ZA202304311B - Drug resistance of target strains of a pathogen - Google Patents

Drug resistance of target strains of a pathogen

Info

Publication number
ZA202304311B
ZA202304311B ZA2023/04311A ZA202304311A ZA202304311B ZA 202304311 B ZA202304311 B ZA 202304311B ZA 2023/04311 A ZA2023/04311 A ZA 2023/04311A ZA 202304311 A ZA202304311 A ZA 202304311A ZA 202304311 B ZA202304311 B ZA 202304311B
Authority
ZA
South Africa
Prior art keywords
pathogen
drug resistance
target
genetic variation
strain
Prior art date
Application number
ZA2023/04311A
Other languages
English (en)
Inventor
Praapti Jayaswal
Avlokita Tiwari
Original Assignee
Aarogyaai Innovations Pvt Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Aarogyaai Innovations Pvt Ltd filed Critical Aarogyaai Innovations Pvt Ltd
Publication of ZA202304311B publication Critical patent/ZA202304311B/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N20/00—Machine learning
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/10—Ploidy or copy number detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H20/00—ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance
    • G16H20/10—ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance relating to drugs or medications, e.g. for ensuring correct administration to patients
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Data Mining & Analysis (AREA)
  • Chemical & Material Sciences (AREA)
  • Software Systems (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Evolutionary Computation (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Artificial Intelligence (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Public Health (AREA)
  • Epidemiology (AREA)
  • Computing Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Mathematical Physics (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Medicinal Chemistry (AREA)
  • Primary Health Care (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
ZA2023/04311A 2020-12-21 2023-04-11 Drug resistance of target strains of a pathogen ZA202304311B (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
IN202041055641A IN202041055641A (cg-RX-API-DMAC7.html) 2020-12-21 2020-12-21
PCT/IN2021/051128 WO2022137251A1 (en) 2020-12-21 2021-11-30 Drug resistance of target strains of a pathogen

Publications (1)

Publication Number Publication Date
ZA202304311B true ZA202304311B (en) 2023-11-29

Family

ID=82158562

Family Applications (1)

Application Number Title Priority Date Filing Date
ZA2023/04311A ZA202304311B (en) 2020-12-21 2023-04-11 Drug resistance of target strains of a pathogen

Country Status (5)

Country Link
US (1) US20230395191A1 (cg-RX-API-DMAC7.html)
EP (1) EP4211620A4 (cg-RX-API-DMAC7.html)
IN (1) IN202041055641A (cg-RX-API-DMAC7.html)
WO (1) WO2022137251A1 (cg-RX-API-DMAC7.html)
ZA (1) ZA202304311B (cg-RX-API-DMAC7.html)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023223354A1 (en) * 2022-05-20 2023-11-23 Aarogyaai Innovations Pvt. Ltd. Novel mutations for determining drug resistance in tuberculosis treatment and implementations thereof
CN115631870B (zh) * 2022-11-29 2023-05-19 中国兽医药品监察所 兽医病原耐药快速鉴定应用平台
WO2024116201A1 (en) * 2022-11-29 2024-06-06 Aarogyaai Innovations Pvt. Ltd. Classification of lineages and sub-lineages of pathogens
CN116189919B (zh) * 2023-04-20 2023-07-14 杭州迪安医学检验中心有限公司 一种微生物药敏的计算机分析方法、分析系统及其应用
CN119851774A (zh) * 2025-03-20 2025-04-18 南方医科大学 一种基于用户特征分析的肺癌耐药性预测方法

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2010313228B2 (en) * 2009-10-30 2014-05-29 Biogenic Innovations, Llc Methylsulfonylmethane (MSM) for treatment of drug resistant microorganisms
MX345230B (es) * 2010-02-24 2017-01-20 The Broad Inst Inc * Metodos para diagnosticar patogenos de enfermedad infecciosa y su sensibilidad a farmacos.
CA3048246A1 (en) * 2016-12-28 2018-07-05 Ascus Biosciences, Inc. Methods, apparatuses, and systems for analyzing complete microorganism strains in complex heterogeneous communities, determining functional relationships and interactions thereof, and identifying and synthesizing bioreactive modificators based thereon
WO2020046801A1 (en) * 2018-08-27 2020-03-05 The Broad Institute, Inc. COMPOSITIONS AND METHODS FOR DETECTING ANTIBIOTIC RESPONSIVE mRNA EXPRESSION SIGNATURES AND USES THEREOF
CN120174057A (zh) * 2019-05-31 2025-06-20 I·A·路易斯 微生物的代谢组学表征

Also Published As

Publication number Publication date
US20230395191A1 (en) 2023-12-07
WO2022137251A1 (en) 2022-06-30
EP4211620A4 (en) 2024-11-20
EP4211620A1 (en) 2023-07-19
IN202041055641A (cg-RX-API-DMAC7.html) 2021-11-19

Similar Documents

Publication Publication Date Title
ZA202304311B (en) Drug resistance of target strains of a pathogen
Roe et al. Multilocus species identification and fungal DNA barcoding: insights from blue stain fungal symbionts of the mountain pine beetle
Allix-Béguec et al. Evaluation and strategy for use of MIRU-VNTR plus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates
Alispahic et al. Species-specific identification and differentiation of Arcobacter, Helicobacter and Campylobacter by full-spectral matrix-associated laser desorption/ionization time of flight mass spectrometry analysis
Vidal-Acuña et al. Identification of clinical isolates of Aspergillus, including cryptic species, by matrix assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS).
Sanguinetti et al. Identification of molds by matrix-assisted laser desorption ionization–time of flight mass spectrometry
Richter et al. Evaluation of the GenoType Mycobacterium assay for identification of mycobacterial species from cultures
Fouquier et al. Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
Santos et al. ploidyNGS: visually exploring ploidy with next generation sequencing data
EP4357461A3 (en) Determination of base modifications of nucleic acids
Veloo et al. The optimization and validation of the Biotyper MALDI-TOF MS database for the identification of Gram-positive anaerobic cocci
Dolatabadi et al. Differentiation of clinically relevant Mucorales Rhizopus microsporus and R. arrhizus by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS)
Meaden et al. The effects of host age and spatial location on bacterial community composition in the English Oak tree (Quercus robur)
EP4276190A3 (en) Methods for the diagnosis of bacterial vaginosis
Sheedy et al. Multigene sequence data reveal morphologically cryptic phylogenetic species within the genus Laccaria in southern Australia
Colabella et al. Merging FT-IR and NGS for simultaneous phenotypic and genotypic identification of pathogenic Candida species
Anderson et al. A PCR assay for the quantification of growth of the oomycete pathogen H yaloperonospora arabidopsidis in A rabidopsis thaliana
Najafzadeh et al. Rapid identification of fungal pathogens by rolling circle amplification using Fonsecaea as a model
AR118183A1 (es) Indicadores de la salud del suelo que utilizan genes funcionales microbianos
EP3660853A3 (en) Mass spectrometer, mass spectrometry method, and mass spectrometry program for discriminating a strain in a microorganism
Inderbitzin et al. Species identification in plant-associated prokaryotes and fungi using DNA
WO2023164017A3 (en) Intra-individual analysis for presence of health conditions
Stefanova Quality control and safety assessment of BCG vaccines in the post-genomic era
King et al. First application of loop‐mediated isothermal amplification (LAMP) assays for rapid identification of mating type in the heterothallic fungus Aspergillus fumigatus
Cruz et al. Development and evaluation of a real-time quantitative PCR assay for Aspergillus flavus