WO2002020809A1 - A delivery method for the tumor specific apoptosis inducing activity of apoptin - Google Patents

A delivery method for the tumor specific apoptosis inducing activity of apoptin Download PDF

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WO2002020809A1
WO2002020809A1 PCT/NL2001/000664 NL0100664W WO0220809A1 WO 2002020809 A1 WO2002020809 A1 WO 2002020809A1 NL 0100664 W NL0100664 W NL 0100664W WO 0220809 A1 WO0220809 A1 WO 0220809A1
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apoptin
cells
protein
mbp
anyone
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PCT/NL2001/000664
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French (fr)
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Mathieu Hubertus Maria Noteborn
Pieter Mathijs Voorhoeve
Ying-Hui Zhang
Sirik Rutger Leliveld
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Leadd B.V.
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Priority claimed from EP00203115A external-priority patent/EP1188832A1/en
Application filed by Leadd B.V. filed Critical Leadd B.V.
Priority to AU2001294393A priority Critical patent/AU2001294393A1/en
Publication of WO2002020809A1 publication Critical patent/WO2002020809A1/en

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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/32—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products of oncogenes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/87—Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K2319/00—Fusion polypeptide
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2740/00—Reverse transcribing RNA viruses
    • C12N2740/00011—Details
    • C12N2740/10011—Retroviridae
    • C12N2740/16011—Human Immunodeficiency Virus, HIV
    • C12N2740/16311—Human Immunodeficiency Virus, HIV concerning HIV regulatory proteins
    • C12N2740/16322—New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/005—Assays involving biological materials from specific organisms or of a specific nature from viruses
    • G01N2333/01—DNA viruses

Definitions

  • the invention relates to a method for inducing apoptosis specifically in transformed or malignant cells by introduction of protein with apoptin (vp3) like activity into these cells.
  • Apoptosis is an active and programmed physiological process for eliminating superfluous, altered or malignant cells (Earnshaw, 1995, Duke et al . , 1996). Apoptosis is characterized by shrinkage of cells, segmentation of the nucleus, condensation and cleavage of DNA into domain-sized fragments, in most cells followed by internucleosomal degradation. The apoptotic cells fragment into membrane- enclosed apoptotic bodies. Finally, neighbouring cells and/or macrophages will rapidly phagocytose these dying cells ( yllie et al . , 1980, White, 1996).
  • the apoptotic process can be initiated by a variety of regulatory stimuli (Wyllie, 1995, White 1996, Levine, 1997) . Changes in the cell survival rate play an important role in human pathogenesis, e.g. in cancer development and autoimmune diseases, which is caused by enhanced proliferation but also by decreased cell death (Kerr et al . , 1994, Paulovich, 1997).
  • a variety of chemotherapeutic compounds and radiation have been demonstrated to induce apoptosis in tumor cells, in many instances via wild-type p53 protein (Thompson, 1995, Bellamy et al . , 1995, adherer, 1995, McDonell et al . , 1995).
  • tumorigenic DNA viruses can inactivate p53 by directly binding to it.
  • E6 protein from oncogenic subtypes of the Human Papiloma Virus and the large T antigen of the tumor DNA virus SV40 it (Teodoro, 1997) .
  • Apoptin is a small protein derived from chicken anemia virus (CAV; Noteborn and De Boer, 1995, Noteborn et al . , 1991, Noteborn et al . , 1994; 1998a).
  • CAV chicken anemia virus
  • apoptin can induce apoptosis in human malignant and transformed cell lines, but not in non- transformed human cell cultures.
  • apoptin fails to induce programmed cell death in normal lymphoid, dermal, epidermal, endothelial and smooth-muscle cells.
  • apoptin when normal cells are transformed they become susceptible to apoptosis induced by apoptin. In normal cells, apoptin was found predominantly in the cytoplasm, whereas in transformed or malignant cells i.e. characterized by hyperplasia, metaplasia or dysplasia, it was located in the nucleus (Danen-van Oorschot, 1997 and Noteborn, 1996) . Long-term expression of apoptin in normal human fibroblasts revealed that apoptin has no toxic or transforming activity in these cells (Danen-van Oorschot, 1997 and Noteborn, 1996) .
  • HIV-TAT-mediated process does not depend on endocytosis and is not mediated through a cellular receptor. This explains the remarkable universality that is seen; the proteins can be transduced into all cells tested thus far (Schwarze and Dowdy, 2000) .
  • An efficient method based on the HIV TAT peptide has been developed to make recombinant proteins that can be transduced both in vitro and in vivo .
  • the present invention describes a method, which circumvents this drawback.
  • Transduced cells which take up apoptin-derived protein are only undergoing cell death when they are of a transformed or malignant nature and stay alive when they are normal . This means that the use of apoptin as part of a transduction- capable proteinaceous substance will make it a potent anti- tumor agent .
  • the invention describes another way to introduce (recombinant) apoptin protein into cells, which is by fusion of the protein with a ligand. Receptor mediated internalization then results in the uptake of the fusion protein.
  • apoptin fusion proteins are based on the Epidermal Growth Factor (EGF) , and apoptin-fusion proteins containing ligands binding to the hormone receptors such as thyroid receptors .
  • the invention shows that apoptin protein produced in various ways retains its specific tumor killing ability, and thus opens the way to combine the generalized delivery of protein transduction with the specific anti- tumor activity of apoptin, which results in a new method by which transformed or malignant cells can be eradicated.
  • the invention discloses several examples of apoptin-derived proteinaceous substances such as MBP apoptin cross-linked to a transduction domain such- as TAT can be applied, and also his-tagged apoptin protein containing a transduction domain as a fusion can be applied, either as a non-denatured protein or in denatured renatured format. It is not relevant how a proteinaceous substance, comprising apoptin and a transduction domain or any another delivery compound, is obtained (for example, chemically cross-linked or as produced as a fusion protein) but it is important that, as disclosed herein within the experimental part, that apoptin retains, in all cases, its tumor-specific apoptosis activity.
  • the invention discloses other transduction domains (for example (single-chain) antibodies) , where all share the capacity to introduce the apoptin protein into tumor cells and normal cells alike. Fusion to a ligand may specifically target apoptin to one cell type, but the tumor specificity of apoptin will be pivotal for therapeutic applications with minimal collateral damage to normal cells.
  • EGF-targetted apoptin could be introduced into all EGF-receptor expressing cells. Apoptin will, however, destroy only the tumor cells.
  • the invention provides the application of cell-permeable protein as a drug being much more safe in the long term than gene-therapy approaches possibly causing genetic alterations resulting in diseases such as cancer.
  • the invention provides use of a proteinaceous substance comprising apoptin or functional equivalent or functional fragment thereof for induction of tumor-specific apoptosis.
  • a functional equivalent or functional fragment is any equivalent or fragment having the same kind of activity and specificity as apoptin, possibly in different amounts.
  • said proteinaceous substance further comprises a means to deliver said apoptin to a cell. More preferably said means to deliver apoptin to a cell comprises a protein transduction system (e.g. HIV TAT protein) . Even more preferably said Apoptin is further provided with a fusion protein or tag.
  • the apoptin protein is non-denatured. Typically, said induction of tumor-specific apoptosis is p53-independent .
  • the invention provides herewith a pharmaceutical composition comprising a proteinaceous substance capable of providing tumor specific ⁇ >
  • the proteinaceous substance comprises apoptin or functional equivalent or functional fragment thereof. More preferably, the proteinaceous substance further comprises a means (a protein transduction system, for example TAT) to deliver said apoptin to a cell, a fusion protein and/or a tag.
  • a means a protein transduction system, for example TAT
  • TAT protein transduction system
  • HIV TAT derived from HIV TAT, or of any other known transduction domai .
  • the invention describes the use of CAV-derived VP3 (apoptin) proteinaceous substance as part of a fusion protein, or derivatives of apoptin proteinaceous substances that are selected on their ability to specifically induce apoptosis in tumor cells.
  • the invention also provides a therapy for cancer, autoimmune diseases or related diseases which is based on apoptin or apoptin-like proteinaceous substances .
  • the invention also provides a method to remove aberrant cells in their first stages of transformation and pre- malignant lesions .
  • the invention describes a research tool based on apoptin or apoptin-like proteinaceous substances to unravel apoptosis and transformation pathways or as diagnostics for determining the tumorigenic status of patient material .
  • MBP-vp3 expression construct The vp3 gene was fused in frame in a bacterial expression vector encoding the Maltose-binding protein (MBP) , a 10 Asn linker and a Thrombin-cleavage site.
  • MBP Maltose-binding protein
  • the expression system is based on a modified pMal-c2 plasmid vector (New England Biolabs, USA) , in which the factor Xa site has been replaced by a thrombin-cleavage site. This modified vector was named pMalTB.
  • the resulting fusion product consists of a N-terminal MBP moiety that is separated from the vp3 part by a 10-Asn linker and a thrombin-cleavage site as shown in Figure 1.
  • the DNA and protein sequence of the fusion product is given in Figure 2 and Figure 3, respectively.
  • the resulting plasmid is called pMBP-vp3 and the proteinaceous substance encoded by this plasmid is designated MBP-vp3.
  • the correct sequence of the essential parts of the MBP-vp3 construct was confirmed by means of the Sanger method (Sanger et al . , 1973) and carried out by Base-Clear, Leiden, The Netherlands.
  • the plasmid pMBP-vp3 was transformed in bacteria derived from strain BL21(DE3), and initial expression studies showed that MBP-vp3 protein constitutes roughly 10% of the soluble cytoplasmatic protein, after 3 hours induction with ImM IPTG. Purification was carried out on amylose beads at pH 7.4 and IM NaCI . Subsequently, elution in buffer containing 20mM HEPES 8.0, 50mM NaCI, ImM EDTA, ImM DTT, lOmM maltose, yielded about lOOmg protein per liter of bacterial culture.
  • This purified protein was loaded on a UNO-SI chromatography column (Biorad) , and the fractions that elute at 400-500mM NaCI, 20mM HEPES pH7.4, ImM EDTA were pooled, dialyzed against PBS and concentrated with Millipore UltraFree spin filters .
  • the negative control preparation being the Maltose binding protein (MBP) was produced and purified in the way as been described for MBP-vp3.
  • Vp3 lacking a stop codon was cloned in the Ndel site and Notl site of the IPTG-inducible bacterial expression plasmid pET22b, which provides in frame a 6-histidine tag and a stop codon.
  • the essential regions of the final pVp3H6 DNA construct were sequenced according to the Sanger method and carried out by Base Clear, Leiden, The Netherlands. The map of the essential regions of pVp3H6 is shown in Figure 4a and the DNA and protein sequence of the his-tagged vp3 (apoptin) region is given in Figure 5 and 6, respectively.
  • the Vp3H6 construct was transformed in BL21(DE3) bacteria (Novagen) and a colony was grown at 37°C to an OD600 of ca. 0.6. Expression was then induced by adding 1 mM IPTG and the cells were grown for an additional 3 hrs . After harvesting by centrifugation, the cells were lysed in a Bead-Beater (Biospec Inc.) in lysis buffer (containing 50 mM NaHEPES pH 7.4, 100 mM NaCl, 1 mM EDTA, 1 mM DTT and protein inhibitors (Complete, Boehringer)).
  • the inclusion bodies were harvested by centrifugation and made soluble by suspending in Solubilisation Buffer (containing 50 mM HEPES pH 7.4, 20 mM Glycine, 1 mM EDTA, 10 mM DTT, 8 M Urea) .
  • Solubilisation Buffer containing 50 mM HEPES pH 7.4, 20 mM Glycine, 1 mM EDTA, 10 mM DTT, 8 M Urea
  • the cleared supernatant was loaded directly on UNO-S12 (Biorad) , pre- equilibrated with: 20 mM P0 4 , 5 mM Imidazole, 6 M urea, 1 mM GSH.
  • the Vp3H6 protein was eluted with a NaCl gradient (0-1 M NaCl at 3 ml/min with a total volume of 200 ml) .
