WO2024020522A1 - Compounds and methods for the targeted degradation of irak-4 - Google Patents

Compounds and methods for the targeted degradation of irak-4 Download PDF

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Publication number
WO2024020522A1
WO2024020522A1 PCT/US2023/070657 US2023070657W WO2024020522A1 WO 2024020522 A1 WO2024020522 A1 WO 2024020522A1 US 2023070657 W US2023070657 W US 2023070657W WO 2024020522 A1 WO2024020522 A1 WO 2024020522A1
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compound
alkyl
mmol
disease
independently selected
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PCT/US2023/070657
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French (fr)
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Erika Marina Vieira ARAUJO
Jennifer L. CANTLEY
Hanqing Dong
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Arvinas Operations, Inc.
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Publication of WO2024020522A1 publication Critical patent/WO2024020522A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/505Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
    • A61K31/519Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K45/00Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
    • A61K45/06Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D519/00Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00

Definitions

  • E3 ubiquitin ligases like Cereblon confer substrate specificity for ubiquitination, and therefore are more attractive therapeutic targets than general proteasome inhibitors due to their specificity for certain protein substrates.
  • Bifunctional compounds such as those described in U.S. Patent Application Publication Nos. 2015/0291562 and 2014/0356322 (both incorporated herein by reference), function to recruit endogenous proteins to an E3 ubiquitin ligase for ubiquitination and degradation.
  • the publications describe bifunctional or proteolysis targeting chimeric compounds (PROTAC® protein degraders), which find utility as modulators of targeted ubiquitination of a variety of polypeptides and proteins, which are then degraded via the proteasome system.
  • Interleukin-1 (IL-1) Receptor-Associated Kinase-4 (IRAK-4) is a serine/threonine kinase enzyme that plays an essential role in signal transduction by Toll/IL-1 receptors (TIRs).
  • TIRs Toll/IL-1 receptors
  • IRAK-1R interleukin-1 receptor
  • TLRs Toll-like receptors
  • IRAK-1 , IRAK-2, IRAK-3, and IRAK-4 There are four members in the mammalian IRAK family: IRAK-1 , IRAK-2, IRAK-3, and IRAK-4.
  • IRAK-4 possesses kinase-dependent signaling activity (Lee KL, Ambler CM, Anderson DR, et al. J Med Chem. 2017;60(13):5521-42), degradation of IRAK-4 is a valuable inhibition and degradation target by small molecules.
  • compounds that degrade the IRAK-4 protein kinase are useful in the treatment of a variety of indications, including cancer and inflammation.
  • compounds of Formula I: or a pharmaceutically acceptable salt thereof are provided herein.
  • the compound of Formula I is a compound of Formulae Ih, li, or Ij:
  • the compound of Formula I is a compound of Formulae Ik, Im, Io, or Ip: or a pharmaceutically acceptable salt thereof.
  • the compound of Formula I is a compound of Formulae Iq or Ir:
  • compositions comprising any one of the compounds described herein and a pharmaceutically acceptable excipient.
  • methods of treating a disease or disorder comprising administering to a subject an effective amount of any one of the compounds described herein.
  • DETAILED DESCRIPTION Provided herein are compounds that degrade the IRAK-4 protein kinase. As such, these compounds, as well as pharmaceutical compositions that comprise these compounds, are useful in the treatment of a variety of indications, including cancer and inflammation diseases and disorders such as rheumatoid arthritis. Definitions In the specification, the singular forms (e.g., “a,” “an,” “the,” etc.) also include the plural, unless the context clearly dictates otherwise.
  • compositions are described as having, including, or comprising specific components, it is contemplated that compositions also consist essentially of, or consist of, the recited components.
  • hal refers to an atom selected from the group consisting of fluorine, chlorine, bromine, and iodine.
  • alkyl refers to saturated, straight-chain or branched hydrocarbon radicals containing, in certain embodiments, from one to twenty, including from one to ten, or from one to six, carbon atoms. Branched means that one or more lower C 1-6 alkyl groups such as methyl, ethyl, or propyl are attached to a linear alkyl chain. Exemplary alkyl groups include methyl, ethyl, n-propyl, i-propyl, n-butyl, t-butyl, n-pentyl, and 3-pentyl.
  • C 1-6 alkyl radicals include, but are not limited to, methyl, ethyl, propyl, isopropyl, butyl, tert-butyl, neopentyl, n-hexyl radicals; and examples of C 1-20 alkyl radicals include, but are not limited to, methyl, ethyl, propyl, isopropyl, n-butyl, tert-butyl, neopentyl, n-hexyl, heptyl, octyl radicals.
  • C 1-20 alkyl radicals include but are not limited to hexadecamethyl, hexadecaethyl, hexadecopropyl, octadecamethyl, octadecaethyl, octadecapropyl and the like.
  • haloalkyl refers to an alkyl, alkenyl or alkynyl, including straight-chain and branched, that is substituted with one or more halogens or halo groups. Examples of haloalkyl include but are not limited to CF 3 , CH 2 CF 3 , and CCl 3 .
  • cycloalkyl denotes a monovalent group derived from a monocyclic or polycyclic saturated carbocyclic ring compound. Included within the term “cycloalkyl” are C 3-10 ring members C 3-8 ring members, and C 3-6 ring members. Also included within the term “cycloalkyl” are monocyclic C 4 , C 5 , C 6 , and C 7 cycloalkyl groups. Cycloalkyl groups can include mono- or bicyclic (e.g., having two fused or bridged rings) or spirocyclic ring systems.
  • C 3-8 cycloalkyl (3- to 8-membered cycloalkyl) include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclopentyl and cyclooctyl; and examples of C 3-12 cycloalkyl include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, bicyclo [2.2.1] heptyl, and bicyclo [2.2.2] octyl and the like.
  • Heterocyclyl or “heterocycloalkyl,” as used herein, are cyclic systems containing carbon and at least one heteroatom selected from N, O, S, and P, wherein there is not delocalized ⁇ electrons (aromaticity) shared among the ring carbon or heteroatoms, i.e., the cyclic ring system in non-aromatic. Included within the term “heterocycloalkyl” are 3–10 ring members, 4–7 ring members, 3–6 ring members, or 4–6 ring members. Also included within the term “heterocycloalkyl” are monocyclic 4-, 5-, 6- and 7-membered heterocycloalkyl groups.
  • Heterocycloalkyl groups can include mono- or bicyclic (e.g., having two fused or bridged rings) or spirocyclic ring systems.
  • the heterocycloalkyl group is a monocyclic group having 1, 2 or 3 heteroatoms independently selected from nitrogen, sulfur, and oxygen.
  • the heterocycloalkyl ring structure may be substituted by one or more substituents. The substituents can themselves be optionally substituted.
  • heterocyclyl rings include, but are not limited to, oxetanyl, azetidinyl, tetrahydrofuranyl, tetrahydropyranyl, pyrrolidinyl, oxazolinyl, oxazolidinyl, thiazolinyl, thiazolidinyl, pyranyl, thiopyranyl, tetrahydropyranyl, dioxalinyl, piperidinyl, morpholinyl, thiomorpholinyl, thiomorpholinyl S-oxide, thiomorpholinyl S-dioxide, piperazinyl, azepinyl, oxepinyl, diazepinyl, tropanyl, oxazolidinonyl, and homotropanyl.
  • aryl means an aromatic carbocyclic system containing 1, 2 or 3 rings, wherein such rings may be fused, wherein fused is defined above. If the rings are fused, one of the rings must be fully unsaturated and the fused ring(s) may be fully saturated, partially unsaturated or fully unsaturated.
  • aryl includes, but is not limited to, phenyl, naphthyl, indanyl, and 1,2,3,4-tetrahydronaphthalenyl.
  • aryl groups have 6 carbon atoms.
  • aryl groups have from six to ten carbon atoms. In embodiments, aryl groups have from six to sixteen carbon atoms.
  • the aryl group has six to ten carbon atoms.
  • heteroaryl means an aromatic carbocyclic system containing 1, 2, 3, or 4 heteroatoms selected independently from N, O, and S and having 1, 2, or 3 rings wherein such rings may be fused, wherein fused is defined above.
  • heteroaryl includes, but is not limited to, furanyl, thienyl, oxazolyl, thiazolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, isoxazolyl, isothiazolyl, oxadiazolyl, thiadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, imidazo[1,2-a]pyridinyl, pyrazolo[1,5-a]pyridinyl, 5,6,7,8- tetrahydroisoquinolinyl, 5,6,7,8-tetrahydroquinolinyl, 6,7-dihydro-5H-cyclopenta[b]pyridinyl, 6,7-dihydro-5H-cyclopenta-[c]pyridinyl, 1,4,5,6-tetrahydrocyclopenta[c
  • heteroaryl is 5-10 membered heteroaryl. In another embodiment, heteroaryl is 5-6 membered heteroaryl. It is to be understood that if an aryl, heteroaryl, cycloalkyl, or heterocyclyl moiety may be bonded or otherwise attached to a designated moiety through differing ring atoms (i.e., shown or described without denotation of a specific point of attachment), then all possible points are intended, whether through a carbon atom or, for example, a trivalent nitrogen atom.
  • pyridinyl means 2-, 3- or 4-pyridinyl
  • thienyl means 2- or 3-thienyl, and so forth.
  • the term “independently selected” is used herein to indicate that, for a variable which occurs in more than one location in a genus, the identity of the variable is determined separately in each instance. For example, if R x appears as a substituent on two different atoms, the two instances of R x may be the same moiety, or different moieties. The same is true if a single atom is substituted with more than one instance of R x . The identity of R x in each instance is determined independently of the identity of the other(s). It will be appreciated that the compounds, as described herein, may be substituted with one, two, three, four, five or more (up to the total possible number of substituents for the particular compound) independently selected substituents or functional moieties.
  • substituted refers to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent.
  • substituents contained in formulas disclosed herein refer to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent.
  • the substituent may be either the same or different at each position.
  • substituted is contemplated to include all permissible substituents of organic compounds.
  • the permissible substituents may include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents of organic compounds.
  • heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valencies of the heteroatoms.
  • the nitrogen and sulfur heteroatoms may optionally be oxidized, and the nitrogen heteroatom may optionally be quaternized.
  • substituents on the moieties disclosed herein include, but are not limited to, alkenyl, alkynyl, halogen, haloalkyl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, heteroaryl, aryl, cycloalkyl, cycloalkenyl, non-aromatic heterocycle, hydroxyl, carbamoyl, oxo, amino, nitro, azido, -SH, and -CN.
  • compounds of the disclosure may optionally be substituted with one or more substituents, such as those described generally above, or as exemplified by particular classes, subclasses, and species of the disclosure.
  • an optionally substituted group may have a substituent at any or each substitutable position of the group, and when more than one position in any given structure is substituted with more than one substituent independently selected from a specified group, the substituent may be either the same or different at each substituted every position.
  • floating substituents on ring-containing scaffolds e.g., cycloalkyl, heterocycloalkyl, aryl, and heteroaryl
  • the substituent covers, for example, both
  • a “pharmaceutical composition” is a formulation containing one or more therapeutic agents (e.g., one or more compounds of the present disclosure) in a form suitable for administration to a subject.
  • the pharmaceutical composition is in bulk form, e.g., for storage.
  • the pharmaceutical composition is in unit dosage form. It can be advantageous to formulate compositions in dosage unit form for ease of administration and uniformity of dosage.
  • Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of active reagent calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier.
  • a compound of the present disclosure may be administered in the form of a pharmaceutical composition comprising a pharmaceutically acceptable excipient.
  • the formulation may be adapted for administration by any of a variety of routes including oral, buccal, rectal, vaginal, intranasal, intraocular, transdermal, subcutaneous, intravenous, or intramuscular.
  • pharmaceutical or “pharmaceutically acceptable” when used herein as an adjective, means substantially non-toxic and substantially non-deleterious to the recipient.
  • the phrase “pharmaceutically acceptable” refers to those compounds, materials, compositions, carriers, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
  • the present invention also includes pharmaceutically acceptable salts of the compounds described herein.
  • pharmaceutically acceptable salts refers to derivatives of the disclosed compounds wherein the parent compound is modified by converting an existing acid or base moiety to its salt form.
  • Examples of pharmaceutically acceptable salts include, but are not limited to, mineral or organic acid salts of basic residues such as amines; alkali or organic salts of acidic residues such as carboxylic acids; and the like.
  • the pharmaceutically acceptable salts of the present invention include the non-toxic salts of the parent compound formed, e.g., from non-toxic inorganic or organic acids.
  • the pharmaceutically acceptable salts of the present invention can be synthesized from the parent compound which contains a basic or acidic moiety by conventional chemical methods.
  • such salts can be prepared by reacting the free acid or base forms of these compounds with a stoichiometric amount of the appropriate base or acid in water or in an organic solvent, or in a mixture of the two; generally, non-aqueous media like ether, ethyl acetate, alcohols (e.g., methanol, ethanol, iso-propanol or butanol) or acetonitrile (MeCN) are preferred.
  • non-aqueous media like ether, ethyl acetate, alcohols (e.g., methanol, ethanol, iso-propanol or butanol) or acetonitrile (MeCN) are preferred.
  • suitable salts are found in Remington's Pharmaceutical Sciences, 17 th Ed., (Mack Publishing Company, Easton, 1985), p.1418, Berge et al., J. Pharm.
  • “Pharmaceutically acceptable carrier or excipient” means a carrier or excipient that is useful in preparing a pharmaceutical composition that is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes any excipient that is acceptable for veterinary use and/or human pharmaceutical use.
  • a “pharmaceutically acceptable excipient” as used herein includes both one and more than one such excipient.
  • treat refers to any action providing a benefit to a patient for which the present compounds may be administered, including the treatment of any disease state or condition which is modulated through the target protein to which the present compounds bind.
  • Disease states or conditions including cancer, inflammatory diseases/disorders, autoimmune diseases/disorders, neurodegenerative diseases, and/or cardiovascular diseases/disorders, which may be treated using compounds according to the present disclosure are set forth hereinabove.
  • disease state or condition is used to describe any disease state or condition wherein protein dysregulation (i.e., the amount of protein expressed in a patient is elevated) occurs and where degradation of the protein in a subject or patient may provide beneficial therapy or relief of symptoms to a subject or patient in need thereof. In certain instances, the disease state or condition may be cured.
  • neoplasia or “cancer” is used throughout the specification to refer to the pathological process that results in the formation and growth of a cancerous or malignant neoplasm, i.e., abnormal tissue that grows by cellular proliferation, often more rapidly than normal and continues to grow after the stimuli that initiated the new growth cease.
  • neoplasia is used to describe all cancerous disease states and embraces or encompasses the pathological process associated with malignant hematogenous, ascitic and solid tumors.
  • Exemplary cancers which may be treated by the present compounds either alone or in combination with at least one additional anti-cancer agent include squamous-cell carcinoma, basal cell carcinoma, adenocarcinoma, hepatocellular carcinomas, and renal cell carcinomas, cancer of the bladder, bowel, breast, cervix, colon, esophagus, head, kidney, liver, lung, neck, ovary, pancreas, prostate, and stomach; leukemias; benign and malignant lymphomas, particularly Burkitt’s lymphoma and Non-Hodgkin’s lymphoma; benign and malignant melanomas; myeloproliferative diseases; sarcomas, including Ewing’s sarcoma, hemangiosarcoma, Kaposi’s sarcoma, liposarcoma, myosarcomas, peripheral neuroepithelioma, synovial sarcoma, gliomas, astrocytomas, oligodendro
  • Additional cancers which may be treated using compounds according to the present disclosure include, for example, T-lineage Acute lymphoblastic Leukemia (T-ALL), T-lineage lymphoblastic Lymphoma (T-LL), Peripheral T- cell lymphoma, Adult T-cell Leukemia, Pre-B ALL, Pre-B Lymphomas, Large B-cell Lymphoma, Burkitt’s Lymphoma, B-cell ALL, Philadelphia chromosome positive ALL and Philadelphia chromosome positive CML.
  • T-ALL T-lineage Acute lymphoblastic Leukemia
  • T-LL T-lineage lymphoblastic Lymphoma
  • Peripheral T- cell lymphoma Peripheral T- cell lymphoma
  • Adult T-cell Leukemia Pre-B ALL, Pre-B Lymphomas, Large B-cell Lymphoma
  • Burkitt Large B-cell Lymphoma
  • Lymphoma B-cell ALL
  • Philadelphia chromosome positive ALL Philadelphia chromosome
  • A is C(O)N(R a ) or N(R a )C(O);
  • W* is N, C, or CH;
  • W 1 and W 6 are each independently C(O), O, N, CR 2 , C(R 2 ) 2 , or NR 2 ;
  • W 2 , W 3 , W 4 , W 5 , W 7 , W 8 , W 9 , W 10 , W 11 , W 12 , W 13 , W 14 , and W 15 are each independently selected from C, N, CR 2 , C(R 2 ) 2 , and NR 2 , wherein at least three of W 2 , W 3 , W 4 , and W 5 are C, C(R 2 ) 2 , or CR 2 , and wherein at least four of W 7 , W 8 , W 9 , W 10 , W 11 , W 12 , W 13 , W 14 , and W 15 are C, CR 2 , or C(R 2 ) 2
  • A is C(O)N(R a ) or N(R a )C(O);
  • W* is N or C;
  • W 1 and W 6 are each independently C(O), N, CR 2 , or C(R 2 ) 2 ;
  • W 2 , W 3 , W 4 , W 5 , W 7 , W 8 , W 9 , W 10 , W 11 , W 12 , W 13 , W 14 , and W 15 are each independently selected from C, N, CR 2 , C(R 2 ) 2 , and NR 2 , wherein at least three of W 2 , W 3 , W 4 , and W 5 are C, C(R 2 ) 2 , or CR 2 and wherein at least five of W 7 , W 8 , W 9 , W 10 , W 11 , W 12 , W 13 , W 14 , and W 15 are C, CR 2 , or C(R 2 ) 2 ;
  • R is N or C
  • A is C(O)N(R a ) or N(R a )C(O);
  • W* is N or C;
  • W 1 and W 6 are each independently C(O), N, CR 2 , or C(R 2 ) 2 ;
  • W 2 , W 3 , W 4 , W 5 , W 7 , W 8 , W 9 , W 10 , W 11 , W 12 , W 13 , W 14 , and W 15 are each independently selected from C, N, CR 2 , C(R 2 ) 2 , and NR 2 , wherein at least three of W 2 , W 3 , W 4 , and W 5 are C, CR 2 , or C(R 2 ) 2 and wherein at least six of W 7 , W 8 , W 9 , W 10 , W 11 , W 12 , W 13 , W 14 , and W 15 are C, CR 2 , or C(R 2 ) 2 ;
  • R is N or C
  • the ITM of Formula ITM-I is: or a pharmaceutically acceptable salt thereof.
  • the compound is Formulae Ia or Ib:
  • the compound is selected from Formulae Ic, Id, and Ie:
  • ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl.
  • the compound is Formulae If or Ig: or a pharmaceutically acceptable salt thereof, wherein ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl.
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3-10 membered heterocycloalkyl;
  • Q 1 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • R 4 is H and C 1-6 alkyl;
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ;
  • R 6 and R 7 are each independently H or C 1-6 alkyl; and
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 1 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • R 4 is selected from H and C 1-6 alkyl;
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 2 is CR 13 or N;
  • R 9 is selected from H and C 1-6 alkyl;
  • ring B is selected from C 6
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ;
  • each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 3 is CR 13 or N;
  • Q 4 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • R 11 is H or C 1-6 alkyl;
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 2 is CR 13 or N;
  • R 9 is H or C 1-6 alkyl;
  • ring B is selected from phenyl,
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ;
  • each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 3 is CR 13 or N;
  • Q 4 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • R 11 is H or C 1-6 alkyl;
  • the LNK of Formula LNK is selected from Formulae LNK-I, LNK-II, and LNK-III: or a pharmaceutically acceptable salt thereof, wherein Q 5 , Q 6 , Q 7 , Q 8 , Q 9 , and Q 10 are each individually CH or N; W 16 and W 17 are selected from a bond, C(R 14 ) 2 , C(O), and N(R 15 ); each R 14 is individually selected from H, C 1-6 alkyl, and OC 1-6 alkyl; each R 15 is individually selected from H, C 1-6 alkyl, and OC 1-6 alkyl; R 16 is selected from H, halo, CN, C 1-6 alkyl, and OC 1-6 alkyl; p1, p2, p5, and p6 are 1, 2, or 3; p3, p4, and p7 are 0, 1, 2, or 3; and is the point of attachment to ILM or CLM.
  • the compound is selected from Formulae Ih,
  • the compound is selected from Formulae Ik, Im, Io, and Ip: or a pharmaceutically acceptable salt thereof.
  • the compound is Formulae Iq or Ir:
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 1 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • Q 5 , Q 6 , and Q 7 are each individually CH or N;
  • W 16 is selected from a bond, C(R 14 ) 2 , C(O
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3-10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 5 , Q 6 , and Q 7 are each individually CH or N;
  • W 16 is selected from a bond, C(R 14 ) 2 , C(O), and N(R 15 );
  • R 6 and R 7 are each independently H or C 1-6 alkyl; and
  • R 8 is selected from
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3-10 membered heterocycloalkyl; Q 1 is selected from CR 13 , C(R 13 ) 2 , C(O), and N; Q 8 and Q 9 are each individually selected from CH and N;
  • R 4 is H or C 1-6 alkyl;
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3-10 membered heterocycloalkyl;
  • Q 1 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • Q 5 , Q 6 , and Q 7 are each individually selected from CH and N;
  • W 16 is selected from a bond, C(R 14 ) 2 , C(O), and N(R 15
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 2 is CR 13 or N;
  • Q 5 , Q 6 , and Q 7 are each individually selected from CH and N;
  • W 16 is selected from a bond, C(R 14 ) 2 , C(O), and N(R 15 );
  • R 9 is H or C 1-6 alkyl
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3-10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 3 is CR 13 or N;
  • Q 4 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • Q 10 is CH or N;
  • W 17 is selected from a bond, C(R 14 ) 2 , C(O), and N(R 15
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3-10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 2 is CR 13 or N;
  • Q 8 and Q 9 are each individually CH or N;
  • R 9 is H or C 1-6 alkyl;
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 2 is CR 13 or N;
  • Q 5 , Q 6 , and Q 7 are each individually selected from CH and N;
  • W 16 is selected from a bond, C(R 14 ) 2 , C(O), and N(R 15 );
  • R 9 is H or C 1-6 alkyl
  • A is C(O)N(R a ) or N(R a )C(O);
  • R a is selected from H, C 1-6 alkyl, and C 1-6 haloalkyl;
  • R 1 is selected from H, C 1-6 alkyl, OC 1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C 1-6 alkyl, OC 1-6 alkyl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, or three R 3 ; each R 3 is independently selected from H, C 1-6 alkyl, C 3-10 cycloalkyl, and 3–10 membered heterocycloalkyl;
  • Q 3 is selected from CR 13 and N;
  • Q 4 is selected from CR 13 , C(R 13 ) 2 , C(O), and N;
  • Q 10 is selected from CH and N;
  • W 17 is selected from a bond, C(R 14 ) 2 , C(O), and N
  • W* is C. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W* is N. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W 1 and W 6 are each independently selected from CH, CH 2 , C(O), and N. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W 1 is C(O). In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W 1 is N. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W 6 is CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W 6 is CH 2 . In embodiments of Formula I or a pharmaceutically acceptable salt thereof, A is C(O)N(R a ).
  • A is N(R a )C(O).
  • ring B is selected from phenyl, pyridinyl, and piperazinyl.
  • ring B is phenyl.
  • ring B is pyridinyl.
  • ring B is piperazinyl.
  • R 1 is OC 1-6 alkyl or 4–7 heterocycloalkyl and R 3 is C 1-6 alkyl or 3–6 membered heterocycloalkyl.
  • R 4 is H.
  • R 5 is H.
  • R 5 is halo.
  • R 5 is OC 1-6 alkyl.
  • R 6 is H.
  • R 7 is H.
  • R 12 is H.
  • Q 1 is C(O) or CH 2 .
  • Q 2 is N or CH.
  • Q 3 is N or CH.
  • Q 4 is N or CH.
  • Q 5 is N or CH.
  • Q 6 is N or CH.
  • Q 7 is N or CH.
  • Q 8 is N or CH.
  • Q 9 is N or CH.
  • Q 10 is N or CH.
  • W 16 is CH 2 , NH, or N(CH 3 ).
  • W 17 is a bond.
  • W 17 is C(O).
  • R 16 is H.
  • R 16 is halo.
  • p1 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p1 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p2 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p2 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p3 is 0. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p3 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p3 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p4 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p5 is 1.
  • p5 is 2.
  • p6 is 1.
  • p6 is 2.
  • p7 is 1.
  • R a is H.
  • R a is C 1-6 alkyl.
  • LNK is selected from: or a pharmaceutically acceptable salt thereof.
  • the compound is selected from:
  • compositions comprising any one of the compounds described herein, or a pharmaceutically acceptable salt thereof, with one or more pharmaceutically acceptable excipients.
  • the pharmaceutical composition further comprises an additional bioactive agent, wherein the bioactive agent is an anti-cancer agent, an anti-inflammatory agent, an anti-neurodegenerative agent, or an anti-immunological agent.
  • the bioactive agent is an anti-cancer agent, an anti-inflammatory agent, an anti-neurodegenerative agent, or an anti-immunological agent.
  • the compounds disclosed herein may exist as tautomers and optical isomers (e.g., enantiomers, diastereomers, diastereomeric mixtures, racemic mixtures, and the like). The absolute stereochemistry is specified according to the Cahn-Ingold-Prelog R-S system.
  • a compound designated as (R*) refers to a compound that is a pure single isomer at that stereocenter with an absolute configuration of either (R) or (S)
  • a compound designated as (S*) refers to a compound that is a pure single isomer at that stereocenter with an absolute configuration of either (R) or (S).
  • Compounds provided herein can also include all isotopes of atoms occurring in the intermediates or final compounds. Isotopes include those atoms having the same atomic number but different mass numbers.
  • isotopes of hydrogen include tritium and deuterium.
  • One or more constituent atoms of the compounds of the invention can be replaced or substituted with isotopes of the atoms in natural or non-natural abundance.
  • the compound includes at least one deuterium atom.
  • one or more hydrogen atoms in a compound of the present disclosure can be replaced or substituted by deuterium.
  • the compound includes two or more deuterium atoms.
  • the compound includes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 deuterium atoms. Synthetic methods for including isotopes into organic compounds are known in the art (Deuterium Labeling in Organic Chemistry by Alan F.
  • Isotopically labeled compounds can used in various studies such as NMR spectroscopy, metabolism experiments, and/or assays.
  • any atom not specifically designated as a particular isotope is meant to represent any stable isotope of that atom.
  • H hydrogen
  • D deuterium
  • deuterium the position is understood to have deuterium at an abundance that is at least 3000 times greater than the natural abundance of deuterium, which is 0.015% (i.e., at least 45% incorporation of deuterium).
  • the compounds provided herein have an isotopic enrichment factor for each designated deuterium atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least 5000 (75% deuterium), at least 5500 (82.5% deuterium incorporation), at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation), at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation), or at least 6633.3 (99.5% deuterium incorporation).
  • This application pertains to methods of treating or ameliorating a disease state or condition that is modulated through or causally related to the target protein, i.e., IRAK-4.
  • Provided herein are methods of treating a disease or disorder comprising administering to a subject an effective amount of a compound disclosed herein, or a therapeutically effective amount of a pharmaceutical composition disclosed herein.
  • the disease or disorder is a neurodegenerative disease or disorder, an inflammatory disease or disorder, an immunological disease or disorder, and/or a cancer associated with signaling through signaling pathways regulated by IRAK-4, and/or the myddosome complex.
  • the neurodegenerative and/or neuroinflammatory disease or disorder is stroke, traumatic brain injury, optic neuritis, Alzheimer’s disease, Parkinson’s disease, amyotrophic lateral sclerosis, Huntington's disease, cerebral ischemia, and neurodegenerative disease caused by traumatic injury, glutamate neurotoxicity, hypoxia, epilepsy, or graft versus host disease.
  • the inflammatory disease or disorder is ocular allergy, conjunctivitis, keratoconjunctivitis sicca, vernal conjunctivitis, allergic rhinitis, autoimmune hematological disorders (e.g., hemolytic anemia, aplastic anemia, pure red cell anemia and idiopathic thrombocytopenia), systemic lupus erythematosus, rheumatoid arthritis, polychondritis, scleroderma, Wegener granulamatosis, dermatomyositis, chronic active hepatitis, myasthenia gravis, Stevens-Johnson syndrome, idiopathic sprue, autoimmune inflammatory bowel disease (e.g., ulcerative colitis and Crohn’s disease), irritable bowel syndrome, celiac disease, periodontitis, hyaline membrane disease, kidney disease, glomerular disease, alcoholic liver disease, multiple sclerosis, inflammation associated
  • the immunological disease or disorder is multiple sclerosis, rheumatoid arthritis, spondyloarthropathy, systemic lupus erythematosus, antibody-mediated inflammatory or autoimmune disease, graft-versus-host disease, sepsis, diabetes, psoriasis, atheroma, atherosclerosis, Sjogren’s syndrome, progressive systemic sclerosis, scleroderma, acute coronary syndrome, ischemia reperfusion, Crohn’s disease, endometriosis, glomerulonephritis, myasthenia gravis, idiopathic pulmonary fibrosis.
  • the cancer is squamous-cell carcinoma, basal cell carcinoma, adenocarcinoma, hepatocellular carcinomas, and renal cell carcinomas, cancer of the bladder, bowel, breast, cervix, colon, esophagus, head, kidney, liver, lung, neck, ovary, pancreas, prostate, and stomach; leukemias; benign and malignant lymphomas, particularly Burkitt’s lymphoma and Non-Hodgkin’s lymphoma; benign and malignant melanomas; myeloproliferative diseases; sarcomas, including Ewing’s sarcoma, hemangiosarcoma, Kaposi’s sarcoma, liposarcoma, myosarcomas, peripheral neuroepithelioma, synovial sarcoma, gliomas, astrocytomas, oligodendrogliomas, ependymomas, gliobastomas, neuroblast
  • Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups, and elixirs.
  • the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, dimethylformamide, oils (in particular, cottonseed, groundnut, com, germ, olive, castor, and sesame oils), glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
  • inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents
  • the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, and perfuming agents.
  • adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, and perfuming agents.
  • injectable preparations for example, sterile injectable aqueous or oleaginous suspensions
  • the sterile injectable preparation may also be a sterile injectable solution, suspension, or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3-butanediol.
  • Suitable vehicles and solvents that may be employed are water, Ringer’s solution, U.S.P., and isotonic sodium chloride solution.
  • sterile, fixed oils are conventionally employed as a solvent or suspending medium.
  • any bland fixed oil can be employed including synthetic mono- or diglycerides.
  • fatty acids such as oleic acid are used in the preparation of injectables.
  • compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this disclosure with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol, or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
  • suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol, or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
  • compositions of a similar type may also be employed as fillers in soft and hard filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like.
  • the active compounds can also be in micro-encapsulated form with one or more excipients as noted above.
  • the solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings, and other coatings well known in the pharmaceutical formulating art.
  • the active compound may be admixed with at least one inert diluent such as sucrose, lactose, or starch.
  • Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose.
  • the dosage forms may also comprise buffering agents.
  • Dosage forms for topical or transdermal administration of a compound of this disclosure include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants, or patches.
  • the active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required.
  • Ophthalmic formulation, ear drops, eye ointments, powders and solutions are also contemplated as being within the scope of this disclosure.
  • the ointments, pastes, creams, and gels may contain, in addition to an active compound of this disclosure, excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • Powders and sprays can contain, in addition to the compounds of this disclosure, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances.
  • Sprays can additionally contain customary propellants such as chlorofluorohydrocarbons.
  • Transdermal patches have the added advantage of providing controlled delivery of a compound to the body.
  • dosage forms can be made by dissolving or dispensing the compound in the proper medium.
  • Absorption enhancers can also be used to increase the flux of the compound across the skin.
  • the rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel.
  • Compounds of the present disclosure can be administered intratympanically, wherein a long, narrow, bore needle is passed through the ear canal and through the eardrum to administer medications into the middle ear space where they are absorbed by the inner ear.
  • disorders are treated or prevented in a subject, such as a human or other animal, by administering to the subject a therapeutically effective amount of a compound of the disclosure, in such amounts and for such time as is necessary to achieve the desired result.
  • a therapeutically effective amount of a compound of the disclosure means a sufficient amount of the compound so as to decrease the symptoms of a disorder in a subject.
  • an effective amount of a compound of this disclosure will be at a reasonable benefit/risk ratio applicable to any medical treatment.
  • compounds of the disclosure will be administered in effective amounts via any of the usual and acceptable modes known in the art, either singly or in combination with one or more therapeutic agents.
  • an effective amount can vary widely depending on the severity of the disease, the age and relative health of the subject, the potency of the compound used and other factors. In general, satisfactory results are indicated to be obtained systemically at daily dosages of from about 0.03 to 2.5 mg/kg per body weight.
  • An indicated daily dosage in the larger mammal, e.g., humans, is in the range from about 0.5 mg to about 100 mg, conveniently administered, e.g., in divided doses up to four times a day or in retard form.
  • Suitable unit dosage forms for oral administration comprise from ca.1 to 50 mg active ingredient.
  • an effectiveamount or dose of the compounds of the present disclosure may range from about 0.1 mg/Kg to about 500 mg/Kg, alternatively from about 1 to about 50 mg/Kg.
  • treatment regimens comprise administration to a patient in need of such treatment from about 10 mg to about 1000 mg of the compound(s) of this disclosure per day in single or multiple doses.
  • Therapeutic amounts or doses will also vary depending on route of administration, as well as the possibility of co-usage with other agents.
  • a maintenance dose of a compound, composition or combination of this disclosure may be administered, if necessary.
  • the dosage or frequency of administration, or both may be reduced, as a function of the symptoms, to a level at which the improved condition is retained; when the symptoms have been alleviated to the desired level, treatment should cease.
  • the subject may, however, require intermittent treatment on a long-term basis upon any recurrence of disease symptoms.
  • the total daily usage of the compounds and compositions of the present disclosure will be decided by the attending physician within the scope of sound medical judgment.
  • the specific inhibitory dose for any particular patient will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific composition employed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed; and like factors well known in the medical arts.
  • the disclosure also provides for a pharmaceutical combination, e.g., a kit, comprising a) a first agent which is a compound of the disclosure as disclosed herein, in free form or in pharmaceutically acceptable salt form, and b) at least one co-agent.
  • a pharmaceutical combination e.g., a kit, comprising a) a first agent which is a compound of the disclosure as disclosed herein, in free form or in pharmaceutically acceptable salt form, and b) at least one co-agent.
  • the kit can comprise instructions for its administration.
  • materials which can serve as pharmaceutically acceptable carriers include, but are not limited to, ion exchangers; alumina; aluminum stearate; lecithin; serum proteins, such as human serum albumin; buffer substances such as phosphates, glycine, sorbic acid, or potassium sorbate; partial glyceride mixtures of saturated vegetable fatty acids; water; salts or electrolytes, such as protamine sulfate; disodium hydrogen phosphate; potassium hydrogen phosphate; sodium chloride; zinc salts; colloidal silica; magnesium trisilicate; polyvinyl pyrrolidone; polyacrylates; waxes; polyethylenepolyoxypropylene-block polymers; wool fat; sugars such as lactose, glucose and sucrose; starches such as corn starch and potato starch; cellulose and its derivatives such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc;
  • non-toxic compatible lubricants such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, releasing agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the composition, according to the judgment of the formulator.
  • the protein kinase inhibitors or pharmaceutical salts thereof may be formulated into pharmaceutical compositions for administration to animals or humans. These pharmaceutical compositions, which comprise an amount of the protein inhibitor effective to treat or prevent a protein kinase-mediated condition and a pharmaceutically acceptable carrier, are other embodiments of the present disclosure.
  • kits comprising a compound capable of degrading IRAK-4 protein kinase selected from one or more compounds of disclosed herein, or pharmaceutically acceptable salts thereof, and instructions for use in treating a disorder associated with IRAK-4 protein kinases.
  • the disclosure provides a kit comprising a compound capable of degrading IRAK-4 protein kinase selected from a compound disclosed herein, or a pharmaceutically acceptable salt thereof.
  • kits comprising a compound disclosed herein, or a pharmaceutically acceptable salt thereof for the treatment of any of the indications disclosed herein.
  • reaction conditions including but not limited to reaction times, reaction size/volume, and experimental reagents, such as solvents, catalysts, pressures, atmospheric conditions, e.g., nitrogen atmosphere, and reducing/oxidizing agents, with art-recognized alternatives and using no more than routine experimentation, are within the scope of the present application.
  • a compound of formula INT-I, wherein R is an ether, may be reacted with a reagent INT-II (commercially available or readily prepared using standard reaction techniques known to one skilled in the art) under reductive amination or alkylation conditions to produce a compound of formula INT-III, wherein L is as defined herein.
  • Compounds of formula INT-III can be furnished from N-alkylation where Y is an appropriate leaving group (e.g. OMs, OTs, Cl, etc.) or through reductive amination where Y is an aldehyde or ketone.
  • suitable reaction conditions are those for an alkylation reaction, e.g.
  • reaction conditions are those for a reductive amination reaction, e.g. sodium cyanoborohydride, methanol, dichloromethane, acetic acid, room temperature.
  • Step 3 tert-butyl 4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3-carbonylamino)imidazo[1,2- a]pyridin-2-yl]piperidine-1-carboxylate
  • tert-butyl 4-(6-bromo-7-isopropoxy-imidazo[1,2-a]pyridin-2- yl)piperidine-1-carboxylate 1 g, 2.28 mmol, 1 eq
  • pyrazolo[1,5-a]pyrimidine-3- carboxamide 370 mg, 2.28 mmol, 1 eq
  • Step 4 N-[7-isopropoxy-2-(4-piperidyl)imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • tert-butyl 4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)imidazo[1,2-a]pyridin-2-yl]piperidine-1-carboxylate 1.2 g, 2.31 mmol, 1 eq
  • dichloromethane 10 mL
  • hydrogen chloride in methanol (4 M, 120 mL
  • the reaction mixture was stirred at 100 °C for 12 h.
  • the reaction mixture was quenched by the addition of water (10 mL), and then diluted with water (20 mL) and extracted with ethyl acetate (40 mL x 3). The combined organic layers were washed with brine (60 mL x 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue.
  • Step 2 N-[2-[1-[(3-fluoroazetidin-3-yl)methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2- a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • tert-butyl 3-fluoro-3-[[4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)imidazo[1,2-a]pyridin-2-yl]-1-piperidyl]methyl]azetidine-1-carboxylate 500 mg, 0.82 mmol, 1 eq
  • dichloromethane 2 mL
  • trifluoroacetic acid 3.08 g, 27.01 mmol, 2.00 mL
  • reaction mixture was stirred at 25 °C for 0.5 h and then concentrated under reduced pressure to give a residue which was diluted with a 10:1 solution of dichloromethane:methanol (20 mL). Ammonium hydroxide was added to adjust the pH of the solution between 8 and 9 before concentrating under reduced pressure.
  • Step 3 N-[2-[1-[[1-[2-(2,6-dioxo-3-piperidyl)-1,3-dioxo-isoindolin-5-yl]-3-fluoro-azetidin-3- yl]methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • N-[2-[1-[(3-fluoroazetidin-3-yl)methyl]-4-piperidyl]-7-isopropoxy- imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide 90 mg, 0.18 mmol, 1 eq
  • DMSO 3 mL
  • N,N-diisopropylethylamine 115 mg, 0.89 mmol, 5 eq
  • the reaction mixture was stirred at 80 °C for 12 h.
  • the reaction mixture was quenched by addition of water (10 mL), and then diluted with water (30 mL) and extracted with dichloromethane (30 mL x 3).
  • the combined organic layers were washed with brine (60 mL x 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue.
  • Example 9 N-[2-[1-[[1-[2-(2,6-dioxo-3-piperidyl)-1,3-dioxo-isoindolin-5-yl]-3-fluoro-azetidin- 3-yl]methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • Step 1 tert-butyl 4-(2-(5-bromo-2-imino-4-isopropoxypyridin-1(2H)-yl)acetyl)piperazine-1- carboxylate A solution of 5-bromo-4-isopropoxypyridin-2-amine (2.6 g, 11.25 mmol, 1 eq), tert- butyl 4-(2-bromoacetyl
  • Step 2 1-(4-(6-bromo-7-isopropoxyimidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)-2,2,2- trifluoroethanone
  • tert-butyl 4-(2-(5-bromo-2-imino-4-isopropoxypyridin-1(2H)- yl)acetyl)piperazine-1-carboxylate (4 g, 8.75 mmol, 1 eq) in 1,2-dichloroethane (160 mL) was added trifluoroacetic anhydride (18.12 g, 86.27 mmol, 12.00 mL, 9.86 eq) and the mixture was stirred at 100 °C for 3 h.
  • the reaction mixture was poured into 100 mL of ice water and the pH was adjusted to 8 and further diluted with 1,2-dichloroethane (200 mL). The organic phase was separated, washed with brine (45 mL ⁇ 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was stirred with methanol (50 mL) at 25 °C for 0.5 h and concentrated under reduced pressure to give a residue.
  • Step 3 N-(7-isopropoxy-2-(4-(2,2,2-trifluoroacetyl)piperazin-1-yl)imidazo[1,2-a]pyridin-6- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • 1-(4-(6-bromo-7-isopropoxyimidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)- 2,2,2-trifluoroethanone (3 g, 6.89 mmol, 1 eq) and pyrazolo[1,5-a]pyrimidine-3-carboxamide (2.25 g, 13.88 mmol, 2.01 eq) in dioxane (105 mL) was added potassium carbonate (2 g, 14.47 mmol, 2.10 eq) and BrettPhos Pd G4 (650 mg, 706.12 mmol, 1.02e-1 eq).
  • reaction mixture was stirred at 90 °C for 12 h under an atmosphere of nitrogen and then quenched by the addition of water (100 mL) at 25 °C.
  • the mixture was then extracted with ethyl acetate (200 mL ⁇ 3).
  • the combined organic layers were washed with brine (200 mL), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue.
  • Step 4 N-(7-isopropoxy-2-(piperazin-1-yl)imidazo[1,2-a]pyridin-6-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • N-(7-isopropoxy-2-(4-(2,2,2-trifluoroacetyl)piperazin-1-yl)imidazo[1,2- a]pyridin-6-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 400 mg, 774.48 ⁇ mol, 1 eq) in methanol (16 mL), water (4 mL) was added potassium carbonate (600.0 mg, 4.34 mmol, 5.61 eq) and stirred at 25 °C for 12 h.
