ATE544872T1 - Verwendung einer strukturellen variation zur analyse genomischer unterschiede für heteroseprognose - Google Patents

Verwendung einer strukturellen variation zur analyse genomischer unterschiede für heteroseprognose

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Publication number
ATE544872T1
ATE544872T1 AT08867704T AT08867704T ATE544872T1 AT E544872 T1 ATE544872 T1 AT E544872T1 AT 08867704 T AT08867704 T AT 08867704T AT 08867704 T AT08867704 T AT 08867704T AT E544872 T1 ATE544872 T1 AT E544872T1
Authority
AT
Austria
Prior art keywords
prediction
heterose
structural variation
degree
arrays
Prior art date
Application number
AT08867704T
Other languages
English (en)
Inventor
Mary Beatty
James A Janni
Jonathan E Lightner
Antoni J Rafalski
Original Assignee
Pioneer Hi Bred Int
Du Pont
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Pioneer Hi Bred Int, Du Pont filed Critical Pioneer Hi Bred Int
Application granted granted Critical
Publication of ATE544872T1 publication Critical patent/ATE544872T1/de

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/10—Ploidy or copy number detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/13—Plant traits
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/16—Primer sets for multiplex assays
AT08867704T 2007-12-28 2008-12-29 Verwendung einer strukturellen variation zur analyse genomischer unterschiede für heteroseprognose ATE544872T1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US1722707P 2007-12-28 2007-12-28
PCT/US2008/088407 WO2009086500A1 (en) 2007-12-28 2008-12-29 Using structural variation to analyze genomic differences for the prediction of heterosis

Publications (1)

Publication Number Publication Date
ATE544872T1 true ATE544872T1 (de) 2012-02-15

Family

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Family Applications (1)

Application Number Title Priority Date Filing Date
AT08867704T ATE544872T1 (de) 2007-12-28 2008-12-29 Verwendung einer strukturellen variation zur analyse genomischer unterschiede für heteroseprognose

Country Status (6)

Country Link
US (3) US8996318B2 (de)
EP (1) EP2229458B1 (de)
AT (1) ATE544872T1 (de)
CA (1) CA2724160C (de)
ES (1) ES2381457T3 (de)
WO (1) WO2009086500A1 (de)

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US10522240B2 (en) * 2006-05-03 2019-12-31 Population Bio, Inc. Evaluating genetic disorders
US7702468B2 (en) 2006-05-03 2010-04-20 Population Diagnostics, Inc. Evaluating genetic disorders
WO2010029548A1 (en) * 2008-09-11 2010-03-18 Yissum Research Development Company Of The Hebrew University Of Jerusalem, Ltd. Method for identifying genetic loci invovled in hybrid vigor
CN102202492B (zh) 2008-10-06 2014-02-12 耶路撒冷希伯来大学伊森姆研究发展有限公司 诱导的杂种优势相关的突变
WO2012018387A2 (en) 2010-08-02 2012-02-09 Population Diagnotics, Inc. Compositions and methods for discovery of causative mutations in genetic disorders
WO2013067451A2 (en) 2011-11-04 2013-05-10 Population Diagnostics Inc. Methods and compositions for diagnosing, prognosing, and treating neurological conditions
CN102542180A (zh) * 2012-01-24 2012-07-04 中国农业科学院棉花研究所 检测与评价农作物ssr分子标记冗余性的方法
EP2812452B1 (de) 2012-02-09 2020-05-27 Population Bio, Inc. Verfahren und zusammensetzungen zum screening und zur behandlung von entwicklungsstörungen
US9976180B2 (en) 2012-09-14 2018-05-22 Population Bio, Inc. Methods for detecting a genetic variation in subjects with parkinsonism
CA2922005A1 (en) 2012-09-27 2014-04-03 Population Diagnostics, Inc. Methods and compositions for screening and treating developmental disorders
US10957421B2 (en) 2014-12-03 2021-03-23 Syracuse University System and method for inter-species DNA mixture interpretation
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
US10240205B2 (en) 2017-02-03 2019-03-26 Population Bio, Inc. Methods for assessing risk of developing a viral disease using a genetic test
EP4177356A1 (de) 2018-08-08 2023-05-10 PML Screening, LLC Verfahren zur beurteilung des risikos der entwicklung einer viruserkrankung unter verwendung eines genetischen tests
CN109829879B (zh) * 2018-12-04 2021-01-15 国际竹藤中心 维管束的检测方法及装置
CN113936737B (zh) * 2021-10-14 2023-05-23 温州医科大学附属眼视光医院 一种基于rna基序向量比较rna结构的方法、家族聚类方法、评估变构效应的方法、功能注释的方法、系统和设备
CN114480701B (zh) * 2021-12-29 2022-12-16 河南省农业科学院粮食作物研究所 一种用于预测亲本配合力和杂交种表型的玉米全基因组液相育种芯片

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5492547B1 (en) 1993-09-14 1998-06-30 Dekalb Genetics Corp Process for predicting the phenotypic trait of yield in maize
WO2000042838A2 (en) 1999-01-21 2000-07-27 Pioneer Hi-Bred International, Inc. Molecular profiling for heterosis selection
AU6382000A (en) 1999-07-27 2001-02-13 Iowa State University Research Foundation Inc. Genome analysis
WO2003050748A2 (en) 2001-12-11 2003-06-19 Lynx Therapeutics, Inc. Genetic analysis of gene expression in heterosis
CN1997754A (zh) 2004-02-03 2007-07-11 混合生物科学有限公司 鉴定促进杂种优势和杂种无活力的基因的方法及其用途
US20070134678A1 (en) 2005-12-12 2007-06-14 Rees Dianne M Comparative genome hybridization of organelle genomes
GB2436564A (en) 2006-03-31 2007-10-03 Plant Bioscience Ltd Prediction of heterosis and other traits by transcriptome analysis
US20080083042A1 (en) * 2006-08-14 2008-04-03 David Butruille Maize polymorphisms and methods of genotyping

Also Published As

Publication number Publication date
ES2381457T3 (es) 2012-05-28
US11053554B2 (en) 2021-07-06
WO2009086500A1 (en) 2009-07-09
US20150197821A1 (en) 2015-07-16
EP2229458A1 (de) 2010-09-22
CA2724160C (en) 2017-05-02
US20090170712A1 (en) 2009-07-02
EP2229458B1 (de) 2012-02-08
CA2724160A1 (en) 2009-07-09
US20180142309A1 (en) 2018-05-24
US8996318B2 (en) 2015-03-31

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