and that not all of n 2 's are zero at the same time, n 3 denotes an integer of 1 to provided that when n 1 and/or n 2 are or is 2 or more, B 1 and B need not be identical, and R's need not be identical.
The pyrimidine or purine nucleic acid base in the present invention refers to thymin, uracil, cytosine, adenine, guanine, or a derivative thereof.
The nucleoside analogue and nucleotide analogue of the present invention can be synthesized in the manner described below.
Synthesis of nucleoside analogue H O TC JT-HO 0 TFA-H O H. 0PhCHO HO pyrldlne TsO 94., T Zc OH OH 1 NeSHCN HO 0 TncI, NaHMDS MeCN TsO I I THF OBn OH
H
2 /Pd-C MeOH (quant.) DMTrCI pyrdina
OMAP
(66%) 7' 8 7 Compound 1, synthesized from uridine in accordance with the literature J.A. Secrist et al., J. Am. Chem.
Soc., 101, 1554 (1979); 2) G.H. Jones et al., J. Org. Chem., 44, 1309 (1979)], was treated with tosyl chloride (TsC1) to tosylate only one of the two primary alcohols, leading to Compound 2. Compound 2 was acid hydrolyzed into a triol compound 3. Compound 3 was condensed with benzaldehyde in the presence of an acid catalyst to form a benzylidene compound 4. Compound 4 was reduced with sodium cyanoborohydride (NaBH 3 CN) in the presence of titanium tetrachloride (TiCl 4 to obtain Compound 5. This compound was reacted with sodium hexamethyldisilazide (NaHMDS) in tetrahydrofuran (THF) to obtain a bicyclo compound 6 S" (Compound I: B uracil X H, Y benzyl). When 15 Compound 6 was catalytically reduced in the presence of a palladium carbon catalyst, a diol compound 7 (Compound B U, X Y H) was obtained. Further treatment of Compound 7 with 4,4'-dimethoxytrityl chloride (DMTrC1) gave a trityl compound 8 (Compound I: B U, X DMTr, Y H).
Compounds 6, 7 and 8 can be used as starting materials for various compounds I.
Compounds having various nucleic acid bases, whether natural or nonnatural, other than uridine, can be synthesized by any of the following three methods: The first method is conversion from Compound 8. That is, Compound 8 is acetylated into Compound 9, and then reacted with 1,2,4-triazole to form Compound 10. Hydrolysis of this compound gave Compound 11 (Compound B 8 cytosine X DMTr, Y Compound 12 (Compound B benzoylcytosine (CBZ), X DMTr, Y which will become a starting material for oligonucleotide synthesis, can be easily obtained by benzoylation of Compound 11.
DMT DMT SO__
N
3 OH OAc DMTrO N 8 9 0 OMT ar DMT O OAC OH OH 12 11 V. 15 The second method is a method performed via Compound 13 which can be easily obtained from D-ribose in accordance with the literature A.G.M. Barrett et al., J. Org. Chem., 3853 (1990); 4) G.H. Jones et al., ibid., 44, 1309 (1979)]. That is, Compound 13 was led to Compound 16 by three steps, and cyclized under basic conditions to obtain a desired methylglycosyl compound 17. The OMe group at the 1position of this compound can be substituted by different natural nucleic acid bases or nonnatural nucleic acid base analogues by various methods which have already been developed. For example, a method as shown by a scheme ranging from Compound 17 to Compound 20 can be employed.
9 HO N O OH OH D-ribose MeOH, aceo ne c. HCI reflux, 19 hr SO so-.) HO Me CrO3, Py CH-i 2 cIrt, 20 min 0 0 H Me 0 0 HCHO aq., NaOH aq.
p-dioxane rt, 15 hr (37 2 steps) HO OMe 2)
HO]S
TBOPSSIOCH-3 TsCV OMAP Et3N I CHZCI 2 H 1 E1 3 N CHZCI 2 rt 13 hr HO0x0rt,17 hi 14(98%) TFA H 2 7SO
O
6 PlCH-j NaH O S.1
CH
rt HP0 i TsO OH OH THF. rt.2Ominrt, 1hr BOPSO CH 0 0H (43%) (77%) 16.
ThDPII OMAP/ Py rt, 3 hr (86%) j--j ic) I IT
OTMS
Me- TMSOTf/ 1, 1 -dichlo ro ethane
CH
3
CN
rt, 18 hr ca. 70
OH
10 The third method starts with diacetone D-glucose, which is obtained from D-glucose by one step and is commercially available. Compound 31 was prepared in accordance with a reference 5) R.D. Youssefyeh,
J.P.H.
Verheyden and-J.G. Moffatt., J. Org. Chem., 44, 1301-1309 (1979). Then, Compound 31 was treated as shown by the following scheme to protect the two primary hydroxyl groups with a t-butyldiphenylsilyl group and a p-toluenesulfonyl group progressively. The protected compound was acetylated into Compound 34.
0 H TBDPSCI Et 3
N
0 reference 5) CHCI> •H Bn r t.
67% Diacetone D-glucose 31 0 TBDPS TsCI/ DMAP/ Et 3 N TBDPS
CH
2
CI
2 oo* H Bn rt. Ts Bn 97% 32 l*l oTBDPSO- AcOH AcO/ conc. H 2
SO
4 TBDP
A
r t. Tsc 7 Bn OAc 86% 34 Compound 34 was condensed, separately, with thymine, benzoyladenine, and isobutyrylguanine activated upon trimethylsilylation (referred to as 2TMS-T, 2TMSA Bz and 3TMS.G iBU respectively), to obtain Compounds 35, 40 and 44 in high yields, as indicated by the scheme offered below.
Then, these condensates were subjected to deacetylation 11 (Compounds 36, 41, 45), five-membered ring formation (Compounds 37, 42, 46), desilylation (Compounds 38, 43, 47), and further debenzylation to form desired compounds 39.
2TMS -T or TBDPS 2TMS -ABz or Ac 3TMS .B Ts 7Oc TMSOTf/CIC H 2
CH
2
CI
34 r t.
(70-97%) T B D P S O O TsIA 3 5: B=T
B=ABZ
.4A: B=G iu aq. K 2 C0 3 MeGH r t.
(64-92%) T B D P S C S6: B=T 4+1: B=Aez 4-5: B=G 1 Bu NaHMD)S /THF TBDPSO 1 r t. n (44-100%) ~37: B=T 42: B=AEZ 4-6: B=GBu
TBAF/THF
r t.
(83-100%) H~
H
2 /I20%Pd(OH) 2 -C HO MeOH_ r t.
W~~n 96%
W
'a8: B=T 4-3: B=ABZ 47: B=GBu 3 9a: B=T 39b: B=A 8z 39c: B=G SU 12 Synthesis of oligonucleotide analogue Compound 8 is reacted with 2-cyanoethyl-N,N,N',N'tetraisopropylphosphoramidite to obtain an amidite compound 21. This compound is combined with a naturally occurring nucleoside amidite, and subjected to a DNA synthesizer to synthesize various oligonucleotide analogues. The synthesized crude products are purified using a reversed phase chromatographic column (Oligo-Pak). The purity of the purified product is analyzed by HPLC, whereby the formation of a purified oligonucleotide analogue can be confirmed.
Natural nucleoside amidite O MTrO DMTrO
Q
DNA synthesizer Various oligonucleotide 0- analogues
OH
8 IPr2
N
CN
21 At least one monomer unit as compound 8 can be contained in the oligonucleotide analogue. Alternatively, the monomer units may be present at two or more locations in the oligonucleotide analogue in such a manner as to be separated from each other.via one or more naturally 0 occurring nucleotides. The present invention makes it possible to synthesize an antisense molecule incorporating a necessary number of the nucleotide analogues (nucleoside analogues) of the invention (a necessary length of the nucleotide or nucleoside analogue) at a necessary location.
The length of the entire oligonucleotide analogue is 2 to preferably 10 to 30, nucleoside units.
13 Such an oligonucleotide analogue (antisense molecule) is minimally degradable by various nucleases, and can be existent in vivo for a long time after administration. This antisense molecule functions, for example, to form a stable double helix together with a messenger RNA, thereby inhibiting the biosynthesis of a potentially pathogenic protein; or form a triple helix in combination with doublestranded DNA in a genome to inhibit transcription to messenger RNA. The oligonucleotide analogue can also suppress the proliferation of a virus which has infected.
In light of these findings, an oligonucleotide analogue (antisense molecule) using the nucleoside analogue of the present invention is expected to be useful as drugs, including antineoplastics and antivirals, for treatment of diseases by inhibiting the actions of particular genes.
The antisense molecule using the nucleotide (nucleoside) analogue of the present invention can be formulated into parenteral preparations or liposome preparations by incorporating customary auxiliaries such as buffers and/or stabilizers. As preparations for topical application, it may be blended with pharmaceutical carriers in common use to prepare ointments, creams, liquids or plasters.
Synthesis of the nucleoside analogue and nucleotide analogue of the present invention will be described in more detail by way of the following Examples and Production Examples. In these Examples, uracil is mainly used as a base, but other purine nucleic acid bases can also be used 14 similarly.
[Example 1] Synthesis of nucleoside analogue Synthesis of 2',3'-O-cyclohexylidene-4'-(ptoluenesulfonyloxymethyl)uridine (Compound 2) To an anhydrous pyridine solution (13.5 ml) of Compound 1 (956 mg, 2.70 mmols) known in the literature, ptoluenesulfonyl chloride (771 mg, 4.05 mmols) was added at room temperature in a stream of nitrogen, and the mixture was stirred for 5 hours at 60 0
C.