  • Step 5 tert-butyl 5-bromo-2-fluorobenzoate A solution of N,N'-methanediylidenedicyclohexanamine (8.3 g, 40.23 mmol, 8.14 mL, 1.1 eq) in tetrahydrofuran (80 mL) was added dropwise to a stirred solution of 5-bromo-2- fluorobenzoic acid (8 g, 36.53 mmol, 1 eq) and dimethylaminopyridine (4.5 g, 36.83 mmol, 1.01 eq) in tert-butanol (200 mL). The mixture was stirred at 25 °C for 12 h. The reaction mixture was filtered and concentrated under reduced pressure.
  • Step 6 (3-fluoroazetidin-3-yl)methanol
  • tert-butyl 3-fluoro-3-(hydroxymethyl)azetidine-1-carboxylate 5.0 g, 24.36 mmol, 1 eq
  • dichloromethane 50 mL
  • trifluoroacetic acid 38.50 g, 337.65 mmol, 25 mL, 13.86 eq
  • the mixture was stirred at 25 °C for 1 h.
  • Step 7 tert-butyl 2-fluoro-5-(3-fluoro-3-(hydroxymethyl)azetidin-1-yl)benzoate
  • Cesium carbonate 35.21 g, 108.06 mmol, 5 eq
  • (3-fluoroazetidin-3-yl)methanol 7.2 g, 21.61 mmol, 1 eq, 2 trifluoroacetic acid
  • tert-butyl 5-bromo-2-fluorobenzoate (5.95 g, 21.61 mmol, 1 eq)
  • (2-dicyclohexylphosphino-2,6-dimethoxybiphenyl)[2-(2-amino-1,1- biphenyl)]palladium(ii)methanesulfonate (1.80 g, 2.31 mmol, 1.07e-1 eq) in 2-methylbutan-2- ol (200 mL) was de-gassed and then heated to 90
  • Step 8 tert-butyl 2-fluoro-5-(3-fluoro-3-formylazetidin-1-yl)benzoate
  • Dimethyl sulfoxide (2.00 g, 25.60 mmol, 2.00 mL, 3.83 eq) was slowly added to a solution of oxalyl chloride (2.90 g, 22.85 mmol, 2.00 mL, 3.42 eq) in distilled methylene chloride (30 mL) at -78 °C, and the mixture was stirred at -78 °C for 0.5 h.
  • tert-butyl 2- fluoro-5-(3-fluoro-3-(hydroxymethyl)azetidin-1-yl)benzoate (2 g, 6.68 mmol, 1 eq) was added and the mixture was stirred at -78 °C for 1 h.
  • Triethylamine (7.27 g, 71.85 mmol, 10.00 mL, 10.75 eq) was slowly added at -78 °C, and the mixture was stirred for 1 h.
  • the reaction mixture was washed with brine (50 mL), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue.
  • Step 9 tert-butyl 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1-yl)benzoate
  • tert-butyl 2-fluoro-5-(3-fluoro-3-formylazetidin-1-yl)benzoate 500 mg, 1.68 mmol, 4.42 eq
  • N-(7-isopropoxy-2-(piperazin-1-yl)imidazo[1,2-a]pyridin-6- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 160 mg, 380.53 ⁇ mol, 1 eq) in dimethylsulfoxide (5 mL) and 1,2-dichloroethane (5 mL) was
  • Step 10 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1-yl)benzoic acid
  • 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1- yl)benzoate 330 mg, 470.24 ⁇ mol, 1 eq) in dichloromethane (2 mL) was added trifluoroacetic acid (3.08 g, 27.01 mmol, 2 mL, 57.44 e
  • Step 11 N-(2-(4-((1-(3-((2,6-dioxopiperidin-3-yl)carbamoyl)-4-fluorophenyl)-3-fluoroazetidin- 3-yl)methyl)piperazin-1-yl)-7-isopropoxyimidazo[1,2-a]pyridin-6-yl)pyrazolo[1,5-a]pyrimidine- 3-carboxamide
  • 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine- 3-carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1-yl)benzoic acid (340 mg, 447.56 ⁇ mol, 1 eq, trifluoroacetic acid) and 3-aminopiperidine-2,6-dione (288.97 mg, 1.76
  • a compound of formula INT-VI can be readily prepared using standard reaction conditions to one skilled in the art as exemplified by the sequence described in Scheme B.
  • a compound of formula INT-VI may be reacted with a reagent INT-VII, wherein G is C(O), N, or CH 2 and Z is N or CH, to afford compounds of formula CMPD-VIII through N-alkylation where Y is an appropriate leaving group (e.g. OMs, OTs, Cl, etc.) or through reductive amination where Y is an aldehyde or ketone.
  • suitable reaction conditions are those for an alkylation reaction, e.g.
  • Step 2 2',6'-bis(benzyloxy)-5-(4-(dimethoxymethyl)piperidin-1-yl)-2,3'-bipyridine
  • 2-chloro-5-(4-(dimethoxymethyl)piperidin-1-yl)pyridine 300 mg, 1.1 mmol
  • 2,6-dibenzyloxy-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine 554 mg, 1.3 mmol
  • potassium phosphate 1.5 M, 1.48 mL
  • Mesylate[(di(1-adamantyl)-n- butylphosphine)-2-(2′-amino-1,1′-biphenyl)]palladium(II) 80 mg, 110 ⁇ mol) in N,N- dimethylacetamide (15 mL) was degassed and purged with nitrogen 3 times, then the mixture was stirred at 60 °C for 2 h under
  • Step 3 3-(5-(4-(dimethoxymethyl)piperidin-1-yl)pyridin-2-yl)piperidine-2,6-dione
  • ethyl acetate 10 mL
  • 10% palladium/carbon 200 mg, 606 ⁇ mol
  • the suspension was degassed under vacuum and purged with hydrogen several times. The mixture was stirred under hydrogen (15 psi) at 25°C for 12 h.
  • Step 4 1-(6-(2,6-dioxopiperidin-3-yl)pyridin-3-yl)piperidine-4-carbaldehyde
  • 3-(5-(4-(dimethoxymethyl)piperidin-1-yl)pyridin-2-yl)piperidine-2,6- dione (90 mg, 259 ⁇ mol) in dichloromethane (5 mL) was added trifluoroacetic acid (8.66 g, 75 mmol, 5.63 mL).
  • Step 1 methyl 5-hydroxy-2-methylbenzoate 5-hydroxy-2-methylbenzoic acid (5.0 g, 32.9 mmol, 1 eq) and hydrogen chloride/methanol (4 M, 40 mL, 4.87 eq) were stirred at 40 °C for 12 h. The reaction mixture was then concentrated under reduced pressure to afford methyl 5-hydroxy-2- methylbenzoate (5.0 g, 30.1 mmol, 92% yield) as a yellow solid which was used in the next step without further purification. MS (ESI) m/z: 167.2 [M+H] + .
  • Step 2 methyl 5-hydroxy-2-methyl-4-nitrobenzoate
  • methyl 5-hydroxy-2-methylbenzoate 8.0 g, 48.1 mmol, 1 eq
  • HOAc acetic anhydride
  • copper (II) nitrate, trihydrate 17.60 g, 72.85 mmol, 1.51 eq
  • the reaction mixture was allowed to stir at 0 °C for 1.5 h.
  • the reaction mixture was poured into ice water (1000 mL) and extracted with ethyl acetate (400 mL ⁇ 3).
  • Step 3 methyl 5-acetoxy-2-methyl-4-nitrobenzoate
  • dichloromethane 15 mL
  • triethylamine 4.79 g, 47.3 mmol, 6.59 mL, 4 eq
  • acetic anhydride 3.02 g, 29.6 mmol, 2.77 mL, 2.5 eq.
  • the reaction mixture was stirred at 25 °C for 12 h.
  • the reaction mixture was poured into water (200 mL) and extracted with ethyl acetate (100 mL ⁇ 3).
  • Step 4 methyl 5-acetoxy-2-(bromomethyl)-4-nitrobenzoate
  • NBS carbon tetrachloride
  • benzoyl peroxide 344.4 mg, 1.42 mmol, 0.15 eq
  • Step 5 tert-butyl 4-(6-hydroxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1-carboxylate
  • a solution of tert-butyl 4-aminopiperidine-1-carboxylate (7.48 g, 37.3 mmol, 4 eq) in tetrahydrofuran (20 mL) was added diisopropylethylamine (2.41 g, 18.7 mmol, 3.25 mL, 2 eq), followed by the slow addition of a solution of methyl 5-acetoxy-2-(bromomethyl)-4- nitrobenzoate (3.1 g, 9.3 mmol, 1 eq) in tetrahydrofuran (10 mL) over a period of 30 min at 40 °C.
  • Step 6 tert-butyl 4-(6-isopropoxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1-carboxylate
  • tert-butyl 4-(6-hydroxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1- carboxylate 900 mg, 2.38 mmol, 1 eq
  • 2-bromopropane 15.0 g, 121.96 mmol, 11.45 mL, 51.14 eq
  • acetonitrile 40 mL
  • Step 7 tert-butyl 4-(5-amino-6-isopropoxy-1-oxoisoindolin-2-yl)piperidine-1-carboxylate
  • tert-butyl 4-(6-isopropoxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1- carboxylate 700 mg, 1.67 mmol, 1 eq
  • 2,2,2-trifluoroethanol 15 mL
  • palladium on carbon 100 mg, 93.97 mmol, 10% purity, 0.0563 eq
  • Step 8 tert-butyl 4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidine-1-carboxylate
  • tert-butyl 4-(5-amino-6-isopropoxy-1-oxoisoindolin-2-yl)piperidine-1- carboxylate 300 mg, 770.2 mmol, 1 eq
  • pyrazolo[1,5-a]pyrimidine-3-carboxylic acid 200 mg, 1.23 mmol, 1.59 eq
  • Step 9 N-(6-isopropoxy-1-oxo-2-(piperidin-4-yl)isoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • a solution of tert-butyl 4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidine-1-carboxylate 410 mg, 766.9 mmol, 1 eq
  • methanol 4 mL
  • hydrogen chloride in methanol (4 M, 8.0 mL, 41.7 eq
  • the mixture was stirred at 25 °C for 12 h.
  • the reaction mixture was concentrated under reduced pressure, and the remaining residue was dissolved in 50 mL of methanol.
  • the pH of the solution was then adjusted to 7-8 with the addition of a saturated aqueous solution of sodium bicarbonate solution.
  • Step 2 2-(methoxycarbonyl)-3-methyl-5-nitropyridine 1-oxide
  • m-chloroperbenzoic acid 11.18 g, 55.06 mmol, 85% purity, 1.5 eq
  • the reaction mixture was quenched with water (60 mL), the pH was adjusted to 8 with a saturated aqueous solution of sodium bicarbonate at 0 °C, and extracted with dichloromethane (80 mL ⁇ 4).
  • Step 3 methyl 6-hydroxy-3-methyl-5-nitropicolinate
  • 2-(methoxycarbonyl)-3-methyl-5-nitropyridine 1-oxide (4 g, 18.85 mmol, 1 eq) in N,N-dimethylformamide (40 mL) was added trifluoroacetic anhydride (31.68 g, 150.83 mmol, 20.98 mL, 8 eq) at 0 °C and stirred at 50 °C for 12 h.
  • Step 6 tert-butyl 4-(2-isopropoxy-3-nitro-7-oxo-5H-pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine- 1-carboxylate
  • tert-butyl 4-aminopiperidine-1-carboxylate (1.44 g, 7.20 mmol, 3 eq) and N,N-diisopropylethylamine (1.55 g, 12.01 mmol, 2.09 mL, 5 eq) in THF (10 mL) was added dropwise a solution of methyl 3-(bromomethyl)-6-isopropoxy-5-nitropicolinate (0.8 g, 2.40 mmol, 1 eq) in tetrahydrofuran (5 mL) at 40 °C.
  • Step 7 tert-butyl 4-(3-amino-2-isopropoxy-7-oxo-5H-pyrrolo[3,4-b]pyridin-6(7H)- yl)piperidine-1-carboxylate
  • tert-butyl 4-(2-isopropoxy-3-nitro-7-oxo-5H-pyrrolo[3,4-b]pyridin- 6(7H)-yl)piperidine-1-carboxylate 0.5 g, 1.19 mmol, 1 eq
  • trifluoroethanol (10 mL) was added palladium on carbon (10%, 500 mg) under a nitrogen atmosphere.
  • the suspension was degassed and purged with hydrogen 3 times.
  • Step 8 tert-butyl 4-(2-isopropoxy-7-oxo-3-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)-5H- pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine-1-carboxylate
  • tert-butyl 4-(3-amino-2-isopropoxy-7-oxo-5H-pyrrolo[3,4-b]pyridin- 6(7H)-yl)piperidine-1-carboxylate 370 mg, 947.56 ⁇ mol, 1 eq
  • pyrazolo[1,5- a]pyrimidine-3-carboxylic acid (463.74 mg, 2.84 mmol, 3 eq) in pyridine (10 mL) was added 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (908.25 mg, 4.74 mmol, 5 e
  • Step 9 N-(2-isopropoxy-7-oxo-6-(piperidin-4-yl)-6,7-dihydro-5H-pyrrolo[3,4-b]pyridin-3- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • a solution of tert-butyl 4-(2-isopropoxy-7-oxo-3-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-5H-pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine-1-carboxylate (0.25 g, 466.77 ⁇ mol, 1 eq) in DCM (3 mL) was added a solution of hydrochloric acid in methanol (4 M, 10 mL).
  • Step 1 2-fluoro-4-hydroxy-5-nitrobenzaldehyde
  • 2-fluoro-4-hydroxybenzaldehyde 10.0 g, 71.4 mmol, 1 eq
  • sulfuric acid 60 mL
  • a mixture of nitric acid 6 mL
  • sulfuric acid 14 mL
  • the mixture was stirred at -15 °C for 1 h then it was poured into water (500 mL) at 0 °C and extracted with ethyl acetate (200 mL ⁇ 3).
  • Step 2 4-(cyclopropylmethoxy)-2-fluoro-5-nitrobenzaldehyde To a solution of 2-fluoro-4-hydroxy-5-nitrobenzaldehyde (15.0 g, 81.03 mmol, 1 eq) in N,N-dimethylformamide (100 mL) was added potassium carbonate (34 g, 246.0 mmol, 3.04 eq) and (bromomethyl)cyclopropane (15 g, 111.1 mmol, 10.64 mL, 1.37 eq). The mixture was stirred at 60 °C for 12 h.
  • Step 3 2-azido-4-(cyclopropylmethoxy)-5-nitrobenzaldehyde
  • 4-(cyclopropylmethoxy)-2-fluoro-5-nitrobenzaldehyde 6.5 g, 27.2 mmol, 1 eq
  • sodium azide 3.6 g, 55.4 mmol, 2.04 eq
  • the reaction mixture was stirred at 25 °C for 12 h.
  • the reaction mixture was poured into water (50 mL) at 0 °C, and then extracted with ethyl acetate (30 mL ⁇ 3).
  • Step 4 tert-butyl 4-(6-(cyclopropylmethoxy)-5-nitro-2H-indazol-2-yl)piperidine-1-carboxylate
  • 2-azido-4-(cyclopropylmethoxy)-5-nitrobenzaldehyde 7.0 g, 26.7 mmol, 1 eq
  • tert-butyl 4-aminopiperidine-1-carboxylate 5.5 g, 27.5 mmol, 1.03 eq.
  • the mixture was stirred at 120 °C for 12 h.
  • the reaction mixture was concentrated under reduced pressure.
  • Step 5 tert-butyl 4-(5-amino-6-(cyclopropylmethoxy)-2H-indazol-2-yl)piperidine-1- carboxylate
  • a solution of tert-butyl 4-(6-(cyclopropylmethoxy)-5-nitro-2H-indazol-2- yl)piperidine-1-carboxylate (10.5 g, 25.2 mmol, 1 eq) in methanol (150 mL) was added palladium on carbon (11.00 g, 10.34 mmol, 10% purity, 0.41 eq) under nitrogen atmosphere.
  • the suspension was degassed under vacuum and purged with hydrogen several times.
  • Step 7 N-(6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)piperidine-1-carboxylate 300 mg, 564.33 mmol, 1 eq
  • dioxane 2 mL
  • Step 1 4-(azetidin-1-yl)-1-benzylpiperidine
  • azetidine hydrochloride (10 g, 106.89 mmol, 1 eq) and acetic acid (5.25 g, 87.42 mmol, 5.00 mL, 8.18e-1 eq) in methanol (50 mL) and DCM (50 mL)
  • 1- benzylpiperidin-4-one (20.23 g, 106.89 mmol, 19.83 mL, 1 eq) was allowed to stir for 1 h.
  • Step 2 4-(azetidin-1-yl)piperidine
  • a solution of 4-(azetidin-1-yl)-1-benzylpiperidine (5.5 g, 23.88 mmol, 1 eq) in trifluoroethanol (100 mL) was added palladium on carbon (400 mg, 10% purity) and palladium hydroxide (550.0 mg, 391.64 ⁇ mol, 10% purity, 1.64e-2 eq).
  • the mixture was stirred under hydrogen (15 psi) at 25 °C for 12 h.
  • the reaction mixture was and concentrated under reduced pressure to afford 4-(azetidin-1-yl)piperidine (3.3 g, 23.53 mmol, 98% yield) as a colorless oil.
  • Step 3 tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-1-oxoisoindolin-2-yl)piperidine- 1-carboxylate
  • 4-(azetidin-1-yl)piperidine (779.35 mg, 5.56 mmol, 2 eq) in DMSO (1 mL) was added diisopropylethylamine (1.08 g, 8.34 mmol, 1.45 mL, 3 eq).
  • the mixture was stirred at 100 °C for 12 h.
  • the reaction mixture was quenched by addition water 10 mL at 0 °C, and then diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (10 mL ⁇ 3).
  • the combined organic layers were washed with brine (10 mL ⁇ 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue.
  • Step 4 tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxoisoindolin-2- yl)piperidine-1-carboxylate
  • tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-1-oxoisoindolin- 2-yl)piperidine-1-carboxylate 750 mg, 1.50 mmol, 1 eq
  • ammonium chloride (1.20 g, 22.52 mmol, 15 eq
  • zinc powder 1.47 g, 22.52 mmol, 15 eq
  • the mixture was stirred at 50 °C for 12 h.
  • the reaction mixture was filtered and concentrated under reduced pressure to give a residue.
  • the reaction mixture was quenched by addition of an aqueous solution of sodium bicarbonate (10 mL) at 0 °C, and then diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (10 mL ⁇ 3).
  • the combined organic layers were washed with brine (10 mL ⁇ 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue.
  • Step 5 tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidine-1-carboxylate
  • a solution of tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-1- oxoisoindolin-2-yl)piperidine-1-carboxylate 200 mg, 425.88 ⁇ mol, 1 eq
  • pyrazolo[1,5- a]pyrimidine-3-carboxylic acid 138.95 mg, 851.76 ⁇ mol, 2 eq
  • 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (326.57 mg,
  • the mixture was stirred at 50 °C for 0.5 h.
  • the reaction mixture was quenched by addition of water (10 mL) at 0 °C, and then diluted with dichloromethane (30 mL) and extracted with dichloromethane (10 mL ⁇ 3). The combined organic layers were washed with brine (10 mL ⁇ 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue.
  • Step 6 N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-2-(piperidin-4-yl)isoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)isoindolin-2-yl)piperidine-1-carboxylate (170 mg, 276.54 ⁇ mol, 1 eq) in dichloromethane (2 mL) was added trifluoroacetic acid (6.55 g, 57.40 mmol, 4.25 mL, 207.57 eq).
  • Step 2 tert-butyl 4-(6-hydroxy-5-nitro-2H-indazol-2-yl)piperidine-1-carboxylate
  • 2-azido-4-hydroxy-5-nitrobenzaldehyde 1.1 g, 5.29 mmol, 1 eq
  • tert-butyl 4-aminopiperidine-1-carboxylate 1.06 g, 5.29 mmol, 1 eq.
  • the reaction mixture was stirred at 120 °C for 12 h.
  • the reaction mixture was concentrated under reduced pressure.
  • the residue was diluted with water 100 mL and extracted with ethyl acetate (100 mL ⁇ 3).
  • Step 3 tert-butyl 4-(5-nitro-6-(((trifluoromethyl)sulfonyl)oxy)-2H-indazol-2-yl)piperidine-1- carboxylate
  • pyridine (1.31 g, 16.56 mmol, 1.34 mL, 6 eq)
  • trifluoromethanesulfonic anhydride (2.34 g, 8.28 mmol, 1.37 mL, 3 eq).
  • Step 5 tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-2H-indazol-2-yl)piperidine-1- carboxylate
  • tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-2H-indazol-2- yl)piperidine-1-carboxylate (1 g, 2.06 mmol, 1 eq) in trifluoroethanol (15 mL) was added palladium on carbon (10%, 0.5 g) under a nitrogen atmosphere. The suspension was degassed and purged with hydrogen 3 times.
  • Step 6 tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxa mido)-2H-indazol-2-yl)piperidine-1-carboxylate
  • pyrazolo[1,5-a]pyrimidine-3-carboxylic acid 322.96 mg, 1.98 mmol, 1 eq
  • pyridine-10 mL tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-2H- indazol-2-yl)piperidine-1-carboxylate (0.9 g, 1.98 mmol, 1 eq) and 1-(3- dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (1.14 g, 5.94 mmol, 3 eq
  • Step 7 N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-2-(piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5-a] pyrimidine-3-carboxamide
  • a solution of tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)-2H-indazol-2-yl)piperidine-1-carboxylate 0.2 g, 333.49 ⁇ mol, 1 eq
  • dichloromethane 6 mL
  • trifluoroacetic acid 9.24 g, 81.04 mmol, 6.00 mL, 243.0 eq).
  • Example 10 N-[2-[1-[[7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonan-2- yl]methyl]-4-piperidyl]-6-isopropoxy-1-oxo-isoindolin-5-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • Step 1 7-azaspiro[3.5]nonan-2-ylmethanol To a solution of tert-butyl 2-(hydroxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate (2.5 g, 9.8 mmol) in dichloromethane (10 mL) was added trifluoroacetic acid (2.23 g, 19.6 mmol, 1.45 mL).
  • reaction mixture was stirred at 25 °C for 0.5 h, then concentrated under reduced pressure to afford 7-azaspiro[3.5]nonan-2-ylmethanol trifluoroacetic acid (2.6 g, crude) as yellow oil, which was used in the next step without further purification.
  • Step 2 benzyl 2-(hydroxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate
  • tetrahydrofuran 25 mL
  • water 25 mL
  • p- toluenesulfonyl chloride 3.14 g, 18.4 mmol
  • Step 3 benzyl 2-formyl-7-azaspiro[3.5]nonane-7-carboxylate
  • dichloromethane 30 mL
  • Dess-Martin periodinane 7.62 g, 18.0 mmol, 5.56 mL
  • sodium bicarbonate 4.53 g, 53.9 mmol
  • Step 4 benzyl 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate
  • benzyl 2-formyl-7-azaspiro[3.5]nonane-7-carboxylate (1.77 g, 6.2 mmol) and p-toluene sulfonic acid (1.17 g, 6.2 mmol) in methanol (20 mL) was added trimethoxymethane (1.31 g, 12.3 mmol).
  • Step 5 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane
  • benzyl 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate 1.7 g, 5.1 mmol
  • trifluoroethanol 20 mL
  • 10% palladium on carbon 500 mg
  • the reaction mixture was stirred at 25 °C for 2 h with hydrogen (15 psi).
  • the reaction mixture was filtered and concentrated under reduced pressure to afford 2- (dimethoxymethyl)-7-azaspiro[3.5]nonane (1 g, crude) as a colorless oil.
  • Step 6 7-[4-(2,6-dibenzyloxy-3-pyridyl)-3-fluoro-phenyl]-2-(dimethoxymethyl)-7- azaspiro[3.5]nonane
  • 2,6-dibenzyloxy-3-(4-bromo-2-fluoro-phenyl)pyridine 500 mg, 1.1 mmol
  • 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane 322 mg, 1.6 mmol
  • dioxane (20 mL) was added tris(dibenzylideneacetone)dipalladium(0) (49 mg, 0.05 mmol), dicyclohexyl- [2-[2,6-di(propan-2-yloxy)phenyl]phenyl]phosphane (101 mg, 0.2 mmol) and sodium tert- butoxide (2 M, 1.6 mL).
  • the reaction mixture was stirred at 110 °C for 2 h.
  • the reaction was quenched by water (20 mL), diluted with water (30 mL) and extracted with ethyl acetate (3 x 30 mL).
  • the combined organic layers were washed with brine (3 x 40 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure.
  • Step 7 3-[4-[2-(dimethoxymethyl)-7-azaspiro[3.5]nonan-7-yl]-2-fluoro-phenyl]piperidine-2,6- dione
  • 7-[4-(2,6-dibenzyloxy-3-pyridyl)-3-fluoro-phenyl]-2- (dimethoxymethyl)-7-azaspiro[3.5]nonane 540 mg, 0.9 mmol
  • trifluoroethanol 10 mL
  • 10% palladium on carbon 200 mg
  • the reaction mixture was stirred at 25 °C with hydrogen (15 psi) for 1 h.
  • Step 8 7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonane-2-carbaldehyde
  • 3-[4-[2-(dimethoxymethyl)-7-azaspiro[3.5]nonan-7-yl]-2-fluoro- phenyl]piperidine-2,6-dione 200 mg, 0.5 mmol
  • dichloromethane 2 mL
  • trifluoroacetic acid 56 mg, 0.5 mmol
  • Step 9 N-[2-[1-[[7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonan-2- yl]methyl]-4-piperidyl]-6-isopropoxy-1-oxo-isoindolin-5-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • 7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonane-2- carbaldehyde 90 mg, 0.3 mmol
  • N-methylmorpholine 127 mg, 1.3 mmol
  • dichloromethane (2 mL) and dimethyl sulfoxide (2 mL) was added N-[6-isopropoxy-1-oxo-2- (4-piperidyl)isoindolin-5-yl]pyra
  • a compound of formula INT-IX where Y and n will be defined herein, can be readily prepared using standard reaction conditions to one skilled in the art as exemplified by the sequence described in Scheme G.
  • a compound of formula INT-IX may be reacted with a reagent of general formula INT-VII to afford compounds of formula CMPD-X through N- alkylation where Y is an appropriate leaving group (e.g. OMs, OTs, Cl, etc.) or through reductive amination where Y is an aldehyde or ketone.
  • reaction conditions are those for an alkylation reaction, e.g. diisopropylethylamine, potassium iodide, DMSO or acetonitrile, 80 °C.
  • suitable reaction conditions are those for a reductive amination reaction, e.g. sodium cyanoborohydride, methanol, dichloromethane, acetic acid, room temperature.
  • Scheme G Synthetic sequence for the preparation of 1-(6-(2,6-dioxopiperidin-3-yl)pyridin-3- yl)piperidine-4-carbaldehyde (INT-8), an example of generic intermediate INT-IX in Scheme 3.
  • Analogous synthetic intermediates can be prepared by commencing with alternative anilines in Step 1.
  • Step 1 3-((4-bromophenyl)amino)propanoic acid
  • 4-bromoaniline (10 g, 58.1 mmol) acrylic acid (4.19 g, 58.1 mmol, 3.99 mL) in acetic acid (20 mL) and water (100 mL) was stirred at 100 °C for 12 h under a nitrogen atmosphere.
  • the mixture was filtered and concentrated under reduced pressure and then diluted with water (100 mL) at 0 °C, and ethyl acetate (100 mL) and extracted with ethyl acetate (3 x 100 mL).
  • Step 2 1-(4-bromophenyl)dihydropyrimidine-2,4(1H,3H)-dione
  • 3-((4-bromophenyl)amino)propanoic acid 8 g, 32.8 mmol
  • acetic acid 80 mL
  • urea (19.68 g, 327.7 mmol, 17.57 mL)
  • the mixture was stirred at 100 °C for 12 h.
  • the reaction mixture was quenched with water (100 mL) at 0 °C, diluted with ethyl acetate (100 mL) and extracted with ethyl acetate (3 x 100 mL).
  • Step 3 1-(4-(4-(dimethoxymethyl)piperidin-1-yl)phenyl)dihydropyrimidine-2,4(1H,3H)-dione
  • 1-(4-bromophenyl)dihydropyrimidine-2,4(1H,3H)-dione 0.9 g, 3.3 mmol
  • 4-(dimethoxymethyl)piperidine 798.81 mg, 5.0 mmol) in dioxane (2 mL) was added [2-(2-aminophenyl)phenyl]palladium(1+);2-(2-dicyclohexylphosphanylphenyl)- N1,N1,N3,N3-tetramethyl-benzene-1,3-diamine;methanesulfonate (269.69 mg, 334.5 mmol).
  • Step 4 1-(4-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)phenyl)piperidine-4-carbaldehyde
  • 1-(4-(4-(dimethoxymethyl)piperidin-1-yl)phenyl)dihydropyrimidine- 2,4(1H,3H)-dione (0.07 g, 201.5 mmol) in dichloromethane (2 mL) was added trifluoroacetic acid (3.08 g, 27.0 mmol, 2 mL). The mixture was stirred at 25 °C for 0.5 h.
  • Example 26 N- ⁇ 6-[4-(azetidin-1-yl)piperidin-1-yl]-2-[1-( ⁇ 1-[4-(2,4-dioxo-1,3-diazinan-1- yl)phenyl]piperidin-4-yl ⁇ methyl)piperidin-4-yl]-1-oxo-2,3-dihydro-1H-isoindol-5- yl ⁇ pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • 1-(4-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)phenyl)piperidine- 4-carbaldehyde 35.13 mg, 116.6 mmol
  • Example 30 N-[6-(cyclopropylmethoxy)-2-[(1r,4r)-4-( ⁇ 4-[4-(2,6-dioxopiperidin-3-yl)-3- oxopiperazin-1-yl]piperidin-1-yl ⁇ methyl)cyclohexyl]-2H-indazol-5-yl]pyrazolo[1,5-a]pyrimidine- 3-carboxamide
  • Step 1 tert-butyl 4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazine-1-carboxylate To a solution of tert-butyl 3-oxopiperazine-1-carboxylate (5.21 g, 26.0 mmol) in tetrahydrofuran (100 mL) was added sodium hydride (1.04 g, 26.0 m
  • the reaction mixture was heated at 60 °C for 30 min before its drop wise addition into a solution of 3-bromopiperidine-2,6-dione (2.5 g, 13.0 mmol) in tetrahydrofuran (50 mL).
  • the reaction mixture was stirred at 60 °C for 9.5 h, then quenched by 10% ammonium chloride solution (50 mL) at 0 °C and extracted with ethyl acetate (5 x 100 mL), washed with brine (100 mL), dried over anhydrous sodium sulfate, filtered, and concentrated in vacuum.
  • Step 2 3-(2-oxopiperazin-1-yl)piperidine-2,6-dione
  • tert-butyl 4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazine-1-carboxylate 0.5 g, 1.6 mmol
  • dichloromethane 5 mL
  • trifluoroacetic acid 7.70 g, 40.5 mmol, 5 mL
  • Step 3 benzyl 4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidine-1-carboxylate
  • acetic acid 5.49 g, 91.4 mmol, 5.23 mL
  • 3-(2- oxopiperazin-1-yl)piperidine-2,6-dione trifluoroacetic acid 10.45 g, 32.1 mmol
  • the reaction was stirred at 25 °C for 9.5 h, then quenched by water (100 mL) and basified with saturated sodium bicarbonate solution (pH 8), extracted with dichloromethane (3 x 200 mL). The orange phase was washed with brine (100 mL), dried over anhydrous sodium sulfate, and concentrated under reduced pressure.
  • Step 4 3-(2-oxo-4-(piperidin-4-yl) piperazin-1-yl)piperidine-2,6-dione
  • benzyl 4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidine-1- carboxylate (1 g, 2.3 mmol) in 2,2,2-trifluoroethanol (20 mL) was added 10% palladium on carbon (1 g, 939.7 ⁇ mol) under nitrogen atmosphere.
  • the suspension was degassed under vacuum and purged with hydrogen balloon several times.
  • Step 3 N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-formylcyclohexyl)-2H-indazol-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-(hydroxymethyl)cyclohexyl)- 2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 200 mg, 434.28 ⁇ mol, 1 eq
  • dichloromethane 15 mL
  • 1,1,1-triacetoxy-1,1-dihydro-1,2-benziodoxol-3-(1H)- one 552.59 mg, 1.30 mmol, 403.35 ⁇ L, 3 eq).
  • Step 4 N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3- oxopiperazin-1-yl)piperidin-1-yl)methyl)cyclohexyl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-formylcyclohexyl)-2H-indazol- 5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 120 mg, 261.72 ⁇ mol, 1 eq
  • 3-(2-oxo-4- (piperidin-4-yl)piperazin-1-yl)piperidine-2,6-dione 120 mg, 407.68 ⁇ mol, 1.56 eq
  • Example 31 N-(2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidin-1- yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • Step 1 N-(2-((1r,4r)-4-formylcyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • N-[2-[4-(hydroxymethyl)cyclohexyl]-6-isopropoxy-1-oxo-isoindolin-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (0.68 g, 1.47 mmol, 1
  • Step 2 N-(2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidin-1- yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • N-(2-((1r,4r)-4-formylcyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 17.
  • 3-(2-oxo-4- (piperidin-4-yl)piperazin-1-yl)piperidine-2,6-dione 17.3 mg, 578.3 ⁇ mol) in tetrahydrofuran (4.8 mL)
  • the white solid was further purified by prep-HPLC (column: Phenomenex Synergi C18150*25mm*10um; mobile phase: [water (formic acid)-acetonitrile]; B%: 11%-31%, 10 min) to afford N-(2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3- oxopiperazin-1-yl)piperidin-1-yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (23.5 mg, 8%) as a white solid.
  • Example 32 N-[6-(cyclopropylmethoxy)-2-[(1r,4r)-4-( ⁇ 1-[4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl]piperidin-4-yl ⁇ (methyl)amino)cyclohexyl]-2H-indazol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • Step 1 N-(2-(1-((1-(2-chloroethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-6- (cyclopropylmethoxy)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • 2-chloroacetaldehyde 366.0 mg, 1.87 mmol, 300.0 mL, 40% purity, 3.22 eq)
  • Step 2 N-(6-(cyclopropylmethoxy)-2-(1-((1-(2-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1- yl)ethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • N-(2-(1-((1-(2-chloroethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)- 6-(cyclopropylmethoxy)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 165 mg, 283.95 ⁇ mol, 1 eq)
  • the mixture was stirred at 100 °C for 9.5 h.
  • the reaction mixture was quenched by addition water 50 mL and extracted with dichloromethane (100 mL ⁇ 3), The orange phase was washed with brine 100 mL, dried over anhydrous sodium sulfate and concentrated under reduced pressure to give residue.
  • Example 33 N-[6-(cyclopropylmethoxy)-2-[(1r,4r)-4-( ⁇ 1-[4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl]piperidin-4-yl ⁇ (methyl)amino)cyclohexyl]-2H-indazol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • Step 1 tert-butyl 4-(((1r,4r)-4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)cyclohexyl)amino)piperidine-1-carboxylate
  • Step 2 tert-butyl 4-(((1r,4r)-4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)cyclohexyl)(methyl)amino)piperidine-1-carboxylate
  • a solution of tert-butyl 4-[[4-[6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)indazol-2-yl]cyclohexyl]amino]piperidine-1-carboxylate (0.42 g, 668.0 mmol, 981.6 mL) and formaldehyde (200.57 mg, 6.7 mmol, 184.01 mL) in 1,2-dichloroethane (3 mL) was allowed to stir for 10 min followed by the addition of sodium triacetoxy
  • Step 3 N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-(methyl(piperidin-4-yl)amino)cyclohexyl)-2H- indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • tert-butyl 4-[[4-[6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine- 3-carbonylamino)indazol-2-yl]cyclohexyl]-methyl-amino]piperidine-1-carboxylate (0.42 g, 653.4 ⁇ mol) in dichloromethane (4 mL) was added a solution of hydrochloric acid in methanol (4 M, 163.35 mL).
  • Step 4 N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-((1-(4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl)piperidin-4-yl)(methyl)amino)cyclohexyl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • Example 36 N-[1-oxo-6-(propan-2-yloxy)-2-[(1r,4r)-4-( ⁇ 1-[4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl]azetidin-3-yl ⁇ (methyl)amino)cyclohexyl]-2,3-dihydro-1H-isoindol-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • Step 1 2-((1r,4r)-4-((1-(4-(2,6-bis(benzyloxy)pyridin-3-yl)-3-fluorophenyl)azetidin-3- yl)(methyl)amino)cyclohexyl)-6-isopropoxy-5-nitroisoindolin-1-one
  • Step 2 3-(4-(3-(((1r,4r)-4-(5-amino-6-isopropoxy-1-oxoisoindolin-2- yl)cyclohexyl)(methyl)amino)azetidin-1-yl)-2-fluorophenyl)piperidine-2,6-dione
  • the suspension was degassed and purged with H 2 3 times.
  • the mixture was stirred under H 2 (15 psi) at 25 °C for 12 h.
  • the reaction mixture was filtered and washed with ethanol (2 x 20 mL). The collected filtrate was concentrated.
  • Step 3 N-(2-((1r,4r)-4-((1-(4-(2,6-dioxopiperidin-3-yl)-3-fluorophenyl)azetidin-3- yl)(methyl)amino)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • pyrazolo[1,5-a]pyrimidine-3-carboxylic acid (110.13 mg, 675.1 mmol) in pyridine (15 mL) was added 3-(4-(3-(((1r,4r)-4-(5-amino-6-isopropoxy-1-oxoisoindolin-2- yl)cyclohexyl)(methyl)amino)azetidin-1-yl)-2-fluorophenyl)piperidine-2,6-dione (130 mg,
  • the reaction was stirred at 50 °C for 12 h.
  • the mixture was poured into ice- water (40 mL).
  • the aqueous phase was extracted with dichloromethane (3 x 20 mL).
  • the combined organic phase was washed with brine (3 x 30 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under vacuum.
  • Example 37 N-[6-(cyclopropylmethoxy)-2-(1- ⁇ 2-[6-(2,6-dioxopiperidin-3-yl)-1,2,3,4- tetrahydroisoquinolin-2-yl]-2-oxoethyl ⁇ piperidin-4-yl)-2H-indazol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • Step 1 tert-butyl 6-(2,6-bis(benzyloxy)pyridin-3-yl)-3,4-dihydroisoquinoline-2(1H)- carboxylate A flask charged with 2,6-bis(benzyloxy)-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)pyridine (6.50 g, 15.6 mmol,), potassium phosphate (9.60 g, 45.2 mmol), tert-butyl 6- bromo-3
  • reaction mixture was quenched by water (50 mL) at 0 °C, and then diluted with ethyl acetate (50 mL) and extracted with ethyl acetate (3 x 150 mL). The combined organic layers were washed with brine (100 mL), dried over anhydrous sodium sulfate, filtered, and concentrated in vacuum.
  • Step 2 tert-butyl 6-(2,6-dioxopiperidin-3-yl)-3,4-dihydroisoquinoline-2(1H)-carboxylate
  • tert-butyl 6-(2,6-bis(benzyloxy)pyridin-3-yl)-3,4-dihydroisoquinoline- 2(1H)-carboxylate 3.0 g, 5.7 mmol
  • ethyl acetate 300 mL
  • 10% palladium on carbon 5 g, 4.7 mmol
  • Step 3 3-(1,2,3,4-tetrahydroisoquinolin-6-yl)piperidine-2,6-dione
  • tert-butyl 6-(2,6-dioxopiperidin-3-yl)-3,4-dihydroisoquinoline-2(1H)- carboxylate (1.98 g, 5.7 mmol) in dichloromethane (20 mL) was added trifluoroacetic acid (30.80 g, 27.0 mmol, 20 mL). The mixture was stirred at 25 °C for 0.5 h.
  • Step 4 tert-butyl 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)- 2H-indazol-2-yl)piperidin-1-yl)acetate
  • N-(6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-2H-indazol-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 0.3 g, 695.3 mmol
  • tert-butyl 2-bromoacetate 145.20 mg, 744.4 ⁇ mol, 110 mL
  • DMSO diisopropylethylamine
  • reaction mixture was quenched by water (50 mL) and extracted with ethyl acetate (3 x 100 mL), the organic phase was washed with brine (100 mL), dried over anhydrous sodium sulfate, and concentrated under reduced pressure.
  • the residue was purified by preparative TLC (eluted with a 10:1 solution of dichloromethane:methanol) to afford tert-butyl 2-(4-(6- (cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)-2H-indazol-2-yl)piperidin- 1-yl)acetate (250 mg, 66%) as a white solid.
  • Step 5 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)-2H- indazol-2-yl)piperidin-1-yl)acetic acid
  • 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine- 3-carboxamido)-2H-indazol-2-yl)piperidin-1-yl)acetate 120 mg, 219.9 mmol
  • dichloromethane 2 mL
  • trifluoroacetic acid (1.54 g, 13.5 mmol, 1 mL
  • Step 6 N-(6-(cyclopropylmethoxy)-2-(1-(2-(6-(2,6-dioxopiperidin-3-yl)-3,4- dihydroisoquinolin-2(1H)-yl)-2-oxoethyl)piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)piperidin-1-yl)acetic acid 107 mg, 218.6 mmol
  • 3- (1,2,3,4-tetrahydroisoquinolin-6-yl)piperidine-2,6-dione trifluoroacetic acid 150 mg, 418.6 mmol
  • Example 38 N-[1-oxo-6-(propan-2-yloxy)-2-[(1r,4r)-4- ⁇ [6-(2,6-dioxopiperidin-3-yl)-1,2,3,4- tetrahydroisoquinolin-2-yl]methyl ⁇ cyclohexyl]-2,3-dihydro-1H-isoindol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • the mixture was stirred at 25 °C for 11.5 h.
  • the residue was concentrated under vacuum and triethylamine was added to adjust the pH to between 7 and 8.
  • the mixture was extracted with dichloromethane (3 x 20 mL).
  • the combined organic phase was washed with brine (3 x 50 mL), dried over anhydrous sodium sulfate, filtered, and concentrated.
  • Example 39 N-[2-(1- ⁇ 2-[6-(2,6-dioxopiperidin-3-yl)-1,2,3,4-tetrahydroisoquinolin-2-yl]-2- oxoethyl ⁇ piperidin-4-yl)-1-oxo-6-(propan-2-yloxy)-2,3-dihydro-1H-isoindol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide
  • Step 1 tert-butyl 2-(4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidin-1-yl)acetate
  • Step 3 N-(2-(1-(2-(6-(2,6-dioxopiperidin-3-yl)-3,4-dihydroisoquinolin-2(1H)-yl)-2- oxoethyl)piperidin-4-yl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • the reaction mixture was stirred at 25 °C for 12 h.
