CN112877454A - Transgenic maize event LP007-3 and methods of detecting same - Google Patents

Transgenic maize event LP007-3 and methods of detecting same Download PDF

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CN112877454A
CN112877454A CN202110112170.9A CN202110112170A CN112877454A CN 112877454 A CN112877454 A CN 112877454A CN 202110112170 A CN202110112170 A CN 202110112170A CN 112877454 A CN112877454 A CN 112877454A
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吕玉平
刘枫
孙宇
赵丽媛
李涛
张原�
贺志豪
李斌
李琪
卢娟
易金麒
韩雨颖
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Abstract

The present invention provides a nucleic acid sequence comprising one or more selected from the group consisting of sequences SEQ ID NOs 1-7 and complements thereof, derived from a plant, seed or cell comprising maize event LP007-3, a representative sample of seed comprising said event having been deposited under deposit number CCTCC NO: P202016. Transgenic corn event LP007-3 of the present invention is resistant to feeding damage by lepidopteran pests and is resistant to the phytotoxic effects of glyphosate-containing agricultural herbicides. The maize plant with dual characters has the following advantages: avoiding economic losses due to lepidopteran pests; the glyphosate-containing agricultural herbicide may be applied to a corn crop; the corn yield is not reduced; enhance breeding efficiency and can use molecular markers to track the transgene insert in breeding populations and progeny thereof. Meanwhile, the detection method provided by the invention can quickly, accurately and stably identify the existence of the plant material derived from the transgenic corn event LP 007-3.

Description

Transgenic maize event LP007-3 and methods of detecting same
Technical Field
The invention belongs to the technical field of molecular biology, and relates to a transgenic plant and a detection method of a product thereof, in particular to a transgenic corn event LP007-3 which is resistant to insects and tolerant to glyphosate herbicide application, a nucleic acid sequence for detecting the transgenic corn LP007-3 and a method thereof.
Background
Corn (Zea mays L.) is a major food crop in many parts of the world. Biotechnology has been applied to maize to improve its agronomic traits and quality. Insect resistance is an important agronomic trait in corn production, particularly resistance to lepidopteran insects (e.g., corn borer, cotton bollworm, spodoptera frugiperda, armyworm, etc.). The lepidopteran resistance of corn can be obtained by expressing a lepidopteran resistance gene in a corn plant by a transgenic method. Another agronomic trait of interest is herbicide tolerance, particularly tolerance to glyphosate herbicide. Tolerance to glyphosate herbicide in corn can be achieved by transgenic methods that express a glyphosate herbicide tolerant gene (e.g., epsps) in the corn plant.
It is known that expression of foreign genes in plants is influenced by their chromosomal location, possibly due to chromatin structure (e.g., heterochromatin) or the proximity of transcriptional regulatory elements (e.g., enhancers) to the integration site. For this reason, it is often necessary to screen a large number of events in order to be able to identify a commercializable event (i.e., an event in which the introduced gene of interest is optimally expressed). For example, it has been observed in plants and other organisms that the amount of expression of an introduced gene may vary greatly between events; differences may also exist in the spatial or temporal pattern of expression, such as differences in the relative expression of the transgene between different plant tissues, in that the actual expression pattern may not be consistent with the expected expression pattern of the transcriptional regulatory elements in the introduced gene construct. Thus, it is often necessary to generate hundreds to thousands of different events and to screen those events for a single event with the amount and pattern of transgene expression expected for commercial purposes. Such transformation events have excellent lepidopteran pest (e.g., asian corn borer, spodoptera frugiperda, oriental armyworm, spodoptera frugiperda, cotton bollworm, black cutworm, dichocrocis punctiferalis, etc.) and glyphosate herbicide resistance without affecting corn yield, and can be used to backcross transgenes into other genetic backgrounds by hybridization using conventional breeding methods. The progeny produced by this crossing retain the transgene expression characteristics and trait performance of the original transformants. The strategy mode can ensure reliable gene expression in a plurality of varieties, has stable lepidoptera pest resistance (such as Asian corn borer, Spodoptera frugiperda, Oriental armyworm, Spodoptera frugiperda, cotton bollworm, black cutworm, dichocrocis punctiferalis and the like) and glyphosate herbicide resistance, prevents the varieties from being harmed by main lepidoptera pests, has broad-spectrum weed control capability, and can well adapt to local growth conditions.
It would be beneficial to be able to detect the presence of particular events to determine whether progeny of a sexual cross contain a gene of interest. Furthermore, methods of detecting specific events will also help to comply with relevant regulations, such as that foods derived from recombinant crops need to be officially approved and labeled before being placed on the market. It is possible to detect the presence of a transgene by any well-known polynucleotide detection method, such as Polymerase Chain Reaction (PCR) or DNA hybridization using polynucleotide probes. These detection methods usually focus on commonly used genetic elements such as promoters, terminators, marker genes, and the like. Thus, unless the sequence of chromosomal DNA adjacent to the inserted transgenic DNA ("flanking DNA") is known, this method described above cannot be used to distinguish between different events, particularly those produced with the same DNA construct. Therefore, it is now common to identify specific events of a transgene by PCR using a pair of primers spanning the junction of the inserted transgene and flanking DNA, specifically a first primer comprising the flanking sequence and a second primer comprising the inserted sequence.
Disclosure of Invention
The invention aims to provide a transgenic corn event LP007-3, a nucleic acid sequence for detecting a corn plant LP007-3 event and a detection method thereof, which can accurately and rapidly identify whether a biological sample contains a DNA molecule of the specific transgenic corn event LP 007-3.
To achieve the above object, the present invention provides a nucleic acid sequence comprising one or more selected from the sequences SEQ ID NO 1-7 (i.e., SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 3, SEQ ID NO 4, SEQ ID NO 5, SEQ ID NO 6, SEQ ID NO 7) and complementary sequences thereof. In some embodiments, the nucleic acid sequence is derived from a plant, seed, or cell comprising corn event LP007-3, a representative sample of seed comprising the event having been deposited at the China center for type culture Collection (CCTCC, ACCT: accession number: Wuhan university school, Wuhan university Collection, zip code 430072, Wuhan City area, Wuhan, Hubei, U.S. China, eight avenues 299, Wuhan university school, Japan) under the accession number CCTCC NO: P202016, under the taxonomic nomenclature: corn seed LP007-3, with a preservation date of 2020, 12 months and 6 days. In some embodiments, the nucleic acid sequence is an amplicon diagnostic for the presence of maize event LP 007-3.
In some embodiments of the invention, the invention provides a nucleic acid sequence comprising at least 11 contiguous nucleotides of SEQ ID NO. 3 or the complement thereof, and/or at least 11 contiguous nucleotides of SEQ ID NO. 4 or the complement thereof. In some embodiments, the nucleic acid sequence comprises SEQ ID No. 1 or a complement thereof, and/or SEQ ID No. 2 or a complement thereof. In some embodiments, the nucleic acid sequence comprises SEQ ID No. 3 or a complement thereof, and/or SEQ ID No. 4 or a complement thereof. In some embodiments, the nucleic acid sequence comprises SEQ ID No. 5 or a complement thereof.
The SEQ ID No. 1 or its complement is a 22 nucleotide long sequence located near the insertion junction at the 5 'end of the insertion sequence in transgenic maize event LP007-3, the SEQ ID No. 1 or its complement spans the flanking genomic DNA sequences of the maize insertion site and the DNA sequences at the 5' end of the insertion sequence, and the inclusion of the SEQ ID No. 1 or its complement identifies the presence of transgenic maize event LP 007-3. The SEQ ID No. 2 or its complement is a 22 nucleotide long sequence located near the insertion junction at the 3 'end of the insertion sequence in transgenic maize event LP007-3, the DNA sequence of SEQ ID No. 2 or its complement spanning the 3' end of the insertion sequence and flanking genomic DNA sequences of the maize insertion site, the inclusion of SEQ ID No. 2 or its complement being identifiable as the presence of transgenic maize event LP 007-3.
The nucleic acid sequence provided by the present invention may be at least 11 or more contiguous polynucleotides of any portion of the transgene insert sequence in said SEQ ID NO:3 or the complement thereof (first nucleic acid sequence) or at least 11 or more contiguous polynucleotides of any portion of the 5' flanking maize genomic DNA region in said SEQ ID NO:3 or the complement thereof (second nucleic acid sequence). The nucleic acid sequence may further be homologous or complementary to a portion of said SEQ ID NO. 3 comprising the entire said SEQ ID NO. 1. When the first nucleic acid sequence and the second nucleic acid sequence are used together, these nucleic acid sequences comprise a pair of DNA primers in a DNA amplification method that produces an amplification product. The presence of transgenic maize event LP007-3 or progeny thereof can be diagnosed when the amplification product produced in the DNA amplification method using the DNA primer pair is an amplification product comprising SEQ ID NO: 1. It is well known to those skilled in the art that the first and second nucleic acid sequences need not consist of only DNA, but may also include RNA, a mixture of DNA and RNA, or a combination of DNA, RNA or other nucleotides or analogs thereof that do not serve as templates for one or more polymerases. In addition, the probe or primer of the present invention should be at least about 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 contiguous nucleotides in length, which may be selected from the nucleotides set forth in SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 3, SEQ ID NO 4 and SEQ ID NO 5. When selected from the nucleotides set forth in SEQ ID NO. 3, SEQ ID NO. 4, and SEQ ID NO. 5, the probes and primers may be contiguous nucleotides of at least about 17 to about 50 or more in length. The SEQ ID NO:3 or its complement is a 1560 nucleotide sequence located near the insertion junction at the 5 'end of the insertion sequence in transgenic maize event LP007-3, the SEQ ID NO:3 or its complement consisting of a 1068 nucleotide maize flanking genomic DNA sequence (nucleotides 1-1068 of SEQ ID NO: 3), a 375 nucleotide pLP007 construct DNA sequence (nucleotides 1069-1443 of SEQ ID NO: 3) and a 117 nucleotide 3' end DNA sequence of the Nos terminator (nucleotides 1444-1560 of SEQ ID NO: 3), inclusion of the SEQ ID NO:3 or its complement identifies the presence of transgenic maize event LP 007-3.
The nucleic acid sequence may be at least 11 or more contiguous polynucleotides of any portion of the transgene insert sequence in SEQ ID No. 4 or its complement (third nucleic acid sequence), or at least 11 or more contiguous nucleotides of any portion of the 3' flanking corn genomic DNA region in SEQ ID No. 4 or its complement (fourth nucleic acid sequence). The nucleic acid sequence may further be homologous or complementary to a portion of said SEQ ID NO. 4 comprising the entire said SEQ ID NO. 2. When the third nucleic acid sequence and the fourth nucleic acid sequence are used together, these nucleic acid sequences comprise a pair of DNA primers in a DNA amplification method that produces an amplification product. The presence of transgenic maize event LP007-3 or progeny thereof can be diagnosed when the amplification product produced in the DNA amplification method using the DNA primer pair is an amplification product comprising SEQ ID NO. 2. The SEQ ID NO:4 or its complement is a 1264 nucleotide long sequence located near the insertion junction at the 3' end of the insertion in transgenic maize event LP007-3, the SEQ ID NO:4 or its complement consisting of a 53 nucleotide tNOs (nopaline synthase) transcription terminator sequence (nucleotides 1-53 of SEQ ID NO: 4), a 137 nucleotide pLP007 construct DNA sequence (nucleotides 54-190 of SEQ ID NO: 4), and a 1074 nucleotide genomic DNA sequence flanking the maize integration site (nucleotides 191-1264 of SEQ ID NO: 4), the inclusion of the SEQ ID NO:4 or its complement being identifiable as the presence of transgenic maize event LP 007-3.
5 or its complement is a 18257 nucleotide long sequence characterizing transgenic maize event LP007-3, which specifically comprises the genomic and genetic elements shown in table 1. Inclusion of said SEQ ID No. 5 or the complement thereof identifies the presence of transgenic maize event LP 007-3.
TABLE 1 genomic and genetic elements encompassed by SEQ ID NO 5
Figure BDA0002919315000000041
Figure BDA0002919315000000051
The nucleic acid sequence, or a complement thereof, can be used in a DNA amplification method to produce an amplification product, the detection of which diagnoses the presence of transgenic corn event LP007-3 or progeny thereof in a biological sample; the nucleic acid sequence, or the complement thereof, can be used in a nucleotide detection method to detect the presence of transgenic maize event LP007-3 or progeny thereof in a biological sample.
The invention provides a pair of DNA primers comprising a first primer and a second primer, wherein the first primer and the second primer each comprise a fragment of SEQ ID NO. 5 or a complementary sequence thereof and, when used in an amplification reaction with DNA comprising maize event LP007-3, produce an amplification product that detects maize event LP007-3 in a sample.
In some embodiments, the first primer is selected from SEQ ID NO. 1 or a complement thereof, SEQ ID NO. 8 or SEQ ID NO. 12; the second primer is selected from SEQ ID NO. 2 or a complementary sequence thereof, SEQ ID NO. 11 or SEQ ID NO. 14.
In some embodiments of the invention, the amplification product comprises at least 11 contiguous nucleotides of SEQ ID NO. 3 or the complement thereof, or at least 11 contiguous nucleotides of SEQ ID NO. 4 or the complement thereof.
Further, the amplification product includes the 1 st to 11 th or 12 th to 22 nd consecutive nucleotides of SEQ ID NO. 1 or its complementary sequence, or the 1 st to 11 th or 12 th to 22 nd consecutive nucleotides of SEQ ID NO. 2 or its complementary sequence.
Still further, the amplification product comprises SEQ ID NO. 1 or a complement thereof, SEQ ID NO. 2 or a complement thereof, SEQ ID NO. 6 or a complement thereof, or SEQ ID NO. 7 or a complement thereof.
In the above technical solution, the primer comprises at least one of the nucleic acid sequences. Specifically, the primers comprise a first primer and a second primer, wherein the first primer is selected from SEQ ID NO. 1 or a complementary sequence thereof, SEQ ID NO. 8 or SEQ ID NO. 12, and the second primer is selected from SEQ ID NO. 9 or SEQ ID NO. 13; or the first primer is selected from SEQ ID NO. 2 or a complementary sequence thereof, SEQ ID NO. 11 or SEQ ID NO. 14, and the second primer is selected from SEQ ID NO. 10 or SEQ ID NO. 15.
The invention also provides a DNA probe comprising a fragment of SEQ ID NO. 5 or a complementary sequence thereof, which hybridizes under stringent hybridization conditions to a DNA molecule comprising a nucleic acid sequence selected from SEQ ID NO. 1 to 7 or a complementary sequence thereof and does not hybridize under stringent hybridization conditions to a DNA molecule not comprising a nucleic acid sequence selected from SEQ ID NO. 1 to 7 or a complementary sequence thereof.
In some embodiments, the DNA probe comprises a sequence selected from SEQ ID NO 1 or its complement, SEQ ID NO 2 or its complement, SEQ ID NO 6 or its complement, and SEQ ID NO 7 or its complement.
In some embodiments, the DNA probe is labeled with a fluorophore.
In some embodiments, the probe comprises at least 11 contiguous nucleotides of SEQ ID No. 3 or the complement thereof, or at least 11 contiguous nucleotides of SEQ ID No. 4 or the complement thereof; further, the probe includes the 1 st to 11 th or 12 th to 22 th continuous nucleotides of SEQ ID NO. 1 or its complementary sequence, or the 1 st to 11 th or 12 th to 22 th continuous nucleotides of SEQ ID NO. 2 or its complementary sequence.
The invention also provides a marker nucleic acid molecule comprising a fragment of SEQ ID NO. 5 or the complement thereof, which hybridizes under stringent hybridization conditions to a DNA molecule comprising a nucleic acid sequence selected from SEQ ID NO. 1 to 7 or the complement thereof and does not hybridize under stringent hybridization conditions to a DNA molecule not comprising a nucleic acid sequence selected from SEQ ID NO. 1 to 7 or the complement thereof.
In some embodiments, the marker nucleic acid molecule comprises a sequence selected from SEQ ID NO 1 or a complement thereof, SEQ ID NO 2 or a complement thereof, SEQ ID NO 6 or a complement thereof, and SEQ ID NO 7 or a complement thereof.
In one embodiment, the marker nucleic acid molecule comprises at least 11 contiguous nucleotides of SEQ ID No. 3 or the complement thereof, or at least 11 contiguous nucleotides of SEQ ID No. 4 or the complement thereof;
in some embodiments, the marker nucleic acid molecule comprises consecutive nucleotides 1 to 11 or 12 to 22 of SEQ ID NO. 1 or the complement thereof, or consecutive nucleotides 1 to 11 or 12 to 22 of SEQ ID NO. 2 or the complement thereof.
Further, the present invention provides a method of detecting the presence of DNA comprising transgenic corn event LP007-3 in a sample comprising:
(1) contacting a sample to be detected with the DNA primer pair in a nucleic acid amplification reaction;
(2) performing a nucleic acid amplification reaction;
(3) detecting the presence of the amplification product;
the amplification product comprises a nucleic acid sequence selected from the group consisting of sequences SEQ ID NOS: 1-7 and complements thereof, i.e., indicates the presence of DNA comprising transgenic maize event LP007-3 in a test sample.
The present invention also provides a method of detecting the presence of DNA comprising transgenic corn event LP007-3 in a sample comprising:
(1) contacting the sample to be tested with said DNA probe, and/or said marker nucleic acid molecule;
(2) hybridizing the sample to be tested to the probe and/or the marker nucleic acid molecule under stringent hybridization conditions;
(3) detecting the hybridization of the sample to be detected with the probe and/or the marker nucleic acid molecule.
The stringent conditions may be hybridization in a 6 XSSC (sodium citrate), 0.5% SDS (sodium dodecyl sulfate) solution at 65 ℃ and then washing the membrane 1 time each with 2 XSSC, 0.1% SDS and 1 XSSC, 0.1% SDS.
Wherein, the hybridization between the sample to be detected and the marker nucleic acid molecule is detected, and then the insect resistance and/or herbicide tolerance is determined to be genetically linked with the marker nucleic acid molecule through marker-assisted breeding analysis.
The present invention also provides a DNA detection kit comprising: a pair of DNA primers that produce an amplicon diagnostic for transgenic maize event LP007-3, a probe specific for SEQ ID NO. 1-7 or a marker nucleic acid molecule specific for SEQ ID NO. 1-7. Specifically, the detection kit comprises the probe, the primer pair or the marker nucleic acid molecule.
In some embodiments, the invention provides a DNA detection kit comprising at least one DNA molecule comprising at least 11 contiguous nucleotides of the homologous sequence of SEQ ID No. 3 or the complement thereof, or at least 11 contiguous nucleotides of the homologous sequence of SEQ ID No. 4 or the complement thereof, which can serve as a DNA primer or probe specific for transgenic corn event LP007-3 or progeny thereof.
Further, the DNA molecule includes the 1 st to 11 th or 12 th to 22 nd consecutive nucleotides of SEQ ID NO. 1 or its complementary sequence, or the 1 st to 11 th or 12 th to 22 nd consecutive nucleotides of SEQ ID NO. 2 or its complementary sequence.
