ZA200404993B - Corticotropin releasing factor 2 receptor agonists. - Google Patents

Corticotropin releasing factor 2 receptor agonists. Download PDF

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ZA200404993B
ZA200404993B ZA200404993A ZA200404993A ZA200404993B ZA 200404993 B ZA200404993 B ZA 200404993B ZA 200404993 A ZA200404993 A ZA 200404993A ZA 200404993 A ZA200404993 A ZA 200404993A ZA 200404993 B ZA200404993 B ZA 200404993B
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peptide
group
seq
crf
sequence
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ZA200404993A
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Robert Joseph Isfort
Wieslaw Adam Mazur
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Procter & Gamble
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Description

CORTICOTROPIN RELEASING FACTOR 2 RECEPTOR AGONISTS
FIELD OF INVENTION v
This invention relates to the use of novel peptides, and nucleic acids encoding the same, to treat CRE,R modulated disorders. :
BACKGROUND
CRFR and ligands :
There are at least two corticotropin releasing factor (CRF) receptors identified to date (CRF,R and CRE,;R) which belong to G-protein coupled receptor (GPCR) class. Agonist activation of CRE;R or CRE,R leads to Gos activation of adenylate cyclase. Adenylate cyclase catalyzes the formation of cAMP, which in turn has multiple effects including the activation of protein kinase A, intracellular calcium release and activation of mitogen-activated protein kinase (MAP kinase). In other studies, the enhancement of intracellular inositol triphosphate synthesis, after agonist activation of CRF receptors, suggests that CRFRs also couple to Gg
CRF,R and CRF,R have been cloned from human, rat, mouse, chicken, cow, catfish, frog and sheep. CRF,R and CRF,R each have a unique distribution patterns. In humans three isoforms, alpha, beta and gamma, of the CRF,R receptor have been cloned. Homologs for alpha and beta CRF,R have been identified in rat.
Several ligands/agonists of the CRFRs are known and include corticotropin releasing factor (or hormone, CRF, CRH), urocortin I, urocortin II (or stresscopin related peptide), urocortin III (or stresscopin), urotensin I, sauvagine and other related peptides. Corticotropin releasing factor binds to and activates CRFR and CRF;R. CRF is a major modulator of the body’s responses to stress. This 41-amino acid peptide presides over a panoply of neuronal, endocrine, and immune processes as the primary regulator of the hypothalamus-pituitary-adrenal . hormonal axis (HPA axis). In addition, there is substantial sequence homology between all known ligands of CRFR. Further, two CRF:R selective ligands have been identified, urocortin II ; (or stresscopin related peptide) and urocortin III (stresscopin). These peptides have been identified from multiple mammalian and fish species. .
The CRF receptors can be distinguished, from non-CRFRs, pharmacologically through the use of receptor selective agonists and antagonists. These selective agonists and antagonist, 1
A along with the CRFR knockout mice, have been useful in determining which CRF receptor mediates a particular biological response. ’
The role of CRF;R has been fairly well established. Mice in which the CRF;R gene has been ablated (CRF,R knockout) demonstrate an impaired stress response and reduced anxiety- v like behavior. CRF;R is a major mediator of the HPA axis. Specifically, CRF, which is released from the hypothalamus and transported to the anterior pituitary via the hypothalamic-hypophysial portal system, interacts with the CRF;R present on cells located in the anterior pituitary. Agonist activation of the CRF R results in release of ACTH from the cells of the anterior pituitary into the systemic circulation. The released ACTH binds the ACTH receptor present on cells located in the adrenal cortex, resulting in the release of adrenal hormones including corticosteroids.
Corticosteroids mediate many effects including, but not limited to, immune system suppression via a mechanism, which involves thymic and splenic atrophy. Thus activation of the CRF,R indirectly results in the down-regulation of the immune system via activation of the HPA axis.
The role of CRF,R is less well established. Mice in which the CRF.R gene has been ablated (CRF;R knockout) demonstrate an impaired or reduced food intake following stimulation with urocortin, lack of vasodilation, but a normal stress response. Experiments with CRF>R demonstrated that CRF;R is responsible for the hypotensive/vasodilatory effects of CRFR agonists and for the reduction in food intake observed following treatment of mice with CRFR agonists.
Skeletal Muscle Atrophy and Hypertrophy
B In addition, CRF,R is involved in the modulation of skeletal muscle atrophy and the - induction of hypertrophy. Skeletal muscle is a plastic tissue, which readily adapts to changes in either physiological demand for work or metabolic need. Hypertrophy refers to an increase in skeletal muscle mass while skeletal muscle atrophy refers to a decrease in skeletal muscle mass.
Acute skeletal muscle atrophy is traceable to a variety of causes including, but not limited to: disuse due to surgery, bed rest, or broken bones; denervation/nerve damage due to spinal cord injury, autoimmune disease, or infectious disease; glucocorticoid use for unrelated conditions; sepsis due to infection or other causes; nutrient limitation due to illness or starvation; and space travel. Skeletal muscle atrophy occurs through normal biological processes, however, in certain medical situations this normal biological process results in a debilitating level of muscle atrophy.
For example, acute skeletal muscle atrophy presents a significant limitation in the rehabilitation of patients from immobilizations, including, but not limited to, those accompanying an orthopedic procedure.’ In such cases, the rehabilitation period required to reverse the skeletal muscle atrophy is often far longer than the period of time required to repair the original injury.
Such acute disuse atrophy is a particular problem in the elderly, who may already suffer from substantial age-related deficits in muscle function and mass, because such atrophy can lead to . permanent disability and premature mortality.
Skeletal muscle atrophy can also result from chronic conditions such as cancer cachexia, . Chronic inflammation, AIDS cachexia, chronic obstructive pulmonary disease (COPD), congestive heart failure, genetic disorders, e.g., muscular dystrophies, neurodegenerative diseases and sarcopenia (age associated muscle loss). In these chronic conditions, skeletal muscle atrophy can lead to premature loss of mobility, thereby adding to the disease-related morbidity.
Little is known regarding the molecular processes which control atrophy or hypertrophy of skeletal muscle. While the initiating trigger of the skeletal muscle atrophy is different for the various atrophy initiating events, several common biochemical changes occur in the affected skeletal muscle fiber, including a decrease in protein synthesis and an increase in protein degradation and changes in both contractile and metabolic enzyme protein isozymes characteristic of a slow (highly oxidative metabolism/slow contractile protein isoforms) to fast (highly glycolytic metabolism/fast contractile protein isoforms) fiber switch. Additional changes in skeletal muscle, which occur, include the loss of vasculature and remodeling of the extracellular matrix. Both fast and slow switch muscle demonstrate atrophy under the appropriate conditions, with the relative muscle loss depending on the specific atrophy stimuli or condition. Importantly, all these changes are coordinately regulated and are switched on or off depending on changes in physiological and metabolic need.
The processes by which atrophy and hypertrophy occur are conserved across mammalian species. Multiple studies have demonstrated that the same basic molecular, cellular, and physiological processes occur during atrophy in both rodents and humans. Thus, rodent models of skeletal muscle atrophy have been successfully utilized to understand and predict human atrophy responses. For example, atrophy induced by a variety of means in both rodents and humans results in similar changes in muscle anatomy, cross-sectional area, function, fiber type switching, contractile protein expression, and histology. In addition, several agents have been - demonstrated to regulate skeletal muscle atrophy in both rodents and in humans. These agents include anabolic steroids, growth hormone, insulin like growth factor I, beta-adrenergic agonists, : and CRF;R agonists. Together, these data demonstrate that skeletal muscle atrophy results from common mechanisms in both rodents and humans. 3
Cs
While some agents have been shown to regulate skeletal muscle atrophy and are approved for use in humans for this indication, these agents have undesirable side effects such as ; hypertrophy of cardiac muscle, neoplasia, hirsutism, androgenization of females, increased morbidity and mortality, liver damage, hypoglycemia, musculoskeletal pain, increased tissue ’ turgor, tachycardia, and edema. Currently, there are no highly effective and selective treatments for either acute or chronic skeletal muscle atrophy. Thus, there is a continuing need to identify other therapeutic agents, which treat skeletal muscle atrophy.
Muscular Dystrophies
Muscular dystrophies encompass a group of inherited, progressive muscle disorders, distinguished clinically by the selective distribution of skeletal muscle weakness. The two most common forms of muscle dystrophy are Duchenne and Becker dystrophies, each resulting from the inheritance of a mutation in the dystrophin gene, which is located at the Xp21 locus. Other dystrophies include, but are not limited to, limb-girdle muscular dystrophy which results from mutation of multiple genetic loci including the p94 calpain, adhalin, y-sarcoglycan, and f3- sarcoglycan loci; fascioscapulohumeral (Landouzy-Dejerine) muscular dystrophy, myotonic dystrophy, and Emery-Dreifuss muscular dystrophy. The symptoms of Duchenne muscular dystrophy, which occurs almost exclusively in males, include a waddling gait, toe walking, lordosis, frequent falls, and difficulty in standing up and climbing stairs. Symptoms start at about 3-7 years of age with most patients confined to a wheelchair by 10-12 years and many die at oo about 20 years of age due to respiratory complications. Current treatment for Duchenne muscular dystrophy includes administration of prednisone (a corticosteroid drug), which while ‘mot curative, slows the decline of muscle strength and delays disability. Corticosteroids, such as prednisone, are believed to act by blocking the immune cell activation and infiltration which are precipitated by muscle fiber damage resulting from the disease. Unfortunately, corticosteroid treatment also results in skeletal muscle atrophy which negates some of the potential benefit of blocking the immune response in these patients. Thus, there is a continuing need to identify therapeutic agents which slow the muscle fiber damage and delay the onset of disability in patients with muscular dystrophies, but cause a lesser degree of skeletal muscle atrophy than current therapies. .
SUMMARY OF THE INVENTION
. The present invention provides isolated peptides that are CRF;R agonists. Specifically, the invention provides an isolated peptide, or nucieic acid encoding the same, that are CRF, v urocortin I, urocortin II, urocortin III, sauvagine, urotensin I or related peptide derivatives. The invention also provides for pharmaceutical composition comprising a safe and effective amount of an isolated peptide of the present invention and a pharmaceutically acceptable excipient. The invention further provides a kit comprising an isolated peptide in unit dose form and usage instructions.
The administration of a peptide, or nucleic acid encoding the same, pharmaceutical composition, or kit of the present invention, to a subject in need thereof, is effective for the treatment of CRF,R modulated disorders such as muscle atrophy or wasting. The invention also provides for an antibody that is specific to the peptides of the present invention. Lastly, the invention provides for the use of a peptide of the present invention, or nucleic acid encoding the same, in the manufacture of a medicament for the treatment of a CRF,R modulated disorder in a subject in need thereof.
The present invention encompasses isolated non-native peptides according to the
Formula (I): alpha — beta — gamma — delta — epsilon — zeta — eta — theta @® wherein: (a) alpha comprises a sequence of a formula X;X,X3X,XsXs; wherein:
Xi, X; and Xj are each selected from the group consisting of nil, A,E, DG, N, P,
Q,S,T,and Z;
X, is selected from the group consisting of F,I,L, P, T, and V;
Xs is selected from the group consisting of A, P, S, T, and V;
Xs is selected from the group consisting of I, L, M, and N; (b) beta comprises a sequence of a formula SXgDXje, wherein: Xs and Xo are each independently selected from the group consisting of I, L, and V; (c) gamma comprises a sequence of a formula X;;X 2X3; wherein: X,is selected from a group consisting of P, T, V, and S, and Xj; and Xj; are each independently selected ] from the group consisting of A, Naphthylalanine (Represented as B), C, D, E, F, G,
HILKLMN,P,QR,ST,V,W, and Y; (d) delta comprises a sequence of a formula X;4X15X)6, wherein:
Xi4 is selected from the group consisting of I, L, and M;
Xs is selected from the group consisting of L. and M; and .