  • Vp3H6 eluted between 400 and 650 mM NaCl. It was loaded directly on Ni-NTA (Qiagen) (pre-equilibrated in 20 mM KP0 4 pH 7.4, 5 mM Imidazole, 500 mM NaCl, 6 M urea at 4C) . Next, the column was washed with 20 mM P0 4 pH 7.4, 20 mM Imidazole, 500 mM NaCl, 6 M GuHCl.
  • the GuHCl was removed by washing with 20 mM KP0 4 pH 7.0, 400 mM NaCl, 2 mM MgCl2, 1 mM GSH, and Vp3H6 protein eluted with 20 mM KP0 4 pH 7.4, 400 mM NaCl, 500 mM Imidazole, 2 mM MgC12.
  • the Vp3H6 protein containing peak fractions were pooled and 5 mM EDTA was added to remove Nickel traces.
  • the sample was dialysed (1 volume to 200) to 20 mM KP0 4 pH 6.5, 400 mM NaCl, 2 mM MgC12, 1 mM DTT. Finally, the Vp3H6 protein was concentrated on Centricon YM3 filters (Millipore) to at least 7 mg/ml.
  • Both labeled and unlabeled MBP-vp3 (30 mg ml "1 , in 20 mM HEPES pH 7.4, 0.1 mM EDTA) were filtered over 0.22 ⁇ m and adsorbed to a carbon-coated polioform layer grid. Both samples were incubated with concentrated streptavidin-gold conjugate (5 nm) (KPL Inc.) and stained with 3% uranyl acetate. Electron microscopy was performed on Philips TEM 410 transmission electron microscope .
  • MBP-vp3 In E. coli, MBP-vp3 (or MBP-Apoptin, the terms are used interchangeably herein) is abundantly expressed in a soluble ⁇ form. After affinity chromatography on amylose resin and cation exchange chromatography, MBP-vp3 migrates as a single species on a size exclusion chromatography column (Superose 6 HR 10/30). Its molecular weight was calculated to be 2.5 + 0.3 MDa . This feature was found to be independent- of protein concentration (0.5 to 25 mg ml -1 ). Increased ionic strength (2x PBS) and the presence of detergent (0.5% CHAPSO or 1% Triton X-100) do not disrupt the MBP-vp3 complex.
  • MBP-vp3 is a non-covalently linked complex. In addition to the full-length 58.5 kDa species, three less abundant expression products of 56.7, 53.3 and 50.1 kDa consistently co-purify with MBP-vp3.
  • MBP monoclonal antibody
  • Electron microscopic analysis of purified MBP-vp3 shows a uniform population of globular particles with a diameter of around 20 nm.
  • MBP-vp3 is labeled with sulfo-NHS-LC-biotin and incubated with a streptavidin-gold conjugate (5 nm gold) . Between 5 and 10% of globules show gold binding, while aselective binding is less than 0.1%.
  • Vp3H6 (or Apoptin-H 6 , the terms are used interchangeably herein) was expressed at 20 to 40 mg I "1 as inclusion bodies. Reducing growth temperature or induction time, lowering of the IPTG concentration or varying the lysis conditions did not increase its solubility. After solubilization in 8 M urea, Vp3H6 was purified to near homogeneity using cation exchange chromatography. Immediately afterwards, it can be refolded in one step while bound to Ni 2+ -NTA with a net efficiency of around 50%. Supplementing the expression medium with Zn 2+ did not promote the expression of soluble Vp3H6, nor did it increase its refolding yields.
  • Vp3H6 migrates as a single species with a molecular weight of 400 ⁇ 50 kDa.
  • the particle size is independent of protein concentration (1 to 7 mg ml -1 ) . There are two additional peaks at 30 and 10 kDa, but these do not contain any MAb 111.3-reactive species.
  • the particle size of Vp3H6 is confirmed by DLS, indicating a single solute species with an Rh of 8.7 ⁇ 1.0 nm. The variation in complex size between protein batches remained within experimental error (8 to 10 nm) .
  • the apparent molecular weight of Vp3H6 on SDS-PAGE is 18 kDa.
  • MAb 111.3 There are a number of additional species migrating at around 8, 34 and 48 kDa, which can be detected by MAb 111.3. All of these additional species co-elute with the complex during size exclusion chromatography.
  • the Vp3H6 complex is non-covalent, as shown by non-reducing SDS-PAGE.
  • the smallest MAb 111.3- reactive species corresponds to an N-terminal fragment, which lacks the C-terminal hexahistidine tag. Like in the MBP-vp3 complexes, fragments truncated at the C-terminus remain associated and co-purify.
  • Fluorescent labels used 1,5-IADEANS (IA, dissolved in PBS), fluorescein-maleimide (FM, dissolved in 20 mM Na 3 P0 4 ) , pyrene-N-maleimide (PM, dissolved in DMSO) (all: Molecular Probes) .
  • a fresh stock solution of label (around 10 M) was diluted to a final concentration of 1 to 2 mM in 2 ml of dialyzed MBP-vp3 (5 to 10 mg/ml) in PBS, 0.1 mM EDTA. The mixture was incubated overnight in the dark at 4 °C.
  • IA and FM co-labeling an equimolar amount of label (1 M) was used.
  • the reaction was stopped by adding 10 mM DTT.
  • the non- conjugated label was removed by passing the sample twice over a 5 ml P6DG cartridge (Biorad) , equilibrated in PBS.
  • the level of label incorporation was determined from: [A c / ⁇ iabei] x [MW (kDa) /cp ro tein (mg/ml)]. All samples were stored in the dark at 4 °C.
  • Fluorescence emission and excitation spectra were recorded on a Perkin Elmer LS-50B. Settings: 2.5 to 6 nm slit width,
  • Vp3H6 sample was prepared as described before, spectra were first recorded in the presence of 2 mM MgCl 2 , 0.1 mM ZnCl 2 and then -after a 2 h incubation at RT- in the presence of 5 mM EDTA.
  • the protein concentration of the native sample was determined at 55 ⁇ M. In all cases, ⁇ exc was 280 nm.
  • PM fluorescence was used as a control: a stock solution of PM (5 mM) was reacted with a lOx molar excess of ⁇ -mercaptoethanol ( ⁇ -ME) . This was first diluted 1:100 in MeOH and then to 1 ⁇ M in PBS + 0.1 EDTA. MBP-vp3 -PM was also diluted to 1 ⁇ M in the same buffer. For time course measurements, MBP-vp3 -PM was diluted to 10 ⁇ M (0.6 mg/ml) and incubated in the dark at 4 °C.
  • FRET fluorescence resonance energy transfer
  • MBP-vp3 was labeled with 1,5-IADEANS (IA) and fluorescein-5- maleimide (FM) .
  • the IA label can act as a FRET donor to FM with an R 0 of 46 A, which compares well with the probable dimensions of the Apoptin portion of the MBP-vp3 particle (Garzon-Rodriques et al . , 1997).
  • IA 1,5-IADEANS
  • FM fluorescein-5- maleimide
  • Pyrene excimer fluorescence is characterised by a broad emission peak around 465 nm and occurs when an excited pyrene comes into close proximity with a ground-state pyrene ( ⁇ 10 A) .
  • a ground-state pyrene ⁇ 10 A
  • the pyrene-labeled Apoptin domain in MBP-vp3 -PM undergoes progressive aspecific aggregation, this is likely to give rise to an increase in excimer fluorescence (Panse et al . , 2000) . Therefore, an increase in the monomer/excimer ratio can be regarded as a measure of Apoptin intradomain aggregation.
  • Trp can act as a FRET donor for PM (Johnson et al . , 2001). Since MBP contains eight Trp residues and Apoptin contains none, any aspecific aggregation of Apoptin with MBP is expected to result in a rise in Trp/PM FRET. In proteins, the R 0 of the Trp/PM donor/acceptor pair is between 20 and 30 A (Wu and Brand, 1994) . Since the Trp residues in MBP are evenly distributed throughout the molecule, any increase in Trp/PM FRET is a clear indication of interdomain aggregation (Quiocho et al . , 1997).
  • Trp-PM FRET The initial Trp-PM FRET in MBP-vp3 -PM is very small and after 24 h at 30°C, the changes in Trp/PM FRET are negligible. Both lines of evidence indicate that in MBP-vp3, aspecific aggregation only begins to be a detectable event after more than 6 h of incubation at 30°C. Moreover, aggregation takes place only within the Apoptin domain. Also, any increase in F 5 ⁇ 8 /F 485 can only be ascribed to subunit exchange exclusively up to 6 h of incubation. The incorporation levels for MBP-vp3 -IA and -FM were 150 and 75%, respectively.
  • the fusion protein contains an amount of degradation products that lack C90, 75% incorporation is likely to represent near complete Cys- labeling by FM.
  • a fraction of the IA label reacts with a Lys residue on MBP, which was deduced from a strong Trp/IA FRET in MBP-vp3 -IA (data not shown) .
  • the R 0 of the Trp/IA couple is 22 A, which is comparable to that of Trp/PM (Wu and Brand, 1994) . So, the Trp/IA FRET can only be caused by the IA label located on MBP and not on Apoptin.
  • the heterogeneity of IA-labeling does not affect the relationship between F 518 /F 485 and subunit exchange in MBP- vp3. Furthermore, after 24 h incubation at 30°C, the Rh of labeled MBP-Apoptin complex was indistinguishable from unlabeled and unincubated MBP-vp3, as was shown by DLS. It was also established that MBP-vp3 -IA and MBP-vp3 -FM are equally sensitive to denaturation at 30°C.
  • MBP-vp3 -IA was combined with MBP-vp3 -FM (10:1 label content) and incubated at 30°C in PBS, in the presence of either 0.5 mM EDTA, 0.1 mM ZnCl 2 , 2.5 mM MgCl 2 .
  • F 5 ⁇ 8 /F 485 over the course of 6 h at 30 °C, in PBS/EDTA.
  • MBP-vp3 homoglobules are capable of exchanging either monomers or oligomeric subunits under physiological conditions.
  • the presence of either Mg 2+ or Zn 2+ does little to change the exchange rate.
  • the presence of EDTA greatly improves the thermal stability of the fusion protein.
  • MBP-vp3 was assayed in PBS, 0.5 mM EDTA with either 1% CHAPSO or 1% Triton X-100.
  • the increase in F 518 /F 485 in PBS/EDTA + CHAPSO is only around 30% faster than it is in
  • DNA-affinity chromatography MBP-Apoptin was applied to a ss or dsDNA-cellulose column (1.5 x 2 cm; Pharmacia), equilibrated in 20 mM HEPES pH 7.4, 50 mM NaCl, 1 mM EDTA (or 0.1 mM ZnS0 4 or 2.5 mM MgCl 2 ) .
  • the column was then eluted with a NaCl step gradient (5 CV's per step), 50 to 2000 mM NaCl. ⁇ DNA fragment elution .
  • ⁇ DNA (cI857, strain 7) (Roche) was digested with Rsal (0.3 ⁇ g unit -1 , 2 h 30 minutes) (NEB) , after which Rsal was deactivated by heating at 65°C for 20 minutes.
  • the digest (10 mM Bis-TrisHCl pH 7.0, 10 mM MgCl 2 ) was mixed directly with MBP-vp3 (50 ⁇ g DNA/mg protein) and incubated on ice for 15 minutes.
  • the MBP-vp3 -DNA complex was loaded on an amylose column (0.5 x 1.0 cm), which was eluted with a NaCl step gradient (5 CV's per step), 50 to 2000 mM NaCl. Fractions were desalted using Qiaquick spin filters (Qiagen) and separated on 1.2% agarose .
  • MBP-vp3 displays a higher for large fragments, but this is expected to stem from a cooperatibe binding effect. Therefore, we conclude that MBP-vp3 is a general DNA-binding protein without significant sequence-specificity. Furthermore, both the MBP-vp3 /DNA and DNA/ MBP-vp3 elution profiles show that a fraction of the MBP-vp3 /DNA complexes are resistant to treatment with 2 M NaCl. Apparently, MBP-Apoptin is able to form particularly heterogeneous complexes with DNA, some of which are effectively irreversible.
  • human normal primary mesenchymal stem cells and human normal primary hepatocytes from BioWhittaker, which were cultured no more than 1-3 passages in medium and under conditions recommended by the manufacturer.
