ATE544872T1 - Verwendung einer strukturellen variation zur analyse genomischer unterschiede für heteroseprognose - Google Patents
Verwendung einer strukturellen variation zur analyse genomischer unterschiede für heteroseprognoseInfo
- Publication number
- ATE544872T1 ATE544872T1 AT08867704T AT08867704T ATE544872T1 AT E544872 T1 ATE544872 T1 AT E544872T1 AT 08867704 T AT08867704 T AT 08867704T AT 08867704 T AT08867704 T AT 08867704T AT E544872 T1 ATE544872 T1 AT E544872T1
- Authority
- AT
- Austria
- Prior art keywords
- prediction
- heterose
- structural variation
- degree
- arrays
- Prior art date
Links
- 238000003491 array Methods 0.000 abstract 3
- 238000000034 method Methods 0.000 abstract 3
- 238000004458 analytical method Methods 0.000 abstract 1
- 230000002860 competitive effect Effects 0.000 abstract 1
- 238000009396 hybridization Methods 0.000 abstract 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/10—Ploidy or copy number detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/13—Plant traits
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Physics & Mathematics (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Biochemistry (AREA)
- Botany (AREA)
- Mycology (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Medical Informatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Chemical Kinetics & Catalysis (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US1722707P | 2007-12-28 | 2007-12-28 | |
| PCT/US2008/088407 WO2009086500A1 (en) | 2007-12-28 | 2008-12-29 | Using structural variation to analyze genomic differences for the prediction of heterosis |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE544872T1 true ATE544872T1 (de) | 2012-02-15 |
Family
ID=40473489
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT08867704T ATE544872T1 (de) | 2007-12-28 | 2008-12-29 | Verwendung einer strukturellen variation zur analyse genomischer unterschiede für heteroseprognose |
Country Status (6)
| Country | Link |
|---|---|
| US (3) | US8996318B2 (de) |
| EP (1) | EP2229458B1 (de) |
| AT (1) | ATE544872T1 (de) |
| CA (1) | CA2724160C (de) |
| ES (1) | ES2381457T3 (de) |
| WO (1) | WO2009086500A1 (de) |
Families Citing this family (18)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US10522240B2 (en) * | 2006-05-03 | 2019-12-31 | Population Bio, Inc. | Evaluating genetic disorders |
| US7702468B2 (en) | 2006-05-03 | 2010-04-20 | Population Diagnostics, Inc. | Evaluating genetic disorders |
| WO2010029548A1 (en) * | 2008-09-11 | 2010-03-18 | Yissum Research Development Company Of The Hebrew University Of Jerusalem, Ltd. | Method for identifying genetic loci invovled in hybrid vigor |
| BRPI0920872B1 (pt) | 2008-10-06 | 2018-06-19 | Yissum Research Development Company Of The Hebrew University Of Jerusalem Ltd. | Polinucleotídeo isolado que codifica uma proteína de sft mutante e método para produzir uma planta híbrida |
| WO2012018387A2 (en) | 2010-08-02 | 2012-02-09 | Population Diagnotics, Inc. | Compositions and methods for discovery of causative mutations in genetic disorders |
| EP2773779B1 (de) | 2011-11-04 | 2020-10-14 | Population Bio, Inc. | Verfahren und zusammensetzungen zur diagnose, prognose und behandlung neurologischer erkrankungen |
| CN102542180A (zh) * | 2012-01-24 | 2012-07-04 | 中国农业科学院棉花研究所 | 检测与评价农作物ssr分子标记冗余性的方法 |
| DK2812452T3 (da) | 2012-02-09 | 2020-06-29 | Population Bio Inc | Fremgangsmåder og sammensætninger til screening og behandling af udviklingsforstyrrelser |