Xie is selected from the group consisting of S, N, Q, and R; (e) epsilon comprises a sequence of a formulaX7X;8X19X20X21, Wherein: -
X17 is selected from the group consisting of V, I, L, T, K, E, N, and Q;
X18 is selected from the group consisting of L, M, V, A, and T;
Xo is selected from the group consisting of I, F, L, and M;
Xap 1s selected from the group consisting of D, E, N, and H; and
Xa is selected from the group consisting of L, V, I, Q, M, and R; (f) zeta comprises a sequence of a formula X,X2X2X,s, wherein:
Xp, is selected from the group consisting of nil, A, D, E, S, and T;
Xs is selected from the group consisting of nil, K, and R;
Xa is selected from the group consisting of nil, AH, M,N, Q, T, and Y;
Xs is selected from the group consisting of nil, E, D, I, K, N, Q, and R; (g) eta comprises a sequence of the formula X36X27X28X50X 30X31, wherein:
Xo is selected from the group consisting of A,D, G, H,K, N, Q, and S;
Xa; is selected from the group consisting of A, E, I, L, M, and Q;
Xs is selected from the group consisting of A, H, K, Q, R, and V;
Xa is selected from the group consisting of A, E, K, N, M, and Q;
Xs is selected from the group consisting of H, K, N, Q, and R;
X31 is selected from the group consisting of A and K; (h) theta comprises a sequence of the formula X3,X33NX3sX36 X37 Xs X 00K 0X, Wherein: ~~
Xs, is selected from the group consisting of A, E, H, and T;
X33 is selected from the group consisting of A,D,E, LL L,N,Q,R, S, and T;;
Xs is selected from the group consisting of A and R;
X36 is selected from the group consisting of E, H, , K, L, N, Q, and R;
X37 is selected from the group consisting of F, I, L, M, and Y;
Xs is selected from the group consisting of L, F, and M;
X39 is selected from the group consisting of A, D, E, N, and Q; '
Xp is selected from the group consisting of A, D,E, H,LK,N,Q,R, S, and T;
Xa is selected from the group consisting of A, F, I, and V; and variants thereof. j 6 » oo
Lr
In one embodiment, the invention comprises of the amino acid sequence
IVLSLDVPIGLLQILLEQX 0KX5 X2X23X24X55X56QATTNARILARV (SEQ
ID NO: 531) wherein: (a) X)9 is selected from the group consisting of D and E; (b) X3, is selected from the group consisting of A and Q; (c) X;; is selected from the group consisting of R, E, and K; (d) X,3 is selected from the group consisting of A, K, and N; (e) Xy4 is selected from the group consisting of A, E, and L; (f) Xys is selected from the group consisting of R and K; and (g) Xs is selected from the group consisting of E and Q.
In another embodiment, the invention comprises of the amino acid sequence
NDDPPISIDLPX,X;sLLRNMIEMARIENEREQAGLNAKYLAEV (SEQ ID
NO: 532) wherein:
Xi, is selected from the group consisting of F, L, Q, T, and Y; and
Xs is selected from the group consisting of F, I, Y, H, L, and Q. 6A AMENDED SHEET _
All documents cited are, in relevant part, incorporated herein by reference; the citation of ’ any document is not to be construed as an admission that it is prior art with respect to the present invention.
SEQUENCE LISTING DESCRIPTION
Table 1 describes various proteins and protein fragment sequences that bind to CRF receptors. These selected sequences are included with the corresponding Genbank or Derwent accession number(s) and the animal species from which it is reported, as well as accession numbers for related nucleotide sequences that encode identical, or nearly identical, amino acid sequences. These known and novel sequences of the invention are further presented in the sequence listing.
Table 1
Sequence amino Genbank (GB), Related Genbank
Description acid Swiss-Prot (SP) (GB) or Derwent
SEQ or Derwent (D) (D) Accession
ID NO: Accession No. for | Nos. nucleotide sequence urocortin I 2 Homo sapiens | Fragment of AC109828 (GB) fragment AF038633 (GB) AX015619 (GB) amino acid AV708591 (GB) residues 83-122 AV708591 (GB)
AAZ35707 (D)
AAT73432 (D) urocortin II 4 Homo sapiens | Fragment of . fragment AF320560 (GB) amino acid . residues 72-109 urocortin III Homo sapiens Fragment of AY026949 (GB) fragment AF361943 (GB) . amino acid residue 118-157 - corticotropin Homo sapiens Fragment of AC090195(GB) releasing V00571 (GB) AC090196 (GB) hormone amino acid BC002599(GB) fragment residues 154-194 AC021240 (GB)
E00245 (GB) corticotropin 10 Ovis sp. E00212 (GB) J00803 (GB) releasing factor M22853 (GB) fragment sauvagine 11 Phyllomedusa P01144 (SP) a = ll EE
DESCRIPTION OF THE INVENTION
Glossary of Terms
The following is a list of definitions for terms used herein. “Agonist” means any compound, including, but not limited to, antibodies, that activates a receptor. For example, CRFR agonists include, but are not limited to CRF, urocortin, urocortin
II, urocortin III, urotensin I, sauvagine and related analogs.
I “Antibody”, in its various grammatical forms, means immunoglobulin molecules and immunologically active portions of immunoglobulin molecules, i.e, molecules that contain an antigen binding site which specifically binds an antigen. As used herein, “isolated antibody,” means an antibody which has been partially or completely separated from the proteins and naturally occurring organic molecules with which it is naturally associated. “Binding affinity” means the propensity for a ligand to interact with a receptor and is inversely related to the dissociation constant for a specific CRF ligand-CRFR interaction. The dissociation constant can be measured directly via standard saturation, competition, or kinetics binding techniques or indirectly via pharmacological techniques involving functional assays and endpoints. ) “Chimeric antibody” means an antibody that contains structural elements from two or more different antibody molecules, i.e., from different animal species. Chimeric antibodies include, but are not limited to, antibodies known as “humanized antibodies” which include, but are not limited to, chimeric antibodies generated by the technique known as complementarity . determining region grafting. “CRI” means corticotropin releasing factor which is the same as corticotropin releasing v hormone (CRH). Exemplary CRF peptides include r/h CRF and ovine CRF (see U.S. Pat. No. 4,415,558), and the like. “CRF analog” means substances which act as ligands of CRFRs. Suitable CRF analogs can be obtained from a variety of vertebrate species and include, but are not limited to, substances such as sauvagine (see, e.g., U.S. Pat. No. 4,605,642), urotensin (see, e.g., U.S. Pat.
Nos. 4,908,352; and 4,533,654), mouse urocortin II, human urocortin-related peptide (Reyes,
TM. et al., Proc. Nat’l Acad Sci 98:2843-2848 (2001)), urocortin (see, e.g., WO 97/00063), human urocortin II (stresscopin related peptide), human urocortin IIT (stresscopin), pufferfish
URP 1, pufferfish URP II, urotensin I, and the CRF analogs described in U.S. Pat. Nos: 4,415,558; 4,489,163; 4,594,329; 4,605,642; 5,109,111; 5,235,036; 5,278,146; 5,439,885; 5,493,006; 5663292; 5,824,771; 5,844,074; and 5,869,450. Specific CRF analogs include hUcnl (human urocortin I, AF038633 (GB)); hUroll (human urocortin II or stresscopin related peptide)(AF320560); hUrolll (human urocortin III or stresscopin, AF361943); hCRF (human corticotropin releasing factor)(V00571(GB)); oCRF (sheep corticotropin releasing factor E00212 (GB)); Svg (sauvagine, P01144 (SP)). “CRFR agonist” means a compound or molecule which has the ability to activate CRF;R,
CREF:R, or both. “CRFR” means CRFR or CRF;R. The term “CRFR ” also includes truncated and/or mutated proteins wherein regions of the receptor molecule not required for ligand binding or signaling have been deleted or modified. : “CRF;R” means any isoforms of CRF;R from any animal species. The CRFR has previously been referred to as CRF-RA, PC-CRF, CRF, (Perrin, M.H., et al. Endocrinology 133:3058-3061 (1993), Chen, R., et al. Proc. Natl. Acad. Sci.USA 90:8967-8971 (1993), Chang,
C-P. et al., Neuron 11:1187-1195 (1993), Kishimoto, T., et al., Proc. Natl. Acad. Sci.USA, 92:1108-1112 (1995) and, Vita, N. et al., FEBS Lett. 335: 1-5 (1993)) or the CRH receptor. ) The definition of CRF;R includes, but is not limited to, those receptors for which the cDNA or genomic sequence encoding the receptor has been deposited in a sequence database.
These sequences include Accession Nos.: X72304, E11431, 1.23332, 192584, T37068, T28968,
Q81952, 123333, NM_004382, AF180301, T28970, 125438, 124096, 192586, Q81954,
AHO006791, NM_007762, X72305, AF054582, Y14036, AF229359, AF229361, AB055434 and
L41563. The nucleotide and protein sequences of these receptors are available from GenBank or
Derwent. . “CRF;R” means any isoform of CRF,R from any animal species. CRF;R has also been referred to as HM-CRF, CRF-RB , (Kishimoto, T., et al., Proc. Natl. Acad. Sci.USA, 92:1108- Y 1112 (1995) and Perrin, M. et al. Proc. Natl. Acad. Sci.USA 92:2969-2973 (1995)).
The definition of CRF;R receptor includes, but is not limited to, those receptors for which the DNA sequence encoding the receptor has been deposited in a sequence database.
These sequences include Accession Nos.: U34587, E12752, NM_001883, T12247, T66508,
AF011406, AF019381, U16253, T12244, T28972, U17858, NM_009953, Y14037 and
AF229360. The nucleotide and protein sequences of these receptors are available from GenBank or Derwent. “Inhibit” means to partially or completely block a particular process or activity. For example, a compound inhibits skeletal muscle atrophy if it either completely or partially prevents muscle atrophy. “Isolated peptide” means a peptide molecule is said to be “isolated” when physical, mechanical or chemical methods are employed to remove the peptide from cellular constituents that are normally associated with the protein. A skilled artisan can readily employ standard purification methods to obtain an isolated peptide. “Isolated nucleic acid” means a nucleic acid molecule is substantially separated from contaminant nucleic acid molecules encoding other polypeptides. Purification and sequence
BB identification techniques are well known in the art. : As used herein, two DNA sequences are said to be “operably associated” if the nature of the linkage between the two DNA sequences does not (1) result in the introduction of a frame- shift mutation, (2) interfere with the ability of a promoter region to direct the transcription of the coding sequences, or (3) interfere with the ability of the corresponding RNA transcript to be translated into a protein. For example, a coding sequence and regulatory sequences are operably associated when they are covalently linked in such a way as to place the transcription of the coding sequence under the influence or control of the regulatory sequences. Thus, a promoter region is operably associated with a coding sequence when the promoter region is capable of effecting transcription of that DNA sequence such that the resulting transcript is capable of being ) translated into the desired peptide.
“Selective agonist” means that the agonist generally has greater, preferably has . significantly greater, activity toward a certain receptor(s) compared with other receptors, not that it is completely inactive with regard to other receptors. v “Sequence Identity” or “Homology” at the amino acid or nucleotide sequence level is determined by BLAST (Basic Local Alignment Search Tool) analysis using the algorithm employed by the programs blastp, blastn, blastx, tblastn and tblastx (Altschul er al. (1997)
Nucleic Acids Res. 25, 3389-3402 and Karlin ef al. (1990) Proc. Natl. Acad. Sci. USA 87, 2264- 2268) which are tailored for sequence similarity searching. The approach used by the BLAST program is to first consider similar segments, with gaps (non-contiguous) and without gaps (contiguous), between a query sequence and a database sequence, then to evaluate the statistical significance of all matches that are identified and finally to summarize only those matches which satisfy a preselected threshold of significance. For a discussion of basic issues in similarity searching of sequence databases, see Altschul ef al. (1994) Nature Genetics 6, 119-129. The search parameters for histogram, descriptions, alignments, expect (i.e., the statistical significance threshold for reporting matches against database sequences), cutoff, matrix and filter (low complexity) are at the default settings. The default scoring matrix used by blastp, blastx, tblastn, and tblastx is the BLOSUMG62 matrix (Henikoff ef al. (1992) Proc. Nasl. Acad. Sci. USA 89, 10915-10919), recommended for query sequences over 85 nucleotides or amino acids in length.
For blastn, the scoring matrix is set by the ratios of M (i.e., the reward score for a pair of matching residues) to N (i.e., the penalty score for mismatching residues), wherein the default values for M and N are +5 and -4, respectively. Four blastn parameters were adjusted as follows:
Q=10 (gap creation penalty); R=10 (gap extension penalty); wink=1 (generates word hits at every wink” position along the query); and gapw=16 (sets the window width within which gapped alignments are generated). The equivalent Blastp parameter settings were Q=9; R=2; wink=1; and gapw=32. A Bestfit comparison between sequences, available in the GCG package version 10.0, uses DNA parameters GAP=50 (gap creation penalty) and LEN=3 (gap extension penalty) and the equivalent settings in protein comparisons are GAP=8 and LEN=2. “Skeletal muscle hypertrophy” means an increase in skeletal muscle mass or skeletal ’ muscle function or both. “Skeletal muscle atrophy” means the same as “muscle wasting” and means a decrease in ) skeletal muscle mass or skeletal muscle function or both.
In describing protein structure and function, reference is made to amino acids comprising the protein. The amino acids may also be referred to by their conventional abbreviations, as shown: A = Ala = Alanine; T = Thr = Threonine; V = Val = Valine; C = Cys = Cysteine; L =
Leu = Leucine; Y = Tyr = Tyrosine; I = Ile = Isoleucine; N = Asn = Asparagine; P = Pro = .
