AU2020239263B2 - Methods, devices, and systems for analyte detection and analysis - Google Patents

Methods, devices, and systems for analyte detection and analysis Download PDF

Info

Publication number
AU2020239263B2
AU2020239263B2 AU2020239263A AU2020239263A AU2020239263B2 AU 2020239263 B2 AU2020239263 B2 AU 2020239263B2 AU 2020239263 A AU2020239263 A AU 2020239263A AU 2020239263 A AU2020239263 A AU 2020239263A AU 2020239263 B2 AU2020239263 B2 AU 2020239263B2
Authority
AU
Australia
Prior art keywords
nucleic acid
substrate
acid molecules
scanning
objective
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
AU2020239263A
Other languages
English (en)
Other versions
AU2020239263A1 (en
Inventor
Gilad Almogy
Joseph Anthony
Kristopher BARBEE
Nathan Beckett
Nathan Caswell
Stephanie KUBECKA
Phillip You Fai Lee
Steven Menchen
Gene POLOVY
Mark Pratt
Denis PRISTINSKI
Osip Schwartz
Jose Martin SOSA
Jacob A. Wolf
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ultima Genomics Inc
Original Assignee
Ultima Genomics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US16/445,798 external-priority patent/US10900078B2/en
Priority claimed from US16/677,067 external-priority patent/US10830703B1/en
Priority claimed from US16/677,115 external-priority patent/US10852518B1/en
Application filed by Ultima Genomics Inc filed Critical Ultima Genomics Inc
Publication of AU2020239263A1 publication Critical patent/AU2020239263A1/en
Application granted granted Critical
Publication of AU2020239263B2 publication Critical patent/AU2020239263B2/en
Priority to AU2024205158A priority Critical patent/AU2024205158B2/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • GPHYSICS
    • G02OPTICS
    • G02BOPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00Microscopes
    • G02B21/0004Microscopes specially adapted for specific applications
    • G02B21/002Scanning microscopes
    • G02B21/0024Confocal scanning microscopes (CSOMs) or confocal "macroscopes"; Accessories which are not restricted to use with CSOMs, e.g. sample holders
    • G02B21/0036Scanning details, e.g. scanning stages
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64Fluorescence; Phosphorescence
    • G01N21/645Specially adapted constructive features of fluorimeters
    • G01N21/6452Individual samples arranged in a regular 2D-array, e.g. multiwell plates
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J4/00Feed or outlet devices; Feed or outlet control devices
    • B01J4/001Feed or outlet devices as such, e.g. feeding tubes
    • B01J4/007Feed or outlet devices as such, e.g. feeding tubes provided with moving parts
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L3/00Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
    • B01L3/02Burettes; Pipettes
    • B01L3/0289Apparatus for withdrawing or distributing predetermined quantities of fluid
    • B01L3/0293Apparatus for withdrawing or distributing predetermined quantities of fluid for liquids
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L3/00Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
    • B01L3/50Containers for the purpose of retaining a material to be analysed, e.g. test tubes
    • B01L3/502Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
    • B01L3/5025Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures for parallel transport of multiple samples
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64Fluorescence; Phosphorescence
    • G01N21/645Specially adapted constructive features of fluorimeters
    • G01N21/6456Spatial resolved fluorescence measurements; Imaging
    • GPHYSICS
    • G02OPTICS
    • G02BOPTICAL ELEMENTS, SYSTEMS OR APPARATUS
    • G02B21/00Microscopes
    • G02B21/24Base structure
    • G02B21/26Stages; Adjusting means therefor
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2200/00Solutions for specific problems relating to chemical or physical laboratory apparatus
    • B01L2200/06Fluid handling related problems
    • B01L2200/0647Handling flowable solids, e.g. microscopic beads, cells, particles
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2200/00Solutions for specific problems relating to chemical or physical laboratory apparatus
    • B01L2200/16Reagents, handling or storing thereof
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00Additional constructional details
    • B01L2300/08Geometry, shape and general structure
    • B01L2300/0803Disc shape
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2400/00Moving or stopping fluids
    • B01L2400/04Moving fluids with specific forces or mechanical means
    • B01L2400/0403Moving fluids with specific forces or mechanical means specific forces
    • B01L2400/0409Moving fluids with specific forces or mechanical means specific forces centrifugal forces
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L7/00Heating or cooling apparatus; Heat insulating devices
    • B01L7/52Heating or cooling apparatus; Heat insulating devices with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/17Systems in which incident light is modified in accordance with the properties of the material investigated
    • G01N21/25Colour; Spectral properties, i.e. comparison of effect of material on the light at two or more different wavelengths or wavelength bands
    • G01N21/251Colorimeters; Construction thereof
    • G01N21/253Colorimeters; Construction thereof for batch operation, i.e. multisample apparatus
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2201/00Features of devices classified in G01N21/00
    • G01N2201/10Scanning
    • G01N2201/104Mechano-optical scan, i.e. object and beam moving

