AU2022259667A1 - Efficient voxelization for deep learning - Google Patents

Efficient voxelization for deep learning Download PDF

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Publication number
AU2022259667A1
AU2022259667A1 AU2022259667A AU2022259667A AU2022259667A1 AU 2022259667 A1 AU2022259667 A1 AU 2022259667A1 AU 2022259667 A AU2022259667 A AU 2022259667A AU 2022259667 A AU2022259667 A AU 2022259667A AU 2022259667 A1 AU2022259667 A1 AU 2022259667A1
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amino acid
voxel
computer
atoms
atom
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AU2022259667A
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Kai-How FARH
Hong Gao
Tobias HAMP
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Illumina Cambridge Ltd
Illumina Inc
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Illumina Cambridge Ltd
Illumina Inc
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Priority claimed from US17/703,958 external-priority patent/US20220336057A1/en
Application filed by Illumina Cambridge Ltd, Illumina Inc filed Critical Illumina Cambridge Ltd
Publication of AU2022259667A1 publication Critical patent/AU2022259667A1/en
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    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00Computing arrangements based on biological models
    • G06N3/02Neural networks
    • G06N3/04Architecture, e.g. interconnection topology
    • G06N3/045Combinations of networks
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20Supervised data analysis
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00Computing arrangements based on biological models
    • G06N3/02Neural networks
    • G06N3/04Architecture, e.g. interconnection topology
    • G06N3/044Recurrent networks, e.g. Hopfield networks
    • GPHYSICS
    • G06COMPUTING; CALCULATING OR COUNTING
    • G06NCOMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00Computing arrangements based on biological models
    • G06N3/02Neural networks
    • G06N3/08Learning methods
    • G06N3/084Backpropagation, e.g. using gradient descent

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  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Data Mining & Analysis (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medical Informatics (AREA)
  • Molecular Biology (AREA)
  • Evolutionary Computation (AREA)
  • Artificial Intelligence (AREA)
  • Software Systems (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • General Physics & Mathematics (AREA)
  • Mathematical Physics (AREA)
  • Biomedical Technology (AREA)
  • Computational Linguistics (AREA)
  • Computing Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Epidemiology (AREA)
  • Public Health (AREA)
  • Databases & Information Systems (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Genetics & Genomics (AREA)
  • Bioethics (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Image Generation (AREA)
  • Image Processing (AREA)
  • Magnetic Resonance Imaging Apparatus (AREA)
AU2022259667A 2021-04-15 2022-04-14 Efficient voxelization for deep learning Pending AU2022259667A1 (en)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US202163175495P 2021-04-15 2021-04-15
US63/175,495 2021-04-15
US202163175767P 2021-04-16 2021-04-16
US63/175,767 2021-04-16
US17/703,958 US20220336057A1 (en) 2021-04-15 2022-03-24 Efficient voxelization for deep learning
US17/703,958 2022-03-24
US17/703,935 2022-03-24
US17/703,935 US20220336056A1 (en) 2021-04-15 2022-03-24 Multi-channel protein voxelization to predict variant pathogenicity using deep convolutional neural networks
PCT/US2022/024918 WO2022221593A1 (fr) 2021-04-15 2022-04-14 Voxélisation efficace pour apprentissage en profondeur

Publications (1)

Publication Number Publication Date
AU2022259667A1 true AU2022259667A1 (en) 2023-10-26

Family

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Family Applications (2)

Application Number Title Priority Date Filing Date
AU2022259667A Pending AU2022259667A1 (en) 2021-04-15 2022-04-14 Efficient voxelization for deep learning
AU2022258691A Pending AU2022258691A1 (en) 2021-04-15 2022-04-14 Multi-channel protein voxelization to predict variant pathogenicity using deep convolutional neural networks

Family Applications After (1)

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AU2022258691A Pending AU2022258691A1 (en) 2021-04-15 2022-04-14 Multi-channel protein voxelization to predict variant pathogenicity using deep convolutional neural networks

Country Status (8)

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EP (2) EP4323991A1 (fr)
JP (2) JP2024513995A (fr)
KR (2) KR20230170680A (fr)
AU (2) AU2022259667A1 (fr)
BR (2) BR112023021343A2 (fr)
CA (2) CA3215520A1 (fr)
IL (2) IL307667A (fr)
WO (2) WO2022221591A1 (fr)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116153404B (zh) * 2023-02-28 2023-08-15 成都信息工程大学 一种单细胞ATAC-seq数据分析方法

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10423861B2 (en) * 2017-10-16 2019-09-24 Illumina, Inc. Deep learning-based techniques for training deep convolutional neural networks
WO2019084559A1 (fr) * 2017-10-27 2019-05-02 Apostle, Inc. Prédiction d'impact pathogène lié au cancer de mutations somatiques à l'aide de procédés basés sur un apprentissage profond
CN110245685B (zh) * 2019-05-15 2022-03-25 清华大学 基因组单位点变异致病性的预测方法、系统及存储介质

Also Published As

Publication number Publication date
AU2022258691A1 (en) 2023-10-26
JP2024513995A (ja) 2024-03-27
KR20230170680A (ko) 2023-12-19
EP4323989A1 (fr) 2024-02-21
BR112023021343A2 (pt) 2023-12-19
EP4323991A1 (fr) 2024-02-21
CA3215520A1 (fr) 2022-10-20
JP2024514894A (ja) 2024-04-03
IL307661A (en) 2023-12-01
KR20230170679A (ko) 2023-12-19
CA3215514A1 (fr) 2022-10-20
IL307667A (en) 2023-12-01
BR112023021266A2 (pt) 2023-12-12
WO2022221593A1 (fr) 2022-10-20
WO2022221591A1 (fr) 2022-10-20

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