Proline; Q = Gln Glutamine; F = Phe = Phenylalanine; D = Asp = Aspartic Acid; W = Trp =
Tryptophan; E = Glu = Glutamic Acid; M = Met = Methionine; K = Lys = Lysine; G = Gly = d
Glycine; R = Arg = Arginine; S = Ser = Serine; H = His = Histidine. The letter Z = GIx =
Pyrrolidone carboxylic acid, is used to indicate N-terminal glutamic acid or glutamine that has formed an internal cyclic lactam. This has been described in the sequence listing under “MODIFIED_RES” feature where appropriate. The letter B is used in the specification to designate Naphthylalanine, a modification of Alanine in certain peptides and has been indicated in the sequence listing under the “miscellaneous feature” in the sequence listing in the peptide sequences where it occurs. Abbreviation “Ac” has been used to indicate modified acetylated
NHo,-terminus in the specification and has been described under the “MODIFIED_RES” feature where appropriate. The peptides of the invention are also modified to have amide group at the carboxy-terminus. This is indicated in the sequence listing under “MODIFIED_RES” feature. In order to designate a deletion or an absence of an amino acid in context of the natural homolog, a “-* or “pil” is used throughout the application.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the arts of protein chemistry, pharmacology, or molecular biology. The methods, materials and examples described herein are not intended to be limiting. Other methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention.
Peptides
The present invention encompasses isolated non-native peptides according to the
Formula (I): alpha — beta — gamma — delta — epsilon — zeta — eta — theta @
In Formula (I), alpha comprises a sequence of a formula X;X,X3X4X5Xs; wherein: X;, X, and X; are each selected from the group consisting of nil, A, E, DG, N, P,Q, S, T and Z; X4 is } selected from the group consisting of F, I, L, P, T, and V; X;is selected from the group consisting of AL P,S, T and V; and Xs is selected from the group consisting of I, L, M, and N. In one aspect of the invention, alpha comprises a sequence of the formula X;X,X35X4XsXs; wherein Xj is nil, X; is selected from the group consisting of D, E and Z; X; is selected from the group ] consisting of D, G and N; X, is selected from the group consisting of L and P; X; is selected from the group consisting of P and S; and Xj is selected from the group consisting of I, L, M and N. In ‘ one embodiment, alpha further comprises the sequence selected from the group consisting of —
EDLPL (SEQ ID NO: 388), -DNPSL (SEQ ID NO: 389), -DDPPL (SEQ ID NO: 390), -ZGPPI (SEQ ID NO: 391), ---PSL, and —IVL, wherein “-” denotes nil. In another embodiment, alpha comprises the sequence -ZGPPL. In another embodiment, alpha comprises the sequence —
DNPSL. In another embodiment, alpha comprises the sequence -—IVL. In another embodiment, alpha comprises the sequence —-PSL.
In another aspect of the invention, alpha comprises the formula X;X,X3X,XsX,: wherein
X, is nil; X; is nil; Xj; is nil; X, is selected from the group consisting of F, I, L, P and V; Xs is selected from the group consisting of A, I, S, T and V; Xs is L. In one embodiment, alpha comprises a sequence selected from the group consisting of —IVL, —FTL, —LTL, FAL, -—
VIL, and PSL. In another embodiment, alpha comprises the sequence —IVL.
In yet another aspect of the invention, alpha comprises a sequence selected from the group consisting of SQEPPI (SEQ ID NO: 392), SEEPPI (SEQ ID NO: 393), -DNPSL, -—IVL, - TKFTL (SEQ ID NO: 394), -ZGPPI, SQEIVL (SEQ ID NO: 395), SEEIVL (SEQ ID NO: 396),
DNPIVL (SEQ ID NO: 397), TKIVL (SEQ ID NO: 398), ZGIVL (SEQ ID NO: 399), SDNPSL (SEQ ID NO: 401), STKFTL (SEQ ID NO: 402), SZGPPI (SEQ ID NO: 403), and NDDPPI (SEQ ID NO: 404).
In yet another aspect of the invention, alpha may be preceded by a polyhistidine (HHHHHH, SEQ ID NO: 400) or other peptide tag that may be useful in the purification or detection of the peptides of the invention.
In Formula (I), beta comprises a sequence of a formula SX3zDXjo, wherein Xz and Xo are each selected from the group consisting of I, L and V. In one embodiment, beta comprises the sequence selected from the group consisting of SIDL (SEQ ID NO: 405), SLDV (SEQ ID NO: 406), SLDL (SEQ ID NO: 407), SIDI (SEQ ID NO: 408), and SIDV (SEQ ID NO: 409). In another embodiment beta comprises the sequence further selected from the group consisting of : SIDL and SLDV. In yet another embodiment, beta comprises the sequence SIDL. In yet another embodiment, beta comprises the sequence SLDV. In yet another embodiment, beta comprises the ) sequence SIDV.,
In Formula (I), gamma comprises a sequence of a formula X;;X;,X;3; wherein X,; is PT,
V, or S, and X;; and X;; are each selected from the group consisting of A, B (Naphthylalanine),
CDE F,GHLKLM,N,P, QR,S,T,V,W, and Y. In one embodiment of the invention
Xi is P. In another embodiment, gamma comprises the sequence selected from the group . consisting of PAB, PAF, PAH, PAQ, PAY, PFB, PFE, PFF, PFG, PFH, PFI, PFL, PFQ, PFV,
PFW, PFY, PGY, PHB, PHF, PHH, PHQ, PHW, PHY, PIA, PIB, PID, PIE, PIF, PIG, PIH, PII, ’
PIL, PIQ, PIR, PIT, PIV, PIW, PIY, PKY, PLB, PLE, PLF, PLG, PLH, PLL, PLL, PLQ, PLV,
PLW, PLY, PNY, PQB, PQF, PQH, PQ PQL, PQQ, PQV, PQW, PQY, PRY, PSY, PTB, PTE,
PTF, PTH, PT], PTL, PTV, PTW, PTY, PVB, PVY, PWF, PWH, PWQ, PWW, PWY, PYB,
PYF, PYH, PYL PYL, PYQ, PYT, PYV, PYW, PYY, SLE, SLG, SIG, and VIG. In yet another embodiment of the invention, gamma comprises the sequence selected from the group consisting of PFE, PFG, PFH, PFQ, PFY, PLE, PLG, PLH, PLQ, PLY, PTE, PTH, PTY, PIE, PH, PIQ,
PIY, PIG, PIN and PTS. In yet another embodiment, gamma comprises the sequence selected from the group consisting of PFE, PFG, PFH, PFQ, PFY, PLE, PLG, PLH, PLQ, PLY, PTE,
PTH, PTY, PIE, PIH, PIQ, PIY, PYY, PFE, PTW, PQY, PHY, PII, PIL, PTI, PTF, PTL, PIV,
PIT, PTV and PIE. In yet another embodiment, gamma comprises the sequence selected from the group consisting of PIG, PTN, PTS, and PIG. In yet another embodiment, gamma comprises of sequence selected from PFQ, PYW, PLQ, PIG, PLY, PUY, PTY, PIG, PLL, PLF, and PFF. In yet another embodiment, gamma comprises the sequence PIG. In yet another embodiment, gamma comprises PFQ.
In Formula (I), delta comprises a sequence of a formula X14X15X16, Wherein X,, is selected from the group consisting of I, L, and M; X;s is selected from the group consisting of L and M; andXj; is selected from the group consisting of §, N, Q, and R. In one embodiment, delta ~ comprises a sequence selected from the group consisting of ILS, IMN, LLQ,LLR, and MLR. In one embodiment, delta comprises the sequence LQ or LLR.
In Formula (I), epsilon comprises a sequence of a formulaX;,X;X19X20X21, wherein, X;- is selected from the group consisting of V, IL, T, K, E, N, and Q; Xs is selected from the group consisting of L, M, V, A, and T; Xo is selected from the group consisting of I, F, L, and M; Xa is selected from the group consisting of D, E, N, and H; and Xj; is selected from the group consisting of L, V, I, Q, M, and R. In one embodiment, epsilon comprises a sequence selected from the group consisting of VLIDL (SEQ ID NO: 410), VLFDV (SEQ ID NO: 411), VLIEI (SEQ ID NO: 412), ILFNI (SEQ ID NO: 413), LLIEI (SEQ ID NO: 414), LLFNI (SEQ ID NO: 415), ILLEQ (SEQ ID NO: 416), ILIEI (SEQ ID NO: 417), ILLEI (SEQ ID NO: 418), TLLEL (SEQ ID NO: 419), KMIEI (SEQ ID NO: 420), KVIEI (SEQ ID NO: 421), EVLEM (SEQ ID
NO: 422), EMIEI (SEQ ID NO: 423), EVIEI (SEQ ID NO: 424), EAIEI (SEQ ID NO: 425),
ETIEI (SEQ ID NO: 426), ELIEI (SEQ ID NO: 427), ELIEI (SEQ ID NO: 428), NMIEM (SEQ ID . NO: 429), NMIHR (SEQ ID NO: 430), NMIHM (SEQ ID NO: 431), QMMEM (SEQ ID NO: 432), and LLFNI (SEQ ID NO: 433). In one embodiment of the invention, epsilon comprises the ’ sequence selected from the group consisting of VLIDL, VLFDV, ILFNI, LLENI, ILLEQ, TLLEL and KMIEL. In another embodiment, epsilon comprises the sequence selected from the group consisting of VLIDL, VLFDV, ILFNI and ILLEQ. In yet another embodiment, epsilon comprises the sequence selected from the group consisting of KMIEI or ILLEQ. In yet another embodiment, epsilon comprises the sequence KVIEI, KMIE], ILLEL ILLEQ, or TLLEL. In yet another embodiment, epsilon comprises the sequence KMIEL. In yet another embodiment, epsilon comprises the sequence ILLEQ.
In Formula (I), zeta comprises a sequence of a formula X5;X2X24Xas, wherein Xj; is selected from the group consisting of nil, A, D, E, S and T; Xj; is selected from the group consisting of nil, K and R; X4 is selected from the group consisting of nil, A H, M, N, Q, T and
Y; and Xs is selected from the group consisting of nil, E, D, I, K, N, Q and R. In one embodiment of the invention, zeta comprises a sequence of the formula X»,X23X74X5s; wherein
Xz is selected from the group consisting of nil, D and E; Xj; is selected from the group consisting of nil, K and R; X» is selected from the group consisting of nil, A H, M, N, Q, T and
Y; Xas is selected from the group consisting of nil, E, D, I, K, N, Q and R. In another embodiment, zeta comprises a sequence selected from the group consisting of SRAE (SEQ ID
NO: 434), EKAR (SEQ ID NO: 435), ERAR (SEQ ID NO: 436), EKQE (SEQ ID NO: 437),
TKDR (SEQ ID NO: 438), TKAD (SEQ ID NO: 439), AKAR (SEQ ID NO: 440), AKQR (SEQ
ID NO: 441), ERQR (SEQ ID NO: 442), AKAE (SEQ ID NO: 443), ERAE (SEQ ID NO: 444),
ARQR (SEQ ID NO: 445), EKQR (SEQ ID NO: 446), TKAN (SEQ ID NO: 447), TKAR (SEQ
ID NO: 448), EAAR (SEQ ID NO: 449), ERQE (SEQ ID NO: 450), ARAD (SEQ ID NO: 451),
EKTQ (SEQ ID NO: 452), ARAR (SEQ ID NO: 453), ARAE (SEQ ID NO: 454), ARQE (SEQ
ID NO: 455), AKQE (SEQ ID NO: 456), TRAD (SEQ ID NO: 457), AKAD (SEQ ID NO: 458),
TRAR (SEQ ID NO: 459), EKQQ (SEQ ID NO: 520), -RR, AA, -AAR, —R, -RAR, —A, -
AR, -ARA, -R-R, A-AR, A-A-, A—, ARA- and —-. In yet another embodiment, zeta comprises a ) sequence selected from the group consisting of EKAR, ERAR, EKQE and TKDR. In yet another embodiment, zeta comprises EKQE, EKTQ, ARAR, or EKAR. ’ In Formula (I), eta comprises a sequence of a formula X56X27X2X29X 30X31, wherein: Xs is selected from the group consisting of A, D, G, H, K, N, Q, and S; Xj; is selected from the group consisting of A, E, I, L, M and Q; X; is selected from the group consisting of A, H, K, Q,
R and V; Xj is selected from the group consisting of A, E, K, M, N and Q; Xj, is selected from the group consisting of H, K, N, Q and R; and Xj, is selected from the group consisting of A and }
K. In one embodiment of the invention, eta comprises a sequence selected from the group consisting of AAREQA (SEQ ID NO: 460); KEKKRK (SEQ ID NO: 461); SQRERA (SEQ ID .
NO: 462), KEKQQA (SEQ ID NO: 463), and QLAQQA (SEQ ID NO: 464) AARNQA (SEQ ID
NO: 521), KERNQA (SEQ ID NO: 522), KEKNQA (SEQ ID NO: 523), KQRERA (SEQ ID NO: 524), KERERA (SEQ ID NO: 525), KEKERA (SEQ ID NO: 526), KEKQRA (SEQ ID NO: 527),
AEAAAK (SEQ ID NO: 528), AAHAAA (SEQ ID NO: 529), and HAHAHA (SEQ ID NO: 530).