  • the mixture was poured into ice-water (30 mL).
  • the aqueous phase was extracted with dichloromethane (3 x 20 mL).
  • the combined organic phase was washed with brine (2 x 30 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under vacuum.
  • Example 40 N-[1-oxo-6-(propan-2-yloxy)-2-[(1r,4r)-4- ⁇ [6-(2,4-dioxo-1,3-diazinan-1-yl)- 1,2,3,4-tetrahydroisoquinolin-2-yl]methyl ⁇ cyclohexyl]-2,3-dihydro-1H-isoindol-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide
  • Step 1 6-bromo-1,2,3,4-tetrahydroisoquinoline To a solution of tert-butyl 6-bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate (3 g, 9.6 mmol) in dichloromethane (30 mL) was added Trifluoroacetic acid (15.40 g, 135.1 mmol, 10 mL).
  • Step 2 benzyl 6-bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate
  • tetrahydrofuran 20 mL
  • water 20 mL
  • sodium carbonate 4.00 g, 37.7 mmol
  • N-N dimethyl chlorosilane 2.41 g, 14.2 mmol, 2.01 mL
  • Step 3 benzyl 6-amino-3,4-dihydroisoquinoline-2(1H)-carboxylate
  • benzyl 6-bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate 3 g, 8.7 mmol
  • diphenylmethanimine 1.80 g, 9.9 mmol, 1.67 mL
  • BINAP 540.00 mg, 867.2 ⁇ mol
  • tris(dibenzylideneacetone)dipalladium(0) (793.47 mg, 866.5 mmol) under nitrogen atmosphere, then to the mixture was added a solution of sodium tert-butoxide (2 M, 6.07 mL).
  • the mixture was degassed and purged with nitrogen atmosphere 3 times, and then the mixture was stirred at 90 °C for 12 h under nitrogen atmosphere.
  • the reaction mixture was filtered, quenched by water (50 mL) at 0 °C, diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (3 x 10 mL).
  • Step 4 3-((2-((benzyloxy)carbonyl)-1,2,3,4-tetrahydroisoquinolin-6-yl)amino)propanoic acid
  • benzyl 6-amino-3,4-dihydroisoquinoline-2(1H)-carboxylate 0.7 g, 2.5 mmol
  • acrylic acid 178.67 mg, 2.5 mmol, 170.16 mL
  • the reaction mixture was stirred at 100 °C for 12 h.
  • the reaction mixture was filtered and concentrated under reduced pressure.
  • Step 5 benzyl 6-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)-3,4-dihydroisoquinoline-2(1H)- carboxylate
  • acetic acid 4 mL
  • urea 677.83 mg, 11.3 mmol, 605.20 mL
  • Step 6 1-(1,2,3,4-tetrahydroisoquinolin-6-yl)dihydropyrimidine-2,4(1H,3H)-dione
  • a mixture of benzyl 6-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)-3,4- dihydroisoquinoline-2(1H)-carboxylate (0.1 g, 263.6 ⁇ mol) and 10% palladium on carbon (0.01 g) in trifluoroethanol (4 mL) was degassed and purged with hydrogen for 3 times, and then the mixture was stirred at 25 °C for 0.5 h under hydrogen atmosphere.
  • Step 7 N-(2-((1r,4r)-4-((6-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)-3,4-dihydroisoquinolin- 2(1H)-yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
  • N-(2-((1r,4r)-4-formylcyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide 113 mg, 244.9 mmol) in tetrahydrofuran (4 mL) and N,N-dimethylformamide (1 mL) at 0 °C was added 1-(1,2,3,4-tetrahydroisoquinolin-6- y
  • Example 41 Preparation of 6-(cyclopropylmethoxy)-2-(1-((1-(2-(2,6-dioxopiperidin-3-yl)-1,3- dioxoisoindolin-5-yl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin- 3-yl)-2H-indazole-5-carboxamide.
  • Step 1 5-bromo-4-fluoro-2-nitrobenzaldehyde
  • nitric acid 42.85 g, 442.01 mmol, 30.61 mL, 65% purity, 1.79 eq
  • sulfuric acid 200 mL
  • 3-bromo-4-fluorobenzaldehyde 50 g, 246.30 mmol, 1 eq
  • the mixture was stirred at 25 °C for 12 h.
  • the mixture was poured into ice-water (800 mL).
  • the aqueous phase was extracted with ethyl acetate (800 mL ⁇ 2).
  • Step 2 5-bromo-4-hydroxy-2-nitrobenzaldehyde
  • a solution of 5-bromo-4-fluoro-2-nitrobenzaldehyde (10 g, 40.32 mmol, 1 eq) in dimethylacetamide (200 mL) was added sodium acetate (13.23 g, 161.29 mmol, 4 eq).
  • the mixture was stirred at 70 °C for 12 h.
  • the mixture was treated with hydrochloric acid (1 M) and extracted with ethyl acetate (400 mL ⁇ 2).
  • Step 3 5-bromo-4-(cyclopropylmethoxy)-2-nitrobenzaldehyde
  • the aqueous phase was extracted with ethyl acetate (300 mL ⁇ 2).
  • the combined organic phase was washed with brine (300 mL ⁇ 2), dried with anhydrous sodium sulfate, filtered and concentrated in vacuum.
  • the residue was purified by silica gel chromatography (0-8% ethyl acetate in petroleum ether) to afford 5-bromo-4-(cyclopropylmethoxy)-2-nitrobenzaldehyde (10.3 g, 34.32 mmol, 94% yield) as a yellow solid.
  • Step 4 2-(1-(tert-butoxycarbonyl)piperidin-4-yl)-6-(cyclopropylmethoxy)-2H-indazole-5-carbo xylic acid
  • tert-butyl 4-(5-bromo-6-(cyclopropylmethoxy)-2H-indazol-2- yl)piperidine-1-carboxylate (1 g, 2.22 mmol, 1 eq) and potassium acetate (446.73 mg, 4.55 mmol, 2.05 eq) in dimethyl sulfoxide (20 mL) and water (4 mL) was added DPPF (246.19 mg, 444.08 mmol, 0.2 eq) and palladium acetate (49.85 mg, 222.0 mmol, 0.1 eq) under an atmosphere of N 2 .
  • the suspension was degassed and purged with carbon monoxide 3 times.
  • the mixture was stirred under carbon monoxide (50 psi) at 80 °C for 12 h.
  • the mixture was poured into ice-water (100 mL) and the pH was adjusted to 5 with acetic acid.
  • the aqueous phase was extracted with ethyl acetate (40 mL ⁇ 3).
  • the combined organic phase was washed with brine (50 mL ⁇ 3), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum.
  • Step 5 tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3-ylcarbamoyl)-2H- indazol-2-yl)piperidine-1-carboxylate
  • 2-(1-(tert-butoxycarbonyl)piperidin-4-yl)-6-(cyclopropylmethoxy)-2H- indazole-5-carboxylic acid (0.65 g, 1.56 mmol, 1 eq)
  • pyrazolo[1,5-a]pyrimidin-3-amine 230.84 mg, 1.72 mmol, 1.1 eq
  • 1-(3-dimethylaminopropyl)-3- ethylcarbodiimide hydrochloride (899.72 mg, 4.69 mmol, 3 eq).
  • Step 6 6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H- indazole-5-carboxamide
  • a solution of tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3- ylcarbamoyl)-2H-indazol-2-yl)piperidine-1-carboxylate 0.3 g, 564.33 mmol, 1 eq
  • dichloromethane 3 mL
  • the reaction was stirred at 25 °C for 1 h.
  • the reaction mixture was concentrated to give a residue.
  • the resulting mixture was concentrated under reduced pressure and the resulting suspension was filtered and washed with water (5 mL x 3) and acetonitrile (8 mL x 3).
  • Step 7 tert-butyl 3-((4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3-ylcarbamoyl)- 2H-indazol-2-yl)piperidin-1-yl)methyl)-3-fluoroazetidine-1-carboxylate
  • 6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin- 3-yl)-2H-indazole-5-carboxamide 160 mg, 370.81 mmol, 1 eq
  • tert-butyl 3- (bromomethyl)-3-fluoro-azetidine-1-carboxylate 198.84 mg, 741.62 mmol, 2 eq
  • dimethyl sulfoxide 5 mL
  • the reaction was stirred at 90 °C for 12 h.
  • the mixture was poured into ice-water (30 mL).
  • the aqueous phase was extracted with dichloromethane (20 mL ⁇ 3).
  • the combined organic phase was washed with brine (30 mL ⁇ 3), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum.
  • Step 8 6-(cyclopropylmethoxy)-2-(1-((3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-N- (pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole-5-carboxamide
  • tert-butyl 3-((4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin- 3-ylcarbamoyl)-2H-indazol-2-yl)piperidin-1-yl)methyl)-3-fluoroazetidine-1-carboxylate 150 mg, 242.44 mmol, 1 eq
  • dichloromethane 4 mL
  • Step 9 6-(cyclopropylmethoxy)-2-(1-((1-(2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-5- yl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole- 5-carboxamide
  • 6-(cyclopropylmethoxy)-2-(1-((3-fluoroazetidin-3-yl)methyl)piperidin- 4-yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole-5-carboxamide 150 mg, 237.11 mmol, 1 eq, trifluoroacetate, crude) in dimethyl sulfoxide (6 mL) was added N,N- diisopropylethyl
  • the reaction was stirred at 80°C for 12 h.
  • the mixture was poured into ice-water (40 mL).
  • the aqueous phase was extracted with dichloromethane (20 mL ⁇ 3).
  • the combined organic phase was washed with brine (30 mL ⁇ 2), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum.
  • PBMC Degradation Data PBMC DC 90 : A, B, C, or D.
  • A represents a DC 90 value ⁇ 10.0 nM
  • B represents a DC 90 value ⁇ 10.0 nM and ⁇ 25.0 nM
  • C represents a DC 90 value ⁇ 25.0 nM and ⁇ 50 nM
  • D represents a DC 90 value ⁇ 50 nM
  • PBMC DC 50 A, B, C, or D.
  • A represents a DC 50 value ⁇ 1.0 nM
  • B represents a DC 50 value ⁇ 1.0 nM and ⁇ 5.0 nM
  • C represents a DC 50 value ⁇ 5.0 nM and ⁇ 10 nM
  • D represents a DC 50 value ⁇ 10 nM.
  • PBMC D max A, B, C, or D.
  • IL-1 ⁇ , LPS, or R848 stimulated IL6 inhibition and IL-1 ⁇ stimulated IL8 inhibition assay
  • Human PBMC cells were seeded at 2.5x10 6 cells/mL, treated with compound overnight, and stimulated with the EC50 concentration of each stimulant (either IL-1B, LPS, or R848) determined for each donor. After 24hrs, media was collected and analyzed by MSD for IL6 and/or IL8 levels. Table 7.
  • Inhibition of IL6 in PBMCs after stimulation with LPS and R848 LPS stimulated IL6 inhibition/ R848 stimulated IL6 inhibition IC 50 A, B, C, or D.
  • A represents an IC 50 value ⁇ 10.0 nM
  • B represents an IC 50 value ⁇ 10.0 nM and ⁇ 50.0 nM
  • C represents an IC 50 value ⁇ 50.0 nM and ⁇ 100 nM
  • D represents an IC 50 value ⁇ 100 nM.
  • A represents a Y max value ⁇ 90
  • B represents a Y max value ⁇ 80 and ⁇ 90
  • C represents a Y max value ⁇ 70 and ⁇ 80
  • D represents a Y max value ⁇ 70.

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Abstract

The present disclosure relates to compounds that act as degraders of IRAK-4 protein kinase; pharmaceutical compositions comprising compounds of Formula (I); and methods of treating diseases and disorders associated with cancer and inflammation (e.g., rheumatoid arthritis).

Description

COMPOUNDS AND METHODS FOR THE TARGETED DEGRADATION OF IRAK-4
CROSS-REFERENCE TO RELATED APPLICATIONS
This application claims priority to U.S. Provisional Application Serial No. 63/369,115, filed July 22, 2022, which is incorporated herein by reference in its entirety.
BACKGROUND
E3 ubiquitin ligases like Cereblon confer substrate specificity for ubiquitination, and therefore are more attractive therapeutic targets than general proteasome inhibitors due to their specificity for certain protein substrates. Bifunctional compounds, such as those described in U.S. Patent Application Publication Nos. 2015/0291562 and 2014/0356322 (both incorporated herein by reference), function to recruit endogenous proteins to an E3 ubiquitin ligase for ubiquitination and degradation. In particular, the publications describe bifunctional or proteolysis targeting chimeric compounds (PROTAC® protein degraders), which find utility as modulators of targeted ubiquitination of a variety of polypeptides and proteins, which are then degraded via the proteasome system.
Interleukin-1 (IL-1) Receptor-Associated Kinase-4 (IRAK-4) is a serine/threonine kinase enzyme that plays an essential role in signal transduction by Toll/IL-1 receptors (TIRs). Diverse IRAK enzymes are key components in the signal transduction pathways mediated by interleukin-1 receptor (IL-1R) and Toll-like receptors (TLRs) (Janssens, S, et al. Mol. Cell. 11(2), 2003, 293-302). There are four members in the mammalian IRAK family: IRAK-1 , IRAK-2, IRAK-3, and IRAK-4. These proteins are characterized by a typical N- terminal death domain that mediates interaction with MyD88-family adaptor proteins and a centrally located kinase domain. Upon recruitment of MyD88 and IRAK-4 to the Tollinterleukin domain, activation leads to phosphorylation of IRAK-1 and/or IRAK-2 leading to engagement of TRAF6. Subsequent signaling results in activation of NF-KB and the release of various cytokines and chemokines. The MYD88 L265P mutation occurring in 91% Waldenstrom’s macroglobulinemia, 29% ABC DLBCL, 9% MALT lymphomas, and 3% CLL coordinates a constitutively active signalosome in which IRAK-4-mediated phosphorylation of IRAK-1 promotes the assembly of additional signaling proteins driving survival in these cancers.
Since IRAK-4 possesses kinase-dependent signaling activity (Lee KL, Ambler CM, Anderson DR, et al. J Med Chem. 2017;60(13):5521-42), degradation of IRAK-4 is a valuable inhibition and degradation target by small molecules. SUMMARY
Provided herein are compounds that degrade the IRAK-4 protein kinase. As such, these compounds are useful in the treatment of a variety of indications, including cancer and inflammation. Provided herein are compounds of Formula I:
Figure imgf000003_0001
or a pharmaceutically acceptable salt thereof.
In embodiments, the compound of Formula I is a compound of Formulae Ih, li, or Ij:
Figure imgf000003_0002
Figure imgf000004_0001
or a pharmaceutically acceptable salt thereof. In embodiments, the compound of Formula I is a compound of Formulae Ik, Im, Io, or Ip:
Figure imgf000004_0002
Figure imgf000005_0001
or a pharmaceutically acceptable salt thereof. In embodiments, the compound of Formula I is a compound of Formulae Iq or Ir:
Figure imgf000005_0002
Figure imgf000006_0001
or a pharmaceutically acceptable salt thereof. Also provided herein are pharmaceutical compositions comprising any one of the compounds described herein and a pharmaceutically acceptable excipient. Also provided herein are methods of treating a disease or disorder comprising administering to a subject an effective amount of any one of the compounds described herein. DETAILED DESCRIPTION Provided herein are compounds that degrade the IRAK-4 protein kinase. As such, these compounds, as well as pharmaceutical compositions that comprise these compounds, are useful in the treatment of a variety of indications, including cancer and inflammation diseases and disorders such as rheumatoid arthritis. Definitions In the specification, the singular forms (e.g., “a,” “an,” “the,” etc.) also include the plural, unless the context clearly dictates otherwise. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. In the case of conflict, the present specification controls. All percentages and ratios used herein, unless otherwise indicated, are by weight. Throughout the description, where compositions are described as having, including, or comprising specific components, it is contemplated that compositions also consist essentially of, or consist of, the recited components. The terms “hal,” “halo,” or “halogen,” as used herein, refer to an atom selected from the group consisting of fluorine, chlorine, bromine, and iodine. The term “alkyl,” as used herein, refers to saturated, straight-chain or branched hydrocarbon radicals containing, in certain embodiments, from one to twenty, including from one to ten, or from one to six, carbon atoms. Branched means that one or more lower C1-6 alkyl groups such as methyl, ethyl, or propyl are attached to a linear alkyl chain. Exemplary alkyl groups include methyl, ethyl, n-propyl, i-propyl, n-butyl, t-butyl, n-pentyl, and 3-pentyl. Examples of C1-6 alkyl radicals include, but are not limited to, methyl, ethyl, propyl, isopropyl, butyl, tert-butyl, neopentyl, n-hexyl radicals; and examples of C1-20 alkyl radicals include, but are not limited to, methyl, ethyl, propyl, isopropyl, n-butyl, tert-butyl, neopentyl, n-hexyl, heptyl, octyl radicals. Examples of C1-20 alkyl radicals include but are not limited to hexadecamethyl, hexadecaethyl, hexadecopropyl, octadecamethyl, octadecaethyl, octadecapropyl and the like. The terms “haloalkyl”, “haloalkenyl”, or “haloalkynyl”, as used herein refer to an alkyl, alkenyl or alkynyl, including straight-chain and branched, that is substituted with one or more halogens or halo groups. Examples of haloalkyl include but are not limited to CF3, CH2CF3, and CCl3. The term “cycloalkyl,” as used herein, denotes a monovalent group derived from a monocyclic or polycyclic saturated carbocyclic ring compound. Included within the term “cycloalkyl” are C3-10 ring members C3-8 ring members, and C3-6 ring members. Also included within the term “cycloalkyl” are monocyclic C4, C5, C6, and C7 cycloalkyl groups. Cycloalkyl groups can include mono- or bicyclic (e.g., having two fused or bridged rings) or spirocyclic ring systems. Examples of C3-8 cycloalkyl (3- to 8-membered cycloalkyl) include, but are not limited to cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclopentyl and cyclooctyl; and examples of C3-12 cycloalkyl include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, bicyclo [2.2.1] heptyl, and bicyclo [2.2.2] octyl and the like. “Heterocyclyl” or “heterocycloalkyl,” as used herein, are cyclic systems containing carbon and at least one heteroatom selected from N, O, S, and P, wherein there is not delocalized π electrons (aromaticity) shared among the ring carbon or heteroatoms, i.e., the cyclic ring system in non-aromatic. Included within the term “heterocycloalkyl” are 3–10 ring members, 4–7 ring members, 3–6 ring members, or 4–6 ring members. Also included within the term “heterocycloalkyl” are monocyclic 4-, 5-, 6- and 7-membered heterocycloalkyl groups. Heterocycloalkyl groups can include mono- or bicyclic (e.g., having two fused or bridged rings) or spirocyclic ring systems. In some embodiments, the heterocycloalkyl group is a monocyclic group having 1, 2 or 3 heteroatoms independently selected from nitrogen, sulfur, and oxygen. The heterocycloalkyl ring structure may be substituted by one or more substituents. The substituents can themselves be optionally substituted. Examples of heterocyclyl rings include, but are not limited to, oxetanyl, azetidinyl, tetrahydrofuranyl, tetrahydropyranyl, pyrrolidinyl, oxazolinyl, oxazolidinyl, thiazolinyl, thiazolidinyl, pyranyl, thiopyranyl, tetrahydropyranyl, dioxalinyl, piperidinyl, morpholinyl, thiomorpholinyl, thiomorpholinyl S-oxide, thiomorpholinyl S-dioxide, piperazinyl, azepinyl, oxepinyl, diazepinyl, tropanyl, oxazolidinonyl, and homotropanyl. As used herein, the term “aryl” means an aromatic carbocyclic system containing 1, 2 or 3 rings, wherein such rings may be fused, wherein fused is defined above. If the rings are fused, one of the rings must be fully unsaturated and the fused ring(s) may be fully saturated, partially unsaturated or fully unsaturated. The term “aryl” includes, but is not limited to, phenyl, naphthyl, indanyl, and 1,2,3,4-tetrahydronaphthalenyl. In embodiments, aryl groups have 6 carbon atoms. In embodiments, aryl groups have from six to ten carbon atoms. In embodiments, aryl groups have from six to sixteen carbon atoms. In embodiments, the aryl group has six to ten carbon atoms. As used herein, the term “heteroaryl” means an aromatic carbocyclic system containing 1, 2, 3, or 4 heteroatoms selected independently from N, O, and S and having 1, 2, or 3 rings wherein such rings may be fused, wherein fused is defined above. The term “heteroaryl” includes, but is not limited to, furanyl, thienyl, oxazolyl, thiazolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, isoxazolyl, isothiazolyl, oxadiazolyl, thiadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, imidazo[1,2-a]pyridinyl, pyrazolo[1,5-a]pyridinyl, 5,6,7,8- tetrahydroisoquinolinyl, 5,6,7,8-tetrahydroquinolinyl, 6,7-dihydro-5H-cyclopenta[b]pyridinyl, 6,7-dihydro-5H-cyclopenta-[c]pyridinyl, 1,4,5,6-tetrahydrocyclopenta[c]pyrazolyl, 2,4,5,6- tetrahydrocyclopenta[c]pyrazolyl, 5,6-dihydro-4H-pyrrolo[1,2-b]pyrazolyl, 6,7-dihydro-5H- pyrrolo[1,2-b][1,2,4]triazolyl, 5,6,7,8-tetrahydro-[1,2,4]triazolo[1,5-a]pyridinyl, 4,5,6,7- tetrahydropyrazolo[1,5-a]pyridinyl, 4,5,6,7-tetrahydro-1H-indazolyl and 4,5,6,7-tetrahydro- 2H-indazolyl. In embodiment, heteroaryl is 5-10 membered heteroaryl. In another embodiment, heteroaryl is 5-6 membered heteroaryl. It is to be understood that if an aryl, heteroaryl, cycloalkyl, or heterocyclyl moiety may be bonded or otherwise attached to a designated moiety through differing ring atoms (i.e., shown or described without denotation of a specific point of attachment), then all possible points are intended, whether through a carbon atom or, for example, a trivalent nitrogen atom. For example, the term “pyridinyl” means 2-, 3- or 4-pyridinyl, the term “thienyl” means 2- or 3-thienyl, and so forth. The term “independently selected” is used herein to indicate that, for a variable which occurs in more than one location in a genus, the identity of the variable is determined separately in each instance. For example, if Rx appears as a substituent on two different atoms, the two instances of Rx may be the same moiety, or different moieties. The same is true if a single atom is substituted with more than one instance of Rx. The identity of Rx in each instance is determined independently of the identity of the other(s). It will be appreciated that the compounds, as described herein, may be substituted with one, two, three, four, five or more (up to the total possible number of substituents for the particular compound) independently selected substituents or functional moieties. In general, the term “substituted” whether preceded by the term “optionally” or not, and substituents contained in formulas disclosed herein, refer to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent. When more than one position in any given structure is substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at each position. As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds. The permissible substituents may include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents of organic compounds. For purposes of this disclosure, heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valencies of the heteroatoms. The nitrogen and sulfur heteroatoms may optionally be oxidized, and the nitrogen heteroatom may optionally be quaternized. Examples of substituents on the moieties disclosed herein (e.g., alkyl, alkenyl, alkynyl, alkoxy, aryl, heteroaryl, cycloalkyl, cycloalkenyl, non-aromatic heterocycle groups) include, but are not limited to, alkenyl, alkynyl, halogen, haloalkyl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, heteroaryl, aryl, cycloalkyl, cycloalkenyl, non-aromatic heterocycle, hydroxyl, carbamoyl, oxo, amino, nitro, azido, -SH, and -CN. As described herein, compounds of the disclosure may optionally be substituted with one or more substituents, such as those described generally above, or as exemplified by particular classes, subclasses, and species of the disclosure. Unless otherwise indicated, an optionally substituted group may have a substituent at any or each substitutable position of the group, and when more than one position in any given structure is substituted with more than one substituent independently selected from a specified group, the substituent may be either the same or different at each substituted every position. It is also to be understood that floating substituents on ring-containing scaffolds (e.g., cycloalkyl, heterocycloalkyl, aryl, and heteroaryl) are groups that can be designated to any substitutable position defined by the ring. In a non-limiting example, the substituent:
Figure imgf000009_0001
covers, for example, both
Figure imgf000009_0002
A “pharmaceutical composition” is a formulation containing one or more therapeutic agents (e.g., one or more compounds of the present disclosure) in a form suitable for administration to a subject. In one embodiment, the pharmaceutical composition is in bulk form, e.g., for storage. Alternatively, the pharmaceutical composition is in unit dosage form. It can be advantageous to formulate compositions in dosage unit form for ease of administration and uniformity of dosage. Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of active reagent calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier. The specifications for the dosage unit forms of the invention are dictated by and directly dependent on the unique characteristics of the active agents and the particular therapeutic effect to be achieved, and the limitations in the art of compounding such an active agent for the treatment of individuals. A compound of the present disclosure may be administered in the form of a pharmaceutical composition comprising a pharmaceutically acceptable excipient. The formulation may be adapted for administration by any of a variety of routes including oral, buccal, rectal, vaginal, intranasal, intraocular, transdermal, subcutaneous, intravenous, or intramuscular. The term “pharmaceutical” or “pharmaceutically acceptable” when used herein as an adjective, means substantially non-toxic and substantially non-deleterious to the recipient. As used herein, the phrase “pharmaceutically acceptable” refers to those compounds, materials, compositions, carriers, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio. The present invention also includes pharmaceutically acceptable salts of the compounds described herein. The term “pharmaceutically acceptable salts” refers to derivatives of the disclosed compounds wherein the parent compound is modified by converting an existing acid or base moiety to its salt form. Examples of pharmaceutically acceptable salts include, but are not limited to, mineral or organic acid salts of basic residues such as amines; alkali or organic salts of acidic residues such as carboxylic acids; and the like. The pharmaceutically acceptable salts of the present invention include the non-toxic salts of the parent compound formed, e.g., from non-toxic inorganic or organic acids. The pharmaceutically acceptable salts of the present invention can be synthesized from the parent compound which contains a basic or acidic moiety by conventional chemical methods. Generally, such salts can be prepared by reacting the free acid or base forms of these compounds with a stoichiometric amount of the appropriate base or acid in water or in an organic solvent, or in a mixture of the two; generally, non-aqueous media like ether, ethyl acetate, alcohols (e.g., methanol, ethanol, iso-propanol or butanol) or acetonitrile (MeCN) are preferred. Lists of suitable salts are found in Remington's Pharmaceutical Sciences, 17th Ed., (Mack Publishing Company, Easton, 1985), p.1418, Berge et al., J. Pharm. Sci., 1977, 66(1), 1-19 and in Stahl et al., Handbook of Pharmaceutical Salts: Properties, Selection, and Use, (Wiley, 2002). It should be understood that all references to pharmaceutically acceptable salts include solvent addition forms (solvates) or crystal forms (polymorphs) as defined herein, of the same salt. Additionally, the compounds of the present disclosure, for example, the salts of the compounds, can exist in either hydrated or unhydrated (the anhydrous) form or as solvates with other solvent molecules. Nonlimiting examples of hydrates include monohydrates, dihydrates, etc. Nonlimiting examples of solvates include ethanol solvates, acetone solvates, etc. Some of the compounds of the present disclosure may exist in unsolvated as well as solvated forms such as, for example, hydrates. “Pharmaceutically acceptable carrier or excipient” means a carrier or excipient that is useful in preparing a pharmaceutical composition that is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes any excipient that is acceptable for veterinary use and/or human pharmaceutical use. A “pharmaceutically acceptable excipient” as used herein includes both one and more than one such excipient. The terms “treat,” “treating,” and “treatment,” etc., as used herein, refer to any action providing a benefit to a patient for which the present compounds may be administered, including the treatment of any disease state or condition which is modulated through the target protein to which the present compounds bind. Disease states or conditions, including cancer, inflammatory diseases/disorders, autoimmune diseases/disorders, neurodegenerative diseases, and/or cardiovascular diseases/disorders, which may be treated using compounds according to the present disclosure are set forth hereinabove. The term “disease state or condition” is used to describe any disease state or condition wherein protein dysregulation (i.e., the amount of protein expressed in a patient is elevated) occurs and where degradation of the protein in a subject or patient may provide beneficial therapy or relief of symptoms to a subject or patient in need thereof. In certain instances, the disease state or condition may be cured. The term “neoplasia” or “cancer” is used throughout the specification to refer to the pathological process that results in the formation and growth of a cancerous or malignant neoplasm, i.e., abnormal tissue that grows by cellular proliferation, often more rapidly than normal and continues to grow after the stimuli that initiated the new growth cease. Malignant neoplasms show partial or complete lack of structural organization and functional coordination with the normal tissue and most invade surrounding tissues, metastasize to several sites, and are likely to recur after attempted removal and to cause the death of the patient unless adequately treated. As used herein, the term neoplasia is used to describe all cancerous disease states and embraces or encompasses the pathological process associated with malignant hematogenous, ascitic and solid tumors. Exemplary cancers which may be treated by the present compounds either alone or in combination with at least one additional anti-cancer agent include squamous-cell carcinoma, basal cell carcinoma, adenocarcinoma, hepatocellular carcinomas, and renal cell carcinomas, cancer of the bladder, bowel, breast, cervix, colon, esophagus, head, kidney, liver, lung, neck, ovary, pancreas, prostate, and stomach; leukemias; benign and malignant lymphomas, particularly Burkitt’s lymphoma and Non-Hodgkin’s lymphoma; benign and malignant melanomas; myeloproliferative diseases; sarcomas, including Ewing’s sarcoma, hemangiosarcoma, Kaposi’s sarcoma, liposarcoma, myosarcomas, peripheral neuroepithelioma, synovial sarcoma, gliomas, astrocytomas, oligodendrogliomas, ependymomas, gliobastomas, neuroblastomas, ganglioneuromas, gangliogliomas, medulloblastomas, pineal cell tumors, meningiomas, meningeal sarcomas, neurofibromas, and Schwannomas; bowel cancer, breast cancer, prostate cancer, cervical cancer, uterine cancer, lung cancer, ovarian cancer, testicular cancer, thyroid cancer, astrocytoma, esophageal cancer, pancreatic cancer, stomach cancer, liver cancer, colon cancer, melanoma; carcinosarcoma, Hodgkin’s disease, Wilms’ tumor and teratocarcinomas. Additional cancers which may be treated using compounds according to the present disclosure include, for example, T-lineage Acute lymphoblastic Leukemia (T-ALL), T-lineage lymphoblastic Lymphoma (T-LL), Peripheral T- cell lymphoma, Adult T-cell Leukemia, Pre-B ALL, Pre-B Lymphomas, Large B-cell Lymphoma, Burkitt’s Lymphoma, B-cell ALL, Philadelphia chromosome positive ALL and Philadelphia chromosome positive CML. Compounds Provided herein are compounds that are degraders of the protein kinase IRAK-4 and are thus useful in the treatment of cancer and inflammation, including rheumatoid arthritis. Provided herein are compounds of Formula I:
Figure imgf000012_0001
or a pharmaceutically acceptable salt thereof, wherein ITM is:
Figure imgf000013_0002
wherein A is C(O)N(Ra) or N(Ra)C(O); W* is N, C, or CH; W1 and W6 are each independently C(O), O, N, CR2, C(R2)2, or NR2; W2, W3, W4, W5, W7, W8, W9, W10, W11, W12, W13, W14, and W15 are each independently selected from C, N, CR2, C(R2)2, and NR2, wherein at least three of W2, W3, W4, and W5 are C, C(R2)2, or CR2, and wherein at least four of W7, W8, W9, W10, W11, W12, W13, W14, and W15 are C, CR2, or C(R2)2; Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, C1-6 haloalkyl, OC1-6 alkyl, C3-10 cycloalkyl, C6-10 aryl, and 3-10 membered heterocycloalkyl, wherein C1-6 alkyl, C1-6 haloalkyl, OC1-6 alkyl, C3-10 cycloalkyl, C6-10 aryl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, three, four, or five R3; each R2 is independently selected from H, halo, C1-6 alkyl, C1-6 haloalkyl; each R3 is independently selected from H, halo, C1-6 alkyl, C1-6 haloalkyl, C3-10 cycloalkyl, C6-10 aryl, and 3–10 membered heterocycloalkyl; is a single bond or a double bond; and
Figure imgf000013_0003
is the point of attachment to LNK; LNK is:
Figure imgf000013_0001
wherein n is 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10; each L is independently selected from C(RL)2, C(O), O, S, S(O)2, N(RL), C3-10 cycloalkyl, 3–10 membered heterocycloalkyl, and C6-10 aryl, wherein C3-10 cycloalkyl, 3–10 membered heterocycloalkyl, and C6-10 aryl are optionally substituted with one, two, three, four, or five RLa; each RL is independently selected from H, halo, C1-6 alkyl, C1-6 haloalkyl, OC1-6 alkyl, N(C1-6 alkyl)2, NH2, OH, SH, CN, and C3-10 cycloalkyl; each RLa is independently selected from H, halo, and C1-6 alkyl; and CLM is:
Figure imgf000014_0001
wherein Q1 and Q4 are each independently selected from CR13, C(R13)2, C(O), N, and NH; Q2 and Q3 are each independently CR13 or N; R4, R6, R7, R9, and R11 are each independently selected from H, C1-6 alkyl, OC1-6 alkyl, and C1-6 haloalkyl; R5, R8, R10, and R12 are selected from H, halo, =O, C1-6 alkyl, OC1-6 alkyl, and C1-6 haloalkyl; each R13 is individually selected from H, C1-6 alkyl, C1-6 haloalkyl, and OC1-6 alkyl; ring B is selected from C6 aryl, 6-membered heteroaryl, and 6-membered heterocycloalkyl; and
Figure imgf000015_0001
is the point of attachment to LNK. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, A is C(O)N(Ra) or N(Ra)C(O); W* is N or C; W1 and W6 are each independently C(O), N, CR2, or C(R2)2; W2, W3, W4, W5, W7, W8, W9, W10, W11, W12, W13, W14, and W15 are each independently selected from C, N, CR2, C(R2)2, and NR2, wherein at least three of W2, W3, W4, and W5 are C, C(R2)2, or CR2 and wherein at least five of W7, W8, W9, W10, W11, W12, W13, W14, and W15 are C, CR2, or C(R2)2; Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R2 is independently H or C1-6 alkyl; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3-10 membered heterocycloalkyl; n is 1, 2, 3, 4, 5, 6, 7, or 8; each L is independently selected from C(RL)2, N(RL), C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl, wherein C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl, are optionally substituted with one, two, or three RLa; each RL is independently selected from H, halo, and C1-6 alkyl; each RLa is independently selected from H, halo, and C1-6 alkyl; Q1 and Q4 are each independently selected from CR13, C(R13)2, C(O), and N; Q2 and Q3 are each independently selected from CR13 and N; R4, R6, R7, R9, and R11 are each independently selected from H and C1-6 alkyl; R5, R8, R10, and R12 are selected from H, halo, =O, and C1-6 alkyl; each R13 is individually selected from H and C1-6 alkyl; and ring B is selected from C6 aryl, 6-membered heteroaryl, and 6-membered heterocycloalkyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, A is C(O)N(Ra) or N(Ra)C(O); W* is N or C; W1 and W6 are each independently C(O), N, CR2, or C(R2)2; W2, W3, W4, W5, W7, W8, W9, W10, W11, W12, W13, W14, and W15 are each independently selected from C, N, CR2, C(R2)2, and NR2, wherein at least three of W2, W3, W4, and W5 are C, CR2, or C(R2)2 and wherein at least six of W7, W8, W9, W10, W11, W12, W13, W14, and W15 are C, CR2, or C(R2)2; Ra is H or C1-6 alkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 4–7 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 4–7 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R2 is independently H or C1-6 alkyl; and each R3 is independently selected from H, C1-6 alkyl, C3-6 cycloalkyl, and 3–6 membered heterocycloalkyl; n is 1, 2, 3, 4, 5, or 6; each L is independently selected from C(RL)2, N(RL), C3-6 cycloalkyl, and 4–7 membered heterocycloalkyl, wherein C3-6 cycloalkyl, and 4–7 membered heterocycloalkyl, are optionally substituted with one, two, or three RLa; each RL is independently selected from H, halo, and C1-6 alkyl; each RLa is independently H or halo; Q1 and Q4 are each independently selected from CR13, C(R13)2, C(O), and N; Q2 and Q3 are each independently CR13 or N; R4, R6, R7, R9, and R11 are each independently H or C1-6 alkyl; R5, R8, R10, and R12 are selected from H, halo, =O, and C1-6 alkyl; each R13 is individually H or C1-6 alkyl; and ring B is selected from C6 aryl, 6-membered heteroaryl, and 6-membered heterocycloalkyl. In embodiments of Formula I, the ITM of Formula ITM-I is:
Figure imgf000017_0001
or a pharmaceutically acceptable salt thereof, wherein at least two of W1, W2, W5, and W6 are C, CR2, or C(R2)2. In still another embodiment of Formula I, the ITM of Formula ITM-I is:
Figure imgf000017_0002
or a pharmaceutically acceptable salt thereof. In embodiments of Formula I, the compound is Formulae Ia or Ib:
Figure imgf000018_0001
or a pharmaceutically acceptable salt thereof. In embodiments of Formula I, the compound is selected from Formulae Ic, Id, and Ie:
Figure imgf000018_0002
Figure imgf000019_0002
or a pharmaceutically acceptable salt thereof, wherein ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl.