Further, the DNA molecule comprises the homologous sequence of SEQ ID NO. 1 or a complementary sequence thereof, the homologous sequence of SEQ ID NO. 2 or a complementary sequence thereof, the homologous sequence of SEQ ID NO. 6 or a complementary sequence thereof, or the homologous sequence of SEQ ID NO. 7 or a complementary sequence thereof. To achieve the above object, the present invention also provides a plant cell comprising a nucleic acid sequence encoding insect-resistant Cry1Ab, Cry2Ab, and Vip3Aa proteins, a nucleic acid sequence encoding a glyphosate herbicide-tolerant EPSPS protein, and a nucleic acid sequence of a specific region comprising the sequence shown in SEQ ID No. 1, SEQ ID No. 2, SEQ ID No. 6, or SEQ ID No. 7.
The sequences provided by the present invention include those listed in table 2 below:
TABLE 2 related sequences of the invention
Figure BDA0002919315000000071
Figure BDA0002919315000000081
Figure BDA0002919315000000091
The present invention also provides a method of protecting a corn plant from insect infestation comprising providing at least one transgenic corn plant cell comprising transgenic corn event LP007-3 in the diet of a target insect; target insects that feed on the transgenic corn plant cell are inhibited from further feeding on the corn plant.
The present invention also provides a method of protecting a corn plant from herbicide-induced damage by growing at least one transgenic corn plant comprising transgenic corn event LP 007-3. In some embodiments, the method comprises applying an effective dose of glyphosate herbicide to a field in which at least one transgenic corn plant comprising transgenic corn event LP007-3 is grown.
The present invention also provides a method of controlling weeds in a field planted with corn plants comprising applying an effective dose of a glyphosate herbicide to a field planted with at least one transgenic corn plant comprising transgenic corn event LP 007-3.
The present invention also provides a method of growing an insect resistant corn plant comprising: planting at least one corn seed comprising transgenic corn event LP 007-3;
growing the corn seed into a corn plant;
(ii) attacking said maize plant with a target insect, and/or spraying said maize plant with an effective dose of glyphosate herbicide, harvesting a plant having reduced plant damage compared to other plants not comprising said transgenic maize event LP 007-3.
In some embodiments, the present invention provides a method of growing a corn plant that is resistant to insects and tolerant to glyphosate herbicide, comprising:
planting at least one corn seed comprising transgenic corn event LP 007-3;
growing the corn seed into a corn plant;
spraying the corn plants with an effective dose of glyphosate herbicide, harvesting plants having reduced plant damage that are also resistant to insect feeding damage compared to other plants not having the transgenic corn event LP 007-3.
In some embodiments, the present invention also provides a method of producing a maize plant that is resistant to insects, comprising introducing transgenic maize event LP007-3 into the genome of said maize plant, selecting a maize plant that has reduced plant damage to feeding by insects. In some embodiments, the method comprises: sexually crossing a first parent corn plant of transgenic corn event LP007-3 that is resistant to insects with a second parent corn plant that lacks insect resistance, thereby producing a plurality of progeny plants; (ii) infesting the progeny plant with a target insect; selecting the progeny plant having reduced plant damage compared to other plants not having transgenic maize event LP 007-3.
In some embodiments, the present invention also provides a method of producing a corn plant that is tolerant to glyphosate herbicide comprising introducing transgenic corn event LP007-3 into the genome of said corn plant and selecting a corn plant that is tolerant to glyphosate. In some embodiments, the method comprises: sexually crossing a first parental maize plant of transgenic maize event LP007-3 that is tolerant to glyphosate herbicide with a second parental maize plant that lacks glyphosate tolerance, thereby producing a plurality of progeny plants; treating said progeny plants with glyphosate herbicide; selecting said progeny plants that are tolerant to glyphosate.
In some embodiments, the present invention also provides a method of producing a corn plant that is resistant to insects and tolerant to application of a glyphosate herbicide, comprising: introducing transgenic maize event LP007-3 into the genome of said maize plant, selecting a maize plant that is tolerant to glyphosate and resistant to insects. In some embodiments, the method comprises sexually crossing a glyphosate tolerant and insect resistant transgenic corn event LP007-3 first parent corn plant with a second parent corn plant lacking glyphosate tolerance and/or insect resistance, thereby producing a plurality of progeny plants; treating said progeny plants with glyphosate; selecting said progeny plants that are tolerant to glyphosate, said progeny plants that are tolerant to glyphosate also being resistant to feeding damage by insects.
The present invention also provides a composition for producing autogenic corn event LP007-3, said composition being corn flour, corn oil, corn cobs, or corn starch. In some embodiments, the composition may be an agricultural or commercial product such as corn flour, corn oil, corn starch, corn gluten, corn tortilla, cosmetics, or bulking agents. If a sufficient amount of expression is detected in the composition, the composition is expected to contain a nucleic acid sequence capable of diagnosing the presence of the transgenic maize event LP007-3 material in the composition. In particular, the compositions include, but are not limited to, corn oil, corn meal, corn flour, corn gluten, corn tortillas, corn starch, and any other food product intended for consumption by an animal as a food source, or otherwise for cosmetic use as an extender or ingredient in a cosmetic composition, and the like.
The probe or primer pair based detection methods and/or kits of the invention can be employed to detect a transgenic corn event LP007-3 nucleic acid sequence, such as shown in SEQ ID NO 1 or SEQ ID NO 2, in a biological sample, wherein the probe sequence or primer sequence is selected from the group consisting of the sequences shown in SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 3, SEQ ID NO 4, and SEQ ID NO 5, to diagnose the presence of a transgenic corn event LP 007-3.
In conclusion, the transgenic corn event LP007-3 of the invention has dual traits of insect resistance and herbicide resistance, and has the following advantages: 1) the corn borers, the spodoptera frugiperda, the oriental armyworms, the spodoptera frugiperda, the spike moths, the agrotis cutanea, the dichocrocis punctiferalis and the like are main pests in a corn planting area, and the Asia corn borers, the spodoptera frugiperda, the oriental armyworms, the spodoptera frugiperda, the spike moths, the agrotis microti, the dichocrocis punctiferalis and the like are prevented from economic loss caused by lepidoptera pests (such as Asian; 2) the ability to apply glyphosate-containing agricultural herbicides to corn crops for broad-spectrum weed control; 3) the corn yield was not reduced. Specifically, the event LP007-3 of the invention has high resistance to insects, can enable the death rate of pests to reach 100%, and protects plants to enable the damage rate to be as low as 0%; the glyphosate herbicide tolerance is high, and the plant can be protected to reduce the damage rate to 0%; and the agronomic characters of the plants containing the event are excellent, and the yield percentage can reach 100 percent. Furthermore, the genes encoding the insect resistance and glyphosate tolerance traits are linked on the same DNA segment and are present at a single locus in the genome of transgenic maize event LP007-3, which provides enhanced breeding efficiency and enables the use of molecular markers to track the transgene insert in breeding populations and progeny thereof. Meanwhile, the primer or probe sequence provided by the detection method can generate an amplification product for diagnosing the transgenic corn event LP007-3 or the descendants thereof, and the existence of the plant material derived from the transgenic corn event LP007-3 can be quickly, accurately and stably identified.
Term(s) for
The following definitions and methods may better define the invention and guide those of ordinary skill in the art in the practice of the invention, unless otherwise indicated, the terms are understood according to their conventional usage by those of ordinary skill in the art.
The "corn" refers to maize (Zea mays) and includes all plant species that can be mated with corn, including wild corn species.
The term "comprising" means "including but not limited to". The term "processed product" refers to a product obtained by processing a raw material such as a plant or a seed, for example, a composition.
The term "plant" includes whole plants, plant cells, plant organs, plant protoplasts, plant cell tissue cultures from which plants can be regenerated, plant calli, plant clumps (plant granules), and plant cells intact in plants or plant parts such as embryos, pollen, ovules, seeds, leaves, flowers, branches, fruits, stalks, roots, root tips, anthers, and the like. It is to be understood that parts of transgenic plants within the scope of the present invention, which are derived from transgenic plants or progeny thereof which have been previously transformed with a DNA molecule of the invention and thus consist at least in part of transgenic cells, include, but are not limited to, plant cells, protoplasts, tissue, callus, embryos, and flowers, stems, fruits, leaves, and roots.
The term "gene" refers to a nucleic acid fragment that expresses a particular protein, including regulatory sequences preceding the coding sequence (5 'non-coding sequences) and regulatory sequences following the coding sequence (3' non-coding sequences). "native gene" refers to a gene that is naturally found to have its own regulatory sequences. "chimeric gene" refers to any gene that is not a native gene, comprising regulatory and coding sequences not found in nature. "endogenous gene" refers to a native gene that is located in its natural location in the genome of an organism. "foreign gene" is a foreign gene that exists in the genome of an organism and does not originally exist, and also refers to a gene that has been introduced into a recipient cell through a transgenic step. The foreign gene may comprise a native gene or a chimeric gene inserted into a non-native organism. A "transgene" is a gene that has been introduced into the genome by a transformation procedure. The site in the plant genome at which the recombinant DNA has been inserted may be referred to as an "insertion site" or "target site".
"flanking DNA" may comprise the genome as it occurs naturally in an organism such as a plant or foreign (heterologous) DNA introduced by the transformation process, such as a fragment associated with the transformation event. Thus, flanking DNA may include a combination of native and foreign DNA. In the present invention, a "flanking region" or "flanking sequence" or "genomic boundary region" or "genomic boundary sequence" refers to a sequence of at least 3, 5, 10, 11, 15, 20, 50, 100, 200, 300, 400, 1000, 1500, 2000, 2500, or 5000 base pairs or more in length, which is located directly upstream or downstream of and adjacent to the originally exogenously inserted DNA molecule. When the flanking region is located downstream, it may also be referred to as "left border flanking" or "3 'genomic border region" or "genomic 3' border sequence" or the like. When the flanking region is located upstream, it may also be referred to as "right border flanking" or "5 'genomic border region" or "genomic 5' border sequence" or the like.
Transformation procedures that result in random integration of the foreign DNA will result in transformants that contain different flanking regions that are specifically contained by each transformant. When the recombinant DNA is introduced into a plant by conventional crossing, its flanking regions are not usually altered. Transformants will also contain unique junctions between the heterologous insert DNA and segments of genomic DNA or between two segments of heterologous DNA. "junction" is the point at which two specific DNA fragments are joined. For example, the junction is present where the insert DNA joins the flanking DNA. A junction point is also present in a transformed organism where two DNA fragments are joined together in a manner that is modified in the way found in the native organism. "junction DNA" refers to DNA comprising a junction site.
The present invention provides a transgenic corn event designated LP007-3, and progeny thereof, said transgenic corn event LP007-3 being a corn plant LP007-3 comprising plants and seeds of transgenic corn event LP007-3 and plant cells or regenerable parts thereof, said plant parts of transgenic corn event LP007-3 including, but not limited to, cells, pollen, ovules, flowers, buds, roots, stems, silks, inflorescences, ears, leaves, and products from corn plant LP007-3, such as corn meal, corn oil, corn steep liquor, corn silks, corn starch, and biomass left in a field of corn crops.
The transgenic corn event LP007-3 of the present invention comprises a DNA construct which when expressed in a plant cell, the transgenic corn event LP007-3 acquires resistance to insects and tolerance to glyphosate herbicide.
In some embodiments of the invention, the DNA construct comprises four expression cassettes in tandem, the first expression cassette comprising a suitable promoter for expression in a plant operably linked to a nucleic acid sequence operably linked to an insect-resistant Cry2Ab protein (ccy 2Ab) from bacillus thuringiensis, said Cry2Ab protein being lepidopteran insect-resistant; a second expression cassette consisting of a nucleic acid sequence comprising a suitable promoter for expression in plants operably linked to an insect-resistant Vip3Aa protein of bacillus thuringiensis (cVip3Aa), said Vip3Aa being lepidopteran insect-resistant, and a suitable polyadenylation signal sequence; the third expression cassette comprises a suitable promoter for expression in plants operably linked to a nucleic acid sequence of a Cry1Ab protein, the nucleic acid sequence of said Cry1Ab protein being primarily resistant to lepidopteran insects, and a suitable polyadenylation signal sequence. The fourth expression cassette comprises a suitable promoter for expression in a plant operably linked to a gene encoding 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) and a suitable polyadenylation signal sequence, the nucleic acid sequence of the EPSPS protein being tolerant to glyphosate herbicide. Further, the promoter may be a suitable promoter isolated from a plant, including constitutive, inducible and/or tissue specific promoters, suitable promoters include, but are not limited to, the cauliflower mosaic virus (CaMV)35S promoter, the Figwort Mosaic Virus (FMV)35S promoter, the Ubiquitin protein (Ubiquitin) promoter, the Actin (Actin) promoter, the Agrobacterium tumefaciens (Agrobacterium tumefaciens) nopaline synthase (NOS) promoter, the octopine synthase (OCS) promoter, the nocturnal (Cestrum) yellow leaf curly virus promoter, the potato tuber storage protein (Patatin) promoter, the ribulose-1, 5-bisphosphate carboxylase/oxygenase (rusco) promoter, the glutathione thiotransferase (GST) promoter, the E9 promoter, the GOS promoter, the alcA/alcR promoter, the Agrobacterium rhizogenes (Agrobacterium rhizogenes) RolD promoter, and the Arabidopsis thaliana (Arabidopsis thaliana) Suc2 promoter. The polyadenylation signal sequence may be a suitable polyadenylation signal sequence that functions in plants, including, but not limited to, polyadenylation signal sequence derived from the Agrobacterium tumefaciens nopaline synthase (NOS) gene, cauliflower mosaic virus (CaMV)35S terminator, polyadenylation signal sequence derived from the protease inhibitor II (PIN II) gene, and polyadenylation signal sequence derived from the alpha-tubulin (alpha-tubulin) gene.
In addition, the expression cassette may also include other genetic elements including, but not limited to, enhancers and signal peptide/transit peptide nucleic acid encoding sequences. The enhancer may enhance the expression level of a gene, including, but not limited to, Tobacco Etch Virus (TEV) translational activator, CaMV35S enhancer, and FMV35S enhancer. The signal peptide/transit peptide may direct the transport of the Cry1Ab protein and/or EPSPS protein to a particular organelle or compartment outside or within the cell, for example, targeting the chloroplast using a sequence encoding a chloroplast transit peptide, or targeting the endoplasmic reticulum using a 'KDEL' retention sequence.
The Cry1Ab, Cry2Ab and Vip3Aa genes can be obtained by separating from Bacillus thuringiensis (Bt for short), and the nucleic acid sequences of Cry1Ab, Cry2Ab and Vip3Aa genes can be changed by optimizing codons or in other ways, so that the purpose of increasing the stability and the availability of transcripts in transformed cells is achieved.
In some embodiments of the invention, a maize cell, seed or plant comprising transgenic maize event LP007-3 comprises in its genome the nucleic acid sequence of SEQ ID NO 1, SEQ ID NO 5, position 1530-17132 and SEQ ID NO 2, in that order, or comprises SEQ ID NO 5.
The Lepidoptera, the academic name Lepidoptera, comprises two kinds of insects, namely moths and butterflies, and is the most one of the insects in agriculture and forestry, such as corn borers, cotton bollworms, oriental armyworms, Spodoptera frugiperda, Athetis lepigone, dichocrocis punctifera and the like.
The 5-enol-pyruvylshikimate-3-phosphate synthase (EPSPS) gene may be isolated from Agrobacterium tumefaciens (Agrobacterium tumefaciens sp.) CP4 strain, and the polynucleotide encoding the EPSPS gene may be altered by codon optimization or in other ways to increase the stability and availability of the transcript in the transformed cell. The 5-enol-pyruvylshikimate-3-phosphate synthase (EPSPS) gene can also be used as a selectable marker gene.
By "glyphosate" is meant N-phosphonomethylglycine and its salts and by "treatment with glyphosate herbicide" is meant treatment with any herbicide formulation containing glyphosate. The rate of use of a certain glyphosate formulation to achieve an effective biological dose is not chosen beyond the skill of the ordinary agronomic artisan. Treatment of a field containing plant material derived from transgenic corn event LP007-3 with any one of the glyphosate-containing herbicide formulations will control weed growth in the field and not affect the growth or yield of plant material derived from transgenic corn event LP 007-3.
The DNA construct is introduced into a plant using transformation methods including, but not limited to, Agrobacterium-mediated transformation, biolistic transformation, and pollen tube channel transformation.
The Agrobacterium-mediated transformation method is a commonly used method for plant transformation. The foreign DNA to be introduced into the plant is cloned between the left and right border consensus sequences of the vector, i.e.the T-DNA region. Said vector is transformed into an agrobacterium cell, which is subsequently used to infect plant tissue, said T-DNA region of the vector comprising the foreign DNA being inserted into the plant genome.
The particle gun transformation method is to bombard plant cells with vectors containing exogenous DNA (particle-mediated biolistic transformation).
The pollen tube channel transformation method is characterized in that a natural pollen tube channel (also called a pollen tube guide tissue) formed after plant pollination is utilized, and exogenous DNA is carried into an embryo sac through a nucellar channel.
After transformation, transgenic plants must be regenerated from the transformed plant tissue and progeny with exogenous DNA selected using appropriate markers.
A DNA construct is a combination of DNA molecules linked together to provide one or more expression cassettes. The DNA construct is in particular a plasmid which is capable of autonomous replication in bacterial cells and which contains various restriction sites for the introduction of DNA molecules which provide functional genetic elements, i.e.promoters, introns, leader sequences, coding sequences, 3' terminator regions and other sequences. The expression cassette contained in the DNA construct, which includes the genetic elements necessary to provide for transcription of messenger RNA, can be designed for expression in prokaryotic or eukaryotic cells. The expression cassettes of the invention are designed to be most specifically expressed in plant cells.
A transgenic "event" is obtained by transforming a plant cell with a heterologous DNA construct, i.e., comprising at least one nucleic acid expression cassette containing a gene of interest, inserting into the plant genome by transgenic means to produce a population of plants, regenerating said population of plants, and selecting for a particular plant characterized by the insertion of a particular genomic locus. The term "event" refers to both the original transformant comprising the heterologous DNA and progeny of the transformant. The term "event" also refers to progeny resulting from sexual crosses between a transformant and an individual of another variety containing heterologous DNA, even after repeated backcrossing with the backcross parent, where the inserted DNA and flanking genomic DNA from the transformant parent are present at the same chromosomal location in the progeny of the cross. The term "event" also refers to a DNA sequence from an original transformant that comprises an inserted DNA and flanking genomic sequences immediately adjacent to the inserted DNA, which DNA sequence is expected to be transferred to progeny that result from sexual crossing of a parental line containing the inserted DNA (e.g., the original transformant and its progeny produced by selfing) with a parental line that does not contain the inserted DNA, and which progeny has received the inserted DNA comprising the gene of interest.
"recombinant" in the context of the present invention refers to a form of DNA and/or protein and/or organism that is not normally found in nature and is therefore produced by human intervention. Such manual intervention may result in recombinant DNA molecules and/or recombinant plants. Such "recombinant DNA molecules" are obtained by artificially combining two otherwise isolated sequence segments, for example, by chemical synthesis or by manipulating an isolated nucleic acid segment by genetic engineering techniques. Techniques for performing nucleic acid manipulations are well known.
The term "transgene" includes any cell, cell line, callus, tissue, plant part or plant, the genotype of which is altered by the presence of heterologous nucleic acid, including the transgene body that was originally so altered, as well as progeny individuals generated from the original transgene body by sexual crossing or asexual reproduction. In the present invention, the term "transgene" does not include changes (chromosomal or extra-chromosomal) in the genome by conventional plant breeding methods or naturally occurring events such as random allofertilization, non-recombinant viral infection, non-recombinant bacterial transformation, non-recombinant transposition, or spontaneous mutation.