To the reaction mixture, a saturated sodium bicarbonate solution was added, whereafter the reaction system was extracted with benzene 3 times. The organic phase was washed once with a saturated sodium chloride solution, and dried over anhydrous MgSO 4 The solvents were distilled off under reduced pressure, and the residue was subjected to azeotropy with benzene 3 times. The resulting crude product was purified by silica gel column chromatography (CHCl 3 :MeOH 15:1), and then reprecipitated from benzene-hexane to obtain a white powder (Compound 2) (808 mg, 1.59 mmols, 59%).
Compound 2: White powder, m.p. 104-106 0 C (benzenehexane). IR v (KBr): 3326, 2929, 2850, 1628, 1577, 1544, 1437, 1311, 1244 cm 'H-NMR (d 6 -acetone): 6 1.45-1.67 2.45 (3H, 3.71 (2H, ABq, J 12 Hz), 4.20 (2H, ABq, J 11 Hz), 4.92 (1H, d, J' 6 Hz), 5.05, 5.06 (1H, dd, J 4.6 Hz), 5.60 (1H, d, J 7 Hz), 5.75 (1H, d, J 4 Hz), 7.48 (2H, d, J 8 Hz), 7.77 (1H, d, J 8 Hz), 7.81 (2H, d, J 8 Hz), 10.10 (1H, "C-NMR (d 6 -acetone): 6 21.5, 24.1, 15 24.5, 25.5, 34.8, 36.9, 63.5, 69.7, 82.5, 84.7, 87.8, 92.9, 102.9, 115.4, 128.8, 130.8, 133.9, 142.7, 145.9, 151.3, 163.5. Mass m/z 481 (M'-H 2
O).
Anal. Calcd. for C 23
H
2 8
N
2 0 9 S1/3 H 2 0: C, 53.69; H, 5.61; N, 5.44; S, 6.22. Found: C, 53.99;H, 5.48;N, 5.42;S, 6.10.
Synthesis of 4'-(p-toluenesulfonyloxymethyl)uridine (Compound 3) The above compound 2 (107 mg, 0.21 mmol) was stirred in TFA-H 2 0 (98:2, 1 ml) for 10 minutes at room temperature.
The reaction mixture was distilled off under reduced pressure, and EtOH was added to the residue, followed by performing azeotropy 3 times. The resulting crude product was purified by silica gel column chromatography (CHCl 3 :MeOH 10:1) to obtain Compound 3 (85.0 mg, 0.20 mmol, 94%).
15 Compound 3: White powder, m.p. 119-120 0 C. IR v (KBr): 3227, 3060, 2932, 2837, 1709, 1508, 1464, 1252, 978, 835, 763, 556 cm- 1 'H-NMR (d 6 -acetone): 6 2.31 (3H, 2.84 (3H, 3.71 (2H, 4.13, 4.20 (2H, ABq, J 11 Hz), 4.28, 4.31 (1H, dd, J' 9.6 Hz), 4.36 (1H, d, J' 6 Hz), 5.54 (1H, d, J' 8 Hz), 5.75 (1H, d, J 7 Hz), 7.32 (2H, d, J 8 Hz), 7.67 (2H, d, J 8 Hz), 7.70 (1H, d, J' 8 Hz), 10.14 (1H, 1 3 C-NMR (d 6 -acetone): 6 21.5, 63.7, 70.8, 72.7, 74.6, 86.8, 88.8, 103.1, 128.8, 130.7, 133.9, 141.7, 145.8, 151.8, 163.9. Mass m/z 256 (M'-OTs).
Synthesis of 2',3'-O-benzylidene-4'-(ptoluenesulfonyloxymethyl)uridine (Compound 4) In a stream of nitrogen, benzaldehyde (2.4 ml, excess) and zinc chloride (670 mg, 5.0 mmols) were added to 16 the above compound 3 (400 mg, 0.93 mmols), and the mixture was stirred for 5 hours at room temperature. After the reaction was stopped by addition of a saturated sodium bicarbonate solution, the reaction mixture was extracted with chloroform, and washed with a saturated sodium bicarbonate solution, water, and a saturated sodium chloride solution. The organic phase was dried over anhydrous sodium sulfate. The solvents were distilled off under reduced pressure, and the residue was purified by silica gel column chromatography (CHCl 3 :MeOH 40:1) to obtain Compound 4 (380 mg, 0.74 mmol, SCompound 4: White powder. m.p. 99-102 0 C (CH 2 C1 2 hexane). 23 -26.7 0 (c 1.0, CHC1 3 IR v (KBr): 3059, 1691, 1460, 1362, 1269, 1218, 1177 cm- 1 H-NMR (CDC1,): 15 2.41 (3H, 3.25 (1H, br), 3.79 (2H, 4.19 (2H, s), 5.09 (1H, d, J 7 Hz), 5.28 (1H, dd, J 3.7 Hz), 5.60 (1H, d, J 4 Hz), 5.73 (1H, d, J 8 Hz), 5.94 (1H, 7.24 (1H, d, J 8 Hz), 7.38 (2H, d, J 9 Hz), 7.42 (5H, br), 7.69 (2H, d, J 9 Hz), 9.11 (1H, br). 13 C-NMR (CDCL 3 6 21.6, 63.5, 68.3, 77.2, 82.8, 84.2, 87.7, 94.9, 102.6, 107.5, 126.5, 127.9, 128.5, 129.7, 132.2, 135.0, 143.0,'145.0, 150.4, 163.5.
Anal. Calcd. for C 24
H
24
N
2 OgS 1/3 H 2 0: C, 55.17; H, 4.76; N, 5.36; S, 6.14. Found: C, 55.19;H, 4.66;N, 5.29;S, 5.98.
Synthesis of 3'-O-benzyl-4'-(ptoluenesulfonyloxymethyl)uridine (Compound To an acetonitrile solution (3 ml) of Compound 4 (150 mg, 0.29 mmol), sodium borocyanohydride (92 mg, 1.5 mmols) 17 was added at room temperature in a stream of nitrogen. Then, titanium tetrachloride (0.16 ml, 1.5 mmols) was added dropwise under cooling with ice, and the mixture was stirred for 15 hours at room temperature. The reaction mixture was diluted with chloroform, and washed with a saturated sodium bicarbonate solution, water, and a saturated sodium chloride solution. Then, the organic phase was dried over anhydrous sodium sulfate. After the solvents were distilled off, the residue was purified by silica gel column chromatography (CHCl 3 :MeOH 25:1) to obtain Compound 5 (112 mg, 0.22 mmol, S: Compound 5: Colorless crystals. m.p. 195-197 0
C
(AcOEt-hexane). [a]D 23 -14.6 0 (c 1.0, CHCl 3 IR v (KBr): 3033, 2885, 2820, 1726, 1470, 1361, 1274, 1175, 1119 cm-'.
15 'H-NMR (CDC13) 6: 2.40 (3H, 3.59-3.77 (3H, 4.10, 4.24 (2H, AB, J 11 Hz), 4.32 (1H, d, J 6 Hz), 4.56 (2H, 4.69 (1H, d, J 11 Hz), 5.52 (1H, d, J 6 Hz), 5.67 (1H, d, J 8 Hz), 7.24-7.29 (7H, 7.48 (1H, d, J 8 Hz), 7.70 (2H, d, J 9 Hz), 9.91 (1H. 3 C-NMR (CDCl 3 6 21.6, 63.2, 69.2, 73.6, 74.6, 78.1, 86.6, 92.9, 102.5, 127.9, S128.2, 128.3, 128.6, 129.9, 132.3, 136.9, 142.4, 145.2, 150.7, 163.8.
Anal. Calcd. for C 24
H
26
N
2 0S: C, 55.59; H, 5.05; N, 5.40; S, 6.18. Found: C, 55.41;H, 5.02;N, 5.32;S, 6.15.
Synthesis of 3'-O-benzyl-2'-O, 4'-C-methyleneuridine (Compound 6) To an anhydrous THF solution (1.5 ml) of Compound mg, 0.16 mmol), an anhydrous benzene suspension (0.7 ml) 18 of NaHMDS (3.2 mmols) was added at room temperature in a stream of nitrogen, and the mixture was stirred for 20 hours at room temperature. A saturated sodium bicarbonate solution was added to the reaction mixture, followed by extracting the mixture with CHC13. The organic phase was washed with a saturated sodium chloride solution, and then dried over anhydrous sodium sulfate. After the solvents were distilled off under reduced pressure, the resulting crude product was purified by silica gel column chromatography (CHCl 3 :MeOH 10:1), and then recrystallized from MeOH to obtain Compound 6 (41 mg, 0.10 mmol, 61%).
Compound 6: Colorless crystals. m.p. 217-219 0
C
(MeOH). [a]D 2 +108.4 0 (c 0.3, MeOH). IR v (KBr): 3059, 2951, 1688, 1459, 1271, 1053 'H-NMR (d 6 -DMSO) 6: 3.75, 15 3.85 (2H, AB, J 8 Hz), 3.77 (2H, d, J 5 Hz), 3.92 (1H, 4.44 (1H, 4.60 (2H, 5.39 (1H, t, J 5 Hz), 5.48 (1H, 7.31 (5H, 7.72 (1H, d, J 8 Hz), 11.37 (1H, s).
13 C-NMR (d 6 -DMSO) 6: 56.0, 71.1, 71.6, 75.8, 76.5, 86.5, 88.3, 100.9, 127.4, 127.6, 128.2, 137.9, 139.0, 150.0, 163.3.
Mass m/z 346 1.1).
Anal. Calcd. for C, 7
H,,N
2 0 6 C, 58.96; H, 5.24; N, 8.09.
Found: C, 58.67;H, 5.23;N, 8.05.