In yet another embodiment, eta comprises a sequence selected from the group consisting of
AAREQA, and KEKKRK. In yet still another embodiment, eta comprises the sequence
AAREQA. In yet still another embodiment, eta comprises a sequence selected from the group consisting of SQRERA and KEKQQA. In yet another embodiment, eta comprises the sequence
KEKQQA.
In Formula (I), theta comprises a sequence of the formula
X32X33N34X35X 36X37 X38 X30 X40Xa1, Wherein Xs, is selected from the group consisting of A, E, H and T; X33 is selected from the group consisting of A, D, E,I,L, N, Q, R, S and T; Xj; is selected from the group consisting of A and R; Xs is selected from the group consisting of E, H, I, K, L,
N, Q and R; Xj; is selected from the group consisting of F, I, L, M and Y; Xs; is selected from the group consisting of L, F and M; Xj is selected from the group consisting of A, D, E, N and Q;
Xo is selected from the group consisting of A, D, E, H, I, K, N, Q, R, S and T; Xy, is selected from the group consisting of A, F, and V. In one embodiment of the invention, theta comprises } a sequence of the formula X3X3NXssX36X3X2sXa0Xa0Xa1, wherein Xs; is selected from the ~ — ~~ group consisting of A, E and T; X33 is selected from the group consisting of A, D, E, NN, Q, S and
T; X;s is selected from the group consisting of A and R; Xs is selected from the group consisting of H, I, L, N, Q and R; Xj is selected from the group consisting of F, I, L, M, and Y; Xs is selected from the group consisting of L, F and M; Xj is selected from the group consisting of A,
D, E, N and Q; Xy is selected from the group consisting of nil, A, D, H, Q, R, S and T; Xj; is selected from the group consisting of I and V. In another embodiment, theta comprises a sequence selected from the group consisting of AANRLLLDTV (SEQ ID NO: 465), ’
AAQEQILAHV (SEQ ID NO: 466), ANNAELLAEI (SEQ ID NO: 467), ANNAHLLAHI (SEQ
ID NO: 468), ANNAKLLAKI (SEQ ID NO: 469), ANNALLLATI (SEQ ID NO: 470), )
ANNALLLDTI (SEQ ID NO: 471), ANNANLLANI (SEQ ID NO: 472), ANNAQLLAHI (SEQ
ID NO: 473), ANNAQLLAQI (SEQ ID NO: 474), ANNARILARV (SEQ ID NO: 475),
ANNARLLARI (SEQ ID NO: 476), ANNARLLDTI (SEQ ID NO: 477), ANNRLLLATI (SEQ } ID NO: 478), ANNRLLLDTI (SEQ ID NO: 479), EQNAHIFAHV (SEQ ID NO: 480),
EQNAQIFAHV (SEQ TD NO: 481), EQNARIFARV (SEQ ID NOC: 482), EQNRIFDSV (SEQ ID . NO: 483), ETNARILARV (SEQ ID NO: 484), HAQAHILAHV (SEQ ID NO: 485),
HSNRKIIDIA (SEQ ID NO: 4386), HSNRKLLDIA (SEQ ID NO: 487), HSNRKLMEII (SEQ ID
NO: 488), HTNARILARV (SEQ ID NO: 489), TNNRLLLATV (SEQ ID NO: 490),
TNNRLLLDTI (SEQ ID NO: 491), TSNRKLMEII (SEQ ID NO: 492), TTNARILARN (SEQ ID
NO: 493), TTNARILARV (SEQ ID NO: 494), TTNARLLATV (SEQ ID NO: 495),
TTNARLLDRYV (SEQ ID NO: 496), TTNARLLDTV (SEQ ID NO: 497), TTNRLLLARYV (SEQ
ID NO: 498), TTNRLLLATV (SEQ ID NO: 499), TTNRLLLDTV (SEQ ID NO: 500),
TTQARILARYV (SEQ ID NO: 501), and TTVARILARV(SEQ ID NO: 502). In yet another embodiment, theta comprises a sequence selected from the group consisting of TTNARILARYV,
ANNALLLDTI, ANNALLLATI, TTNARLLDTV and TTNARLLDRV. In yet another embodiment, theta comprises the sequence ANNARLLDTI, ANNARLLARI, ANNALLLDTI,
ANNALLLATI, TTNARLLDRV, TTNARILARV, ANNRLLLDTI, EQNARIFARYV,
EQNAHIFAHYV, and EQNAQIFAHV. One skilled in the art will readily appreciate that theta encompasses the C-terminus end of the peptide.
The peptides of the invention have also been described as a peptide of 41 amino acids with certain preferred sequences. Following peptide strings have been specifically exemplified:
ZGPPISIDLP (SEQ ID NO: 503) for residues X,-X;;, LLRK (SEQ ID NO: 504) for residues X;4-
X17, IEIEKQEKEKQQA (SEQ ID NO: 505) for residues X;4-X3;, PSLSID (SEQ ID NO: 506) for residues X4-Xo, and LLRTLLELEKTQSQRERAEQNA (SEQ ID NO: 507) for residues X4-3s.
Variants of the disclosed peptides, and nucleotide sequences encoding the same, are also encompassed by the present invention. As used herein, "variants," means those peptides, polypeptides or proteins, or nucleotide sequences encoding the same, that are substantially similar to those peptides described by Formula (I) and which may be used as CRF,R agonists. A peptide of Formula (I) may be altered in various ways to yield a variant of those encompassed by the present invention including amino acid substitutions, deletions, truncations, insertions, and ) modifications. Methods for such manipulations are generally known in the art. For example, variants can be prepared by mutations in the nucleotide sequences encoding the same. Methods ) for mutagenesis and nucleotide sequence alterations are well known in the art. See, for example,
Kunkel (1985) Proc. Natl. Acad. Sci. USA 82:488-492; Kunkel et al. (1987) Methods in Enzymol. 154:367-382; U.S. Pat. No. 4,873,192; Walker and Gaastra, eds. (1983) Techniques in Molecular
Biology (MacMillan Publishing Company, New York) and the references cited therein. In one embodiment of the variant, the substitution(s) of the peptide of Formula (I) is conservative in that i it minimally disrupts the biochemical properties of the variant. Thus, where mutations are introduced to substitute amino acid residues, positively charged residues (H, K, and R) preferably . are substituted with positively charged residues; negatively charged residues (D and E) preferably are substituted with negatively-charged residues; and neutral non-polar residues (A, EF, LL MP,
V, and W) preferably are substituted with neutral non-polar residues. In another embodiment of the variant, the overall charge, structure or hydrophobic/hydrophilic properties of the peptide can be altered without substantially adversely affecting CRF:R agonism. In still another embodiment, the variant is an active fragment of a peptide of Formula (I). In yet another embodiment of a variant, a peptide of Formula (I) is modified by acetylation, carboxylation, phosphorylation, glycosylation, ubiquitination, and labeling, whether accomplished by in vivo or in vitro enzymatic treatment of the protein or by the synthesis of the peptide using modified amino acids. Common non-limiting examples of modifications to amino acids include phosphorylation of tyrosine, serine, and threonine residues; methylation of lysine residue; acetylation of lysine residues; hydroxylation of proline and lysine residues; carboxylation of glutamic acid residues; glycosylation of serine, threonine, or asparagine residues; and ubiquitination of lysine residues. The variant can also include other domains, such as epitope tags and His tags (e.g., the peptide can be a fusion protein).
In yet another embodiment, peptide mimics of a peptide of Formula (I) are encompassed _ within the meaning of variant. As used herein, “mimic,” means an amino acid or an amino acid analog that has the same or similar function characteristics of an amino acid. Thus, forexampte, — — — - an arginine analog can be a mimic of arginine if the analog contains a side chain having a positive charge at physiologic pH, as is characteristic of the guanidinium side chain reactive group of arginine. Examples of organic molecules that can be suitable mimics are listed at Table 1 of U.S.
Pat. No. 5,807,819. Generally, a variant, or nucleic acid sequence encoding the same, of the present invention will have at least 70%, generally, 80%, preferably up to 90%, more preferably 95%, even more preferably 97%, still even more preferably 98%, and most preferably 99% sequence identity to its respective native amino acid sequence. Fusion proteins, or N-terminal, C- ’ terminal or internal extensions, deletions, or insertions into the peptide sequence shall not be construed as affecting homology.
) Use of the Peptides of the Invention as CRF,R Agonists
The peptides of the invention are useful for the treatment of a varieiy of diseases, : disorders, and conditions that are modulated by CRFzR or by CRF:R activity. As used herein, the terms “disease,” disorder” and “condition” are used interchangeably. As used herein, a disorder described by the terms “modulated by CRF:R,” or “modulated by CRF,R activity” refers to a disorder, condition or disease where CRF:R activity is an effective means of alleviating the disorder or one or more of the biological manifestations of the disease or disorder; or interferes with one or points in the biological cascade either leading to the disorder or responsible for the underlying disorder; or alleviates one or more symptoms of the disorder. Thus, disorders subject to “modulation” include those for which: (1) The lack of CRF;R activity is a “cause” of this disorder or one or more of the biological manifestations, whether the activity was altered genetically, by infection, by irritation, by internal stimulus or by some other cause; (2) The disease or disorder or the observable manifestation or manifestations of the disease or disorder are alleviated by CRE,R activity (the lack of CRF,R activity need not be causally related to the disease or disorder or the observable manifestations thereof); (3) CRF,R activity interferes with part of the biochemical or cellular cascade that results in or relates to the disease or disorder. In this respect, the CRF2R activity alters the cascade, and thus controls the disease, condition, or disorder.
In one embodiment of the invention, the peptides of the present invention have none or only weak CRF|R agonist activity. Thus, the peptides of the present invention are particularly useful for the treatment of CRE,R modulated disorders. One such CRFz2R modulated disorder is skeletal muscle atrophy. Skeletal muscle atrophy may be induced by disuse due to surgery, bed rest, broken bones; denervation/nerve damage due to spinal cord injury; autoimmune disease; infectious disease; glucocorticoid use for unrelated conditions; sepsis due to infection or other causes; nutrient limitation due to illness or starvation; cancer cachexia; chronic inflammation; acquired immunodeficiency syndrome (AIDS); cachexia; chronic obstructive pulmonary disease (COPD); congestive heart failure; sarcopenia and genetic disorders; e.g., muscular dystrophies, neurodegenerative diseases. } In another embodiment, the treatment of a CRF;R modulated disorder results in an increase of skeletal mass and function. Diseases and conditions affecting skeletal muscle mass and function include, but not limited to, skeletal muscle atrophy or wasting including acute atrophy/wasting resulting from disuse due to illness, surgery, bed rest or accident; nerve damage due to spinal cord injury, autoimmune disease, or infectious disease; glucocorticoid use for unrelated conditions; sepsis due to infection or other causes; nutrient limitation due to illness or k starvation; and space travel: and chronic atrophy/wasting including cancer cachexia, chronic inflammation, AIDS cachexia, COPD, congestive heart failure, genetic disorders, e.g., muscular . dystrophies, neurodegenerative diseases and sarcopenia (age associated muscle loss).
In yet another embodiment, the treatment of a CRF.R modulated disorder includes disorders affecting bone. Diseases and conditions affecting bone include, but not limited to, bone loss resulting from disuse due to illness, surgery, bed rest or accident; nerve damage due to spinal cord injury, autoimmune disease, or infectious disease; glucocorticoid use for unrelated conditions; sepsis due to infection or other causes; nutrient limitation due to illness or starvation; and space travel. Age and hormone related bone loss (osteoporosis) are also included.
In yet another embodiment, the treatment of a CRF:R modulated disorder includes disorders affecting the heart and circulatory system including but not limited to hypertension, congestive heart failure, damage to the heart resulting from heart attack, ischemia reperfusion injury, stroke, migraine, memory loss, Alzheimer’s disease, dementia, and the like.
In yet another embodiment, the treatment of a CRF,R modulated disorder includes disorder affecting the joints including but not limited to arthritis in particular osteoarthritis and rheumatoid arthritis.
In yet another embodiment, the treatment of a CRF:R modulated disorder includes metabolic diseases including obesity and diabetes. ~~ Inyet another embodiment, the treatment of a CRF2R modulated disorder includes: pain reduction; swelling reduction; allergic reactions, allergy; reducing body temperature; ‘suppressing appetite; congestive heart failure; stress and anxiety; altering undesirably low levels of adrenocorticotropic hormone (“ACTH”) secretion; controlling appetite, arousal, and cognitive functions; and preventing long term effects of stress, such as anxiety disorders, anorexia nervosa and melancholic depression.
The term “treatment” is herein to mean that, at a minimum, administration of a peptide of the present invention that mitigates a CRF;R modulated disorder in a mammalian subject, preferably in humans. Thus, the term “treatment” includes: preventing a CRF,R modulated ’ disorder from occurring in a mammal, particularly when the mammal is predisposed to acquiring the CRF.R modulated disorder, but has not yet been diagnosed with the disease; inhibiting the
CRE.R modulated disorder; and/or alleviating or reversing the CRF;R modulated disorder.