  • CMV-FADD microinjection into the nucleus of a DNA plasmid
  • the cells were micro-injected in the cytoplasm with protein MBP- vp3, Vp3H6, or MBP alone at 3 mg/ml using an Eppendorf micro-injector with the injection-pressure condition of 0.5 psi, or in the nucleus in the case of CMV-FADD DNA (50 ng/ul) .
  • the cells were co- injected with Dextran-Rhodamine (MW: 70 kDa; Molecular Probes, Leiden, The Netherlands) to be able to later identify injected cells.
  • the cells were incubated at 37°C after injection until the cells were fixed with formaldehyde-methanol-acetone. Presence of MBP-apoptin or his-tagged apoptin protein was determined with immuno- histochemistry with antibodies directed against MBP (monoclonal mouse anti-MBP-clone R29; Zymed Laboratories,
  • Presence of FADD was determined with a monoclonal FADD antibody (Transduction Laboratories) . Apoptosis was counted as abnormal nuclear morphology after counter- staining with DAPI and examination with an immunofluorescence microscope (Telford et al . , 1992).
  • the following experiment shows an example of an application of the proteinaceous apoptin substance for studying the tumor-specific apoptosis pathway, which can be induced by apoptin.
  • Saos-2 cells were incubated with transcription inhibitors cycloheximide (20 ug/ml or actinomycin D (10 ug/ml) or translation inhibitors puromycin (10 ug/ml) and emetin (10 ug/ml), or without these inhibitors.
  • the transcription- as well as the translation-inhibitors were obtained from the company Sigma, USA.
  • the inhibition efficacy of the various transcription- and/or translation- inhibitors was proven to be accurate in Saos-2 cells by micro-injecting Saos-2 cells with a plasmid expressing the Green-fluorescence protein (GFP) .
  • GFP Green-fluorescence protein
  • no GFP protein could be produced by the Saos-2 cells when they were treated with any of the 4 translation- or transcription- inhibitors.
  • the Saos-2 cells micro-injected with the GFP-encoding plasmid produced the GFP in clearly detectable amounts as visualized by direct fluorescence techniques .
  • TAT tumor-specific (single-chain) antibodies or EGF as a delivery means .
  • Lysine-Valine-C-terminal of SV40 large T antigen and at its C-terminus a histidine tag, also reveals apoptotic activity in human tumor cells.
  • the used expression plasmid encoding the apoptin protein fragment NLS-vp3/l-69-H6 is shown in Figure 4b.
  • the proteinaceous substance NLS-vp3/l-69-H6 was purified and produced as has been described for the above mentioned histidine-tagged apoptin (vp3) proteins.
  • Human Saos-2 cells were micro-injected with NLS-vp3/l- 69-H6 protein as described for the above-mentioned micro- injected proteinaceous substances.
  • the human tumor cells were micro-injected with the non-apoptotic protein MBP and as positive control MBP-vp3 protein was micro-injected.
  • NLS-vp3/l-69-H6 protein became apoptotic, whereas the cells containing MBP protein did not . Comparable results were obtained with NLS-VP3/1-80-H6.
  • proteinaceous substances containing the complete apoptin protein sequence or a specific apoptin protein fragment can induce apoptosis in human tumor cells.
  • MBP-Apoptin (66-121) .
  • the C-terminal domain of MBP-Apoptin (66-121) .
  • the protein was expressed and purified as described for the MBP-vp3 protein.
  • the protein is called MBP-vp3-66-
  • MBP-vp3 -66-121 In order to determine whether additional tumor-specific fragments of Apoptin could be generated, we made and tested MBP-vp3 -66-121 in microinjection/im unofluorescence experiments in Saos-2 tumor cells and low-passage CD31- human normal dermal fibroblast cells exactly as described previously. MBP-vp3, as a control, induced tumor-specific nuclear localization and death in Saos-2 but not CD31- fibroblasts. Interestingly, the MBP-vp3 -66-121 protein behaved very similarly to the full-length protein both in function as well as in specificity.
  • transductxon-domain-apoptin construct A DNA was constructed that encodes in frame for respectively a 6xHis-tag, a TAT-transduction domain, an HA-tag, followed by the coding sequence for apoptin and a stop codon. This construct was cloned in frame in a petl6b (Novagen) expression vector, which encodes for a lOx His-tag followed by the insert. The resulting construct is referred to as pETXNvp3, and the resulting protein will be referred to as XNvp3. See for the DNA sequence, figure 7 and for the protein sequence, figure 8.
  • a bacterial pellet was obtained by centrifugation and sonicated on ice in 30 ml lysis buffer containing 150 mM NaCl and 0.5% Triton. After centrifugation the pellet was again sonicated as above, and inclusion bodies were centrifuged as a pellet. Expression of XNvp3 was confirmed by SDS-PAGE followed by Coomassie-blue staining and Western- blot analysis with 111.3, a vp3-protein specific monoclonal antibody. The inclusion bodies were re-suspended in Nickel
  • Loading Buffer (NLB;8M Urea, IM NaCl, 50mM Phosphate buffer pH 7.5, 40mM imidazole) and loaded onto a 4 ml Ni-NTA column (Qiagen) equilibrated in the same buffer.
  • the column was washed with 30 ml NLB, and washed with 10 ml MonoS Loading Buffer (MSLB;8M Urea, 250mM NaCl, 50mM phosphatebuffer pH 7.5) supplemented with 40mM imidazole.
  • MSLB MonoS Loading Buffer
  • the protein containing fractions were pooled and subsequently loaded on a 5 ml Mono-S chromatography column (Pharmacia) and washed with 2 column volumes MSLB. Refolding and elution was performed by washing the Mono-S column with 2M NaCl, 50mM phosphate buffer pH 7.5. The protein containing fractions were pooled and the buffer was exchanged on a PD10 column (Pharmacia) against DMEM or PBS. The protein was aliquoted and frozen at -80°C until further use.
  • XNvp3 protein was added to cultured Saos-2 cells and VH10 cells at 50nM concentration in medium. After one hour the cells were fixed with 80% acetone, and the intracellular presence of XNvp3 protein was tested using antibodies 12CA5 (directed against the HA-tag) or 111.3 antibodies (directed against vp3 protein) .
  • XNvp3 was located in the nucleus, as seen with confocal laser microscopy. This shows that XNvp3 can transduce into cells.
  • XNvp3 protein Binding to Apoptin Associated Proteins in COS cells .
  • XNvp3 protein was incubated with COS cells that had been transfected 48 hours earlier with expression vectors encoding myc-tagged AAP1, which is one of the apoptin-associating proteins, or LacZ . Subsequently, the cells were lysed and an immuno- precipitation (IP) was performed with 12CA5.
  • IP immuno- precipitation
  • COS cells transfected with the same expression vectors but not incubated with XNvp3 were treated the same way.
  • COS cells transfected with the same expression vectors together with an expression vector for HA-tagged vp3 were treated the same way.
  • the IP's were analyzed for the presence of the myc-tagged proteins by SDS- PAGE and Western blotting with 9E10 (against the myc-tag) .
  • XNvp3 can bind to an intracellular AAP in a similar fashion as apoptin (vp3) encoded by a transfected plasmid. Therefore, one can conclude that apoptin proteinaceous substances reveal essential biological activities of apoptin i.e. binding to its cellular counterparts.
  • VHIO cells were cultured in medium containing 10 or 50 nM XNvp3, but also in a five time higher concentration at 250 nM. After four days, no significant apoptosis could be detected in the VH10 cells.
  • MBPvp3 was purified as described for the above-mentioned micro-injection experiments. The protein was then chemically conjugated to synthetic TAT-peptide (aa 37-72, CFITKALGISYGRKKRRQRRPPQGSQTHQVSLS Q) as described by Fawell et al. (1994) . In short, the purified MBP-vp3 protein was activated with iodoacetamide, and desalted and concentrated. o ⁇ > o
  • MBP-vp3-TAT can bind to apoptin associated Proteins as well as transfected vp3 in cells.
  • MBP-vp3-TAT was incubated with COS cells that had been transfected 48 hours earlier with an expression vector encoding myc-tagged AAP-1 or LacZ. After 16 hours, the cells were lysed and anti MBP-vp3-TAT i munoprecipitation (IP) was performed with anti-MBP antibodies.
  • IP MBP-vp3-TAT i munoprecipitation
  • COS cells transfected with the same expression vectors together with an expression vector for HA-tagged vp3 were lysed and an IP was performed with anti-HA antibodies.
  • the IP's were analyzed for the presence of the myc-tagged proteins by SDS-PAGE and Western blotting with 9E10 (against the myc-tag) .
  • the results show that MBP-vp3-TAT can bind to intracellular AAP's proving again that the apoptin proteinaceous substance contains the biological activity as seen for apoptin produced by transcription and translation of its DNA.
  • VH10 cells were cultured in medium containing 1 or 5 microgram/ml MBP-vp3-TAT, but also in a five time higher concentration at 25 microgram/ml. After four days, no significant apoptosis could be detected in the VH10 cells.
  • PSMA Prostate-specific membrane antigen
  • LNCaP prostate cancer cell line has an estimated 180,000 molecules of PSMA per cell on its surface. Devitt et al . (2000) developed the J591 monoclonal, which internalises the prostate cancer cell upon binding to to o o O
  • apoptin as well as for MBP-apoptin protein products.
  • delivery to a cell via surface antigens of a protein product containing apoptin will result in induction of tumor-specific apoptosis.
  • PC3M cells lacking HER2 protein, did not undergo apoptosis upon treatment with scFvHER-MBP-apoptin protein.
  • Addition of the chemically coupled scFvHER/MBP-apoptin products to the medium of primary human prostate cells also did not result in induction of apoptosis, which shows the safety of the approach of delivery of apoptin protein chemically coupled to a scFv molecule, which can deliver apoptin into the cell.
  • Figure 1 shows the map of the MBP-vp3 fusion product inclusive the Asn-stretch and the thrombin cleavage site.
  • Figure 2 shows the partial DNA sequence of MBP-vp3. Underlined are the ATG-initiation codon of vp3 (apoptin) as well as the TAA-stop codon of vp3 (apoptin) .
  • the upstream sequences of the ATG-codon of vp3 are from the MBP construct showing that the apoptin sequence is in frame with the MBP sequence .
  • Figure 3 shows the protein sequence of MBP-vp3.
  • Figure 4a shows the map of vp3-H6, which is the complete apoptin (vp3) amino acid sequence containing 6 histidine residues at the C-terminal end.
  • Figure 4b shows the map of NLS-vp3/l-69-H6 , which is made of the SV40 LT Nuclear Localization Signal (NLS) , apoptin (vp3) amino-acid sequences 1-69 (1-69) and a C-terminal tag of 6 histidine residues.
  • Figure 5 shows the DNA sequence of plasmid encoding the vp3H6 construct .
  • the Ndel and Notl sites are underlined in the shown DNA sequence.
  • the vp3- and histidine-sequences are cloned in the Ndel and Notl sites of plasmid pET22b.
  • Figure 6 shows the protein sequence of the vp3H6 protein product .
  • Figure 7 shows the partial DNA sequence of pET-XNvp3 starting at the ATG of its Ncol site till the stop codon of apoptin (vp3) .
  • Figure 8 shows the amino acid sequence of the XNvp3 protein product .
  • Bax is present as a high molecular weight oligomer/complex in the mitochiondrial membrane of apoptotic cells. J. Biol. Chem. 276(15), 11615-11623.
  • Caspase activation involves the formation of the Apoptosome, a large (700 kDa) caspase-activating complex. J. Biol. Chem. 274(32), 22686-22692.
  • BAG-1 inhibits p53 -induced but not apoptin-induced apoptosis. Apoptosis 2, 395-402.
  • Trojan peptides the penetratin system for intracellular delivery. Trends in Cell Biology 8, 84-87. Duke, R.C., Ocjius, D.M., Young, J, D-E. (1996). Cell suicide in health and disease. Scientific American December 1996, 48-55.
  • Soluble amyloid A ⁇ -(l-40) exists as a stable di er at low concentrations. J. Biol. Chem. 272(34), 21037-21044.

