AU2001255635A1 - Methods and computer software products for transcriptional annotation - Google Patents

Methods and computer software products for transcriptional annotation

Info

Publication number
AU2001255635A1
AU2001255635A1 AU2001255635A AU5563501A AU2001255635A1 AU 2001255635 A1 AU2001255635 A1 AU 2001255635A1 AU 2001255635 A AU2001255635 A AU 2001255635A AU 5563501 A AU5563501 A AU 5563501A AU 2001255635 A1 AU2001255635 A1 AU 2001255635A1
Authority
AU
Australia
Prior art keywords
methods
computer software
software products
annotation
transcriptional
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001255635A
Inventor
Thomas Gingeras
Carsten Rosenow
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Affymetrix Inc
Original Assignee
Affymetrix Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Affymetrix Inc filed Critical Affymetrix Inc
Publication of AU2001255635A1 publication Critical patent/AU2001255635A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Chemical & Material Sciences (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Biophysics (AREA)
  • Medical Informatics (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AU2001255635A 2000-05-19 2001-04-24 Methods and computer software products for transcriptional annotation Abandoned AU2001255635A1 (en)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US20543200P 2000-05-19 2000-05-19
US60205432 2000-05-19
US20686600P 2000-05-24 2000-05-24
US60206866 2000-05-24
US64108100A 2000-08-16 2000-08-16
US09641081 2000-08-16
PCT/US2001/013215 WO2001090746A1 (en) 2000-05-19 2001-04-24 Methods and computer software products for transcriptional annotation

Publications (1)

Publication Number Publication Date
AU2001255635A1 true AU2001255635A1 (en) 2001-12-03

Family

ID=27394789

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001255635A Abandoned AU2001255635A1 (en) 2000-05-19 2001-04-24 Methods and computer software products for transcriptional annotation

Country Status (5)

Country Link
EP (1) EP1272841A4 (en)
JP (1) JP2003534551A (en)
AU (1) AU2001255635A1 (en)
CA (1) CA2378854A1 (en)
WO (1) WO2001090746A1 (en)

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6040138A (en) * 1995-09-15 2000-03-21 Affymetrix, Inc. Expression monitoring by hybridization to high density oligonucleotide arrays
US6045996A (en) * 1993-10-26 2000-04-04 Affymetrix, Inc. Hybridization assays on oligonucleotide arrays
WO1999067422A1 (en) * 1998-06-24 1999-12-29 Smithkline Beecham Corporation Method for detecting, analyzing, and mapping rna transcripts

Also Published As

Publication number Publication date
EP1272841A1 (en) 2003-01-08
WO2001090746A1 (en) 2001-11-29
CA2378854A1 (en) 2001-11-29
EP1272841A4 (en) 2006-07-26
JP2003534551A (en) 2003-11-18

Similar Documents

Publication Publication Date Title
AU2001261078A1 (en) Methods and systems for securing computer software
AU2001274882A1 (en) Rotatable computer display apparatus and method
AU2001253847A1 (en) Methods and apparatus for securing access to a computer
AU2001241000A1 (en) System and method for computer searching
AU4357000A (en) System and method for testing computer software
EP1407349A4 (en) Method and system for computer software application execution
AU2001257399A1 (en) Method and apparatus for three dimensional internet and computer file interface
AU2001277174A1 (en) High-efficiency computer thermal management apparatus and method
AU2002217843A1 (en) Computer method and apparatus for classifying objects
AU6364400A (en) Method and system for computer aided embroidery
AU2002337423A1 (en) Method for defining and optimizing criteria used to detect a contextualy specific concept within a paragraph
AU2001284855A1 (en) Computer system and method of operating a computer system
AU2002363522A1 (en) System and method for improved computer drug design
AU3181800A (en) Computer input device
AU2001270013A1 (en) Computer method and device for transporting data
AU2002223171A1 (en) Method and computer device with different criticality
AU2001255635A1 (en) Methods and computer software products for transcriptional annotation
AU2002241501A1 (en) Methods and computer software products for selecting nucleic acid probes
AU6595700A (en) Method and apparatus for operating virtual computer
AU2002309902A1 (en) Modular computer system and method
AU2002212323A1 (en) Computer mouse
AU2001261292A1 (en) Methods and apparatus for facilitating the sharing of computer graphics operations
AU2001219053A1 (en) Computer apparatus
AU4533699A (en) Computer peripheral user interface system and method for guiding the use thereof
AU2001296039A1 (en) Computer