In embodiments of Formula I, the compound is Formulae If or Ig:
Figure imgf000019_0001
or a pharmaceutically acceptable salt thereof, wherein ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl. In embodiments of Formula Ia: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3-10 membered heterocycloalkyl; Q1 is selected from CR13, C(R13)2, C(O), and N; R4 is H and C1-6 alkyl; R5 is selected from H, halo, =O, and C1-6 alkyl; and each R13 is individually H or C1-6 alkyl. In embodiments of Formula Ib: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; R6 and R7 are each independently H or C1-6 alkyl; and R8 is selected from H, halo, =O, and C1-6 alkyl. In embodiments of Formula Ic: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q1 is selected from CR13, C(R13)2, C(O), and N; R4 is selected from H and C1-6 alkyl; R5 is selected from H, halo, =O, and C1-6 alkyl; and each R13 is individually H or C1-6 alkyl. In embodiments of Formula Id: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q2 is CR13 or N; R9 is selected from H and C1-6 alkyl; R10 is selected from H, halo, =O, and C1-6 alkyl; each R13 is individually H or C1-6 alkyl; and ring B is selected from C6 aryl, 6-membered heteroaryl, and 6-membered heterocycloalkyl. In an embodiment of Formula Ie: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q3 is CR13 or N; Q4 is selected from CR13, C(R13)2, C(O), and N; R11 is H or C1-6 alkyl; R12 is selected from H, halo, =O, and C1-6 alkyl; and each R13 is individually H or C1-6 alkyl. In embodiments of Formula If: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q2 is CR13 or N; R9 is H or C1-6 alkyl; R10 is selected from H, halo, =O, and C1-6 alkyl; each R13 is individually H or C1-6 alkyl; and ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl. In embodiments of Formula Ig: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q3 is CR13 or N; Q4 is selected from CR13, C(R13)2, C(O), and N; R11 is H or C1-6 alkyl; R12 is selected from H, halo, =O, and C1-6 alkyl; and each R13 is individually H or C1-6 alkyl. In embodiments of Formula I, the LNK of Formula LNK is selected from Formulae LNK-I, LNK-II, and LNK-III:
Figure imgf000022_0001
Figure imgf000023_0002
or a pharmaceutically acceptable salt thereof, wherein Q5, Q6, Q7, Q8, Q9, and Q10 are each individually CH or N; W16 and W17 are selected from a bond, C(R14)2, C(O), and N(R15); each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; R16 is selected from H, halo, CN, C1-6 alkyl, and OC1-6 alkyl; p1, p2, p5, and p6 are 1, 2, or 3; p3, p4, and p7 are 0, 1, 2, or 3; and
Figure imgf000023_0001
is the point of attachment to ILM or CLM. In embodiments of Formula I, the compound is selected from Formulae Ih, Ii, or Ij:
Figure imgf000023_0003
Figure imgf000024_0002
or a pharmaceutically acceptable salt thereof. In embodiments of Formula I, the compound is selected from Formulae Ik, Im, Io, and Ip:
Figure imgf000024_0001
Figure imgf000025_0001
or a pharmaceutically acceptable salt thereof. In embodiments of Formula I, the compound is Formulae Iq or Ir:
Figure imgf000025_0002
Figure imgf000026_0001
or a pharmaceutically acceptable salt thereof. In embodiments of Formula Ih: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q1 is selected from CR13, C(R13)2, C(O), and N; Q5, Q6, and Q7 are each individually CH or N; W16 is selected from a bond, C(R14)2, C(O), and N(R15); R4 is H or C1-6 alkyl; R5 is selected from H, halo, =O, and C1-6 alkyl; each R13 is individually H or C1-6 alkyl; each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; R16 is selected from H, halo, CN, C1-6 alkyl, and OC1-6 alkyl; p1 and p2 are 1, 2, or 3; and p3 is 0, 1, 2, or 3. In embodiments of Formula Ii: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3-10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q5, Q6, and Q7 are each individually CH or N; W16 is selected from a bond, C(R14)2, C(O), and N(R15); R6 and R7 are each independently H or C1-6 alkyl; and R8 is selected from H, halo, =O, and C1-6 alkyl; each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; R16 is selected from H, halo, CN, C1-6 alkyl, and OC1-6 alkyl; p1 and p2 are 1, 2, or 3; and p3 is 0, 1, 2, or 3. In embodiments of Ij: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3-10 membered heterocycloalkyl; Q1 is selected from CR13, C(R13)2, C(O), and N; Q8 and Q9 are each individually selected from CH and N; R4 is H or C1-6 alkyl; R5 is selected from H, halo, =O, and C1-6 alkyl; each R13 is individually H or C1-6 alkyl; p4 is 0, 1, 2, or 3; and p5 and p6 are 1, 2, and 3. In embodiments of Formula Ik: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3-10 membered heterocycloalkyl; Q1 is selected from CR13, C(R13)2, C(O), and N; Q5, Q6, and Q7 are each individually selected from CH and N; W16 is selected from a bond, C(R14)2, C(O), and N(R15); R4 is H or C1-6 alkyl; R5 is selected from H, halo, =O, and C1-6 alkyl; each R13 is individually H or C1-6 alkyl; each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; R16 is selected from H, halo, CN, C1-6 alkyl, and OC1-6 alkyl; p1 and p2 are 1, 2, or 3; and p3 is 0, 1, 2, or 3. In embodiments of Formula Im: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q2 is CR13 or N; Q5, Q6, and Q7 are each individually selected from CH and N; W16 is selected from a bond, C(R14)2, C(O), and N(R15); R9 is H or C1-6 alkyl; R10 is selected from H, halo, =O, and C1-6 alkyl; and each R13 is individually H or C1-6 alkyl; each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; R16 is selected from H, halo, CN, C1-6 alkyl, and OC1-6 alkyl; p1 and p2 are 1, 2, or 3; p3 is 0, 1, 2, or 3; and ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl. In embodiments of Formula Io: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3-10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q3 is CR13 or N; Q4 is selected from CR13, C(R13)2, C(O), and N; Q10 is CH or N; W17 is selected from a bond, C(R14)2, C(O), and N(R15); R11 is H or C1-6 alkyl; R12 is selected from H, halo, =O, and C1-6 alkyl; each R13 is individually selected from H and C1-6 alkyl; each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; and p7 is 0, 1, 2, or 3. In embodiments of Formula Ip: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3-10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q2 is CR13 or N; Q8 and Q9 are each individually CH or N; R9 is H or C1-6 alkyl; R10 is selected from H, halo, =O, and C1-6 alkyl; and each R13 is individually H or C1-6 alkyl; p4 is 0, 1, 2, or 3; p5 and p6 are 1, 2, or 3; and ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl. In embodiments of Formula Iq: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q2 is CR13 or N; Q5, Q6, and Q7 are each individually selected from CH and N; W16 is selected from a bond, C(R14)2, C(O), and N(R15); R9 is H or C1-6 alkyl; R10 is selected from H, halo, =O, and C1-6 alkyl; and each R13 is individually H or C1-6 alkyl; each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; R16 is selected from H, halo, CN, C1-6 alkyl, and OC1-6 alkyl; p1 and p2 are 1, 2, or 3; p3 is 0, 1, 2, or 3; and ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl. In embodiments of Formula Ir: A is C(O)N(Ra) or N(Ra)C(O); Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3-10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; Q3 is selected from CR13 and N; Q4 is selected from CR13, C(R13)2, C(O), and N; Q10 is selected from CH and N; W17 is selected from a bond, C(R14)2, C(O), and N(R15); R11 is selected from H and C1-6 alkyl; R12 is selected from H, halo, =O, and C1-6 alkyl; each R13 is individually selected from H and C1-6 alkyl; each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; and p7 is 0, 1, 2, or 3. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W* is C. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W* is N. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W1 and W6 are each independently selected from CH, CH2, C(O), and N. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W1 is C(O). In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W1 is N. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W6 is CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W6 is CH2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, A is C(O)N(Ra). In embodiments of Formula I or a pharmaceutically acceptable salt thereof, A is N(Ra)C(O). In embodiments of Formula I or a pharmaceutically acceptable salt thereof, ring B is selected from phenyl, pyridinyl, and piperazinyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, ring B is phenyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, ring B is pyridinyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, ring B is piperazinyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R1 is OC1-6 alkyl or 4–7 heterocycloalkyl and R3 is C1-6 alkyl or 3–6 membered heterocycloalkyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R4 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R5 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R5 is halo. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R5 is OC1-6 alkyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R6 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R7 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R8 is H or halo. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R8 is halo. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R9 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R10 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R10 is halo. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R10 is =O. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R10 is OC1-6 alkyl. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R11 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R12 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q1 is C(O) or CH2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q2 is N or CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q3 is N or CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q4 is N or CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q5 is N or CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q6 is N or CH. In embodiments off Formula I or a pharmaceutically acceptable salt thereof, Q7 is N or CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q8 is N or CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Q9 is N or CH. In another embodiment of Formula I or a pharmaceutically acceptable salt thereof, Q10 is N or CH. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, wherein W16 is CH2, NH, or N(CH3). In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W17 is a bond. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, W17 is C(O). In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R16 is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, R16 is halo. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p1 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p1 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p2 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p2 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p3 is 0. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p3 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p3 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p4 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p5 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p5 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p6 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p6 is 2. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, p7 is 1. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Ra is H. In embodiments of Formula I or a pharmaceutically acceptable salt thereof, Ra is C1-6 alkyl. In embodiments of Formula I, LNK is selected from:
Figure imgf000032_0001
or a pharmaceutically acceptable salt thereof. In embodiments of Formula I, the compound is selected from
Figure imgf000033_0001
Figure imgf000034_0001
Figure imgf000035_0001
Figure imgf000036_0001
Figure imgf000037_0001
Figure imgf000038_0001
Figure imgf000039_0001
Figure imgf000040_0001
or a pharmaceutically acceptable salt thereof. Also provided herein are pharmaceutical compositions comprising any one of the compounds described herein, or a pharmaceutically acceptable salt thereof, with one or more pharmaceutically acceptable excipients. In embodiments, the pharmaceutical composition further comprises an additional bioactive agent, wherein the bioactive agent is an anti-cancer agent, an anti-inflammatory agent, an anti-neurodegenerative agent, or an anti-immunological agent. The compounds disclosed herein may exist as tautomers and optical isomers (e.g., enantiomers, diastereomers, diastereomeric mixtures, racemic mixtures, and the like). The absolute stereochemistry is specified according to the Cahn-Ingold-Prelog R-S system. Chiral centers, of which the absolute configurations are known, are labelled by prefixes R and S, assigned by the standard sequence-rule procedure, and preceded when necessary by the appropriate locants (Pure & Appl. Chem.45, 1976, 11–30). Certain examples contain chemical structures that are depicted or labelled as an (R*) or (S*). When (R*) or (S*) is used in the name of a compound or in the chemical representation of the compound, it is intended to convey that the compound is a pure single isomer at that stereocenter; however, absolute configuration of that stereocenter has not been established. Thus, a compound designated as (R*) refers to a compound that is a pure single isomer at that stereocenter with an absolute configuration of either (R) or (S), and a compound designated as (S*) refers to a compound that is a pure single isomer at that stereocenter with an absolute configuration of either (R) or (S). It is generally well known in the art that any compound that will be converted in vivo to provide a compound disclosed herein is a prodrug within the scope of the present disclosure. Compounds provided herein can also include all isotopes of atoms occurring in the intermediates or final compounds. Isotopes include those atoms having the same atomic number but different mass numbers. For example, isotopes of hydrogen include tritium and deuterium. One or more constituent atoms of the compounds of the invention can be replaced or substituted with isotopes of the atoms in natural or non-natural abundance. In some embodiments, the compound includes at least one deuterium atom. For example, one or more hydrogen atoms in a compound of the present disclosure can be replaced or substituted by deuterium. In some embodiments, the compound includes two or more deuterium atoms. In some embodiments, the compound includes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 deuterium atoms. Synthetic methods for including isotopes into organic compounds are known in the art (Deuterium Labeling in Organic Chemistry by Alan F. Thomas (New York, N.Y., Appleton-Century-Crofts, 1971; The Renaissance of H/D Exchange by Jens Atzrodt, Volker Derdau, Thorsten Fey and Jochen Zimmermann, Angew. Chem. Int. Ed. 2007, 7744-7765; The Organic Chemistry of Isotopic Labelling by James R. Hanson, Royal Society of Chemistry, 2011). Isotopically labeled compounds can used in various studies such as NMR spectroscopy, metabolism experiments, and/or assays. In the compounds provided herein, any atom not specifically designated as a particular isotope is meant to represent any stable isotope of that atom. Unless otherwise stated, when a position is designated specifically as “H” or “hydrogen,” the position is understood to have hydrogen at its natural abundance isotopic composition. Also, unless otherwise stated, when a position is designated specifically as “D” or “deuterium”, the position is understood to have deuterium at an abundance that is at least 3000 times greater than the natural abundance of deuterium, which is 0.015% (i.e., at least 45% incorporation of deuterium). In embodiments, the compounds provided herein have an isotopic enrichment factor for each designated deuterium atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least 5000 (75% deuterium), at least 5500 (82.5% deuterium incorporation), at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation), at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation), or at least 6633.3 (99.5% deuterium incorporation). Methods of Treatment This application pertains to methods of treating or ameliorating a disease state or condition that is modulated through or causally related to the target protein, i.e., IRAK-4. Provided herein are methods of treating a disease or disorder comprising administering to a subject an effective amount of a compound disclosed herein, or a therapeutically effective amount of a pharmaceutical composition disclosed herein. In embodiments, the disease or disorder is a neurodegenerative disease or disorder, an inflammatory disease or disorder, an immunological disease or disorder, and/or a cancer associated with signaling through signaling pathways regulated by IRAK-4, and/or the myddosome complex. In embodiments, the neurodegenerative and/or neuroinflammatory disease or disorder is stroke, traumatic brain injury, optic neuritis, Alzheimer’s disease, Parkinson’s disease, amyotrophic lateral sclerosis, Huntington's disease, cerebral ischemia, and neurodegenerative disease caused by traumatic injury, glutamate neurotoxicity, hypoxia, epilepsy, or graft versus host disease. In embodiments, the inflammatory disease or disorder is ocular allergy, conjunctivitis, keratoconjunctivitis sicca, vernal conjunctivitis, allergic rhinitis, autoimmune hematological disorders (e.g., hemolytic anemia, aplastic anemia, pure red cell anemia and idiopathic thrombocytopenia), systemic lupus erythematosus, rheumatoid arthritis, polychondritis, scleroderma, Wegener granulamatosis, dermatomyositis, chronic active hepatitis, myasthenia gravis, Stevens-Johnson syndrome, idiopathic sprue, autoimmune inflammatory bowel disease (e.g., ulcerative colitis and Crohn’s disease), irritable bowel syndrome, celiac disease, periodontitis, hyaline membrane disease, kidney disease, glomerular disease, alcoholic liver disease, multiple sclerosis, inflammation associated with or caused by multiple sclerosis, endocrine opthalmopathy, Grave’s disease, sarcoidosis, alveolitis, chronic hypersensitivity pneumonitis, primary biliary cirrhosis, uveitis (anterior and posterior), Sjogren’s syndrome, interstitial lung fibrosis, psoriatic arthritis, systemic juvenile idiopathic arthritis, nephritis, vasculitis, diverticulitis, interstitial cystitis, glomerulonephritis (e.g., including idiopathic nephrotic syndrome or minimal change nephropathy), chronic granulomatous disease, endometriosis, leptospirosis renal disease, glaucoma, retinal disease, headache, pain, complex regional pain syndrome, cardiac hypertrophy, muscle wasting, catabolic disorders, obesity, fetal growth retardation, hypercholesterolemia, heart disease, chronic heart failure, mesothelioma, anhidrotic ecodermal dysplasia, Behcet’s disease, incontinentia pigmenti, Paget’s disease, pancreatitis, hereditary periodic fever syndrome, asthma, acute lung injury, acute respiratory distress syndrome, eosinophilia, hypersensitivities, anaphylaxis, fibrositis, gastritis, gastroenteritis, nasal sinusitis, ocular allergy, silica induced diseases, chronic obstructive pulmonary disease (COPD), cystic fibrosis, acid-induced lung injury, pulmonary hypertension, polyneuropathy, cataracts, muscle inflammation in conjunction with systemic sclerosis, inclusion body myositis, myasthenia gravis, thyroiditis, Addison’s disease, lichen planus, appendicitis, atopic dermatitis, asthma, allergy, blepharitis, bronchiolitis, bronchitis, bursitis, cervicitis, cholangitis, cholecystitis, chronic graft rejection, colitis, conjunctivitis, cystitis, dacryoadenitis, dermatitis, juvenile rheumatoid arthritis, dermatomyositis, encephalitis, endocarditis, endometritis, enteritis, enterocolitis, epicondylitis, epididymitis, fasciitis, Henoch-Schonlein purpura, hepatitis, hidradenitis suppurativa, immunoglobulin A nephropathy, interstitial lung disease, laryngitis, mastitis, meningitis, myelitis myocarditis, myositis, nephritis, oophoritis, orchitis, osteitis, otitis, pancreatitis, parotitis, pericarditis, peritonitis, pharyngitis, pleuritis, phlebitis, pneumonitis, pneumonia, polymyositis, proctitis, prostatitis, pyelonephritis, rhinitis, salpingitis, sinusitis, stomatitis, synovitis, tendonitis, tonsillitis, ulcerative colitis, vasculitis, vulvitis, alopecia areata, erythema multiforma, dermatitis herpetiformis, scleroderma, vitiligo, hypersensitivity angiitis, urticaria, bullous pemphigoid, pemphigus vulgaris, pemphigus foliaceus, paraneoplastic pemphigus, epidermolysis bullosa acquisita, acute and chronic gout, chronic gouty arthritis, psoriasis, psoriatic arthritis, rheumatoid arthritis, Cryopyrin Associated Periodic Syndrome (CAPS), or osteoarthritis. In embodiments, the immunological disease or disorder is multiple sclerosis, rheumatoid arthritis, spondyloarthropathy, systemic lupus erythematosus, antibody-mediated inflammatory or autoimmune disease, graft-versus-host disease, sepsis, diabetes, psoriasis, atheroma, atherosclerosis, Sjogren’s syndrome, progressive systemic sclerosis, scleroderma, acute coronary syndrome, ischemia reperfusion, Crohn’s disease, endometriosis, glomerulonephritis, myasthenia gravis, idiopathic pulmonary fibrosis. In embodiments, the cancer is squamous-cell carcinoma, basal cell carcinoma, adenocarcinoma, hepatocellular carcinomas, and renal cell carcinomas, cancer of the bladder, bowel, breast, cervix, colon, esophagus, head, kidney, liver, lung, neck, ovary, pancreas, prostate, and stomach; leukemias; benign and malignant lymphomas, particularly Burkitt’s lymphoma and Non-Hodgkin’s lymphoma; benign and malignant melanomas; myeloproliferative diseases; sarcomas, including Ewing’s sarcoma, hemangiosarcoma, Kaposi’s sarcoma, liposarcoma, myosarcomas, peripheral neuroepithelioma, synovial sarcoma, gliomas, astrocytomas, oligodendrogliomas, ependymomas, gliobastomas, neuroblastomas, ganglioneuromas, gangliogliomas, medulloblastomas, pineal cell tumors, meningiomas, meningeal sarcomas, neurofibromas, and Schwannomas; bowel cancer, breast cancer, prostate cancer, cervical cancer, uterine cancer, lung cancer, ovarian cancer, testicular cancer, thyroid cancer, astrocytoma, esophageal cancer, pancreatic cancer, stomach cancer, liver cancer, colon cancer, melanoma; carcinosarcoma, Hodgkin’s disease, Wilms' tumor and teratocarcinomas, T-lineage Acute lymphoblastic Leukemia (T-ALL), T- lineage lymphoblastic Lymphoma (T-LL), Peripheral T-cell lymphoma, Adult T-cell Leukemia, Pre-B ALL, Pre-B Lymphomas, Large B-cell Lymphoma, Burkitt’s Lymphoma, B-cell ALL, Philadelphia chromosome positive ALL, or Philadelphia chromosome positive CML. Administration / Dosages / Formulations Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups, and elixirs. In addition to the active compounds, the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, dimethylformamide, oils (in particular, cottonseed, groundnut, com, germ, olive, castor, and sesame oils), glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof. Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, and perfuming agents. Injectable preparations (for example, sterile injectable aqueous or oleaginous suspensions) may be formulated according to the known art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution, suspension, or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer’s solution, U.S.P., and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose, any bland fixed oil can be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid are used in the preparation of injectables.
To prolong the effect of a drug, it is often desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This can be accomplished by the use of a liquid suspension of crystalline or amorphous material with poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle.
Compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this disclosure with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol, or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
Solid compositions of a similar type may also be employed as fillers in soft and hard filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like.
The active compounds can also be in micro-encapsulated form with one or more excipients as noted above. The solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings, and other coatings well known in the pharmaceutical formulating art. In such solid dosage forms the active compound may be admixed with at least one inert diluent such as sucrose, lactose, or starch. Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose. In the case of capsules, tablets, and pills, the dosage forms may also comprise buffering agents.
Dosage forms for topical or transdermal administration of a compound of this disclosure include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants, or patches. The active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required. Ophthalmic formulation, ear drops, eye ointments, powders and solutions are also contemplated as being within the scope of this disclosure.
The ointments, pastes, creams, and gels may contain, in addition to an active compound of this disclosure, excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof. Powders and sprays can contain, in addition to the compounds of this disclosure, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances. Sprays can additionally contain customary propellants such as chlorofluorohydrocarbons. Transdermal patches have the added advantage of providing controlled delivery of a compound to the body. Such dosage forms can be made by dissolving or dispensing the compound in the proper medium. Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel. Compounds of the present disclosure can be administered intratympanically, wherein a long, narrow, bore needle is passed through the ear canal and through the eardrum to administer medications into the middle ear space where they are absorbed by the inner ear. According to the methods of treatment of the present disclosure, disorders are treated or prevented in a subject, such as a human or other animal, by administering to the subject a therapeutically effective amount of a compound of the disclosure, in such amounts and for such time as is necessary to achieve the desired result. The term “effective amount” of a compound of the disclosure, as used herein, means a sufficient amount of the compound so as to decrease the symptoms of a disorder in a subject. As is well understood in the medical arts an effective amount of a compound of this disclosure will be at a reasonable benefit/risk ratio applicable to any medical treatment. In general, compounds of the disclosure will be administered in effective amounts via any of the usual and acceptable modes known in the art, either singly or in combination with one or more therapeutic agents. An effective amount can vary widely depending on the severity of the disease, the age and relative health of the subject, the potency of the compound used and other factors. In general, satisfactory results are indicated to be obtained systemically at daily dosages of from about 0.03 to 2.5 mg/kg per body weight. An indicated daily dosage in the larger mammal, e.g., humans, is in the range from about 0.5 mg to about 100 mg, conveniently administered, e.g., in divided doses up to four times a day or in retard form. Suitable unit dosage forms for oral administration comprise from ca.1 to 50 mg active ingredient. In embodiments, an effectiveamount or dose of the compounds of the present disclosure may range from about 0.1 mg/Kg to about 500 mg/Kg, alternatively from about 1 to about 50 mg/Kg. In general, treatment regimens according to the present disclosure comprise administration to a patient in need of such treatment from about 10 mg to about 1000 mg of the compound(s) of this disclosure per day in single or multiple doses. Therapeutic amounts or doses will also vary depending on route of administration, as well as the possibility of co-usage with other agents. Upon improvement of a subject’s condition, a maintenance dose of a compound, composition or combination of this disclosure may be administered, if necessary. Subsequently, the dosage or frequency of administration, or both, may be reduced, as a function of the symptoms, to a level at which the improved condition is retained; when the symptoms have been alleviated to the desired level, treatment should cease. The subject may, however, require intermittent treatment on a long-term basis upon any recurrence of disease symptoms.
It will be understood, however, that the total daily usage of the compounds and compositions of the present disclosure will be decided by the attending physician within the scope of sound medical judgment. The specific inhibitory dose for any particular patient will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific composition employed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed; and like factors well known in the medical arts.
The disclosure also provides for a pharmaceutical combination, e.g., a kit, comprising a) a first agent which is a compound of the disclosure as disclosed herein, in free form or in pharmaceutically acceptable salt form, and b) at least one co-agent. The kit can comprise instructions for its administration.
Some examples of materials which can serve as pharmaceutically acceptable carriers include, but are not limited to, ion exchangers; alumina; aluminum stearate; lecithin; serum proteins, such as human serum albumin; buffer substances such as phosphates, glycine, sorbic acid, or potassium sorbate; partial glyceride mixtures of saturated vegetable fatty acids; water; salts or electrolytes, such as protamine sulfate; disodium hydrogen phosphate; potassium hydrogen phosphate; sodium chloride; zinc salts; colloidal silica; magnesium trisilicate; polyvinyl pyrrolidone; polyacrylates; waxes; polyethylenepolyoxypropylene-block polymers; wool fat; sugars such as lactose, glucose and sucrose; starches such as corn starch and potato starch; cellulose and its derivatives such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc; excipients such as cocoa butter and suppository waxes; oils such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil, and soybean oil; glycols, such a propylene glycol or polyethylene glycol; esters, such as ethyl oleate and ethyl laurate; agar; buffering agents, such as magnesium hydroxide and aluminum hydroxide; alginic acid; pyrogen-free water; isotonic saline; Ringer's solution; ethyl alcohol; and phosphate buffer solutions. Further, non-toxic compatible lubricants such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, releasing agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the composition, according to the judgment of the formulator. The protein kinase inhibitors or pharmaceutical salts thereof may be formulated into pharmaceutical compositions for administration to animals or humans. These pharmaceutical compositions, which comprise an amount of the protein inhibitor effective to treat or prevent a protein kinase-mediated condition and a pharmaceutically acceptable carrier, are other embodiments of the present disclosure.
Kits
Also provided herein are kits comprising a compound capable of degrading IRAK-4 protein kinase selected from one or more compounds of disclosed herein, or pharmaceutically acceptable salts thereof, and instructions for use in treating a disorder associated with IRAK-4 protein kinases.
The disclosure provides a kit comprising a compound capable of degrading IRAK-4 protein kinase selected from a compound disclosed herein, or a pharmaceutically acceptable salt thereof.
Also provided herein are kits comprising a compound disclosed herein, or a pharmaceutically acceptable salt thereof for the treatment of any of the indications disclosed herein.
Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, numerous equivalents to the specific procedures, embodiments, claims, and examples described herein. Such equivalents were within the scope of this disclosure and covered by the claims appended hereto. For example, it should be understood, that modifications in reaction conditions, including but not limited to reaction times, reaction size/volume, and experimental reagents, such as solvents, catalysts, pressures, atmospheric conditions, e.g., nitrogen atmosphere, and reducing/oxidizing agents, with art-recognized alternatives and using no more than routine experimentation, are within the scope of the present application.
It is to be understood that wherever values and ranges are provided herein, all values and ranges encompassed by these values and ranges, are meant to be encompassed within the scope of the present disclosure. Moreover, all values that fall within these ranges, as well as the upper or lower limits of a range of values, are also contemplated by the present application.
The following examples further illustrate aspects of the present disclosure. However, they are in no way a limitation of the teachings of the present disclosure as set forth. EXAMPLES The compounds and methods disclosed herein are further illustrated by the following examples, which should not be construed as further limiting. The practice of the present disclosure will employ, unless otherwise indicated, conventional techniques of organic synthesis, cell biology, cell culture, and molecular biology, which are within the skill of the art. The following examples further illustrate aspects of the present disclosure. However, they are in no way a limitation of the teachings of the present disclosure as set forth. Abbreviations AcOH or HOAc Acetic acid Ac2O Acetic anhydride AIBN Azobisisobutyronitrile BrettPhos Pd G4 Dicyclohexyl-[3,6-dimethoxy-2-[2,4,6-tri(propan-2- yl)phenyl]phenyl]phosphane;methanesulfonic acid;N-methyl-2- phenylaniline;palladium CCl4 Carbon tetrachloride CDCl3 Chloroform-d CDI Carbonyldiimidazole Cs2CO3 Cesium carbonate DAST Diethylaminosulfur trifluoride DCE Dichloroethane DCM Dichloromethane DIEA or DIPEA Diisopropylethylamine DMAP Dimethylaminopyridine DMF N,N-Dimethylformamide DMP Dess-Martin periodinane DMSO Dimethyl sulfoxide DMSO-d6 Deuterated dimethyl sulfoxide (C2D6SO) EDCI 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide ESI Electrospray ionization EtOH Ethanol eq Equivalent(s) g Gram(s) h or hr. Hour(s) HATU 1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5- b]pyridinium 3-oxide hexafluorophosphate Hz Hertz HCl Hydrochloric acid HNO3 Nitric acid HPLC High performance liquid chromatography H2SO4 Sulfuric acid i-PrOH Iso-propanol K2CO3 Potassium carbonate K3PO4 Potassium phosphate LCMS Liquid chromatography-mass spectrometry m-CPBA Meta-Chloroperbenzoic acid MeCN Acetonitrile m/z Mass/charge MS Mass spectrometry MHz Megahertz MeOH Methanol μL Microliter(s) μm Micrometer(s) μmol Micromole(s) mg Milligram(s) mm Millimeter(s) mL Milliliter(s) mM Millimolar mmol Millimole(s) NaBH(OAc)3 Sodium triacetoxyborohydride NaN3 Sodium azide NH4Cl Ammonium chloride NMR Nuclear magnetic resonance NBS N-bromosuccinimide OMs Methanesulfonate OTf Trifluoromethanesulfonate Pd/C Palladium on carbon Pd2(dba)3 Tris(dibenzylideneacetone)dipalladium(0) Pd(dppf)Cl2·CH2Cl2 [1,1-Bis(diphenylphosphino)ferrocene]dichloropalladium(II), complex with dichloromethane Pd(OAc)2 Palladium (II) acetate PMB para-Methoxybenzyl PPh3 Triphenylphosphine psi Pound(s) per square inch Py Pyridine SFC Supercritical fluid chromatography SPhos Pd G3 (2-Dicyclohexylphosphino-2′,6′-dimethoxybiphenyl) [2-(2′- amino-1,1′-biphenyl)]palladium(II) methanesulfonate TBAF tetra-n-Butylammonium fluoride t-BuOK Potassium tert-butoxide tBuXPhos Pd G1 Chloro[2-(di-tert-butylphosphino)-2’,4’,6’-triisopropyl-1,1’- biphenyl][2-(2-aminoethyl)phenyl)]palladium(II) TEA Triethylamine TFA Trifluoroacetic acid TF2O Trifluoromethanesulfonic anhydride THF Tetrahydrofuran TLC Thin-layer chromatography TMSOTf Trimethylsilyl trifluoromethanesulfonate Xantphos 4,5-Bis(diphenylphosphino)-9,9-dimethylxanthene Xphos Pd G3 (2-Dicyclohexylphosphino-2’,4’,6’-triisopropyl-1,1’-biphenyl)[2- (2’-amino-1,1’-biphenyl)]palladium(II) methanesulfonate Scheme 1.
Figure imgf000051_0001
A compound of formula INT-I, wherein R is an ether, may be reacted with a reagent INT-II (commercially available or readily prepared using standard reaction techniques known to one skilled in the art) under reductive amination or alkylation conditions to produce a compound of formula INT-III, wherein L is as defined herein. Compounds of formula INT-III can be furnished from N-alkylation where Y is an appropriate leaving group (e.g. OMs, OTs, Cl, etc.) or through reductive amination where Y is an aldehyde or ketone. When Y is a leaving group, suitable reaction conditions are those for an alkylation reaction, e.g. diisopropylethylamine, potassium iodide, DMSO or acetonitrile, 80 °C. When Y is a carbonyl, suitable reaction conditions are those for a reductive amination reaction, e.g. sodium cyanoborohydride, methanol, dichloromethane, acetic acid, room temperature. Compounds of formula INT-III can then be reacted with compounds of formula INT-IV wherein Z is CH2 or C=O, R2 is either H or OMe, and X is an alcohol, triflate, or a halide to produce compounds of formula CMPD-V. Scheme A. Synthetic sequence for the preparation of N-[7-isopropoxy-2-(4- piperidyl)imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (INT-1), an example of generic intermediate INT-I in Scheme 1.
Figure imgf000052_0001
Synthesis of example INT-1. Step 1: tert-butyl 5-bromo-4-isopropoxy-pyridin-2-amine
Figure imgf000052_0002
To a solution of sodium (12.93 g, 562.4 mmol, 13.33 mL, 4.49 eq) in isopropanol (260 mL) was added 5-bromo-4-chloro-pyridin-2-amine (26.0 g, 125.3 mmol, 1 eq). The reaction mixture was stirred at 82 °C for 12 h. The reaction mixture was cooled to room temperature and poured into ice, then extracted with ethyl acetate (100 mL x 3). The combined organic layers were washed with brine (100 mL x 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by silica gel chromatography eluting with a gradient from 0 to 80% ethyl acetate in petroleum ether gradient.5-bromo-4-isopropoxy-pyridin-2-amine (10 g, 43.3 mmol, 34% yield) was obtained as light yellow solid. MS (ESI) m/z: 231.0 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 8.02 (s, 1H), 5.98 (s, 1H), 4.64 - 4.49 (m, 1H), 1.40 (d, J = 6.0 Hz, 6H). Step 2: tert-butyl 4-(6-bromo-7-isopropoxy-imidazo[1,2-a]pyridin-2-yl)piperidine-1- carboxylate
Figure imgf000052_0003
To a solution of 5-bromo-4-isopropoxy-pyridin-2-amine (950 mg, 4.11 mmol, 1 eq) and tert-butyl 4-(2-bromoacetyl)piperidine-1-carboxylate (1.51 g, 4.93 mmol, 1.2 eq) in ethyl alcohol (20 mL) was added sodium bicarbonate (691 mg, 8.22 mmol, 2 eq). The reaction mixture was stirred at 100 °C for 12 h. The reaction mixture was filtered and concentrated under reduced pressure to give a residue. The residue was purified by preparative HPLC (Waters Xbridge C18150 x 50mm x 10mm; mobile phase: [water(10mM ammonium bicarbonate)-acetonitrile]; B%: 50-80%). The desired compound tert-butyl 4-(6-bromo-7- isopropoxy-imidazo[1,2-a]pyridin-2-yl)piperidine-1-carboxylate (1.1 g, 2.51 mmol, 61% yield) was obtained as white solid. MS (ESI) m/z: 438.1 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 8.17 (s, 1H), 7.12 (s, 1H), 6.85 (s, 1H), 4.69 - 4.49 (m, 1H), 4.31 - 4.09 (m, 2H), 3.00 - 2.79 (m, 3H), 2.12 - 1.97 (m, 2H), 1.74 - 1.57 (m, 2H), 1.47 (s, 9H), 1.43 (d, J = 6.0 Hz, 6H). Step 3: tert-butyl 4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3-carbonylamino)imidazo[1,2- a]pyridin-2-yl]piperidine-1-carboxylate
Figure imgf000053_0001
To a solution of tert-butyl 4-(6-bromo-7-isopropoxy-imidazo[1,2-a]pyridin-2- yl)piperidine-1-carboxylate (1 g, 2.28 mmol, 1 eq) and pyrazolo[1,5-a]pyrimidine-3- carboxamide (370 mg, 2.28 mmol, 1 eq) in dioxane (10 mL) was added BrettPhos Pd G4 (210 mg, 0.23 mmol, 0.1 eq) and cesium carbonate (1.49 g, 4.56 mmol, 2 eq). The reaction mixture was stirred at 90 °C for 12 h under an atmosphere of nitrogen. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by silica gel chromatography eluting with a gradient of 0 to 10% methanol in dichloromethane. The desired compound tert-butyl 4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)imidazo[1,2-a]pyridin-2-yl]piperidine-1-carboxylate (1.11 g, 2.14 mmol, 93% yield) was obtained as yellow solid. MS (ESI) m/z: 520.3 [M+H]+.1H NMR (400 MHz, CDCl3) δ = 10.43 (s, 1H), 9.50 (s, 1H), 8.85 (dd, J = 1.6, 7.2 Hz, 1H), 8.76 (s, 1H), 8.70 (dd, J = 1.6, 4.0 Hz, 1H), 7.20 (s, 1H), 7.08 (dd, J = 4.0, 7.2 Hz, 1H), 6.93 (s, 1H), 4.81 - 4.69 (m, 1H), 4.29 - 4.13 (m, 2H), 2.97 - 2.81 (m, 3H), 2.14 - 2.05 (m, 2H), 1.79 - 1.62 (m, 2H), 1.55 (d, J = 6.0 Hz, 6H), 1.48 (s, 9H). Step 4: N-[7-isopropoxy-2-(4-piperidyl)imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000054_0001
To a solution of tert-butyl 4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)imidazo[1,2-a]pyridin-2-yl]piperidine-1-carboxylate (1.2 g, 2.31 mmol, 1 eq) in dichloromethane (10 mL) was added a solution of hydrogen chloride in methanol (4 M, 120 mL). The reaction mixture was stirred at 25 °C for 0.5 h. The reaction mixture was concentrated under reduced pressure to give a residue which was diluted in a 10:1 mixture of dichloromethane: methanol (20 mL). Ammonium hydroxide was added to adjust the pH of the solution between 8-9, then concentrated under reduced pressure. The residue was purified by column chromatography (petroleum ether: ethyl acetate = 1: 1 to dichloromethane: methanol = 10: 1) to afford N-[7-isopropoxy-2-(4-piperidyl)imidazo[1,2- a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (950 mg, 2.26 mmol, 98% yield) as a yellow solid. MS (ESI) m/z: 420.1 [M+H]+. Example 1: N-[2-[1-[[1-[2-(2,6-dioxo-3-piperidyl)-1,3-dioxo-isoindolin-5-yl]-3-fluoro-azetidin- 3-yl]methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide Step 1: tert-butyl 3-fluoro-3-[[4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)imidazo[1,2-a]pyridin-2-yl]-1-piperidyl]methyl]azetidine-1-carboxylate
Figure imgf000054_0002
To a solution of N-[7-isopropoxy-2-(4-piperidyl)imidazo[1,2-a]pyridin-6- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (800 mg, 1.91 mmol, 1 eq) and tert-butyl 3- fluoro-3-(p-tolylsulfonyloxymethyl)azetidine-1-carboxylate (1.37 g, 3.81 mmol, 2 eq) in DMSO (3 mL) was added N,N-diisopropylethylamine (1.23 g, 9.54 mmol, 5 eq). The reaction mixture was stirred at 100 °C for 12 h. The reaction mixture was quenched by the addition of water (10 mL), and then diluted with water (20 mL) and extracted with ethyl acetate (40 mL x 3). The combined organic layers were washed with brine (60 mL x 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by silica gel chromatography eluting with a gradient from 0 to 10% methanol in dichloromethane to afford tert-butyl 3-fluoro-3-[[4-[7-isopropoxy-6-(pyrazolo[1,5- a]pyrimidine-3-carbonylamino)imidazo[1,2-a]pyridin-2-yl]-1-piperidyl]methyl]azetidine-1- carboxylate (700 mg, 1.15 mmol, 60% yield) as a yellow solid. MS (ESI) m/z: 607.4 [M+H]+. Step 2: N-[2-[1-[(3-fluoroazetidin-3-yl)methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2- a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000055_0001
To a solution of tert-butyl 3-fluoro-3-[[4-[7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)imidazo[1,2-a]pyridin-2-yl]-1-piperidyl]methyl]azetidine-1-carboxylate (500 mg, 0.82 mmol, 1 eq) in dichloromethane (2 mL) was added trifluoroacetic acid (3.08 g, 27.01 mmol, 2.00 mL). The reaction mixture was stirred at 25 °C for 0.5 h and then concentrated under reduced pressure to give a residue which was diluted with a 10:1 solution of dichloromethane:methanol (20 mL). Ammonium hydroxide was added to adjust the pH of the solution between 8 and 9 before concentrating under reduced pressure. The residue was purified by prep-HPLC (Waters Xbridge 150*25mm*5μm; mobile phase: [water(10mM ammonium bicarbonate)-acetonitrile]; B%: 21-51%) to afford N-[2-[1-[(3- fluoroazetidin-3-yl)methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide (280 mg, 0.55 mmol, 67% yield) as an off-white solid. MS (ESI) m/z: 507.2 [M+H]+. Step 3: N-[2-[1-[[1-[2-(2,6-dioxo-3-piperidyl)-1,3-dioxo-isoindolin-5-yl]-3-fluoro-azetidin-3- yl]methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000055_0002
To a solution of N-[2-[1-[(3-fluoroazetidin-3-yl)methyl]-4-piperidyl]-7-isopropoxy- imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (90 mg, 0.18 mmol, 1 eq) in DMSO (3 mL) was added N,N-diisopropylethylamine (115 mg, 0.89 mmol, 5 eq) and 2- (2,6-dioxo-3-piperidyl)-5-fluoro-isoindoline-1,3-dione (98 mg, 0.36 mmol, 2 eq). The reaction mixture was stirred at 80 °C for 12 h. The reaction mixture was quenched by addition of water (10 mL), and then diluted with water (30 mL) and extracted with dichloromethane (30 mL x 3). The combined organic layers were washed with brine (60 mL x 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by preparative thin layer chromatography (eluted with dichloromethane: methanol = 10:1). The residue was then further purified by preparative HPLC (Phenomenex Synergi C18150*25mm*10μm; mobile phase: [water(0.225%formic acid)-acetonitrile]; B%: 3-33%) to afford N-[2-[1-[[1-[2-(2,6-dioxo-3-piperidyl)-1,3-dioxo- isoindolin-5-yl]-3-fluoro-azetidin-3-yl]methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2-a]pyridin- 6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (56.6 mg, 0.074 mmol, 41% yield, 99% purity) as a yellow solid. MS (ESI) m/z: 763.3 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 11.08 (s, 1H), 10.47 (s, 1H), 9.46 (s, 1H), 9.40 (dd, J = 1.2, 6.8 Hz, 1H), 8.88 (dd, J = 1.2, 4.0 Hz, 1H), 8.72 (s, 1H), 8.17 (s, 1H), 7.68 (d, J = 8.4 Hz, 1H), 7.60 (s, 1H), 7.36 (dd, J = 4.4, 7.2 Hz, 1H), 7.06 (s, 1H), 6.91 (d, J = 1.6 Hz, 1H), 6.77 (dd, J = 1.6, 8.0 Hz, 1H), 5.07 (dd, J = 5.2, 12.8 Hz, 1H), 4.95 - 4.81 (m, 1H), 4.28 - 4.10 (m, 4H), 3.03 - 2.80 (m, 6H), 2.63 - 2.55 (m, 2H), 2.35 - 2.24 (m, 2H), 2.07 - 1.98 (m, 1H), 1.96 - 1.89 (m, 2H), 1.76 - 1.59 (m, 2H), 1.47 (d, J = 6.0 Hz, 6H). Table 1. The following compounds were prepared in an analogous fashion as described for the synthesis of Example 1 according to the general synthetic sequence in Scheme 1.