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Abstract

The invention relates to the field of apoptosis. The invention provides novel therapeutic substances, for example novel therapeutic proteinaceous compounds that can contain apoptin alone or jointly with other proteinaceous protein or protein fragments, especially in those cases when cells are derailed such as cancer-, auto-immune-derived cells.

Description

Title: A delivery method for the tumor specific apoptosis inducing activity of apoptin.
Brief description of the invention
The invention relates to a method for inducing apoptosis specifically in transformed or malignant cells by introduction of protein with apoptin (vp3) like activity into these cells.
Background of the invention Apoptosis is an active and programmed physiological process for eliminating superfluous, altered or malignant cells (Earnshaw, 1995, Duke et al . , 1996). Apoptosis is characterized by shrinkage of cells, segmentation of the nucleus, condensation and cleavage of DNA into domain-sized fragments, in most cells followed by internucleosomal degradation. The apoptotic cells fragment into membrane- enclosed apoptotic bodies. Finally, neighbouring cells and/or macrophages will rapidly phagocytose these dying cells ( yllie et al . , 1980, White, 1996). • The apoptotic process can be initiated by a variety of regulatory stimuli (Wyllie, 1995, White 1996, Levine, 1997) . Changes in the cell survival rate play an important role in human pathogenesis, e.g. in cancer development and autoimmune diseases, which is caused by enhanced proliferation but also by decreased cell death (Kerr et al . , 1994, Paulovich, 1997). A variety of chemotherapeutic compounds and radiation have been demonstrated to induce apoptosis in tumor cells, in many instances via wild-type p53 protein (Thompson, 1995, Bellamy et al . , 1995, Steller, 1995, McDonell et al . , 1995).
Many tumors, however, acquire a mutation in p53 during their development, often correlating with poor response to cancer therapy. Certain transforming genes of tumorigenic DNA viruses can inactivate p53 by directly binding to it. Examples of such agents are the E6 protein from oncogenic subtypes of the Human Papiloma Virus and the large T antigen of the tumor DNA virus SV40 it (Teodoro, 1997) .
Another example of the emergence of a strong resistance to various apoptosis-inducing chemotherapeutic agents in (leukemic) tumors is the association of a high expression level of the proto-oncogene Bcl-2 or Bcr-abl with reduced sensitivity of these tumors to therapy (Hockeriberry 1994, Sachs and Lotem, 1997) .
Apoptin (also called vp3 ; the terms may be used interchangeable herein) is a small protein derived from chicken anemia virus (CAV; Noteborn and De Boer, 1995, Noteborn et al . , 1991, Noteborn et al . , 1994; 1998a). By means of transient transfection using plasmids encoding apoptin it was shown that apoptin can induce apoptosis in human malignant and transformed cell lines, but not in non- transformed human cell cultures. In vitro, also by means of transient transfections, apoptin fails to induce programmed cell death in normal lymphoid, dermal, epidermal, endothelial and smooth-muscle cells. However, when normal cells are transformed they become susceptible to apoptosis induced by apoptin. In normal cells, apoptin was found predominantly in the cytoplasm, whereas in transformed or malignant cells i.e. characterized by hyperplasia, metaplasia or dysplasia, it was located in the nucleus (Danen-van Oorschot, 1997 and Noteborn, 1996) . Long-term expression of apoptin in normal human fibroblasts revealed that apoptin has no toxic or transforming activity in these cells (Danen-van Oorschot, 1997 and Noteborn, 1996) . The fact that apoptin does not induce apoptosis in normal human cells, at least not in vitro, suggests that a toxic effect of apoptin treatment in vivo.will be very low. Noteborn and Pietersen (1998) and ω o ' . Ul o o
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Loewenstein (1988) and Frankel and Pabo (1988) , for the HIV TAT protein. Henceforth it was shown that synthetic peptides containing the amino acids 48 to 60 derived from the HIV TAT protein could transduce into cells (Vives et al . , 1997) . This ability can be conferred in trans by chemical cross- linking the TAT-derived protein transduction domain to the cargo protein, enabling proteins as large as 120 kDa to be delivered intra-cellularly, in vitro as well as in vivo (Fawell et al . , 1994). Other transduction domains have been described in the Antennapedia protein from Drosophila melanogaster (Derossi et al . , 1998) as well as in other homeodomain proteins, the Herpes Simplex Virus vp22 protein (Elliott et al . , 1999), and several synthetic peptides (Lindgren et al . , 2000). The HIV-TAT-mediated process does not depend on endocytosis and is not mediated through a cellular receptor. This explains the remarkable universality that is seen; the proteins can be transduced into all cells tested thus far (Schwarze and Dowdy, 2000) . An efficient method based on the HIV TAT peptide has been developed to make recombinant proteins that can be transduced both in vitro and in vivo . Significantly, when administered in vivo, all tissues, including the brain, can be targeted with a recombinant protein (Schwarze, 1999) using this system. Another class of delivery method is based on the hydrophobic core region of signal peptides (Hawiger, 1999) . The cellular import of fusions or conjugations between these transduction domains and a cargo are concentration and temperature sensitive. It is, however, cell type independent and a whole range of cells have been shown to be susceptible to internalization of cargo mediated by this class of transduction domains.
In general for the transduction protein technology the drawback is that it has not yet been possible to target a specific (tumor) cell compartment with this system. The lack of tumor specific targeting has thus far prevented the development of an efficient anti-tumor therapy, which uses protein transduction.
In a preferred embodiment, the present invention describes a method, which circumvents this drawback. Transduced cells, which take up apoptin-derived protein are only undergoing cell death when they are of a transformed or malignant nature and stay alive when they are normal . This means that the use of apoptin as part of a transduction- capable proteinaceous substance will make it a potent anti- tumor agent .
The invention describes another way to introduce (recombinant) apoptin protein into cells, which is by fusion of the protein with a ligand. Receptor mediated internalization then results in the uptake of the fusion protein. Examples for such apoptin fusion proteins are based on the Epidermal Growth Factor (EGF) , and apoptin-fusion proteins containing ligands binding to the hormone receptors such as thyroid receptors .
All these methods hinge on the activity of the recombinant or purified cargo-protein in the target cell. In particular, the invention shows that apoptin protein produced in various ways retains its specific tumor killing ability, and thus opens the way to combine the generalized delivery of protein transduction with the specific anti- tumor activity of apoptin, which results in a new method by which transformed or malignant cells can be eradicated. Thus, the invention discloses several examples of apoptin-derived proteinaceous substances such as MBP apoptin cross-linked to a transduction domain such- as TAT can be applied, and also his-tagged apoptin protein containing a transduction domain as a fusion can be applied, either as a non-denatured protein or in denatured renatured format. It is not relevant how a proteinaceous substance, comprising apoptin and a transduction domain or any another delivery compound, is obtained (for example, chemically cross-linked or as produced as a fusion protein) but it is important that, as disclosed herein within the experimental part, that apoptin retains, in all cases, its tumor-specific apoptosis activity.
Furthermore, the invention discloses other transduction domains (for example (single-chain) antibodies) , where all share the capacity to introduce the apoptin protein into tumor cells and normal cells alike. Fusion to a ligand may specifically target apoptin to one cell type, but the tumor specificity of apoptin will be pivotal for therapeutic applications with minimal collateral damage to normal cells. As an example, EGF-targetted apoptin could be introduced into all EGF-receptor expressing cells. Apoptin will, however, destroy only the tumor cells. The invention provides the application of cell-permeable protein as a drug being much more safe in the long term than gene-therapy approaches possibly causing genetic alterations resulting in diseases such as cancer.
Therefore, the invention provides use of a proteinaceous substance comprising apoptin or functional equivalent or functional fragment thereof for induction of tumor-specific apoptosis. A functional equivalent or functional fragment is any equivalent or fragment having the same kind of activity and specificity as apoptin, possibly in different amounts. Preferably said proteinaceous substance further comprises a means to deliver said apoptin to a cell. More preferably said means to deliver apoptin to a cell comprises a protein transduction system (e.g. HIV TAT protein) . Even more preferably said Apoptin is further provided with a fusion protein or tag. Preferably the apoptin protein is non-denatured. Typically, said induction of tumor-specific apoptosis is p53-independent .
Use as provided by the invention is particularly useful from a therapeutic viewpoint. The invention provides herewith a pharmaceutical composition comprising a proteinaceous substance capable of providing tumor specific κ>
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according to the invention, culturing said cells and determining for example, the percentage of apoptosis of cells in said sample or determining the localization of the proteinaceous substance. The said proteinaceous substance comprises apoptin or functional equivalent or functional fragment thereof. More preferably, the proteinaceous substance further comprises a means (a protein transduction system, for example TAT) to deliver said apoptin to a cell, a fusion protein and/or a tag. The invention further provides evidence that the proteinaceous substance according to the invention can be either non-denatured or refolded.
The invention will be explained in more detail in the following description, which is not limiting the invention.
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derived from HIV TAT, or of any other known transduction domai .
The invention describes the use of CAV-derived VP3 (apoptin) proteinaceous substance as part of a fusion protein, or derivatives of apoptin proteinaceous substances that are selected on their ability to specifically induce apoptosis in tumor cells. The invention also provides a therapy for cancer, autoimmune diseases or related diseases which is based on apoptin or apoptin-like proteinaceous substances .
The invention also provides a method to remove aberrant cells in their first stages of transformation and pre- malignant lesions .
The invention describes a research tool based on apoptin or apoptin-like proteinaceous substances to unravel apoptosis and transformation pathways or as diagnostics for determining the tumorigenic status of patient material .
Experimental part
1. Production and purification of MBP-apoptin (MBP-vp3) protein
2.2 MBP-vp3 expression construct The vp3 gene was fused in frame in a bacterial expression vector encoding the Maltose-binding protein (MBP) , a 10 Asn linker and a Thrombin-cleavage site. The expression system is based on a modified pMal-c2 plasmid vector (New England Biolabs, USA) , in which the factor Xa site has been replaced by a thrombin-cleavage site. This modified vector was named pMalTB. A PCR fragment consisting of the complete apoptin or vp3 sequences and at the 5' -end a BamHl and at the 3 '-end a Sail site, was cloned in pMalTB. The resulting fusion product consists of a N-terminal MBP moiety that is separated from the vp3 part by a 10-Asn linker and a thrombin-cleavage site as shown in Figure 1. The DNA and protein sequence of the fusion product is given in Figure 2 and Figure 3, respectively. The resulting plasmid is called pMBP-vp3 and the proteinaceous substance encoded by this plasmid is designated MBP-vp3. The correct sequence of the essential parts of the MBP-vp3 construct was confirmed by means of the Sanger method (Sanger et al . , 1973) and carried out by Base-Clear, Leiden, The Netherlands.
1.2 Expression and purification of MBP-vp3
The plasmid pMBP-vp3 was transformed in bacteria derived from strain BL21(DE3), and initial expression studies showed that MBP-vp3 protein constitutes roughly 10% of the soluble cytoplasmatic protein, after 3 hours induction with ImM IPTG. Purification was carried out on amylose beads at pH 7.4 and IM NaCI . Subsequently, elution in buffer containing 20mM HEPES 8.0, 50mM NaCI, ImM EDTA, ImM DTT, lOmM maltose, yielded about lOOmg protein per liter of bacterial culture. This purified protein was loaded on a UNO-SI chromatography column (Biorad) , and the fractions that elute at 400-500mM NaCI, 20mM HEPES pH7.4, ImM EDTA were pooled, dialyzed against PBS and concentrated with Millipore UltraFree spin filters .
The negative control preparation being the Maltose binding protein (MBP) was produced and purified in the way as been described for MBP-vp3.
2. Expression and purification of His-tagged apoptin
2. 1 His- tagged vp3 construct
Vp3 lacking a stop codon was cloned in the Ndel site and Notl site of the IPTG-inducible bacterial expression plasmid pET22b, which provides in frame a 6-histidine tag and a stop codon. The essential regions of the final pVp3H6 DNA construct were sequenced according to the Sanger method and carried out by Base Clear, Leiden, The Netherlands. The map of the essential regions of pVp3H6 is shown in Figure 4a and the DNA and protein sequence of the his-tagged vp3 (apoptin) region is given in Figure 5 and 6, respectively.