| EP2895621B1 (de) | 2012-09-14 | 2020-10-21 | Population Bio, Inc. | Verfahren und zusammensetzungen zur diagnose, prognose und behandlung neurologischer erkrankungen |
| US10233495B2 (en) | 2012-09-27 | 2019-03-19 | The Hospital For Sick Children | Methods and compositions for screening and treating developmental disorders |
| US10957421B2 (en) | 2014-12-03 | 2021-03-23 | Syracuse University | System and method for inter-species DNA mixture interpretation |
| US10395759B2 (en) | 2015-05-18 | 2019-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for copy number variant detection |
| US12071669B2 (en) | 2016-02-12 | 2024-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for detection of abnormal karyotypes |
| US10240205B2 (en) | 2017-02-03 | 2019-03-26 | Population Bio, Inc. | Methods for assessing risk of developing a viral disease using a genetic test |
| EP4177356B1 (de) | 2018-08-08 | 2024-05-08 | PML Screening, LLC | Verfahren zur beurteilung des risikos der entwicklung einer viruserkrankung unter verwendung eines genetischen tests |
| CN109829879B (zh) * | 2018-12-04 | 2021-01-15 | 国际竹藤中心 | 维管束的检测方法及装置 |
| CN113936737B (zh) * | 2021-10-14 | 2023-05-23 | 温州医科大学附属眼视光医院 | 一种基于rna基序向量比较rna结构的方法、家族聚类方法、评估变构效应的方法、功能注释的方法、系统和设备 |
| CN114480701B (zh) * | 2021-12-29 | 2022-12-16 | 河南省农业科学院粮食作物研究所 | 一种用于预测亲本配合力和杂交种表型的玉米全基因组液相育种芯片 |
Family Cites Families (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5492547B1 (en) * | 1993-09-14 | 1998-06-30 | Dekalb Genetics Corp | Process for predicting the phenotypic trait of yield in maize |
| AU2621300A (en) | 1999-01-21 | 2000-08-07 | Pioneer Hi-Bred International, Inc. | Molecular profiling for heterosis selection |
| WO2001007664A2 (en) | 1999-07-27 | 2001-02-01 | Iowa State University Research Foundation, Inc. | Genome analysis |
| WO2003050748A2 (en) | 2001-12-11 | 2003-06-19 | Lynx Therapeutics, Inc. | Genetic analysis of gene expression in heterosis |
| CN1997754A (zh) | 2004-02-03 | 2007-07-11 | 混合生物科学有限公司 | 鉴定促进杂种优势和杂种无活力的基因的方法及其用途 |
| US20070134678A1 (en) * | 2005-12-12 | 2007-06-14 | Rees Dianne M | Comparative genome hybridization of organelle genomes |
| GB2436564A (en) | 2006-03-31 | 2007-10-03 | Plant Bioscience Ltd | Prediction of heterosis and other traits by transcriptome analysis |
| US20080083042A1 (en) * | 2006-08-14 | 2008-04-03 | David Butruille | Maize polymorphisms and methods of genotyping |
-
2008
- 2008-12-29 AT AT08867704T patent/ATE544872T1/de active
- 2008-12-29 US US12/344,887 patent/US8996318B2/en active Active
- 2008-12-29 CA CA2724160A patent/CA2724160C/en active Active
- 2008-12-29 EP EP08867704A patent/EP2229458B1/de active Active
- 2008-12-29 WO PCT/US2008/088407 patent/WO2009086500A1/en not_active Ceased
- 2008-12-29 ES ES08867704T patent/ES2381457T3/es active Active
-
2015
- 2015-03-20 US US14/664,590 patent/US20150197821A1/en not_active Abandoned
-
2018
- 2018-01-22 US US15/876,797 patent/US11053554B2/en active Active
Also Published As
| Publication number | Publication date |
|---|---|
| US20150197821A1 (en) | 2015-07-16 |
| CA2724160C (en) | 2017-05-02 |
| WO2009086500A1 (en) | 2009-07-09 |
| EP2229458B1 (de) | 2012-02-08 |
| US20090170712A1 (en) | 2009-07-02 |
| ES2381457T3 (es) | 2012-05-28 |
| US20180142309A1 (en) | 2018-05-24 |
| CA2724160A1 (en) | 2009-07-09 |
| US8996318B2 (en) | 2015-03-31 |
| EP2229458A1 (de) | 2010-09-22 |
| US11053554B2 (en) | 2021-07-06 |
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