By "heterologous" in the context of the present invention is meant that the first molecule is not normally found in combination with the second molecule in nature. For example, a molecule may be derived from a first species and inserted into the genome of a second species. Such molecules are therefore heterologous to the host and are artificially introduced into the genome of the host cell.
Culturing transgenic corn event LP007-3 that is resistant to lepidopteran insects and tolerant to glyphosate herbicide can be accomplished by the steps of: first sexually crossing a first parent corn plant consisting of a corn plant bred from transgenic corn event LP007-3 and its progeny, the transgenic corn event LP007-3 and its progeny resulting from transformation with the lepidopteran insect-resistant glyphosate herbicide-tolerant expression cassette of the present invention, with a second parent corn plant lacking lepidopteran insect resistance and/or glyphosate herbicide tolerance, to produce a plurality of first generation progeny plants; progeny plants that are resistant to lepidopteran insect infestation and/or tolerant to glyphosate herbicide are then selected, and corn plants that are resistant to lepidopteran insects and tolerant to glyphosate herbicide can be grown. These steps can further include backcrossing the lepidopteran insect-resistant and/or glyphosate-tolerant progeny plants with the second or third parent corn plant, and then selecting the progeny by infestation with the lepidopteran insect, application of a glyphosate herbicide, or by identification of a trait-related molecular marker (e.g., a DNA molecule comprising the junction sites identified at the 5 'end and 3' end of the insertion sequence in transgenic corn event LP 007-3), thereby producing a corn plant that is resistant to lepidopteran insects and tolerant to the glyphosate herbicide.
It is also understood that two different transgenic plants may also be crossed to produce progeny containing two separate, separately added exogenous genes. Selfing of appropriate progeny can yield progeny plants that are homozygous for both added exogenous genes. Backcrossing of parental plants and outcrossing with non-transgenic plants as described above is also contemplated, as is asexual propagation.
The term "probe" is an isolated nucleic acid molecule to which a conventional detectable label or reporter molecule, such as a radioisotope, ligand, chemiluminescent agent or enzyme, has been attached. Such a probe is complementary to one strand of the target nucleic acid, and in the present invention, the probe is complementary to one strand of DNA from the genome of transgenic corn event LP007-3, whether the genomic DNA is from transgenic corn event LP007-3 or a seed or plant or seed or extract derived from transgenic corn event LP 007-3. Probes of the invention include not only deoxyribonucleic or ribonucleic acids, but also polyamides and other probe materials that specifically bind to a target DNA sequence and can be used to detect the presence of the target DNA sequence.
The term "primer" is an isolated nucleic acid molecule that binds to a complementary target DNA strand by nucleic acid hybridization, annealing, forming a hybrid between the primer and the target DNA strand, and then extending along the target DNA strand under the action of a polymerase (e.g., a DNA polymerase). The primer pairs of the present invention are directed to their use in amplification of a target nucleic acid sequence, for example, by Polymerase Chain Reaction (PCR) or other conventional nucleic acid amplification methods.
Methods of designing and using primers and probes are well known in the art. DNA molecules comprising full length or fragments of SEQ ID NOS: 1-7 are useful as primers and probes for detecting maize event LP007-3 and can be readily designed by one of skill in the art using the sequences provided herein.
The length of the probes and primers is generally 11 polynucleotides or more, preferably 18 polynucleotides or more, more preferably 24 polynucleotides or more, and most preferably 30 polynucleotides or more. Such probes and primers hybridize specifically to the target sequence under highly stringent hybridization conditions. Although probes that are different from and maintain the ability to hybridize to the target DNA sequence can be designed by conventional methods, it is preferred that the probes and primers of the present invention have complete DNA sequence identity to the contiguous nucleic acid of the target sequence.
Primers and probes based on the flanking genomic DNA and the inserted sequences of the present invention can be determined by conventional methods, for example, by isolating the corresponding DNA molecule from plant material derived from transgenic maize event LP007-3 and determining the nucleic acid sequence of the DNA molecule. The DNA molecule comprises a transgene insert and a maize genomic flanking region, and fragments of the DNA molecule can be used as primers or probes.
The nucleic acid probes and primers of the invention hybridize to a target DNA sequence under stringent conditions. Any conventional nucleic acid hybridization or amplification method can be used to identify the presence of DNA derived from transgenic maize event LP007-3 in a sample. Nucleic acid molecules or fragments thereof are capable of specifically hybridizing to other nucleic acid molecules under certain circumstances. As used herein, two nucleic acid molecules can be said to be capable of specifically hybridizing to each other if they are capable of forming an antiparallel, double-stranded nucleic acid structure. Two nucleic acid molecules are said to be "complements" of one another if they exhibit complete complementarity. As used herein, a nucleic acid molecule is said to exhibit "perfect complementarity" when each nucleotide of the nucleic acid molecule is complementary to a corresponding nucleotide of another nucleic acid molecule. Two nucleic acid molecules are said to be "minimally complementary" if they are capable of hybridizing to each other with sufficient stability to allow them to anneal and bind to each other under at least conventional "low stringency" conditions. Similarly, two nucleic acid molecules are said to have "complementarity" if they are capable of hybridizing to each other with sufficient stability to allow them to anneal and bind to each other under conventional "highly stringent" conditions. Deviations from perfect complementarity may be tolerated as long as such deviations do not completely prevent the formation of a double-stranded structure by the two molecules. In order to allow a nucleic acid molecule to act as a primer or probe, it is only necessary to ensure sufficient complementarity in sequence to allow the formation of a stable double-stranded structure in the particular solvent and salt concentrations employed.
As used herein, a substantially homologous sequence is a nucleic acid molecule that specifically hybridizes under highly stringent conditions to the complementary strand of a matched nucleic acid molecule. Suitable stringency conditions for promoting DNA hybridization include, for example, treatment with 6.0 XSSC/sodium citrate (SSC) at about 45 ℃ followed by a wash with 2.0 XSSC at 50 ℃, as is well known to those skilled in the art. For example, the salt concentration in the washing step can be selected from the group consisting of about 2.0 XSSC for low stringency conditions, 50 ℃ to about 0.2 XSSC for high stringency conditions, 50 ℃. In addition, the temperature conditions in the washing step can be raised from about 22 ℃ at room temperature for low stringency conditions to about 65 ℃ for high stringency conditions. Both the temperature conditions and the salt concentration may be varied, or one may be held constant while the other is varied. Specifically, a nucleic acid molecule of the invention can specifically hybridize to one or more of SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 3, SEQ ID NO 4, SEQ ID NO 5, SEQ ID NO 6 and SEQ ID NO 7, or complements thereof, or any fragment thereof, under moderately stringent conditions, such as at about 2.0 XSSC and about 65 ℃. More specifically, a nucleic acid molecule of the invention specifically hybridizes under highly stringent conditions to one or more of SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 3, SEQ ID NO 4, SEQ ID NO 5, SEQ ID NO 6 and SEQ ID NO 7, or a complement thereof, or any fragment thereof. In the context of the present invention, preferred marker nucleic acid molecules have SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 6 or SEQ ID NO 7 or the complement thereof or any fragment of the aforementioned sequences. Another preferred marker nucleic acid molecule of the invention has 80% to 100% or 90% to 100% sequence identity with SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 6 or SEQ ID NO 7 or the complement thereof or any fragment thereof. SEQ ID NO 1, SEQ ID NO 2, SEQ ID NO 6 and SEQ ID NO 7 can be used as markers in plant breeding methods to identify progeny of a genetic cross. Hybridization of the probe to the target DNA molecule can be detected by any method known to those skilled in the art, including, but not limited to, fluorescent, radioactive, antibody-based, and chemiluminescent labels.
With respect to amplification of a target nucleic acid sequence using a particular amplification primer (e.g., by PCR), "stringent conditions" refer to conditions that allow only hybridization of the primer to the target nucleic acid sequence in a DNA thermal amplification reaction, with a primer having a wild-type sequence (or its complement) corresponding to the target nucleic acid sequence that is capable of binding to the target nucleic acid sequence and preferably producing a unique amplification product, i.e., an amplicon.
The term "specifically binds (target sequence)" means that the probe or primer hybridizes under stringent hybridization conditions only to the target sequence in a sample containing the target sequence.
As used herein, "amplified DNA," "amplification product," or "amplicon" refers to the nucleic acid amplification product of a target nucleic acid sequence that is part of a nucleic acid template. For example, to determine whether a corn plant was produced by sexual hybridization containing the transgenic corn event LP007-3 of the present invention, or whether a corn sample collected from a field comprised the transgenic corn event LP007-3, or whether a corn extract, such as meal, flour, or oil, comprised the transgenic corn event LP007-3, DNA extracted from a corn plant tissue sample or extract can be subjected to a nucleic acid amplification method using a primer pair to produce an amplicon diagnostic for the presence of DNA of the transgenic corn event LP 007-3. The primer pair includes a first primer derived from a flanking sequence adjacent to the insertion site of the inserted foreign DNA in the plant genome, and a second primer derived from the inserted foreign DNA. The amplicon has a length and sequence that is also diagnostic for the transgenic maize event LP 007-3. The amplicon can range in length from the bound length of the primer pair plus one nucleotide base pair, preferably plus about fifty nucleotide base pairs, more preferably plus about two hundred fifty nucleotide base pairs, and most preferably plus about four hundred fifty nucleotide base pairs or more.
Alternatively, primer pairs may be derived from flanking genomic sequences flanking the inserted DNA to produce amplicons that include the entire inserted nucleic acid sequence. One of the primer pairs derived from a plant genomic sequence may be located at a distance from the inserted DNA sequence that may range from one nucleotide base pair to about twenty thousand nucleotide base pairs. The use of the term "amplicon" specifically excludes primer dimers formed in the DNA thermal amplification reaction.
The nucleic acid amplification reaction may be carried out by any of the nucleic acid amplification reaction methods known in the art, including the Polymerase Chain Reaction (PCR). Various nucleic acid amplification methods are well known to those skilled in the art. The PCR amplification method has been developed to amplify 22kb of genomic DNA and 42kb of phage DNA. These methods, as well as other DNA amplification methods known in the art, can be used in the present invention. The inserted exogenous DNA sequence and flanking DNA sequences from transgenic corn event LP007-3 can be obtained by amplifying the genome of transgenic corn event LP007-3 using the provided primer sequences, followed by standard DNA sequencing of the PCR amplicons or cloned DNA.
DNA detection kits based on DNA amplification methods may contain DNA primer molecules that specifically hybridize to the target DNA and amplify the diagnostic amplicon under appropriate reaction conditions. The kit may provide an agarose gel based detection method or a number of methods known in the art for detecting diagnostic amplicons. Kits containing DNA primers homologous or complementary to any portion of the maize genomic region of SEQ ID NO 3 or SEQ ID NO 4, and to any portion of the transgene insert region of SEQ ID NO 5 are provided by the present invention. In particular, the primer pairs identified as useful in the DNA amplification method are SEQ ID NO 8 and SEQ ID NO 9, which amplify a diagnostic amplicon homologous to a portion of the 5' transgene/genomic region of transgenic maize event LP007-3, wherein the amplicon comprises SEQ ID NO 1. Other DNA molecules used as DNA primers may be selected from SEQ ID NO 5.
Amplicons produced by these methods can be detected by a variety of techniques. One such method is Genetic Bit Analysis, which designs a DNA oligonucleotide strand spanning an intervening DNA sequence and adjacent flanking genomic DNA sequences. The oligonucleotide strand is immobilized within a microwell of a microwell plate, and after PCR amplification of the target region (using one primer in each of the intervening sequence and adjacent flanking genomic sequence), a single-stranded PCR product can hybridize to the immobilized oligonucleotide strand and serve as a template for a single-base extension reaction using DNA polymerase and ddNTPs specifically labeled for the next desired base. The results can be obtained by fluorescence or ELISA-like methods. The signal represents the presence of the inserted/flanking sequence, indicating that the amplification, hybridization and single base extension reactions were successful.
Another method is Pyrosequencing (Pyrosequencing) technology. The method designs an oligonucleotide strand that spans the junction of the inserted DNA sequence and the adjacent genomic DNA. The oligonucleotide strand is hybridized to the single-stranded PCR product of the target region (using one primer in each of the intervening and adjacent flanking genomic sequences), and then incubated with DNA polymerase, ATP, sulfurylase, luciferase, apyrase, adenosine-5' -phosphothioate, and luciferin. dNTPs were added separately and the resulting optical signals were measured. The light signal represents the presence of the inserted/flanking sequence, indicating that the amplification, hybridization, and single or multiple base extension reactions were successful.
The fluorescence polarization phenomenon described by Chen et al (Genome Res) 9:492-498, 1999) is also a method that can be used to detect the amplicons of the present invention. Using this method requires the design of an oligonucleotide strand that spans the intervening DNA sequence and adjacent genomic DNA binding sites. The oligonucleotide strand is hybridized to the single stranded PCR product of the target region (using one primer in each of the intervening and adjacent flanking genomic sequences) and then incubated with DNA polymerase and a fluorescently labeled ddNTPs. Single base extension will result in insertion of ddNTPs. This insertion can be measured for changes in its polarization using a fluorometer. The change in polarization represents the presence of the inserted/flanking sequence, indicating that the amplification, hybridization and single base extension reactions were successful.
Taqman is described as a method for detecting and quantifying the presence of DNA sequences, which is described in detail in the instructions provided by the manufacturer. Briefly, as illustrated below, a FRET oligonucleotide probe is designed to span the inserted DNA sequence and adjacent genomic flanking binding sites. The FRET probe and PCR primers (one primer for each of the flanking genomic sequences within the insert and adjacent) are cycled in the presence of a thermostable polymerase and dNTPs. Hybridization of the FRET probe results in cleavage of the fluorescent and quenching moieties on the FRET probe and release of the fluorescent moiety. The generation of a fluorescent signal represents the presence of the inserted/flanking sequence, indicating that amplification and hybridization were successful.
Suitable techniques for detecting plant material derived from transgenic maize event LP007-3 based on hybridization principles can also include Southern blot hybridization, Northern blot hybridization, and in situ hybridization. In particular, the suitable techniques include incubating the probe and sample, washing to remove unbound probe and detecting whether the probe has hybridised. The detection method depends on the type of label attached to the probe, for example, a radiolabeled probe can be detected by X-ray exposure and development, or an enzymatically labeled probe can be detected by a color change achieved by substrate conversion.
Tyangi et al (Nat. Biotech.)14:303-308, 1996) describe the use of molecular markers for sequence detection. Briefly, a FRET oligonucleotide probe is designed to span the inserted DNA sequence and adjacent genomic flanking binding sites. The unique structure of the FRET probe results in it containing a secondary structure that is capable of retaining both a fluorescent moiety and a quenching moiety in close proximity. The FRET probe and PCR primers (one primer for each of the flanking genomic sequences within the insert and adjacent) are cycled in the presence of a thermostable polymerase and dNTPs. Upon successful PCR amplification, hybridization of the FRET probe to the target sequence results in loss of the secondary structure of the probe, thereby spatially separating the fluorescent moiety from the quencher moiety to produce a fluorescent signal. The generation of a fluorescent signal represents the presence of the inserted/flanking sequence, indicating that amplification and hybridization were successful.
Other described methods, such as microfluidics (microfluidics), provide methods and apparatus for isolating and amplifying DNA samples. The fluorochromes are used to detect and measure specific DNA molecules. A nano-tube (nanotube) device comprising an electronic sensor for detecting DNA molecules or nano-beads binding to specific DNA molecules and thus being detectable is useful for detecting the DNA molecules of the present invention.
The DNA detection kit can be developed using the compositions described herein and methods described or known in the DNA detection art. The kit is useful for identifying the presence of DNA of transgenic maize event LP007-3 in a sample and can also be used for growing maize plants containing DNA of transgenic maize event LP 007-3. The kit may contain DNA primers or probes homologous or complementary to at least a portion of SEQ ID NO 1, 2, 3, 4 or 5, or other DNA primers or probes homologous or complementary to DNA contained in the transgenic genetic element of DNA, which DNA sequences may be used in DNA amplification reactions or as probes in DNA hybridization methods.
The DNA structure of the site of the maize genome containing the transgene insert and illustrated in figure 1 and table 1 comprises: a maize LP007-3 flanking genomic region located 5' to the transgenic insert, a portion of the insert from the right border Region (RB) of agrobacterium, a first expression cassette consisting of the figwort mosaic virus 35s promoter (prFMV), operably linked to the maize heat shock protein gene HSP70 protein intron (izmwsp 70), operably linked to the maize chloroplast transit peptide 2(spZmCTP2), operably linked to the insect resistant Cry2Ab protein (ccy 2Ab) of bacillus thuringiensis, operably linked to the nopaline synthase transcription terminator (tNos); the second expression cassette consists of tandem repeat maize ubiquitin gene promoter ubi (przmubi) containing enhancer region operably linked to insect resistance gene Vip3Aa (cVip3Aa) of bacillus thuringiensis operably linked to the 9 th intron of maize phosphoenolpyruvate carboxykinase gene operably linked to the 35s RNA sequence of cauliflower mosaic virus genome; the third expression cassette consists of cauliflower mosaic virus 35S promoter (pr35S), operably linked to the 5' untranslated leader sequence (lWtCab) of the wheat chloroplast a/b binding protein, operably linked to the rice actin gene 1 intron (iOsAct1), operably linked to the insect resistant Cry1Ab protein (ccy 1Ab) of bacillus thuringiensis, and operably linked to the terminator (tin2) of benzenesulfonamide inducible gene 2; the fourth expression cassette consists of the rice actin 1 promoter (prOsAct1), operably linked to the arabidopsis thaliana EPSPS chloroplast transit peptide (spAtCTP2), operably linked to the glyphosate tolerant 5-enol-pyruvylshikimate-3-phosphate synthase (cEPSPS) of the agrobacterium CP4 strain, and operably linked to the nopaline synthase transcription terminator (tNos). A portion of the insert from the left border region (LB) of Agrobacterium, and the genomic region flanking the LP007-3 region of maize plant (SEQ ID NO:5) located at the 3' end of the transgenic insert. In the DNA amplification method, the DNA molecule used as a primer can be any portion derived from the transgene insert in transgenic maize event LP007-3, or any portion of the DNA region flanking the maize genome in transgenic maize event LP 007-3.
Transgenic corn event LP007-3 can be combined with other transgenic corn varieties, such as herbicide-tolerant corn (e.g., glufosinate, dicamba, etc.), or transgenic corn varieties carrying other insect-resistant genes (e.g., scarab, grub, diabrotica, etc.). Various combinations of all of these different transgenic events, when bred with transgenic corn event LP007-3 of the present invention, can provide improved hybrid transgenic corn varieties that are resistant to a variety of insect pests and to a variety of herbicides. These varieties can exhibit more excellent characteristics such as an increase in yield as compared with non-transgenic varieties and single-trait transgenic varieties.