Insofar as the methods of the present invention are directed to preventing the CRF2R modulated disorder, it is understood that the term “prevent” does not require that the CRF:R modulated ) disorder be completely thwarted (see Webster's Ninth Collegiate Dictionary). Rather, as used herein, the term “preventing” refers to the ability of the skilled artisan to identify a population ) that is susceptible to CRF,R modulated disorders, such that administration of the peptides and kits of the present invention may occur prior to the onset of the symptoms of the CRF;R modulated disorder. The population that is at risk for a particular CRF2R modulated disorder is readily identifiable. For example, the population that is at risk for developing muscular dystrophy can be determined by identifying mutations in genes characteristic of the disorder. For example, and previously discussed, Duchenne and Becker dystrophies results from the inheritance of a mutation in the dystrophy gene, which is located at the Xp2l locus. Those individuals, of a population that possess these mutations are at risk of developing muscular dystrophy. Thus, the patient population is identifiable and could receive the administration of a composition or unit dose form of a kit of the present invention before progression of the disease.
Thus, progression of muscular atrophy or wasting in such individuals would be “prevented.”
Nucleic Acid Molecules
The present invention further provides nucleic acid molecules that encode the peptides of
Formula (I) and variants thereof, preferably in isolated form. As used herein, “nucleic acid” is defined as RNA or DNA that encodes a peptide of the present invention as defined above, or is ) complementary to a nucleic acid sequence encoding such peptides. Specifically contemplated are genomic DNA, cDNA, mRNA and antisense molecules, as well as nucleic acids based on alternative backbones or including alternative bases whether derived from natural sources or synthesized.
The present invention further provides a fragment of an encoding nucleic acid molecule.
As used herein, a fragment of an encoding nucleic acid molecule refers to a small portion of the entire protein coding sequence. The size of the fragment will be determined by the intended use.
For example, if the fragment is chosen so as to encode an active portion of a peptide of the present invention, the fragment will need to be large enough to encode the functional regions of the peptide.
Fragments of the encoding nucleic acid molecules of the present invention (i.e., synthetic oligonucleotides) that are used as probes or specific primers for the polymerase chain reaction (PCR), or to synthesize gene sequences encoding peptides of the invention, can easily be synthesized by chemical techniques, for example, the phosphotriester method of Matteucci et al., 21 -
Rp
J. Am. Chem. Soc., 103:3185-3191 (1981) or using automated synthesis methods. In addition, larger DNA segments can readily be prepared by well-known methods, such as synthesis of a Rk group of oligonucleotides that define various modular segments of the gene, followed by ligation of oligonucleotides to build the complete modified gene. .
The encoding nucleic acid molecules of the present invention may further be modified so as to contain a detectable label for diagnostic and probe purposes. A variety of such labels are known in the art and can readily be employed with the encoding molecules herein described.
Suitable labels include, but are not limited to, biotin, radiolabeled nucleotides and the like. A skilled artisan can readily employ any such label to obtain labeled variants of the nucleic acid molecules of the invention. Modifications to the primary structure itself by deletion, addition, or alteration of the amino acids incorporated into the protein sequence during translation can be made without destroying the activity of the protein. Such substitutions or other alterations result in proteins having an amino acid sequence encoded by a nucleic acid falling within the contemplated scope of the present invention.
Preparation of Peptides or Cell Lines Expressing Peptides
The peptides of the present invention can be prepared for a variety of uses, including, but not limited to, use as pharmaceutical reagents for the treatment of CRF,R modulated disorders. It will be clear to one of skill in the art that, for certain embodiments of the invention, purified peptides will be most useful, while for other embodiments cell lines expressing the peptides will be most useful. © Because the peptides of Formula (I) are short polypeptides, the skilled artisan will ~~ recognize that peptides of the present invention may be synthesized by direct synthesis, rather than by recombinant means, using techniques well known in the art. See Bodanszky, Principles of Peptide Synthesis, Springer-Verlag, Heidelberg (1984); and such as via solid-phase synthesis, see, e.g., Merrifield, J. Am. Chem. Soc., 85:2149-54 (1963); Barany et al., Int. J. Peptide Protein
Res., 30:705-739 (1987); and U.S. Pat. No. 5,424,398.
For example, the peptides can be synthesized with either an Applied Biosystem, Inc. (ABI) Model 433 automated synthesizer or a multi-reactor synthesizer (model Symphony™) from Protein Technology, Inc (PTI). As to peptides synthesized with the ABI synthesizer, all reagents are purchased from ABI (except piperidine which is purchased from Aldrich). Fmoc amino acids are purchased from ABI (except Fmoc-L-Pyr which is purchased from Chem-Impek).
Rink Amide resins are purchased from Nova Chemicals. Standard 0.1 mmole FastMoc chemistry with single coupling is used. The general Fmoc chemistry protocol for SPPS (solid phase peptide : synthesis) includes: 1) cleavage of the Fmoc protection groups with piperidine; 2) activation of the carboxyl group of amino acids; and 3) coupling the activated amino acids io the amino- ) terminal of the resin bound peptide chain to form peptide bonds. Amino acids are activated with 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU). A dry protected amino acid in a cartridge (1.0 mmol) is dissolved in a solution of HBTU, N,N- diisopropylethylamine (DIEA), and 1-hydroxybenzotriazole (HOB) in N,N-dimethylformamide (DMF) with additional N-methylpyrrolidone (NMP) added. The activated Fmoc amino acid is formed almost instantaneously and the solution is transferred directly to the reaction vessel. The step of Fmoc deprotection is monitored and controlled by conductivity measurement. The peptide chain is built on a Rink Amide resin since the C-terminal amide is needed. The final product is washed extensively with NMP and dichloromethane (DCM).
As to peptides synthesized with the PTI multiple synthesizer, all the Fmoc amino acids are purchased from NovaBiochem (except Fmoc-Pyr which is purchased from Chem-Impex).
Standard 0.05 mmole Fmoc synthesis protocols are used for syntheses. Fmoc amino acids (0.4 mmol) are dissolved in a solution of HBTU (200 mM), N-methylmorpholine (NMM, 04M) and
N,N-dimethylformamide (DMF) with additional N-methylpyrrolidone (NMP) added. The activated Fmoc amino acid is formed almost instantaneously and the solution is transferred directly to the reaction vessel. The step of Fmoc deprotection is conducted twice. The peptide chain is built on a Rink Amide resin since the C-terminal amide is needed. The final synthesis product is washed extensively with NMP and dichloromethane (DCM).
The newly synthesized peptides are deprotected. The resins containing synthesized peptides are unloaded from the synthesizer and briefly air-dried. Using 1.5-2.0 ml of the cleavage cocktail (comprising 959% trifluoroacetic acid (TFA), 2.5% ethanodithiol, 2.5% thioanisol, 2.5% phenol (W/V) in water) for 4 hours at room temperature, the peptides are cleaved off the resin and at the same time, the side chain protection groups [O-t-butyl (OtBu) for
Asp, Glu, Tyr, Thr and Ser; Pentamethylchroman-6-sulfonyl (Pmc) for Arg, t-butoxycarbonyl (Boc) for Trp and Lys; trityl (Trt) for His, Asn and Gln] are removed under the deprotection condition. The cleavage solution is separated from the resin by filtration. The filtrate is then } diluted with 15 ml of water. Six rounds of ether extraction are performed to clean the peptide product. The peptide is lyophilized and stored at -20°C before purification.
The deprotected peptides are purified and characterized. The peptide powder is dissolved in 50% acetic acid solution and injected onto a Vydac 1.0 cm LD. 25 cm length C-8 column with 5 um particle size, and 300 A pore size for purification. A Beckman System Gold high performance liquid chromatography (HPLC) system with dual wavelength (220 nm and 280 } nm) ultraviolet detector is used. A linear gradient of acetonitrile is programmed and introduced to the column to separate the peptide product from other substances. The elute is collected by a .
Pharmacia fraction collector, and the individual separation fractions were subjected to both analytical HPLC and (matrix assisted laser desorption ionization time of flight mass spectroscopy) MALDI-TOF MS for characterization to ensure the identity and purity.
The use of recombinant DNA technology in the preparation of the peptides, or of cell lines expressing these peptides, is also contemplated. Such recombinant methods are well known in the art. Methods for generating rDNA molecules are well known in the art, for example, see
Sambrook et al., Molecular Cloning - A Laboratory Manual, Cold Spring Harbor Laboratory
Press (1989). To express recombinant peptides of the present invention, an expression vector that comprises a nucleic acid which encodes the polypeptide of interest under the control of one or more regulatory elements, is prepared. The sequence of nucleic acids encoding the peptides of the present invention can be deduced from the peptide sequences discussed or claimed herein.
By methods well known in the art, the isolated pucleic acid molecule encoding the peptide of interest may be ligated into a suitable expression vector. The host-expression vector - systems that may be used for purposes of the invention include, but are not limited to: microorganisms such as bacteria (e.g., E. coli, B. subtilis) transformed with recombinant bacteriophage DNA, plasmid DNA, or cosmid DNA expression vectors containing nucleotide oo sequences encoding the peptides of the present invention; yeast (e.g., Saccharomyces, Pichia) transformed with recombinant yeast expression vectors containing nucleotide sequences encoding ~~ the peptides of the present invention; insect cell systems infected with recombinant virus expression vectors (e.g., baculovirus) containing nucleotide sequences encoding the peptides of the present invention; plant cell systems infected with recombinant virus expression vectors (€.g., cauliflower mosaic virus, tobacco mosaic virus) or transformed with recombinant plasmid expression vectors (e.g., Ti plasmid) containing nucleotide sequences encoding the peptides of the present invention; or mammalian cell systems (e.g., COS, CHO, HEK?293, NIH3T3) harboring recombinant expression constructs containing promoters derived from the genome of ’ mammalian cells (e.g., metallothionein promoter) or from mammalian viruses (e.g., retrovirus
LTR) and also containing nucleotide sequences encoding the peptides of the present invention.
In bacterial systems, a number of expression vectors may be advantageously selected depending upon the use intended for the peptide being expressed. For example, when a large oo quantity of such protein is needed, vectors which direct the expression of high levels of protein ’ products are desirable. One skilled in the art is able to generate such vector constructs and purify the proteins by a variety of methodologies including selective purification technologies such as ) fusion protein selective columns and antibody columns, and non-selective purification technologies.
In an insect protein expression system, the baculovirus A. californica nuclear polyhedrosis virus (AcNPV), is used as a vector to express foreign genes in S. frugiperda cells.
In this case, nucleotide sequences encoding the peptides of the present invention are cloned into non-essential regions of the virus and placed under the control of an AcNPV promoter. The recombinant viruses are then used to infect cells in which the inserted gene is expressed and the protein is purified by one of many techniques known to one skilled in the art.
In mammalian host cells, a number of viral-based expression systems may be utilized.
Utilization of these expression systems often requires the creation of specific initiation signals in the vectors for efficient translation of the inserted nucleotide sequences. This is particularly important if a portion of the nucleotide sequence used does not contain the endogenous initiation signal. The placement of this initiation signal, in frame with the coding region of the inserted nucleotide sequence, as well as the addition of transcription and translation enhancing elements and the purification of the recombinant protein, are achieved by one of many methodologies known to one skilled in the art. Also important in mammalian host cells is the selection of an appropriate cell type which is capable of the necessary post translational modifications of the recombinant protein. Such modifications, for example, cleavage, phosphorylation, glycosylation, acetylation, etc., require the selection of the appropriate host cell which contains the modifying enzymes. Such host cells include, but are not limited to, CHO, HEK293, NIH3T3, COS, etc. and ; are known by those skilled in the art. :
For long term, high expression of recombinant proteins, stable expression is preferred.
For example, cell lines that stably express peptides of the present invention may be engineered.
One of skill in the art, following known methods such as electroporation, calcium phosphate transfection, or liposome-mediated transfection, can generate a cell line that stably expresses the peptides of the present invention. This is usually accomplished by transfecting cells using . expression vectors which contain appropriate expression control elements (e.g., promoter sequences, enhancer sequences, transcriptional termination sequences, polyadenylation sites, translational start sites, etc.), a selectable marker, and the gene of interest. The selectable marker may either be contained within the same vector, as the gene of interest, or on a separate vector, i which is co-transfected with the peptide encoding sequence-containing vector. The selectable marker in the expression vector may confer resistance to the selection and allows cells to stably . integrate the vector into their chromosomes and to grow to form foci which in turn can be cloned and expanded into cell lines. Alternatively, the expression vector may allow selection of the cell . expressing the selectable marker utilizing a physical attribute of the marker, i.e., expression of
Green Fluorescent Protein (GFP) allows for selection of cells expressing the marker using fluorescence activated cell sorting (FACS) analysis.
One of skill in the art is able to select an appropriate cell type for transfection in order to allow for selection of cells into which the sequence of interest has been successfully integrated.