2.2 Vp3H6 expression and purification
The Vp3H6 construct was transformed in BL21(DE3) bacteria (Novagen) and a colony was grown at 37°C to an OD600 of ca. 0.6. Expression was then induced by adding 1 mM IPTG and the cells were grown for an additional 3 hrs . After harvesting by centrifugation, the cells were lysed in a Bead-Beater (Biospec Inc.) in lysis buffer (containing 50 mM NaHEPES pH 7.4, 100 mM NaCl, 1 mM EDTA, 1 mM DTT and protein inhibitors (Complete, Boehringer)). The inclusion bodies were harvested by centrifugation and made soluble by suspending in Solubilisation Buffer (containing 50 mM HEPES pH 7.4, 20 mM Glycine, 1 mM EDTA, 10 mM DTT, 8 M Urea) . The cleared supernatant was loaded directly on UNO-S12 (Biorad) , pre- equilibrated with: 20 mM P04, 5 mM Imidazole, 6 M urea, 1 mM GSH. The Vp3H6 protein was eluted with a NaCl gradient (0-1 M NaCl at 3 ml/min with a total volume of 200 ml) . Vp3H6 eluted between 400 and 650 mM NaCl. It was loaded directly on Ni-NTA (Qiagen) (pre-equilibrated in 20 mM KP04 pH 7.4, 5 mM Imidazole, 500 mM NaCl, 6 M urea at 4C) . Next, the column was washed with 20 mM P04 pH 7.4, 20 mM Imidazole, 500 mM NaCl, 6 M GuHCl. The GuHCl was removed by washing with 20 mM KP04 pH 7.0, 400 mM NaCl, 2 mM MgCl2, 1 mM GSH, and Vp3H6 protein eluted with 20 mM KP04 pH 7.4, 400 mM NaCl, 500 mM Imidazole, 2 mM MgC12. The Vp3H6 protein containing peak fractions were pooled and 5 mM EDTA was added to remove Nickel traces. The sample was dialysed (1 volume to 200) to 20 mM KP04 pH 6.5, 400 mM NaCl, 2 mM MgC12, 1 mM DTT. Finally, the Vp3H6 protein was concentrated on Centricon YM3 filters (Millipore) to at least 7 mg/ml.
3. Characteristics of purified MBP-vp3 and Vp3H6 protein
3.1 Recombinant MBP-vp3 and Vp3H6 form non-covalent multimedia complexes
Dynamic Light Scattering
All dynamic light scattering (DLS) measurements were recorded on a DynaPro-MS/X (Protein Solutions Inc.), at room temperature. BSA was used as a control (0.5 mg ml-1 in PBS, 0.5 mM EDTA). MBP-vp3 was measured at 10 μM (PBS, 0.5 mM EDTA), refolded Vp3H6 at 35 μM (in 20 mM KP04 pH 6.5, 400 mM NaCl, 2 mM MgCl2) . Per experiment, between 20 and 40 measurements were collected. Protein molecular weight (kDa) was estimated from hydrodynamic radius (Rh) by: MW (kDa) = [1.68 x Rh]2-34. Electron microscopic analysis .
Biotin labeling. Fresh MBP-vp3 (20 mg ml-1, 0.1 M NaHC03 pH 8.3) was incubated with 5 mM sulfo-NHS-LC-biotin (Molecular Probes Inc.) at room temperature for 3 hours. The reaction was terminated by adding 10 mM ethanolamine. The labeled protein was passed over a PD-10 desalting column (Pharmacia), and equilibrated in 20 mM HEPES pH 7.4, 0.1 mM EDTA, to remove unincorporated label. Electron microscopy. Both labeled and unlabeled MBP-vp3 (30 mg ml"1, in 20 mM HEPES pH 7.4, 0.1 mM EDTA) were filtered over 0.22 μm and adsorbed to a carbon-coated polioform layer grid. Both samples were incubated with concentrated streptavidin-gold conjugate (5 nm) (KPL Inc.) and stained with 3% uranyl acetate. Electron microscopy was performed on Philips TEM 410 transmission electron microscope .
3.1.1 MBP-vp3 In E. coli, MBP-vp3 (or MBP-Apoptin, the terms are used interchangeably herein) is abundantly expressed in a soluble ■ form. After affinity chromatography on amylose resin and cation exchange chromatography, MBP-vp3 migrates as a single species on a size exclusion chromatography column (Superose 6 HR 10/30). Its molecular weight was calculated to be 2.5 + 0.3 MDa . This feature was found to be independent- of protein concentration (0.5 to 25 mg ml-1). Increased ionic strength (2x PBS) and the presence of detergent (0.5% CHAPSO or 1% Triton X-100) do not disrupt the MBP-vp3 complex. Its size was corroborated by dynamic light scattering (DLS), which showed only one solute species with an average hydrodynamic radius (Rh) of 17.9 + 2.0 nm (corresponding to an estimated molecular weight of 2.9 ± 0.6 MDa) . The variation in the average diameter of the MBP-vp3 particle between different protein batches remained within experimental error (16 to 20 nm) . As demonstrated by reducing and non-reducing SDS-PAGE, MBP-vp3 is a non-covalently linked complex. In addition to the full-length 58.5 kDa species, three less abundant expression products of 56.7, 53.3 and 50.1 kDa consistently co-purify with MBP-vp3. All three are detectable by anti- Apoptin monoclonal antibody (MAb) 111.3 (epitope: residues 18 to 23, Danen-van Oorschot et al . , 1997). Since MBP was found to be highly protease-resistant, these products arise from partial C-terminal degradation of the Apoptin moiety. The smallest degradation product is an MBP fusion to an N- terminal fragment of Apoptin of approximately 70 residues. Under native conditions, these products cannot be removed by conventional methods, which demonstrates that the degradation products are still incorporated into the MBP-vp3 complex. In the linker peptide that connects the MBP and Apoptin moieties, there is a thrombin cleavage site. When the fusion protein is digested with thrombin, Apoptin remains part of the complex whereas MBP is released. Hence, all biophysical and functional studies are conducted with intact MBP-vp3. Trace amounts of unfused MBP do not co-elute with MBP-vp3, showing that the Apoptin moiety has a negligible affinity for MBP. We conclude that the multimerization behaviour of MBP-vp3 depends, probably, entirely on the Apoptin moiety.
Electron microscopic analysis of purified MBP-vp3 shows a uniform population of globular particles with a diameter of around 20 nm. For identification, MBP-vp3 is labeled with sulfo-NHS-LC-biotin and incubated with a streptavidin-gold conjugate (5 nm gold) . Between 5 and 10% of globules show gold binding, while aselective binding is less than 0.1%. 3 . 1 . 2 Vp3H6
Vp3H6 (or Apoptin-H6, the terms are used interchangeably herein) was expressed at 20 to 40 mg I"1 as inclusion bodies. Reducing growth temperature or induction time, lowering of the IPTG concentration or varying the lysis conditions did not increase its solubility. After solubilization in 8 M urea, Vp3H6 was purified to near homogeneity using cation exchange chromatography. Immediately afterwards, it can be refolded in one step while bound to Ni2+-NTA with a net efficiency of around 50%. Supplementing the expression medium with Zn2+ did not promote the expression of soluble Vp3H6, nor did it increase its refolding yields. Nevertheless, the presence of certain divalent cations did improve the solubility of purified, refolded Vp3H6. In this respect, Mg2+ was the most effective of all cations tested. However, refolded Vp3H6 has only a mild preference for Mg2+, when compared to Ca2+, Zn2+ or Mn2+. Hence, we assume that the stabilizing effect of Mg2+ relies on aspecific shielding of charged residues.
On Superose 6 HR 10/30, refolded Vp3H6 migrates as a single species with a molecular weight of 400 ± 50 kDa. The particle size is independent of protein concentration (1 to 7 mg ml-1) . There are two additional peaks at 30 and 10 kDa, but these do not contain any MAb 111.3-reactive species. The particle size of Vp3H6 is confirmed by DLS, indicating a single solute species with an Rh of 8.7 ± 1.0 nm. The variation in complex size between protein batches remained within experimental error (8 to 10 nm) . The apparent molecular weight of Vp3H6 on SDS-PAGE is 18 kDa. There are a number of additional species migrating at around 8, 34 and 48 kDa, which can be detected by MAb 111.3. All of these additional species co-elute with the complex during size exclusion chromatography. The Vp3H6 complex is non-covalent, as shown by non-reducing SDS-PAGE. The smallest MAb 111.3- reactive species corresponds to an N-terminal fragment, which lacks the C-terminal hexahistidine tag. Like in the MBP-vp3 complexes, fragments truncated at the C-terminus remain associated and co-purify.
We demonstrate with a range of techniques, that recombinant constructs of Apoptin form multimeric globules of a distinct size. The average sizes of MBP-vp3 and Vp3H6 homoglobules suggest a monomer content of 45 and 30 subunits, respectively. However, the presence of an 18-residue linker between MBP and Apoptin in the MBP-vp3 complex will lead to an overestimation of its hydrodynamic radius. Probably both types of Apoptin homoglobules consist of 30 to 40 subunits, which suggests that they are structurally equivalent. Our EM studies indicate that Apoptin multimers have a roughly spherical shape.
Our findings could indicate that Apoptin is active as a multimeric species. We suggest that Apoptin' s propensity to form globular multimeric aggregates of a well-defined size is crucial for its biological function. Also other apoptosis associated proteins form multimers (Bax, Apaf-1) , and these multimeric complexes probably have a well-defined internal structure. Bax oligomers form pores in the mitochondrial outer membrane, releasing cytochrome c into the cytoplasm (Antonsson et al, 2000 and 2001) . Apaf-1 activates caspase-9 upon oligomerisation (Cain et al, 1999) . If Apoptin homoglobules have a well-defined internal structure, they may likewise exhibit structural or enzymatical characteristics . 3.2 MBP-vp3 subunits are exchanged between homoglobules
Fluorescent labeling
Fluorescent labels used: 1,5-IADEANS (IA, dissolved in PBS), fluorescein-maleimide (FM, dissolved in 20 mM Na3P04) , pyrene-N-maleimide (PM, dissolved in DMSO) (all: Molecular Probes) . A fresh stock solution of label (around 10 M) was diluted to a final concentration of 1 to 2 mM in 2 ml of dialyzed MBP-vp3 (5 to 10 mg/ml) in PBS, 0.1 mM EDTA. The mixture was incubated overnight in the dark at 4 °C. For IA and FM co-labeling, an equimolar amount of label (1 M) was used. The reaction was stopped by adding 10 mM DTT. The non- conjugated label was removed by passing the sample twice over a 5 ml P6DG cartridge (Biorad) , equilibrated in PBS. The level of label incorporation was determined from: [Ac/εiabei] x [MW (kDa) /cprotein (mg/ml)]. All samples were stored in the dark at 4 °C.
Fluorescence measurements
Fluorescence emission and excitation spectra were recorded on a Perkin Elmer LS-50B. Settings: 2.5 to 6 nm slit width,
120 nm/min scan speed, final average of 3 separate spectra.
Background emission and excitation spectra were recorded of the respective filtered dialysis buffers.
Intrinsic Tyr fluorescence measurements . Free L-Tyr (Sigma) was used as a control, diluted in dialysis buffer from a stock solution of 100 mM in 1 M HC1. The refolded
Vp3H6 sample was prepared as described before, spectra were first recorded in the presence of 2 mM MgCl2, 0.1 mM ZnCl2 and then -after a 2 h incubation at RT- in the presence of 5 mM EDTA. The protein concentration of the native sample was determined at 55 μM. In all cases, λexc was 280 nm.
PM fluorescence. PM-β-ME was used as a control: a stock solution of PM (5 mM) was reacted with a lOx molar excess of β-mercaptoethanol (β-ME) . This was first diluted 1:100 in MeOH and then to 1 μM in PBS + 0.1 EDTA. MBP-vp3 -PM was also diluted to 1 μM in the same buffer. For time course measurements, MBP-vp3 -PM was diluted to 10 μM (0.6 mg/ml) and incubated in the dark at 4 °C.