Synthesis of 2'-O,4'-C-methyleneuridine (Compound 7) To a methanol solution (2.5 ml) of Compound 6 (25 mg, 0.072 mmol), 10% Pd-C (25 mg) was added, and the mixture was stirred for 15 hours at atmospheric pressure in a stream of hydrogen. The reaction mixture was filtered, and the solvent was distilled off. Then, the residue was purified 19 by silica gel column chromatography (CHC1 3 :MeOH 10:1, then 5:1) to obtain Compound 7 (18.3 mg, quant.).
Compound 7: Colorless crystals. m.p. 239-243 0
C
(MeOH). [a]D 3 +92.2 0 (c 0.3, MeOH). IR v (KBr): 3331, 3091, 3059, 2961, 1689, 1463, 1272, 1049 1 H-NMR (CD 3
OD)
6: 3.76, 3.96 (2H, AB, J 8 Hz), 3.90 (2H, 4.04 (1H, 4.28 (1H, 5.55 (1H, 5.69 (1H, d, J 8 Hz), 7.88 (1H, d, J 8 Hz).
Anal. Calcd. for CloH 12
N
2 0 6 C, 46.88; H, 4.72; N, 10.93. Found: C, 46.74;H, 4.70;N, 10.84.
5'-O-(4,4'-dimethoxytrityl)-2'-0,4'-C- *..methyleneuridine (Compound 8) To Compound 7 (140 mg, 0.53 mmol), anhydrous pyridine was added, followed by performing azeotropy of the mixture 3 15 times. Then, the product was converted into an anhydrous pyridine solution (1.5 ml), and 4,4'-dimethoxytrityl chloride (210 mg, 0.63 mmol) and DMAP (6.5 mg, 0.053 mmol) were added at room temperature in a stream of nitrogen. The mixture was stirred for 5 hours at room temperature. To the reaction mixture, a saturated sodium bicarbonate solution was added, followed by extraction with CHCl 2 The organic phase was washed with water and a saturated sodium chloride solution, and then dried over anhydrous sodium sulfate.
After the solvents were distilled off under reduced pressure, the resulting crude product was purified by silica gel column chromatography (CHC1 3 :MeOH 40:1) to obtain Compound 8 (230 mg, 0.34 mmol, 66%).
Compound 8: White powder. m.p. 117-120 0 C (CHCl 3 20 [a]D 23 +17.20 (c 1.0, CHCl 3 IR v (KBr): 3393, 3101, 2885, 1689, 1464, 1272, 1047 cm 1 IH-NMR (CDC13) 6: 2.59 (1H, br), 3.56 (2H, q, J 7, 11 Hz), 3.87 (1H, d, J 7 Hz), 4.26 (1H, 4.47 (1H, 5.60 (1H, d, J 9 Hz), 5.63 (1H, 5.84 (4H, d, J 9 Hz), 7.22-7.45 (9H, 7.93 (1H, d, J 9 Hz).
[Example 2] Synthesis of nucleoside analogue Synthesis of methyl=5-0-(t-butyldiphenylsilyl)-4hydroxymethyl-2,3-O-isopropylidene-P-D-ribofuranoside (Compound 14) In a stream of nitrogen, Et 3 N (2.62 ml, 18.8 mmols) and t-butyldiphenylsilyl chloride (4.88 ml, 18.8 mmols) were ;added to an anhydrous CH 2 Cl 2 solution (40 ml) of Compound 13 (2.00 g, 8.54 mmols) known in the literature under cooling with ice, and the mixture was stirred for 13 hours at room 15 temperature. To the reaction mixture, a saturated sodium bicarbonate solution was added, whereafter the reaction system was extracted with AcOEt 3 times. The organic phase was washed once with a saturated sodium chloride solution, and then dried over anhydrous Na 2
SO
4 The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (hexane:AcOEt 5:1) to obtain colorless oily matter (Compound 14) (2.82 g, 5.98 mmols,
D
16.20 (c 0.52, CHCl 3 IR v (KBr): 3510, 3061, 2938, 2852, 1465, 1103 cm 1 'H-NMR (CDC13) 6: 1.09 (9H, 1.28 (3H, 1.49 (3H, s), 3.22 (3H, 3.67, 3.76 (2H, AB, J 11 Hz), 3.88, 3.93 (2H, AB, J 11 Hz), 4.49 (1H, d, J 6 Hz), 4.57 (1H, d, J 6 21 Hz), 4.93 (1H, 7.38 7.43 (6H, 7.67 (4H, d, J 7 Hz).
13 C-NMR (CDCl 3 6c: 19.2, 24.4, 25.9, 26.9, 55.0, 62.9, 64.8, 82.2, 85.9, 88.7, 108.6, 112.6, 127.8, 129.9, 133.0, 135.7.
Anal. Calcd. for C 26
H
36 0OSi'1/4 H 2 0: C, 65.45; H, 7.71. Found: C, 65.43; H, 7.59.
Synthesis of methyl=5-0-(t-butyldiphenylsilyl)-2,3-Oisopropylidene-4-(p-toluenesulfonyloxymethyl)3ribofuranoside (Compound In a stream of nitrogen, Et 3 N (3.92 g, 28.0 mmols), p-toluenesulfonyl chloride (1.34 g, 7.22 mmols), and 4dimethylaminopyridine (90 mg, 0.72 mmol) were added to an anhydrous CH 2 Cl 2 solution (15 ml) of Compound 14 (2.13 g, 4.51 mmols), and the mixture was stirred for 17 hours at 15 room temperature. To the reaction mixture, a saturated sodium bicarbonate solution was added, whereafter the reaction system was extracted with AcOEt 3 times. The organic phase was washed once with a saturated sodium chloride solution, and then dried over anhydrous Na 2
SO
4 The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (hexane:AcOEt 10:1) to obtain colorless oily matter, Compound 15 (2.76 g, 4.42 mmols, [a]D 7 3.820 (c 0.56, CHCl 3 IR v (KBr): 2934, 2852, 1369, 1104 cm 'H-NMR (CDCl 3 6: 1.02 (9H, 1.20 (3H, 1.32 (3H, s), 2.41 (3H, 3.09 (3H, 3.51, 3.77 (2H, AB, J 10 Hz), 4.34 (1H, d, J 6 Hz), 4.25, 4.39 (2H, AB, J 9 Hz), 4.47 22 (1H, d, J =6 Hz), 4.77 (1H, 7.28, 7.81 (4H, AB, J 9 Hz), 7.39 -7.44 (6H, in), 7.62 7.65 (4H, in), 7.81 (2H, d, J 9 Hz).
1 3 C -NMR (CDC1 3 8. 19.2, 21.6, 24.5, 25.8, 26.8, 54.9, 62.7, 68.8, 81.9, 85.6, 87.5, 108.7, 112.8, 127.7, 127.8, 128.2, 129.6, 129.9, 132.9, 135.6, 144.4.
Anal. Calod. for C 3 3
H
42
O
8 SSi: C, 63.23; H, 6.75; S, 5.11.
Found: C, 62.99; H, 6.53; S, 5.13.
Synthesis of methyl=5-0-(t-butyldiphenylsilyl)- 4 -(p toluenesulfonyloxymfethyl) -p-D-ribofuranoside (Compound 16) 4~ Trifluoroacetic acid (14 ml) was added to a THF-H 2 0 S[11 ml, 8:3 (v/v)I solution of Compound 15 (645 mg, 1.03 mmol at room temperature, and the mixture was stirred for 20 min 15 utes at room temperature. The solvents were distilled off un der reduced pressure, and the resulting crude product was pur ified by silica gel column chromatography (hexane:AcOEt 1) to obtain colorless oily matter, Compound 16 (464 mng, 0.79 inmol, [KID 17 -3 5. 8 0 1 90,CHCl 3 IR v (KBr) :3 4 99, 3 0 51, 2931, 2840, 1594, 1468,1362, 1109cm'1.
1 H-NMR (CDCl 3 1.02(9H,s), 2.42(3H,s), 3.16(3H,s), 3.54, 3.70(2H,AB,J=1OHz), 3.97(1H,d,J=5Hz), 4.18(1H,d,J=5Hz), 4.26, 4.39(2H,AB,J=1OHz), 4.73(1H,s), 7.30(2H,d,J=8Hz), 7.36-7.44 7 .59-7.66(4H,mr),7.78(2H,d,J=8Hz). 1 3 C -NMR (CDCl 3 8c: 19.2, 21.6, 26.7, 55.2, 66.5, 69.6, 74.0, 75.2, 76.5, 84.8, 107.5, 127.7, 128.0, 129.8, 132.6, 132.7, 132.8, 135.5, 135.6, 144.9.
Anal. Calcd for C 3 0
H
3 8 SSiO 8 -1/4 H 2 0:C,60.
9 4; H,6.56.Found:C, 23 60.94; H,6.43.
Synthesis of methyl=5-O-(t-butyldiphenylsilyl)-2-0, 4 C-methylene-P-D-ribofuranoside (Compound 17) and methyl=5-O-(t-butyldiphenylsilyl)-3-O,4-C-methylene- -D-ribofuranoside (Compound 18) In a stream of nitrogen, a benzene suspension (1.6 ml) of NaHMDS (3.30 mmols) was added to an anhydrous THF solution (4 ml) of Compound 16 (194 mg, 0.33 mmol) at room temperature, and the mixture was stirred for 1 hour at room temperature. After a saturated sodium bicarbonate solution was added to the reaction mixture, the reaction solvents were distilled off, and the residue was extracted with AcOEt 3 times. The organic phase was washed once with a saturated sodium chloride solution, and then dried over anhydrous 15 Na 2
SO
4 The solvent was distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (hexane:AcOEt 5:1) to obtain colorless oily matter, Compound 17 (48 mg, 0.116 mmol, and colorless oily matter, Compound 18 (59 mg, 0.142 mmol, 43%).