Figure imgf000056_0001
Figure imgf000057_0001
Figure imgf000058_0001
Example 9: N-[2-[1-[[1-[2-(2,6-dioxo-3-piperidyl)-1,3-dioxo-isoindolin-5-yl]-3-fluoro-azetidin- 3-yl]methyl]-4-piperidyl]-7-isopropoxy-imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide Step 1: tert-butyl 4-(2-(5-bromo-2-imino-4-isopropoxypyridin-1(2H)-yl)acetyl)piperazine-1- carboxylate
Figure imgf000059_0001
A solution of 5-bromo-4-isopropoxypyridin-2-amine (2.6 g, 11.25 mmol, 1 eq), tert- butyl 4-(2-bromoacetyl)piperazine-1-carboxylate (7.02 g, 22.85 mmol, 2.03 eq) in ethanol (15 mL) was stirred at 25 °C for 12 h. The reaction mixture was filtered and the cake was washed with petroleum ether (20 mL × 3), and dried to afford tert-butyl 4-(2-(5-bromo-2- imino-4-isopropoxypyridin-1(2H)-yl)acetyl)piperazine-1-carboxylate (4.5 g, 9.84 mmol, 87% yield) as a white solid which was used in the next step without further purification.1H NMR (400 MHz, DMSO-d6) δ = 8.31 (s, 1H), 8.26 (br s, 2H), 6.59 (s, 1H), 5.12 (s, 2H), 4.83 - 4.72 (m, 1H), 3.54 - 3.37 (m, 8H), 1.42 (s, 9H), 1.39 (d, J = 6.0 Hz, 6H). Step 2: 1-(4-(6-bromo-7-isopropoxyimidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)-2,2,2- trifluoroethanone
Figure imgf000059_0002
To a solution of tert-butyl 4-(2-(5-bromo-2-imino-4-isopropoxypyridin-1(2H)- yl)acetyl)piperazine-1-carboxylate (4 g, 8.75 mmol, 1 eq) in 1,2-dichloroethane (160 mL) was added trifluoroacetic anhydride (18.12 g, 86.27 mmol, 12.00 mL, 9.86 eq) and the mixture was stirred at 100 °C for 3 h. The reaction mixture was poured into 100 mL of ice water and the pH was adjusted to 8 and further diluted with 1,2-dichloroethane (200 mL). The organic phase was separated, washed with brine (45 mL × 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was stirred with methanol (50 mL) at 25 °C for 0.5 h and concentrated under reduced pressure to give a residue. The residue was purified by preparative HPLC (column: Phenomenex Luna C18 (250*70mm,10 mm); mobile phase: [water (0.225% formic acid) - acetonitrile]; B%: 15-45%) to afford 1-(4-(6-bromo-7-isopropoxyimidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)-2,2,2- trifluoroethanone (3.0 g, 6.89 mmol, 79% yield) as a white solid. MS (ESI) m/z: 182.0 [M+H]+.1H NMR (400 MHz, CDCl3) δ = 8.09 (s, 1H), 6.76 (s, 1H), 6.67 (s, 1H), 4.63 - 4.52 (m, 1H), 3.85 (t, J = 4.8 Hz, 2H), 3.76 (t, J = 4.8 Hz, 2H), 3.35 (td, J = 4.8, 12.8 Hz, 4H), 1.42 (d, J = 6.0 Hz, 6H). Step 3: N-(7-isopropoxy-2-(4-(2,2,2-trifluoroacetyl)piperazin-1-yl)imidazo[1,2-a]pyridin-6- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000060_0001
To a solution of 1-(4-(6-bromo-7-isopropoxyimidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)- 2,2,2-trifluoroethanone (3 g, 6.89 mmol, 1 eq) and pyrazolo[1,5-a]pyrimidine-3-carboxamide (2.25 g, 13.88 mmol, 2.01 eq) in dioxane (105 mL) was added potassium carbonate (2 g, 14.47 mmol, 2.10 eq) and BrettPhos Pd G4 (650 mg, 706.12 mmol, 1.02e-1 eq). The reaction mixture was stirred at 90 °C for 12 h under an atmosphere of nitrogen and then quenched by the addition of water (100 mL) at 25 °C. The mixture was then extracted with ethyl acetate (200 mL × 3). The combined organic layers were washed with brine (200 mL), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: Phenomenex Luna C18 (250*70mm,10 μm); mobile phase: [water (0.225% formic acid) -acetonitrile]; B%: 15-45%) to afford N-(7-isopropoxy-2-(4-(2,2,2-trifluoroacetyl)piperazin-1-yl)imidazo[1,2-a]pyridin-6- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (1.2 g, 2.32 mmol, 34% yield) as a yellow solid. MS (ESI) m/z: 517.2 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 10.42 (s, 1H), 9.46 - 9.29 (m, 2H), 8.86 (dd, J = 1.6, 4.4 Hz, 1H), 8.71 (s, 1H), 7.34 (dd, J = 4.4, 6.8 Hz, 1H), 7.20 (s, 1H), 6.99 (s, 1H), 4.90 - 4.79 (m, 1H), 3.76 - 3.67 (m, 4H), 3.26 (br s, 4H), 1.45 (d, J = 6.0 Hz, 6H). Step 4: N-(7-isopropoxy-2-(piperazin-1-yl)imidazo[1,2-a]pyridin-6-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000060_0002
To a solution of N-(7-isopropoxy-2-(4-(2,2,2-trifluoroacetyl)piperazin-1-yl)imidazo[1,2- a]pyridin-6-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (400 mg, 774.48 μmol, 1 eq) in methanol (16 mL), water (4 mL) was added potassium carbonate (600.0 mg, 4.34 mmol, 5.61 eq) and stirred at 25 °C for 12 h. The reaction mixture was concentrated under reduced pressure and the residue was washed with a 10:1 solution of dichloromethane:methanol (25 mL × 2), filtered and concentrated under reduced pressure to afford N-(7-isopropoxy-2- (piperazin-1-yl)imidazo[1,2-a]pyridin-6-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (325 mg, 772.95 mmol, 100% yield) as a yellow solid which was used in the next step without further purification. MS (ESI) m/z: 421.0 [M+H]+. 1H NMR (400 MHz, DMSO-d6) δ = 10.42 (s, 1H), 9.43 - 9.33 (m, 2H), 8.90 - 8.84 (m, 1H), 8.71 (s, 1H), 7.35 (dd, J = 4.0, 6.8 Hz, 1H), 7.14 - 7.07 (m, 1H), 6.97 (s, 1H), 4.90 - 4.80 (m, 1H), 4.18 - 4.10 (m, 1H), 3.41 - 3.38 (m, 2H), 3.18 - 3.15 (m, 2H), 3.06 - 2.99 (m, 4H), 2.80 (br s, 1H), 1.45 (d, J = 6.0 Hz, 6H). Step 5: tert-butyl 5-bromo-2-fluorobenzoate
Figure imgf000061_0001
A solution of N,N'-methanediylidenedicyclohexanamine (8.3 g, 40.23 mmol, 8.14 mL, 1.1 eq) in tetrahydrofuran (80 mL) was added dropwise to a stirred solution of 5-bromo-2- fluorobenzoic acid (8 g, 36.53 mmol, 1 eq) and dimethylaminopyridine (4.5 g, 36.83 mmol, 1.01 eq) in tert-butanol (200 mL). The mixture was stirred at 25 °C for 12 h. The reaction mixture was filtered and concentrated under reduced pressure. The residue was purified by silica gel column chromatography eluted with a gradient from 20:1 to 5:1 petroleum ether:ethyl acetate to afford tert-butyl 5-bromo-2-fluorobenzoate (7.6 g, 27.62 mmol, 76% yield) as a colorless oil.1H NMR (400 MHz, DMSO-d6) δ = 7.91 (dd, J = 2.4, 6.4 Hz, 1H), 7.87 - 7.79 (m, 1H), 7.32 (dd, J = 8.8, 10.4 Hz, 1H), 1.53 (s, 9H). Step 6: (3-fluoroazetidin-3-yl)methanol
Figure imgf000061_0002
To a solution of tert-butyl 3-fluoro-3-(hydroxymethyl)azetidine-1-carboxylate (5.0 g, 24.36 mmol, 1 eq) in dichloromethane (50 mL) was added trifluoroacetic acid (38.50 g, 337.65 mmol, 25 mL, 13.86 eq). The mixture was stirred at 25 °C for 1 h. The reaction mixture was concentrated under reduced pressure to afford (3-fluoroazetidin-3-yl)methanol (8 g, 24.01 mmol, 99% yield, 2 trifluoroacetic acid) as a yellow oil which was used in the next step without further purification. Step 7: tert-butyl 2-fluoro-5-(3-fluoro-3-(hydroxymethyl)azetidin-1-yl)benzoate
Figure imgf000061_0003
Cesium carbonate (35.21 g, 108.06 mmol, 5 eq), (3-fluoroazetidin-3-yl)methanol (7.2 g, 21.61 mmol, 1 eq, 2 trifluoroacetic acid), tert-butyl 5-bromo-2-fluorobenzoate (5.95 g, 21.61 mmol, 1 eq), and (2-dicyclohexylphosphino-2,6-dimethoxybiphenyl)[2-(2-amino-1,1- biphenyl)]palladium(ii)methanesulfonate (1.80 g, 2.31 mmol, 1.07e-1 eq) in 2-methylbutan-2- ol (200 mL) was de-gassed and then heated to 90 °C for 12 h under an atmosphere of nitrogen. The reaction mixture was filtered and concentrated under reduced pressure to give a residue. The residue was purified by silica gel column chromatography (petroleum ether:ethyl acetate= 6:1 to 1:1) to afford tert-butyl 2-fluoro-5-(3-fluoro-3- (hydroxymethyl)azetidin-1-yl)benzoate (4.5 g, 15.03 mmol, 70% yield) as a yellow oil. MS (ESI) m/z: 300.0 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 7.13 (dd, J = 8.8, 10.4 Hz, 1H), 6.77 (dd, J = 3.2, 5.6 Hz, 1H), 6.72 (td, J = 3.6, 8.8 Hz, 1H), 5.30 (t, J = 6.0 Hz, 1H), 4.07 - 3.93 (m, 2H), 3.91 - 3.78 (m, 2H), 3.76 - 3.64 (m, 2H), 1.52 (s, 9H). Step 8: tert-butyl 2-fluoro-5-(3-fluoro-3-formylazetidin-1-yl)benzoate
Figure imgf000062_0001
Dimethyl sulfoxide (2.00 g, 25.60 mmol, 2.00 mL, 3.83 eq) was slowly added to a solution of oxalyl chloride (2.90 g, 22.85 mmol, 2.00 mL, 3.42 eq) in distilled methylene chloride (30 mL) at -78 °C, and the mixture was stirred at -78 °C for 0.5 h. Then, tert-butyl 2- fluoro-5-(3-fluoro-3-(hydroxymethyl)azetidin-1-yl)benzoate (2 g, 6.68 mmol, 1 eq) was added and the mixture was stirred at -78 °C for 1 h. Triethylamine (7.27 g, 71.85 mmol, 10.00 mL, 10.75 eq) was slowly added at -78 °C, and the mixture was stirred for 1 h. The reaction mixture was washed with brine (50 mL), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by silica gel column chromatography (Petroleum ether/Ethyl acetate=4/1 to 1/1) to afford tert-butyl 2- fluoro-5-(3-fluoro-3-formylazetidin-1-yl)benzoate (1.5 g, 5.05 mmol, 76% yield) as a light yellow oil. MS (ESI) m/z: 316.0 [M+H2O]+..1H NMR (400 MHz, DMSO-d6) δ = 7.20 - 7.10 (m, 1H), 6.96 - 6.57 (m, 2H), 4.30 - 3.72 (m, 4H), 1.51 (s, 9H). Step 9: tert-butyl 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1-yl)benzoate
Figure imgf000063_0001
To a solution of tert-butyl 2-fluoro-5-(3-fluoro-3-formylazetidin-1-yl)benzoate (500 mg, 1.68 mmol, 4.42 eq), N-(7-isopropoxy-2-(piperazin-1-yl)imidazo[1,2-a]pyridin-6- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (160 mg, 380.53 μmol, 1 eq) in dimethylsulfoxide (5 mL) and 1,2-dichloroethane (5 mL) was added sodium triacetoxyborohydride (500 mg, 2.36 mmol, 6.20 eq). The mixture was stirred at 25 °C for 30 min and then 4-methylmorpholine (368.0 mg, 3.64 mmol, 400 μL, 9.56 eq) was added into the mixture. The mixture was stirred at 25 °C for 9.5 h. The reaction mixture was quenched by addition of water (10 mL) and basified with saturated aqueous solution of sodium bicarbonate (pH=8), extracted with dichloromethane (20 mL × 3), The orange phase was washed with brine (10 mL), dried over anhydrous sodium sulfate and concentrated under reduced pressure to give a residue. The residue was purified by preparative TLC (eluted with dichloromethane: methanol = 12:1) to afford tert-butyl 2-fluoro-5-(3-fluoro-3-((4-(7- isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin- 1-yl)methyl)azetidin-1-yl)benzoate (167 mg, 237.97 mmol, 63% yield) as a yellow gum. MS (ESI) m/z: 702.1 [M+H]+.1H NMR (400 MHz, CDCl3) δ = 10.41 (s, 1H), 9.45 (br s, 1H), 8.85 (dd, J = 1.6, 6.8 Hz, 1H), 8.78 - 8.73 (m, 1H), 8.72 - 8.65 (m, 1H), 7.09 (dd, J = 4.0, 6.8 Hz, 1H), 7.02 - 6.89 (m, 3H), 6.57 (td, J = 3.6, 8.8 Hz, 1H), 4.81 - 4.70 (m, 1H), 4.04 (dd, J = 8.8, 15.2 Hz, 2H), 3.96 - 3.87 (m, 2H), 3.42 - 3.21 (m, 4H), 2.97 (s, 1H), 2.90 (s, 1H), 2.78 (br s, 4H), 1.59 (s, 9H), 1.54 (d, J = 6.0 Hz, 6H). Step 10: 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1-yl)benzoic acid
Figure imgf000063_0002
To a solution of tert-butyl 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1- yl)benzoate (330 mg, 470.24 μmol, 1 eq) in dichloromethane (2 mL) was added trifluoroacetic acid (3.08 g, 27.01 mmol, 2 mL, 57.44 eq). The mixture was stirred at 25 °C for 2 h. The reaction mixture was concentrated under reduced pressure to yield 2-fluoro-5- (3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)imidazo[1,2- a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1-yl)benzoic acid (350 mg, 460.7 mmol, 98% yield, trifluoroacetic acid) as a yellow solid which was used without further purification in the subsequent reaction. MS (ESI) m/z: 646.1 [M+H]+. Step 11: N-(2-(4-((1-(3-((2,6-dioxopiperidin-3-yl)carbamoyl)-4-fluorophenyl)-3-fluoroazetidin- 3-yl)methyl)piperazin-1-yl)-7-isopropoxyimidazo[1,2-a]pyridin-6-yl)pyrazolo[1,5-a]pyrimidine- 3-carboxamide
Figure imgf000064_0001
To a solution of 2-fluoro-5-(3-fluoro-3-((4-(7-isopropoxy-6-(pyrazolo[1,5-a]pyrimidine- 3-carboxamido)imidazo[1,2-a]pyridin-2-yl)piperazin-1-yl)methyl)azetidin-1-yl)benzoic acid (340 mg, 447.56 μmol, 1 eq, trifluoroacetic acid) and 3-aminopiperidine-2,6-dione (288.97 mg, 1.76 mmol, 3.92 eq, hydrochloride) in N,N-dimethylformamide (5 mL) was added O-(7- azabenzotriazole-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (346.76 mg, 911.98 μmol, 2.04 eq) and diisopropylethylamine (428.83 mg, 3.32 mmol, 577.94 μL, 7.41 eq). The mixture was stirred at 25 °C for 0.5 h. The reaction mixture was quenched by addition of water (50 mL) and extracted with dichloromethane (200 mL × 3). The orange phase was washed with brine (100 mL), dried over anhydrous sodium sulfate and concentrated under reduced pressure to give a residue. The residue was purified by preparative HPLC (column: Phenomenex Luna C18150*25mm* 10μm; mobile phase: [water (formic acid) - acetonitrile]; B%: 10%-40%, 10 min) to afford N-(2-(4-((1-(3-((2,6- dioxopiperidin-3-yl)carbamoyl)-4-fluorophenyl)-3-fluoroazetidin-3-yl)methyl)piperazin-1-yl)-7- isopropoxyimidazo[1,2-a]pyridin-6-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (49.7 mg, 62.47 μmol, 14% yield, 95% purity) as a yellow solid. MS (ESI) m/z: 756.2 [M+H]+. 1H NMR (400 MHz, DMSO-d6) δ = 10.86 (s, 1H), 10.43 (s, 1H), 9.39 (dd, J = 1.6, 7.2 Hz, 1H), 9.37 (s, 1H), 8.88 (dd, J = 1.6, 4.4 Hz, 1H), 8.72 (s, 1H), 8.46 (dd, J = 3.2, 8.0 Hz, 1H), 7.35 (dd, J = 4.0, 6.8 Hz, 1H), 7.19 - 7.11 (m, 2H), 6.98 (s, 1H), 6.73 (dd, J = 2.8, 5.6 Hz, 1H), 6.67 (td, J = 3.6, 8.8 Hz, 1H), 4.89 - 4.81 (m, 1H), 4.78 - 4.71 (m, 1H), 4.04 (dd, J = 9.2, 18.0 Hz, 2H), 3.91 (dd, J = 8.8, 20.8 Hz, 2H), 3.16 (br s, 4H), 2.95 - 2.86 (m, 2H), 2.84 - 2.73 (m, 1H), 2.69 - 2.62 (m, 4H), 2.57 - 2.53 (m, 1H), 2.16 - 1.96 (m, 2H), 1.46 (d, J = 6.0 Hz, 6H). Scheme 2.
Figure imgf000065_0001
A compound of formula INT-VI, where Y and n will be defined herein, can be readily prepared using standard reaction conditions to one skilled in the art as exemplified by the sequence described in Scheme B. A compound of formula INT-VI may be reacted with a reagent INT-VII, wherein G is C(O), N, or CH2 and Z is N or CH, to afford compounds of formula CMPD-VIII through N-alkylation where Y is an appropriate leaving group (e.g. OMs, OTs, Cl, etc.) or through reductive amination where Y is an aldehyde or ketone. When Y is a leaving group, suitable reaction conditions are those for an alkylation reaction, e.g. diisopropylethylamine, potassium iodide, DMSO or acetonitrile, 80 °C. When Y is a carbonyl, suitable reaction conditions are those for a reductive amination reaction, e.g. sodium cyanoborohydride, methanol, dichloromethane, acetic acid, room temperature. Scheme B: Synthetic sequence for the preparation of 1-(6-(2,6-dioxopiperidin-3-yl)pyridin-3- yl)piperidine-4-carbaldehyde (INT-2), an example of generic intermediate INT-VI in Scheme 2. Analogous synthetic intermediates can be prepared by commencing with alternative coupling partners in Step 1.
Figure imgf000066_0001
Synthesis of example INT-2. Step 1: 2-chloro-5-(4-(dimethoxymethyl)piperidin-1-yl)pyridine
Figure imgf000066_0002
A mixture of 5-bromo-2-chloro-pyridine (1.21 g, 6.3 mmol), 4- (dimethoxymethyl)piperidine (1 g, 6.3 mmol), sodium tert-butoxide (905 mg, 9.4 mmol), tris(dibenzylideneacetone)dipalladium(0) (575 mg, 628 μmol) and Xantphos (1.09 g, 1.9 mmol) in toluene (40 mL) was degassed and purged with nitrogen for 3 times, and then the mixture was stirred at 100 °C for 12 h under nitrogen atmosphere. The reaction mixture was concentrated in vacuo. The residue was purified by silica gel column chromatography (petroleum ether/ethyl acetate = 20/1 to 1/1) to afford 2-chloro-5-(4- (dimethoxymethyl)piperidin-1-yl)pyridine (0.5 g, 29 %) as a yellow solid.MS (ESI) m/z: 270.8 [M+H]+. Step 2: 2',6'-bis(benzyloxy)-5-(4-(dimethoxymethyl)piperidin-1-yl)-2,3'-bipyridine
Figure imgf000066_0003
A mixture of 2-chloro-5-(4-(dimethoxymethyl)piperidin-1-yl)pyridine (300 mg, 1.1 mmol), 2,6-dibenzyloxy-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine (554 mg, 1.3 mmol), potassium phosphate (1.5 M, 1.48 mL), Mesylate[(di(1-adamantyl)-n- butylphosphine)-2-(2′-amino-1,1′-biphenyl)]palladium(II) (80 mg, 110 μmol) in N,N- dimethylacetamide (15 mL) was degassed and purged with nitrogen 3 times, then the mixture was stirred at 60 °C for 2 h under a nitrogen atmosphere. To the reaction mixture was added water (50 mL) and the mixture was extracted with ethyl acetate (3 x 50 mL). The combined organic phase was washed with brine (50 mL), dried over anhydrous sodium sulfate, filtered, and concentrated in vacuo. The residue was purified by column chromatography (petroleum ether/ethyl acetate = 20/1 to 1/1) to afford 2',6'-bis(benzyloxy)-5- (4-(dimethoxymethyl)piperidin-1-yl)-2,3'-bipyridine (380 mg, 65%) as a white solid. MS (ESI) m/z: 526.3 [M+H]+. Step 3: 3-(5-(4-(dimethoxymethyl)piperidin-1-yl)pyridin-2-yl)piperidine-2,6-dione
Figure imgf000067_0001
To a solution of 2',6'-bis(benzyloxy)-5-(4-(dimethoxymethyl)piperidin-1-yl)-2,3'- bipyridine (200 mg, 380 μmol) in ethyl acetate (10 mL) was added 10% palladium/carbon (200 mg, 606 μmol) under nitrogen. The suspension was degassed under vacuum and purged with hydrogen several times. The mixture was stirred under hydrogen (15 psi) at 25°C for 12 h. The mixture was filtered, concentrated in vacuo to afford 3-(5-(4- (dimethoxymethyl)piperidin-1-yl)pyridin-2-yl)piperidine-2,6-dione (90 mg, crude) as a white solid. MS (ESI) m/z: 348.1 [M+1]+. Step 4: 1-(6-(2,6-dioxopiperidin-3-yl)pyridin-3-yl)piperidine-4-carbaldehyde
Figure imgf000067_0002
To a solution of 3-(5-(4-(dimethoxymethyl)piperidin-1-yl)pyridin-2-yl)piperidine-2,6- dione (90 mg, 259 μmol) in dichloromethane (5 mL) was added trifluoroacetic acid (8.66 g, 75 mmol, 5.63 mL). The mixture was stirred at 25 °C for 0.5 h, then concentrated in vacuo to afford 1-(6-(2,6-dioxopiperidin-3-yl)pyridin-3-yl)piperidine-4-carbaldehyde (78 mg, crude) as a white solid. Scheme C. Synthetic sequence for the preparation of N-[7-isopropoxy-2-(4- piperidyl)imidazo[1,2-a]pyridin-6-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (INT-3), an example of generic intermediate INT-VII in Scheme 2.
Figure imgf000068_0001
Synthesis of example INT-3. Step 1: methyl 5-hydroxy-2-methylbenzoate
Figure imgf000068_0002
5-hydroxy-2-methylbenzoic acid (5.0 g, 32.9 mmol, 1 eq) and hydrogen chloride/methanol (4 M, 40 mL, 4.87 eq) were stirred at 40 °C for 12 h. The reaction mixture was then concentrated under reduced pressure to afford methyl 5-hydroxy-2- methylbenzoate (5.0 g, 30.1 mmol, 92% yield) as a yellow solid which was used in the next step without further purification. MS (ESI) m/z: 167.2 [M+H]+. Step 2: methyl 5-hydroxy-2-methyl-4-nitrobenzoate
Figure imgf000069_0001
To an ice-cooled solution of methyl 5-hydroxy-2-methylbenzoate (8.0 g, 48.1 mmol, 1 eq) in HOAc (30 mL) and acetic anhydride (60 mL) was added copper (II) nitrate, trihydrate (17.60 g, 72.85 mmol, 1.51 eq). The reaction mixture was allowed to stir at 0 °C for 1.5 h. The reaction mixture was poured into ice water (1000 mL) and extracted with ethyl acetate (400 mL × 3). To the combined organic phase was added a saturated aqueous solution of sodium bicarbonate (600 mL) and the mixture was stirred at 25 °C for 12 h. The organic phase was then separated, and the aqueous phase was extracted with ethyl acetate (200 mL × 2). The combined organic phase was washed with water and dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (eluted with petroleum ether/ethyl acetate = 20:1 to 10:1) to afford methyl 5-hydroxy-2-methyl-4-nitrobenzoate (1.3 g, 6.16 mmol, 13% yield) as a yellow solid. Step 3: methyl 5-acetoxy-2-methyl-4-nitrobenzoate
Figure imgf000069_0002
To a solution of methyl 5-hydroxy-2-methyl-4-nitrobenzoate (2.5 g, 11.8 mmol, 1 eq) in dichloromethane (15 mL) was added triethylamine (4.79 g, 47.3 mmol, 6.59 mL, 4 eq) and acetic anhydride (3.02 g, 29.6 mmol, 2.77 mL, 2.5 eq). The mixture was stirred at 25 °C for 12 h. The reaction mixture was poured into water (200 mL) and extracted with ethyl acetate (100 mL × 3). The combined organic phase was washed with water (100 mL × 3), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silicon dioxide, eluted with petroleum ether/ethyl acetate = 20:1 to 10:1) to afford methyl 5-acetoxy-2-methyl-4- nitrobenzoate (2.8 g, 11.1 mmol, 93% yield) as a yellow solid. Step 4: methyl 5-acetoxy-2-(bromomethyl)-4-nitrobenzoate
Figure imgf000069_0003
To a stirred solution of methyl 5-acetoxy-2-methyl-4-nitrobenzoate (2.4 g, 9.5 mmol, 1 eq) in carbon tetrachloride (40 mL) was added NBS (3.37 g, 18.96 mmol, 2 eq) and benzoyl peroxide (344.4 mg, 1.42 mmol, 0.15 eq). The mixture was stirred at 95 °C for 12 h under an atmosphere of nitrogen. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (eluted with petroleum ether/ ethyl acetate = 20:1 to 5:1) to afford methyl 5-acetoxy-2-(bromomethyl)-4- nitrobenzoate (3.1 g, 9.3 mmol, 98% yield) as a yellow solid. Step 5: tert-butyl 4-(6-hydroxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1-carboxylate
Figure imgf000070_0001
To a solution of tert-butyl 4-aminopiperidine-1-carboxylate (7.48 g, 37.3 mmol, 4 eq) in tetrahydrofuran (20 mL) was added diisopropylethylamine (2.41 g, 18.7 mmol, 3.25 mL, 2 eq), followed by the slow addition of a solution of methyl 5-acetoxy-2-(bromomethyl)-4- nitrobenzoate (3.1 g, 9.3 mmol, 1 eq) in tetrahydrofuran (10 mL) over a period of 30 min at 40 °C. The mixture was then allowed to stir at 60 °C for 12 h. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by preparative HPLC (column: Phenomenex Synergi Max-RP 250 × 50 mm × 10 μm; mobile phase: [water (0.225% formic acid) - acetonitrile]; B%: 30%-60%) to afford tert-butyl 4-(6- hydroxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1-carboxylate (1.0 g, 2.6 mmol, 28% yield) as a yellow solid. MS (ESI) m/z: 322.2 [M-tBu+H]+.1H NMR (400 MHz, CDCl3) δ = 10.67 (s, 1H), 8.24 (s, 1H), 7.63 (s, 1H), 4.48 - 4.38 (m, 1H), 4.37 (s, 2H), 4.34 - 4.21 (m, 2H), 2.88 (br t, J = 12.0 Hz, 2H), 1.86 (br dd, J = 2.0, 12.0 Hz, 2H), 1.69 (br dd, J = 4.0, 12.4 Hz, 2H), 1.49 (s, 9H). Step 6: tert-butyl 4-(6-isopropoxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1-carboxylate
Figure imgf000070_0002
To a solution of tert-butyl 4-(6-hydroxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1- carboxylate (900 mg, 2.38 mmol, 1 eq) and 2-bromopropane (15.0 g, 121.96 mmol, 11.45 mL, 51.14 eq) in acetonitrile (40 mL) was added potassium carbonate (1.65 g, 11.92 mmol, 5 eq). The mixture was stirred at 80 °C for 12 h. The reaction mixture was filtered, and the filtrate was concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silicon dioxide, eluted with petroleum ether/ethyl acetate = 5:1 to 1:1) to afford tert-butyl 4-(6-isopropoxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1- carboxylate (700 mg, 1.67 mmol, 70% yield) as a yellow solid. MS (ESI) m/z: 364.2 [M- tBu+H]+. Step 7: tert-butyl 4-(5-amino-6-isopropoxy-1-oxoisoindolin-2-yl)piperidine-1-carboxylate
Figure imgf000071_0001
To a solution of tert-butyl 4-(6-isopropoxy-5-nitro-1-oxoisoindolin-2-yl)piperidine-1- carboxylate (700 mg, 1.67 mmol, 1 eq) in 2,2,2-trifluoroethanol (15 mL) was added palladium on carbon (100 mg, 93.97 mmol, 10% purity, 0.0563 eq) under an atmosphere of nitrogen. The suspension was degassed under vacuum and purged with hydrogen gas several times. The mixture was stirred under hydrogen (15 psi) at 25 °C for 2 h. The reaction mixture was filtered, and the filtrate was concentrated under reduced pressure to give a residue. The crude product tert-butyl 4-(5-amino-6-isopropoxy-1-oxoisoindolin-2-yl)piperidine-1- carboxylate (649.5 mg, 1.67 mmol, >98% yield) afforded as a yellow solid was used in the subsequent reaction without further purification. MS (ESI) m/z: 334.2 [M-tBu+H]+. Step 8: tert-butyl 4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidine-1-carboxylate
Figure imgf000071_0002
To a solution of tert-butyl 4-(5-amino-6-isopropoxy-1-oxoisoindolin-2-yl)piperidine-1- carboxylate (300 mg, 770.2 mmol, 1 eq) and pyrazolo[1,5-a]pyrimidine-3-carboxylic acid (200 mg, 1.23 mmol, 1.59 eq) in DMF (10 mL) was added diisopropylethylamine (300.0 mg, 2.32 mmol, 404.3 μL, 3.01 eq), followed by the addition of HATU (500 mg, 1.31 mmol, 1.71 eq) to the mixture. The mixture was allowed to stir at 70 °C for 12 h. The reaction mixture was poured into cold water (20 mL) and extracted with ethyl acetate (10 mL × 3). The combined organic phase was washed with saturated brine (10 mL × 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by silica gel column chromatography (eluted with ethyl acetate: methanol=0:1 to 10:1) to afford tert-butyl 4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)isoindolin-2-yl)piperidine-1-carboxylate (410 mg, 766.9 mmol, >98% yield) as a yellow solid. MS (ESI) m/z: 479.2 [M-tBu+H]+. Step 9: N-(6-isopropoxy-1-oxo-2-(piperidin-4-yl)isoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000072_0001
To a solution of tert-butyl 4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidine-1-carboxylate (410 mg, 766.9 mmol, 1 eq) in methanol (4 mL) was added a solution of hydrogen chloride in methanol (4 M, 8.0 mL, 41.7 eq). The mixture was stirred at 25 °C for 12 h. The reaction mixture was concentrated under reduced pressure, and the remaining residue was dissolved in 50 mL of methanol. The pH of the solution was then adjusted to 7-8 with the addition of a saturated aqueous solution of sodium bicarbonate solution. The mixture was then concentrated under reduced pressure to remove methanol, and the resulting residue was dissolved in ethanol (20 mL), filtered, and the filtrate was concentrated under reduced pressure to afford crude N-(6-isopropoxy-1-oxo- 2-(piperidin-4-yl)isoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (330 mg, 759.5 mmol, 99% yield) as a yellow solid which used in a subsequent transformation without further purification. MS (ESI) m/z: 435.3 [M+H]+. Scheme D. Synthetic sequence for preparation of N-(2-isopropoxy-7-oxo-6-(piperidin-4-yl)- 6,7-dihydro-5H-pyrrolo[3,4-b]pyridin-3-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (INT-4), an example of generic intermediate INT-VII in Scheme 2.
Figure imgf000073_0001
Synthesis of example INT-4. Step 1: methyl 3-methyl-5-nitropicolinate
Figure imgf000073_0002
To a solution of methyl 3-methylpicolinate (6.5 g, 43.0 mmol, 1 eq) and tetrabutylammonium nitrate (14.40 g, 47.30 mmol, 1.1 eq) in DCM (100 mL) was added trifluoroacetic anhydride (19.87 g, 94.60 mmol, 13.16 mL, 2.2 eq) at 0 °C and stirred at 25 °C for 12 h. The reaction mixture was quenched with water (100 mL), adjusted to pH =8 with a saturated solution of sodium carbonate at 0 °C, and extracted with dichloromethane (80 mL × 3). The combined organic layers were washed with brine (80 mL × 2), dried over anhydrous sodium sulfate, filtered and concentrated to give a residue. The residue was purified by silica gel chromatography (petroleum ether/ethyl acetate=5/1 to 3/1) to afford methyl 3-methyl-5-nitropicolinate (7.2 g, 36.70 mmol, 85% yield) as a light yellow solid. MS (ESI) m/z: 197.1 [M+H]+. Step 2: 2-(methoxycarbonyl)-3-methyl-5-nitropyridine 1-oxide
Figure imgf000073_0003
To a solution of methyl 3-methyl-5-nitropicolinate (7.2 g, 36.70 mmol, 1 eq) in DCM (80 mL) was added m-chloroperbenzoic acid (11.18 g, 55.06 mmol, 85% purity, 1.5 eq) at 0 °C and stirred at 50 °C for 12 h. The reaction mixture was quenched with water (60 mL), the pH was adjusted to 8 with a saturated aqueous solution of sodium bicarbonate at 0 °C, and extracted with dichloromethane (80 mL × 4). The combined organic layers were washed with brine (30 mL x 2), dried over anhydrous sodium sulfate, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether/ethyl acetate=5/1 to 1/1) to afford 2-(methoxycarbonyl)-3-methyl-5-nitropyridine 1- oxide (4 g, 18.85 mmol, 51% yield) as a light yellow solid. MS (ESI) m/z: 213.0 [M+H] +.1H NMR (400 MHz, CDCl3) δ= 8.89 (d, J=1.2 Hz, 1 H) 7.87 - 7.93 (m, 1 H) 4.06 (s, 3 H) 2.43 (s, 3 H). Step 3: methyl 6-hydroxy-3-methyl-5-nitropicolinate
Figure imgf000074_0001
To a solution of 2-(methoxycarbonyl)-3-methyl-5-nitropyridine 1-oxide (4 g, 18.85 mmol, 1 eq) in N,N-dimethylformamide (40 mL) was added trifluoroacetic anhydride (31.68 g, 150.83 mmol, 20.98 mL, 8 eq) at 0 °C and stirred at 50 °C for 12 h. The mixture was poured into ice-water (80 mL). The aqueous phase was extracted with ethyl acetate (80 mL × 6). The combined organic phase was washed with brine (30 mL × 2), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum. The crude product was triturated with petroleum ether (100 mL) at 25 °C for 0.5 h. Methyl 6-hydroxy-3-methyl-5-nitropicolinate (2.5 g, 11.78 mmol, 62% yield) was obtained as a yellow solid. MS (ESI) m/z: 213.0 [M+H] +. 1H NMR (400 MHz, DMSO-d6) δ = 12.80 (s, 1 H) 8.40 (s, 1 H) 3.88 (s, 3 H) 2.30 (s, 3 H). Step 4: methyl 6-isopropoxy-3-methyl-5-nitropicolinate
Figure imgf000074_0002
To a solution of methyl 6-hydroxy-3-methyl-5-nitropicolinate (0.9 g, 4.24 mmol, 1 eq) and 2-iodopropane (1.44 g, 8.48 mmol, 848.38 μL, 2 eq) in DMF (10 mL) was drop-wise added silver carbonate (1.75 g, 6.36 mmol, 288.59 μL, 1.5 eq). The mixture was allowed to stir at 70 °C for 12 h. The mixture was poured into ice-water (30 mL). The aqueous phase was extracted with ethyl acetate (30 mL × 3). The combined organic phase was washed with brine (20 mL × 2), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum. The residue was purified by silica gel column chromatography (petroleum ether/ethyl acetate=5/1) to afford methyl 6-isopropoxy-3-methyl-5-nitropicolinate (0.7 g, 2.75 mmol, 64% yield) as a light yellow solid.1H NMR (400 MHz, CDCl3) δ: 8.08 (s, 1 H) 5.51 (m, 1 H) 3.97 (s, 3 H) 2.49 (s, 3 H) 1.41 (d, J=6.0 Hz, 6 H). Step 5: methyl 3-(bromomethyl)-6-isopropoxy-5-nitropicolinate
Figure imgf000075_0001
To a solution of methyl 6-isopropoxy-3-methyl-5-nitropicolinate (1.3 g, 5.11 mmol, 1 eq) and NBS (910.1 mg, 5.11 mmol, 1 eq) in carbon tetrachloride (10 mL) was added azobisisobutyronitrile (71.37 mg, 434.63 μmol, 0.085 eq). The mixture was allowed to stir at 80 °C for 12 h. The mixture was concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether/ethyl acetate=50/1 to 20/1) to afford methyl 3-(bromomethyl)-6-isopropoxy-5-nitropicolinate (0.8 g, 2.40 mmol, 46% yield) as a light yellow solid. Step 6: tert-butyl 4-(2-isopropoxy-3-nitro-7-oxo-5H-pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine- 1-carboxylate
Figure imgf000075_0002
To a solution of tert-butyl 4-aminopiperidine-1-carboxylate (1.44 g, 7.20 mmol, 3 eq) and N,N-diisopropylethylamine (1.55 g, 12.01 mmol, 2.09 mL, 5 eq) in THF (10 mL) was added dropwise a solution of methyl 3-(bromomethyl)-6-isopropoxy-5-nitropicolinate (0.8 g, 2.40 mmol, 1 eq) in tetrahydrofuran (5 mL) at 40 °C. The mixture was then stirred at 60 °C for 12 h. The mixture was concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether/ethyl acetate=20/1 to 2/1) to afford tert-butyl 4- (2-isopropoxy-3-nitro-7-oxo-5H-pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine-1-carboxylate (0.55 g, 1.31 mmol, 54% yield) as a light yellow solid. MS (ESI) m/z: 365.1 [M-OtBu] +. Step 7: tert-butyl 4-(3-amino-2-isopropoxy-7-oxo-5H-pyrrolo[3,4-b]pyridin-6(7H)- yl)piperidine-1-carboxylate
Figure imgf000075_0003
To a solution of tert-butyl 4-(2-isopropoxy-3-nitro-7-oxo-5H-pyrrolo[3,4-b]pyridin- 6(7H)-yl)piperidine-1-carboxylate (0.5 g, 1.19 mmol, 1 eq) in trifluoroethanol (10 mL) was added palladium on carbon (10%, 500 mg) under a nitrogen atmosphere. The suspension was degassed and purged with hydrogen 3 times. The mixture was stirred under hydrogen (15 psi) at 25 °C for 2 h. The reaction mixture was filtered and washed with ethanol (20 mL × 2). The collected filtrate was concentrated to give tert-butyl 4-(3-amino-2-isopropoxy-7-oxo- 5H-pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine-1-carboxylate (0.4 g, 1.02 mmol, 86% yield) as a light yellow solid which was used without further purification. MS (ESI) m/z: 391.2 [M+H]+. Step 8: tert-butyl 4-(2-isopropoxy-7-oxo-3-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)-5H- pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine-1-carboxylate
Figure imgf000076_0001
To a solution of tert-butyl 4-(3-amino-2-isopropoxy-7-oxo-5H-pyrrolo[3,4-b]pyridin- 6(7H)-yl)piperidine-1-carboxylate (370 mg, 947.56 μmol, 1 eq) and pyrazolo[1,5- a]pyrimidine-3-carboxylic acid (463.74 mg, 2.84 mmol, 3 eq) in pyridine (10 mL) was added 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (908.25 mg, 4.74 mmol, 5 eq). The mixture was stirred at 70 °C for 12 h. The mixture was concentrated to give a residue. The residue was purified by preparative TLC (petroleum ether/ethyl acetate =0/1) to afford tert-butyl 4-(2-isopropoxy-7-oxo-3-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)-5H-pyrrolo[3,4- b]pyridin-6(7H)-yl)piperidine-1-carboxylate (0.27 g, 504.11 μmol, 53% yield) as a yellow solid. MS (ESI) m/z: 536.3 [M+H] +. Step 9: N-(2-isopropoxy-7-oxo-6-(piperidin-4-yl)-6,7-dihydro-5H-pyrrolo[3,4-b]pyridin-3- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000076_0002
To a solution of tert-butyl 4-(2-isopropoxy-7-oxo-3-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-5H-pyrrolo[3,4-b]pyridin-6(7H)-yl)piperidine-1-carboxylate (0.25 g, 466.77 μmol, 1 eq) in DCM (3 mL) was added a solution of hydrochloric acid in methanol (4 M, 10 mL). The mixture was stirred at 25 °C for 0.5 h. The mixture was concentrated to give a residue. The residue was diluted with dichloromethane/methyl alcohol =10/1 (30 mL), then the pH was adjusted to 8 with ammonium hydroxide (33%) at 0 °C, dried over anhydrous sodium sulfate, filtered and concentrated to give N-(2-isopropoxy-7-oxo-6-(piperidin-4-yl)- 6,7-dihydro-5H-pyrrolo[3,4-b]pyridin-3-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (0.2 g, 459.27 μmol, 98% yield) as a yellow solid which was used without further purification. MS (ESI) m/z: 436.2 [M+H]+. Scheme E. Synthetic sequence for preparation of N-(6-(cyclopropylmethoxy)-2-(piperidin-4- yl)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (INT-5), an example of generic intermediate INT-VI in Scheme 2.
Figure imgf000077_0002
Synthesis of example INT-5. Step 1: 2-fluoro-4-hydroxy-5-nitrobenzaldehyde
Figure imgf000077_0003
To a solution of 2-fluoro-4-hydroxybenzaldehyde (10.0 g, 71.4 mmol, 1 eq) in sulfuric acid (60 mL) cooled to -15 °C was slowly added a mixture of nitric acid (6 mL) and sulfuric acid (14 mL). The mixture was stirred at -15 °C for 1 h then it was poured into water (500 mL) at 0 °C and extracted with ethyl acetate (200 mL × 3). The combined organic layers were washed with brine (200 mL × 3), dried over anhydrous sodium sulfate, concentrated in vacuo to give a residue. The crude product 2-fluoro-4-hydroxy-5-nitrobenzaldehyde (13.2 g, 71.3 mmol, >98% yield) was obtained as a yellow solid and used in subsequent transformations without further purification. Step 2: 4-(cyclopropylmethoxy)-2-fluoro-5-nitrobenzaldehyde
Figure imgf000077_0001
To a solution of 2-fluoro-4-hydroxy-5-nitrobenzaldehyde (15.0 g, 81.03 mmol, 1 eq) in N,N-dimethylformamide (100 mL) was added potassium carbonate (34 g, 246.0 mmol, 3.04 eq) and (bromomethyl)cyclopropane (15 g, 111.1 mmol, 10.64 mL, 1.37 eq). The mixture was stirred at 60 °C for 12 h. The reaction mixture was poured into water (300 mL) at 0 °C, and then extracted with ethyl acetate (200 mL × 3). The combined organic layers were washed with brine (200 mL × 3), dried over anhydrous sodium sulfate, concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (eluted with petroleum ether/ethyl acetate = 20:1 to 3:1) to afford 4-(cyclopropylmethoxy)-2- fluoro-5-nitrobenzaldehyde (6.5 g, 27.17 mmol, 34% yield) as a yellow solid. MS (ESI) m/z: 240.1 [M+H]+. Step 3: 2-azido-4-(cyclopropylmethoxy)-5-nitrobenzaldehyde
Figure imgf000078_0001
To a solution of 4-(cyclopropylmethoxy)-2-fluoro-5-nitrobenzaldehyde (6.5 g, 27.2 mmol, 1 eq) in dimethyl sulfoxide (40 mL) was added sodium azide (3.6 g, 55.4 mmol, 2.04 eq). The mixture was stirred at 25 °C for 12 h. The reaction mixture was poured into water (50 mL) at 0 °C, and then extracted with ethyl acetate (30 mL × 3). The combined organic layers were washed with brine (30 mL × 3), dried over anhydrous sodium sulfate, and concentrated in vacuo to give a residue. The crude product 2-azido-4-(cyclopropylmethoxy)- 5-nitrobenzaldehyde (7 g, 26.70 mmol, 98% yield) obtained as a yellow oil was used in the next step without further purification. MS (ESI) m/z: 263.1 [M+H]+. Step 4: tert-butyl 4-(6-(cyclopropylmethoxy)-5-nitro-2H-indazol-2-yl)piperidine-1-carboxylate
Figure imgf000078_0002
To a solution of 2-azido-4-(cyclopropylmethoxy)-5-nitrobenzaldehyde (7.0 g, 26.7 mmol, 1 eq) in toluene (70 mL) was added tert-butyl 4-aminopiperidine-1-carboxylate (5.5 g, 27.5 mmol, 1.03 eq). The mixture was stirred at 120 °C for 12 h. The reaction mixture was concentrated under reduced pressure. The residue was purified by column chromatography (silicon dioxide, eluted with petroleum ether/ethyl acetate = 10:1 to 0.5:1) to afford tert-butyl 4-(6-(cyclopropylmethoxy)-5-nitro-2H-indazol-2-yl)piperidine-1-carboxylate (10.5 g, 25.21 mmol, 94% yield) as a yellow solid. MS (ESI) m/z: 417.2 [M+H]+. Step 5: tert-butyl 4-(5-amino-6-(cyclopropylmethoxy)-2H-indazol-2-yl)piperidine-1- carboxylate
Figure imgf000079_0001
To a solution of tert-butyl 4-(6-(cyclopropylmethoxy)-5-nitro-2H-indazol-2- yl)piperidine-1-carboxylate (10.5 g, 25.2 mmol, 1 eq) in methanol (150 mL) was added palladium on carbon (11.00 g, 10.34 mmol, 10% purity, 0.41 eq) under nitrogen atmosphere. The suspension was degassed under vacuum and purged with hydrogen several times. The mixture was stirred under hydrogen (15 psi) at 25 °C for 12 h. The reaction mixture was filtered, and the filtrate was concentrated. The residue was purified by preparative HPLC (column: Phenomenex Synergi Max-RP 250 × 80 mm × 10 mm; mobile phase: [water (10 mM ammonium hydrogen carbonate) -acetonitrile]; B%: 40%-65%, 18 min) yielding tert-butyl 4-(5-amino-6-(cyclopropylmethoxy)-2H-indazol-2-yl)piperidine-1-carboxylate (7 g, 18.1 mmol, 72% yield) as a yellow solid. MS (ESI) m/z: 387.3 [M+H]+. Step 6: tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)- 2H-indazol-2-yl)piperidine-1-carboxylate
Figure imgf000079_0002
To a solution of tert-butyl 4-(5-amino-6-(cyclopropylmethoxy)-2H-indazol-2- yl)piperidine-1-carboxylate (500 mg, 1.29 mmol, 1 eq) and pyrazolo[1,5-a]pyrimidine-3- carboxylic acid (220 mg, 1.35 mmol, 1.04 eq) in N,N-dimethylformamide (5 mL) was added diisopropylethylamine (500 mg, 3.87 mmol, 673.8 μL, 2.99 eq), followed by the addition of HATU (740 mg, 1.95 mmol, 1.5 eq) to the mixture. The mixture was stirred at 25 °C for 1 h. The reaction mixture was poured into water (500 mL) at 0 °C, and then extracted with ethyl acetate (250 mL × 3). The combined organic layers were washed with brine (250 mL × 3), dried over anhydrous sodium sulfate, concentrated in vacuo to give a residue. The residue was purified by silica gel column chromatography (eluted with petroleum ether/ethyl acetate=4:1 to 1:4) to afford tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)-2H-indazol-2-yl)piperidine-1-carboxylate (300 mg, 564.33 µmol, 44% yield) as a yellow solid. MS (ESI) m/z: 532.5 [M+H]+. Step 7: N-(6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000080_0001
To a solution of tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)piperidine-1-carboxylate (300 mg, 564.33 mmol, 1 eq) in dioxane (2 mL) was added a solution of hydrogen chloride in dioxane (4 M, 4 mL, 28.35 eq). The mixture was stirred at 25 °C for 12 h. The reaction mixture was concentrated under reduced pressure. The residue was diluted with tetrahydrofuran and the pH was adjusted to 7-8 with ammonium hydroxide. The mixture was then filtered, and the filtrate was concentrated under reduced pressure to give a residue. The crude product N-(6- (cyclopropylmethoxy)-2-(piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide (240 mg, 556.21 mmol, 99% yield) obtained as a yellow solid was used in subsequent reactions without further purification. MS (ESI) m/z: 432.3 [M+H]+. Scheme F. Synthetic sequence for preparation of N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo- 2-(piperidin-4-yl)isoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (INT-6), an example of generic intermediate INT-VII in Scheme 2.