Landscapes

  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biochemistry (AREA)
  • Organic Chemistry (AREA)
  • Immunology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Clinical Laboratory Science (AREA)
  • Pathology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Engineering & Computer Science (AREA)
  • Optics & Photonics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Genetics & Genomics (AREA)
  • Hematology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Materials By Optical Means (AREA)
  • Microscoopes, Condenser (AREA)
  • Spectroscopy & Molecular Physics (AREA)
AU2020239263A 2019-03-14 2020-03-13 Methods, devices, and systems for analyte detection and analysis Active AU2020239263B2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2024205158A AU2024205158B2 (en) 2019-03-14 2024-07-29 Methods, devices, and systems for analyte detection and analysis

Applications Claiming Priority (13)

Application Number Priority Date Filing Date Title
US201962818549P 2019-03-14 2019-03-14
US62/818,549 2019-03-14
US201962837684P 2019-04-23 2019-04-23
US62/837,684 2019-04-23
US16/445,798 2019-06-19
US16/445,798 US10900078B2 (en) 2019-03-14 2019-06-19 Methods, devices, and systems for analyte detection and analysis
US201962914293P 2019-10-11 2019-10-11
US62/914,293 2019-10-11
US16/677,067 US10830703B1 (en) 2019-03-14 2019-11-07 Methods, devices, and systems for analyte detection and analysis
US16/677,115 US10852518B1 (en) 2019-03-14 2019-11-07 Methods, devices, and systems for analyte detection and analysis
US16/677,115 2019-11-07
US16/677,067 2019-11-07
PCT/US2020/022816 WO2020186243A1 (en) 2019-03-14 2020-03-13 Methods, devices, and systems for analyte detection and analysis

Related Child Applications (1)

Application Number Title Priority Date Filing Date
AU2024205158A Division AU2024205158B2 (en) 2019-03-14 2024-07-29 Methods, devices, and systems for analyte detection and analysis

Publications (2)

Publication Number Publication Date
AU2020239263A1 AU2020239263A1 (en) 2021-10-07
AU2020239263B2 true AU2020239263B2 (en) 2024-05-02

Family

ID=72426853

Family Applications (2)

Application Number Title Priority Date Filing Date
AU2020239263A Active AU2020239263B2 (en) 2019-03-14 2020-03-13 Methods, devices, and systems for analyte detection and analysis
AU2024205158A Active AU2024205158B2 (en) 2019-03-14 2024-07-29 Methods, devices, and systems for analyte detection and analysis

Family Applications After (1)

Application Number Title Priority Date Filing Date
AU2024205158A Active AU2024205158B2 (en) 2019-03-14 2024-07-29 Methods, devices, and systems for analyte detection and analysis

Country Status (9)

Country Link
EP (1) EP3938832A4 (zh)
JP (1) JP7530909B2 (zh)
KR (1) KR20210150402A (zh)
CN (1) CN113841078B (zh)
AU (2) AU2020239263B2 (zh)
CA (2) CA3238741A1 (zh)
MX (1) MX2021010896A (zh)
SG (1) SG11202109764VA (zh)
WO (1) WO2020186243A1 (zh)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10344328B2 (en) 2017-11-17 2019-07-09 Ultima Genomics, Inc. Methods for biological sample processing and analysis
US11499962B2 (en) 2017-11-17 2022-11-15 Ultima Genomics, Inc. Methods and systems for analyte detection and analysis
US10512911B1 (en) 2018-12-07 2019-12-24 Ultima Genomics, Inc. Implementing barriers for controlled environments during sample processing and detection
US11118223B2 (en) 2019-03-14 2021-09-14 Ultima Genomics, Inc. Methods, devices, and systems for analyte detection and analysis
US10900078B2 (en) 2019-03-14 2021-01-26 Ultima Genomics, Inc. Methods, devices, and systems for analyte detection and analysis
US20220403466A1 (en) * 2021-06-17 2022-12-22 Mgi Tech Co., Ltd. Sequencing systems and methods utilizing curved imaging paths on rotating substrates
KR20230091463A (ko) * 2021-12-16 2023-06-23 (주)레보스케치 회전형 다채널 형광스캐너
CN115041157B (zh) * 2022-06-10 2023-08-08 佛山科学技术学院 一种制氢催化剂载体及其制备方法
KR102704324B1 (ko) * 2022-11-16 2024-09-09 한국수자원공사 소형생물 모니터링 장치 및 이의 모니터링 방법
WO2024130655A1 (zh) * 2022-12-22 2024-06-27 深圳华大生命科学研究院 试剂传输方法及用于基因测序的表面液路系统
CN116930481A (zh) * 2023-09-12 2023-10-24 重庆医科大学绍兴柯桥医学检验技术研究中心 一种磁场驱动微纳米马达的跨分子检测方法