Compound 17: IR v (KBr):3438, 3064, 1103, 1036cm- 1 1 H-NMR (CDC1 3 )5 :1.08(9H,s), 2.04(1H,br 3.39(3H,s), 3.65, 3.98(2H,AB,J=8Hz), 3.95,4.02(2H,AB,J=12Hz), 4.02(1H,s), 4.30 4.79(1H,s), 7.38-7.46(6H,m), 7.65-7.69(4H,m).
13 C-NMR (CDCl 3 6: 19.2, 26.7, 55.0, 60.7, 71.2, 73.1, 79.9, 8 104.3, 127.8, 129.9, 130.0, 132.9, 135.6, 135.7.
Anal.Calcd for C 23
H
30 0OSi'1/4 H 2 0:C,65.68; H,7.34.Found:C,65.9 8; H,7.23.
24 Compound 18: IR v (KBr) :3456 3058, 2938, 2852, 1467, 1108cm- 1 'H-NMR (CDCl 3 1.10(9H,s) 3.26(3H, s) 3.71(2H,s) 4.02(1H, d,J=6Hz), 4.35,4.95(2H,d,J=7Hz), 5.O1(1H,s), 5.11(1H,d,J=6H 7.38-7.44(6H,m), 7.66(4H,d,J=7Hz).
13C-NMR(CDC1 3 )81-:19.3, 26.8, 55.4, 63.7, 75.1, 77.9, 84.5, 86.3, 111.9, 127.8, 128.0, 129.9, 132.9, 133.0, 135.6, 135.8, 135.9.
Anal.Calcd for C 2 3
H
3 1 0 OSi*1/4 H 2 0:C,65.91; H,7.34.Foufld:C, 66.07; H,7.14.
Synthesis of methyl=3-0-acetyl-5-O-(t- 00. 0butyldiphenylsilYl) 4-C-methylene-j3-Dribofuranoside (Compound 19) In a stream of nitrogen, acetic anhydride (0.38 ml, .0 15 4.08 mmols) and 4-dimethylaminopyridine (21 mg, 0.170 mmols) o. .were added to an anhydrous pyridine solution (10 ml) of %oe~oCompound 17 (704 mg, 1.70 mmnols) at room temperature, and the mixture was stirred for 3 hours at room temperature.
0 After a saturated sodium bicarbonate solution was added to the reaction mixture, the system was extracted with AcOEt 3 times. The organic phase was washed once with a saturated sodium chloride solution, and then dried over anhydrous Na 2
SO
4 The solvents were distiLlled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (hexane:AcOEt to obtain colorless oily matter, Compound 19 (665 mg, 1.46 minols, 86%).
1 -34.3 0 (c=0.93,CHCl 3 IR v (KBr):3438, 3064, 2934, 1749, 1468, 1103, 1036cm 1 1 H-NMR (CDC13)6: 0.99(9H,s), 1.97(3H,s), 3.34(3H,s), 3.69, 3.86(2H,AB,J=8Hz), 3.86(2H,s), 4.17(1H,s), 4.77(1H,s), 5.06 7.28-7.39(6H,m), 7.58-7.63(4H,m).
13C-NMR(CDC1 3 19.3, 20.9, 26.7, 55.0, 60.3, 72.0, 73.6, 78.3, 85.3, 104.4, 127.7, 129.8, 133.0, 135.6, 169.8.
Anal.Calcd for C 2 sH 32
O
6 Si'1/4 H 2 0:C,65.12; H,7.10. Found:C, 65.27;H,7.00.
Synthesis of 5'-O-(t-butyldiphenylsilyl)-2'-O,4'-Cmethylene-5-methyluridine (Compound In a stream of nitrogen, 0,0'bistrimethylsilylthymine (154 mg, 0.598 mmols) was added to an anhydrous CH 3 CN solution (2 ml) of Compound 19 (109.2 g, 0.239 mmol) at room temperature. Then, a 1,1-dichloroethane (0.31 ml) solution of trimethylsilyltrifluoromethane sulfonate (0.82 ml, 8.74 mmols) was added under cooling with ice, and the mixture was stirred for 18 hours at room temperature. The reaction mixture was diluted with CH2C12, and a saturated sodium bicarbonate solution was added, followed by extracting the system with AcOEt 3 times. The organic phase was washed once with a saturated sodium chloride solution, and then dried over anhydrous Na 2
SO
4 The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (hexane:AcOEt 3:1) to obtain colorless oily matter, Compound 20 (87.7 mg, 0.173 mmol, IR v (KBr):3048, 2935, 2852, 1749, 1466, 1369, 1234, 1108, 1040 cm 1 26 1 H-NMR (CDCl 3 1.06(9H,s), 1.94(3H,s), 2.98(1H,br 3.63, 4.00(2H,AB,J=10Hz), 3.72(1H,d,J=7Hz), 3.82-3.84(2H,m), 4.30 5.25(1H,s), 7.40-7.46(6H,m), 7.60(4H,d,J=6Hz), 7.66 9.68(1H,br s).
[Example 3] Synthesis of nucleoside analogue (different method) Synthesis of 3-O-benzyl-5-0-t-butyldiphenylsilyl- 4 (hydroxymethyl)-1,2-O-isopropylidene-a-Derythropentofuranose (Compound 32) In a stream of nitrogen, triethylamine (3.71 ml, 26.6 mmols) and t-butyldiphenylsilyl chloride (6.94 ml, 26.7 mmols) were added, under cooling with ice, to a methylene chloride solution (50 ml) of Compound 31 (2.50 g, 8.08 mmols) prepared in accordance with the aforementioned reference The mixture was stirred for 10.5 hours at room temperature. After a saturated sodium bicarbonate solution was added to the reaction mixture, the system was extracted with ethyl acetate. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (AcOEt-hexane: 1:4 1:3) to obtain a white solid, Compound 32 (2.97 g, 5.41 mmols, 67%).
m.p. 98-99 0 C (hexane). 20 +54.8 0 (c 1.12, acetone).
IR v max (KBr) 3553, 2936, 1463, 1379, 1107 cm 1 1 H-NMR(CDC1 3 1.13 (9H, 1.50 (3H, 1.78 (3H, 2.56 (1H, t, J 7 Hz), 3.82, 3.92 (2H, AB, J 11 Hz), 3.94 (2H, t, 27 J 6 Hz), 4.57 (1H, d, J 5 Hz), 4.64, 4.95 (2H, AB, J 12 Hz), 4.83 (1H, dd, J 4, 5 Hz), 5.95 (1H, d, J 4 Hz), 7.44- 7.55 (11H, 7.72-7.78 (4H, 13 C-NMR(CDC1 3 )b6: 19.2, 26.2, 26.5, 26.8, 63.2, 65.4, 72.5, 77.9, 79.1, 87.4, 104.4, 113.7, 127.6, 127.7, 128.0, 128.5, 129.5, 129.7, 132.9, 133.1, 134.7, 135.5, 137.2.
Anal. Calcd for C 3 2
H
40 0 6 Si C, 70.04; H, 7.38. Found C, 70.19; H, 7.35.
Synthesis of 3-O-benzyl-5-O-(t-butyldiphenylsilyl)-4- (p-toluenesulfonyloxymethyl) -1,2-a-Derythropentofuranose (Compound 33) In a stream of nitrogen, triethylamine (395 p1, 2.83 mmols), p-toluenesulfonyl chloride (139.2 mg, 0.730 mmol), and 4-dimethylaminopyridine (8.92 mg, 0.0730 mmols) were added, under cooling with ice, to a methylene chloride solution of Compound 32 (250 mg, 0.456 mmol). The mixture Swas stirred for 15.5 hours at room temperature. After a saturated sodium bicarbonate solution was added to the reaction mixture, the system was extracted with ethyl acetate. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate.
The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (AcOEt-hexane: 1:6) to obtain light yellow oily matter, Compound 33 (310.6 mg, 0.442 mmol, 97%).
[a]D 20 +16.0 0 (c 0.44, acetone). IR v max (KBr) 2935, 1595, 1462, 1363, 1174, 1106 cm"'.
1 H-NMR(CDCl 3 1.08 (9H, 1.40 (3H, 1.46 (3H, 2.48 28 (3H, 3.68, 3.83 (2H, AB, J 11 Hz), 4.45 (2H, dd, J 4, Hz), 4.64, 4.81 (2H, AB, J 12 Hz), 4.68 (1H, dd, J 4, Hz), 5.81 (1H, d, J 4 Hz), 7.32 (2H, d, J 8 Hz), 7.42-7.72 7.82, (2H, d, J 8 Hz), 7.66 (4H, 7.72 (2H, d, J 8 Hz).
13 C-NMR(CDC13)8,: 19.1, 21.5, 26.1, 26.4, 26.7, 64.4,70.0, 72.5, 78.1, 78.9, 85.4, 104.2, 113.6, 127.3, 127.7,127.9, 128.0, 128.4, 129.6, 129.7, 129.8, 132.7, 132.8, 135.5, 137.2, 144.4. MS(EI) m/z 646 High-MS(EI): Calcd for C 35
H
37 ,OSSi 645.1978, Found 645.1969.
Synthesis of 1,2-di-0-acetyl-3-O-benzyl-5-O-tbutyldiphenylsilyl-4-(p-toluenesulfonyloxymethyl)-aand D-ribofuranose (Compound 34) In a stream of nitrogen, acetic anhydride (6.0 ml, 63.6 mmols) and concentrated sulfuric acid (56 1.10 .mol) were added to an acetic acid solution (56 ml) of Compound 34 (3.70 g, 5.27 mmols). The mixture was stirred for 2 hours at room temperature. The reaction mixture was emptied into iced water (300 ml), and stirred for 30 minutes.
After a saturated sodium chloride solution was added, the mixture was extracted with ethyl acetate. Then, the organic phase was dried over magnesium sulfate. The solvents were distilled off, and the resulting crude product was purified by silica gel column chromatography (AcOEt-hexane, 2:1) to obtain yellow oily matter, Compound 34 (3.36 g, 4.53 mmols, as an a-3 mixture.