Figure imgf000080_0002
Synthesis of example INT-6. Step 1: 4-(azetidin-1-yl)-1-benzylpiperidine
Figure imgf000081_0001
A solution of azetidine hydrochloride (10 g, 106.89 mmol, 1 eq) and acetic acid (5.25 g, 87.42 mmol, 5.00 mL, 8.18e-1 eq) in methanol (50 mL) and DCM (50 mL) was added 1- benzylpiperidin-4-one (20.23 g, 106.89 mmol, 19.83 mL, 1 eq) was allowed to stir for 1 h. Sodium cyanoborohydride (13.00 g, 206.87 mmol, 1.94 eq) was then added and the mixture was stirred at 25 °C for 11 h. The reaction mixture was quenched by addition water 100 mL at 0 °C, and then diluted with ethyl acetate (300 mL) and extracted with ethyl acetate (100 mL × 3). The combined organic layers were washed with brine (100 mL × 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (petroleum ether:ethyl acetate=10/1 to 0/1 and then DCM:Methanol=10:1 to 5/1) and further purified by preparative HPLC to afford 4-(azetidin-1-yl)-1-benzylpiperidine (20 g, 86.83 mmol, 81% yield) as a colorless oil. MS (ESI) m/z: 231.2 [M+H]+. Step 2: 4-(azetidin-1-yl)piperidine
Figure imgf000081_0002
To a solution of 4-(azetidin-1-yl)-1-benzylpiperidine (5.5 g, 23.88 mmol, 1 eq) in trifluoroethanol (100 mL) was added palladium on carbon (400 mg, 10% purity) and palladium hydroxide (550.0 mg, 391.64 μmol, 10% purity, 1.64e-2 eq). The mixture was stirred under hydrogen (15 psi) at 25 °C for 12 h. The reaction mixture was and concentrated under reduced pressure to afford 4-(azetidin-1-yl)piperidine (3.3 g, 23.53 mmol, 98% yield) as a colorless oil. Step 3: tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-1-oxoisoindolin-2-yl)piperidine- 1-carboxylate
Figure imgf000082_0001
To a solution of tert-butyl 4-(6-chloro-5-nitro-1-oxoisoindolin-2-yl)piperidine-1- carboxylate (1.1 g, 2.78 mmol, 1 eq), 4-(azetidin-1-yl)piperidine (779.35 mg, 5.56 mmol, 2 eq) in DMSO (1 mL) was added diisopropylethylamine (1.08 g, 8.34 mmol, 1.45 mL, 3 eq). The mixture was stirred at 100 °C for 12 h. The reaction mixture was quenched by addition water 10 mL at 0 °C, and then diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (10 mL × 3). The combined organic layers were washed with brine (10 mL × 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (dichloromethane:methanol = 10:1) to afford tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-1-oxoisoindolin-2- yl)piperidine-1-carboxylate (750 mg, 1.50 mmol, 54% yield) as a brown oil. MS (ESI) m/z: 500.5 [M+H]+. Step 4: tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxoisoindolin-2- yl)piperidine-1-carboxylate
Figure imgf000082_0002
To a solution of tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-1-oxoisoindolin- 2-yl)piperidine-1-carboxylate (750 mg, 1.50 mmol, 1 eq) in ethanol (3 mL) was added ammonium chloride (1.20 g, 22.52 mmol, 15 eq) and zinc powder (1.47 g, 22.52 mmol, 15 eq). The mixture was stirred at 50 °C for 12 h. The reaction mixture was filtered and concentrated under reduced pressure to give a residue. Then the reaction mixture was quenched by addition of an aqueous solution of sodium bicarbonate (10 mL) at 0 °C, and then diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (10 mL × 3). The combined organic layers were washed with brine (10 mL × 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by preparative TLC (dichloromethane: methanol = 6:1) to afford tert-butyl 4-(5- amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxoisoindolin-2-yl)piperidine-1-carboxylate (550 mg, 1.17 mmol, 78% yield) as a yellow solid. MS (ESI) m/z: 470.1 [M+H]+. Step 5: tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidine-1-carboxylate
Figure imgf000083_0001
To a solution of tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-1- oxoisoindolin-2-yl)piperidine-1-carboxylate (200 mg, 425.88 μmol, 1 eq), pyrazolo[1,5- a]pyrimidine-3-carboxylic acid (138.95 mg, 851.76 μmol, 2 eq) in pyridine (4 mL) was added 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (326.57 mg, 1.70 mmol, 4 eq). The mixture was stirred at 50 °C for 0.5 h. The reaction mixture was quenched by addition of water (10 mL) at 0 °C, and then diluted with dichloromethane (30 mL) and extracted with dichloromethane (10 mL × 3). The combined organic layers were washed with brine (10 mL × 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by preparativeTLC (dichloromethane: methanol = 6:1) to afford tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)isoindolin-2-yl)piperidine-1-carboxylate (170 mg, 276.54 μmol, 64% yield) as a light yellow solid. MS (ESI) m/z: 615.2 [M+H]+. Step 6: N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-2-(piperidin-4-yl)isoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000083_0002
To a solution of tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)isoindolin-2-yl)piperidine-1-carboxylate (170 mg, 276.54 μmol, 1 eq) in dichloromethane (2 mL) was added trifluoroacetic acid (6.55 g, 57.40 mmol, 4.25 mL, 207.57 eq). The mixture was stirred at 25 °C for 0.5 h. The mixture was concentrated in vacuo, then the reaction was diluted with dichloromethane (10 mL), and ammonium hydroxide was added until the pH reached between 7-8. The mixture was then dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to afford N-(6- (4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-2-(piperidin-4-yl)isoindolin-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide (140 mg, 272.05 μmol, 98% yield) as a yellow oil. Synthetic sequence for preparation of N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-2-(piperidin-4-yl)- 2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide, an example of generic intermediate INT-IX in Scheme 2. Synthesis of example INT-7. Step 1: 2-azido-4-hydroxy-5-nitrobenzaldehyde
Figure imgf000084_0001
To a solution of 2-fluoro-4-hydroxy-5-nitrobenzaldehyde (2 g, 10.80 mmol, 1 eq) in DMSO (130 mL) was added sodium azide (1.05 g, 16.21 mmol, 1.5 eq). The mixture was stirred at 25 °C for 0.5 h. The reaction mixture was partitioned between ethyl acetate (100 mL) and water (100 mL). The organic phase was separated, washed with brine (50 mL × 2), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give 2-azido-4-hydroxy-5-nitrobenzaldehyde (2.2 g, 10.57 mmol, 98% yield) as a yellow solid.1H NMR (400 MHz, CDCl3) δ = 11.12 (br s, 1H), 10.18 (s, 1H), 8.69 (s, 1H), 6.97 (s, 1H). Step 2: tert-butyl 4-(6-hydroxy-5-nitro-2H-indazol-2-yl)piperidine-1-carboxylate
Figure imgf000084_0002
To a solution of 2-azido-4-hydroxy-5-nitrobenzaldehyde (1.1 g, 5.29 mmol, 1 eq) in toluene (30 mL) was added tert-butyl 4-aminopiperidine-1-carboxylate (1.06 g, 5.29 mmol, 1 eq). The mixture was stirred at 120 °C for 12 h. The reaction mixture was concentrated under reduced pressure. The residue was diluted with water 100 mL and extracted with ethyl acetate (100 mL × 3). The combined organic layers were washed with brine (50 mL × 2), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (petroleum ether / ethyl acetate = 10:1 to 1:1) to give tert-butyl 4-(6-hydroxy-5-nitro-2H-indazol-2-yl)piperidine-1- carboxylate (0.6 g, 1.66 mmol, 31% yield) as a yellow solid. MS (ESI) m/z: 363.1 [M+H]+. Step 3: tert-butyl 4-(5-nitro-6-(((trifluoromethyl)sulfonyl)oxy)-2H-indazol-2-yl)piperidine-1- carboxylate
Figure imgf000085_0001
To a solution of tert-butyl 4-(6-hydroxy-5-nitro-2H-indazol-2-yl)piperidine-1- carboxylate (1 g, 2.76 mmol, 1 eq) in DCM (20 mL) was added pyridine (1.31 g, 16.56 mmol, 1.34 mL, 6 eq) and trifluoromethanesulfonic anhydride (2.34 g, 8.28 mmol, 1.37 mL, 3 eq). The mixture was stirred at 25 °C for 1 h. The reaction mixture was concentrated in vacuo to give the crude product. The residue was purified by column chromatography (petroleum ether/ethyl acetate=10/1 to 1/1) to give tert-butyl 4-(5-nitro-6-(((trifluoromethyl)sulfonyl)oxy)- 2H-indazol-2-yl)piperidine-1-carboxylate (1.3 g, 2.63 mmol, 95.3% yield) as a white solid. MS (ESI) m/z: 439.0 [M-OtBu] + Step 4: tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-2H-indazol-2-yl)piperidine-1-car boxylate
Figure imgf000085_0002
To a solution of tert-butyl 4-(5-nitro-6-(((perfluorobutyl)sulfonyl)oxy)-2H-indazol-2- yl)piperidine-1-carboxylate (14 g, 21.72 mmol, 1 eq) and 4-(azetidin-1-yl)piperidine (8 g, 57.05 mmol, 2.63 eq) in dioxane (150 mL) was added cesium carbonate (14.16 g, 43.45 mmol, 2 eq) and SPhos Pd G3 (1.4 g, 1.79 mmol, 8.26e-2 eq) under nitrogen atmosphere. The suspension was degassed and purged with nitrogen for 3 times. The mixture was stirred under nitrogen at 90 °C for 12 h. The reaction mixture was filtered and washed with dichloromethane (20 mL x 3). The collected filtrate was concentrated to give a residue. The residue was purified by silica gel column chromatography (dichloromethane /methyl alcohol=10/1) to give tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-2H-indazol-2- yl)piperidine-1-carboxylate (6 g, 12.38 mmol, 57% yield) as a black brown solid. MS (ESI) m/z: 485.2 [M+H]+.1H NMR (400 MHz, CDCl3)δ: 8.10 (s, 1 H) 8.03 (s, 1 H) 7.23 (s, 1 H) 4.51 (tt, J=11.2, 3.6 Hz, 1 H) 4.31 (br s, 2 H) 3.22 (br t, J=6.8 Hz, 6 H) 2.84 - 3.02 (m, 3 H) 2.72 (br t, J=10.4 Hz, 2 H) 2.21 (br d, J=12.4 Hz, 2 H) 2.11 - 2.17 (m, 1 H) 2.04 - 2.09 (m, 3 H) 1.77 (br d, J=10.4 Hz, 2 H) 1.49 - 1.55 (m, 2 H) 1.47 (s, 9 H). Step 5: tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-2H-indazol-2-yl)piperidine-1- carboxylate
Figure imgf000086_0001
To a solution of tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-nitro-2H-indazol-2- yl)piperidine-1-carboxylate (1 g, 2.06 mmol, 1 eq) in trifluoroethanol (15 mL) was added palladium on carbon (10%, 0.5 g) under a nitrogen atmosphere. The suspension was degassed and purged with hydrogen 3 times. The mixture was stirred under hydrogen (15 psi) at 25 °C for 2 h. The reaction mixture was filtered and washed with a 5:1 solution of dichloromethane\methyl alcohol (30 mL x 3). The collected filtrate was concentrated to give tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-2H-indazol-2-yl)piperidine-1- carboxylate (0.9 g, 1.98 mmol, 95% yield) obtained as a black brown solid which was used without further purification. MS (ESI) m/z: 455.3 [M+H]+. Step 6: tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxa mido)-2H-indazol-2-yl)piperidine-1-carboxylate
Figure imgf000086_0002
To a solution of pyrazolo[1,5-a]pyrimidine-3-carboxylic acid (322.96 mg, 1.98 mmol, 1 eq) in pyridine (10 mL) was added tert-butyl 4-(5-amino-6-(4-(azetidin-1-yl)piperidin-1-yl)-2H- indazol-2-yl)piperidine-1-carboxylate (0.9 g, 1.98 mmol, 1 eq) and 1-(3- dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (1.14 g, 5.94 mmol, 3 eq). The mixture was stirred at 25 °C for 12 h. The reaction mixture was concentrated to give a residue which was purified by silica gel column chromatography (dichloromethane /methyl alcohol=10/1) to give tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)-2H-indazol-2-yl)piperidine-1-carboxylate (1 g, 1.67 mmol, 84% yield) as a black brown solid. MS (ESI) m/z: 600.2 [M+H]+. Step 7: N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-2-(piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5-a] pyrimidine-3-carboxamide
Figure imgf000087_0001
To a solution of tert-butyl 4-(6-(4-(azetidin-1-yl)piperidin-1-yl)-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)-2H-indazol-2-yl)piperidine-1-carboxylate (0.2 g, 333.49 μmol, 1 eq) in dichloromethane (6 mL) was added trifluoroacetic acid (9.24 g, 81.04 mmol, 6.00 mL, 243.0 eq). The mixture was stirred at 25 °C for 0.5 hr. The reaction mixture was concentrated to give N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-2-(piperidin-4-yl)-2H-indazol-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (0.2 g, crude, trifluoroacetate) as a brown oil. MS (ESI) m/z: 500.4 [M+H]+. Example 10: N-[2-[1-[[7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonan-2- yl]methyl]-4-piperidyl]-6-isopropoxy-1-oxo-isoindolin-5-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide Step 1: 7-azaspiro[3.5]nonan-2-ylmethanol
Figure imgf000087_0002
To a solution of tert-butyl 2-(hydroxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate (2.5 g, 9.8 mmol) in dichloromethane (10 mL) was added trifluoroacetic acid (2.23 g, 19.6 mmol, 1.45 mL). The reaction mixture was stirred at 25 °C for 0.5 h, then concentrated under reduced pressure to afford 7-azaspiro[3.5]nonan-2-ylmethanol trifluoroacetic acid (2.6 g, crude) as yellow oil, which was used in the next step without further purification. Step 2: benzyl 2-(hydroxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate
Figure imgf000087_0003
To a solution of 7-azaspiro[3.5]nonan-2-ylmethanol (2.6 g, 16.8 mmol) and sodium carbonate (5.33 g, 50.3 mmol) in tetrahydrofuran (25 mL) and water (25 mL) was added p- toluenesulfonyl chloride (3.14 g, 18.4 mmol) at 0 °C. The reaction mixture was stirred at 25 °C for 12 h, then quenched by water (10 mL). Diluted with water (30 mL) and extracted with ethyl acetate (3 x 30 mL). The combined organic layers were washed with brine (2 x 30 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by silica gel chromatography eluting with a gradient from 0 to 50% ethyl acetate in petroleum ether gradient to afford benzyl 2-(hydroxymethyl)-7- azaspiro[3.5]nonane-7-carboxylate (2.6 g, 53%) as colorless oil. MS (ESI) m/z: 290.1 [M+H]+; 1H NMR (400 MHz, CDCl3) δ = 7.41 - 7.29 (m, 5H), 5.12 (s, 2H), 3.61 (d, J = 6.4 Hz, 2H), 3.49 - 3.41 (m, 2H), 3.39 - 3.32 (m, 2H), 2.64 - 2.38 (m, 1H), 1.97 - 1.83 (m, 2H), 1.65 - 1.43 (m, 8H). Step 3: benzyl 2-formyl-7-azaspiro[3.5]nonane-7-carboxylate
Figure imgf000088_0001
To a solution of benzyl 2-(hydroxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate (2.6 g, 9.0 mmol) in dichloromethane (30 mL) was added Dess-Martin periodinane (7.62 g, 18.0 mmol, 5.56 mL) and sodium bicarbonate (4.53 g, 53.9 mmol). The reaction mixture was stirred at 25 °C for 1 h, then filtered and concentrated under reduced pressure. The residue was purified by column chromatography (petroleum ether: ethyl acetate = 10: 1 to 1: 1) to afford benzyl 2-formyl-7-azaspiro[3.5]nonane-7-carboxylate (1.77 g, 68%) as a colorless oil. 1H NMR (400 MHz, CDCl3) = 9.76 (s, 1H), 7.44 - 7.28 (m, 5H), 5.13 (s, 2H), 3.49 - 3.42 (m, 2H), 3.41 - 3.35 (m, 2H), 3.23 - 3.11 (m, 1H), 2.15 - 1.96 (m, 5H), 1.64 (s, 2H). Step 4: benzyl 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate
Figure imgf000088_0002
To a solution of benzyl 2-formyl-7-azaspiro[3.5]nonane-7-carboxylate (1.77 g, 6.2 mmol) and p-toluene sulfonic acid (1.17 g, 6.2 mmol) in methanol (20 mL) was added trimethoxymethane (1.31 g, 12.3 mmol). The reaction mixture was stirred at 25 °C for 12 h, then quenched by sodium bicarbonate (50 mL), diluted with water (20 mL) and extracted with ethyl acetate (3 x 30 mL). The combined organic layers were washed with brine (3 x 30 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography (petroleum ether: ethyl acetate = 10: 1 to 1: 1) to afford benzyl 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane-7- carboxylate (1.7 g, 82%) as colorless oil. MS (ESI) m/z: 334.0 [M+H]+; 1H NMR (400 MHz, CDCl3) δ = 7.50 - 7.28 (m, 5H), 5.12 (s, 2H), 4.29 (d, J = 6.8 Hz, 1H), 3.57 - 3.23 (m, 11H), 2.69 - 2.51 (m, 1H), 1.88 (t, J = 10.0 Hz, 2H), 1.74 - 1.56 (m, 5H). Step 5: 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane
Figure imgf000089_0001
To a solution of benzyl 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane-7-carboxylate (1.7 g, 5.1 mmol) in trifluoroethanol (20 mL) was added 10% palladium on carbon (500 mg). The reaction mixture was stirred at 25 °C for 2 h with hydrogen (15 psi). The reaction mixture was filtered and concentrated under reduced pressure to afford 2- (dimethoxymethyl)-7-azaspiro[3.5]nonane (1 g, crude) as a colorless oil. Step 6: 7-[4-(2,6-dibenzyloxy-3-pyridyl)-3-fluoro-phenyl]-2-(dimethoxymethyl)-7- azaspiro[3.5]nonane
Figure imgf000089_0002
To a solution of 2,6-dibenzyloxy-3-(4-bromo-2-fluoro-phenyl)pyridine (500 mg, 1.1 mmol) and 2-(dimethoxymethyl)-7-azaspiro[3.5]nonane (322 mg, 1.6 mmol) in dioxane (20 mL) was added tris(dibenzylideneacetone)dipalladium(0) (49 mg, 0.05 mmol), dicyclohexyl- [2-[2,6-di(propan-2-yloxy)phenyl]phenyl]phosphane (101 mg, 0.2 mmol) and sodium tert- butoxide (2 M, 1.6 mL). The reaction mixture was stirred at 110 °C for 2 h. The reaction was quenched by water (20 mL), diluted with water (30 mL) and extracted with ethyl acetate (3 x 30 mL). The combined organic layers were washed with brine (3 x 40 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by silica gel chromatography with a gradient of ethyl acetate:petroleum ether to afford 7-[4-(2,6-dibenzyloxy-3-pyridyl)-3-fluoro-phenyl]-2-(dimethoxymethyl)-7- azaspiro[3.5]nonane (500 mg, 79%) as yellow oil. MS (ESI) m/z: 583.3 [M+H]+; 1H NMR (400 MHz, CDCl3) δ = 7.52 (dd, J = 1.2, 8.0 Hz, 1H), 7.47 - 7.41 (m, 2H), 7.40 - 7.29 (m, 7H), 7.27 - 7.18 (m, 2H), 6.78 - 6.61 (m, 2H), 6.44 (d, J = 8.0 Hz, 1H), 5.40 (s, 2H), 5.34 (s, 2H), 4.33 (d, J = 7.2 Hz, 1H), 3.34 (s, 6H), 3.23 - 3.16 (m, 2H), 3.14 - 3.07 (m, 2H), 2.70 - 2.53 (m, 1H), 1.98 - 1.87 (m, 2H), 1.81 - 1.63 (m, 6H). Step 7: 3-[4-[2-(dimethoxymethyl)-7-azaspiro[3.5]nonan-7-yl]-2-fluoro-phenyl]piperidine-2,6- dione
Figure imgf000090_0001
To a solution of 7-[4-(2,6-dibenzyloxy-3-pyridyl)-3-fluoro-phenyl]-2- (dimethoxymethyl)-7-azaspiro[3.5]nonane (540 mg, 0.9 mmol) in trifluoroethanol (10 mL) was added 10% palladium on carbon (200 mg). The reaction mixture was stirred at 25 °C with hydrogen (15 psi) for 1 h. The reaction mixture was filtered and concentrated under reduced pressure to afford 3-[4-[2-(dimethoxymethyl)-7-azaspiro[3.5]nonan-7-yl]-2-fluoro- phenyl]piperidine-2,6-dione (330 mg, 88%) as a blue solid. MS (ESI) m/z: 405.2 [M+H]+. Step 8: 7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonane-2-carbaldehyde
Figure imgf000090_0002
To a stirred solution of 3-[4-[2-(dimethoxymethyl)-7-azaspiro[3.5]nonan-7-yl]-2-fluoro- phenyl]piperidine-2,6-dione (200 mg, 0.5 mmol) in dichloromethane (2 mL) was added trifluoroacetic acid (56 mg, 0.5 mmol). The reaction mixture was stirred at 25 °C for 0.15 h, then concentrated under reduced pressure to afford 7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro- phenyl]-7-azaspiro[3.5]nonane-2-carbaldehyde (180 mg, crude) as a yellow oil, which was used in the next step without further purification. MS (ESI) m/z: 359.0 [M+H]+. Step 9: N-[2-[1-[[7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonan-2- yl]methyl]-4-piperidyl]-6-isopropoxy-1-oxo-isoindolin-5-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000090_0003
To a solution of 7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro-phenyl]-7-azaspiro[3.5]nonane-2- carbaldehyde (90 mg, 0.3 mmol) and N-methylmorpholine (127 mg, 1.3 mmol) in dichloromethane (2 mL) and dimethyl sulfoxide (2 mL) was added N-[6-isopropoxy-1-oxo-2- (4-piperidyl)isoindolin-5-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide hydrochloride (118 mg, 0.3 mmol). After 2 h, sodium triacetoxyborohydride (266 mg, 1.3 mmol) was added. The reaction mixture was stirred at 25 °C for 10 h. The reaction was quenched by water (10 mL), diluted with water (30 mL) and extracted with dichloromethane (3 x 30 mL). The combined organic layers were washed with brine (3 x 60 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by preparative HPLC (column: Phenomenex Synergi C18150*25mm*10μm; mobile phase: [water (formic acid)-acetonitrile]; B%: 13-43%,) to afford N-[2-[1-[[7-[4-(2,6-dioxo-3-piperidyl)-3-fluoro- phenyl]-7-azaspiro[3.5]nonan-2-yl]methyl]-4-piperidyl]-6-isopropoxy-1-oxo-isoindolin-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (74.8 mg, 38%) as a white solid. MS (ESI) m/z: 777.3 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ = 10.77 (d, J = 20.0 Hz, 2H), 9.39 (d, J = 7.2 Hz, 1H), 8.98 - 8.84 (m, 1H), 8.73 (s, 2H), 7.44 - 7.26 (m, 2H), 7.05 (t, J = 8.4 Hz, 1H), 6.82 - 6.62 (m, 2H), 4.99 - 4.78 (m, 1H), 4.40 (s, 2H), 3.97 (t, J = 11.2 Hz, 1H), 3.86 (dd, J = 4.0, 11.6 Hz, 1H), 3.14 (s, 2H), 3.05 (s, 2H), 2.92 (d, J = 10.2 Hz, 2H), 2.79 - 2.64 (m, 2H), 2.46 - 2.36 (m, 3H), 2.17 - 2.00 (m, 3H), 1.95 (d, J = 8.0 Hz, 3H), 1.84 - 1.73 (m, 2H), 1.65 (s, 4H), 1.53 (s, 2H), 1.43 (d, J = 4.8 Hz, 8H). Table 2. The following compounds may be prepared in an analogous fashion as described for the synthesis of Example 10 and as described in the general synthetic route Scheme 2.
Figure imgf000091_0001
Figure imgf000092_0001
Figure imgf000093_0001
Figure imgf000094_0001
Figure imgf000095_0001
Figure imgf000096_0001
Scheme 3.
Figure imgf000097_0001
A compound of formula INT-IX, where Y and n will be defined herein, can be readily prepared using standard reaction conditions to one skilled in the art as exemplified by the sequence described in Scheme G. A compound of formula INT-IX may be reacted with a reagent of general formula INT-VII to afford compounds of formula CMPD-X through N- alkylation where Y is an appropriate leaving group (e.g. OMs, OTs, Cl, etc.) or through reductive amination where Y is an aldehyde or ketone. When Y is a leaving group, suitable reaction conditions are those for an alkylation reaction, e.g. diisopropylethylamine, potassium iodide, DMSO or acetonitrile, 80 °C. When Y is a carbonyl, suitable reaction conditions are those for a reductive amination reaction, e.g. sodium cyanoborohydride, methanol, dichloromethane, acetic acid, room temperature. Scheme G: Synthetic sequence for the preparation of 1-(6-(2,6-dioxopiperidin-3-yl)pyridin-3- yl)piperidine-4-carbaldehyde (INT-8), an example of generic intermediate INT-IX in Scheme 3. Analogous synthetic intermediates can be prepared by commencing with alternative anilines in Step 1.
Figure imgf000097_0002
Synthesis of example INT-8. Step 1: 3-((4-bromophenyl)amino)propanoic acid
Figure imgf000098_0001
A mixture of 4-bromoaniline (10 g, 58.1 mmol), acrylic acid (4.19 g, 58.1 mmol, 3.99 mL) in acetic acid (20 mL) and water (100 mL) was stirred at 100 °C for 12 h under a nitrogen atmosphere. The mixture was filtered and concentrated under reduced pressure and then diluted with water (100 mL) at 0 °C, and ethyl acetate (100 mL) and extracted with ethyl acetate (3 x 100 mL). The combined organic layers were washed with brine (3 x 100 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography (petroleum ether/ethyl acetate=10/1 to 3/1) to afford 3-((4-bromophenyl)amino)propanoic acid (9.7 g, 68%) as a pink solid. MS (ESI) m/z: 244.0 [M+H]+.1H NMR (400 MHz, CDCl3) δ = 7.47 - 7.35 (m, 1 H), 7.29 - 7.27 (m, 1 H), 7.27 - 7.24 (m, 1 H), 6.53 - 6.51 (m, 1 H), 6.51 - 6.49 (m, 1 H), 3.43 (t, J = 6.0 Hz, 2 H), 2.66 (t, J = 6.4 Hz, 2 H). Step 2: 1-(4-bromophenyl)dihydropyrimidine-2,4(1H,3H)-dione
Figure imgf000098_0002
To a solution of 3-((4-bromophenyl)amino)propanoic acid (8 g, 32.8 mmol) in acetic acid (80 mL) was added urea (19.68 g, 327.7 mmol, 17.57 mL). The mixture was stirred at 100 °C for 12 h. The reaction mixture was quenched with water (100 mL) at 0 °C, diluted with ethyl acetate (100 mL) and extracted with ethyl acetate (3 x 100 mL). The combined organic layers were washed with brine (3 x 100 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography (eluted with a gradient of petroleum ether:ethyl acetate from 10:1 to 1:1) to afford 1-(4-bromophenyl)dihydropyrimidine-2,4(1H,3H)-dione (4.6 g, 52%) as a white solid. MS (ESI) m/z: 269.0 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 10.42 (s, 1 H), 7.62 - 7.52 (m, 2 H), 7.35 - 7.23 (m, 2 H), 3.78 (t, J = 6.4 Hz, 2 H), 2.70 (t, J = 6.8 Hz, 2 H). Step 3: 1-(4-(4-(dimethoxymethyl)piperidin-1-yl)phenyl)dihydropyrimidine-2,4(1H,3H)-dione
Figure imgf000099_0001
To a stirred solution of 1-(4-bromophenyl)dihydropyrimidine-2,4(1H,3H)-dione (0.9 g, 3.3 mmol) and 4-(dimethoxymethyl)piperidine (798.81 mg, 5.0 mmol) in dioxane (2 mL) was added [2-(2-aminophenyl)phenyl]palladium(1+);2-(2-dicyclohexylphosphanylphenyl)- N1,N1,N3,N3-tetramethyl-benzene-1,3-diamine;methanesulfonate (269.69 mg, 334.5 mmol). Under an inert atmosphere, a solution of sodium tert-butoxide (2 M, 5.02 mL) was added. The mixture was degassed and purged with nitrogen 3 times, and then the mixture was stirred at 90 °C for 12 h. The reaction mixture was quenched by water (10 mL) at 0 °C, diluted with ethyl acetate (10 mL) and extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by preparative TLC (eluted with ethyl acetate) to afford 1-(4-(4-(dimethoxymethyl)piperidin-1- yl)phenyl)dihydropyrimidine-2,4(1H,3H)-dione (0.5 g, 43%) as a white solid.1H NMR (400 MHz, CDCl3) δ = 7.54 (s, 1 H), 7.16 (d, J = 9.2 Hz, 2 H), 6.94 (d, J = 8.8 Hz, 2 H), 4.09 (d, J = 7.2 Hz, 1 H), 3.81 (t, J = 6.8 Hz, 2 H), 3.71 (d, J = 12.4 Hz, 2 H), 3.38 (s, 6 H), 2.81 (t, J = 6.4 Hz, 2 H), 2.76 - 2.63 (m, 2 H), 1.85 (d, J = 13.6 Hz, 2 H), 1.80 - 1.70 (m, 1 H), 1.45 (m, 2 H). Step 4: 1-(4-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)phenyl)piperidine-4-carbaldehyde
Figure imgf000099_0002
To a solution of 1-(4-(4-(dimethoxymethyl)piperidin-1-yl)phenyl)dihydropyrimidine- 2,4(1H,3H)-dione (0.07 g, 201.5 mmol) in dichloromethane (2 mL) was added trifluoroacetic acid (3.08 g, 27.0 mmol, 2 mL). The mixture was stirred at 25 °C for 0.5 h. The reaction was concentrated under reduced pressure to afford 1-(4-(2,4-dioxotetrahydropyrimidin-1(2H)- yl)phenyl)piperidine-4-carbaldehyde trifluoroacetic acid (60 mg, crude) as a yellow oil. MS (ESI) m/z: 302.2 [M+H]+. Example 26: N-{6-[4-(azetidin-1-yl)piperidin-1-yl]-2-[1-({1-[4-(2,4-dioxo-1,3-diazinan-1- yl)phenyl]piperidin-4-yl}methyl)piperidin-4-yl]-1-oxo-2,3-dihydro-1H-isoindol-5- yl}pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000100_0001
To a stirred solution of 1-(4-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)phenyl)piperidine- 4-carbaldehyde (35.13 mg, 116.6 mmol) and N-(6-(4-(azetidin-1-yl)piperidin-1-yl)-1-oxo-2- (piperidin-4-yl)isoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (60 mg, 116.6 mmol) in dimethylsulfoxide (1 mL) and dichloroethane (1 mL) was added 4-methylmorpholine (58.96 mg, 582.9 μmol, 64.09 mL), The mixture was stirred at 25 °C for 0.5 h, then added sodium borohydride acetate (74.13 mg, 349.8 mmol). The mixture was stirred at 25 °C for 11.5 h, quenched by water (10 mL) at 0 °C, diluted with ethyl acetate (10 mL) and extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by preparative HPLC (Phenomenex Luna C18 column 150×25mm×10mm; mobile phase: [water(formic acid)-acetonitrile]; B%: 1-30%) to afford N- (6-(4-(azetidin-1-yl)piperidin-1-yl)-2-(1-((1-(4-(2,4-dioxotetrahydropyrimidin-1(2H)- yl)phenyl)piperidin-4-yl)methyl)piperidin-4-yl)-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine- 3-carboxamide (32.5 mg, 34%) as a white solid. MS (ESI) m/z: 800.3 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ 10.98 (s, 1 H), 10.25 (s, 1 H), 9.41 (dd, J = 1.2, 6.8 Hz, 1 H), 8.93 (dd, J = 1.6, 4.4 Hz, 1 H), 8.76 (s, 1 H), 8.74 (s, 1 H), 7.54 (s, 1 H), 7.45 (dd, J = 4.4, 7.2 Hz, 1 H), 7.13 (d, J = 8.8 Hz, 2 H), 6.92 (d, J = 9.2 Hz, 2 H), 4.45 (s, 2 H), 4.06 - 3.91 (m, 1 H), 3.69 (m, 3 H), 3.17 (m, 4 H), 2.96 (m, 4 H), 2.78 - 2.70 (m, 2 H), 2.70 - 2.65 (m, 4 H), 2.25 - 2.17 (m, 3 H), 2.05 - 1.96 (m, 4 H), 1.80 (m, 6 H), 1.72 - 1.54 (m, 6 H), 1.26 - 1.17 (m, 2 H). Table 3. The following compounds may be prepared in an analogous fashion as described for the synthesis of Example 26 and as described in the general synthetic route Scheme 3.