The present invention provides transgenic corn event LP007-3, nucleic acid sequences useful for detecting corn plants comprising the event and methods for detecting the same, transgenic corn event LP007-3 is resistant to feeding damage by lepidopteran pests and is resistant to the phytotoxic effects of glyphosate-containing agricultural herbicides. The corn plants with the dual traits express Cry1Ab, Cry2Ab and Vip3Aa proteins of Bacillus thuringiensis, which provide resistance to feeding damage by lepidopteran pests (such as Asian corn borer, Spodoptera frugiperda); and which expresses a glyphosate resistant 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) protein of agrobacterium strain CP4 which confers glyphosate tolerance to plants. The dual-character corn has the following advantages: 1) the corn borers, the spodoptera frugiperda, the oriental armyworms, the spodoptera frugiperda, the spike moths, the agrotis cutanea, the dichocrocis punctiferalis and the like are main pests in a corn planting area, and the Asia corn borers, the spodoptera frugiperda, the oriental armyworms, the spodoptera frugiperda, the spike moths, the agrotis microti, the dichocrocis punctiferalis and the like are prevented from economic loss caused by lepidoptera pests (such as Asian; 2) the ability to apply glyphosate-containing agricultural herbicides to corn crops for broad-spectrum weed control; 3) the corn yield was not reduced. Specifically, the event LP007-3 of the invention has high resistance to insects, can enable the death rate of pests to reach 100%, and protects plants to enable the damage rate to be as low as 0%; the glyphosate herbicide tolerance is high, and the plant can be protected to reduce the damage rate to 0%; and the agronomic characters of the plants containing the event are excellent, and the yield percentage can reach 100 percent. Furthermore, the genes encoding the insect resistance and glyphosate tolerance traits are linked on the same DNA segment and are present at a single locus in the genome of transgenic maize event LP007-3, which provides enhanced breeding efficiency and enables the use of molecular markers to track the transgene insert in breeding populations and progeny thereof. Meanwhile, the primer or probe sequence provided by the detection method can generate an amplification product for diagnosing the transgenic corn event LP007-3 or the descendants thereof, and the existence of the plant material derived from the transgenic corn event LP007-3 can be quickly, accurately and stably identified.
Drawings
FIG. 1 is a schematic diagram showing the structure of the binding site of the transgene insert sequence and the maize genome for detecting the nucleic acid sequence LP007-3 of the maize plant and the detection method thereof according to the present invention;
FIG. 2 is a schematic structural diagram of a recombinant expression vector pLP007 for use in the detection of the nucleic acid sequence of the maize plant LP007-3 and the detection method thereof according to the present invention;
FIG. 3 is an ex vivo resistance effect on lepidopteran pests in transgenic corn of the present invention comprising transgenic corn event LP 007-3;
FIG. 4 is a graph of the effect of artificial inoculation of transgenic maize comprising transgenic maize event LP007-3 in the field of Zea mays borer according to the present invention;
FIG. 5 is a graph of the effect of artificial inoculation of transgenic maize of the invention comprising transgenic maize event LP007-3 in a Helicoverpa armigera field;
FIG. 6 is a plot of the field effect of transgenic corn of the invention comprising transgenic corn event LP007-3 under naturally occurring conditions of dichocrocis punctiferalis;
FIG. 7 is a field effect plot of transgenic maize of the invention comprising transgenic maize event LP007-3 under conditions naturally occurring with Spodoptera exigua;
FIG. 8 is a graph of the field effect of transgenic maize of the invention comprising transgenic maize event LP007-3 under conditions in which spodoptera frugiperda occurs naturally.
Fig. 9 is a field effect plot of the recommended spray concentration for a field sprayed with a 4-fold dose of glyphosate herbicide for transgenic corn of the invention comprising transgenic corn event LP 007-3.
Detailed Description
The present invention will be described in further detail below with reference to examples. The features and advantages of the present invention will become more apparent from the exemplary descriptions.
The word "exemplary" is used exclusively herein to mean "serving as an example, embodiment, or illustration. Any embodiment described herein as "exemplary" is not necessarily to be construed as preferred or advantageous over other embodiments.
In addition, the technical features related to the different embodiments of the present invention described below may be combined with each other as long as they do not conflict with each other.
The following embodiments further illustrate the technical scheme of the nucleic acid sequence for detecting the maize plant LP007-3 and the detection method thereof.
EXAMPLE 1 cloning and transformation
1.1 cloning of vectors
Recombinant expression vector pLP007 (shown in FIG. 2) was constructed using standard gene cloning techniques. The vector pLP007 comprises 4 transgenic expression cassettes in tandem, the first expression cassette consisting of the figwort mosaic virus 35s promoter (prFMV), operably linked to the intron of the heat shock protein gene HSP70 protein of maize (iZmHSP70), operably linked to the maize chloroplast transit peptide 2(spZmCTP2), operably linked to the insect resistant Cry2Ab protein of bacillus thuringiensis (ccy 2Ab), operably linked to the transcriptional terminator of nopaline synthase (tNos); the second expression cassette consists of tandem repeat maize ubiquitin gene promoter ubi (przmubi) containing enhancer region operably linked to insect resistance gene Vip3Aa (cVip3Aa) of bacillus thuringiensis operably linked to the 9 th intron of maize phosphoenolpyruvate carboxykinase gene operably linked to the 35s RNA sequence of cauliflower mosaic virus genome; the third expression cassette consists of a cauliflower mosaic virus 35S promoter (pr35S), operably linked to the 5' untranslated leader sequence (lWtCab) of the wheat chloroplast a/b binding protein, operably linked to the rice actin gene 1 intron (iOsAct1), operably linked to the insect resistant Cry1Ab protein (cccry 1Ab) of bacillus thuringiensis, and operably linked to the terminator (tin2) of the benzenesulfonamide inducible gene 2; the fourth expression cassette consists of the rice actin 1 promoter (prOsAct1), operably linked to the arabidopsis thaliana EPSPS chloroplast transit peptide (spAtCTP2), operably linked to the glyphosate tolerant 5-enol-pyruvylshikimate-3-phosphate synthase (cEPSPS) of the agrobacterium CP4 strain, and operably linked to the nopaline synthase transcription terminator (tNos). The vector pLP007 was transformed into Agrobacterium LBA4404 (Invitrogen, Chicago, USA; Cat. No.: 18313-.
1.2 plant transformation
Transformation was performed by conventional Agrobacterium infection and the aseptically cultured maize embryos were co-cultured with Agrobacterium as described in example 1.1 to transfer the T-DNA of the constructed recombinant expression vector pLP007 into the maize genome to produce transgenic maize event LP 007-3.
For Agrobacterium-mediated transformation of maize, briefly, immature embryos are isolated from maize and the embryos are contacted with an Agrobacterium suspension, wherein the Agrobacterium is capable of delivering the nucleic acid sequence of the cry1Ab, cry2Ab, vip3Aa genes and the nucleic acid sequence of the epsps gene to at least one cell of one of the embryos (step 1: the infection step), in which the embryos are specifically immersed in an Agrobacterium suspension (OD660 ═ 0.4-0.6), an infection medium (MS salts 4.3g/L, MS vitamins, casein 300mg/L, sucrose 68.5g/L, glucose 36g/L, Acetosyringone (AS)40mg/L, 2, 4-dichlorophenoxyacetic acid (2,4-D)1mg/L, pH5.3) to initiate inoculation, the embryos are co-cultured with Agrobacterium for a period of time (3 days) (step 2: co-culturing step). The young embryos are cultured on a solid medium (MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 20g/L, glucose 10g/L, Acetosyringone (AS)100mg/L, 2, 4-dichlorophenoxyacetic acid (2,4-D)1mg/L, agar 8g/L, pH5.8) after the infection step. After this co-cultivation phase, there may be an optional "recovery" step. In the "recovery" step, at least one antibiotic known to inhibit the growth of Agrobacterium (cefamycin) is present in the recovery medium (MS salts 4.3g/L, MS vitamins, casein 300mg/L, sucrose 30g/L, 2, 4-dichlorophenoxyacetic acid (2,4-D)1mg/L, plant gel 3g/L, pH5.8) without the addition of a selection agent for plant transformants (step 3: recovery step). In particular, young embryos are cultured on solid medium with antibiotics but no selective agent to eliminate Agrobacterium and provide a recovery period for the infected cells. Next, the inoculated immature embryos are cultured on a medium containing a selection agent (N- (phosphonomethyl) glycine) and the growing transformed calli are selected (step 4: selection step). Specifically, the immature embryos are cultured on a selective solid medium (MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, N- (phosphonomethyl) glycine 0.25mol/L, 2, 4-dichlorophenoxyacetic acid (2,4-D)1mg/L, plant gel 3g/L, pH5.8) with a selective agent, resulting in selective growth of transformed cells. Then, the callus is regenerated into a plant (step 5: regeneration step), and specifically, the callus grown on the medium containing the selection agent is cultured on a solid medium (MS differentiation medium and MS rooting medium) to regenerate the plant.
The resistant callus obtained by screening was transferred to the MS differentiation medium (MS salt 4.3g/L, MS vitamin, casein 300mg/L, sucrose 30g/L, 6-benzyladenine 2mg/L, N- (phosphonomethyl) glycine 0.125mol/L, plant gel 3g/L, pH5.8), and cultured and differentiated at 25 ℃. The differentiated plantlets were transferred to the MS rooting medium (MS salts 2.15g/L, MS vitamins, casein 300mg/L, sucrose 30g/L, indole-3-acetic acid 1mg/L, agar 8g/L, pH5.8), cultured at 25 ℃ until the height was about 10cm, and transferred to a greenhouse for fructification. In the greenhouse, the culture was carried out at 28 ℃ for 16 hours and at 20 ℃ for 8 hours each day.
1.3 identification and screening of transgenic events
A total of 1500 independent transgenic T0 individuals were generated.
Example 2 detection of transgenic maize event LP007-3 with TaqMan
Approximately 100mg of leaf discs of transgenic maize event LP007-3 were sampled, genomic DNA was extracted using the DNeasy plant Maxi Kit from Qiagen, and copy numbers of cry1Ab, cry2Ab, vip3Aa, and epsps were determined by Taqman probe fluorescent quantitative PCR. Meanwhile, wild corn plants are used as a control, and detection and analysis are carried out according to the method. The experiment was repeated 3 times and the average was taken.
The specific method comprises the following steps:
step 11, taking 100mg of leaves of transgenic corn event LP007-3, grinding the leaves into homogenate by using liquid nitrogen in a mortar, and taking 3 samples for each time;
step 12, extracting the genomic DNA of the sample by using DNeasy Plant Mini Kit of Qiagen, and referring to the product specification of the specific method;
step 13, measuring the genomic DNA concentration of the sample by using NanoDrop 2000(Thermo Scientific);
step 14, adjusting the genomic DNA concentration of the sample to the same concentration value, wherein the concentration value range is 80-100 ng/mu l;
step 15, identifying the copy number of the sample by adopting a Taqman probe fluorescent quantitative PCR method, taking the sample with known copy number after identification as a standard substance, taking the sample of a wild-type corn plant as a control, repeating each sample for 3 times, and taking the average value of the samples; the fluorescent quantitative PCR primer and the probe sequence are respectively as follows:
the following primers and probes were used to detect the cry1Ab gene sequence:
primer 1: TGGGAGGACGGAATGATATTG is shown as SEQ ID NO:16 in the sequence list;
primer 2: AACTCGTCCGTGAGCATCATC is shown as SEQ ID NO:17 in the sequence list;
1, probe 1: AACTCCGCGCTGCGATGAATCC is shown as SEQ ID NO:18 in the sequence list;
the following primers and probes were used to detect the cry2Ab gene sequence:
primer 3: GGACAGAGGCACCGCATT is shown as SEQ ID NO:19 in the sequence list;
primer 4: CGGGTCTGCAAGCAAACG is shown as SEQ ID NO:20 in the sequence list;
and (3) probe 2: TCCACTTGGCGGTTGAACTCCTCC is shown as SEQ ID NO:21 in the sequence list;
the following primers and probes were used to detect the vip3Aa gene sequence:
primer 5: GGTGTCCTCGTAGTGGATGT is shown as SEQ ID NO. 22 in the sequence table;
primer 6: TGATCCAGTACACCGTGAAG is shown as SEQ ID NO. 23 in the sequence list;
and 3, probe 3: TTCAGGTGAATCGATGGC is shown as SEQ ID NO. 24 in the sequence table;
the following primers and probes were used to detect the epsps gene sequence:
primer 7: GCAAATCCTCTGGCCTTTCC is shown as SEQ ID NO. 25 in the sequence list;
primer 8: TGAAGGACCGGTGGGAGAT is shown as SEQ ID NO:26 in the sequence list;
and 4, probe 4: CGTCCGCATTCCCGGCGA is shown as SEQ ID NO:27 in the sequence list;
the PCR reaction system is
Figure BDA0002919315000000261
The 50 × primer/probe mixture contained 45 μ L of each primer at a concentration of 1mM, 50 μ L of probe at a concentration of 100 μ M and 860 μ L of 1 × TE buffer and was stored in amber tubes at 4 ℃.
The PCR reaction conditions are
Figure BDA0002919315000000262
Data were analyzed using SDS2.3 software (applied biosystems) to obtain a single copy of transgenic maize event LP 007-3.
Example 3 transgenic maize event LP007-3 detection
3.1 extraction of genomic DNA
DNA extraction was performed according to the conventionally used CTAB (cetyltrimethylammonium bromide) method: grinding 2 g of tender leaves of transgenic maize event LP007-3 in liquid nitrogen into powder, adding 0.5mL of DNA preheated at 65 ℃ to extract CTAB Buffer [20g/L CTAB, 1.4M NaCl, 100mM Tris-HCl, 20mM EDTA (ethylene diamine tetraacetic acid) ], adjusting the pH to 8.0 with NaOH, fully mixing uniformly, and extracting at 65 ℃ for 90 min; adding 0.5 times of phenol and 0.5 times of chloroform, reversing and mixing evenly; centrifuging at 12000rpm for 10 min; sucking supernatant, adding 1 volume of isopropanol, gently shaking the centrifuge tube, and standing at-20 deg.C for 30 min; centrifuging at 12000rpm for 10 min; collecting DNA to the bottom of the tube; discarding the supernatant, washing the precipitate with 0.5mL of 70% ethanol; centrifuging at 12000rpm for 5 min; vacuum pumping or drying in a super clean bench; the DNA pellet was dissolved in an appropriate amount of TE buffer (10mM Tris-HCl, 1mM EDTA, pH 8.0) and stored at-20 ℃.
3.2 analysis of flanking DNA sequences
And (3) carrying out concentration measurement on the extracted DNA sample so that the concentration of the sample to be measured is between 80 and 100 ng/. mu.L. The genomic DNA was digested with the selected restriction enzymes SpeI, PstI, BssHII (5 '-end analysis) and SacI, KpnI, XmaI, NheI (3' -end analysis), respectively. To each digestion system were added 26.5. mu.L of genomic DNA, 0.5. mu.L of the above-selected restriction enzyme and 3. mu.L of digestion buffer, and the mixture was digested at an appropriate temperature for 1 hour. After the enzyme digestion is finished, 70 mu L of absolute ethyl alcohol is added into the enzyme digestion system, ice bath is carried out for 30min, the centrifugal treatment is carried out for 7min at the rotating speed of 12000rpm, the supernatant is discarded and dried, and then 8.5 mu L of double distilled water (ddH) is added2O), 1. mu.L of 10X T4 Buffer and 0.5. mu. L T4 ligase were ligated overnight at 4 ℃. By a series of nested guidesThe 5 'and 3' transgene/genomic DNA was isolated by PCR amplification. Specifically, the primer combination for separating 5' transgene/genome DNA comprises SEQ ID NO 13 and SEQ ID NO 34 as first primers, SEQ ID NO 35 and SEQ ID NO 36 as second primers, and SEQ ID NO 13 as sequencing primers. The primer combination for separating the 3' transgene/genome DNA comprises SEQ ID NO 15 and SEQ ID NO 37 as first primers, SEQ ID NO 38 and SEQ ID NO 39 as second primers, SEQ ID NO 15 as a sequencing primer, and the PCR reaction conditions are shown in Table 3.
The obtained amplicons were electrophoresed on a 2.0% agarose Gel to separate the PCR reactions, followed by separation of the fragment of interest from the agarose matrix using QIAquick Gel extraction kit (catalog # 28704, Qiagen inc, Valencia, CA). The purified PCR products are then sequenced (e.g., ABI prism 377, PE Biosystems, Foster City, CA) and analyzed (e.g., DNASTAR sequence analysis software, DNASTAR inc., Madison, WI).
The 5 'and 3' flanking sequences and junction sequences were confirmed using standard PCR methods. The 5' flanking and junction sequences may be confirmed using SEQ ID NO 8 or 12 in combination with SEQ ID NO 9, 13 or 34. The 3' flanking and junction sequences may be confirmed using SEQ ID NO 11 or 14 in combination with SEQ ID NO 10, 15 or 37. The PCR reaction system and amplification conditions are shown in tables 2 and 3. One skilled in the art will appreciate that other primer sequences may also be used to confirm the flanking and junction sequences.
DNA sequencing of the PCR products provides DNA that can be used to design other DNA molecules that serve as primers and probes for the identification of maize plants or seeds derived from transgenic maize event LP 007-3.
It was found that the maize genomic sequence shown at nucleotides 1-1068 of SEQ ID NO:5 flanked the right boundary of the transgenic maize event LP007-3 insert (the 5 'flanking sequence), and that the maize genomic sequence shown at nucleotides 17184-18257 of SEQ ID NO:5 flanked the left boundary of the transgenic maize event LP007-3 insert (the 3' flanking sequence). The 5 'junction sequence is set forth in SEQ ID NO 1 and the 3' junction sequence is set forth in SEQ ID NO 2.
3.3 PCR conjugation assay
The adaptor sequence is a relatively short polynucleotide molecule that is a novel DNA sequence that is diagnostic for the DNA of transgenic maize event LP007-3 when detected in a polynucleic acid detection assay. The binding sequence of SEQ ID NO. 1 consists of 11bp each on one side of the T-DNARB region insertion site of the transgenic maize event LP007-3 and the maize genomic DNA insertion site, and the binding sequence of SEQ ID NO. 2 consists of 11bp each on the other side of the T-DNARB region insertion site of the transgenic maize event LP007-3 and the maize genomic DNA insertion site. Longer or shorter polynucleotide joining sequences may be selected from SEQ ID NO. 3 or SEQ ID NO. 4. The junction sequences (5 'junction region SEQ ID NO:1, and 3' junction region SEQ ID NO:2) are useful in DNA detection methods as DNA probes or as DNA primer molecules. The junction sequences SEQ ID NO 6 and SEQ ID NO 7 are also novel DNA sequences in transgenic maize event LP007-3 that can also be used as DNA probes or as DNA primer molecules to detect the presence of transgenic maize event LP007-3 DNA. The SEQ ID NO. 6 (nucleotides 1069-1560 of SEQ ID NO. 3) spanned the LP007 construct DNA sequence and the tNOs transcription termination sequence, and the SEQ ID NO. 7 (nucleotides 1-190 of SEQ ID NO. 4) spanned the tNOs transcription termination sequence and the LP007 construct DNA sequence.
In addition, an amplicon is generated by using primers from at least one of SEQ ID NO 3 or SEQ ID NO 4 that when used in a PCR method produce a diagnostic amplicon of transgenic maize event LP 007-3.
Specifically, a PCR product is generated from the 5 'end of the transgenic insert, which PCR product is a portion of genomic DNA comprising the 5' end of the T-DNA insert flanking the genome of the plant material derived from transgenic maize event LP 007-3. This PCR product contained SEQ ID NO 3. For PCR amplification, primer 5(SEQ ID NO:8) hybridizing to the genomic DNA sequence flanking the 5' end of the transgene insert sequence, and primer 6(SEQ ID NO:9) at the transgene tNOs transcription termination sequence, are designed to pair with it.