IR v max (KBr) 2934, 2863, 1751, 1365, 1217, 1106 cm-.
1H-NMR (CDC13) [-configuration] 8: 1.02 (9H, 1.77 (3H, s), 29 1.98 (3H, 2.39 (3H, 3.61, 3.76 (2H, AB, J 11 Hz), 4.21-4.58 (5H, 5.26 (1H, d, J 5 Hz), 5.94 (1H, 7.15- 7.59 (13H, 7.58-7.66 (4H, 7.72 (2H, d, J 8 Hz). [aconfiguration] d: 1.02 (9H, 1.98 (3H, 2.36 (3H, s), 3.48, 3.58 (2H, AB, J 11 Hz), 4.21-4.58 (5H, 5.12 (1H, dd, J 5, 6 Hz), 6.33 (1H, d, J 5 Hz), 7.15-7.59 (13H, m), 7.58-7.66 (4H, 7.72 (2H, d, J 8 Hz).
1 3 C-NMR (CDCl 3 6c: 14.2, 19.3, 20.5, 20.8, 21.6, 26.7, 26.8, 60.3, 64.8, 69.1, 73.6, 74.1, 78.6, 85.3, 97.4, 127.4, 127.6, 127.7, 127.8, 127.9, 128.0, 128.2, 128.3, 128.4, 129.5, 129.6, 1289.8, 129.9, 132.4, 132.8, 132.9, 135.4, 135.5, 135.6, 136.9, 144.5, 168.7, 169.4. High-MS(FAB) Calcd for C 40
H
46
N
2
,O
1 SSiNa 769.2479, Found 769.2484.
Synthesis of 2'-O-acetyl-3'-O-benzyl-5'-O-tmethyluridine (Compound In a stream of nitrogen, 2TMS'T (1.04 g, 4.03 mmols) and trimethylsilyltrifluoromethane sulfonate (730 pl, 4.03 mmols) were added, under cooling with ice, to a 1,2dichloroethane solution (26 ml) of Compound 34 (1.88 g, 2.52 mmols), and the mixture was stirred for 17 hours at room temperature. A saturated sodium bicarbonate solution was added to the reaction mixture, and the system was filtered through Celite, followed by extracting the mother liquor with chloroform. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under reduced pressure, and the resulting crude product was 30 purified by silica gel column chromatography (AcOEt-hexane, 2:3) to obtain a white powder, Compound 35 (2.00 g, 2.44 mmols, 97%).
m.p. 70-71.5 0 C. [a]D 24 +4.58 0 (c 1.25, acetone).
IR v max (KBr) 3059, 2934, 1694, 1465, 1368, 704 cm- 1 'H-NMR(CDC1 3 1.18 (9H, 1.63 (3H, d, J 1 Hz), 2.10 (3H, 2.42 (3H, 3.73, 3.86 (2H, AB, J 11 Hz), 4.12, 4.20 (2H, AB, J 11 Hz), 4.44, 4.57 (2H, AB, J 11 Hz), 4.45 (1H, d, J 6 Hz), 5.38 (1H, t, J 6 Hz), 6.02 (1H, d, J 6 Hz), 7.21-7.60 (13H, 7.62-7.69 (7H, 8.91 (1H, br s).
13 C-NMR(CDCl 3 )6c: 11.9, 19.3, 20.6, 21.6, 27.0, 65.3, 68.6, 74.1, 74.8, 77.2, 77.3, 86.0, 86.4, 111.6, 127.9, 128.0, 128.2, 128.5, 129.7, 130.1, 130.2, 131.8, 132.3, 132.5, 135.3, 135.5, 135.6, 136.8, 144.9, 150.2, 163.4, 170.2. MS (FAB) m/z 813 Anal. Calcd for C 43
H
48
N
2 0o 1 SSi'2H20: C, 60.83; H, 6.17; N, 3.30.
*Found C, 60.55; H, 5.78; N, 3.22.
Synthesis of (Compound 36) Potassium carbonate (12.75 mg, 0.0923 mmol) and water ml) were added, under cooling with ice, to a methyl alcohol solution (4 ml) of Compound 35 (250 mg, 0.308 mmol), and the mixture was stirred for 22 hours at room temperature.
Under cooling with ice, acetic acid was added to the reaction mixture to neutralize it, whereafter the solvent was distilled off under reduced pressure. After water was added to the residue, the mixture was extracted with ethyl 31 acetate. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate.
The solvent was distilled off under reduced pressure, and then the resulting crude product was purified by silica gel column chromatography (AcOEt-hexane, 3:2) to obtain a white powder, Compound 36 (216.7 mg, 0.283 mmol, 92%).
mp. 74 77 0 C. [a]D 23 5.150 (c 1.23, CHCl 3 IR v max (KBr) 3048, 2934, 1695, 1363, 1181, 1108, 977, 819, 704 cm- 1 'H-NMR (CDC13) d: 1.05 (9H, 1.65 (3H, d, J 1 Hz), 2.39 (3H, 3.04 (1H, br d, J 9 Hz), 3.72 (2H, 4.17 (2H, s), 4.18 (1H, d, J 5 Hz), 4.24-4.32 (1H, 4.54, 4.62 (2H, AB, J 11 Hz), 5.62 (1H, d, J 6 Hz), 7.19-7.69 (20H, 8.46 (1H, br s).
1 3 C-NMR (CDC13) 6c: 12.1,19.4, 26.9, 58.8, 72.0, 72.2, 75.8, 76.7, 87.4, 88.8, 110.4, 127.7, 12.79, 128.1, 128.2, 128.5, 128.7, 129.8, 130.0, 130.1, 132.2, 134.3, 135.3, 135.5, 136.8, 149.8, 163.9. MS(FAB) m/z 771 Anal. Calcd for C 41
H
46
N
2 OSSi: C, 63.41; H, 6.16; N, 3.51; S, 3.95.
Found C, 63.87; H, 6.01; N, 3.63; S, 4.16.
Synthesis of 2'-0,4'-C-methylene-5-methyluridine (Compound 37) In a stream of nitrogen, sodium bis(trimethylsilyl)amide (1.0 M in THF, 8.47 ml, 8.47 mmols) was added, under cooling with ice, to a tetrahydrofuran solution (30 ml) of Compound 36 (1.86 g, 2.42 mmols), and the mixture was stirred for 1 hour at room temperature. A saturated sodium bicarbonate solution (14 ml) was added to 32 the reaction mixture, and then the solvent was distilled off under reduced pressure. After water was added to the residue, the mixture was extracted with chloroform. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (AcOEt-hexane, 2:3) to obtain a white powder, Compound 37 (1.42 g, 2.37 mmols, 98%).
m.p. 70.5-72 0 C. [a]D 2 2 +52.47 0 (c 1.025, acetone). IR v max (KB r) 2936, 1694, 1465, 1275, 1106, 1055, 809, 704cm- 1 'H-NMR(CDCl 3 1.21 (9H, 1.76 (3H, 3.88, 4.07(2H, AB, J 8 Hz), 4.07, 4.15 (2H, AB, J 11 Hz), 4.16 (1H, 4.66, 4.80 (2H, AB, J 11 Hz), 4.76 (1H, 7.34-7.79 (16H, m) 10.0 (1H, br MS (FAB) m/z 599 Anal. Calcd for C 34
H
3 ,NO,0Si'2H20: C, 64.33; H, 6.03; N, 4.41.
*l Found C, 64.58; H, 6.15; N, 4.28.
Synthesis of 3'-O-benzyl-2'-O,4'-C-methylene-5methyluridine (Compound 38) In a stream of nitrogen, tetrabutylammonium fluoride co*. (1.0 M in THF, 379 xl, 0.379 mol) was added to a tetrahydrofuran solution (1 ml) of Compound 37 (188.7 mg, 0.316 mmol), and the mixture was stirred for 2.5 hours at room temperature. The reaction mixture was distilled under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (AcOEt-hexane, to obtain a white powder, Compound 38 (94.6 mg, 0.262 mmol, 83%).
33 IR v max (KBr) :3424, 3183, 3063, 2950, 1691, 1463, 1273, 1057, 734cm-1.
'H-NMR (CDCl 3 1.90(3H1, d, J 1 Hz) 3.83, 4.05(2H, AB, J 8 Hz), 3.93, 4.02(2H1, AB, J 12 Hz), 3.94(1H, 4.53(111, 4.56, 4.58(21, AB, J 12 Hz), 5.65 (1H, 7.32(5H, s), 7. 44 (1H, d, J 1 Hz) High-MS (El) Calcd for C 18
H
2 0 N0 6 :360.1321, Found :360.1312.
Synthesis of (Compound 39a) To a methyl alcohol solution (4 ml) of Compound 38 (86.5 mg, 0.240 mmol), 20% Pd(OH) 2 -C (86.5 mg) was added, and the mixture was stirred for 14.5 hours at atmospheric pressure in a stream of hydrogen. The reaction mixture was ~.filtered, and then the solvent was distilled off under reduced pressure to obtain colorless crystals, Compound 39 (62.5 mg, 0.230 mmol, 96%).
mp. 194-195 0 C. CC)D 20 53.70 (c 02, EtOH) IR v max MKr) 3323, 3163, 3027, 2889, 2826, 1689, 1471, 1276, 1057 c-1.
'H-NMR (CD 3 0D) 6:1.89 (311, q, J 1 Hz) 3.74, 3.95 (2H, 0 0: AB, J 8 Hz) 3.90 (111, 4. 07 (111, s) 4. 26 (1H1, s) 5.53 (1H1, s) 7.74 (1H1, d, J 1 Hz).