To compensate for concentration changes due to protein precipitation, all spectra were normalized to the 377 nm fluorescence emission peak, which was not affected by monomer/excimer formation. For PM fluorescence, the λexc was 341 nm. For Trp-PM FRET, λexc was 280 nm.
IA/FM FRET. For FRET measurements, MBP-vp3 -FM was mixed with MBP-vp3 -IA at a 1:10 label ratio, after which the total protein concentration was adjusted to 10 μM (0.6 mg/ml) . The mixture was then incubated in the dark at 30 °C. After 1, 3, 6 and 24 h, samples were filtered (0.22 μM) and diluted to 1 μM, after which fluorescence spectra were recorded (λexc = 338 n ) . To compensate for protein precipitation, the FRET was expressed as the ratio between the IA emission (485 nm) and the FM emission (518 nm) , denoted as F5ι8/F485.
In order to determine whether the architecture of MBP-vp3 homoglobules is either static or dynamic, a method based on fluorescence resonance energy transfer (FRET), for studying subunit exchange between homoglobules was developed. FRET originates from the electronic interaction between a fluorescent donor probe and a fluorescent or non-fluorescent acceptor. The excited state of the donor can decay by transferring its excitation energy to the acceptor probe. Usually, the effective range of FRET is between 10 and 100 A (Wu and Brand, 1994) . The distance-dependency of FRET is summarised in the Fδrster radius (R0) , which is defined as the distance at which energy tranfer between a specific donor/acceptor pair is 50% effective. Any useful FRET-based approach to monomer exchange in MBP-vp3 requires site-specific labeling of either the MBP or Apoptin moiety. Since Apoptin has four Cys residues and MBP has none, the Apoptin moiety can -in principal- be labeled selectively.
The solvent exposure of protein sulphydryl groups can be quantitated by reaction with DTNB (Riddles et al . , 1983). Under native conditions, the DTNB-reactivity of freshly prepared MBP-vp3 is around 65% of one molar equivalent of Cys-HCl. In comparison, purified MBP alone showed no reactivity at all with DTNB. This demonstrates that not more than one Cys residue in Apoptin is solvent exposed. Since C30, C47 and C49 are likely to be buried due their localization in the N-terminus of Apoptin (see further) and when the presence of the Apoptin degradation products is taken into account, it can be argued that the single exposed Cys residue in Apoptin is C90. Therefore, Cys-labeling of MBP-Apoptin is thought to occur at a specific location on the protein surface.
MBP-vp3was labeled with 1,5-IADEANS (IA) and fluorescein-5- maleimide (FM) . The IA label can act as a FRET donor to FM with an R0 of 46 A, which compares well with the probable dimensions of the Apoptin portion of the MBP-vp3 particle (Garzon-Rodriques et al . , 1997). When MBP-vp3 -IA is mixed with MBP-vp3 -FM, any exchange of subunits between homoglobules is expected to result in the formation of a new effective FRET contact between an IA and FM label.
Therefore, an increase in the ratio between FM and IA fluorescence (F5ι8/F85) can be interpreted as being the result of subunit exchange. However, prolonged incubation of MBP-vp3 at 30°C can lead to the formation of aspecific Apoptin aggregates which are prevented from precipitating by the solubilizing propensity of MBP. This can introduce an error in IA/FM FRET measurements. In order to evaluate the relevance of this effect, MBP-vp3 was first labeled with N- (l-pyrene)maleimide (PM) . A well-documented feature of pyrene fluorescence is the formation of so-called Λexcimer' pairs (Lehrer, 1997; Sahoo et al . , 2000). Pyrene excimer fluorescence is characterised by a broad emission peak around 465 nm and occurs when an excited pyrene comes into close proximity with a ground-state pyrene (<10 A) . When the pyrene-labeled Apoptin domain in MBP-vp3 -PM undergoes progressive aspecific aggregation, this is likely to give rise to an increase in excimer fluorescence (Panse et al . , 2000) . Therefore, an increase in the monomer/excimer ratio can be regarded as a measure of Apoptin intradomain aggregation. An additional informative property of MBP-vp3 - PM stems from the fact that Trp can act as a FRET donor for PM (Johnson et al . , 2001). Since MBP contains eight Trp residues and Apoptin contains none, any aspecific aggregation of Apoptin with MBP is expected to result in a rise in Trp/PM FRET. In proteins, the R0 of the Trp/PM donor/acceptor pair is between 20 and 30 A (Wu and Brand, 1994) . Since the Trp residues in MBP are evenly distributed throughout the molecule, any increase in Trp/PM FRET is a clear indication of interdomain aggregation (Quiocho et al . , 1997).
In the pyrene emission spectrum of fresh MBP-vp3 -PM, there is a significant amount of excimer fluorescence, when compared to PM-ME (PM-β-mercaptoethanol) . The average PM incorporation level in MBP-vp3 is 30%, which shows that -on average- a fraction of the exposed Cys sites are less than 10 A apart. The ratio of monomer/excimer fluorescence is essentially unchanged after 6 h at 30°C. After 24 h at 30 °C, the excimer fluorescence is increased by about 25% (figure 13B) . The initial Trp-PM FRET in MBP-vp3 -PM is very small and after 24 h at 30°C, the changes in Trp/PM FRET are negligible. Both lines of evidence indicate that in MBP-vp3, aspecific aggregation only begins to be a detectable event after more than 6 h of incubation at 30°C. Moreover, aggregation takes place only within the Apoptin domain. Also, any increase in F5ι8/F485 can only be ascribed to subunit exchange exclusively up to 6 h of incubation. The incorporation levels for MBP-vp3 -IA and -FM were 150 and 75%, respectively. Since the fusion protein contains an amount of degradation products that lack C90, 75% incorporation is likely to represent near complete Cys- labeling by FM. A fraction of the IA label reacts with a Lys residue on MBP, which was deduced from a strong Trp/IA FRET in MBP-vp3 -IA (data not shown) . The R0 of the Trp/IA couple is 22 A, which is comparable to that of Trp/PM (Wu and Brand, 1994) . So, the Trp/IA FRET can only be caused by the IA label located on MBP and not on Apoptin. Since the distance dependence of FRET is in the order of r~6, the contribution of MBP-IA to Apoptin-IA/FM FRET is thought to be minimal. Indeed, co-labeled MBP-vp3 -IA/FM has no significant Trp/IA—»FM FRET, although that was expected in view of the intensity of IA fluorescence. The fact that the IA label is not entirely specific for the Apoptin moiety means that a reliable estimate of the IA/FM distance is not possible, since a fraction of donor label does not effectively participate in FRET. Besides, the observation that MBP-vp3 -PM displays clear excimer fluorescence shows that the Cys-labeling sites are well within the R0 of IA/FM. In all, the heterogeneity of IA-labeling does not affect the relationship between F518/F485 and subunit exchange in MBP- vp3. Furthermore, after 24 h incubation at 30°C, the Rh of labeled MBP-Apoptin complex was indistinguishable from unlabeled and unincubated MBP-vp3, as was shown by DLS. It was also established that MBP-vp3 -IA and MBP-vp3 -FM are equally sensitive to denaturation at 30°C. MBP-vp3 -IA was combined with MBP-vp3 -FM (10:1 label content) and incubated at 30°C in PBS, in the presence of either 0.5 mM EDTA, 0.1 mM ZnCl2, 2.5 mM MgCl2. There is a clear increase in F5ι8/F485 over the course of 6 h at 30 °C, in PBS/EDTA. This demonstrates that MBP-vp3 homoglobules are capable of exchanging either monomers or oligomeric subunits under physiological conditions. The presence of either Mg2+ or Zn2+ does little to change the exchange rate. However, the presence of EDTA greatly improves the thermal stability of the fusion protein. To test for the influence of detergents on the exchange rate, labeled MBP-vp3 was assayed in PBS, 0.5 mM EDTA with either 1% CHAPSO or 1% Triton X-100. The increase in F518/F485 in PBS/EDTA + CHAPSO is only around 30% faster than it is in
PBS/EDTA. Clearly, the presence of detergents has relatively little effect on the dynamics of the MBP-Apoptin homoglobule. Nevertheless, CHAPSO is clearly favored over Triton X-100. At the concentration used here, the tendency of Triton X-100 to form micelles probably outweighs interaction with MBP-vp3, more so than in CHAPSO.
Overall, these results indicate that the multimeric MBP-vp3 or Vp3H6 complexes are dynamic complexes. 3.4 Binding to ss and ds DNA
DNA-binding
DNA-affinity chromatography. MBP-Apoptin was applied to a ss or dsDNA-cellulose column (1.5 x 2 cm; Pharmacia), equilibrated in 20 mM HEPES pH 7.4, 50 mM NaCl, 1 mM EDTA (or 0.1 mM ZnS04 or 2.5 mM MgCl2) . The column was then eluted with a NaCl step gradient (5 CV's per step), 50 to 2000 mM NaCl. λDNA fragment elution . λDNA (cI857, strain 7) (Roche) was digested with Rsal (0.3 μg unit-1, 2 h 30 minutes) (NEB) , after which Rsal was deactivated by heating at 65°C for 20 minutes. The digest (10 mM Bis-TrisHCl pH 7.0, 10 mM MgCl2) was mixed directly with MBP-vp3 (50 μg DNA/mg protein) and incubated on ice for 15 minutes. The MBP-vp3 -DNA complex was loaded on an amylose column (0.5 x 1.0 cm), which was eluted with a NaCl step gradient (5 CV's per step), 50 to 2000 mM NaCl. Fractions were desalted using Qiaquick spin filters (Qiagen) and separated on 1.2% agarose .
When Apoptin is expressed in situ in transformed cells or introduced via microinjection, Apoptin forms intranuclear aggregates. Noteborn (et al . , 1994) has suggested that
Apoptin associates with heterochromatin in apoptotic cells. We evaluated the DNA-binding of MBP-Apoptin in vitro by means of ss and dsDNA-affinity chromatography. At pH 7.4, 50 mM NaCl, all MBP-Apoptin binds to both ss and dsDNA adsorbed to cellulose with a binding capacity of 1.5 and 2.2 (mg protein/mg of DNA) respectively. The elution profiles of MBP-vp3 on ss and dsDNA are essentialy the same. In both cases, MBP-vp3 elutes as a heterogeneous species with an optimum around 200 mM NaCl. Supplementing the buffer with either Mg2+ or Zn2+ does not have any effect on the binding capacity and elution profile of MBP-vp3, nor does it induce specificity for either ss or dsDNA. Next, we devised a method for detecting any sequence specificity in the DNA-binding properties of MBP-vp3. λDNA was digested with .Rsal, to yield a set of blunt-ended DNA fragments ranging in size between 0.1 and 2.5 kb . If MBP-vp3 displays sequence specificity, it is likely to bind certain fragments with a relatively high affinity. MBP-vp3 was incubated with the λDNA/Rsal fragment collection, bound to amylose and eluted with a NaCl gradient. Subsequently, the fractions were separated on agarose gel. Clearly, there is no obvious specificity for one or more fragments. MBP-vp3 displays a higher for large fragments, but this is expected to stem from a cooperatibe binding effect. Therefore, we conclude that MBP-vp3 is a general DNA-binding protein without significant sequence-specificity. Furthermore, both the MBP-vp3 /DNA and DNA/ MBP-vp3 elution profiles show that a fraction of the MBP-vp3 /DNA complexes are resistant to treatment with 2 M NaCl. Apparently, MBP-Apoptin is able to form particularly heterogeneous complexes with DNA, some of which are effectively irreversible.