A PCR product comprising a portion of genomic DNA flanking the 3 'end of the T-DNA insert in the genome of plant material derived from transgenic maize event LP007-3 is generated from the 3' end of the transgenic insert. This PCR product contained SEQ ID NO 4. For PCR amplification, primer 8(SEQ ID NO:11) hybridizing to the genomic DNA sequence flanking the 3 'end of the transgene insert was designed, along with primer 7(SEQ ID NO:10) pairing to the tNos transcription termination sequence located at the 3' end of the insert.
The DNA amplification conditions set forth in tables 3 and 4 can be used in the PCR zygosity assay described above to produce a diagnostic amplicon for transgenic maize event LP 007-3. Detection of amplicons can be performed by using a Stratagene Robocycle, MJ Engine, Perkin-Elmer9700, or Eppendorf MastercycleGradien thermocycler, etc., as shown in Table 3, or by methods and equipment known to those skilled in the art.
TABLE 3 PCR steps and reaction mixture conditions for 5' transgene insert/genome junction region identification for transgenic maize event LP007-3
Figure BDA0002919315000000291
TABLE 4 Perkin-Elmer9700 thermal cycler conditions
Figure BDA0002919315000000301
Mix gently, and if there is no incubation cap on the thermocycler, 1-2 drops of mineral oil can be added above each reaction. PCR was performed on a Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer9700 (Perkin Elmer, Boston, MA) or Eppendorf Mastercycler Gradient (Eppendorf, Hamburg, Germany) thermocycler using the following cycling parameters (Table 3). The MJ Engine or Eppendorf Mastercycler Gradient thermocycler should operate in a computational mode. The Perkin-Elmer9700 thermal cycler was operated with a ramp speed set to a maximum value.
The experimental results show that: primers 11 and 12(SEQ ID NOS: 8 and 9) which, when used in a PCR reaction of transgenic maize event LP007-3 genomic DNA, produced an amplification product of a 1646bp fragment, and when used in a PCR reaction of untransformed maize genomic DNA and non-LP 007-3 maize genomic DNA, NO fragment was amplified; primers 13 and 14(SEQ ID NOS: 10 and 11) produced an amplification product of a 1333bp fragment when used in a PCR reaction of transgenic maize event LP007-3 genomic DNA, and NO fragment was amplified when used in a PCR reaction of untransformed maize genomic DNA and non-LP 007-3 maize genomic DNA.
PCR zygosity assays can also be used to identify whether the material derived from transgenic maize event LP007-3 is homozygous or heterozygous. Primer 15(SEQ ID NO:12), primer 16(SEQ ID NO:13) and primer 17(SEQ ID NO:14), or primer 16(SEQ ID NO:13), primer 17(SEQ ID NO:14) and primer 18(SEQ ID NO:15) were used in the amplification reaction to generate a diagnostic amplicon of transgenic maize event LP 007-3. The DNA amplification conditions set forth in tables 5 and 6 can be used in the zygosity assay described above to produce a diagnostic amplicon for transgenic maize event LP 007-3.
TABLE 5 reaction solution for measuring adhesiveness
Figure BDA0002919315000000302
Figure BDA0002919315000000311
TABLE 6 determination of bondability Perkin-Elmer9700 thermal cycler conditions
Figure BDA0002919315000000312
PCR was performed on a Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer9700 (Perkin Elmer, Boston, MA) or Eppendorf MastercycleGradient (Eppendorf, Hamburg, Germany) thermocycler using the following cycling parameters (Table 5). The MJ Engine or Eppendorf Mastercycler Gradient thermocycler should operate in a computational mode. The Perkin-Elmer9700 thermal cycler was operated with a ramp speed set to a maximum value.
In the amplification reaction, the biological sample containing the template DNA contains DNA diagnostic for the presence of transgenic maize event LP007-3 in the sample. Or the reaction will produce two different DNA amplicons from a biological sample containing DNA derived from the maize genome that is heterozygous for the corresponding allele of the inserted DNA present in transgenic maize event LP 007-3. These two different amplicons would correspond to a first amplicon derived from the wild-type maize genomic locus and a second amplicon diagnostic for the presence of the transgenic maize event LP007-3 DNA. A maize DNA sample that produces only a single amplicon corresponding to the second amplicon described for the heterozygous genome can be diagnostically determined for the presence of transgenic maize event LP007-3 in the sample, and the sample is produced from maize seeds that are homozygous for the allele corresponding to the inserted DNA present in the transgenic maize plant LP 007-3. It is noted that the primer pair for transgenic maize event LP007-3 was used to generate an amplicon diagnostic for transgenic maize event LP007-3 genomic DNA. These primer pairs include, but are not limited to, primers 11 and 12(SEQ ID NOS: 8 and 9), and primers 13 and 14(SEQ ID NOS: 10 and 11), which are used in the DNA amplification method. In addition, a control primer 9 and 10(SEQ ID NO:28 and SEQ ID NO:29) for amplification of the maize endogenous gene was included as an internal standard of reaction conditions. Analysis of a sample of a DNA extract of transgenic maize event LP007-3 should include a control of positive tissue DNA extract of transgenic maize event LP007-3, a control of negative DNA extract from non-transgenic maize event LP007-3, and a negative control that does not contain a template maize DNA extract. In addition to these primer pairs, any primer pair from SEQ ID NO 3 or SEQ ID NO 4, or the complement thereof, which when used in a DNA amplification reaction produces an amplicon comprising SEQ ID NO 1 or SEQ ID NO 2, respectively, that is diagnostic for tissue derived from transgenic event maize plant LP007-3 can be used. The DNA amplification conditions illustrated in tables 2-5 can be used to generate diagnostic amplicons of transgenic maize event LP007-3 using the appropriate primer pairs. An extract putatively containing corn plant or seed DNA comprising transgenic corn event LP007-3, or a product derived from transgenic corn event LP007-3, which when tested in a DNA amplification method produces an amplicon diagnostic for transgenic corn event LP007-3, can be used as a template for amplification to determine the presence or absence of transgenic corn event LP 007-3.
Example 4 detection of transgenic maize event LP007-3 by Southern blot hybridization
4.1 DNA extraction for Southern blot hybridization
Southern blot analysis was performed using transformation events homozygous for the T4, T5 generations. Approximately 5 to 10g of plant tissue was ground in liquid nitrogen using a mortar and pestle. Plant tissues were resuspended in 12.5mL extraction buffer a (0.2MTris pH 8.0, 50mM EDTA, 0.25M NaCl, 0.1% v/v β -mercaptoethanol, 2.5% w/v polyvinyl-pyrrolidone) and centrifuged at 4000rpm for 10 minutes (2755 g). After discarding the supernatant, the pellet was resuspended in 2.5mL extraction buffer B (0.2M Tris pH 8.0, 50mM EDTA, 0.5M NaCl, 1% v/v β -mercaptoethanol, 2.5% w/v polyvinyl-pyrrolidone, 3% sarcosyl, 20% ethanol) and incubated at 37 ℃ for 30 minutes. During the incubation period, the sample was mixed once with a sterile loop. After incubation, an equal volume of chloroform/isoamyl alcohol (24:1) was added, gently mixed by inversion, and centrifuged at 4000rpm for 20 minutes. The aqueous layer was collected and centrifuged at 4000rpm for 5 minutes after adding 0.54 volume of isopropanol to precipitate the DNA. The supernatant was discarded and the DNA pellet resuspended in 500. mu.L TE. To degrade any RNA present, DNA was incubated with 1. mu.L of 30mg/mL RNAaseA for 30 minutes at 37 ℃, centrifuged at 4000rpm for 5 minutes, and the DNA was precipitated by centrifugation at 14000rpm for 10 minutes in the presence of 0.5 volumes of 7.5M ammonium acetate and 0.54 volumes of isopropanol. After discarding the supernatant, the pellet was washed with 500. mu.L of 70% by mass ethanol, dried and resuspended in 100. mu.L of TE.
4.2 restriction enzyme digestion
The DNA concentration is quantified using a spectrophotometer or fluorometer (using 1 XTAE and GelRED dyes). Mu.g of DNA was digested in 100. mu.L reaction. The genomic DNA was digested with the restriction enzymes BamHI and HindIII, respectively, and with the partial sequences of Cry2Ab and EPSPS on the T-DNA as probes, and with the restriction enzymes EcoRV and HindIII, respectively, and with the partial sequences of Cry1Ab and Vip3Aa on the T-DNA as probes. For each enzyme, the digests were incubated overnight at the appropriate temperature. The sample was spun using a vacuum centrifugal evaporator concentrator (speed vacuum) to reduce the volume to 30 μ L.
4.3 gel electrophoresis
Bromophenol blue loading dye was added to each sample from example 4.2, and each sample was loaded onto a 0.7% agarose gel containing ethidium bromide, electrophoresed in TBE electrophoresis buffer, and the gel was electrophoresed overnight at 20 volts.
The gel was washed in 0.25M HCl for 15 minutes to depurinate the DNA, then washed with water. Southern blot hybridization was set as follows: in the tray, 20 sheets of thick dry blotting paper were placed, and 4 sheets of thin dry blotting paper were placed thereon. 1 piece of thin blotting paper was pre-wetted in 0.4M NaOH and placed on the stack, followed by 1 piece of Hybond-N + transfer membrane pre-wetted in 0.4M NaOH (Amersham Pharmacia Biotech, # RPN 303B). The gel is placed on top to ensure that there are no air bubbles between the gel and the membrane. 3 additional pre-soaked blotting papers were placed on top of the gel and the buffer tray was filled with 0.4M NaOH. The gel stack and buffer tray were connected with wicks pre-soaked in 0.4M NaOH to transfer the DNA to the membrane. The DNA transfer was carried out at room temperature for about 4 hours. After transfer, the Hybond membrane was rinsed in2 XSSC for 10 seconds and the DNA was bound to the membrane by UV cross-linking.
4.4 hybridization
PCR was used to amplify appropriate DNA sequences for probe preparation. The DNA probe is SEQ ID NO. 30, SEQ ID NO. 31, SEQ ID NO. 32 and SEQ ID NO. 33, or is homologous or complementary with the above sequences. 25ng of the probe DNA was boiled in 45. mu.L of TE for 5 minutes, placed on ice for 7 minutes, and then transferred to a Rediprime II (Amersham Pharmacia Biotech, # RPN1633) tube. To Rediprime tubes after addition of 5. mu.l of 32P-labeled dCTP, the probe was incubated at 37 ℃ for 15 minutes. The probe was purified by microcentrifugation of a G-50 column (Amersham Pharmacia Biotech, #27-5330-01) according to the manufacturer's instructions to remove unincorporated dNTPs. Probe activity was measured using a scintillation counter. By preheathing Church prehybridization with 20mL (500mM Na) at 65 deg.C3P041mM EDTA, 7% SDS, 1% BSA) wet the Hybond membrane for 30 minutes, pre-hybridizing the Hybond membrane. The labeled probe was boiled for 5 minutes and placed on ice for 10 minutes. The appropriate amount of probe (1 million counts per 1mL of prehybridization buffer) was added to the prehybridization buffer and hybridization was performed overnight at 65 ℃. The following day, the hybridization buffer was discarded, and after rinsing with 20mL of Church rinse solution 1(40mM Na3P04, 1mM EDTA, 5% SDS, 0.5% BSA), the membrane was washed in 150mL of Church rinse solution 1 at 65 ℃ for 20 minutes. Rinse solution 2 with Church (40mM Na)3P041mM EDTA, 1% SDS) was repeated 2 times. The membrane is exposed to a phosphor screen or X-ray film to detect the location of probe binding.
Two control samples were included on each Southern: (1) DNA from a negative (untransformed) isolate, which is used to identify any endogenous maize sequence that can hybridize to the element-specific probe; (2) DNA from a positive isolate, into which HindIII digested pLP007 was introduced in an amount equivalent to one copy number based on probe length, to demonstrate the sensitivity of the experiment in detecting a single gene copy within the maize genome.
The hybridization data provide corroborative evidence supporting TaqManTMPCR analysis, i.e., maize plant LP007-3 contained a single copy of Cry1Ab, Cry2Ab, Vip3Aa, and the EPSPS genes. Using Cry1Ab probe, EcoRV and HindIII were digested to generate single bands of about 14.1kb and 12.7kb in size, respectively; using this Cry2Ab probe, BamHI and HindIII were digested to generate single bands of about 3.9kb and 6.3kb in size, respectively; using the Vip3Aa probe, EcoRV and HindIII were digested to give single bands of approximately 14.1kb and 12.7kb in size, respectively; using this EPSPS probe, BamHI and HindIII were digested to generate single bands of approximately 15.9kb and 12.7kb in size, respectively. This indicates that one copy each of Cry1Ab, Cry2Ab, Vip3Aa and EPSPS is present in maize transformationEvent LP 007-3.
Example 5 insect resistance assay
5.1 bioassay of maize plant LP007-3
Transgenic maize event LP007-3 and wild type maize plant (non-transgenic, transformed receptor control (CK-))2 plants were bioassayed against asian maize borer (ostrinia californicalis), Spodoptera frugiperda (Spodoptera frugiperda), dichocrocis punctifera (Conogethespastialis), athetia lepigone (Athetisepaigone), oriental armyworm (Mythimnaseata), prodenia litura (Spodoptera litura), Helicoverpa armigera (Helicoverpa armigera) and Spodoptera exigua (Spodoptera exigua), respectively, as follows:
taking fresh leaves (period V3-V4) of 2 transgenic corn events LP007-3 and wild type corn plants (non-transgenic, transformation receptor control (CK-)) respectively, washing the fresh leaves with sterile water, sucking the water on the leaves with gauze, removing leaf veins of the corn leaves, simultaneously cutting the corn leaves into long strips of about 1cm multiplied by 3cm, taking 1-3 (determining the number of the leaves according to the insect appetite) cut long strips, putting the long strips on filter paper at the bottom of a circular plastic culture dish, wetting the filter paper with distilled water, putting 10 artificially-fed first-hatched larvae in each culture dish, covering the insect test culture dish after covering, and performing a light cycle (light/dark) 16 at the temperature of 26-28 ℃, the relative humidity of 70% -80%: and 8, counting the result after the mixture is placed for 5 days. The mortality was counted and the level of resistance was identified by correcting the mortality (%) (1-survival/number of vaccinated-wild type control mortality)/(1-wild type control mortality) x 100% with the results shown in table 7 and the in vitro resistance effect shown in figure 3.
TABLE 7 insect resistance bioassay for transgenic corn event LP 007-3-mortality (%)
Figure BDA0002919315000000351
5.2 field Effect of transgenic maize event LP007-3
(1) Corn borer
The insect-resistant herbicide-tolerant corn LP007-3 is used for carrying out field inoculation verification on the resistance of a main target pest namely Asian corn borer. Inoculating insects at the 4-6 leaf stage and the silking stage (silking of female ear is 3-5cm), each for 2 times, 50 times each time, and the interval time of the two times is one week. And after inoculating 14d insects in the heart leaf period, investigating the feeding condition of the upper leaves of the corn plants by the Asiatic corn borers one by one, and recording the feeding leaf grade of the Asiatic corn borers. After inoculation in the spinning period, the damage degree of the female ear and the damage condition of the plant before harvesting comprise the damage length of the female ear of the corn, the number of wormholes, the length of a tunnel of the wormhole, the age of the living larva and the number of the living larva. Evaluation was performed using "heart leaves as damage grade grading criteria" as an index, and the results are shown in fig. 4 and table 12. The ears are dissected and investigated in the silking period, and the statistical result is shown in a chart 13.
TABLE 8 grading Standard of the degree of damage of Asiatic corn borers to the corn leaves
Grade of eating leaves Description of the symptoms
1 The leaves are not damaged, or only the leaves are provided with needle-like (less than or equal to 1mm) insect holes
2 Only a few bug holes with the spring hole size (less than or equal to 5mm) are arranged on the individual leaves
3 A small number of leaves have bug holes with spring hole size (less than or equal to 5mm)
4 The upper part of the individual leaf is carved (less than or equal to 10mm)
5 A small number ofThe leaves are carved (less than or equal to 10mm)
6 The partial blade is provided with a notch (less than or equal to 10mm)
7 The part of each leaf is eaten, and a small number of leaves are provided with large scale (less than or equal to 10mm)
8 A small number of leaves are eaten, and a large number of notches (less than or equal to 10mm) are arranged on part of the leaves
9 Most of the leaves are eaten
TABLE 9 evaluation of resistance of corn to Asiatic corn borer
Average value of leaf eating grade in heart leaf stage Level of resistance
1.0-2.9 High Resistance (HR)
3.1-4.9 Anti (R)
5.0-6.9 Moderate (MR)
7.0-8.9 Feeling of
9.0 Feeling of height
TABLE 10 grading Standard of the extent of corn ear stage injury by Asiatic corn borer
Figure BDA0002919315000000361
Figure BDA0002919315000000371
TABLE 11 evaluation criteria for resistance to Asiatic corn borer in corn ear stage
Average damage grade of female ear Type of resistance
1-2.0 High resistance HR
2.1-3.0 anti-R
3.1-5.0 anti-MR
5.1-7.0 Feeling S
≥7.1 High-sensitivity HS
TABLE 12 results of resistance of transgenic maize event LP007-3 heart leaf stage to Ostrinia furnacalis Guenee,
item/plant LP007-3 CK-
Average leaf eating grade 1.05 8.1
Level of resistance Gao Kang Feeling of height
TABLE 13 resistance results of transgenic maize event LP007-3 to Asiatic corn borer during the silking phase
Item/plant LP007-3 CK-
Percentage of damage to ear (%) 0 100
Survival number of larvae 0 15
Tunnel length (cm) 0 2.1
Grade of damage to ears 0 6.5
Level of resistance Gao Kang Feeling of
The results show that: the transgenic maize event LP007-3 has a better level of resistance to asian corn borers, both in the heart-leaf stage and in the silking stage; leaf feeding grade mean for transgenic maize event LP007-3 was significantly lower at the heart leaf stage than for the transformed receptor control. In the silking phase, the ear damage rate, larval survival number, tunnel length and ear damage level of transgenic maize event LP007-3 were significantly lower than those of the transformed receptor control.
(2) Oriental mythimna
The experimental design and method of testing is essentially consistent with the evaluation of resistance to asian corn borer as described above. Except that the artificial inoculation is carried out only in the heart-leaf stage of the corn (the corn plants develop to the 4-6 leaf stage of the development), the inoculation is carried out for 2 times, and about 20 heads of the two-year larvae are inoculated to the heart-leaf stage of each corn. And 3 days after the inoculation, carrying out second inoculation, wherein the inoculation quantity is the same as that of the first inoculation. After 14 days of inoculation, the degree of damage of corn leaves by oriental armyworm was investigated. The average value of the level of the eastern armyworms to the corn leaves (the level of eating leaves) of each cell was calculated according to the degree of the corn leaves to be damaged by the eastern armyworms, the judgment criteria thereof are shown in table 14, and then the resistance level of the corn to the eastern armyworms was judged according to the criteria of table 15. The results of resistance to oriental armyworm at the heart-leaf stage of transgenic maize event LP007-3 are shown in table 16.