1 3 C -NMR (CD 3 0D) 6 c: 12.6, 57.6, 70.3, 72.4, 80.8, 88.3, 90.4, 110.7, 136.8, 151.8, 166.5.
[Example 4]1 Synthesis of 2'-O--acetyl-3'-0-benzyl-5'-0-tbutylipheylsillV 'p-toluenesulfonyloxymethyl-N 6 benzoyladenosine (Compound 34 In a stream of nitrogen, a 1,2-dichloroethane solution (5.0 ml) of Compound 34 (250 mg, 0.336 mmol) and trimethylsilyltrifluoromethane sulfonate (6.7 il, 0.0336 mmols) were added, at room temperature, to 2TMS*A
B
z (128.7 mg, 0.336 mmol) prepared in accordance with a reference 6) (H.
Vorbrggen, K. Krolikiewicz and B. Bennua, Chem., Ber., 114, 1234-1255 (1981)). The mixture was heated under reflux for 26 hours. After a saturated sodium bicarbonate solution was added to the reaction mixture, the system was extracted 3 times with methylene chloride. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under S reduced pressure, and the resulting crude product was purified by silica gel column chromatography (CHC13-MeOH, 1:3) to obtain a white powder, Compound 40 (234.5 mg, 0.253 mmol, m.p. 77-78 0 C (AcOEt/hexane). [a] 24 13.2 o (c 1.00, CHC1,).
IR v max (KBr): 3058, 2934, 1749, 1703, 1606, 1105 cm-.
'1H-NMR (CDC1 3 0.99 (9H, 2.04 (3H, 2.38 (3H, 3.7 20 4, 3.85 (2H, AB, J 11 Hz), 4.31, 4.43 (2H, AB, J 11 Hz), 4.
52, 4.58 (2H, AB, J 11 Hz), 4.81 (1H, d, J 6 Hz), 5.94 (1H, d, J 6 Hz), 6.04 (1H, d, J 5 Hz), 7.18 7.61 (20H, m), 7.69 (2H, d, J 8 Hz), 7.99 (1H, 8.01 (2H, d, J 7 Hz), 8.56 (1H, 8.99 (1H, br 1 3 C-NMR (CDC13) 6c: 19.1, 20.5, 21.5, 26.7, 64.1, 68.4, 74.0, 74.6, 77.9, 86.57, 86.64, 123.4, 127.7, 127.8, 127.9, 128.1, 128.5, 128.8, 129.6, 129.9, 132.0, 132.3, 132.6, 132.7, 133.5, 135.4, 135.5, 136.8, 142.0, 144.7, 149.6, 151.2, 152.6, 164.5, 169.8. MS(FAB) m/z 926 35 Synthesis of 4'-p-toluenesulfonyloxymethyl-N 6 -benzoyladenosine (Compound 41) To a methyl alcohol solution (3.0 ml) of Compound (167.9 mg, 0.182 mmol), potassium carbonate (15.0 mg, 0.109 mmol) was added at room temperature, and the mixture was stirred for 15 minute at room temperature. Concentrated hydrochloric acid was added to the reaction mixture to neutralize it, whereafter the system was extracted 3 times with methylene chloride. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under "reduced pressure, and the resulting crude product was purified by silica gel column chromatography (CHCl 3 -MeOH, 15 30:1) to obtain a white powder, Compound 41 (140.5 mg, 0.160 mmol, 88%).
m.p. 82-83 0 C (AcOEt-hexane). 25 6.020 (c 0.96, CHC 3 1).
IR v max (KBr) 3306, 3066, 2935, 2859, 1701, 1611 cm- 1 1 H-NMR (CDCl 3 6: 0.98 (9H, 2.37 (3H, 3.76 (2H, 4.
39, 4.45 (1H, AB, J 11 Hz), 4.54 (1H, d, J 6 Hz), 4.67, 4.
76 (2H, AB, J 11 Hz), 4.85 (1H, dd, J 5, 6 Hz), 5.79 (1H, d, J 5 Hz), 7.20 7.58 (21H, 7.73 (2H, d, J 8 Hz), 7.80 (1H, 7.96 (2H, d, J 8 Hz), 8.49 (1H, 9.18 (1H, br s).
1 3 C-NMR (CDCl 3 6c: 19.1, 21.6, 26.8, 64.4, 68.9, 74.1, 74.6, 79.2, 86.8, 89.8, 123.1, 127.7, 127.8, 128.0, 128.2, 128.4, 1 28.6, 128.8, 129.7, 130.0, 132.1, 132.5, 132.6, 132.8, 133.4, 135.4, 135.5, 136.8, 142.1, 144.8, 149.4, 152.3, 164.5.
Synthesis of 36 2'-0,4'-C-methylene-N 6 -benzyladenosine (Compound 42) In a stream of nitrogen, sodium bis(trimethylsilyl)amide (1.0 M in THF, 0.58 ml, 0.572 mmol) was added to a tetrahydrofuran solution (8.0 ml) of Compound 41 (210.5 mg, 0.238 mmol) at room temperature, and the mixture was stirred for 3 hours at room temperature. A saturated sodium bicarbonate solution was added to the reaction mixture, and then the system was extracted 3 times with methylene chloride. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (CHC13-MeOH, 30:1) to obtain a white powder, Compound 42 (169.5 mg, 0.238 mmol, quant.).
mp. 80- 81 0 C. IR v max (KBr) 3259, 3064, 2932, 2858, 1703, 1607 cm 1 'H-NMR(CDC1 3 1.07 (9H, 3.95, 4.10 (2H, AB, J 8 Hz), 4.
02 (2H, d, J 8 Hz), 4.56, 4.64 (2H, AB, J 12 Hz), 4.26 (1H, 20 4.86 (1H, 6.14 (1H, 7.26 7.70 (18H, 8.04 (2 H, d, J 7 Hz), 8.22 (1H, 8.78 (1H, 9.18 (1H, brs).
1 3 C-NMR(CDCl 3 6c: 19.2, 26.5, 26.8, 29.7, 59.2, 72.4, 72.6, 7 76.8, 86.7, 88.6, 123.4, 127.7, 127.8, 127.9, 128.1, 128.4, 128.8, 129.5, 130.0, 132.4, 132.5, 132.8, 133.5, 134.8, 135.2, 135.5, 135.6, 136.8, 140.4, 152.7.
Synthesis of 3'-O-benzyl-2'-0,4'-C-methylene-N 6 benzoyladenosine (Compound 43) Tetrabutylammonium fluoride (1.0 M in THF, 1.0 ml, 37 mmol) was added, at room temperature, to a tetrahydrofuran solution (7.0 ml) of Compound 42 (173.6 mg, 0.244 mmol), and the mixture was stirred for 25 minutes at room temperature. The reaction mixture was distilled under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (CHCl 3 -MeOH, 15:1) to obtain a white powder, Compound 43 (115.4 mg, 0.244 mmol, quant.).
mp. 154 155 0 C (Et20). IR v max(KBr): 3339, 2944, 1701, 1611 cm H-NMR(CDCl 3 3.91, 4.13 (2H, AB, J 8 Hz), 3.93, 4.01 (2H, AB, J 12 Hz), 4.38 (1H, 4.64 (1H, 4.85 (1H, s), 6.08 (1H, 7.29 (1H, 7.51 (2H, d, J 8 Hz), 7.58 (1H, d, J 7 Hz), 8.05 (2H, d, J 7 Hz), 8.14 (1H, 8.75 (1H, 9.50 (1H, br s).
13 C-NMR(CDC1 3 )6c: 57.1, 72.4, 77.0, 77.1, 86.9, 88.6, 122.9, 127.6, 128.0, 128.1, 128.4, 128.7, 132.8, 133.5, 136.9, 140.5, *149.8, 150.5, 152.8, 165.0.
[Example 20 Synthesis of 2'-O-acetyl-3'-O-benzyl-5'-O-tbutyldiphenylsilyl-4'-p-toluenesulfonyloxymethyl-N isobutyrylguanosine (Compound 44) In a stream of nitrogen, a 1,2-dichloroethane solution (5.0 ml) of Compound 4 (250 mg, 0.336 mmol) and trimethylsilyltrifluoromethane sulfonate (6.7 xl, 0.0336 mmol) were added, at room temperature, to 3TMS.G iBU (146.8 mg, 0.336 mmol) prepared in accordance with the aforementioned reference The mixture was heated under reflux for 38 hours. After a saturated sodium bicarbonate solution was added to the reaction mixture, the system was extracted 3 times with methylene chloride. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (CHC1 3 -MeOH, 30:1) to obtain a white powder, Compound 44 (213.6 mg, 0.235 mmol, m.p. 96-97 0 C (AcOEt-hexane). [a]D 24 -11.090 (c 0.97, CHCl 3 IR v max (KBr): 3152, 3065, 2934, 1746, 1681, 1606 cm- 1 'H-NMR (CDCI 3 d: 0.96 (9H, 1.10 (3H, d, J 9 Hz), 1.13 (3H, d, J 9 Hz), 1.98 (3H, 2.36 (3H, 2.48 (1H, m), 3.65, 3.72 (2H, AB, J 11 Hz), 4.23, 4.43 (2H, AB, J 11 Hz), 4.47 (2H, 4.63 (1H, d, J 6 Hz), 5.74 (1H, t, J 6 Hz), 5.96 (1H, d, J 6 Hz), 7.14 7.68 (20H, 9.15 (1H, 12.
(1H, s).
'"C-NMR(CDCl)c: 19.1, 19.3, 19.4, 20.8, 21.9, 27.0, 27.2, 36.
64.5, 68.9, 74.4, 74.9, 76.7, 86.1, 86.7, 122.0, 127.6, 12 20 7.7, 127.9, 128.1, 128.3, 128.4, 128.8, 130.1, 130.4, 132.3, 132.7, 132.9, 135.7, 135.8, 137.3, 137.8, 145.2, 147.8, 148.5, 156.2, 170.2, 178.8.