4. Biological activity of MBP-vp3 protein and his-tagged apoptin protein.
4.1 Tumor-specific induction of apoptosis by proteinaceous apoptin (vp3) substances To assay the ability of apoptin protein to specifically induce apoptosis in tumor cells a micro-injection system was set up. Human osteosarcoma-derived Saos-2 tumor cells, Jurkat T cells and normal human diploid VH10 primary cells were cultured on glass cover slips. Jurkat T cells are suspension cells, so they were cultured on glass surfaces pre-coated with the lectin wheat germ agglutinin to cause adherence 1 day prior to microinjection. In addition, we obtained human normal primary mesenchymal stem cells and human normal primary hepatocytes from BioWhittaker, which were cultured no more than 1-3 passages in medium and under conditions recommended by the manufacturer. For the cells from BioWhittaker, we included the following control: microinjection into the nucleus of a DNA plasmid, CMV-FADD, which is a positive control for apoptosis induction. The cells were micro-injected in the cytoplasm with protein MBP- vp3, Vp3H6, or MBP alone at 3 mg/ml using an Eppendorf micro-injector with the injection-pressure condition of 0.5 psi, or in the nucleus in the case of CMV-FADD DNA (50 ng/ul) . The cells were co- injected with Dextran-Rhodamine (MW: 70 kDa; Molecular Probes, Leiden, The Netherlands) to be able to later identify injected cells. The cells were incubated at 37°C after injection until the cells were fixed with formaldehyde-methanol-acetone. Presence of MBP-apoptin or his-tagged apoptin protein was determined with immuno- histochemistry with antibodies directed against MBP (monoclonal mouse anti-MBP-clone R29; Zymed Laboratories,
Inc. and polydonal rabbit anti-MBP- clone C18/sc-808; Santa Cruz Biotechnology, Inc.) and/or against apoptin (vp3 ; anti- VP3C) . Presence of FADD was determined with a monoclonal FADD antibody (Transduction Laboratories) . Apoptosis was counted as abnormal nuclear morphology after counter- staining with DAPI and examination with an immunofluorescence microscope (Telford et al . , 1992).
The results show that both MBP-vp3 and Vp3H6 protein were able to induce rapid apoptosis in human tumor cells (within 3-6 hours, but did not induce apoptosis in normal human cells. The MBP control protein did not induce apoptosis in any of the cell lines under these conditions. In contrast, FADD induced rapid apoptosis in normal cells, confirming that the cells were at least competent to undergo apoptosis, and highlighting the fact that they were strongly resistant to proteinaceous apoptin-induced apoptosis. The N3 L/l u> ø
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4.2 Apoptosis induction in the absence of de novo protein production.
The following experiment shows an example of an application of the proteinaceous apoptin substance for studying the tumor-specific apoptosis pathway, which can be induced by apoptin. Saos-2 cells were incubated with transcription inhibitors cycloheximide (20 ug/ml or actinomycin D (10 ug/ml) or translation inhibitors puromycin (10 ug/ml) and emetin (10 ug/ml), or without these inhibitors. The transcription- as well as the translation-inhibitors were obtained from the company Sigma, USA. The inhibition efficacy of the various transcription- and/or translation- inhibitors was proven to be accurate in Saos-2 cells by micro-injecting Saos-2 cells with a plasmid expressing the Green-fluorescence protein (GFP) . In all cases no GFP protein could be produced by the Saos-2 cells when they were treated with any of the 4 translation- or transcription- inhibitors. In contrast, the Saos-2 cells micro-injected with the GFP-encoding plasmid produced the GFP in clearly detectable amounts as visualized by direct fluorescence techniques .
For each type of inhibitor, 2 dishes with Saos-2 cells were used. As positive control, Saos-2 cells without inhibitors were also grown. All cell cultures were micro- injected with MBP-vp3 protein (produced and purified as described above) or MBP protein. In all cases when MBP-vp3 was micro-injected the majority of the Saos-2 cells underwent apoptosis 6 hours after micro-injection, whereas cells treated with one of the inhibitors did not undergo apoptosis, even at later time points. Independent of the presence of inhibitors, cells injected with MBP protein did not go into apoptosis.
These results indicate that apoptin-induced apoptosis is not inhibited by the transcription-inhibitors cycloheximide or actinomycin D and not by translation- > J N> o O LΠ o
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TAT, tumor-specific (single-chain) antibodies or EGF as a delivery means .
4.5 Apoptosis induction of the his-tagged NLS-apoptin fragment containing amino acids 1-69.
In the following experiments, we have examined whether a bacterially produced chimeric protein consisting of the N- terminal half of apoptin (amino acids 1-69) with at its N- terminus the nuclear localization signal (amino acids N- terminal-Proline-Proline-Lysine-Lysine-Lysine-Arginine-
Lysine-Valine-C-terminal) of SV40 large T antigen and at its C-terminus a histidine tag, also reveals apoptotic activity in human tumor cells.
The used expression plasmid encoding the apoptin protein fragment NLS-vp3/l-69-H6 is shown in Figure 4b. The proteinaceous substance NLS-vp3/l-69-H6 was purified and produced as has been described for the above mentioned histidine-tagged apoptin (vp3) proteins.
Human Saos-2 cells were micro-injected with NLS-vp3/l- 69-H6 protein as described for the above-mentioned micro- injected proteinaceous substances. As negative control, the human tumor cells were micro-injected with the non-apoptotic protein MBP and as positive control MBP-vp3 protein was micro-injected. Within 6 hours after micro-injection, the majority of the Saos-2 cells containing both MBP-vp3 and
NLS-vp3/l-69-H6 protein became apoptotic, whereas the cells containing MBP protein did not . Comparable results were obtained with NLS-VP3/1-80-H6.
Therefore, we conclude that proteinaceous substances containing the complete apoptin protein sequence or a specific apoptin protein fragment can induce apoptosis in human tumor cells.
4.6. Biological activity of MBP-VP3 -66-121 in tumor and normal cells . pMalTBVp3dN66 , MBP fusion of C-terminal 55 residues of
Apoptin (MBP-Apoptin (66-121) . The C-terminal domain of
Apoptin (ORF bp 196-363) was cloned in pMalTB at Ba HI and
Sail . The protein was expressed and purified as described for the MBP-vp3 protein. The protein is called MBP-vp3-66-
121.
In order to determine whether additional tumor-specific fragments of Apoptin could be generated, we made and tested MBP-vp3 -66-121 in microinjection/im unofluorescence experiments in Saos-2 tumor cells and low-passage CD31- human normal dermal fibroblast cells exactly as described previously. MBP-vp3, as a control, induced tumor-specific nuclear localization and death in Saos-2 but not CD31- fibroblasts. Interestingly, the MBP-vp3 -66-121 protein behaved very similarly to the full-length protein both in function as well as in specificity.
These results indicate that a C-terminal fragment of Apoptin behaves as a functional fragment of the full length Apoptin: the fragment is capable of killing tumor cells but does not induce apoptosis in normal cells .
These results suggest that protein fragments smaller than full-length Apoptin, and even peptides thereof, can be generated and used to achieve tumor-specific killing with no side effects in normal cells.
5. TAT-apoptin
5.1 Transduction using denatured and refolded apoptin protein
5. 1. 1 Description of transductxon-domain-apoptin construct A DNA was constructed that encodes in frame for respectively a 6xHis-tag, a TAT-transduction domain, an HA-tag, followed by the coding sequence for apoptin and a stop codon. This construct was cloned in frame in a petl6b (Novagen) expression vector, which encodes for a lOx His-tag followed by the insert. The resulting construct is referred to as pETXNvp3, and the resulting protein will be referred to as XNvp3. See for the DNA sequence, figure 7 and for the protein sequence, figure 8.
5. 1. 2 Description of expression and purification pETXNvp3 plasmid DNA was transformed into BL21 (DE3)pLysS bacteria (Novagen) on LB plates containing the appropriate antibiotics, and an antibiotic resistant colony was grown to ODgoo of 0.6 in 1 liter LB plus antibiotics in a shaker flask. IPTG was added to 1 mM, and the cells were grown for an additional 3 hrs .
A bacterial pellet was obtained by centrifugation and sonicated on ice in 30 ml lysis buffer containing 150 mM NaCl and 0.5% Triton. After centrifugation the pellet was again sonicated as above, and inclusion bodies were centrifuged as a pellet. Expression of XNvp3 was confirmed by SDS-PAGE followed by Coomassie-blue staining and Western- blot analysis with 111.3, a vp3-protein specific monoclonal antibody. The inclusion bodies were re-suspended in Nickel
Loading Buffer (NLB;8M Urea, IM NaCl, 50mM Phosphate buffer pH 7.5, 40mM imidazole) and loaded onto a 4 ml Ni-NTA column (Qiagen) equilibrated in the same buffer. The column was washed with 30 ml NLB, and washed with 10 ml MonoS Loading Buffer (MSLB;8M Urea, 250mM NaCl, 50mM phosphatebuffer pH 7.5) supplemented with 40mM imidazole. The bound proteins were eluted with MSLB supplemented with 250mM imidazole. The protein containing fractions were pooled and subsequently loaded on a 5 ml Mono-S chromatography column (Pharmacia) and washed with 2 column volumes MSLB. Refolding and elution was performed by washing the Mono-S column with 2M NaCl, 50mM phosphate buffer pH 7.5. The protein containing fractions were pooled and the buffer was exchanged on a PD10 column (Pharmacia) against DMEM or PBS. The protein was aliquoted and frozen at -80°C until further use.
5. 1. 3 Description of in-vitro transduction and specific killing of tumor cells
Jntracellular localization in tumor cells and normal cells . To show that XNvp3 was able to penetrate into cells, and to assess its intracellular localization, the following experiment was performed. XNvp3 protein was added to cultured Saos-2 cells and VH10 cells at 50nM concentration in medium. After one hour the cells were fixed with 80% acetone, and the intracellular presence of XNvp3 protein was tested using antibodies 12CA5 (directed against the HA-tag) or 111.3 antibodies (directed against vp3 protein) .
In both tumor and normal cells XNvp3 was located in the nucleus, as seen with confocal laser microscopy. This shows that XNvp3 can transduce into cells.
Binding to Apoptin Associated Proteins in COS cells . Next, we examined whether XNvp3 protein can bind to apoptin associated proteins as has been reported for apoptin protein (Noteborn and Danen-van Oorschot, 1999) . To that end, the following experiment was performed. XNvp3 protein was incubated with COS cells that had been transfected 48 hours earlier with expression vectors encoding myc-tagged AAP1, which is one of the apoptin-associating proteins, or LacZ . Subsequently, the cells were lysed and an immuno- precipitation (IP) was performed with 12CA5. As a negative control, COS cells transfected with the same expression vectors but not incubated with XNvp3 were treated the same way. As a positive control, COS cells transfected with the same expression vectors together with an expression vector for HA-tagged vp3 were treated the same way. The IP's were analyzed for the presence of the myc-tagged proteins by SDS- PAGE and Western blotting with 9E10 (against the myc-tag) .
The results show that XNvp3 can bind to an intracellular AAP in a similar fashion as apoptin (vp3) encoded by a transfected plasmid. Therefore, one can conclude that apoptin proteinaceous substances reveal essential biological activities of apoptin i.e. binding to its cellular counterparts.
Induction of apoptosis in tumor cells versus normal cells To show that XNvp3 can induce apoptosis in tumor cells, Saos-2 and VHSV-40 cells were cultured in the presence of 10 or 50nM XNvp3. To correct for possible degradation of XNvp3 , the medium was replaced twice a day with fresh medium containing freshly thawed XNvp3. After four days the cells were fixed and the intracellular presence of XNvp3 and apoptosis were assessed with immuno-histochemistry as described before (Danen-Van Oorschot et al . , 1997). The results show that XNvp3 can induce apoptosis in these cells at concentrations of around 10 to 50 nM. A similar experiment was performed with non-transformed VH10 cells to establish the specificity of XNvp3. VHIO cells were cultured in medium containing 10 or 50 nM XNvp3, but also in a five time higher concentration at 250 nM. After four days, no significant apoptosis could be detected in the VH10 cells.
The same experiment was also performed with non-transformed keratinocytes and with primary mouse lymfocytes, and no apoptosis above background (medium alone) could be detected here either.