TABLE 14 grading Scale of the degree of corn leaf injury by Oriental mythimna
Grade of damage to ears Description of the symptoms
1 The leaves are not damaged, or only the leaves are provided with needle-like (less than or equal to 1mm) insect holes
2 Only a few bug holes with the spring hole size (less than or equal to 5mm) are arranged on the individual leaves
3 A small number of leaf blades are provided with wormholes with spring hole sizes (less than or equal to 5mm)
4 The upper part of each blade is carved (less than or equal to 10mm)
5 A small number of blades are provided with notches (less than or equal to 10mm)
6 The partial blade is provided with a notch (less than or equal to 10mm)
7 The part of each leaf is eaten, and a small number of leaves are provided with large scale (less than or equal to 10mm)
8 A small number of leaves are eaten, and a large number of notches (less than or equal to 10m) are arranged on part of the leaves
9 Most of the leaves are eaten
TABLE 15 evaluation criteria for resistance of corn to Oriental myxozoa
Figure BDA0002919315000000381
TABLE 16 resistance results of transgenic maize event LP007-3 heart leaf stage to Oriental mythimna
Item/plant LP007-3 CK-
Average leaf eating grade 1.02 78
Level of resistance Gao Kang Feeling of
The results show that: transgenic maize event LP007-3 has a better level of resistance to oriental armyworm, and the notch ratio and leaf feeding grade of transgenic maize event LP007-3 are both significantly lower than the transformed receptor control (CK-).
(3) Bollworm
The experimental design and method of testing is essentially consistent with the evaluation of resistance to asian corn borer as described above. The difference is that the artificial inoculation is carried out only in the spinning stage of the corn for 2 times, about 20 newly hatched larvae which are artificially fed are inoculated into each corn filament, and after 3 days, the second inoculation is carried out, and the number of the inoculated insects is the same as that of the first inoculation. After 14-21 days of inoculation, the damage rate of the ears, the number of surviving larvae per ear and the damage length of the ears are investigated plant by plant. The investigation is started 14 days after the inoculation, if the pest level of the negative control material (CK-) reaches a feeling or a high feeling, the negative control material is considered to be effective, and if the negative control material (CK-) does not reach a proper delay investigation but does not reach the corresponding level 21 days after the inoculation, the negative control material is considered to be ineffective. Calculating the average damage level of the cotton bollworms in the ear stage of the corn to the female ears in each cell according to the damage rate of the female ears, the number of the surviving larvae and the damage length (cm) of the female ears, wherein the judgment standard is shown in the table 17, and then judging the resistance level of the cotton bollworms in the ear stage of the corn according to the standard in the table 18. The results of resistance to Helicoverpa armigera during transgenic maize event LP007-3 silking are shown in FIG. 5, Table 19.
TABLE 17 grading Standard of the degree of damage to ears of corn by Cotton bollworm
Grade of damage to ears Description of the symptoms
0 The ear of the female ear is not damaged
1 Only the filament is damaged
2 Damage to ear tip of 1cm
3+ When the damage under the top of the spike is increased by 1cm, the corresponding damage level is increased by 1 level
…N
TABLE 18 evaluation of resistance of corn ears to bollworms
Figure BDA0002919315000000391
Figure BDA0002919315000000401
TABLE 19 resistance results of transgenic maize event LP007-3 during the silking phase to Helicoverpa armigera
Item/plant LP007-3 CK-
Percentage of damage to ear (%) 0 100
Survival number of larvae 0 16
Tunnel length (cm) 0 2.4
Grade of damage to ears 0 6.7
Level of resistance Gao Kang Feeling of
The results show that: transgenic maize event LP007-3 has a better level of resistance to cotton bollworm, and the ear damage rate, larval survival number, ear damage length, and ear damage grade of transgenic maize event LP007-3 are significantly lower than transformation receptor control (CK-).
(4) Dichocrocis punctiferalis
The natural insects are infected in the areas where the dichocrocis punctiferalis occurs naturally. And after 14-21 days of the initial occurrence of the insect pest, and when most of the transformation receptor control (CK-) is damaged by 4-5-year old larvae, investigating the damage rate of the dichocrocis punctiferalis to the corn plants one by one. The results of resistance of transgenic maize event LP007-3 to dichocrocis punctiferalis are shown in figure 6, table 20.
TABLE 20 resistance to dichocrocis punctiferalis under the native insect-inducing conditions of transgenic maize event LP007-3
Item/plant LP007-3 CK-
Percentage of damage (%) 0 67
The results show that: under the condition of natural occurrence of dichocrocis punctiferalis, compared with a transformation receptor control (CK-), the damage rate of dichocrocis punctiferalis to transgenic corn event LP007-3 is remarkably reduced, so that the transgenic corn event LP007-3 has better resistance to dichocrocis punctiferalis.
(5) Beet armyworm
The natural insects are infected in the areas where the beet armyworms occur more seriously naturally. And after 10-15 days of initial insect pest occurrence, and when most of transformation receptor control (CK-) is damaged by 4-6-year old young larvae, investigating the damage rate of the asparagus caterpillars to the corn plants one by one. The results of resistance of transgenic maize event LP007-3 to spodoptera exigua are shown in figure 7, table 21.
TABLE 21 resistance results of transgenic maize event LP007-3 to beet armyworm under naturally susceptible conditions
Item/plant LP007-3 CK-
Percentage of damage (%) 0 92
The results show that: under the condition that the beet armyworm naturally occurs, compared with a transformation receptor control (CK-), the damage rate of the beet armyworm to the transgenic corn event LP007-3 is obviously reduced, so that the transgenic corn event LP007-3 has better resistance to the beet armyworm.
(5) Spodoptera frugiperda
The natural insects are infected in the areas where the spodoptera frugiperda naturally occurs seriously. And after 10-15 days of initial insect pest occurrence and when most of transformation receptor control (CK-) is damaged by 4-6-year old larvae, investigating the damage rate of spodoptera frugiperda to the corn plants plant by plant. The results of the resistance of transgenic maize event LP007-3 to Spodoptera frugiperda are shown in Table 22, and the effects of field resistance are shown in FIG. 8.
TABLE 22 resistance results of transgenic maize event LP007-3 to Spodoptera frugiperda under naturally insect-susceptible conditions
Item/plant LP007-3 CK-
Percentage of damage (%) 0 100
The results show that: under the condition that spodoptera frugiperda naturally occurs, compared with a transformation receptor control (CK-), the damage rate of spodoptera frugiperda to the transgenic maize event LP007-3 is remarkably reduced, so that the transgenic maize event LP007-3 has better resistance to spodoptera frugiperda.
Example 6 herbicide tolerance testing of events
The test selects the farmyard herbicide (41% glyphosate isopropylammonium aqua) to spray. Random block design was used, 3 replicates. The area of the cell is 15m2(5m multiplied by 3m), the row spacing is 60cm, the plant spacing is 25cm, the cultivation management is carried out conventionally, and 1m wide isolation belts are arranged among cells. Transgenic maize event LP007-3 was subjected to 2 treatments, respectively: 1) spraying is not carried out; 2) the agro-herbicide was sprayed at the V3 foliar stage at a dose of 1680ga.e./ha, and then again at the same dose at the V8 stage. It is to be noted that different glyphosate contents and dosage forms of glyphosate herbicide, converted to the equivalent glyphosate acid form, are suitable for the following conclusions. Phytotoxicity symptoms were investigated 1 and 2 weeks after drug administration, respectively, and the yield of the plots was determined at the time of harvest. The phytotoxicity symptom scores are shown in table 23. Evaluating an index of herbicide tolerance of the transformation event using the herbicide damage rate as an evaluation index, specifically, the herbicide damage rate (%) ═ Σ (number of sibling damaged strains × number of ranks)/(number of total strains × highest rank); wherein the herbicide damage rate refers to glyphosate damage rate, and the glyphosate damage rate is determined according to phytotoxicity investigation results of 2 weeks after glyphosate treatment. The corn yield per cell was measured as the total corn grain yield (weight) in the middle 3 rows of each cell, and the yield difference between the different treatments was measured as the yield percentage (%) -spray/no-spray yield. The results for herbicide tolerance and corn yield results for transgenic corn event LP007-3 are shown in figure 9, table 24.
TABLE 23 grading Standard for the extent of phytotoxicity of Glyphosate herbicides on corn
Grade of phytotoxicity Description of the symptoms
Level 0 No phytotoxicity, and consistent growth with that of clear water;
level 1 Slight phytotoxicity symptom, local color change, and phytotoxicity spots accounting for less than 10% of the leaf area;
stage 2 Slightly inhibiting growth or losing green, and the area of phytotoxicity spots is below 1/4;
grade 3 Has great influence on growth and development, leaf deformity or plant dwarfing or phytotoxicity spots occupying less than 1/2
4 stage The influence on growth and development is large, the leaves are seriously deformed, or the plants are obviously dwarfed or the leaf withered spots are below 3/4;
grade 5 The phytotoxicity is heavy, the dead plant or phytotoxicity spots occupy more than 3/4 of the leaf area.
TABLE 24 results for tolerance of transgenic maize event LP007-3 to glyphosate herbicide and maize yield results
Figure BDA0002919315000000421
The results show that, in terms of herbicide (glyphosate) damage rate: 1) transgenic corn event LP007-3 suffered a substantially 0% injury rate under glyphosate herbicide (800 ml/acre) treatment, and thus, transgenic corn event LP007-3 had good glyphosate herbicide tolerance.
In terms of yield: the yield of the transgenic corn event LP007-3 is not obviously different under the treatment of not spraying and spraying 2 glyphosate seeds with the concentration of 800 ml/mu, and the yield of the transgenic corn event LP007-3 is not reduced basically after the glyphosate herbicide is sprayed, so that the transgenic corn event LP007-3 is further proved to have good tolerance to the glyphosate herbicide.
Taken together, regenerated transgenic maize plants were tested for the presence of cry1Ab, cry2Ab, vip3Aa, and epsps genes by taqman analysis (see example 2), and characterized for insect resistance and copy number of glyphosate herbicide tolerant lines. Event LP007-3 was selected to be superior by screening based on copy number of the gene of interest, good insect resistance, glyphosate herbicide tolerance and agronomic performance (see examples 5 and 6), with a single copy transgene, good insect resistance, glyphosate herbicide tolerance and agronomic performance (examples 5 and 6).
Finally, it should be noted that the above embodiments are only for illustrating the technical solutions of the present invention and not for limiting, and although the present invention is described in detail with reference to the preferred embodiments, it should be understood by those skilled in the art that modifications or equivalent substitutions may be made on the technical solutions of the present invention without departing from the spirit and scope of the technical solutions of the present invention.
Sequence listing
<110> Longping Biotechnology (Hainan) Co., Ltd
<120> transgenic maize event LP007-3 and methods of detecting the same
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<400> 5
gaggatcacg gaggatccta acaagaccgg aacgcctggc catgcggtgt ccgcgcggcc 60
gttgtggtgg agaagaaagg gccaacatga gggccccacc tgctagtgtc caagtccgat 120
cacgcgtgtg gacaccctac cactaccggc gcacccgaca gcgagagtga gggcgcgtga 180
agagattgcc atcaggggcc cagcagtcag cacgtggcgc caggcgcatc ctgcgacgcg 240
gtcactgggc tgggttcata ggtttcggtc caacgacgtt ctcctcccca cttttgcttt 300
tttattctga tttgaaatcc cttttttcta ctattcaaat tcaaatttgt ttgagtttca 360
agcagtgatc caacacaagt aaaaatacaa gcatgaggaa atattatata tatatatata 420
tttgttaagg attttatgcc aatctgttta tgcacattca tgtaggtgct aaatgcaaga 480
agaaatccat gtgccatcca tccaacactt cttctcattt gtttgctata atttgggtat 540
tacaaacatg tgtcacgaca aaaaaatgtt gttctaataa acatcagata aatgattaac 600
caaataatta acaaaaacat ctgttgcaat aaaataatat tttttacatg cagacgatat 660
tattatgaag ttatcgtgac tggaacggat caaaatggat taataacatg aaatatatgt 720
ttatttacta aaccacagac ctactcacaa ttaaccgtag gtttcgaggg ctagcaaatg 780
agttttacaa gactcaacga ataatgggtt atttacacta tcttctgggg ctatttttgc 840
aaaaatggct tttttcttcc tccctccatc tctcttttct cactttctta gcaacaaagg 900
aacaaccgcc atggggaggt cgtgggggga ggctcaaccg atagggggtt caccgccagg 960
gggccaggcg tgccctgcag ggcactcacg cccgctggcc acgccatggg gaaaagtgca 1020
tgggaggggc aagctcgcct gccctgctgc ttgctgcaac accagcactg atagtttaaa 1080
ctgaaggcgg gaaacgacaa tctgatcaag agcggagaat taagggagtc acgttatgac 1140
ccccgccgat gacgcgggac aagccgtttt acgtttggaa ctgacagaac cgcaacgctg 1200
caggaattgg ccgcaggtgg atttgtatta aactaatgac taattagtgg cactagcctc 1260
accgacttcg cagacgaggc cgctaagtcg cagctacgct ctcaacggca ctgactaggt 1320
agtttaaacg tgcacttaat taaggtaccg ggaatttaaa tcccgggagg tctcgcagac 1380
ctagctagtt agaatcccga gacctaagtg actagggtca cgtgacccta gtcacttaaa 1440
gctgatctag taacatagat gacaccgcgc gcgataattt atcctagttt gcgcgctata 1500
ttttgttttc tatcgcgtat taaatgtata attgcgggac tctaatcata aaaacccatc 1560
tcataaataa cgtcatgcat tacatgttaa ttattacatg cttaacgtaa ttcaacagaa 1620
attatatgat aatcatcgca agaccggcaa caggattcaa tcttaagaaa ctttattgcc 1680
aaatgtttga acgatcggga attcccatgg ggatcagagc tcctatcagt acagcggcga 1740
gatgttagtt ggcaccagca tgatgttcat gaggtcgaac tgggtgccag agttcagggt 1800
cacgttgatg tccagcggga cgtcggagtt gctgctggcc accacgttgc caatgttgat 1860
gtcgctgaag cgggcgccgt tgtcgttgac gccatcattg ttggtcgtcg tgttcacatt 1920
ggtggctgtg tacaccctcc cgttgatggt gaccctgatg gtggagttgc caatggagct 1980
gacgcgcagg tacaggttgt agctgttgcc gttgccgcgc agggtgtacc tggcggtggt 2040
gttgttctgc tcgaacctca gggagtcgcc ctggttgccg aacttctcgg agatgaaggt 2100
gcgtgtctgg ttgttcactt gggtggcgtg gattggagag atggtgaagc cggtgtaatc 2160
attgggcgcc aggtggatca tggagccgtt ctcatgcaca gcgtggatgt tgttcttcct 2220
gttatggacg ctcaccatgt acgcccttgc acctccgggc gtcccggacg gagaggcgat 2280
gttcctgatc tcgttgtagt gcagtggacg gcggaggtcc tcgttgcgga cgacgagagg 2340
aacaccagag atgttcctga tgaagtagtc ggggaagtag ttagaatttc cacgcgccgt 2400
gaaggcgccg ctccggaggc caagggtggt ctcgaaggac tcggtttgcc agttggtgac 2460
ggtggccacg ccctcgcggt cggagccgct gtcgagccag gacctcacga acggggtgag 2520
cagcggcggc aggaaggtgg agcagttgaa gttctggttg aacggcgatg caccaatgtc 2580
gccgctcgag atgccgccgg agtagttcac tctggcagca agcagagcat gagttgtggt 2640
ggagccgggg aggccaacaa tgttggggaa ggtgttggag aggcgagcac cagagaagcc 2700
gttgaggacg tagttggagt tgacttggaa caacgaatac aggaatggcc agtcctggct 2760
ggtgaagctc tgagtttgtt ggggaccaga gccgctggcg tagaggttgg cgccgctgga 2820
caccagcagg ctctggtact tgaagagcga ccagatgctg acgtactcga acacgttcag 2880