Synthesis of 3'-O-benzyl-5'-0-t-butyldiphenylsilyl- 4'-p-toluenesulfonyloxymethyl-N2-isobutyrylguanosine (Compound To a methyl alcohol solution (3.0 ml) of Compound 44 (137.0 mg, 0.151 mmol), potassium carbonate (15.8 mg, 0.113 mmol) was added at room temperature, and the mixture was 39 stirred for 45 minutes at room temperature. Concentrated hydrochloric acid was added to the reaction mixture to neutralize it, whereafter the system was extracted 3 times with methylene chloride. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (CHCl 3 -MeOH, 30:1) to obtain a white powder, Compound 45 (83.4 mg, 0.097 mmol, 64%).
mp. 102-103 0 C (AcOEt-hexane). [a] 25 2.00 (c 0.40, CHC1 3 IR v max(KBr): 3166, 2932, 1684, 1607 cm- 1 H-NMR (CDCl 3 6: 0.90 (9H, 1.09 (3H, d, J 7 Hz), 1.13 (3H, d, J 7 Hz), 2.30 (1H, 2.37 (3H, 3.71, 3.76 (2H, AB, J 11 Hz), 4.32, 4.48 (2H, AB, J 11 Hz), 4.35 (1H, d, J 6 Hz), 4.63, 4.90 (2H, AB, J 12 Hz), 4.96 (1H, t, J 6 H 5.67 (1H, d, J 7 Hz), 7.17 7.71 (20H, 8.82 (1H, s), 12.05 (1H, br s).
3 C-NMR(CDC1 3 )8c: 18.7, 19.0, 21.6, 26.5, 36.2, 63.5, 69.1, 20 73.7, 74.3, 78.8, 86.2, 89.5, 127.7, 127.8, 128.0, 128.1, 128.5, 129.7, 130.0, 132.0, 132.6, 132.7, 135.3, 135.4, 137.4, 138.2, 144.8, 146.9, 155.5, 178.5.
Synthesis of 2'-0,4'-C-methylene-N 2 -isobutyrylguanosine (Compound 46) In a stream of nitrogen, sodium bis(trimethylsilyl)amide (1.0 M in THF, 0.31 ml, 0.315 mmol) 40 was added to a tetrahydrofuran solution (3.0 ml) of Compound (92.1 mg, 0.102 mmol) at room temperature, and the mixture was stirred for 3 hours at room temperature. A saturated sodium bicarbonate solution was added to the reaction mixture, and then the system was extracted 3 times with methylene chloride. The organic phase was washed with a saturated sodium chloride solution, and then dried over sodium sulfate. The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (CHCl 3 -MeOH, 25:1) to obtain a white powder, Compound 46 (31.4 mg, 0.160 mmol, 44%).
mp. 99-100 0 C. IR v max(KBr): 3162, 3068, 2932, 1683, 1610 cm' 1 H-NMR(CDCl 3 1.06 (9H, 1.25 (3H, d, J 7 Hz), 1.27 (3H, d, J 7 Hz), 2.64 (1H, 3.83, 4.01 (2H, AB, J 8 Hz), 3.97 (2H, d, J 7 Hz), 4.18 (1H, 4.51 (1H, 4.54 (2H, d, J 2 Hz), 5.77 (1H, 7.17-7.42 (5H, 7.64 7.72 (10H, 7.84 (1H, 9.03 (1H, 12.08 (1H, br s).
3 C-NMR(CDCl 3 )8c: 18.9, 19.0, 19.1, 26.5, 26.7, 36.4, 59.1, 20 72.4, 72.5, 76.8, 77.5, 86.3, 88.3, 121.7, 127.6, 127.7, 127.
8, 127.9, 128.1, 128.4, 129.6, 130.0, 132.36, 132.42, 134.8, 135.45, 135.54, 135.8, 136.8, 146.8, 147.7, 155.4, 178.6.
Synthesis of 3'-O-benzyl-2'-O,4'-C-methylene-N 2 isobutyrylguanosine (Compound 47) Tetrabutylammonium fluoride (1.0 M in THF, 0.90 ml, 0.90 mmol) was added, at room temperature, to a tetrahydrofuran solution (3.0 ml) of Compound 46 (41.3 mg, 0.060 mmol), and the mixture was stirred for 1 hour at room 41 temperature. The reaction mixture was distilled under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (AcOH-EtOH, 20:1) to obtain a white powder, Compound 47 (27.1 mg, 0.060 minol, quant.).
mp. 228 229 0 C(Et2O). [CC]D' 2 1 32.900 (c 0.875, CHC1 3 IR v max (KBr) :3162, 2934, 1683, 1608 cm- 1 'H-NMR (CDC1 3 6: 1. 24 d, J 7 Hz) 1. 26 (3H, d, J 7 Hz) 2.76 (1H, in), 3.83, 4.03 AB, J 8 Hz) 3.92, 4.02 (2H, AB, J 13 Hz), 4.33 (1H, 4.55 (1H, s) 4. 62 (2H, s), 5.80 (1H, s) 7. 25 (5H, 7. 91 (1H, s) 9.85 (1H, s) 12.05 (1H, s).
3 C-NMR (CDCl 3 8C: 1-9.19, 19.25, 36.4, 57.4, 72.5, 77.0, 77.5, 86.5, 88.8, 121.0, 127.8, 128.1, 128.2, 128.3, 128.4, 128.6, 137.1, 137.5, 147.5, 148.2, 155.7, 179.9.
(Example 61 Synthesis of oligonucleotide analogue Natural nucleosi~de amidite DUA synthesizer L11A Various oligonucleotide analogues 8IPr 2 NlrN- I CN 5'-GCGxTTTTTGCTr.3' (XTB) I IGCT..V (T2XTM) 0 Li 5'.GCGTTTX7TGCT.3' (1T3X-M) 0 256.GCG7TTlflXGCT.3' (75X) x 6'-GCGXX=lGCT-' (X.2T4) S'.GCGT'TXXTTGCT.3- (T2X2T2) s'-GCG7FFFVxYGCT-3' (T4X.) (Mi) 51-G FilrTF=rXC.3' (X2) 42 3'-O-[2-cyanoethoxy(diisopropylamino)phosphino]-5'-O- (4,4'-dimethoxytrityl)-2'-0,4'-methanouridine (Compound 21) Compound 8 (200 mg, 0.31 mmol) and diisopropylammonium tetrazolide (39.6 mg, 0.23 mmol) were subjected to azeotropy with anhydrous CH 3 CN three times, and then the system was converted into an anhydrous CH 3
CN-
anhydrous THF solution 4 ml). In a stream of nitrogen, 2-cyanoethyl N,N,N',N'-tetraisopropylphosphorodiamidite (0.12 ml, 0.37 mmol) was added, and the mixture was stirred for 90 minutes at room temperature. The solvents were distilled off under reduced pressure, and the resulting crude product was purified by silica gel column chromatography (AcOEt:hexane:Et 3 N 75:25:1). Then, the purified product was reprecipitated from AcOEt-hexane to obtain an amidite compound 21 (181 mg, 0.25 mmol, 81%).
m.p. 71-74 0 C (AcOEt-hexane).
0.
3 1 P-NMR (CDC1 3 6 149.6, 149.5, 149.4, 149.3, 149.2.
General synthesis of oligonucleotide analogues :i 20 The synthesis of an oligomer was performed by means of Pharmacia's DNA synthesizer, Gene Assembler Plus, on a 0.2 pmol scale. The concentrations of solvents, reagents, and phosphoramidite were the same as for the synthesis of natural DNA. A DMTr group of 5'-O-DMTr-thymidine (0.2 pmol) having a 3'-hydroxyl group bound to a CPG support was deprotected with trichloroacetic acid. On its group, condensation reaction was repeated using an amidite comprising four nucleic acid bases for natural DNA synthesis 43 and Compound 21 to synthesize oligonucleotide analogues of respective sequences. The synthetic cycle was as follows: Synthetic cycle (0.2 umol scale) 1) Detritylation 1% CC1 3 COOH in CH 2 ClCH 2 Cl, 6 sec 2) Coupling 0.1 M phosphoramidite (25 equiv.), M 1H-tetrazole (500 equiv.) in MeCN, 2 min 3) Capping 3% 4-(dimethylamino)pyridine, 10% Ac 2
O,
in MeCN, 18 sec 4) Oxidation 0.01 M 12 in 2,4,6-collidine/H 2 0/MeCN 6 sec The synthesized oligomer was cleaved from the support by treatment with concentrated aqueous ammonia in the customary manner. At the same time, the protective cyanoethyl group was detached from the phosphorus atom, and the protective groups for the adenine, guanine and cytosine were also removed.
The resulting oligonucleotide analogue was rid of the DMTr group by use of 20 5 ml trifluoroacetic acid on a reversed phase chromatographic column (Millipore, Oligo-PakTMSP), and further purified to obtain the desired oligonucleotide analogue.
In accordance with the foregoing method for general synthesis, the following oligonucleotide analogues were synthesized: 5'-GCGXTTTTTGCT-3' Yield 0.06 [imol (30% yield) 44 5'-GCGTTXTTTGCT-3' (T2XT3) Yield 0.05 pmol (25% yield) 5'-GCGTTTXTTGCT-3' (T3XT2) Yield 0.03 pmol (15% yield) 5'-GCGTTTTTXGCT-3' Yield 0.06 pmol (30% yield) 5'-GCGXXTTTTGCT-3' (X2T4) Yield 0.06 mol (30% yield) 5'-GCGTTXXTTGCT-3' (T2X2T2) Yield 0.05 imol (25% yield) 5'-GCGTTTTXXGCT-3' (T4X2) Yield 0.06 mol (30% yield) 5'-GCGXXXXXXGCT-3' (X6) Yield 0.06 pmol (30% yield) (10) 5'-GTTTTTTTTTXXC-3' (X2) Yield 0.07 pmol (35% yield) [Experimental Example 1] Measurement of melting temperature (Tm) 20 The melting temperatures (Tm's) of annealing products between antisense strands, which were the various oligonucleotide analogues synthesized in Example 2, and natural DNA- or RNA-based sense strands were measured to investigate the hybridizing ability of the oligonucleotide analogues of the present invention for complementary DNA and
RNA.