Figure imgf000101_0001
Figure imgf000102_0003
Example 30: N-[6-(cyclopropylmethoxy)-2-[(1r,4r)-4-({4-[4-(2,6-dioxopiperidin-3-yl)-3- oxopiperazin-1-yl]piperidin-1-yl}methyl)cyclohexyl]-2H-indazol-5-yl]pyrazolo[1,5-a]pyrimidine- 3-carboxamide Step 1: tert-butyl 4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazine-1-carboxylate
Figure imgf000102_0001
To a solution of tert-butyl 3-oxopiperazine-1-carboxylate (5.21 g, 26.0 mmol) in tetrahydrofuran (100 mL) was added sodium hydride (1.04 g, 26.0 mmol, 60%) at 0 °C. The reaction mixture was heated at 60 °C for 30 min before its drop wise addition into a solution of 3-bromopiperidine-2,6-dione (2.5 g, 13.0 mmol) in tetrahydrofuran (50 mL). The reaction mixture was stirred at 60 °C for 9.5 h, then quenched by 10% ammonium chloride solution (50 mL) at 0 °C and extracted with ethyl acetate (5 x 100 mL), washed with brine (100 mL), dried over anhydrous sodium sulfate, filtered, and concentrated in vacuum. The residue was purified by preparative TLC eluted with 4:1 solution of ethyl acetate:THF to afford tert-butyl 4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazine-1-carboxylate (0.7 g, 17%) as a yellow solid.1H NMR (400 MHz, DMSO-d6) δ = 10.89 (s, 1H), 5.12 - 4.93 (m, 1H), 3.97 (br s, 2H), 3.67 - 3.56 (m, 1H), 3.51 - 3.42 (m, 1H), 3.32 - 3.28 (m, 1H), 3.27 - 3.19 (m, 1H), 2.85 - 2.71 (m, 1H), 2.54 (br s, 1H), 2.36 - 2.22 (m, 1H), 1.91 - 1.80 (m, 1H), 1.42 (s, 9H). Step 2: 3-(2-oxopiperazin-1-yl)piperidine-2,6-dione
Figure imgf000102_0002
To a solution of tert-butyl 4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazine-1-carboxylate (0.5 g, 1.6 mmol) in dichloromethane (5 mL) was added trifluoroacetic acid (7.70 g, 40.5 mmol, 5 mL). The reaction mixture was stirred at 25 °C for 1 h, then concentrated under reduced pressure to afford 3-(2-oxopiperazin-1-yl)piperidine-2,6-dione trifluoroacetic acid (0.52 g, crude) as a yellow solid, which was used in the next step without further purification. Step 3: benzyl 4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidine-1-carboxylate
Figure imgf000103_0001
To a solution of benzyl 4-oxopiperidine-1-carboxylate (7.52 g, 32.3 mmol, 6.43 mL) in dichloromethane (50 mL) was added acetic acid (5.49 g, 91.4 mmol, 5.23 mL) and 3-(2- oxopiperazin-1-yl)piperidine-2,6-dione trifluoroacetic acid (10.45 g, 32.1 mmol), stirred at 25 °C for 0.5 h, then added sodium triacetoxyborohydride (17.02 g, 80.3 mmol) to the mixture. The reaction was stirred at 25 °C for 9.5 h, then quenched by water (100 mL) and basified with saturated sodium bicarbonate solution (pH 8), extracted with dichloromethane (3 x 200 mL). The orange phase was washed with brine (100 mL), dried over anhydrous sodium sulfate, and concentrated under reduced pressure. The residue was purified by preparative HPLC (Phenomenex Luna C18 (250*70mm, 10 um); mobile phase: [water (formic acid)- acetonitrile]; B%: 10-35%) to afford benzyl 4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1- yl)piperidine-1-carboxylate (2 g, 15%) as a white solid.1H NMR (400 MHz, DMSO-d6) δ =10.84 (s, 1H), 7.43 - 7.25 (m, 5H), 5.06 (s, 2H), 4.97 - 4.85 (m, 1H), 4.07 - 3.95 (m, 2H), 3.26 - 3.07 (m, 4H), 2.91 - 2.57 (m, 5H), 2.55 - 2.52 (m, 1H), 2.47 - 2.41 (m, 1H), 2.36 - 2.22 (m, 1H), 1.87 - 1.71 (m, 3H), 1.36 - 1.22 (m, 2H). Step 4: 3-(2-oxo-4-(piperidin-4-yl) piperazin-1-yl)piperidine-2,6-dione
Figure imgf000103_0002
To a solution of benzyl 4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidine-1- carboxylate (1 g, 2.3 mmol) in 2,2,2-trifluoroethanol (20 mL) was added 10% palladium on carbon (1 g, 939.7 μmol) under nitrogen atmosphere. The suspension was degassed under vacuum and purged with hydrogen balloon several times. The mixture was stirred under hydrogen balloon (15 psi) at 25 °C for 2 h, then filtered and concentrated under reduced pressure to afford 3-(2-oxo-4-(piperidin-4-yl)piperazin-1-yl)piperidine-2,6-dione (0.5 g, 73%) as a white gum, which was used in the next step without further purification. Step 3: N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-formylcyclohexyl)-2H-indazol-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000103_0003
To a solution of N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-(hydroxymethyl)cyclohexyl)- 2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (200 mg, 434.28 μmol, 1 eq) in dichloromethane (15 mL) was added 1,1,1-triacetoxy-1,1-dihydro-1,2-benziodoxol-3-(1H)- one (552.59 mg, 1.30 mmol, 403.35 μL, 3 eq). The mixture was stirred at 25 °C for 2 h. The mixture was filtered. The residue was purified by silica gel chromatography (0-5% methanol in dichloromethane) to give N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-formylcyclohexyl)-2H- indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (190 mg, 414.38 μmol, 95% yield) as a yellow solid. MS (ESI) m/z: 459.2 [M+H]+. Step 4: N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3- oxopiperazin-1-yl)piperidin-1-yl)methyl)cyclohexyl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000104_0001
To a solution of N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-formylcyclohexyl)-2H-indazol- 5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (120 mg, 261.72 μmol, 1 eq), 3-(2-oxo-4- (piperidin-4-yl)piperazin-1-yl)piperidine-2,6-dione (120 mg, 407.68 μmol, 1.56 eq) in THF (4 mL) and DMF (1 mL) was added acetic acid (36.75 mg, 611.97 μmol, 35 μL, 2.34 eq) and sodium triacetoxyborohydride (138.67 mg, 654.29 μmol, 2.5 eq). The mixture was stirred at 0 °C for 3 h. The reaction mixture was quenched by addition water 300 mL at 0°C, and then extracted with dichloromethane (30 mL × 3). The combined organic layers were washed with brine (30 mL × 3), dried over anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by preparative HPLC (Synergi C18150*25mm* 10μm; mobile phase: [water(formic acid)-acetonitrile]; B%: 12-32%) to afford N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin- 1-yl)piperidin-1-yl)methyl)cyclohexyl)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide (46.8 mg, 55.0 μmol, 21% yield, 92% purity, formic acid) as a yellow solid. MS (ESI) m/z: 737.2 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 10.86 (s, 1H), 10.64 (s, 1H), 9.37 (dd, J = 1.6, 7.2 Hz, 1H), 8.86 (dd, J = 1.6, 4.4 Hz, 1H), 8.72 (d, J = 10.4 Hz, 2H), 8.24 (s, 1H), 8.18 (s, 1H), 7.31 (dd, J = 4.0, 6.8 Hz, 1H), 7.02 (s, 1H), 4.93 (br d, J = 1.2 Hz, 1H), 4.37 - 4.25 (m, 1H), 4.01 (d, J = 6.8 Hz, 2H), 3.25 - 3.09 (m, 4H), 2.91 (br d, J = 10.8 Hz, 2H), 2.83 - 2.70 (m, 2H), 2.69 - 2.63 (m, 1H), 2.29 - 2.05 (m, 6H), 2.02 - 1.66 (m, 10H), 1.63 - 1.34 (m, 4H), 1.07 (q, J = 12.0 Hz, 2H), 0.74 - 0.67 (m, 2H), 0.45 (q, J = 4.8 Hz, 2H). Example 31: N-(2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidin-1- yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide Step 1: N-(2-((1r,4r)-4-formylcyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000105_0001
To a solution of N-[2-[4-(hydroxymethyl)cyclohexyl]-6-isopropoxy-1-oxo-isoindolin-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (0.68 g, 1.47 mmol, 1 eq) in DCM (6 mL) was added (1,1-diacetoxy-3-oxo-1λ5,2-benziodoxol-1-yl) acetate (1.87 g, 4.40 mmol, 1.36 mL, 3 eq). The mixture was stirred at 25 °C for 1 h. The reaction mixture was filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (petroleum ether/ethyl acetate=50/1 to 0/1) to give N-[2-(4- formylcyclohexyl)-6-isopropoxy-1-oxo-isoindolin-5-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide (0.3 g, 650 μmol, 44% yield) as a yellow solid. MS (ESI) m/z: 462.2 [M+H]+. Step 2: N-(2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)piperidin-1- yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000105_0002
To a solution of N-(2-((1r,4r)-4-formylcyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (170.00 mg, 368.4 μmol) and 3-(2-oxo-4- (piperidin-4-yl)piperazin-1-yl)piperidine-2,6-dione (170.23 mg, 578.3 μmol) in tetrahydrofuran (4.8 mL) and N,N-dimethylformamide (1.2 mL) was added acetic acid (52.50 mg, 874.3 μmol, 50.00 μL) at 0 °C and stirred at 0 °C for 0.5 h. Then sodium triacetoxyborohydride (195 mg, 920.1 μmol) was added and mixture was stirred at 0 °C for 2 h. The reaction mixture was quenched by water (100 mL) and basified with saturated sodium bicarbonate solution (pH 8), extracted with dichloromethane (3 x 200 mL). The orange phase was washed with brine (100 mL), dried over anhydrous sodium sulfate, and concentrated under reduced pressure. The residue was purified by preparative HPLC (Phenomenex Synergi C18150*25mm* 10um; mobile phase: [water (formic acid)-acetonitrile]; B%: 11%-31%, 10 min) to give 55 mg white solid. The white solid was further purified by prep-HPLC (column: Phenomenex Synergi C18150*25mm*10um; mobile phase: [water (formic acid)-acetonitrile]; B%: 11%-31%, 10 min) to afford N-(2-((1r,4r)-4-((4-(4-(2,6-dioxopiperidin-3-yl)-3- oxopiperazin-1-yl)piperidin-1-yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (23.5 mg, 8%) as a white solid. MS (ESI) m/z: 740.3 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ = 10.85 (s, 1H), 10.75 (s, 1H), 9.40 (dd, J = 1.6, 6.8 Hz, 1H), 8.89 (dd, J = 1.6, 4.4 Hz, 1H), 8.76 - 8.71 (m, 2H), 7.36 (dd, J = 4.0, 6.8 Hz, 1H), 7.32 (s, 1H), 4.98 - 4.84 (m, 2H), 4.39 (s, 2H), 3.98 (br s, 1H), 3.25 - 3.13 (m, 4H), 2.90 (br d, J = 10.8 Hz, 2H), 2.82 - 2.71 (m, 2H), 2.70 - 2.64 (m, 1H), 2.29 - 2.19 (m, 2H), 2.14 (br d, J = 6.0 Hz, 2H), 1.94 - 1.72 (m, 9H), 1.66 - 1.32 (m, 12H), 1.09 - 0.95 (m, 2H). Example 32: N-[6-(cyclopropylmethoxy)-2-[(1r,4r)-4-({1-[4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl]piperidin-4-yl}(methyl)amino)cyclohexyl]-2H-indazol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide Step 1: N-(2-(1-((1-(2-chloroethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-6- (cyclopropylmethoxy)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000106_0001
To a solution of 2-chloroacetaldehyde (366.0 mg, 1.87 mmol, 300.0 mL, 40% purity, 3.22 eq), N-(6-(cyclopropylmethoxy)-2-(1-((3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-2H- indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (0.3 g, 578.50 mmol, 1 eq) in DMSO (4 mL) and 1,2-dichloroethane (4 mL) was added acetic acid (126.0 mg, 2.10 mmol, 120.0 mL, 3.63 eq). The mixture was stirred at 25 °C for 30 min, followed by the addition of sodium triacetoxyborohydride (600.0 mg, 2.83 mmol, 4.89 eq). The mixture was stirred at 25 °C for 9.5 h. The reaction mixture was quenched by the addition of a 10% aqueous solution of sodium bicarbonate (25 mL) at 0 °C and then extracted with dichloromethane (250 mL × 5), washed with brine (100 mL), dried over anhydrous sodium sulfate, filtered and concentrated in vacuum to afford N-(2-(1-((1-(2-chloroethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-6- (cyclopropylmethoxy)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (165 mg, 283.95 mmol, 49% yield) as a yellow solid. MS (ESI) m/z: 581.1 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 10.63 (s, 1H), 9.36 (d, J = 7.2 Hz, 1H), 8.94 - 8.83 (m, 1H), 8.72 (d, J = 10.0 Hz, 2H), 8.29 (s, 1H), 7.31 (dd, J = 4.4, 7.2 Hz, 1H), 7.03 (s, 1H), 4.45 - 4.26 (m, 1H), 4.02 (d, J = 7.2 Hz, 2H), 3.57 (t, J = 6.0 Hz, 2H), 3.49 (br dd, J = 8.8, 14.8 Hz, 2H), 3.21 (dd, J = 8.8, 22.0 Hz, 2H), 2.98 (br d, J = 11.6 Hz, 2H), 2.85 - 2.73 (m, 4H), 2.38 - 2.28 (m, 2H), 2.15 - 2.01 (m, 4H), 1.54 - 1.44 (m, 1H), 0.74 - 0.66 (m, 2H), 0.45 (q, J = 4.8 Hz, 2H). Step 2: N-(6-(cyclopropylmethoxy)-2-(1-((1-(2-(4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazin-1- yl)ethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000107_0001
To a solution of N-(2-(1-((1-(2-chloroethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)- 6-(cyclopropylmethoxy)-2H-indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (165 mg, 283.95 μmol, 1 eq), 3-(2-oxopiperazin-1-yl)piperidine-2,6-dione (200 mg, 614.93 mmol, 2.17 eq, Trifluoroacetic acid) in dimethylsulfoxide (5 mL) was added diisopropylethylamine (742.00 mg, 5.74 mmol, 1 mL, 20.22 eq) and potassium iodide (100 mg, 602.4 mmol, 2.12 eq). The mixture was stirred at 100 °C for 9.5 h. The reaction mixture was quenched by addition water 50 mL and extracted with dichloromethane (100 mL × 3), The orange phase was washed with brine 100 mL, dried over anhydrous sodium sulfate and concentrated under reduced pressure to give residue. The residue was purified by preparative HPLC (Phenomenex Synergi C18150*25mm* 10um; mobile phase: [water (formic acid)- acetonitrile]; B%: 1-31%) to afford N-(6-(cyclopropylmethoxy)-2-(1-((1-(2-(4-(2,6- dioxopiperidin-3-yl)-3-oxopiperazin-1-yl)ethyl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-2H- indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (16.5 mg, 20.37 mmol, 7% yield, 99% purity, formic acid) as a yellow solid. MS (ESI) m/z: 756.3 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 10.84 (s, 1H), 10.65 (s, 1H), 9.36 (dd, J = 1.6, 7.2 Hz, 1H), 8.86 (dd, J = 1.6, 4.0 Hz, 1H), 8.72 (d, J = 8.4 Hz, 2H), 8.30 (s, 1H), 8.20 (s, 1H), 7.31 (dd, J = 4.4, 7.2 Hz, 1H), 7.03 (s, 1H), 5.00 - 4.83 (m, 1H), 4.43 - 4.28 (m, 1H), 4.01 (d, J = 7.2 Hz, 2H), 3.18 - 3.08 (m, 6H), 3.01 - 2.97 (m, 2H), 2.83 - 2.70 (m, 5H), 2.65 - 2.59 (m, 4H), 2.41 - 2.27 (m, 6H), 2.13 - 2.04 (m, 4H), 1.86 - 1.77 (m, 1H), 1.55 - 1.43 (m, 1H), 0.74 - 0.67 (m, 2H), 0.48 - 0.42(m, 2H). Example 33: N-[6-(cyclopropylmethoxy)-2-[(1r,4r)-4-({1-[4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl]piperidin-4-yl}(methyl)amino)cyclohexyl]-2H-indazol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide Step 1: tert-butyl 4-(((1r,4r)-4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)cyclohexyl)amino)piperidine-1-carboxylate
Figure imgf000108_0001
To a solution of N-[2-(4-aminocyclohexyl)-6-(cyclopropylmethoxy)indazol-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (0.3 g, 673.4 mmol), tert-butyl 4-oxopiperidine-1- carboxylate (134.17 mg, 673.4 mmol) in 1,2-dichloroethane (3 mL) was added N-methyl morphine (204.34 mg, 2.0 mmol, 222.10 mL). The mixture was stirred for 0.5 h prior to the addition of sodium triacetoxyborohydride (428.15 mg, 2.0 mmol). The mixture was allowed to stir at 0 °C for 0.5 h, after which tert-butyl 4-oxopiperidine-1-carboxylate (134.17 mg, 673.4 mmol) was added and stirred for 0.5 h. Additional sodium triacetoxyborohydride (428.15 mg, 2.0 mmol) was added and stirring continued 0 °C for 0.5 h. The reaction mixture was used in the next step directly. Step 2: tert-butyl 4-(((1r,4r)-4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)cyclohexyl)(methyl)amino)piperidine-1-carboxylate
Figure imgf000108_0002
A solution of tert-butyl 4-[[4-[6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carbonylamino)indazol-2-yl]cyclohexyl]amino]piperidine-1-carboxylate (0.42 g, 668.0 mmol, 981.6 mL) and formaldehyde (200.57 mg, 6.7 mmol, 184.01 mL) in 1,2-dichloroethane (3 mL) was allowed to stir for 10 min followed by the addition of sodium triacetoxyborohydride (424.71 mg, 2.0 mmol). The mixture was stirred at 25 °C for 20 min, and then diluted with water, and extracted with dichloromethane (3 x 30 mL). The combined organic phase was washed with brine (3 x 50 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under vacuum. The residue was purified by column chromatography (dichloromethane/methyl alcohol = 50/1 to 30/1) to afford tert-butyl 4-[[4-[6- (cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carbonylamino)indazol-2-yl]cyclohexyl]- methyl-amino]piperidine-1-carboxylate (0.42 g, 97%) as yellow solid. MS (ESI) m/z: 643.3 [M+H]+. Step 3: N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-(methyl(piperidin-4-yl)amino)cyclohexyl)-2H- indazol-5-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
Figure imgf000109_0001
To a solution of tert-butyl 4-[[4-[6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine- 3-carbonylamino)indazol-2-yl]cyclohexyl]-methyl-amino]piperidine-1-carboxylate (0.42 g, 653.4 μmol) in dichloromethane (4 mL) was added a solution of hydrochloric acid in methanol (4 M, 163.35 mL). The mixture was stirred at 25 °C for 0.5 h, then concentrated under vacuum to afford N-[6-(cyclopropylmethoxy)-2-[4-[methyl(4- piperidyl)amino]cyclohexyl]indazol-5-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide hydrochloride (0.37 g, crude) as a yellow solid. Step 4: N-(6-(cyclopropylmethoxy)-2-((1r,4r)-4-((1-(4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl)piperidin-4-yl)(methyl)amino)cyclohexyl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000109_0002
A mixture of N-[6-(cyclopropylmethoxy)-2-[4-[methyl(4- piperidyl)amino]cyclohexyl]indazol-5-yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide hydrochloride (0.2 g, 345.3 mmol), 3-(4-bromo-2-fluoro-phenyl)piperidine-2,6-dione (98.80 mg, 345.3 mmol), cesium carbonate (281.3 mg, 863.4 μmol) in N,N-dimethylformamide (1 mL) was added 1,3-bis[2,6-bis(1-ethylpropyl)phenyl]-2H-imidazole;3- chloropyridine;dichloropalladium (8.22 mg, 10.4 mmol) was degassed and purged with nitrogen 3 times, then the mixture was stirred at 80 °C for 3 h under a nitrogen atmosphere. The mixture was concentrated under vacuum. The residue was purified by preparative TLC (dichloromethane/methyl alcohol = 10/1) then by semi-preparative reverse phase HPLC (column: Phenomenex Synergi C18150*25mm* 10mm; mobile phase: [water(formic acid)- acetonitrile]; B%: 15%-45%) to afford N-[6-(cyclopropylmethoxy)-2-[4-[[1-[4-(2,6-dioxo-3- piperidyl)-3-fluoro-phenyl]-4-piperidyl]-methyl-amino]cyclohexyl]indazol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide (22.7 mg, 8%) as an off-white solid. MS (ESI) m/z: 748.3 [M+H]+.1HNMR (400 MHz, DMSO-d6) δ = 10.82 (s, 1 H) 10.65 (s, 1 H) 9.38 (dd, J=6.80, 1.60 Hz, 1 H) 8.87 (dd, J=4.40, 1.20 Hz, 1 H) 8.73 (s, 1 H) 8.71 (s, 1 H) 8.25 (s, 1 H) 7.29 - 7.34 (m, 1 H) 7.07 (t, J=8.80 Hz, 1 H) 7.02 (s, 1 H) 6.74 (br d, J=2.80 Hz, 1 H) 6.71 (s, 1 H) 4.28 - 4.39 (m, 1 H) 4.01 (d, J=7.20 Hz, 2 H) 3.88 (dd, J=12.40, 5.20 Hz, 1 H) 3.75 (br d, J=12.00 Hz, 2 H) 2.62 - 2.79 (m, 6 H) 2.23 (s, 3 H) 2.11 - 2.20 (m, 3 H) 1.92 - 2.01 (m, 3 H) 1.76 - 1.91 (m, 5 H) 1.51 - 1.61 (m, 4 H) 0.70 (br d, J=8.00 Hz, 2 H) 0.45 (d, J=5.20 Hz, 2 H). Table 4. The following compounds may be prepared in an analogous fashion as described for the synthesis of Example 33.
Figure imgf000110_0001
Example 36: N-[1-oxo-6-(propan-2-yloxy)-2-[(1r,4r)-4-({1-[4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl]azetidin-3-yl}(methyl)amino)cyclohexyl]-2,3-dihydro-1H-isoindol-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide Step 1: 2-((1r,4r)-4-((1-(4-(2,6-bis(benzyloxy)pyridin-3-yl)-3-fluorophenyl)azetidin-3- yl)(methyl)amino)cyclohexyl)-6-isopropoxy-5-nitroisoindolin-1-one
Figure imgf000111_0001
To a solution of 2-[4-[azetidin-3-yl(methyl)amino]cyclohexyl]-6-isopropoxy-5-nitro- isoindolin-1-one (0.35 g, 869.6 mmol) and 2,6-bis(benzyloxy)-3-(4-bromo-2- fluorophenyl)pyridine (403.78 mg, 869.6 mmol) in dioxane (8 mL) was added cesium carbonate (1.13 g, 3.5 mmol) and [(2-dicyclohexylphosphino-2′,6′-bis(N,N-dimethylamino)- 1,1′-biphenyl)-2-(2′-amino-1,1′-biphenyl)] palladium(II) methanesulfonate (70.12 mg, 87.0 mmol). The reaction mixture was stirred at 90 °C for 12 h under nitrogen, then concentrated under reduced pressure. The residue was purified by semi-preparative reverse phase HPLC (Phenomenex Luna C18 (250*70mm,10 um) column; mobile phase: [water(formic acid)- acetonitrile]; B%: 40 to 70%) to afford 2-((1r,4r)-4-((1-(4-(2,6-bis(benzyloxy)pyridin-3-yl)-3- fluorophenyl)azetidin-3-yl)(methyl)amino)cyclohexyl)-6-isopropoxy-5-nitroisoindolin-1-one (0.45 g, 66%) as a brown solid. MS (ESI) m/z: 786.2 [M+H]+. Step 2: 3-(4-(3-(((1r,4r)-4-(5-amino-6-isopropoxy-1-oxoisoindolin-2- yl)cyclohexyl)(methyl)amino)azetidin-1-yl)-2-fluorophenyl)piperidine-2,6-dione
Figure imgf000111_0002
To a solution of 2-((1r,4r)-4-((1-(4-(2,6-bis(benzyloxy)pyridin-3-yl)-3- fluorophenyl)azetidin-3-yl)(methyl)amino)cyclohexyl)-6-isopropoxy-5-nitroisoindolin-1-one (0.4 g, 509.0 μmol) in ethyl acetate (15 mL) was added 10% palladium on carbon (1 g) under a nitrogen atmosphere. The suspension was degassed and purged with H23 times. The mixture was stirred under H2 (15 psi) at 25 °C for 12 h. The reaction mixture was filtered and washed with ethanol (2 x 20 mL). The collected filtrate was concentrated. The residue was purified by preparative TLC (dichloromethane /methyl alcohol=10/1) to afford 3-(4-(3- (((1r,4r)-4-(5-amino-6-isopropoxy-1-oxoisoindolin-2-yl)cyclohexyl)(methyl)amino)azetidin-1- yl)-2-fluorophenyl)piperidine-2,6-dione (140 mg, 48%) as a brown solid. MS (ESI) m/z: 578.3 [M+H]+. Step 3: N-(2-((1r,4r)-4-((1-(4-(2,6-dioxopiperidin-3-yl)-3-fluorophenyl)azetidin-3- yl)(methyl)amino)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000112_0001
To a solution of pyrazolo[1,5-a]pyrimidine-3-carboxylic acid (110.13 mg, 675.1 mmol) in pyridine (15 mL) was added 3-(4-(3-(((1r,4r)-4-(5-amino-6-isopropoxy-1-oxoisoindolin-2- yl)cyclohexyl)(methyl)amino)azetidin-1-yl)-2-fluorophenyl)piperidine-2,6-dione (130 mg, 225.0 mmol) and 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (130.0 mg, 678.1 mmol). The reaction was stirred at 50 °C for 12 h. The mixture was poured into ice- water (40 mL). The aqueous phase was extracted with dichloromethane (3 x 20 mL). The combined organic phase was washed with brine (3 x 30 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under vacuum. The residue was purified by preparative TLC (dichloromethane /methyl alcohol=10/1) then by semi-preparative reverse phase HPLC (Phenomenex Synergi C18150*25mm* 10um; mobile phase: [water(formic acid)- acetonitrile]; B%: 12-42%) to afford N-(2-((1r,4r)-4-((1-(4-(2,6-dioxopiperidin-3-yl)-3- fluorophenyl)azetidin-3-yl)(methyl)amino)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (105.1 mg, 64%) as a purple solid. MS (ESI) m/z: 723.2 [M+H]+; 1H NMR (400MHz, DMSO-d6) δ 10.79 (s, 1 H) 10.75 (s, 1 H) 9.40 (dd, J=7.2, 1.6 Hz, 1 H) 8.89 (dd, J=4.0, 1.6 Hz, 1 H) 8.73 (s, 2 H) 8.02 - 8.23 (m, 1 H) 7.29 - 7.38 (m, 2 H) 7.05 (t, J=8.4 Hz, 1 H) 6.19 - 6.27 (m, 2 H) 4.89 (dt, J=12.0, 6.0 Hz, 1 H) 4.38 (s, 2 H) 3.96 - 4.03 (m, 1 H) 3.93 (br t, J=6.8 Hz, 2 H) 3.86 (dd, J=12.4, 5.2 Hz, 1 H) 3.77 (quin, J=6.0 Hz, 1 H) 3.59 (m, 2 H) 2.67 - 2.78 (m, 1 H) 2.44 (br s, 2 H) 2.17 (s, 3 H) 2.06 - 2.15 (m, 1 H) 1.90 - 1.99 (m, 1 H) 1.70 - 1.81 (m, 4 H) 1.58 - 1.68 (m, 2 H) 1.45 - 1.53 (m, 2 H) 1.44 (d, J=6.0 Hz, 6 H). Example 37: N-[6-(cyclopropylmethoxy)-2-(1-{2-[6-(2,6-dioxopiperidin-3-yl)-1,2,3,4- tetrahydroisoquinolin-2-yl]-2-oxoethyl}piperidin-4-yl)-2H-indazol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide Step 1: tert-butyl 6-(2,6-bis(benzyloxy)pyridin-3-yl)-3,4-dihydroisoquinoline-2(1H)- carboxylate
Figure imgf000113_0001
A flask charged with 2,6-bis(benzyloxy)-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)pyridine (6.50 g, 15.6 mmol,), potassium phosphate (9.60 g, 45.2 mmol), tert-butyl 6- bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate (4.80 g, 15.4 mmol), and [1,1’- bis(diphenylphosphino) ferrocene]dichloropalladium(II)dichloromethane (2.40 g, 3.3 mmol) in dioxane (150 mL) and water (15 mL) was de-gassed and then heated to 100 °C for 12 hours under a nitrogen atmosphere. The reaction mixture was quenched by water (50 mL) at 0 °C, and then diluted with ethyl acetate (50 mL) and extracted with ethyl acetate (3 x 150 mL). The combined organic layers were washed with brine (100 mL), dried over anhydrous sodium sulfate, filtered, and concentrated in vacuum. The residue was purified by silica gel column chromatography (petroleum ether/ethyl acetate=50/1 to 5/1) to afford tert-butyl 6- (2,6-bis(benzyloxy)pyridin-3-yl)-3,4-dihydroisoquinoline-2(1H)-carboxylate (6.6 g, 82%) as a yellow gum. MS (ESI) m/z: 523.2 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ 7.72 (d, J = 8.0 Hz, 1H), 7.47 - 7.42 (m, 2H), 7.41 - 7.29 (m, 10H), 7.17 (d, J = 8.0 Hz, 1H), 6.54 (d, J = 8.0 Hz, 1H), 5.38 (d, J = 5.2 Hz, 4H), 4.50 (br s, 2H), 3.59 - 3.53 (m, 2H), 2.77 (br t, J = 5.6 Hz, 2H), 1.43 (s, 9H). Step 2: tert-butyl 6-(2,6-dioxopiperidin-3-yl)-3,4-dihydroisoquinoline-2(1H)-carboxylate
Figure imgf000113_0002
To a solution of tert-butyl 6-(2,6-bis(benzyloxy)pyridin-3-yl)-3,4-dihydroisoquinoline- 2(1H)-carboxylate (3.0 g, 5.7 mmol) in ethyl acetate (300 mL) was added 10% palladium on carbon (5 g, 4.7 mmol) under an atmosphere of nitrogen. The suspension was degassed under vacuum and purged with hydrogen balloon several times. The mixture was stirred under hydrogen balloon (15 psi) at 25 °C for 10 h, then filtered and concentrated under reduced pressure to afford tert-butyl 6-(2,6-dioxopiperidin-3-yl)-3,4-dihydroisoquinoline- 2(1H)-carboxylate (1.98 g, crude) as a white solid, which was used in the next step without further purification. MS (ESI) m/z: 245.0 [M-Boc]+; 1H NMR (400 MHz, DMSO-d6) δ = 10.88 (s, 1H), 7.18 (br d, J = 8.0 Hz, 1H), 7.12 - 7.05 (m, 2H), 4.54 (br s, 2H), 3.86 (br dd, J = 4.8, 11.2 Hz, 1H), 3.60 (br t, J = 5.6 Hz, 2H), 2.81 (br t, J = 5.6 Hz, 2H), 2.77 - 2.65 (m, 2H), 2.32 - 2.17 (m, 1H), 2.13 - 2.03 (m, 1H), 1.49 (s, 9H). Step 3: 3-(1,2,3,4-tetrahydroisoquinolin-6-yl)piperidine-2,6-dione
Figure imgf000114_0001
To a solution of tert-butyl 6-(2,6-dioxopiperidin-3-yl)-3,4-dihydroisoquinoline-2(1H)- carboxylate (1.98 g, 5.7 mmol) in dichloromethane (20 mL) was added trifluoroacetic acid (30.80 g, 27.0 mmol, 20 mL). The mixture was stirred at 25 °C for 0.5 h. The reaction mixture was concentrated under reduced pressure to afford 3-(1,2,3,4-tetrahydroisoquinolin- 6-yl)piperidine-2,6-dione trifluoroacetic acid (2.06 g, 100%) as a white solid, which was used in the next step without further purification. MS (ESI) m/z: 245.1 [M+H]+. Step 4: tert-butyl 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)- 2H-indazol-2-yl)piperidin-1-yl)acetate
Figure imgf000114_0002
To a solution of N-(6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-2H-indazol-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (0.3 g, 695.3 mmol), tert-butyl 2-bromoacetate (145.20 mg, 744.4 μmol, 110 mL) in DMSO (4 mL) was added diisopropylethylamine (296.80 mg, 2.3 mmol, 400 mL) and the mixture was stirred at 60 °C for 12 h. The reaction mixture was quenched by water (50 mL) and extracted with ethyl acetate (3 x 100 mL), the organic phase was washed with brine (100 mL), dried over anhydrous sodium sulfate, and concentrated under reduced pressure. The residue was purified by preparative TLC (eluted with a 10:1 solution of dichloromethane:methanol) to afford tert-butyl 2-(4-(6- (cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)-2H-indazol-2-yl)piperidin- 1-yl)acetate (250 mg, 66%) as a white solid. MS (ESI) m/z: 546.3 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ 10.64 (s, 1H), 9.38 (br d, J = 6.8 Hz, 1H), 8.87 (br d, J = 3.6 Hz, 1H), 8.78 - 8.69 (m, 2H), 8.31 (s, 1H), 7.31 (br d, J = 4.0 Hz, 1H), 7.04 (s, 1H), 4.40 - 4.28 (m, 1H), 4.02 (br d, J = 6.8 Hz, 2H), 3.64 - 3.55 (m, 2H), 3.18 (s, 2H), 2.97 (br d, J = 11.6 Hz, 2H), 2.07 (br s, 2H), 1.79 - 1.73 (m, 2H), 1.51 - 1.42 (m, 11H), 0.74 - 0.67 (m, 2H), 0.48 - 0.43 (m, 2H). Step 5: 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)-2H- indazol-2-yl)piperidin-1-yl)acetic acid
Figure imgf000115_0001
To a solution of tert-butyl 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine- 3-carboxamido)-2H-indazol-2-yl)piperidin-1-yl)acetate (120 mg, 219.9 mmol) in dichloromethane (2 mL) was added trifluoroacetic acid (1.54 g, 13.5 mmol, 1 mL) and the mixture was stirred at 25 °C for 3 h. The reaction mixture was concentrated under reduced pressure to afford 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)piperidin-1-yl)acetic acid (107 mg, 99%) as a yellow gum, which was used in the next step without further purification. MS (ESI) m/z: 490.2 [M+H]+. Step 6: N-(6-(cyclopropylmethoxy)-2-(1-(2-(6-(2,6-dioxopiperidin-3-yl)-3,4- dihydroisoquinolin-2(1H)-yl)-2-oxoethyl)piperidin-4-yl)-2H-indazol-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000115_0002
To a solution of 2-(4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)-2H-indazol-2-yl)piperidin-1-yl)acetic acid (107 mg, 218.6 mmol) and 3- (1,2,3,4-tetrahydroisoquinolin-6-yl)piperidine-2,6-dione trifluoroacetic acid (150 mg, 418.6 mmol) in N,N-dimethylformamide (3 mL) was added diisopropylethylamine (222.60 mg, 1.7 mmol, 300 mL) and O-(7-azabenzotriazole-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (170 mg, 447.1 μmol). The mixture was stirred at 25 °C for 1 h, then quenched by water (50 mL) and extracted with ethyl acetate (3 x 100 mL), the organic phase was washed with brine (100 mL), dried over anhydrous sodium sulfate, and concentrated under reduced pressure. The residue was purified by preparative HPLC (Phenomenex Synergi C18150*25mm* 10μm column; mobile phase: [water (formic acid)-acetonitrile]; B%: 13-49%) to afford N-[6-(cyclopropylmethoxy)-2-[1-[2-[6-(2,6-dioxo-3-piperidyl)-3,4-dihydro- 1H-isoquinolin-2-yl]-2-oxo-ethyl]-4-piperidyl]indazol-5-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide (73 mg, 43%) as an off-white solid. MS (ESI) m/z: 716.3 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ 10.83 (s, 1H), 10.66 (s, 1H), 9.38 (d, J = 7.2 Hz, 1H), 8.90 - 8.84 (m, 1H), 8.77 (s, 1H), 8.71 (s, 1H), 8.37 - 8.27 (m, 1H), 7.32 (dd, J = 4.4, 6.8 Hz, 1H), 7.22 - 7.14 (m, 1H), 7.11 - 7.04 (m, 3H), 4.66 (br s, 2H), 4.03 (br d, J = 6.8 Hz, 2H), 3.89 - 3.58 (m, 5H), 2.92 (br s, 2H), 2.85 - 2.57 (m, 6H), 2.46 - 2.13 (m, 6H), 2.06 - 1.97 (m, 1H), 1.55 - 1.43 (m, 1H), 0.75 - 0.67 (m, 2H), 0.49 - 0.43 (m, 2H). Example 38: N-[1-oxo-6-(propan-2-yloxy)-2-[(1r,4r)-4-{[6-(2,6-dioxopiperidin-3-yl)-1,2,3,4- tetrahydroisoquinolin-2-yl]methyl}cyclohexyl]-2,3-dihydro-1H-isoindol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide
Figure imgf000116_0001
A solution of 3-(1,2,3,4-tetrahydroisoquinolin-6-yl)piperidine-2,6-dione formic acid (0.062 g, 213.6 mmol), triethylamine (47.54 mg, 469.8 mmol, 65.4 mL), N-[2-(4- formylcyclohexyl)-6-isopropoxy-1-oxo-isoindolin-5-yl]pyrazolo[1,5-a]pyrimidine-3- carboxamide (98.56 mg, 213.6 mmol) and in tetrahydrofuran (0.4 mL) and N,N- dimethylformamide (0.1 mL) was stirred at 0°C for 0.5 h followed by the addition of sodium triacetoxyborohydride (135.79 mg, 640.7 mmol). The mixture was stirred at 25 °C for 11.5 h. The residue was concentrated under vacuum and triethylamine was added to adjust the pH to between 7 and 8. The mixture was extracted with dichloromethane (3 x 20 mL). The combined organic phase was washed with brine (3 x 50 mL), dried over anhydrous sodium sulfate, filtered, and concentrated. The residue was purified by column chromatography (dichloromethane/methyl alcohol = 50/1 to 32.3/1) then semi-preparative reverse phase HPLC (column: Phenomenex Synergi C18150 × 25mm × 10μm; mobile phase: [(formic acid)-acetonitrile]; B%: 13%-43%, 10min) to afford N-[2-[4-[[6-(2,6-dioxo-3-piperidyl)-3,4- dihydro-1H-isoquinolin-2-yl]methyl]cyclohexyl]-6-isopropoxy-1-oxo-isoindolin-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide (58.5 mg, 38%) as a yellow solid. MS (ESI) m/z: 690.4 [M+H]+.1HNMR (400 MHz, DMSO-d6) δ = 10.80 (s, 1 H) 10.74 (s, 1 H) 9.40 (dd, J=7.20, 1.20 Hz, 1 H) 8.86 - 8.92 (m, 1 H) 8.73 (s, 2 H) 7.35 (dd, J=6.80, 4.40 Hz, 1 H) 7.32 (s, 1 H) 7.00 - 7.06 (m, 1 H) 6.93 - 6.99 (m, 2 H) 4.83 - 4.95 (m, 1 H) 4.40 (s, 2 H) 3.96 - 4.04 (m, 1 H) 3.77 (br dd, J=11.20, 4.80 Hz, 1 H) 3.56 (br s, 3 H) 2.81 (br s, 3 H) 2.64 (br d, J=5.60 Hz, 1 H) 2.13 - 2.22 (m, 1 H) 1.97 - 2.09 (m, 2 H) 1.92 (br d, J=11.60 Hz, 2 H) 1.77 (br d, J=10.00 Hz, 3 H) 1.56 - 1.70 (m, 4 H) 1.44 (s, 3 H) 1.43 (s, 3 H) 1.05 - 1.16 (m, 2 H). Example 39: N-[2-(1-{2-[6-(2,6-dioxopiperidin-3-yl)-1,2,3,4-tetrahydroisoquinolin-2-yl]-2- oxoethyl}piperidin-4-yl)-1-oxo-6-(propan-2-yloxy)-2,3-dihydro-1H-isoindol-5-yl]pyrazolo[1,5- a]pyrimidine-3-carboxamide Step 1: tert-butyl 2-(4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidin-1-yl)acetate
Figure imgf000117_0001
To a solution of N-(6-isopropoxy-1-oxo-2-(piperidin-4-yl)isoindolin-5-yl)pyrazolo[1,5- a]pyrimidine-3-carboxamide (0.15 g, 345.2 mmol) and tert-butyl 2-bromoacetate (67.34 mg, 345.2 mmol, 51.0 mL) in dimethyl sulfoxide (6 mL) was added N,N-diisopropylethylamine (133.86 mg, 1.0 mmol, 180.40 mL) and stirred at 60 °C for 12 h. The mixture was poured into ice-water (50 mL). The aqueous phase was extracted with dichloromethane (3 x 30 mL). The combined organic phase was washed with brine (3 x 30 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under vacuum. The residue was purified by preparative TLC (dichloromethane /methyl alcohol=20/1) to afford tert-butyl 2-(4-(6- isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)isoindolin-2-yl)piperidin-1- yl)acetate (0.18 g, 95%) as a light brown solid. MS (ESI) m/z: 549.3 [M+H]+. Step 2: 2-(4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3-carboxamido)isoindolin-2- yl)piperidin-1-yl)acetic acid
Figure imgf000117_0002
To a solution of tert-butyl 2-(4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidin-1-yl)acetate (0.18 g, 328.1 μmol) in dichloromethane (4 mL) was added trifluoroacetic acid (9.24 g, 81.0 mmol, 6 mL) and stirred at 25 °C for 3 h. The reaction was concentrated to afford 2-(4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5- a]pyrimidine-3-carboxamido)isoindolin-2-yl)piperidin-1-yl)acetic acid trifluoroacetate (0.15 g, 92%) as an off-white solid. MS (ESI) m/z: 493.2[M+H]+. Step 3: N-(2-(1-(2-(6-(2,6-dioxopiperidin-3-yl)-3,4-dihydroisoquinolin-2(1H)-yl)-2- oxoethyl)piperidin-4-yl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000117_0003
To a solution of 2-(4-(6-isopropoxy-1-oxo-5-(pyrazolo[1,5-a]pyrimidine-3- carboxamido)isoindolin-2-yl)piperidin-1-yl)acetic acid trifluoroacetate (70 mg, 115.4 mmol) and 3-(1,2,3,4-tetrahydroisoquinolin-6-yl)piperidine-2,6-dione trifluoroacetate (82.70 mg, 230.8 mmol) in N,N-dimethylformamide (6 mL) was added N,N-diisopropylethylamine (44.75 mg, 346.2 mmol, 60.31 mL) and (dimethylamino(triazolo(4,5-b)pyridin-3-yloxy)methylene)- dimethyl)-ammonium; hexafluorophosphate (140.0 mg, 368.2 mmol). The reaction mixture was stirred at 25 °C for 12 h. The mixture was poured into ice-water (30 mL). The aqueous phase was extracted with dichloromethane (3 x 20 mL). The combined organic phase was washed with brine (2 x 30 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under vacuum. The residue was purified by semi-preparative reverse phase HPLC (Phenomenex Synergi C18150*25mm* 10µm; mobile phase: [water(formic acid)- acetonitrile]; B%: 12-42%) to afford N-(2-(1-(2-(6-(2,6-dioxopiperidin-3-yl)-3,4- dihydroisoquinolin-2(1H)-yl)-2-oxoethyl)piperidin-4-yl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (28.2 mg, 31%) as an off-white solid. MS (ESI) m/z: 719.3 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ 10.83 (s, 1 H) 10.77 (s, 1 H) 9.54 - 9.76 (m, 1 H) 9.41 (dd, J=6.8, 1.6 Hz, 1 H) 8.90 (dd, J=4.0, 1.6 Hz, 1 H) 8.78 (s, 1 H) 8.74 (s, 1 H) 7.34 - 7.39 (m, 2 H) 7.19 (m, 1 H) 7.05 - 7.13 (m, 2 H) 4.91 (dt, J=12.0, 6.0 Hz, 1 H) 4.56 - 4.71 (m, 2 H) 4.50 (br s, 5 H) 3.50 - 3.90 (m, 5 H) 3.06 - 3.28 (m, 2 H) 2.91 - 2.95 (m, 1 H) 2.82 (m, 1 H) 2.60 - 2.73 (m, 2 H) 2.14 - 2.25 (m, 2 H) 1.79 - 2.10 (m, 4 H) 1.44 (d, J=6.0 Hz, 6 H). Example 40: N-[1-oxo-6-(propan-2-yloxy)-2-[(1r,4r)-4-{[6-(2,4-dioxo-1,3-diazinan-1-yl)- 1,2,3,4-tetrahydroisoquinolin-2-yl]methyl}cyclohexyl]-2,3-dihydro-1H-isoindol-5- yl]pyrazolo[1,5-a]pyrimidine-3-carboxamide Step 1: 6-bromo-1,2,3,4-tetrahydroisoquinoline
Figure imgf000118_0001
To a solution of tert-butyl 6-bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate (3 g, 9.6 mmol) in dichloromethane (30 mL) was added Trifluoroacetic acid (15.40 g, 135.1 mmol, 10 mL). The mixture was stirred at 25 °C for 1 h. To the mixture was added sodium bicarbonate until pH 7. The mixture was concentrated under reduced pressure to afford 6- bromo-1,2,3,4-tetrahydroisoquinoline (3 g, crude) as a yellow oil. Step 2: benzyl 6-bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate
Figure imgf000118_0002
To a solution of 6-bromo-1,2,3,4-tetrahydroisoquinoline (2 g, 9.4 mmol) in tetrahydrofuran (20 mL) and water (20 mL) was added sodium carbonate (4.00 g, 37.7 mmol) and N-N dimethyl chlorosilane (2.41 g, 14.2 mmol, 2.01 mL) at 0 °C. The mixture was stirred at 25 °C for 12 h, then filtered and concentrated under reduced pressure. Diluted with water (50 mL) and ethyl acetate (50 mL) at 0 °C, extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography (petroleum ether/ethyl acetate=10/1 to 5/1) to afford benzyl 6- bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate (3.2 g, 98%) as a yellow oil. MS (ESI) m/z: 347.9 [M+H]+. Step 3: benzyl 6-amino-3,4-dihydroisoquinoline-2(1H)-carboxylate
Figure imgf000119_0001
To a stirred of benzyl 6-bromo-3,4-dihydroisoquinoline-2(1H)-carboxylate (3 g, 8.7 mmol) and diphenylmethanimine (1.80 g, 9.9 mmol, 1.67 mL) in toluene (30 mL) was added BINAP (540.00 mg, 867.2 μmol), tris(dibenzylideneacetone)dipalladium(0) (793.47 mg, 866.5 mmol) under nitrogen atmosphere, then to the mixture was added a solution of sodium tert-butoxide (2 M, 6.07 mL). The mixture was degassed and purged with nitrogen atmosphere 3 times, and then the mixture was stirred at 90 °C for 12 h under nitrogen atmosphere. The reaction mixture was filtered, quenched by water (50 mL) at 0 °C, diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. Then to the residue was added 10% hydrogen chloride: tetrahydrofuran = 1:1 (40 mL), the mixture was stirred at 25 °C for 1 h. Ammonium hydroxide was added to adjust the pH to 7, then diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography (petroleum ether/ethyl acetate = 10/1 to 2/1) to afford benzyl 6-amino-3,4-dihydroisoquinoline-2(1H)- carboxylate (1.7 g, 69%) as a yellow oil. MS (ESI) m/z: 283.2 [M+H]+; 1H NMR (400 MHz, CDCl3) δ 7.43 - 7.29 (m, 5 H), 6.90 (dd, J = 7.2, 18.8 Hz, 1 H), 6.55 (dd, J = 2.0, 8.0 Hz, 1 H), 6.48 (s, 1 H), 5.18 (s, 2 H), 4.55 (s, 2 H), 3.79 - 3.50 (m, 4 H), 2.76 (s, 2 H). Step 4: 3-((2-((benzyloxy)carbonyl)-1,2,3,4-tetrahydroisoquinolin-6-yl)amino)propanoic acid
Figure imgf000120_0001
To a solution of benzyl 6-amino-3,4-dihydroisoquinoline-2(1H)-carboxylate (0.7 g, 2.5 mmol) in acetic acid (4 mL) and water (20 mL) was added acrylic acid (178.67 mg, 2.5 mmol, 170.16 mL). The mixture was stirred at 100 °C for 12 h. The reaction mixture was filtered and concentrated under reduced pressure. Then quenched by water (10 mL) at 0 °C, diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by column chromatography (petroleum ether/ethyl acetate=5/1 to 0/1) to afford 3-((2- ((benzyloxy)carbonyl)-1,2,3,4-tetrahydroisoquinolin-6-yl)amino)propanoic acid (0.4 g, 45%) as a white solid. MS (ESI) m/z: 355.1 [M+H]+. Step 5: benzyl 6-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)-3,4-dihydroisoquinoline-2(1H)- carboxylate
Figure imgf000120_0002
To a solution of 3-((2-((benzyloxy)carbonyl)-1,2,3,4-tetrahydroisoquinolin-6- yl)amino)propanoic acid (0.4 g, 1.1 mmol) in acetic acid (4 mL) was added urea (677.83 mg, 11.3 mmol, 605.20 mL). The mixture was stirred at 100 °C for 12 h. The reaction mixture was quenched by water (10 mL) at 0 °C, diluted with ethyl acetate (30 mL) and extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by preparative TLC (petroleum ether/ethyl acetate = 1:1) to afford benzyl 6-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)-3,4-dihydroisoquinoline-2(1H)- carboxylate (0.1 g, 23%) as a white solid. MS (ESI) m/z: 380.2 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ 10.34 (s, 1 H), 7.41 - 7.29 (m, 5 H), 7.23 - 7.19 (m, 1 H), 7.17 - 7.12 (m, 2 H), 5.13 (s, 2 H), 4.57 (d, J = 14.8 Hz, 2 H), 3.75 (t, J = 6.8 Hz, 2 H), 3.63 (s, 2 H), 3.32 (s, 2 H), 2.80 (t, J = 5.6 Hz, 2 H). Step 6: 1-(1,2,3,4-tetrahydroisoquinolin-6-yl)dihydropyrimidine-2,4(1H,3H)-dione
Figure imgf000121_0001
A mixture of benzyl 6-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)-3,4- dihydroisoquinoline-2(1H)-carboxylate (0.1 g, 263.6 μmol) and 10% palladium on carbon (0.01 g) in trifluoroethanol (4 mL) was degassed and purged with hydrogen for 3 times, and then the mixture was stirred at 25 °C for 0.5 h under hydrogen atmosphere. The reaction mixture was filtered and concentrated under reduced pressure to afford 1-(1,2,3,4- tetrahydroisoquinolin-6-yl)dihydropyrimidine-2,4(1H,3H)-dione (60 mg, 92%) as a white solid. Step 7: N-(2-((1r,4r)-4-((6-(2,4-dioxotetrahydropyrimidin-1(2H)-yl)-3,4-dihydroisoquinolin- 2(1H)-yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5-yl)pyrazolo[1,5-a]pyrimidine-3- carboxamide
Figure imgf000121_0002
To a solution of N-(2-((1r,4r)-4-formylcyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (113 mg, 244.9 mmol) in tetrahydrofuran (4 mL) and N,N-dimethylformamide (1 mL) at 0 °C was added 1-(1,2,3,4-tetrahydroisoquinolin-6- yl)dihydropyrimidine-2,4(1H,3H)-dione (60 mg, 244.6 mmol) and acetic acid (58.76 mg, 978.5 μmol, 55.96 mL) at 0 °C, The mixture was stirred at 0 °C for 0.5 h, followed by the addition of sodium borohydride acetate (155.5 mg, 733.9 mmol). The mixture was allowed to stir at 0 °C for 2 h and was then quenched by water (10 mL) at 0 °C, diluted with ethyl acetate (10 mL) and extracted with ethyl acetate (3 x 10 mL). The combined organic layers were washed with brine (3 x 10 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure. The residue was purified by preparative HPLC (column: Phenomenex Synergi C18150*25mm* 10um; mobile phase: [water(formic acid)- acetonitrile]; B%: 12-42%) to afford N-(2-((1r,4r)-4-((6-(2,4-dioxotetrahydropyrimidin-1(2H)- yl)-3,4-dihydroisoquinolin-2(1H)-yl)methyl)cyclohexyl)-6-isopropoxy-1-oxoisoindolin-5- yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide (9.3 mg, 5%) as a white solid. MS (ESI) m/z: 691.3 [M+H]+; 1H NMR (400 MHz, DMSO-d6) δ = 10.75 (s, 1 H), 10.32 (s, 1 H), 9.41 (dd, J = 1.6, 7.2 Hz, 1 H), 8.89 (dd, J = 1.6, 4.4 Hz, 1 H), 8.74 (s, 2 H), 7.42 - 7.28 (m, 2 H), 7.13 - 7.00 (m, 3 H), 4.90 (m, 1 H), 4.41 (s, 2 H), 4.06 - 3.93 (m, 1 H), 3.74 (t, J = 6.8 Hz, 2 H), 3.53 (s, 2 H), 2.73 - 2.60 (m, 5 H), 2.32 (m, 2 H), 1.99 - 1.85 (m, 2 H), 1.76 (m, 2 H), 1.70 - 1.54 (m, 3 H), 1.44 (d, J = 6.0 Hz, 6 H), 1.19 - 0.96 (m, 2 H). Example 41: Preparation of 6-(cyclopropylmethoxy)-2-(1-((1-(2-(2,6-dioxopiperidin-3-yl)-1,3- dioxoisoindolin-5-yl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin- 3-yl)-2H-indazole-5-carboxamide. Step 1: 5-bromo-4-fluoro-2-nitrobenzaldehyde
Figure imgf000122_0001
To a mixture of nitric acid (42.85 g, 442.01 mmol, 30.61 mL, 65% purity, 1.79 eq) in sulfuric acid (200 mL) was added 3-bromo-4-fluorobenzaldehyde (50 g, 246.30 mmol, 1 eq) at 0 °C. The mixture was stirred at 25 °C for 12 h. The mixture was poured into ice-water (800 mL). The aqueous phase was extracted with ethyl acetate (800 mL × 2). The combined organic phase was washed with brine (700 mL × 2), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum. The residue was purified by silica gel chromatography (0 to 2% ethyl acetate in petroleum ether) to afford 5-bromo-4-fluoro-2- nitrobenzaldehyde (50 g, 201.61 mmol, 82% yield) as a yellow solid.1H NMR (400 MHz, CDCl3) δ = 10.32 (s, 1H), 8.16 (d, J = 6.8 Hz, 1H), 7.84 (d, J = 7.6 Hz, 1H). Step 2: 5-bromo-4-hydroxy-2-nitrobenzaldehyde
Figure imgf000122_0002
To a solution of 5-bromo-4-fluoro-2-nitrobenzaldehyde (10 g, 40.32 mmol, 1 eq) in dimethylacetamide (200 mL) was added sodium acetate (13.23 g, 161.29 mmol, 4 eq). The mixture was stirred at 70 °C for 12 h. The mixture was treated with hydrochloric acid (1 M) and extracted with ethyl acetate (400 mL × 2). The combined organic phase was washed with brine (400 mL × 2), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum to yield 5-bromo-4-hydroxy-2-nitrobenzaldehyde (9 g, crude) as a yellow solid. MS (ESI) m/z: 243.8 [M-H]-. Step 3: 5-bromo-4-(cyclopropylmethoxy)-2-nitrobenzaldehyde
Figure imgf000122_0003
To a solution of 5-bromo-4-hydroxy-2-nitrobenzaldehyde (9 g, 36.58 mmol, 1 eq) in N,N-dimethylformamide (100 mL) was added potassium carbonate (15.17 g, 109.75 mmol, 3 eq) and (bromomethyl)cyclopropane (19.76 g, 146.33 mmol, 14.01 mL, 4 eq). The mixture was stirred at 80 °C for 3 h. The mixture was poured into water (300 mL). The aqueous phase was extracted with ethyl acetate (300 mL × 2). The combined organic phase was washed with brine (300 mL × 2), dried with anhydrous sodium sulfate, filtered and concentrated in vacuum. The residue was purified by silica gel chromatography (0-8% ethyl acetate in petroleum ether) to afford 5-bromo-4-(cyclopropylmethoxy)-2-nitrobenzaldehyde (10.3 g, 34.32 mmol, 94% yield) as a yellow solid.1H NMR (400 MHz, DMSO-d6) δ = 10.04 (s, 1H), 8.17 (s, 1H), 7.76 (s, 1H), 4.17 (d, J = 7.2 Hz, 2H), 1.36-1.25 (m, 1H), 0.66-0.60 (m, 2H), 0.43-0.38 (m, 2H). Step 4: tert-butyl 4-(5-bromo-6-(cyclopropylmethoxy)-2H-indazol-2-yl)piperidine-1- carboxylate.