gaacatgtag gtcctgaact ccagcatgtc gtgaagcctc gtattgaggc ccttgaaggc 2940
cgactggtag gtgttgatgc aatagttgga gtagtccctg gtgtagttct tcaggtagtc 3000
gcggtaggtc ctcagcgtgg ctgcagagat gccccactcg tcagcgttga ggatcacgtc 3060
acgaatgaag gagaggtgca ggttggcagc ctgagcaaag agtggcagca ggagcagctg 3120
gtagccttgc atctggaact gaggcaagcg gttgaggaac agttgttgca tggtgttcac 3180
ggaagaagtg atggacagag gcaccgcatt gcggttgggg ttgaggaagt tgtccacttg 3240
gcggttgaac tcctccacgt ttgcttgcag acccgtcagc tcagcgttga cgcgagcaag 3300
ggtatcagtg ttgaggcgct ggttgagaaa cttctcggtc tccctgagga tgtcttgcat 3360
gaggttggtg gagccagatg gaaagatcag gttgcggagt tccgagagga tgcgcttccc 3420
gacgagagag ccgaccttct tgagaaggaa gctggccacc gtgccgacga cggggtccac 3480
gtacaggctg tggttgttct tcttccactc cgtccactcc ttctgaacag tgtcgaggct 3540
cttgtgctgg aagctgaatg gatcatgcgc cgcgacgttg taggcgtcgc agatggtggt 3600
gcgaccagag ttcaggacgg agttgtccat ggcctgcatg cagcggatgc gcccgccggt 3660
cgacagcggc ggcaggtacg acagcgtctc gaacttcttg ttgccgtagg ccggccacac 3720
ctgcacgtag tacgtgtgtt ttggttcgtt tggggttggg aattgggatg ggatgggcaa 3780
cacacatcag tccatgcatg gatcatcagt tcccttccta ttactaactc gctagctgca 3840
gctgctgcaa tgcaaagaac tactagctag gatgcatttg ttacctgcat gcaccggatc 3900
cttccgccgt tgctgacgtt gccgaggctt ctggaggagc ggcgggcgac ggggaggctg 3960
gcggtggact tgagcccctg gaacggagcg acggcggtgg ccgacgaggc catcatcacg 4020
gtgggcgcca tgctgatcct ctagaggccg cttggtatct gcattacaat gaaatgagca 4080
aagactatgt gagtaacact ggtcaacact agggagaagg catcgagcaa gatacgtatg 4140
taaagagaag caatatagtg tcagttggta gatactagat accatcagga ggtaaggaga 4200
gcaacaaaaa ggaaactctt tatttttaaa ttttgttaca acaaacaagc agatcaatgc 4260
atcaaaatac tgtcagtact tatttcttca gacaacaata tttaaaacaa gtgcatctga 4320
tcttgactta tggtcacaat aaaggagcag agataaacat caaaatttcg tcatttatat 4380
ttattccttc aggcgttaac aatttaacag cacacaaaca aaaacagaat aggaatatct 4440
aattttggca aataataagc tctgcagacg aacaaattat tatagtatcg cctataatat 4500
gaatccctat actattgacc catgtagtat gaagcctgtg cctaaattaa cagcaaactt 4560
ctgaatccaa gtgccctata acaccaacat gtgcttaaat aaataccgct aagcaccaaa 4620
ttacacattt ctcgtattgc tgtgtaggtt ctatcttcgt ttcgtactac catgtcccta 4680
tattttgctg ctacaaagga cggcaagtaa tcagcacagg cagaacacga tttcagagtg 4740
taattctaga tccagctaaa ccactctcag caatcaccac acaagagagc attcagagaa 4800
acgtggcagt aacaaaggca gagggcggag tgagcgcgta ccgaagacgg tagatcctag 4860
aaggattggt tgagtatctg atgatccttc aaatgggaat gaatgccttc ttatatagag 4920
ggaattcttt tgtggtcgtc actgcgttcg tcatacgcat tagtgagtgg gctgtcagga 4980
cagctctttt ccacgttatt ttgttcccca cttgtactag aggaatctgc tttatctttg 5040
caataaaggc aaagatgctt ttggtaggtg cgcctaacaa ttctgcacca ttcctttttt 5100
gtctggtccc cacaagccag ctgctcgatg ttgacaagat tactttcaaa gatgcccact 5160
aactttaagt cttcggtgga tgtctttttc tgaaacttac tgaccatgat gcatgtgctg 5220
gaacagtagt ttactttgat tgaagattct tcattgatct cctgtagctt ttggctaatg 5280
gtttggagac tctgtaccct gaccttgttg aggctttgga ctgagaattc ttccttacaa 5340
acctttgagg atgggagttc cttcttggtt ttggcgatac caatttgaat aaagtgatat 5400
ggctcgtacc ttgttgattg aacccaatct ggaatgctgc taaatcctga gaagcttctg 5460
gattttggtt ttaggaatta gaaattttat tgatagaagt attttacaaa tacaaataca 5520
tactaagttg tacaaaaacc agcaactcac tgcactgcac ttcacttcac ttcactgtat 5580
gaataaaagt ctggtgtctg gttcctgatc gatgactgac tactccactt tgtgcagaac 5640
agatctaggc gcgccctact tgatgctcac gtcgtagaag tgcacgatcg ggccgccgta 5700
caggttgttg ccctggctca gctcgatgta gaagttgtcc ttctcgaact tggtggtgaa 5760
catctcgctc acgtccttgg cgccgctcat gtacctcttc tcgaacagca cctcgcggga 5820
gttgcggatg cgcacgttgg cgtcgccgct cacgctgaag tacacgcggt aggtgctgaa 5880
gctgtccagc tgcaggttct gcttcaggat gccgcggccg ccctggtaca gggtcagggt 5940
gttgccgctg atgttggtgc tgccggtgct ggtccagttg ttggtgttga tcagctccgg 6000
gctcagcagc ttctcgctcg ggctgatctc caggatgatg aagttgtcgc cccaggcctc 6060
gtcgccgttc tggctcttca ggatcaggta cacgcccttc aggtcggtgc cggtggtgaa 6120
gcgcttgttg atggtctggt agtcctccag gttgttgttg gtgtcctcgt agtggatgta 6180
gccggtgttc tcgtccttca ggtgaatcga tggcttgccc ttcacggtgt actggatcac 6240
gtactcggtc ttcggcttca gcttgtcgcc gatgaactgg ctgatgccgc cgtccttgtg 6300
cacgtacagg gccttggtgc cgttcacgcc gccggtgtgg tcgacgtagg cgttcttgtt 6360
gttggccttc cacggctcca ggttgtcctc ctcgatgctg ccgttctcca cgatgttgct 6420
gatgaagccg ctcggtggca cgatcagctt ggtctccttg ttgctcaggt cggtggctag 6480
cagcagctcg cgcaggtagc tcttacaggt cagggtgatc aggcggctgt tctcgtcggc 6540
ctgcaggcca aagccgttga tcggggtcag gaaggtctcg ctgatcacgc ccagtggcat 6600
gtagacgccg tcgtcgttcg cgctcagggt gcggtactcg gcctcgctgc tctccacctt 6660
cttcttgttc aggtcgatct cgccggtgct gctgtcgtag aagttggcgg tcacctcgta 6720
gcgcagggtc ttcatcttct tggtgaagtc gatcttggtg atcacgtact cgttcgggaa 6780
cacgatgttg ttggtgtagt agatttgctc gctctggtcc ggacacagca gcttgtccat 6840
gtcgccgtag atcacctcgc tcaagctgtc cttgtccacc tggtagttct gcttcagctt 6900
ggcctcgtac accttcagca cggtgatgct gtcgttgctg atctcgaagc cgatcaacgc 6960
gtggcccggc ttagcctcca cgatcatctt ggcgtcctcg tcgctgccct tcaccttggc 7020
gtagttcggg ttgctgaagg tgttgctcag ggtcggcagg atgttcacgc ggaactcctc 7080
cttctccttg ttcaagtgct cgttcatgat gctggtgtag tcgatgtcgg ccaggcccag 7140
cagcttgcga caggtggtca gggtcaggaa ggccttggcc tgcagggcgg tcagcacgat 7200
caggaagttg tacacgttgc ccacctcgct gccgctggtc ttcacgttct ccttggtgat 7260
cagctcgctg gcggtcttca gggcgctgcg gccgaacagg ttgttgccca ccatcacgtc 7320
gtggaaggtg ttcaggtaga actcgaagcc gtccacgtcg ttcttggtca cgctcttcgc 7380
cagctcggtc agctcggtca gctcgtccag gatgtcggcc gggctgccgt ccttcttcac 7440
cttgctgctg gtctcggtgg cgaaggtcag ctcttcgaac ttctcgttca cgtacttgat 7500
gcgctggtag gccggggtga tctcggtcag ggtgctgttg atcaggacgt tcacgttgat 7560
gatgtccagc ttgtcgctga tctcctgcag ctgcttgctc aggtactcga tctgcaggct 7620
cagggcgtag ttctgcttga gcacgtcgct cagcatgctg gtgatcttcg gcaggtacac 7680
gcgcagcatg gtgttgatgg cgtccagctt gttgttcacg tcgttcagca cctggttctg 7740
ctcgttggcg atcttaagga tctccttgct cagctcggtg ttcaggttgc cctgggcgat 7800
caggtcgttc aggctgccgt tcacgccgtc cagcttgccg ctgatgtcgt tcagcagctg 7860
ctggttcttc aggatctcgt ccagggtcag gtcgccgccg gtgtcggtct tgaagatcat 7920
gttcatgatg tccttgatgc cggtggcgaa gccgtagatg ccgttgaagt agtcgatgaa 7980
gctcggcagg gcgcgggcgt tcagcttggt gttgttcatg ttcatactag tctgcagaag 8040
taacaccaaa caacagggtg agcatcgaca aaagaaacag taccaagcaa ataaatagcg 8100
tatgaaggca gggctaaaaa aatccacata tagctgctgc atatgccatc atccaagtat 8160
atcaagatca aaataattat aaaacatact tgtttattat aatagatagg tactcaaggt 8220
tagagcatat gaatagatgc tgcatatgcc atcatgtata tgcatcagta aaacccacat 8280
caacatgtat acctatccta gatcgatatt tccatccatc ttaaactcgt aactatgaag 8340
atgtatgaca cacacataca gttccaaaat taataaatac accaggtagt ttgaaacagt 8400
attctactcc gatctagaac gaatgaacga ccgcccaacc acaccacatc atcacaacca 8460
agcgaacaaa aagcatctct gtatatgcat cagtaaaacc cgcatcaaca tgtataccta 8520
tcctagatcg atatttccat ccatcatctt caattcgtaa ctatgaatat gtatggcaca 8580
cacatacaga tccaaaatta ataaatccac caggtagttt gaaacagaat tctactccga 8640
tctagaacga ccgcccaacc agaccacatc atcacaacca agacaaaaaa aagcatgaaa 8700
agatgacccg acaaacaagt gcacggcata tattgaaata aaggaaaagg gcaaaccaaa 8760
ccctatgcaa cgaaacaaaa aaaatcatga aatcgatccc gtctgcggaa cggctagagc 8820
catcccagga ttccccaaag agaaacactg gcaagttagc aatcagaacg tgtctgacgt 8880
acaggtcgca tccgtgtacg aacgctagca gcacggatct aacacaaaca cggatctaac 8940
acaaacatga acagaagtag aactaccggg ccctaaccat ggaccggaac gccgatctag 9000
agaaggtaga gagggggggg gggggaggac gagcggcgta ccttgaagcg gaggtgccga 9060
cgggtggatt tgggggagat ctggttgtgt gtgtgtgcgc tccgaacaac acgaggttgg 9120
ggaaagaggg tgtggagggg gtgtctattt attacggcgg gcgaggaagg gaaagcgaag 9180
gagcggtggg aaaggaatcc cccgtagctg ccggtgccgt gagaggagga ggaggccgcc 9240
tgccgtgccg gctcacgtct gccgctccgc cacgcaattt ctggatgccg acagcggagc 9300
aagtccaacg gtggagcgga actctcgaga ggggtccaga ggcagcgaca gagatgccgt 9360
gccgtctgct tcgcttggcc cgacgcgacg ctgctggttc gctggttggt gtccgttaga 9420
ctcgtcgacg gcgtttaaca ggctggcatt atctactcga aacaagaaaa atgtttcctt 9480
agttttttta atttcttaaa gggtatttgt ttaattttta gtcactttat tttattctat 9540
tttatatcta aattattaaa taaaaaaact aaaatagagt tttagttttc ttaatttaga 9600
ggctaaaata gaataaaata gatgtactaa aaaaattagt ctataaaaac cattaaccct 9660
aaaccctaaa tggatgtact aataaaatgg atgaagtatt atataggtga agctatttgc 9720
aaaaaaaaag gagaacacat gcacactaaa aagataaaac tgtagagtcc tgttgtcaaa 9780
atactcaatt gtcctttaga ccatgtctaa ctgttcattt atatgattct ctaaaacact 9840
gatattattg tagtactata gattatatta ttcgtagagt aaagtttaaa tatatgtata 9900
aagatagata aactgcactt caaacaagtg tgacaaaaaa aatatgtggt aattttttat 9960
aacttagaca tgcaatgctc attatctcta gagaggggca cgaccgggtc acgctgcact 10020
gcagcctagg ttaagtgact agggtcacgt gactctagtc acttacttcg tggagatata 10080
ggggaaagag aacgctgatg tgacaagtga gtgagatata gggggagaaa tttaggggga 10140
acgccgaaca cagtctaaag tagcttggga cccaaagcac tctgttcggg ggtttttttt 10200
tttgtctttc aactttttgc tgtaatgtta ttcaaaataa gaaaagcact tggcatggct 10260
aagaaataga gttcaacaac tgaacagtac agtgtattat caatggcata aaaaacaacc 10320
cttacagcat tgccgtattt tattgatcaa acattcaact caacactgac gagtggtctt 10380
ccaccgatca acggactaat gctgctttgt caggcgcgcc tagcccaggt cctcgttcag 10440
gtcggtgcag cccacatcga tgtccaagga gaagtggtgg ctgtggtggg cacacttgcc 10500
gatcgggctg ggggcgctca gcggccagag ggaaccagta ccgggcacgt tgacggtctc 10560
gtgcttggcg ttgtagcgga tcaggtaaat ctcgaggtct tggctgtctt cgatgtagcc 10620
gcggagctgg tagcgagtgt aagccttgag cttggactca tcgatcttct ggtacaagta 10680
ggtagggtag cactcgtcga aagtgcccag gagagtcacg tagttctcct tgaacacatc 10740
gtcgccgccc tggatcgtga tgtcggtgct gccgcgccag ccgcggtcga gctgcctgtt 10800
gatgccgcgg aaattggggt cctggaggag attcctctcg tcgctgagac gcttggcatg 10860
cttcaccttc tcggacagct ccttcttctc gtcgaggcag aactcatcgg agaggcactc 10920
cacgaggttg gagacttggt cgatgtggta gtcagtgacg tcggtcttca ggccgatctg 10980
attgctggac gtgaagagct cattgacagc cttctgggct ctctccaggt cgtactcggc 11040
ttcgaaggtg acctcggctg gcacgaactc aatgcggtca atgtacacct cattgccgga 11100
attgaacacg tgggcgctca gggtgaaaac gctggagccg ttggagaagt tgaagggggt 11160
ggtgaaaccc acggtgcgga agctgccgga ttggaggttg ctgccgctgg acatggtggc 11220
ggagaagtta ccctgattga tcggcctgcc gtcgatggag gtgtggaatt gcaggttggt 11280
ggtgctagcg tagcgaatcc tgacgcggta cctctgggac aggggagcgg tgatgttgac 11340
gcggagggtg ctgatctggc ccggggaggt cctgcgcagg atgtcgccgc ccgtgaagcc 11400
tgggcccttc accacggagg tgccgctgcc caggttggtg gacttggtga gggggatttg 11460
ggtgatttgg gaggacggaa tgatattgtt gaactccgcg ctgcgatgaa tccaggagaa 11520
cataggagct ctgatgatgc tcacggacga gttgctgaag ccggagcgga acatggacac 11580
gtggctgagc ctgtgggaaa aaccctgcct ggggggcaca ttgttgttct gtggtgggat 11640
ctcgtccagg gaatccaccg tgccgctctt gcggtagaca gcggagggca ggttggagga 11700
ggtgccgtag gcgaactcag tgccatccag gacggacagc tgctggttgt tgataccgat 11760
gttgaagggc ctgcggtaca gggtggagct cagggtgcgg tagacgccct ggcccagctg 11820
agcgacgatg cgttgttgtg gagcggcgtt gcccatcgtg ccgtagagag gaaaggtaaa 11880
ctcggggccg ctgaagccga ccggggaggc catgatctgg tggccggacc agtagtactc 11940
gccgcggtgg gcatcggtgt agatagtgat gctgttgagg atgtccatca ggtgtgggct 12000
cctgatggag ccctcgatgc cctgggcgct gcccctgaag ctaccgtcga agttctccag 12060
gacggggttg gtgtagattt cgcgggtcag ttgtgacacg gtgcggatcg ggtaggtgcg 12120
ggagtcgtag ttcgggaaga gggacacaat gtccaggacg gtgagggtca gctcgcgcct 12180
gaactggttg tagcgaatcc agtctctaga atcagggccc cagacgcgct ccaggccagt 12240
gttgtaccag cggacagcgt ggtcggtgta gttgccgatc agcctggtga ggtcgttgta 12300
gcggctgttg atggtggcgg cgtcgaagcc ccacctctgg ccaaacacgc tgacgtccct 12360
cagcacgctg aggtgcaggt tggcggcctg gacgtacacg gacaggagcg ggacttggta 12420
gttctggacg gcgaagagtg ggatggcggt ggtcagggcg ctgttcatgt cgttgaactg 12480
gatgcgcatc tcctcgcgga gagctgggtt agtggggtcg gcctcccact cgcggaagct 12540
ctcagcgtag atttggtaga ggttgctgag gccctccagg cggctgatgg cctggttcct 12600
ggcgaactcc tcgatcctct ggttgatgag ctgctcgatt tgcaccagga aggcgtccca 12660
ctgggagggg ccaaagatgc cccagatgat gtccacgagg cccaggacga agccagcgcc 12720
tggcacgaac tcgctgagca ggaactgcgt gagggagagg gagatgtcga tgggggtgta 12780
accggtctcg atgcgctcac cgccgagcac ctcgacctca gggttgctga ggcagttgta 12840
cgggatgcac tcgttgatgt ttgggttgtt gtccatggct agcttctacc tacaaaaaag 12900
ctccgcacga ggctgcattt gtcacaaatc atgaaaagaa aaactaccga tgaacaatgc 12960
tgagggattc aaattctacc cacaaaaaga agaaagaaag atctagcaca tctaagcctg 13020
acgaagcagc agaaatatat aaaaatataa accatagtgc ccttttcccc tcttcctgat 13080
cttgtttagc acggcggaaa ttttaaaccc cccatcatct cccccaacaa cggcggatcg 13140
cagatctaca tccgagagcc ccattccccg cgagatccgg gccggatcca cgccggcgag 13200
agccccagcc gcgagatccc gcccctcccg cgcaccgatc tgggcgcgca cgaagccgcc 13260
tctcgcccac ccaaactacc aaggccaaag atcgagaccg agacggaaaa aaaaacggag 13320
aaagaaagag gagaggggcg gggtggttac cggcggcggc ggaggcctcc cttggatctt 13380
atggtgtgtt gtccctgtgt gttctccaat agtgtggctt gagtgtgtgg aagatggttc 13440
tagaggatct gctagagtca gcttgtcagc gtgtcctctc caaatgaaat gaacttcctt 13500
atatagagga agggtcttgc gaaggatagt gggattgtgc gtcatccctt acgtcagtgg 13560
agatatcaca tcaatccact tgctttgaag acgtggttgg aacgtcttct ttttccacga 13620
tgctcctcgt gggtgggggt ccatctttgg gaccactgtc ggcagaggca tcttcaacga 13680
tggcctttcc tttatcgcaa tgatggcatt tgtaggagcc accttccttt tccactatct 13740
tcacaataaa gtgacagata gctgggcaat ggggcgcgcc tactcgaggt cattcatatg 13800
cttgagaaga gagtcgggat agtccaaaat aaaacaaagg taagattacc tggtcaaaag 13860
tgaaaacatc agttaaaagg tggtataaag taaaatatcg gtaataaaag gtggcccaaa 13920
gtgaaattta ctcttttcta ctattataaa aattgaggat gtttttgtcg gtactttgat 13980
acgtcatttt tgtatgaatt ggtttttaag tttattcgct tttggaaatg catatctgta 14040
tttgagtcgg gttttaagtt cgtttgcttt tgtaaataca gagggatttg tataagaaat 14100
atctttagaa aaacccatat gctaatttga cataattttt gagaaaaata tatattcagg 14160
cgaattctca caatgaacaa taataagatt aaaatagctt tcccccgttg cagcgcatgg 14220
gtattttttc tagtaaaaat aaaagataaa cttagactca aaacatttac aaaaacaacc 14280
cctaaagttc ctaaagccca aagtgctatc cacgatccat agcaagccca gcccaaccca 14340
acccaaccca acccacccca gtccagccaa ctggacaata gtctccacac ccccccacta 14400
tcaccgtgag ttgtccgcac gcaccgcacg tctcgcagcc aaaaaaaaaa agaaagaaaa 14460
aaaagaaaaa gaaaaaacag caggtgggtc cgggtcgtgg gggccggaaa cgcgaggagg 14520
atcgcgagcc agcgacgagg ccggccctcc ctccgcttcc aaagaaacgc cccccatcgc 14580
cactatatac ataccccccc ctctcctccc atccccccaa ccctaccacc accaccacca 14640
ccacctccac ctcctccccc ctcgctgccg gacgacgagc tcctcccccc tccccctccg 14700
ccgccgccgc gccggtaacc accccgcccc tctcctcttt ctttctccgt ttttttttcc 14760
gtctcggtct cgatctttgg ccttggtagt ttgggtgggc gagaggcggc ttcgtgcgcg 14820
cccagatcgg tgcgcgggag gggcgggatc tcgcggctgg ggctctcgcc ggcgtggatc 14880
cggcccggat ctcgcgggga atggggctct cggatgtaga tctgcgatcc gccgttgttg 14940
ggggagatga tggggggttt aaaatttccg ccgtgctaaa caagatcagg aagaggggaa 15000
aagggcacta tggtttatat ttttatatat ttctgctgct tcgtcaggct tagatgtgct 15060
agatctttct ttcttctttt tgtgggtaga atttgaatcc ctcagcattg ttcatcggta 15120
gtttttcttt tcatgatttg tgacaaatgc agcctcgtgc ggagcttttt tgtaggtaga 15180
agtgatcaac catggcgcaa gttagcagaa tctgcaatgg tgtgcagaac ccatctctta 15240
tctccaatct ctcgaaatcc agtcaacgca aatctccctt atcggtttct ctgaagacgc 15300
agcagcatcc acgagcttat ccgatttcgt cgtcgtgggg attgaagaag agtgggatga 15360
cgttaattgg ctctgagctt cgtcctctta aggtcatgtc ttctgtttcc acggcgtgca 15420
tgcttcacgg tgcaagcagc cggcccgcaa ccgcccgcaa atcctctggc ctttccggaa 15480
ccgtccgcat tcccggcgac aagtcgatct cccaccggtc cttcatgttc ggcggtctcg 15540
cgagcggtga aacgcgcatc accggccttc tggaaggcga ggacgtcatc aatacgggca 15600
aggccatgca ggcgatgggc gcccgcatcc gtaaggaagg cgacacctgg atcatcgatg 15660
gcgtcggcaa tggcggcctc ctggcgcctg aggcgccgct cgatttcggc aatgccgcca 15720
cgggctgccg cctgacgatg ggcctcgtcg gggtctacga tttcgacagc accttcatcg 15780
gcgacgcctc gctcacaaag cgcccgatgg gccgcgtgtt gaacccgctg cgcgaaatgg 15840
gcgtgcaggt gaaatcggaa gacggtgacc gtcttcccgt taccttgcgc gggccgaaga 15900
cgccgacgcc gatcacctac cgcgtgccga tggcctccgc acaggtgaag tccgccgtgc 15960
tgctcgccgg cctcaacacg cccggcatca cgacggtcat cgagccgatc atgacgcgcg 16020