For example, where the selectable marker is herpes simplex virus thymidine kinase, hypoxanthine-guanine phosphoribosyltransferase or adenine phosphoribosyltransferase, the appropriate cell type would be tk-, hgprt- or aprt- cells, respectively. Or, normal cells can be used where the selectable marker is dhfr, gpt, neo or hygro which confer resistance to methotrexate, mycophenolic acid, G-418 or hygromycin, respectively.
Preparation of Antibodies
Antibodies that selectively recognize one or more epitopes of the peptides of the present invention are also encompassed by the invention. Such antibodies include, e.g., polyclonal antibodies, monoclonal antibodies, chimeric antibodies, human antibodies, single chain antibodies, Fab fragments, F(ab’), fragments, molecules produced using a Fab expression library, human antibodies (polyclonal or monoclonal) produced in transgenic mice and epitope binding fragments of any of the above.
The antibodies can be utilized in conjunction with gene therapy techniques to evaluate, for example, the expression of the peptides of the present invention either in cells or directly in patient tissues in which these genes have been introduced.
For the production of antibodies, a variety of host animals may be immunized by injection with peptides of the present invention, anti-peptide antibody, anti-peptide analog antibody, or immunogenic fragments thereof by methods well known in the art. For preparation of an anti-idiotype antibody the immunogen is an anti-peptide antibody or anti-peptide analog ) antibody. Production of anti-idiotype antibodies is described, for example, in US Patent No. 4,699,880. Suitable host animals include, but are not limited to, rabbits, mice, goats, sheep and horses. Immunization techniques are well known in the art. Polyclonal antibodies can be purified from the serum of the immunized animals, or monoclonal antibodies can be generated by 26
Y methods that are well known in the art. These techniques include, but are not limited to, the well- - known hybridoma techniques of Kohler and Milstein, human B-cell hybridoma techniques, and the EBV hybridoma technology. Monoclonal antibodies may be of any immunoglobulin class, ’ including IgG, IgE, IgM, IgA, and IgD containing either kappa or lambda light chains.
Techniques of producing and using chimeric antibodies are known in the art, and are described in, for example, U.S. Pat. Nos. 5,807,715; 4,816,397; 4,816,567; 5,530,101; 5,585,089; 5,693,761; 5,693,762; 6,180,370; and 5,824,307.
Assays Determining CRF;R Selectivity
The pharmacological activity and selectivity of the peptides of present invention can be determined using published test procedures. See, e.g, U.S. Pat. Appl. No. 09/799978. Because
CRF;R and CRFR are homologous proteins, it is expected that a certain proportion of agonists for CRF,R will also function as agonists of CRF;R. As discussed above, activation of CRFiR induces activation of the HPA axis since increased corticosteroid production leads to skeletal muscle atrophy. In most cases in which an increase in muscle mass or function is desired, it is not desirable to activate the HPA axis. When selecting a peptide useful for the treatment of a
CRE,R modulated disorder, which is not related to muscular dystrophy, it is preferable that the peptide be selective for CRF:R. Preferably the peptide exhibits 10-fold selectivity for CRF:R versus CRFR (i.e., 10-fold more active against CRF:R than against CRF,R), more preferably 100-fold selectivity and most preferably 1000-fold or greater selectivity. As published studies have demonstrated a benefit of corticosteroid therapy in the treatment of muscular dystrophies, it may be beneficial that a CRF;R agonist retain some level of CRF;R agonism when used to treat muscular dystrophies. Thus, for the treatment of muscular dystrophies, a peptide of lower selectivity that activates the CRFR as well as the CRF;R, over a similar concentration range, is preferred. Preferably the peptide is 100-fold selective for CRF;R versus CRF;R, more preferably 10-fold selective and most preferably not selective for CRF2R versus CRF;R (i.e., the activity of the candidate compound is substantially similar for CRF:R and CRFR). Also, in this case, it may be more preferable that the peptide is full agonist for CRF,R while being a partial agonist for
CRF,R. Such a peptide would therefore have a built-in limit to the maximum degree of cortisol elevation and potential for muscle atrophy, while the anti-atrophy effect modulated through the
CRF,R could be enhanced by increasing the dose. One of skill in the art would be able to readily determine whether a peptide is a full or partial agonist of the CRFiR or CRF;R using methods known in the art.
Because it is desirable to discriminate binding between CRF,R, as compared with
CRFR, the assays described above may be conducted using a cell, or membrane from a cell, } which expresses only CRF,R or the assays can be conducted with a recombinant source of
CRF,R. Cells expressing both forms of CRFR may be modified using homologous . recombination to inactivate or otherwise disable the CRF;R gene. Alternatively, if the source of
CRFR contains more than one CRFR type, the background signal produced by the receptor which is not of interest must be subtracted from the signal obtained in the assay. The background response can be determined by a number of methods, including elimination of the signal from the
CRFR which is not of interest by use of antisense, antibodies or selective antagonists. Known antagonists of CRFRs include, but are not limited to, antalarmin (CRF;R selective), antisauvagine-30 (CRF;R selective) and astressin (nonselective for CRFiR / CRF,R).
To determine whether a peptide activates CRF,R and/or CRFiR, the assays are typically cell-based; however, cell-free assays are known which are able to differentiate agonist and antagonist binding as described above. Cell-based assays include the steps of contacting cells which express CRFR or CRF,R with a peptide of the present invention or control and measuring activation of the CRFR by measuring the expression or activity of components of the CRFR signal transduction pathways.
As described in the background section above, CRFRs appear to couple through several different pathways including Gos, Gaq OF Gui, depending upon the cell type. It is thought that agonist activation of CRFR allows the receptor to signal via any of these pathways, provided that = the necessary pathway components are present in the particular cell type. Thus, to assay a particular peptide of the present invention for CRFR activation, an assay can use any of the signal oC transduction pathways as the readout even if the relevant cell type for treatment, in vivo, couples
CREFR to skeletal muscle atrophy via a different pathway. One of ordinary skill in the art would recognize that an assay would be effective for identifying useful peptide agonists independent of the pathway by which receptor activation was measured. Assays for measuring activation of these signaling pathways are known in the art.
For example, after contact with a peptide of the present invention, lysates of the cells can be prepared and assayed for induction of cAMP. cAMP is induced in response to Gq activation.
Because Gs is activated by receptors other than CRFR and because a test peptide may be exerting its effect through CRFRs or by another mechanism, two control comparisons are relevant for determining whether the peptide increases levels of cAMP via activation of a CRFR.
One control compares the cAMP level of cells contacted with the peptide and the cAMP level of cells contacted with a control compound (i.e., the vehicle in which the peptide is dissolved). If : the peptide increases cAMP levels relative to the control compound this indicates that the peptide is increasing cAMP by some mechanism. The other control compares the cAMP levels of a ) CRFR expressing cell line and a cell line that is essentially the same except that it does not express the CRFR, where both of the cell lines have been treated with the peptide. If the peptide elevates cAMP levels in the CRFR expressing cell line relative to the cell line that does not express CRFRSs, this is an indication that the peptide elevates CAMP via activation of the CRFRs.
In one example, cAMP induction is measured with the use of DNA constructs containing the cAMP responsive element linked to any of a variety of reporter genes can be introduced into cells expressing CRFRs. Such reporter genes include, but are not limited to, chloramphenicol acetyltransferase (CAT), luciferase, glucuronide synthetase, growth hormone, fluorescent proteins (e.g., Green Fluorescent Protein), or alkaline phosphatase. Following exposure of the cells to the peptide, the level of reporter gene expression can be quantitated to determine the peptide’s ability to increase cAMP Jevels and thus determine the peptide’s ability to activate the
CRFR.
The cells useful in this assay are the same as for the CRFR binding assay described above, except that cells utilized in the activation assays preferably express a functional receptor which gives a statistically significant response to CRF or one or more CRF analog. In addition to using cells expressing full length CRFRs, cells can be engineered which express CRFRs containing the ligand binding domain of the receptor coupled to, or physically modified to contain, reporter elements or to interact with signaling proteins. For example, a wild type CRFR or CRFR fragment can be fused to a G-protein resulting in activation of the fused G-protein upon agonist binding to the CRFR portion of the fusion protein. Siefert, R. et al., Trends Pharmacol.
Sci., 20: 383-389 (1999). The cells should also preferably possess a number of characteristics, depending on the readout, to maximize the inductive response by CRF or the CRF analog, for example, for detecting a strong induction of a CRE reporter gene; (a) a low natural level of cAMP; (b) G proteins capable of interacting with CRFRs; (c) a high level of adenylyl cyclase; (d) a high level of protein kinase A; (e) a low level of phosphodiesterases; and (f) a high level of cAMP response element binding protein would be advantageous. To increase the response to } CRF or a CRF analog, host cells could be engineered to express a greater amount of favorable factors or a lesser amount of unfavorable factors. In addition, alternative pathways for induction of the CRE reporter could be eliminated to reduce basal levels.
Assays to Determine Pharmacological Activity
The pharmacological activity of the peptides of present invention can be determined } using published test procedures. For example, models of skeletal muscle atrophy or hypertrophy include both in vitro cell culture models and in vivo animal models of skeletal muscle atrophy. .
In vitro models of skeletal muscle atrophy are known in the art. Such models are described, for example, in Vandenburgh, H.H., In Vitro, 24:609-619 (1988), Vandenburgh, H.H. et al., J. Biomechanics, 24 Suppl 1:91-99 (1991), Vandenburgh, HH et al., In Vitro Cell. Dev.
Biol., 24(3):166-174 (1988), Chromiak, J.A., et al., In Vitro Cell. Dev. Biol. Anim., 34(9):694-703 (1998), Shansky, J., et al., In Vitro Cell. Dev. Biol. Anim., 33(9):659-661 (1997), Perrone, C.E. et al., J. Biol. Chem., 270(5):2099-2106 (1995), Chromiac, J.A. and Vandenburgh, H.H., J. Cell.
Physiol., 159(3):407-414 (1994), and Vandenburgh, H.H. and Karlisch, P., In Vitro Cell. Dev.
Biol., 25(7):607-616 (1989).
A variety of animal models for skeletal muscle atrophy are known in the art, such as those described in the following references: Herbison, G.J., et al. Arch. Phys. Med. Rehabil., 60:401-404 (1979), Appell, H-J. Sports Medicine 10:42-58 (1990), Hasselgren, P-O. and Fischer,
JE. World J. Surg., 22:203-208 (1998), Agbenyega, E.T. and Wareham, A.C. Comp. Biochem.
Physiol, 102A:141-145 (1992), Thomason, D.B. and Booth, FW. J. Appl. Physiol., 68:1-12 (1990), Fitts, R.H., et al. J. Appl. Physiol., 60:1946-1953 (1986), Bramanti, P., et al. Int. J. Anat.
Embryol. 103:45-64 (1998), Cartee, G.D. J. Gerontol. A Biol. Sci. Med. Sci., 50:137-141 (1995),
Cork, L.C., et al. Prog. Clin. Biol. Res., 229:241-269 (1987), Booth, F.W. and Gollnick, P.D.
Med. Sci. Sports Exerc., 15:415-420 (1983), Bloomfield, S.A. Med. Sci. Sports Exerc., 29:197- 206 (1997). Preferred animals for these models are mice and rats. These models include, for ~~ example, models of disuse-induced atrophy such as casting or otherwise immobilizing limbs, hind limb suspension, complete animal immobilization, and reduced gravity situations. Models of nerve damage induced atrophy include, for example, nerve crush, removal of sections of nerves which innervate specific muscles, toxin application to nerves and infection of nerves with viral, bacterial or eukaryotic infectious agents. Models of glucocorticoid-induced atrophy include application of atrophy-inducing doses of exogenous glucocorticoid to animals, and stimulation of endogenous corticosteroid production, for example, by application of hormones that activate the hypothalamus-pituitary-adrenal (HPA) axis. Models of sepsis-induced atrophy include, for example, inoculation with sepsis-inducing organisms such as bacteria, treatment of the animal with immune-activating compounds such as bacterial cell wall extract or endotoxin, and puncture of inte--inal walls. Models of cachexia-induced atrophy include, for example, inoculation of an animal with tumorigenic cells with cachexia forming potential, infection of an animal with . infectious agents (such as viruses which cause AIDS) which result in cachexia and treatment of an animal with hormones or cytokines such as CNTF, TNF, IL-6, IL-1, etc. which induce . cachexia. Models of heart failure-induced atrophy include the manipulation of an animal so that heart failure occurs with concomitant skeletal muscle atrophy. Neurodegenerative disease- induced atrophy models include autoimmune animal models such as those resulting from immunization of an animal with neuronal components. Muscular dystrophy-induced models of atrophy include natural or man-made genetically induced models of muscular dystrophy such as the mutation of the dystrophin gene which occurs in the Mdx mouse.
Animal models of skeletal muscle hypertrophy include, for example, models of increased limb muscle use due to inactivation of the opposing limb, reweighing following a disuse atrophy inducing event, reutilization of a muscle which atrophied because of transient nerve damage, increased use of selective muscles due to inactivation of a synergistic muscle (e.g., compensatory hypertrophy), increased muscle utilization due to increased load placed on the muscle and hypertrophy resulting from removal of the glucocorticoid after glucocorticoid-induced atrophy.