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20160076978A1 (en) * 2013-03-15 2016-03-17 Massachusetts Institute Of Technology Deposition and imaging of particles on planar substrates

Family Cites Families (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4962020A (en) 1988-07-12 1990-10-09 President And Fellows Of Harvard College DNA sequencing
US5641658A (en) 1994-08-03 1997-06-24 Mosaic Technologies, Inc. Method for performing amplification of nucleic acid with two primers bound to a single solid support
US5800997A (en) * 1996-11-01 1998-09-01 Novartis Finance Corporation Detection of maize fungal pathogens using the polymerase chain reaction
US6320609B1 (en) * 1998-07-10 2001-11-20 Nanometrics Incorporated System using a polar coordinate stage and continuous image rotation to compensate for stage rotation
US20020055112A1 (en) * 2000-08-26 2002-05-09 Nila Patil Methods for reducing complexity of nucleic acid samples
EP1345026B1 (en) * 2002-03-15 2010-05-05 Affymetrix, Inc. System and method for scanning of biological materials
US20030224506A1 (en) 2002-05-30 2003-12-04 Biomicroarrays Inc Tiled biochips and the methods of making the same
US9976192B2 (en) * 2006-03-10 2018-05-22 Ldip, Llc Waveguide-based detection system with scanning light source
US8927465B2 (en) 2006-08-03 2015-01-06 National University University of Singapore Microarray system and a process for producing microarrays
CN101893523A (zh) * 2009-05-20 2010-11-24 纳米基因有限公司 分析物检测的方法和组合物
KR101567195B1 (ko) * 2013-03-14 2015-11-06 가부시키가이샤 스크린 홀딩스 토출 검사 장치 및 기판 처리 장치
US10512911B1 (en) 2018-12-07 2019-12-24 Ultima Genomics, Inc. Implementing barriers for controlled environments during sample processing and detection

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20160076978A1 (en) * 2013-03-15 2016-03-17 Massachusetts Institute Of Technology Deposition and imaging of particles on planar substrates

Also Published As

Publication number Publication date
SG11202109764VA (en) 2021-10-28
MX2021010896A (es) 2023-03-16
JP7530909B2 (ja) 2024-08-08
AU2020239263A1 (en) 2021-10-07
CA3129726A1 (en) 2020-09-17
CN113841078B (zh) 2024-10-01
WO2020186243A1 (en) 2020-09-17
KR20210150402A (ko) 2021-12-10
EP3938832A4 (en) 2023-03-22
JP2022526715A (ja) 2022-05-26
AU2024205158B2 (en) 2024-08-22
AU2024205158A1 (en) 2024-08-15
EP3938832A1 (en) 2022-01-19
CA3238741A1 (en) 2020-09-17
CN113841078A (zh) 2021-12-24

Similar Documents

Publication Publication Date Title
AU2020239263B2 (en) Methods, devices, and systems for analyte detection and analysis
US10830703B1 (en) Methods, devices, and systems for analyte detection and analysis
US11591651B2 (en) Methods for biological sample processing and analysis
US11268143B2 (en) Methods, devices, and systems for analyte detection and analysis
US10852518B1 (en) Methods, devices, and systems for analyte detection and analysis
US20210199647A1 (en) Methods, devices, and systems for analyte detection and analysis
US11155868B2 (en) Methods, devices, and systems for analyte detection and analysis
US11499962B2 (en) Methods and systems for analyte detection and analysis
US20240360505A1 (en) Methods, devices, and systems for analyte detection and analysis

Legal Events

Date Code Title Description
FGA Letters patent sealed or granted (standard patent)