atcatacgga aaagatgctg cagggctttg gcgccaacct taccgtcgag acggatgcgg 16080
acggcgtgcg caccatccgc ctggaaggcc gcggcaagct caccggccaa gtcatcgacg 16140
tgccgggcga cccgtcctcg acggccttcc cgctggttgc ggccctgctt gttccgggct 16200
ccgacgtcac catcctcaac gtgctgatga accccacccg caccggcctc atcctgacgc 16260
tgcaggaaat gggcgccgac atcgaagtca tcaacccgcg ccttgccggc ggcgaagacg 16320
tggcggacct gcgcgttcgc tcctccacgc tgaagggcgt cacggtgccg gaagaccgcg 16380
cgccttcgat gatcgacgaa tatccgattc tcgctgtcgc cgccgccttc gcggaagggg 16440
cgaccgtgat gaacggtctg gaagaactcc gcgtcaagga aagcgaccgc ctctcggccg 16500
tcgccaatgg cctcaagctc aatggcgtgg attgcgatga gggcgagacg tcgctcgtcg 16560
tgcgtggccg ccctgacggc aaggggctcg gcaacgcctc gggcgccgcc gtcgccaccc 16620
atctcgatca ccgcatcgcc atgagcttcc tcgtcatggg cctcgtgtcg gaaaaccctg 16680
tcacggtgga cgatgccacg atgatcgcca cgagcttccc ggagttcatg gacctgatgg 16740
ccgggctggg cgcgaagatc gaactctccg atacgaaggc tgcctgaact agtgatcgtt 16800
caaacatttg gcaataaagt ttcttaagat tgaatcctgt tgccggtctt gcgatgatta 16860
tcatataatt tctgttgaat tacgttaagc atgtaataat taacatgtaa tgcatgacgt 16920
tatttatgag atgggttttt atgattagag tcccgcaatt atacatttaa tacgcgatag 16980
aaaacaaaat atagcgcgca aactaggata aattatcgcg cgcggtgtca tctatgttac 17040
tagatccctg cagggaattc ttaattaagt gcacgcggcc gcctacttag tcaagagcct 17100
cgcacgcgac tgtcacgcgg ccaggatcgc ctcgtgagcc tcgcaatctg tacctagttt 17160
agctagttag gacgttaaca gggacacgtg gaggggtggt tgtgaggcgg gggtgatcac 17220
aggggcgcgt gagcaggggt agcgcgagtg cgatggtcag gctatgcgca accgttacct 17280
ctaaattttt tcccctatat cactttcccc cctatttttt catctcccgc agcggttccc 17340
cctaaatact cctcctatac cccactacca ctataaaata tcattttcta taccaactat 17400
caatttttta tctactaaca attactcgtg gacccacagt acagtgtcgt aggggtgaat 17460
agtgaaacgc tagattgagg gagagagaga agagggtcgc ttcaaagagt tgcttatagg 17520
ggacagcgtt gcgcggtcag aggacctcta cgaaggggag ggggttgttt agcgctgtgc 17580
gctgcagaca gcctcagctc cctggccggc tccctgctta ttgcagcctt aagggaaagg 17640
aaacgagagg gatagaggag agggggcgca gggaagggtt ggccgtggag gggctgcaac 17700
aaaacagtgg aacaaaagaa gaacaaggaa ccaaaatcat gacggttgct caccggagaa 17760
gaaaccctca ccggagccga ggataaatct gtcgattggc agtgattcaa agagggaaac 17820
cgaaatccat gagcaccaag ttgtagatct cgactggaca aacgtagaag taccctcgga 17880
ttccaccagc gacacacgga ttaaaagtaa ttgctcgtcg gagttagaac cgtctcgaac 17940
ttcgataagc aattctagga gatgtagatc gaatctgaga atactgtttt gatatatata 18000
tatatatata gctagggttt ggatgaaata aaaatttggg tcaaatttgg attttatcat 18060
ttattatttg cagaaaatac agaaattcgt tttaaattct caaaatattg tagaagcttc 18120
cgaaaattcc aggacaatta ctagaaatgt tttggcacct aacaaactca aaaaacacat 18180
ttagggtttt tgaaaatgtt tttaagtaac tcaaataaat agattttggt tttcaaaaat 18240
caaatatatt ttgcact 18257
<210> 6
<211> 492
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 6
tgatagttta aactgaaggc gggaaacgac aatctgatca agagcggaga attaagggag 60
tcacgttatg acccccgccg atgacgcggg acaagccgtt ttacgtttgg aactgacaga 120
accgcaacgc tgcaggaatt ggccgcaggt ggatttgtat taaactaatg actaattagt 180
ggcactagcc tcaccgactt cgcagacgag gccgctaagt cgcagctacg ctctcaacgg 240
cactgactag gtagtttaaa cgtgcactta attaaggtac cgggaattta aatcccggga 300
ggtctcgcag acctagctag ttagaatccc gagacctaag tgactagggt cacgtgaccc 360
tagtcactta aagctgatct agtaacatag atgacaccgc gcgcgataat ttatcctagt 420
ttgcgcgcta tattttgttt tctatcgcgt attaaatgta taattgcggg actctaatca 480
taaaaaccca tc 492
<210> 7
<211> 190
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 7
gcgcgcaaac taggataaat tatcgcgcgc ggtgtcatct atgttactag atccctgcag 60
ggaattctta attaagtgca cgcggccgcc tacttagtca agagcctcgc acgcgactgt 120
cacgcggcca ggatcgcctc gtgagcctcg caatctgtac ctagtttagc tagttaggac 180
gttaacaggg 190
<210> 8
<211> 26
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 8
gaggatcacg gaggatccta acaaga 26
<210> 9
<211> 28
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 9
gatgggtttt tatgattaga gtcccgca 28
<210> 10
<211> 29
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 10
gcgcgcaaac taggataaat tatcgcgcg 29
<210> 11
<211> 30
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 11
agtgcaaaat atatttgatt tttgaaaacc 30
<210> 12
<211> 27
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 12
gagtttcaag cagtgatcca acacaag 27
<210> 13
<211> 27
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 13
atcagcttta agtgactagg gtcacgt 27
<210> 14
<211> 25
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 14
ccgtcatgat tttggttcct tgttc 25
<210> 15
<211> 24
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 15
ccgcctactt agtcaagagc ctcg 24
<210> 16
<211> 21
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 16
tgggaggacg gaatgatatt g 21
<210> 17
<211> 21
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 17
aactcgtccg tgagcatcat c 21
<210> 18
<211> 21
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 18
aactcgtccg tgagcatcat c 21
<210> 19
<211> 18
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 19
ggacagaggc accgcatt 18
<210> 20
<211> 18
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 20
cgggtctgca agcaaacg 18
<210> 21
<211> 24
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 21
tccacttggc ggttgaactc ctcc 24
<210> 22
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 22
ggtgtcctcg tagtggatgt 20
<210> 23
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 23
tgatccagta caccgtgaag 20
<210> 24
<211> 18
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 24
ttcaggtgaa tcgatggc 18
<210> 25
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 25
gcaaatcctc tggcctttcc 20
<210> 26
<211> 19
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 26
tgaaggaccg gtgggagat 19
<210> 27
<211> 18
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 27
cgtccgcatt cccggcga 18
<210> 28
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 28
agcagacggc acggcatctc tgt 23
<210> 29
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 29
cagaagtaga actaccgggc cct 23
<210> 30
<211> 538
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 30
catccagttc aacgacatga acagcgccct gaccaccgcc atcccactct tcgccgtcca 60
gaactaccaa gtcccgctcc tgtccgtgta cgtccaggcc gccaacctgc acctcagcgt 120
gctgagggac gtcagcgtgt ttggccagag gtggggcttc gacgccgcca ccatcaacag 180
ccgctacaac gacctcacca ggctgatcgg caactacacc gaccacgctg tccgctggta 240
caacactggc ctggagcgcg tctggggccc tgattctaga gactggattc gctacaacca 300
gttcaggcgc gagctgaccc tcaccgtcct ggacattgtg tccctcttcc cgaactacga 360
ctcccgcacc tacccgatcc gcaccgtgtc ccaactgacc cgcgaaatct acaccaaccc 420
cgtcctggag aacttcgacg gtagcttcag gggcagcgcc cagggcatcg agggctccat 480
caggagccca cacctgatgg acatcctcaa cagcatcact atctacaccg atgcccac 538
<210> 31
<211> 597
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 31
agaagaacaa ccacagcctg tacgtggacc ccgtcgtcgg cacggtggcc agcttccttc 60
tcaagaaggt cggctctctc gtcgggaagc gcatcctctc ggaactccgc aacctgatct 120
ttccatctgg ctccaccaac ctcatgcaag acatcctcag ggagaccgag aagtttctca 180
accagcgcct caacactgat acccttgctc gcgtcaacgc tgagctgacg ggtctgcaag 240
caaacgtgga ggagttcaac cgccaagtgg acaacttcct caaccccaac cgcaatgcgg 300
tgcctctgtc catcacttct tccgtgaaca ccatgcaaca actgttcctc aaccgcttgc 360
ctcagttcca gatgcaaggc taccagctgc tcctgctgcc actctttgct caggctgcca 420
acctgcacct ctccttcatt cgtgacgtga tcctcaacgc tgacgagtgg ggcatctctg 480
cagccacgct gaggacctac cgcgactacc tgaagaacta caccagggac tactccaact 540
attgcatcaa cacctaccag tcggccttca agggcctcaa tacgaggctt cacgaca 597
<210> 32
<211> 530
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 32
gatccagtac accgtgaagg gcaagccatc gattcacctg aaggacgaga acaccggcta 60
catccactac gaggacacca acaacaacct ggaggactac cagaccatca acaagcgctt 120
caccaccggc accgacctga agggcgtgta cctgatcctg aagagccaga acggcgacga 180
ggcctggggc gacaacttca tcatcctgga gatcagcccg agcgagaagc tgctgagccc 240
ggagctgatc aacaccaaca actggaccag caccggcagc accaacatca gcggcaacac 300
cctgaccctg taccagggcg gccgcggcat cctgaagcag aacctgcagc tggacagctt 360
cagcacctac cgcgtgtact tcagcgtgag cggcgacgcc aacgtgcgca tccgcaactc 420
ccgcgaggtg ctgttcgaga agaggtacat gagcggcgcc aaggacgtga gcgagatgtt 480
caccaccaag ttcgagaagg acaacttcta catcgagctg agccagggca 530
<210> 33
<211> 655
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 33
ctacgatttc gacagcacct tcatcggcga cgcctcgctc acaaagcgcc cgatgggccg 60
cgtgttgaac ccgctgcgcg aaatgggcgt gcaggtgaaa tcggaagacg gtgaccgtct 120
tcccgttacc ttgcgcgggc cgaagacgcc gacgccgatc acctaccgcg tgccgatggc 180
ctccgcacag gtgaagtccg ccgtgctgct cgccggcctc aacacgcccg gcatcacgac 240
ggtcatcgag ccgatcatga cgcgcgatca tacggaaaag atgctgcagg gctttggcgc 300
caaccttacc gtcgagacgg atgcggacgg cgtgcgcacc atccgcctgg aaggccgcgg 360
caagctcacc ggccaagtca tcgacgtgcc gggcgacccg tcctcgacgg ccttcccgct 420
ggttgcggcc ctgcttgttc cgggctccga cgtcaccatc ctcaacgtgc tgatgaaccc 480
cacccgcacc ggcctcatcc tgacgctgca ggaaatgggc gccgacatcg aagtcatcaa 540
cccgcgcctt gccggcggcg aagacgtggc ggacctgcgc gttcgctcct ccacgctgaa 600
gggcgtcacg gtgccggaag accgcgcgcc ttcgatgatc gacgaatatc cgatt 655
<210> 34
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 34
ctaacatctc gccgctgtac tga 23
<210> 35
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 35
cagagttcag ggtcacgttg 20
<210> 36
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 36
gccaatgttg atgtcgctga 20
<210> 37
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 37
cgatacgaag gctgcctgaa 20
<210> 38
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 38
ccatcaggtc catgaactcc 20
<210> 39
<211> 20
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 39
gtgacagggt tttccgacac 20

Claims (14)

1. A nucleic acid sequence comprising one or more selected from the sequences SEQ ID NOs 1 to 7 and complements thereof.
2. The nucleic acid sequence of claim 1, wherein the nucleic acid sequence is derived from a plant, seed, or cell comprising maize event LP007-3, a representative sample of seed comprising said event having been deposited under deposit number CCTCC No. P202016.
3. The nucleic acid sequence of claim 1, wherein the nucleic acid sequence is an amplicon diagnostic for the presence of maize event LP 007-3.
4. A DNA primer pair comprising a first primer and a second primer, wherein the first primer and the second primer each comprise a partial sequence of SEQ ID NO 5 or a complement thereof and when used in an amplification reaction with DNA comprising maize event LP007-3 produce an amplicon that detects maize event LP007-3 in a sample,
specifically, the first primer is selected from SEQ ID NO. 1 or a complementary sequence thereof, SEQ ID NO. 8 or SEQ ID NO. 12; the second primer is selected from SEQ ID NO. 2 or a complementary sequence thereof, SEQ ID NO. 11 or SEQ ID NO. 14.
More specifically, the first primer is selected from SEQ ID NO. 1 or a complementary sequence thereof, SEQ ID NO. 8 or SEQ ID NO. 12, and the second primer is selected from SEQ ID NO. 9 or SEQ ID NO. 13; or the first primer is selected from SEQ ID NO. 2 or a complementary sequence thereof, SEQ ID NO. 11 or SEQ ID NO. 14, and the second primer is selected from SEQ ID NO. 10 or SEQ ID NO. 15.
5. A DNA probe comprising a partial sequence of SEQ ID NO. 5 or a complementary sequence thereof, which hybridizes under stringent hybridization conditions to a DNA molecule comprising a nucleic acid sequence selected from the group consisting of SEQ ID NO. 1 to 7 or a complementary sequence thereof and does not hybridize under stringent hybridization conditions to a DNA molecule not comprising a nucleic acid sequence selected from the group consisting of SEQ ID NO. 1 to 7 or a complementary sequence thereof,
specifically, the DNA probe comprises a sequence selected from SEQ ID NO. 3 or a complementary sequence thereof, SEQ ID NO. 4 or a complementary sequence thereof,
more specifically, the DNA probe comprises a sequence selected from the group consisting of SEQ ID NO. 1 or a complementary sequence thereof, SEQ ID NO. 2 or a complementary sequence thereof, SEQ ID NO. 6 or a complementary sequence thereof, and SEQ ID NO. 7 or a complementary sequence thereof.
6. A marker nucleic acid molecule comprising a partial sequence of SEQ ID NO. 5 or a complementary sequence thereof, which hybridizes under stringent hybridization conditions to a DNA molecule comprising a nucleic acid sequence selected from the group consisting of SEQ ID NO. 1 to 7 or a complementary sequence thereof and does not hybridize under stringent hybridization conditions to a DNA molecule not comprising a nucleic acid sequence selected from the group consisting of SEQ ID NO. 1 to 7 or a complementary sequence thereof,
in particular, the marker nucleic acid molecule comprises a sequence selected from SEQ ID NO 3 or the complement thereof, SEQ ID NO 4 or the complement thereof,
more specifically, the marker nucleic acid molecule comprises a sequence selected from the group consisting of SEQ ID NO 1 or its complement, SEQ ID NO 2 or its complement, SEQ ID NO 6 or its complement and SEQ ID NO 7 or its complement.
7. A method for detecting the presence of DNA comprising transgenic corn event LP007-3 in a sample comprising:
(1) contacting a sample to be tested with the DNA primer pair of claim 4 in a nucleic acid amplification reaction;
(2) performing a nucleic acid amplification reaction;
(3) detecting the presence of the amplification product;
the amplification product comprises a nucleic acid sequence selected from the group consisting of sequences SEQ ID NOS: 1-7 and complements thereof, i.e., indicates the presence of DNA comprising transgenic maize event LP007-3 in the test sample.
8. A method for detecting the presence of DNA comprising transgenic corn event LP007-3 in a sample comprising:
(1) contacting a sample to be tested with the DNA probe of claim 5, and/or the marker nucleic acid molecule of claim 6;
(2) hybridizing the sample to be tested to the probe and/or the marker nucleic acid molecule under stringent hybridization conditions;
(3) detecting the hybridization of the sample to be detected with the probe and/or the marker nucleic acid molecule.
9. A DNA detection kit, comprising: the pair of DNA primers of claim 4, the DNA probe of claim 5, and/or the marker nucleic acid molecule of claim 6.
10. A method of protecting a corn plant from insect infestation comprising providing at least one transgenic corn plant cell comprising transgenic corn event LP007-3 in the diet of a target insect; target insects that feed on the transgenic corn plant cell are inhibited from further feeding on the corn plant.
11. A method of protecting a corn plant from herbicide induced damage comprising growing at least one transgenic corn plant comprising transgenic corn event LP 007-3.
12. A method of controlling weeds in a field planted with corn plants, comprising applying an effective dose of glyphosate herbicide to a field planted with at least one transgenic corn plant comprising transgenic corn event LP 007-3.
13. A method of growing a corn plant resistant to insects and/or tolerant to glyphosate herbicide comprising: planting at least one corn seed comprising transgenic corn event LP 007-3;
growing the corn seed into a corn plant;
(ii) attacking said maize plant with a target insect, and/or spraying said maize plant with an effective dose of glyphosate herbicide, harvesting a plant having reduced plant damage compared to other plants not having said transgenic maize event LP 007-3.
14. A processed product that produces autogenic corn event LP007-3, wherein said processed product is corn flour, corn oil, corn silk, or corn starch.
CN202110112170.9A 2021-01-27 2021-01-27 Transgenic corn event LP007-3 and detection method thereof Active CN112877454B (en)

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Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
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