Preferred animal atrophy models include the sciatic nerve denervation atrophy model, glucocorticoid-induced atrophy model, and the leg casting disuse atrophy model that are described in further detail below.
The sciatic nerve denervation atrophy model involves anesthetizing the animal followed by the surgical removal of a short segment of either the right or left sciatic nerve, e.g., in mice the sciatic nerve is isolated approximately at the midpoint along the femur and a 3-5 mm segment is removed. This denervates the lower hind limb musculature resulting in atrophy of these muscles.
Typically, innervation to the biceps femoris is left intact to provide satisfactory motion of the knee for virtually normal ambulation. Typically, in untreated animals, muscle mass of the denervated muscles is reduced 30-50% ten days following denervation. Following denervation, test peptides are administered e.g., by injection or by continuous infusion, e.g., via implantation of an osmotic minipump (e.g., Alzet, Palo Alto, CA), to determine their effect on denervation induced skeletal muscle atrophy. At various times following denervation, the animals are ) euthanized and lower leg muscles are dissected rapidly from both the denervated and nondenervated legs, the muscles, cleaned of tendons and connective tissue, are weighed. The extent of atrophy in the affected muscles is analyzed, for example, by measuring muscle mass, muscle cross-sectional area, myofiber cross-sectional area or contractile protein content.
The glucocorticoid-induced atrophy model involves the administration of a glucocorticoid to the test animal, e.g., 1.2 mg/kg/day of dexamethasone in the drinking water. .
Typically, in untreated animals, skeletal muscle mass is reduced 30-50% following ten days of dexamethasone administration. Concomitantly with, or following glucocorticoid administration, ‘ test peptides are administered e.g., by injection or by continuous infusion to determine their effect on glucocorticoid-induced skeletal muscle atrophy. At various times following glucocorticoid administration, the extent of atrophy in the affected muscles is analyzed as described above for the denervation model.
The leg casting disuse atrophy model involves casting one hind leg of an animal from the knee down through the foot. Typically, muscle mass is reduced 20-40% after ten days of casting.
Following casting, test peptides are administered by injection or by continuous infusion via implantation of an osmotic minipump (e.g., Alzet, Palo Alto, CA) to determine their effect on leg casting induced skeletal muscle atrophy. At various times following leg casting, the extent of atrophy in the affected muscles is analyzed as described above for the denervation model.
Bone activity of the subject peptides can be conveniently demonstrated using an assay designed to test the ability of the subject compounds to increase bone volume, mass, or density.
An example of such assays is the ovariectomized rat assay.
In the ovariectomized rat assay, six-month old rats are ovariectomized, aged 2 months, and then dosed once a day subcutaneously with a test compound. Upon completion of the study, bone mass and/or density can be measured by dual energy x-ray absorptometry (DXA) or peripheral quantitative computed tomography (pQCT), or micro computed tomography (mCT).
Alternatively, static and dynamic histomorphometry can be used to measure the increase in bone oo volume or formation.
Compositions
Another aspect of this invention is compositions which comprise: (a) a safe and effective amount of a peptide of the present invention; and (b) a pharmaceutically-acceptable carrier.
Standard pharmaceutical formulation techniques are used, such as those disclosed in Remington’s
Pharmaceutical Sciences, Mack Publishing Company, Easton, Pa., latest edition.
A "safe and effective amount" means an amount of the peptide of the invention sufficient to significantly induce a positive modification in the condition to be treated, but low enough to avoid serious side effects (such as toxicity, irritation, or allergic response) in an animal, preferably a mammal, more preferably a human subject, in need thereof,
commensurate with a reasonable benefit/risk ratio when used in the manner of this . invention. The specific "safe and effective amount" will, obviously, vary with such factors as the particular condition being treated, the physical condition of the subject, the duration : of treatment, the nature of concurrent therapy (if any), the specific dosage form to be used, the carrier employed, the solubility of the peptide therein, and the dosage regimen desired for the composition. One skilled in the art may use the following teachings to determine a “safe and effective amount” in accordance with the present invention. Spilker B., Guide to
Clinical Studies and Developing Protocols, Raven Press Books, Ltd., New York, 1984, pp. 7-13, 54-60; Spilker B., Guide to Clinical Trials, Raven Press, Ltd., New York, 1991, pp. 93-101; Craig
C., and R. Stitzel, eds., Modern Pharmacology, 2d ed., Little, Brown and Co., Boston, 1986, pp. 127-33; T. Speight, ed., Avery's Drug Treatment: Principles and Practice of Clinical
Pharmacology and Therapeutics, 3d ed., Williams and Wilkins, Baltimore, 1987, pp. 50-56; R.
Tallarida, R. Raffa and P. McGonigle, Principles in General Pharmacology, Springer-Verlag,
New York, 1988, pp. 18-20.
In addition to the subject peptide, the compositions of the subject invention contain a pharmaceutically acceptable carrier. The term "pharmaceutically-acceptable carrier," as used herein, means one or more compatible solid or liquid filler diluents or encapsulating substances which are suitable for administration to an animal, preferably a mammal, more preferably a - human. The term "compatible", as used herein, means that the components of the composition are capable of being commingled with the subject peptide, and with each other, in a manner such that there is no interaction that would substantially reduce the pharmaceutical efficacy of the composition under ordinary use situations. Pharmaceutically-acceptable carriers must, of course, be of sufficiently high purity and sufficiently low toxicity to render them suitable for administration to the animal, preferably a mammal, more preferably a human being treated.
Some examples of substances which can serve as pharmaceutically-acceptable carriers or components thereof are: sugars, such as lactose, glucose and sucrose; starches, such as corn starch and potato starch; cellulose and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose, and methyl cellulose; powdered tragacanth; malt; gelatin; talc; solid lubricants, such as stearic acid and magnesium stearate; calcium sulfate; vegetable oils, such as peanut oil, cottonseed oil, sesame oil, olive oil, corn oil and oil of theobroma; polyols such as propylene glycol, glycerine, sorbitol, mannitol, and polyethylene glycol; alginic acid; emulsifiers, such as the Tweens®; wetting agents, such sodium lauryl sulfate; coloring agents; flavoring agents;
tableting agents, stabilizers; antioxidants; preservatives; pyrogen-free water; isotonic saline; and phosphate buffer solutions. .
The choice of a pharmaceutically-acceptable carrier to be used in conjunction with the subject compound is basically determined by the way the peptide is to be administered. :
If the subject peptide is to be injected, the preferred pharmaceutically-acceptable carrier is sterile, physiological saline, with a blood-compatible colloidal suspending agent, the pH of which has been adjusted to about 7.4.
In particular, pharmaceutically-acceptable carriers for systemic administration include sugars, starches, cellulose and its derivatives, malt, gelatin, talc, calcium sulfate, vegetable oils, synthetic oils, polyols, alginic acid, phosphate buffer solutions, emulsifiers, isotonic saline, and pyrogen-free water. Preferred carriers for parenteral administration include propylene glycol, ethyl oleate, pyrrolidone, ethanol, and sesame oil. Preferably, the pharmaceutically-acceptable carrier, in compositions for parenteral administration, comprises at least about 90% by weight of the total composition.
The compositions of this invention are preferably provided in unit dosage form. As used herein, a "unit dosage form" is a composition of this invention containing an amount of a Formula (I) peptide that is suitable for administration to an animal, preferably a mammal, more preferably a human subject, in a single dose, according to good medical practice.
These compositions preferably contain from about 0.1 mg (milligrams) to about 1000 mg, more preferably from about 0.5 mg to about 500 mg, more preferably from about 1 mg to — - about 30 mg, of a peptide of Formula (1). ~~
The compositions of this invention may be in any of a variety of forms, suitable, for example, for oral, rectal, topical, nasal, ocular or parenteral administration. Depending upon the particular route of administration desired, a variety of pharmaceutically-acceptable carriers well-known in the art may be used. These include solid or liquid fillers, diluents, hydrotropes, surface-active agents, and encapsulating substances. Optional pharmaceutically-active materials may be included, which do not substantially interfere with the CRF;R agonist activity of the peptides of Formula (I). The amount of carrier employed in conjunction with the Formula (I) peptide is sufficient to provide a practical quantity of material for administration per unit dose of the Formula (I) peptide. Techniques and compositions for making dosage forms useful in the methods of this invention are described in the following references,: Modern Pharmaceutics, Chapters 9 and 10 (Banker & Rhodes,
editors, 1979); Lieberman et al., Pharmaceutical Dosage Forms: Tablets (1981); and Ansel, . Introduction to Pharmaceutical Dosage Forms 2d Edition (1976).
Various oral dosage forms can be used, including such solid forms as tablets, ) capsules, granules and bulk powders. These oral forms comprise a safe and effective amount, usually at least about 5%, and preferably from about 25% to about 50%, of the peptide. Tablets can be compressed, tablet triturates, enteric-coated, sugar-coated, film- coated, or multiple-compressed, containing suitable binders, lubricants, diluents, disintegrating agents, coloring agents, flavoring agents, flow-inducing agents, and melting agents. Liquid oral dosage forms include aqueous solutions, emulsions, suspensions, solutions and/or suspensions reconstituted from non-effervescent granules, and effervescent preparations reconstituted from effervescent granules, and containing suitable solvents, preservatives, emulsifying agents, suspending agents, diluents, sweeteners, melting agents, coloring agents and flavoring agents.
The pharmaceutically-acceptable carrier suitable for the preparation of unit dosage forms for peroral administration are well-known in the art. Tablets typically comprise conventional pharmaceutically-compatible adjuvants as inert diluents, such as calcium carbonate, sodium carbonate, mannitol, lactose and cellulose; binders such as starch, gelatin and sucrose; disintegrants such as starch, alginic acid and croscarmelose; lubricants such as magnesium stearate, stearic acid and talc. Glidants such as silicon dioxide can be used to improve flow characteristics of the powder mixture. Coloring agents, such as the FD&C dyes, can be added for appearance. Sweeteners and flavoring agents, such as aspartame, saccharin, menthol, peppermint, and fruit flavors, are useful adjuvants for chewable tablets. Capsules typically comprise one or more solid diluents disclosed above. The selection of carrier components depends on secondary considerations like taste, cost, and shelf stability, which are not critical for the purposes of the subject invention, and can be readily made by a person skilled in the art. In general, the formulation will include the peptide, and inert ingredients which allow for protection against the stomach environment, and release of the biologically active material in the intestine.
The peptide of Formula (I) may be chemically modified so that oral delivery of the derivative is efficacious. Generally, the chemical modification contemplated is the attachment of at least one moiety to the protein molecule itself, where said moiety permits (a) inhibition of proteolysis; and (b) uptake into the blood stream from the stomach or intestine. Also desired is the increase in overall stability of the protein and increase in circulation time in the body.
Examples of such moieties include: polyethylene glycol, copolymers of ethylene glycol and propylene glycol, carboxymethyl cellulose, dextran, polyvinyl alcohol, polyvinyl pyrrolidone and polyproline. Newmark et al., J. Appl. Biochem., 4:185-189 (1982). Other polymers that could be . used are poly-1,3-dioxolane and poly-1,3,6-tioxocane. Preferred for pharmaceutical usage, as indicated above, are polyethylene glycol moieties. .
The location of release may be the stomach, the small intestine (the duodenum, the jejunem, or the ileum), or the large intestine. One skilled in the art has available formulations which will not dissolve in the stomach, yet will release the material in the duodenum or elsewhere in the intestine. Preferably, the release will avoid the deleterious effects of the stomach environment, either by protection of the peptide (or variant) or by release of the biologically active material beyond the stomach environment, such as in the intestine.
To ensure full gastric resistance, a coating impermeable to at least pH 5.0 is preferred.
Examples of the more common inert ingredients that are used as enteric coatings are cellulose acetate trimellitate (CAT), hydroxypropylmethylcellulose phthalate (HPMCP), HPMCP 50, )
HPMCP 55, polyvinyl acetate phthalate (PVAP), Eudragit L30D, Aquateric, cellulose acetate phthalate (CAP), Eudragit L, Eudragit S, and Shellac. These coatings may be used as mixed films. ' Peroral compositions also include liquid solutions, emulsions, suspensions, and the like.
The pharmaceutically-acceptable carriers suitable for preparation of such compositions are well known in the art. Typical components of carriers for syrups, elixirs, emulsions and suspensions include ethanol, glycerol, propylene glycol, polyethylene glycol, liquid sucrose, sorbitol and water. For a suspension, typical suspending agents include methyl cellulose, sodium carboxymethyl cellulose, Avicel® RC-591, tragacanth and sodium alginate; typical wetting agents include lecithin and polysorbate 80; and typical preservatives include methyl paraben and sodium benzoate. Peroral liquid compositions may also contain one or more components such as sweeteners, flavoring agents and colorants disclosed above.