Prevention of tumor cell growth in vi tro
To extend the observation that XNvp3 can cause apoptosis specifically in tumor cells, Saos-2 cells, U2-OS cells, and VH10 cells were split 1:10 and cultured for two weeks in the presence of 50nM XNvp3 (replaced twice daily as described above) or in normal medium. The cells were then fixed with Methanol/acetic acid, and stained with Coomassie Blue. Although the cells in the control medium had all grown to confluency, the Saos-2 and U20S cells treated with XNvp3 had all disappeared from the dish, indicating that they had undergone apoptosis . The VH10 cells treated with XNvp3 had grown to the same density as control treated VH10 , showing that XNvp3 does not inhibit growth of non-transformed cells.
5.2 Transduction of non-denatured apoptin protein using cross-linked transduction domain peptides
5.2. 1 Conjugation of TAT-peptide to MBP-vp3
MBPvp3 was purified as described for the above-mentioned micro-injection experiments. The protein was then chemically conjugated to synthetic TAT-peptide (aa 37-72, CFITKALGISYGRKKRRQRRPPQGSQTHQVSLS Q) as described by Fawell et al. (1994) . In short, the purified MBP-vp3 protein was activated with iodoacetamide, and desalted and concentrated. o < > o
Figure imgf000039_0001
5.2. 3. Binding to Apoptin Associated Proteins in COS cells.
To show that MBP-vp3-TAT can bind to apoptin associated Proteins as well as transfected vp3 in cells, the following experiment was performed. MBP-vp3-TAT was incubated with COS cells that had been transfected 48 hours earlier with an expression vector encoding myc-tagged AAP-1 or LacZ. After 16 hours, the cells were lysed and anti MBP-vp3-TAT i munoprecipitation (IP) was performed with anti-MBP antibodies. As a negative control, COS cells transfected with the same expression vectors but not incubated with MBP- vp3-TAT were treated the same way. As a positive control, COS cells transfected with the same expression vectors together with an expression vector for HA-tagged vp3 were lysed and an IP was performed with anti-HA antibodies. The IP's were analyzed for the presence of the myc-tagged proteins by SDS-PAGE and Western blotting with 9E10 (against the myc-tag) . The results show that MBP-vp3-TAT can bind to intracellular AAP's proving again that the apoptin proteinaceous substance contains the biological activity as seen for apoptin produced by transcription and translation of its DNA.
5.2. 4 . Induction of apoptosis in tumor cells versus normal cells To show that MBP-yp3-TAT can induce apoptosis in tumor cells, Saos-2 and VHSV-40 cells were cultured in the presence of 1 or 5 microgram/ml MBP-vp3-TAT. To correct for possible degradation of MBP-vp3-TAT, the medium was replaced twice a day with fresh medium containing freshly thawed MBP- vp3-TAT. After four days the cells were fixed and the intracellular presence of MBP-vp3-TAT and apoptosis were assessed with immunohistochemistry as described before (Danen-Van Oorschot, 1997) . The results show that MBP-vp3- TAT can induce apoptosis in these cells at concentrations of around 1 or 5 microgram/ml . A similar experiment was performed with non-transformed VH10 cells to establish the specificity of MBP-vp3-TAT. VH10 cells were cultured in medium containing 1 or 5 microgram/ml MBP-vp3-TAT, but also in a five time higher concentration at 25 microgram/ml. After four days, no significant apoptosis could be detected in the VH10 cells.
The same experiment was also performed with non- transformed keratinocytes and with primary mouse lymphocytes, and no apoptosis above background (medium alone) could be detected here either.
5.2.5. Prevention of tumor cell growth in vitro
To extend the observation that MBP-vp3-TAT can cause apoptosis specifically in tumor cells, Saos-2 cells, U2-0S cells, and VH10 cells were split 1:10 and cultured for two weeks in the presence of 5 microgram/ml MBP-vp3-TAT (replaced twice daily as described above) or in normal medium. The cells were then fixed with Methanol/acetic acid, and stained with Coomassie Blue'. Although the cells in the control medium had all grown to confluency, the Saos-2 and U2-OS cells treated with MBP-vp3-TAT had all disappeared from the dish, indicating that they had undergone apoptosis . The VH10 cells treated with MBP-vp3-TAT had grown to the same density as control treated VH10, showing that MBP-vp3- TAT does not inhibit growth of non-transformed cells.
6.1 Delivery of MBP-apoptin by chemically coupling to anti- prostate-specific membrane antibodies.
Prostate-specific membrane antigen (PSMA) is a membrane-bound glycoprotein that is highly restricted to prostatic epithelial cells. PSMA is increased in association with prostatic cancer, particularly in hormone refractory disease. For instance, the LNCaP prostate cancer cell line has an estimated 180,000 molecules of PSMA per cell on its surface. Devitt et al . (2000) developed the J591 monoclonal, which internalises the prostate cancer cell upon binding to to o o O
Figure imgf000042_0001
Figure imgf000042_0002
for apoptin as well as for MBP-apoptin protein products. With other words, delivery to a cell via surface antigens of a protein product containing apoptin will result in induction of tumor-specific apoptosis.
Similar results were obtained with chemically coupling of single-chain Fv antibodies directed against HER2/neu (scFvHER; Wang et al . , 2001)). HER2/neu has been implicated in the oncogenesis of human prostate cancer. Clinical studies have suggested that over expression of HER2 is one of the indicators of poor prognosis in prostate cancer treatment. The above-described LNCaP cells express besides PSMA also high levels of HER2 protein. Therefore, we incubated LNCaP cells with MBP-apoptin coupled chemically with scFvHER. Exposure of LNCaP cells to scFvHER-MBP-apoptin caused remarkable cell death. PC3M cells, lacking HER2 protein, did not undergo apoptosis upon treatment with scFvHER-MBP-apoptin protein. Addition of the chemically coupled scFvHER/MBP-apoptin products to the medium of primary human prostate cells also did not result in induction of apoptosis, which shows the safety of the approach of delivery of apoptin protein chemically coupled to a scFv molecule, which can deliver apoptin into the cell.
In conclusion, the data obtained with recombinant MBP- apoptin coupled to specific (single-chain) antibodies confirm the observation that coupling of a fluorescein moiety to (MBP) -apoptin does not negatively influence the tumor-specific activity of apoptin. Therefore, specific delivery of biological active (tumor-specific induction of apoptosis) (MBP-) apoptin protein to human tumor cells via coupling to specific antibody protein molecules forms the base for a novel anti-tumor therapy. t t ,-_. o o
Figure imgf000044_0001
obtained in a soluble and biologically active form without loss of apoptin' s apoptosis activity and without the loss of the affinity of scFv components to its specific antigen.
Description of the figures
Figure 1 shows the map of the MBP-vp3 fusion product inclusive the Asn-stretch and the thrombin cleavage site.
Figure 2 shows the partial DNA sequence of MBP-vp3. Underlined are the ATG-initiation codon of vp3 (apoptin) as well as the TAA-stop codon of vp3 (apoptin) . The upstream sequences of the ATG-codon of vp3 are from the MBP construct showing that the apoptin sequence is in frame with the MBP sequence .
Figure 3 shows the protein sequence of MBP-vp3.
Figure 4a shows the map of vp3-H6, which is the complete apoptin (vp3) amino acid sequence containing 6 histidine residues at the C-terminal end.
Figure 4b shows the map of NLS-vp3/l-69-H6 , which is made of the SV40 LT Nuclear Localization Signal (NLS) , apoptin (vp3) amino-acid sequences 1-69 (1-69) and a C-terminal tag of 6 histidine residues.
Figure 5 shows the DNA sequence of plasmid encoding the vp3H6 construct . The Ndel and Notl sites are underlined in the shown DNA sequence. The vp3- and histidine-sequences are cloned in the Ndel and Notl sites of plasmid pET22b.
Figure 6 shows the protein sequence of the vp3H6 protein product .
Figure 7 shows the partial DNA sequence of pET-XNvp3 starting at the ATG of its Ncol site till the stop codon of apoptin (vp3) . Figure 8 shows the amino acid sequence of the XNvp3 protein product .
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Claims

I. Apoptin or functional equivalent or functional fragment thereof provided with a means to deliver apoptin to a cell.
2. Apoptin according to claim 1 capable of providing tumor-specific apoptosis.
3. Apoptin according to claim 1 or 2 wherein said means comprises a protein transduction system.
4. Apoptin according to anyone of claims 1 to 3 wherein said means comprises the HIV TAT protein.
5. Apoptin according to anyone of claims 1 to 4 further provided with a fusion protein or tag.
6. Apoptin according to anyone of claims 1 to 5 which is non-denatured.
7. A nucleic acid encoding apoptin according to anyone of claims 1 to 6.
8. A vector comprising a nucleic acid according to claim 7.
9. A host cell comprising a nucleic acid according to claim 7 or a vector according to claim 8.
10. A host cell according to claim 9 which is a prokaryotic cell such as E.coli.
II . Use of a proteinaceous substance comprising apoptin or functional equivalent or functional fragment thereof for induction of tumor-specific apoptosis.
12. Use of a proteinaceous substance according to claim 11 wherein said substance further comprises a means to deliver said apoptin to a cell .
13. Use of a proteinaceous substance according to claim 12 wherein said means comprises a protein transduction system.
14. Use of a proteinaceous substance according to claim 12 or 13 wherein said means comprises the HIV TAT protein.
15. Use of a proteinaceous substance according to anyone of claims 11 to 14 further comprising a fusion protein or tag.
16. Use of a proteinaceous substance according to anyone of claims 11 to 15 wherein said proteinaceous substance is non- denatured .
17. Use according to anyone of claims 11 to 16 wherein said apoptosis is p53 -independent.
18. A pharmaceutical composition comprising a proteinaceous substance comprising apoptin or functional equivalent or functional fragment thereof capable of providing tumor- specific apoptosis.
19. A pharmaceutical composition according to claim 18 wherein said proteinaceous substance further comprises a means to deliver said apoptin to a cell.
20. A pharmaceutical composition according to claim 19 wherein said means comprises a protein transduction system.
21. A pharmaceutical composition according to anyone of claims 19 or 20 wherein said means comprises the HIV TAT protein.
22. A pharmaceutical composition according to anyone of claims 18 to 21 wherein said proteinaceous substance further comprises a fusion protein or tag.
23. A pharmaceutical composition according to anyone of claims 18 to 22 wherein said proteinaceous substance is non- denatured .
24. A pharmaceutical composition according to anyone of claims 18 to 23 wherein said apoptosis is p53 -independent .
25. Use of a proteinaceous substance comprising apoptin or functional equivalent or functional fragment thereof capable of providing apoptosis for the preparation of a pharmaceutical composition for the treatment of a disease where enhanced cell proliferation or decreased cell death is observed.
26. Use according to claim 25 wherein said proteinaceous substance further comprises a means to deliver said apoptin to a cell .
27. Use according to claim 26 wherein said means comprises a protein transduction system.
28. Use according to claim 26 or 27 wherein said means comprises the HIV TAT protein.
29. Use according to anyone of claims 25 to 28 wherein said proteinaceous substance further comprises a fusion protein or tag.
30. Use according to anyone of claims 25 to 29 wherein said proteinaceous substance is non-denatured.
31. Use according to anyone of claims 25 to 30 wherein said apoptosis is p53-independent .
32. Use according to anyone of claims 25 to 31 wherein said disease comprises cancer or auto-immune disease.
33. A method for detecting the presence of cancer cells or cells that are cancer prone in a sample of cells comprising providing cells in said sample with a proteinaceous substance comprising apoptin or functional equivalent or functional fragment thereof and determining the percentage of apoptosis of cells in said sample.
34. A method for detecting the presence of cancer cells or cells that are cancer prone in a sample of cells comprising providing cells in said sample with a proteinaceous substance comprising apoptin or functional equivalent or functional fragment thereof and determining the intracellular localization of the proteinaceous substance in cells in said sample.
35. A method according to claim 33 or 34 wherein said proteinaceous substance further comprises a means to deliver said apoptin to a cell.
36. A method according to claim 35 wherein said means comprises a protein transduction system.
37. A method according to claim 35 or 36 wherein said means comprises the HIV TAT protein.
38. A method according to anyone of claims 33 to 37wherein said proteinaceous substance further comprises a fusion protein or a tag.
39. A method according to anyone of claims 33 to 38 wherein said proteinaceous substance is non-denatured.
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