Each sample solution (500 with end concentrations of 100 mM NaCI, 10 mM sodium phosphate buffer (pH 4 iM 45 antisense strand, and 4 [pM sense strand, respectively, was bathed in boiling water, and slowly cooled to room temperature over the course of 10 hours. The sample solution was gradually cooled to 5 0 C, kept at 5 0 C for a further period of 20 minutes, and then started to be measured, with a stream of nitrogen being passed through a cell chamber of a spectrophotometer (UV-2100PC, Shimadzu) for prevention of moisture condensation. The sample temperature was raised at a rate of 0.2 0 C/minute until 90 0
C,
1 0 and the ultraviolet absorption at 260 nm was measured at intervals of 0.1 0 C. To prevent changes in the sample concentration with increases in the temperature, the cell was provided with a closure, and a drop of a mineral oil was applied onto the surface of the sample solution during 15 measurement.
The results are shown in the following table.
The results are shown in the following table.
*oo *o 46 Melting Temperatures (Tm's) of Antisense Oligonucleotide Analogues for Complementary DNA and RNA Tm for Tm for Antisense complementary DNA a) complementary RNA b) molecule (ATm/mod.) (ATm/mod.) -GCGTTTTTTGCT-47C5C 3' (natural)47C5C '-GCGXTTTTTGCT- 0C(3 )49C +4 3' (XT5)50C(3C49C +4) 5'-GCGTTXTTTGCT-49C(2)49C +4) 3' (T2XT3) 9C(2C49C +4 5'-GCGTTTXTTGCT- 49 0 C (+2 0 C) 50 0 C (+5 0
C)
3' (T3XT2) 52 0 C (+4 0 C) 51 0 C (+6 0
C)
3' 51 0 C (+2 0 C) 53 0 C (+4 0
C)
3' (X2T4) 5'-GCGTTXXTTGCT- 49 0 C (+1 0 C) 53 0 C (+4 0
C)
3' (T2X2T2) 54 0 C (+43 .5 0 C) 55 0 C (+5 0
C)
3'.(T4X2)
-GCGXXXXXXGCT-
3' (X6) 58-C 8 0
C)
71 0 C (+4.3 0
C)
3'-CGCAAAAAACGA-5'.
b) -r(CGCAAAAAACGA).
As shown in the table, in the case of the oligomer having one or two units of the nucleoside analogue of the present invention (general formula (Ia) introduced into a natural DNA strand, the ability to hybridize with the 47 complementary DNA oligomer, evaluated by the Tm, rose by 2 to 7 degrees (about 2 degrees per modified residue) as compared with the natural strand. With the oligomer having all T's substituted by X's the increase in the ability was as high as 11 degrees. When the ability to hybridize with complementary RNA was evaluated, the oligomer incorporating one or two X's had an increase in Tm of 4 degrees (4 to 6 degrees per modified residue) over the natural strand. In the case of X6, the ability to hybridize 10 with complementary RNA was further enhanced, showing an increase in Tm of more than 25 degrees (4 degrees per modified residue). There have been no examples of analogues undergoing such increases in Tm as compared with natural strands, and the affinity of the claimed oligomer was higher 15 for RNA than for DNA. These facts mean that the oligonucleotide analogue composed of the bicyclooligonucleoside analogue of the present invention has extremely high performance as an antisense molecule, and is useful as a material for pharmaceuticals.
[Experimental Example 2] Measurement of nuclease resistance A buffer solution (0.003 U/ml, 400 of a snake venom phosphodiesterase was mixed with a buffer solution M, 400 p1) of the oligonucleotide held at 37 0 C for minutes. The mixed solution was placed in a quartz cell (800 kept at 37 0 C, and increases in the ultraviolet absorption (260 nm) due to the decomposition of the oligonucleotide were measured over time by means of SHIMADZU 48 UV-2100PC. The buffer used comprised 0.1 M Tris-HCl (pH 0.1 M NaC1, and 14 mM MgC1 2 and was sufficiently degassed before measurement.
Measurement of half-life (tl 2 A calculation was made of the average of the values of the UV absorption measured at the start of measurement and that measured at the time when no increase in this parameter was noted. The time corresponding to this average was designated as the half-life Oligonucleotide sequence tl 2 (seconds) S 5'-GTTTTTTTTTTTC-3' (natural type) 260 5'-GTTTTTTTTT-XX-C-3' (X2) 850 Charts showing the time course of the ultraviolet absorption are presented as Fig. 1 (natural strand) and Fig.
2 The ultraviolet absorption reached a plateau in about 30 minutes for the natural strand, and about 20 minutes for X2, after initiation of the enzyme reaction.
INDUSTRIAL APPLICABILITY The use of this analogue provides an oligonucleotide analogue antisense molecule, which is minimally hydrolyzable with an enzyme in vivo, has a high sense strand binding ability, and is easily synthesized.
49 Sequence Listing Name of the applicant: Takeshi Imanishi Title of the invention: Novel bicyclonucleoside and oligonucleotide analogue Reference No.: Application No.: Date of application: March 1998 Priority No.: JPA 53409/97 Priority date: March 7, 1997 10 Number of sequences: 11 S* Seq. ID No.: 1 Length of sequence: 12 Type of sequence: Nucleotide Number of strands: Single stranded Topology: Linear Sequence: 5'-GCGTTTTTTGCT-3' Seq. ID No.: 2 20 Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue Number of strands: Single stranded Topology: Linear Sequence: 5'-GCGXTTTTTGCT-3' Seq. ID No.: 3 Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue 50 Number of strands: Single stranded Topology: Linear Sequence: 5'-GCGTTXTTTGCT-3' Seq. ID No.: 4 Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue Number of strands: Single stranded Topology: Linear 0 Sequence: 5'-GCGTTTXTTGCT-3' :i Seq. ID No.: Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue 'o 15 Number of strands: Single stranded Topology: Linear Sequence: 5'-GCGTTTTTXGCT-3' Seq. ID No.: 6 20 Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue Number of strands: Single stranded Topology: Linear Sequence: 5'-GCGXXTTTTGCT-3' Seq. ID No.: 7 Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue 51 Number of strands: Single stranded Topology: Linear Sequence: 5'-GCGTTXXTTGCT-3' Seq. ID No.: 8 Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue Number of strands: Single stranded Topology: Linear 0 Sequence: 5'-GCGTTTTXXGCT-3' o* Seq. ID No.: 9 Length of sequence: 12 Type of sequence: Nucleotide, nucleotide analogue Number of strands: Single stranded Topology: Linear Sequence: 5'-GCGXXXXXXGCT-3' Seq. ID No.: 20 Length of sequence: 13 Type of sequence: Nucleotide, nucleotide analogue Number of strands: Single stranded Topology: Linear Sequence: 5'-GTTTTTTTTTTTC-3' Seq. ID No.: 11 Length of sequence: 13 Type of sequence: Nucleotide, nucleotide analogue 52 Number* of strands: Single stranded Topology: Linear Sequence: 5' -GTTTTTTTTXXTC-3' 53
Claims (6)
1. A method of treatment of a medical condition comprising administering a therapeutically effective amount of an oligonucleotide or polynucleotide analogue having one or more structures of the general formula (la) O 0 B (1a) 0 where B is a pyrimidine or purine nucleic acid base, or an analogue thereof.
2. A method according to claim 1 wherein said condition would benefit from 10 administration of an antineoplastic or antiviral agent. infection
4. A method according to claim 1 or 2 wherein said condition is cancer. S' 5. A method according to claim 1 or 2 wherein said condition is influenza.
6. A method of treatment of a medical condition comprising administration of S 20 a therapeutically effective amount of an oligonucleotide or polynucleotide analogue of the general formula (II) 1 O-1 0 R O-P O- O-P O W:\iona\Specics\Div of 720472.doc where B 1 and B are identical or different, and each represent a pyrimidine or purine nucleic acid base, or an analogue thereof, R is a hydrogen atom, a hydroxyl group, a halogen atom, or an alkoxy group, W' and W 2 are identical or different, and each represent a hydrogen atom, an alkyl group, an alkenyl group, an alkinyl group, a cycloalkyl group, an aralkyl group, an aryl group, an acyl group, a silyl group, a phosphoric acid residue, a naturally occurring nucleoside or a synthetic nucleoside bound via a phosphodiester bond, or an oligonucleotide or polynucleotide containing the nucleoside, n"'s or n 2 's are identical or different, and each denote an integer of 0 to 50, provided that n's or n 2 's are not zero at the same time, and that not all of n 2 's are zero at the same time, n 3 denotes an integer of 1 to 50, provided that n 1 and/or n 2 are or is 2 or more, B 1 and B need not be identical, and R's need not be identical. 15 7. A method according to claim 6 wherein said condition would benefit from administration of an antineoplastic or antiviral agent. S
8. A method according to claim 6 or 7 wherein said condition is a viral infection
9. A method according to claim 6 or 7 wherein said condition is cancer. A method according to claim 6 or 7 wherein said condition is influenza. DATED: 11 August, 2000 PHILLIPS ORMONDE FITZPATRICK Attorneys for: TAKESHI IMANISHI W:\fona\Specics\Div of 720472.doc
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