Figure imgf000123_0001
To a solution of 5-bromo-4-(cyclopropylmethoxy)-2-nitrobenzaldehyde (10.3 g, 34.32 mmol, 1 eq) in isopropanol (150 mL) was added tert-butyl 4-aminopiperidine-1-carboxylate (6.87 g, 34.32 mmol, 1 eq) and the mixture was stirred at 80 °C for 12 h under nitrogen. The mixture was allowed to cool to 25 °C prior to the addition of tributylphosphane (20.83 g, 102.96 mmol, 25.40 mL, 3 eq). The reaction mixture was then stirred at 80 °C for another 20 h under an inert atmosphere. Once cooled, the mixture was concentrated under reduced pressure. The residue was purified by silica gel chromatography (0-40% ethyl acetate in petroleum ether) to afford tert-butyl 4-(5-bromo-6-(cyclopropylmethoxy)-2H-indazol-2- yl)piperidine-1-carboxylate (11.44 g, 25.40 mmol, 74% yield) as a yellow solid. MS (ESI) m/z: 450.2 [M+H]+.1H NMR (400 MHz, DMSO-d6) δ = 8.31 (s, 1H), 7.96 (s, 1H), 7.06 (s, 1H), 4.63 (tt, J = 4.0, 11.6 Hz, 1H), 4.08 (br d, J = 13.2 Hz, 2H), 3.93 (d, J = 6.8 Hz, 2H), 2.95 (br s, 2H), 2.08 (br dd, J = 2.4, 12.4 Hz, 2H), 1.91 (dq, J = 4.4, 12.4 Hz, 2H), 1.43 (s, 9H), 1.33- 1.24 (m, 1H), 0.63-0.57 (m, 2H), 0.42-0.36 (m, 2H). Step 4: 2-(1-(tert-butoxycarbonyl)piperidin-4-yl)-6-(cyclopropylmethoxy)-2H-indazole-5-carbo xylic acid
Figure imgf000123_0002
To a solution of tert-butyl 4-(5-bromo-6-(cyclopropylmethoxy)-2H-indazol-2- yl)piperidine-1-carboxylate (1 g, 2.22 mmol, 1 eq) and potassium acetate (446.73 mg, 4.55 mmol, 2.05 eq) in dimethyl sulfoxide (20 mL) and water (4 mL) was added DPPF (246.19 mg, 444.08 mmol, 0.2 eq) and palladium acetate (49.85 mg, 222.0 mmol, 0.1 eq) under an atmosphere of N2. The suspension was degassed and purged with carbon monoxide 3 times. The mixture was stirred under carbon monoxide (50 psi) at 80 °C for 12 h. The mixture was poured into ice-water (100 mL) and the pH was adjusted to 5 with acetic acid. The aqueous phase was extracted with ethyl acetate (40 mL × 3). The combined organic phase was washed with brine (50 mL × 3), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum. The residue was purified by silica gel column chromatography (eluting with a gradient from 2:1 to 1:1 petroleum ether:ethyl acetate) to afford 2-(1-(tert- butoxycarbonyl)piperidin-4-yl)-6-(cyclopropylmethoxy)-2H-indazole-5-carboxylic acid (0.7 g, 1.68 mmol, 75% yield) as a light yellow solid.MS (ESI) m/z: 416.1 [M+H]+.1H NMR (400 MHz, CDCl3) δ = 11.21 - 11.60 (m, 1 H) 8.72 (s, 1 H) 8.08 (s, 1 H) 7.07 (s, 1 H) 4.53 (tt, J=11.6, 4.0 Hz, 1 H) 4.23 - 4.43 (m, 2 H) 4.07 - 4.12 (m, 2 H) 2.88 - 3.02 (m, 2 H) 2.21 - 2.29 (m, 2 H) 2.06 - 2.16 (m, 2 H) 1.49 (s, 9 H) 1.43 (m, 1 H) 0.76 - 0.81 (m, 2 H) 0.47 (q, J=4.8 Hz, 2 H). Step 5: tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3-ylcarbamoyl)-2H- indazol-2-yl)piperidine-1-carboxylate
Figure imgf000124_0001
To a solution of 2-(1-(tert-butoxycarbonyl)piperidin-4-yl)-6-(cyclopropylmethoxy)-2H- indazole-5-carboxylic acid (0.65 g, 1.56 mmol, 1 eq) and pyrazolo[1,5-a]pyrimidin-3-amine (230.84 mg, 1.72 mmol, 1.1 eq) in pyridine (10 mL) was added 1-(3-dimethylaminopropyl)-3- ethylcarbodiimide hydrochloride (899.72 mg, 4.69 mmol, 3 eq). The reaction was stirred at 50 °C for 12 h. The mixture was concentrated to give a residue. The residue was purified by silica gel column chromatography eluted with a gradient from 1:1 to 1:4 petroleum ether:ethyl acetate to afford tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3- ylcarbamoyl)-2H-indazol-2-yl)piperidine-1-carboxylate (0.8 g, 1.49 mmol, 95% yield) as a yellow solid. MS (ESI) m/z: 532.1 [M+H]+.1H NMR (400 MHz, CDCl3) δ =10.82 (s, 1 H) 9.04 (s, 1 H) 8.82 (s, 1 H) 8.60 (dd, J=7.2, 1.6 Hz, 1 H) 8.33 (dd, J=3.6, 1.6 Hz, 1 H) 8.06 (s, 1 H) 7.07 (s, 1 H) 6.77 (dd, J=7.2, 3.6 Hz, 1 H) 4.53 (tt, J=11.6, 4.0 Hz, 1 H) 4.33 (br d, J=6.0 Hz, 2 H) 4.08 - 4.12 (m, 2 H) 2.95 (br s, 2 H) 2.26 (m, 2 H) 2.06 - 2.17 (m, 2 H) 1.66 (td, J=7.2, 4.8 Hz, 1 H) 1.49 (s, 9 H) 0.76 - 0.82 (m, 2 H) 0.51 (q, J=4.8 Hz, 2 H). Step 6: 6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H- indazole-5-carboxamide
Figure imgf000125_0001
To a solution of tert-butyl 4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3- ylcarbamoyl)-2H-indazol-2-yl)piperidine-1-carboxylate (0.3 g, 564.33 mmol, 1 eq) in dichloromethane (3 mL) was added a 4M solution of hydrochloric acid in methanol (6 mL). The reaction was stirred at 25 °C for 1 h. The reaction mixture was concentrated to give a residue. The residue was dissolved in dichloromethane /methyl alcohol =10/1 (20 mL) and stirred at 25 °C until homogeneous, then ammonium hydroxide (3 mL) and water (5 mL) were added and the mixture was allowed to stir at 25 °C for 10 min. The resulting mixture was concentrated under reduced pressure and the resulting suspension was filtered and washed with water (5 mL x 3) and acetonitrile (8 mL x 3). The collected cake was dried yielding 6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H- indazole-5-carboxamide (210 mg, 486.69 μmol, 86% yield) as a yellow solid which was used in the next step without further purification. MS (ESI) m/z: 432.2 [M+H]+. Step 7: tert-butyl 3-((4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3-ylcarbamoyl)- 2H-indazol-2-yl)piperidin-1-yl)methyl)-3-fluoroazetidine-1-carboxylate
Figure imgf000125_0002
To a solution of 6-(cyclopropylmethoxy)-2-(piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin- 3-yl)-2H-indazole-5-carboxamide (160 mg, 370.81 mmol, 1 eq) and tert-butyl 3- (bromomethyl)-3-fluoro-azetidine-1-carboxylate (198.84 mg, 741.62 mmol, 2 eq) in dimethyl sulfoxide (5 mL) was added N,N-diisopropylethylamine (143.77 mg, 1.11 mmol, 193.76 mL, 3 eq). The reaction was stirred at 90 °C for 12 h. The mixture was poured into ice-water (30 mL). The aqueous phase was extracted with dichloromethane (20 mL × 3). The combined organic phase was washed with brine (30 mL × 3), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum. The residue was purified by preparative TLC (eluted with a 10:1 solution of dichloromethane:methyl alcohol) to afford tert-butyl 3-((4-(6- (cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin-3-ylcarbamoyl)-2H-indazol-2-yl)piperidin-1- yl)methyl)-3-fluoroazetidine-1-carboxylate (170 mg, 274.77 mmol, 74% yield) as a brown solid. MS (ESI) m/z: 619.3 [M+H]+. Step 8: 6-(cyclopropylmethoxy)-2-(1-((3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-N- (pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole-5-carboxamide
Figure imgf000126_0001
To a solution of tert-butyl 3-((4-(6-(cyclopropylmethoxy)-5-(pyrazolo[1,5-a]pyrimidin- 3-ylcarbamoyl)-2H-indazol-2-yl)piperidin-1-yl)methyl)-3-fluoroazetidine-1-carboxylate (150 mg, 242.44 mmol, 1 eq) in dichloromethane (4 mL) was added trifluoroacetic acid (6.16 g, 54.02 mmol, 4 mL, 222.83 eq). The reaction was stirred at 25 °C for 1 h. The mixture was concentrated to yield 6-(cyclopropylmethoxy)-2-(1-((3-fluoroazetidin-3-yl)methyl)piperidin-4- yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole-5-carboxamide (150 mg, crude, trifluoroacetate) as a brown gum which was used in subsequent reactions without further purification. MS (ESI) m/z: 519.2 [M+H]+. Step 9: 6-(cyclopropylmethoxy)-2-(1-((1-(2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-5- yl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole- 5-carboxamide
Figure imgf000126_0002
To a solution of 6-(cyclopropylmethoxy)-2-(1-((3-fluoroazetidin-3-yl)methyl)piperidin- 4-yl)-N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole-5-carboxamide (150 mg, 237.11 mmol, 1 eq, trifluoroacetate, crude) in dimethyl sulfoxide (6 mL) was added N,N- diisopropylethylamine (91.94 mg, 711.34 mmol, 123.90 mL, 3 eq) and 2-(2,6-dioxo-3- piperidyl)-5-fluoro-isoindoline-1,3-dione (98.24 mg, 355.67 mmol, 1.5 eq). The reaction was stirred at 80°C for 12 h. The mixture was poured into ice-water (40 mL). The aqueous phase was extracted with dichloromethane (20 mL × 3). The combined organic phase was washed with brine (30 mL × 2), dried with anhydrous sodium sulfate, filtered and concentrated under vacuum. The residue was purified by prep-TLC (dichloromethane /methyl alcohol=10/1) to give the crude product. The crude product was further purified by semi-preparative reverse phase HPLC (column: Phenomenex Synergi C18150*25mm* 10μm;mobile phase: [water(formic acid)-acetonitrile]; B%: 14-44% to afford 6-(cyclopropylmethoxy)-2-(1-((1-(2- (2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-5-yl)-3-fluoroazetidin-3-yl)methyl)piperidin-4-yl)- N-(pyrazolo[1,5-a]pyrimidin-3-yl)-2H-indazole-5-carboxamide (85.4 mg, 109.12 mmol, 46.0% yield, 99% purity as a yellow solid. MS (ESI) m/z: 775.2 [M+H]+.1H NMR (400 MHz, DMSO- d6) δ =11.08 (s, 1 H) 10.72 (s, 1 H) 9.07 (dd, J=7.2, 1.6 Hz, 1 H) 8.80 (s, 1 H) 8.59 (d, J=4.4 Hz, 2 H) 8.45 - 8.52 (m, 1 H) 7.69 (d, J=8.4 Hz, 1 H) 7.17 (s, 1 H) 7.03 (dd, J=7.2, 4.0 Hz, 1 H) 6.92 (d, J=2.0 Hz, 1 H) 6.78 (dd, J=8.4, 2.0 Hz, 1 H) 5.07 (dd, J=12.8, 5.6 Hz, 1 H) 4.40 - 4.54 (m, 1 H) 4.18 - 4.29 (m, 3 H) 4.14 (d, J=7.2 Hz, 3 H) 3.03 - 3.11 (m, 2 H) 3.00 (s, 1 H) 2.82 - 2.95 (m, 2 H) 2.55 - 2.62 (m, 2 H) 2.40 - 2.45 (m, 2 H) 2.08 - 2.18 (m, 4 H) 1.97 - 2.04 (m, 1 H) 1.52 - 1.62 (m, 1 H) 0.68 - 0.75 (m, 2 H) 0.48 (m, 2 H). Table 5. The following compound may be prepared in an analogous fashion as described for the synthesis of Example 41.
Figure imgf000127_0001
Biological Activity of Exemplary Compounds IRAK4 ELISA Protocol Reagents: Human IRAK4 Matched Antibody Pair Kit (Abcam ab218182) and ELISA Accessory Pack (Abcam ab210905). Cell treatment and lysis: 800,000 PBMC cells were seeded at 2×106/ml in 96-well U- bottom deep-well plates, 400 μL per well, and treated with compound the same day. Incubation proceeded overnight. Cell lysate was collected and analyzed by ELISA for IRAK4 levels. Table 6. PBMC Degradation Data. PBMC DC90: A, B, C, or D. According to the code, A represents a DC90 value <10.0 nM; B represents a DC90 value ≥10.0 nM and <25.0 nM; C represents a DC90 value ≥25.0 nM and <50 nM; D represents a DC90 value ≥50 nM. PBMC DC50: A, B, C, or D. According to the code, A represents a DC50 value <1.0 nM; B represents a DC50 value ≥1.0 nM and <5.0 nM; C represents a DC50 value ≥5.0 nM and <10 nM; D represents a DC50 value ≥10 nM. PBMC Dmax: A, B, C, or D. According to the code, A represents a Dmax value ≥90; B represents a Dmax value ≥80 and <90; C represents a Dmax value ≥70 and <80; D represents a Dmax value <70.
Figure imgf000128_0001
Figure imgf000129_0001
IL-1β, LPS, or R848 stimulated IL6 inhibition and IL-1β stimulated IL8 inhibition assay Human PBMC cells were seeded at 2.5x106 cells/mL, treated with compound overnight, and stimulated with the EC50 concentration of each stimulant (either IL-1B, LPS, or R848) determined for each donor. After 24hrs, media was collected and analyzed by MSD for IL6 and/or IL8 levels. Table 7. Inhibition of IL6 in PBMCs after stimulation with LPS and R848 LPS stimulated IL6 inhibition/ R848 stimulated IL6 inhibition IC50: A, B, C, or D. According to the code, A represents an IC50 value <10.0 nM; B represents an IC50 value ≥10.0 nM and <50.0 nM; C represents an IC50 value ≥50.0 nM and <100 nM; D represents an IC50 value ≥100 nM. LPS stimulated IL6 inhibition/ R848 stimulated IL6 inhibition Ymax: A, B, C, or D. According to the code, A represents a Ymax value ≥90; B represents a Ymax value ≥80 and <90; C represents a Ymax value ≥70 and <80; D represents a Ymax value <70.
Figure imgf000130_0001

Claims

CLAIMS 1. A compound of Formula I:
Figure imgf000131_0001
or a pharmaceutically acceptable salt thereof, wherein ITM is:
Figure imgf000131_0002
wherein A is C(O)N(Ra) or N(Ra)C(O); W* is N, C, or CH; W1 and W6 are each independently C(O), O, N, CR2, C(R2)2, or NR2; W2, W3, W4, W5, W7, W8, W9, W10, W11, W12, W13, W14, and W15 are each independently selected from C, N, CR2, C(R2)2, and NR2, wherein at least three of W2, W3, W4, and W5 are C, C(R2)2, or CR2, and wherein at least four of W7, W8, W9, W10, W11, W12, W13, W14, and W15 are C, CR2, or C(R2)2; Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, C1-6 haloalkyl, OC1-6 alkyl, C3-10 cycloalkyl, C6-10 aryl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, C1-6 haloalkyl, OC1-6 alkyl, C3-10 cycloalkyl, C6-10 aryl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, three, four, or five R3; each R2 is independently selected from H, halo, C1-6 alkyl, C1-6 haloalkyl; each R3 is independently selected from H, halo, C1-6 alkyl, C1-6 haloalkyl, C3-10 cycloalkyl, C6-10 aryl, and 3–10 membered heterocycloalkyl; is a single bond or a double bond; and
Figure imgf000132_0003
is the point of attachment to LNK; LNK is:
Figure imgf000132_0001
wherein n is 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10; each L is independently selected from C(RL)2, C(O), O, S, S(O)2, N(RL), C3-10 cycloalkyl, 3–10 membered heterocycloalkyl, and C6-10 aryl, wherein C3-10 cycloalkyl, 3–10 membered heterocycloalkyl, and C6-10 aryl are optionally substituted with one, two, three, four, or five RLa; each RL is independently selected from H, halo, C1-6 alkyl, C1-6 haloalkyl, OC1-6 alkyl, N(C1-6 alkyl)2, NH2, OH, SH, CN, and C3-10 cycloalkyl; each RLa is independently selected from H, halo, and C1-6 alkyl; and CLM is selected from Formulae CLM-I, CLM-II, CLM-III, and CLM-IV:
Figure imgf000132_0002
Figure imgf000133_0002
wherein Q1 and Q4 are each independently selected from CR13, C(R13)2, C(O), N, and NH; Q2 and Q3 are each independently selected from CR13 and N; R4, R6, R7, R9, and R11 are each independently selected from H, C1-6 alkyl, OC1-6 alkyl, and C1-6 haloalkyl; R5, R8, R10, and R12 are selected from H, halo, =O, C1-6 alkyl, OC1-6 alkyl, and C1-6 haloalkyl; each R13 is individually selected from H, C1-6 alkyl, C1-6 haloalkyl, and OC1-6 alkyl; ring B is selected from C6 aryl, 6-membered heteroaryl, and 6-membered heterocycloalkyl; and
Figure imgf000133_0001
is the point of attachment to LNK. 2. The compound of claim 1, wherein A is C(O)N(Ra) or N(Ra)C(O); W* is N or C; W1 and W6 are each independently C(O), N, CR2, or C(R2)2; W2, W3, W4, W5, W7, W8, W9, W10, W11, W12, W13, W14, and W15 are each independently selected from C, N, CR2, C(R2)2, and NR2, wherein at least three of W2, W3, W4, and W5 are C, C(R2)2, or CR2 and wherein at least five of W7, W8, W9, W10, W11, W12, W13, W14, and W15 are C, CR2, or C(R2)2; Ra is selected from H, C1-6 alkyl, and C1-6 haloalkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 3–10 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R2 is independently selected from H and C1-6 alkyl; each R3 is independently selected from H, C1-6 alkyl, C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl; n is 1, 2, 3, 4, 5, 6, 7, or 8; each L is independently selected from C(RL)2, N(RL), C3-10 cycloalkyl, and 3–10 membered heterocycloalkyl, wherein C3-10 cycloalkyl, and 3-10 membered heterocycloalkyl, are optionally substituted with one, two, or three RLa; each RL is independently selected from H, halo, and C1-6 alkyl; each RLa is independently selected from H, halo, and C1-6 alkyl; Q1 and Q4 are each independently selected from CR13, C(R13)2, C(O), and N; Q2 and Q3 are each independently selected from CR13 and N; R4, R6, R7, R9, and R11 are each independently selected from H and C1-6 alkyl; R5, R8, R10, and R12 are selected from H, halo, =O, and C1-6 alkyl; each R13 is individually selected from H and C1-6 alkyl; and ring B is selected from C6 aryl, 6-membered heteroaryl, and 6-membered heterocycloalkyl. 3. The compound of claim 1 or claim 2, wherein A is C(O)N(Ra) or N(Ra)C(O); W* is N or C; W1 and W6 are each independently C(O), N, CR2, or C(R2)2; W2, W3, W4, W5, W7, W8, W9, W10, W11, W12, W13, W14, and W15 are each independently selected from C, N, CR2, C(R2)2, and NR2, wherein at least three of W2, W3, W4, and W5 are C, CR2, or C(R2)2 and wherein at least six of W7, W8, W9, W10, W11, W12, W13, W14, and W15 are C, CR2, or C(R2)2; Ra is selected from H and C1-6 alkyl; R1 is selected from H, C1-6 alkyl, OC1-6 alkyl, and 4–7 membered heterocycloalkyl, wherein C1-6 alkyl, OC1-6 alkyl, and 4–7 membered heterocycloalkyl are optionally substituted with one, two, or three R3; each R2 is independently selected from H and C1-6 alkyl; and each R3 is independently selected from H, C1-6 alkyl, C3-6 cycloalkyl, and 3–6 membered heterocycloalkyl; n is 1,
2,
3, 4, 5, or 6; each L is independently selected from C(RL)2, N(RL), C3-6 cycloalkyl, and 4–7 membered heterocycloalkyl, wherein C3-6 cycloalkyl, and 4–7 membered heterocycloalkyl, are optionally substituted with one, two, or three RLa; each RL is independently selected from H, halo, and C1-6 alkyl; each RLa is independently selected from H and halo; Q1 and Q4 are each independently selected from CR13, C(R13)2, C(O), and N; Q2 and Q3 are each independently selected from CR13 and N; R4, R6, R7, R9, and R11 are each independently selected from H and C1-6 alkyl; R5, R8, R10, and R12 are selected from H, halo, =O, and C1-6 alkyl; each R13 is individually selected from H and C1-6 alkyl; and ring B is selected from C6 aryl, 6-membered heteroaryl, and 6-membered heterocycloalkyl.
4. The compound of any one of claims 1–3, wherein the ITM of Formula ITM-I is:
Figure imgf000135_0001
wherein at least two of W1, W2, W5, and W6 are C, CR2, or C(R2)2.
5. The compound of any one of claims 1-4, wherein the ITM of Formula ITM-I is:
Figure imgf000135_0002
Figure imgf000136_0002
or a pharmaceutically acceptable salt thereof.
6. The compound of any one of claims 1–5, wherein the compound of Formula I is a compound of Formulae Ia or Ib:
Figure imgf000136_0001
or a pharmaceutically acceptable salt thereof.
7. The compound of any one of claims 1-5, wherein the compound of Formula I is a compound of Formulae Ic, Id, or Ie:
Figure imgf000137_0001
or a pharmaceutically acceptable salt thereof, wherein ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl.
8. The compound of any one of claims 1-5, wherein the compound of Formula I is a compound of Formulae If or Ig:
Figure imgf000138_0001
or a pharmaceutically acceptable salt thereof, wherein ring B is selected from phenyl, pyridinyl, pyrimidinyl, triazinyl, piperazinyl, and piperidinyl.
9. The compound of any one of claims 1-8, wherein the LNK of Formula LNK is:
Figure imgf000138_0002
Figure imgf000139_0002
or a pharmaceutically acceptable salt thereof, wherein Q5, Q6, Q7, Q8, Q9, and Q10 are each individually CH or N; W16 and W17 are selected from a bond, C(R14)2, C(O), and N(R15); each R14 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; each R15 is individually selected from H, C1-6 alkyl, and OC1-6 alkyl; R16 is selected from H, halo, CN, C1-6 alkyl, and OC1-6 alkyl; p1, p2, p5, and p6 are 1, 2, or 3; p3, p4, and p7 are 0, 1, 2, or 3; and
Figure imgf000139_0003
is the point of attachment to ILM or CLM.
10. The compound of any one of claims 1–6 and 9, wherein the compound of Formula I is a compound of Formulae Ih, Ii, or Ij:
Figure imgf000139_0001
Figure imgf000140_0001
or a pharmaceutically acceptable salt thereof.
11. The compound of any one of claims 1–6 and 9, wherein the compound of Formula I is a compound of Formulae Ik, Im, Io, or Ip:
Figure imgf000140_0002
Figure imgf000141_0001
or a pharmaceutically acceptable salt thereof.
12. The compound of any one of claims 1–5, 8, and 9, wherein the compound of Formula I is a compound of Formulae Iq or Ir:
Figure imgf000142_0001
or a pharmaceutically acceptable salt thereof.
13. The compound of any one of claims 1-4 and 9, wherein W* is C.
14. The compound of any one of claims 1-4 and 9, wherein W* is N.
15. The compound of any one of claims 1-4, 9, 13, and 14, wherein W1 and W6 are each independently selected from CH, CH2, C(O), and N.
16. The compound of any one of claims 1-4, 9, and 13-15, wherein W1 is C(O).
17. The compound of any one of claims 1-4, 9, and 13-15, wherein W1 is N.
18. The compound of any one of claims 1–4, 9, and 13–15, wherein W6 is CH.
19. The compound of any one of claims 1–4, 9, and 13–15, wherein W6 is CH2.
20. The compound of any one of claims 1–19, wherein A is C(O)N(Ra).
21. The compound of any one of claims 1–19, wherein A is N(Ra)C(O).
22. The compound of any one of claims 1–9 and 11–21, wherein ring B is selected from phenyl, pyridinyl, and piperazinyl.
23. The compound of any one of claims 1–9 and 11–21, wherein ring B is phenyl.
24. The compound of any one of claims 1–9 and 11–21, wherein ring B is pyridinyl.
25. The compound of any one of claims 1–9 and 11–21, wherein ring B is piperazinyl.
26. The compound of any one of claims 1–25, wherein R1 is OC1-6 alkyl or 4–7 heterocycloalkyl and R3 is C1-6 alkyl or 3–6 membered heterocycloalkyl.
27. The compound of any one of claims 1–7, 9–11, and 13–26, wherein R4 is H.
28. The compound of any one of claims 1–7, 9–11, and 13–27, wherein R5 is H.
29. The compound of any one of claims 1–7, 9–11, and 13–27, wherein R5 is halo.
30. The compound of any one of claims 1–7, 9–11, and 13–27, wherein R5 is OC1-6 alkyl.
31. The compound of any one of claims 1–6, 8–10, and 13–30, wherein R6 is H.
32. The compound of any one of claims 1–6, 8–10, and 13–31, wherein R7 is H.
33. The compound of any one of claims 1–6, 8–10, and 13–32, wherein R8 is H or halo.
34. The compound of any one of claims 1–6, 8–10, and 13–32, wherein R8 is halo.
35. The compound of any one of claims 1–5, 7–9, and 11–34, wherein R9 is H.
36. The compound of any one of claims 1–5, 7–9, and 11–35, wherein R10 is H.
37. The compound of any one of claims 1–5, 7–9, and 11–35, wherein R10 is halo.
38. The compound of any one of claims 1–5, 7–9, and 11–35, wherein R10 is =O.
39. The compound of any one of claims 1–5, 7–9, and 11–35, wherein R10 is OC1-6 alkyl.
40. The compound of any one of claims 1–5, 7–9, and 11–39, wherein R11 is H.
41. The compound of any one of claims 1–5, 7–9, and 11–40, wherein R12 is H.
42. The compound of any one of claims 1–5, 7–9, and 11–41, wherein Q1 is C(O) or CH2.
43. The compound of any one of claims 1–5, 7–9, and 11–42, wherein Q2 is N or CH.
44. The compound of any one of claims 1–5, 7–9, and 11–43, wherein Q3 is N or CH.
45. The compound of any one of claims 1–5, 7–9, and 11–44, wherein Q4 is N or CH.
46. The compound of any one of claims 9–45, wherein Q5 is N or CH.
47. The compound of any one of claims 9–46, wherein Q6 is N or CH.
48. The compound of any one of claims 9–47, wherein Q7 is N or CH.
49. The compound of any one of claims 9, 10, and 13–48, wherein Q8 is N or CH.
50. The compound of any one of claims 9, 10, and 13–49, wherein Q9 is N or CH.
51. The compound of any one of claims 9 and 11–50, wherein Q10 is N or CH.
52. The compound of any one of claims 9 and 11–51, wherein W16 is CH2, NH, or N(CH3).
53. The compound of any one of claims 9 and 11–52, wherein W17 is a bond.
54. The compound of any one of claims 9 and 11–52, wherein W17 is C(O).
55. The compound of any one of claims 9–54, wherein R16 is H.
56. The compound of any one of claims 9–54, wherein R16 is halo.
57. The compound of any one of claims 9–56, wherein p1 is 1.
58. The compound of any one of claims 9–56, wherein p1 is 2.
59. The compound of any one of claims 9–58, wherein p2 is 1.
60. The compound of any one of claims 9–58, wherein p2 is 2.
61. The compound of any one of claims 9-60, wherein p3 is 0.
62. The compound of any one of claims 9-60, wherein p3 is 1.
63. The compound of any one of claims 9-60, wherein p3 is 2.
64. The compound of any one of claims 9, 10, and 13–63, wherein p4 is 1.
65. The compound of any one of claims 9, 10, and 13–64, wherein p5 is 1.
66. The compound of any one of claims 9, 10, and 13–64, wherein p5 is 2.
67. The compound of any one of claims 9, 10, and 13–66, wherein p6 is 1.
68. The compound of any one of claims 9, 10, and 13–66, wherein p6 is 2.
69. The compound of any one of claims 9, and 11–68, wherein p7 is 1.
70. The compound of any one of claims 1–69, wherein Ra is H.
71. The compound of any one of claims 1–69, wherein Ra is C1-6 alkyl.
72. The compound of any one of claims 1-71, wherein LNK is selected from
Figure imgf000145_0001
Figure imgf000146_0001
or a pharmaceutically acceptable salt thereof.
73. The compound of any one of claims 1-72, wherein the compound of Formula I is selected from
Figure imgf000146_0002
Figure imgf000147_0001
Figure imgf000148_0001
Figure imgf000149_0001
Figure imgf000150_0001
Figure imgf000151_0001
Figure imgf000152_0001
Figure imgf000153_0001
or a pharmaceutically acceptable salt thereof.
74. A pharmaceutical composition comprising the compound of any one of claims 1-73, and one or more pharmaceutically acceptable excipients.
75. The pharmaceutical composition of claim 74 further comprising an additional bioactive agent, wherein the bioactive agent is an anti-cancer agent, an anti-inflammatory agent, an anti-neurodegenerative agent, or an anti-immunological agent.
76. A method of treating a disease or disorder, comprising administering a subject an effective amount of the compound of any one of claims 1–73 or an effective amount of the pharmaceutical composition of claim 74 or 75, wherein the disease or disorder is a neurodegenerative disease or disorder, an inflammatory disease or disorder, an immunological disease or disorder, and/or a cancer associated with signaling through signaling pathways regulated by IRAK-4 and/or the myddosome complex.
77. The method of claim 76, wherein the neurodegenerative and/or neuroinflammatory disease or disorder is stroke, traumatic brain injury, optic neuritis, Alzheimer’s disease, Parkinson’s disease, amyotrophic lateral sclerosis, Huntington's disease, cerebral ischemia, and neurodegenerative disease caused by traumatic injury, glutamate neurotoxicity, hypoxia, epilepsy, or graft versus host disease.
78. The method of claim 76, wherein the inflammatory disease or disorder is ocular allergy, conjunctivitis, keratoconjunctivitis sicca, vernal conjunctivitis, allergic rhinitis, autoimmune hematological disorders (e.g., hemolytic anemia, aplastic anemia, pure red cell anemia and idiopathic thrombocytopenia), systemic lupus erythematosus, rheumatoid arthritis, polychondritis, scleroderma, Wegener granulamatosis, dermatomyositis, chronic active hepatitis, myasthenia gravis, Stevens-Johnson syndrome, idiopathic sprue, autoimmune inflammatory bowel disease (e.g., ulcerative colitis and Crohn’s disease), irritable bowel syndrome, celiac disease, periodontitis, hyaline membrane disease, kidney disease, glomerular disease, alcoholic liver disease, multiple sclerosis, inflammation associated with or caused by multiple sclerosis, endocrine opthalmopathy, Grave's disease, sarcoidosis, alveolitis, chronic hypersensitivity pneumonitis, primary biliary cirrhosis, uveitis (anterior and posterior), Sjogren’s syndrome, interstitial lung fibrosis, psoriatic arthritis, systemic juvenile idiopathic arthritis, nephritis, vasculitis, diverticulitis, interstitial cystitis, glomerulonephritis (e.g., including idiopathic nephrotic syndrome or minimal change nephropathy), chronic granulomatous disease, endometriosis, leptospirosis renal disease, glaucoma, retinal disease, headache, pain, complex regional pain syndrome, cardiac hypertrophy, muscle wasting, catabolic disorders, obesity, fetal growth retardation, hypercholesterolemia, heart disease, chronic heart failure, mesothelioma, anhidrotic ecodermal dysplasia, Behcet’s disease, incontinentia pigmenti, Paget’s disease, pancreatitis, hereditary periodic fever syndrome, asthma, acute lung injury, acute respiratory distress syndrome, eosinophilia, hypersensitivities, anaphylaxis, fibrositis, gastritis, gastroenteritis, nasal sinusitis, ocular allergy, silica induced diseases, chronic obstructive pulmonary disease (COPD), cystic fibrosis, acid-induced lung injury, pulmonary hypertension, polyneuropathy, cataracts, muscle inflammation in conjunction with systemic sclerosis, inclusion body myositis, myasthenia gravis, thyroiditis, Addison’s disease, lichen planus, appendicitis, atopic dermatitis, asthma, allergy, blepharitis, bronchiolitis, bronchitis, bursitis, cervicitis, cholangitis, cholecystitis, chronic graft rejection, colitis, conjunctivitis, cystitis, dacryoadenitis, dermatitis, juvenile rheumatoid arthritis, dermatomyositis, encephalitis, endocarditis, endometritis, enteritis, enterocolitis, epicondylitis, epididymitis, fasciitis, Henoch-Schonlein purpura, hepatitis, hidradenitis suppurativa, immunoglobulin A nephropathy, interstitial lung disease, laryngitis, mastitis, meningitis, myelitis myocarditis, myositis, nephritis, oophoritis, orchitis, osteitis, otitis, pancreatitis, parotitis, pericarditis, peritonitis, pharyngitis, pleuritis, phlebitis, pneumonitis, pneumonia, polymyositis, proctitis, prostatitis, pyelonephritis, rhinitis, salpingitis, sinusitis, stomatitis, synovitis, tendonitis, tonsillitis, ulcerative colitis, vasculitis, vulvitis, alopecia areata, erythema multiforma, dermatitis herpetiformis, scleroderma, vitiligo, hypersensitivity angiitis, urticaria, bullous pemphigoid, pemphigus vulgaris, pemphigus foliaceus, paraneoplastic pemphigus, epidermolysis bullosa acquisita, acute and chronic gout, chronic gouty arthritis, psoriasis, psoriatic arthritis, rheumatoid arthritis, Cryopyrin Associated Periodic Syndrome (CAPS), or osteoarthritis.
79. The method of claim 76, wherein the immunological disease or disorder is multiple sclerosis, rheumatoid arthritis, spondyloarthropathy, systemic lupus erythematosus, antibody-mediated inflammatory or autoimmune disease, graft-versus-host disease, sepsis, diabetes, psoriasis, atheroma, atherosclerosis, Sjogren’s syndrome, progressive systemic sclerosis, scleroderma, acute coronary syndrome, ischemia reperfusion, Crohn’s disease, endometriosis, glomerulonephritis, myasthenia gravis, idiopathic pulmonary fibrosis.
80. The method of claim 76, wherein the cancer is squamous-cell carcinoma, basal cell carcinoma, adenocarcinoma, hepatocellular carcinomas, and renal cell carcinomas, cancer of the bladder, bowel, breast, cervix, colon, esophagus, head, kidney, liver, lung, neck, ovary, pancreas, prostate, and stomach; leukemias; benign and malignant lymphomas, particularly Burkitt’s lymphoma and Non-Hodgkin’s lymphoma; benign and malignant melanomas; myeloproliferative diseases; sarcomas, including Ewing’s sarcoma, hemangiosarcoma, Kaposi’s sarcoma, liposarcoma, myosarcomas, peripheral neuroepithelioma, synovial sarcoma, gliomas, astrocytomas, oligodendrogliomas, ependymomas, gliobastomas, neuroblastomas, ganglioneuromas, gangliogliomas, medulloblastomas, pineal cell tumors, meningiomas, meningeal sarcomas, neurofibromas, and Schwannomas; bowel cancer, breast cancer, prostate cancer, cervical cancer, uterine cancer, lung cancer, ovarian cancer, testicular cancer, thyroid cancer, astrocytoma, esophageal cancer, pancreatic cancer, stomach cancer, liver cancer, colon cancer, melanoma; carcinosarcoma, Hodgkin’s disease, Wilms' tumor and teratocarcinomas, T- lineage Acute lymphoblastic Leukemia (T-ALL), T-lineage lymphoblastic Lymphoma (T-LL), Peripheral T-cell lymphoma, Adult T-cell Leukemia, Pre-B ALL, Pre-B Lymphomas, Large B- cell Lymphoma, Burkitt’s Lymphoma, B-cell ALL, Philadelphia chromosome positive ALL, or Philadelphia chromosome positive CML.
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