Compositions of the subject invention may optionally include other active agents. Non- limiting examples of active agents are listed in WO 99/15210.
Other compositions useful for attaining systemic delivery of the subject compounds include sublingual, buccal, suppository, nasal and pulmonary dosage forms. Such compositions typically comprise one or more of soluble filler substances such as sucrose, sorbitol and mannitol; and binders such as acacia, microcrystalline cellulose, carboxymethyl cellulose and hydroxypropyl methyl cellulose. Glidants, lubricants, sweeteners, colorants, antioxidants and flavoring agents disclosed above may also be included.
The compositions of this invention can also be administered topically to a subject, . e.g., by the direct laying on or spreading of the composition on the epidermal or epithelial tissue of the subject, or transdermally via a “patch.” An example of a suitable patch : applicator is described in U.S. Patent Application Serial No. 10/054113. Such compositions include, for example, lotions, creams, solutions, gels and solids. These topical compositions preferably comprise a safe and effective amount, usually at least about 0.1%, and preferably from about 1% to about 5%, of the peptide. Suitable carriers for topical administration preferably remain in place on the skin as a continuous film, and resist being removed by perspiration or immersion in water. Generally, the carrier is organic in nature and capable of having dispersed or dissolved therein the peptide. The carrier may include pharmaceutically-acceptable emollients, emulsifiers, thickening agents, solvents and the like.
Methods of Administration
This invention also provides methods of treating CRF,R modulated disorders in a human or other animal subject, by administering a safe and effective amount of a peptide to said subject. The methods of the invention are useful in preventing or treating disorders described above.
Compositions of this invention can be administered topically or systemically.
Systemic application includes any method of introducing a peptide of Formula (I) into the tissues of the body, e.g., intra-articular (especially in treatment of rheumatoid arthritis), intrathecal, epidural, intramuscular, transdermal, intravenous, intraperitoneal, subcutaneous, nasal, pulmonary, sublingual, rectal, and oral administration.
The specific dosage of the peptide to be administered, as well as the duration of treatment, and whether the treatment is topical or systemic are interdependent. The dosage and treatment regimen will also depend upon such factors as the specific peptide used, the treatment indication, the ability of the peptide to reach minimum inhibitory concentrations at : the site of the tissue in need of treatment, the personal attributes of the subject (such as weight), compliance with the treatment regimen, and the presence and severity of any side ‘ effects of the treatment.
Topical administration can be used to deliver the peptide systemically, or to treat a subject locally. The amounts of the peptide to be topically administered depends upon such factors as skin sensitivity, type and location of the tissue to be treated, the composition and carrier (if any) to be administered, the particular peptide to be administered, as well as the . particular disorder to be treated and the extent to which systemic (as distinguished from local) effects are desired. .
The peptides of the present invention can be targeted to specific locations where treatment is need by using targeting ligands. For example, to focus a peptide to treat muscular dystrophy, the peptide is conjugated to an antibody or fragment thereof which is immunoreactive with a skeletal muscle marker as is generally understood in the art. The targeting ligand can also be a ligand suitable for a receptor which is present on skeletal muscle. Any targeting ligand which specifically reacts with a marker for the intended target tissue can be used. Methods for coupling the invention compound to the targeting ligand are well known and are similar to those described below for coupling to carrier.
A peptide of Formula (I) may be administered via a controlled release. For example, the peptide may be administered using intravenous infusion, an implantable osmotic pump, a transdermal patch, liposomes, subcutaneous depot injection containing a biodegradable material, or other modes of administration. In one embodiment, a pump may be used Langer et al., eds.,
Medical Applications of Controlled Release, CRC Pres., Boca Raton, Fla. (1974); Sefton, CRC
Crit. Ref. Biomed. Eng., 14:201 (1987); Buchwald et al., Surgery, 88:507 (1980); Saudek et al.,
N. Engl. J. Med., 321:574 (1989). In another embodiment, polymeric materials can be used.
Langer, 1974, supra; Sefton, 1987, supra; Smolen et al., eds., Controlled Drug Bioavailability, oo Drug Product Design and Performance, Wiley, N.Y. (1984); Ranger et al., J. Macromol. Sci.
Rev. Macromol. Chem., 23:61 (1983); see also Levy et al., Science, 228:190 (1985); During et al,
Ann. Neurol., 25:351 (1989); Howard et al, J. Neurosurg., 71:105 (1989). In yet another embodiment, a controlled release system can be placed in proximity of the therapeutic target thus requiring only a fraction of the systemic dose. See. e.g., Goodson, in Medical Applications of
Controlled Release, vol. 2, pp. 115-138 (1984). In yet another embodiment, a polymer-based drug-delivery system wherein drugs are delivered from polymer or lipid systems. These systems deliver a drug by three general mechanisms: (1) diffusion of the drug species from or through the system; (2) a chemical or enzymatic reaction leading to degradation of the system, or cleavage of the drug from the system; and (3) solvent activation, either through osmosis or swelling of the system. Suitable systems are described in review articles: Langer, Robert, “Drug delivery and targeting,” Nature: 392 (Supp):5-10 (1996); Kumar, Majeti N. V., “Nano and Microparticles as
Controlled Drug Delivery Devices,” J Pharm Pharmaceut Sci, 3(2):234-258 (2000); Brannon-
Peppas, “Polymers in Controlled Drug Delivery,” Medical Plastics and Biomaterials, (Nov. . 1997). See also, Langer, 1990, supra; Treat et al., in Liposomes in the Therapy of Infectious
Disease and Cancer, Lopez-Berestein and Fidler (eds.), Liss, New York, pp. 353-365 (1989); ’ Langer, Science, 249:1527-1533 (1990). Suitable systems may include: Atrigel™ drug delivery system from Atrix Labs; DepoFoam™ from SkyPharma; polyethylene glycol-based hydrogels from Infimed Therapeutics, Inc.; ReGel™, SQZGel™ oral, HySolviM and ReSolv™ solubilizing drug-delivery systems from MacroMed; ProGelz™ from ProGelz’ Products; and
ProLease™ injectable from Alkermes.
In all of the foregoing, of course, the peptides of the invention can be administered alone or as mixtures, and the compositions may further include additional drugs or excipients as appropriate for the indication.
Gene Therapy
Expression vectors may be used to introduce the nucleic acids of the invention into a cell as part of gene therapy. Such vectors generally have convenient restriction sites located near the promoter sequence to provide for the insertion of nucleic acid sequences. Transcription cassettes may be prepared comprising a transcription initiation region, the target gene or fragment thereof, and a transcriptional termination region. The transcription cassettes may be introduced into a . : variety of vectors, e.g., plasmid, retrovirus, lentivirus, adenovirus and the like, where the vectors are able to transiently or stably be maintained in the cells, usually for a period of at least about one day, more usually for a period of at least about several days to several weeks.
The proteins and nucleic acids of the invention may be introduced into tissues or host cells by any number of routes, including viral infection, microinjection, or fusion of vesicles. Jet injection may also be used for intramuscular administration, as described by Furth et al., Anal.
Biochem., 205:365-368 (1992). The DNA may be coated onto gold microparticles, and delivered intradermally by a particle bombardment device, or “gene gun” as described in the literature.
See, e.g., Tang et al., Nature 356:152-154 (1992), where gold microprojectiles are coated with
DNA, then bombarded into skin cells.
Kits
The present invention includes a kit for preventing or treating a CRF;R modulated disorder comprising: (a) a peptide of Formula (I) in a unit dose form; and (b) usage instructions.
Such a kit preferably includes a number of unit dosages. Such kits can include a card having dosages oriented in the order of their intended use. An example of such a kit is a “blister pack.”
Blister packs are well known in the packaging industry and are widely used for packaging . pharmaceutical unit dosage forms. If desired, a memory aid can be provided, for example in the form of numbers, letters, or other markings or with a calendar insert, designating the days in the : treatment schedule in which the dosages can be administered. Example of a kit is described in
WO 01/45636. Treatments schedules are within the purview of those skilled in the medicinal arts. Non-limiting examples include once daily, weekly, biweekly, monthly, or bimonthly.

Claims (37)

What is claimed is:
1. A non-native peptide according to formula: IVLSLDVPIGLLQILLEQX;oKX3,X2X23X24X2sX26QATTNARILARYV (SEQ ID NO: 531), wherein: (a) Xo is selected from the group consisting of D and E; b) Xa is selected from the group consisting of A and Q; (©) X3, is selected from the group consisting of R, E, and K; (d) X;3 1s selected from the group consisting of A, K, and N; (e) X,4 1s selected from the group consisting of A, E, and L; ® X»s 1s selected from the group consisting of R and K; and (2) Xe is selected from the group consisting of E and Q; or variants thereof having at least 95% identity to the sequence.
2. The peptide of claim 1, wherein Xo is D.
3, The peptide of claim 1, wherein Xj; is A.
4, The peptide of claim 1, wherein X,, is R.
5. The peptide of claim 1, wherein X», is E.
6. The peptide of claim 1, wherein Xy; is A.
7. The peptide of claim 1, wherein X,; is K.
8. The peptide of claim 1, wherein X,4 is A.
9, The peptide of claim 1, wherein X,, is E.
10. The peptide of claim 1, wherein X55 is R.
11. The peptide of claim 1, wherein X,; is E. 56 AMENDED SHEET _
12. A peptide having the amino acid sequence of SEQ ID NO: 121.
13. A non-native peptide having an amino acid sequence according to the formula: NDDPPISIDLPX,,X;;LLRNMIEMARIENEREQAGLNAKYLAEV (SEQ ID NO: 531) wherein: (a) X, is selected from the group consisting of F, L, Q, T, and Y; and (b) Xi; is selected from the group consisting of F, I, Y, H, L, and Q or variants thereof having at least 95% identity to the sequence.
14. A peptide according to claim 13, wherein X,, is F.
15. A peptide according to claim 13, wherein X,, is L.
16. A peptide according to claim 13, wherein X;; is Q.
17. A peptide according to claim 13, wherein X, is T.
18. A peptide according to claim 13, wherein X;, is Y.
19. A peptide according to claim 13, wherein Xj; is F.
20. A peptide according to claim 13, wherein X;; is I.
21. A peptide according to claim 13, wherein X,;is Y.
22. A peptide according to claim 13, wherein X;; is H.
23. A peptide according to claim 13, wherein X;; is L.
24, A peptide according to claim 13, wherein X,; is Q.
25. A peptide according to Claim 13, selected from the group consisting of SEQ ID NOs: 257-260, 261, 264-270, and 271. 57 AMENDED SHEET
26. A peptide selected from the group consisting of SEQ ID NOs: 257-262, 264-270, and
27. A peptide selected from the group consisting of SEQ ID NO: 1, 3, 5, 7, 9, 12-21, 23- 143, 145-147, 149-150, 152-277, 280-285, 287, 289-310, 312-323, 325-327, 329-330, 332, 335-340, 342-348, 354-383, 508-518, and 519.
28. A pharmaceutical composition having the activity of an agonist of a corticotropin releasing factor 2 receptor, comprising: (a) a safe and effective amount of a peptide of claim 1; and ®) a pharmaceutically acceptable carrier.
29. A pharmaceutical composition having the activity of an agonist of a corticotropin releasing factor 2 receptor, comprising: (a) a safe and effective amount of a peptide of claim 12; and (b) a pharmaceutically acceptable carrier.
30. A pharmaceutical composition having the activity of an agonist of a corticotropin releasing factor 2 receptor, comprising: (a) a safe and effective amount of a peptide of claim 13; and (®) a pharmaceutically acceptable carrier.
31. A pharmaceutical composition having the activity of an agonist of a corticotropin releasing factor 2 receptor, comprising: (a) a safe and effective amount of a peptide of claim 26; and ®) a pharmaceutically acceptable carrier.
32. A pharmaceutical composition having the activity of an agonist of a corticotropin releasing factor 2 receptor, comprising: (a) a safe and effective amount of a peptide of claim 27; and ®) a pharmaceutically acceptable carrier. 58 AMENDED SHEET )
,
33. Use of a peptide according to any one of claims 1 to 27, in the manufacture of a medicament for increasing skeletal muscle mass or function in a subject in which such an increase is desirable, comprising: (a) identifying a subject in which an increase in muscle mass or function is desirable; and (b) administering to the subject a safe and effective amount of a CRF,R agonist.
34. The use according to Claim 33, wherein the subject in whom such an increase is desirable is characterized by the presence of muscular dystrophy or muscle atrophy.
35. A nucleic acid encoding a peptide having the activity of an agonist of CRF,R and characterized by a nucleotide sequence which defines the amino acid sequence of a peptide according to any one of claims 1 to 27.
36. An antibody specific in respect to a peptide having the activity of an agonist of CRF,R and prepared with use of a peptide according to any one of claims 1 to 27.
37. Ait for preventing or treating a CRF,R modulated disorder comprising: (a) a peptide of any one of claims 1 to 27 in a unit dose form; and (b) usage instruction. 59 AMENDED SHEET
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