WO2024006863A9 - Lipid nanoparticle formulations for vaccines - Google Patents
Lipid nanoparticle formulations for vaccines Download PDFInfo
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- WO2024006863A9 WO2024006863A9 PCT/US2023/069303 US2023069303W WO2024006863A9 WO 2024006863 A9 WO2024006863 A9 WO 2024006863A9 US 2023069303 W US2023069303 W US 2023069303W WO 2024006863 A9 WO2024006863 A9 WO 2024006863A9
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- A61K9/00—Medicinal preparations characterised by special physical form
- A61K9/48—Preparations in capsules, e.g. of gelatin, of chocolate
- A61K9/50—Microcapsules having a gas, liquid or semi-solid filling; Solid microparticles or pellets surrounded by a distinct coating layer, e.g. coated microspheres, coated drug crystals
- A61K9/51—Nanocapsules; Nanoparticles
- A61K9/5107—Excipients; Inactive ingredients
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- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K39/12—Viral antigens
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K39/39—Medicinal preparations containing antigens or antibodies characterised by the immunostimulating additives, e.g. chemical adjuvants
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- A—HUMAN NECESSITIES
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- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K9/00—Medicinal preparations characterised by special physical form
- A61K9/0012—Galenical forms characterised by the site of application
- A61K9/0019—Injectable compositions; Intramuscular, intravenous, arterial, subcutaneous administration; Compositions to be administered through the skin in an invasive manner
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
- A61P31/14—Antivirals for RNA viruses
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/51—Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/51—Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
- A61K2039/53—DNA (RNA) vaccination
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/555—Medicinal preparations containing antigens or antibodies characterised by a specific combination antigen/adjuvant
- A61K2039/55511—Organic adjuvants
- A61K2039/55555—Liposomes; Vesicles, e.g. nanoparticles; Spheres, e.g. nanospheres; Polymers
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/57—Medicinal preparations containing antigens or antibodies characterised by the type of response, e.g. Th1, Th2
- A61K2039/575—Medicinal preparations containing antigens or antibodies characterised by the type of response, e.g. Th1, Th2 humoral response
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- C12N2770/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses positive-sense
- C12N2770/00011—Details
- C12N2770/20011—Coronaviridae
- C12N2770/20034—Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2770/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses positive-sense
- C12N2770/00011—Details
- C12N2770/20011—Coronaviridae
- C12N2770/20071—Demonstrated in vivo effect
Definitions
- the field of the invention relates methods and lipid formulations suitable for forming RNA-based vaccines in lipid nanoparticles.
- RNA vaccines offer advantages over traditional vaccines in terms of safety and efficacy.
- RNA vaccines are subject to degradation by exonucleases and endonucleases in vivo without a delivery system, so they need a carrier.
- lipid nanoparticles are among the most frequently used vectors for in vivo RNA delivery.
- Lipid nanoparticles or LNP generally consist of different lipids, each serving distinct functions.
- These LNP can have a lipidic or aqueous core and may contain bilayer structures depending on the abundance of each type of lipids.
- the components of the LNP formulations are generally: ionizable cationic lipids, which spontaneously encapsulate negatively-charged mRNA via by a combination of attractive electrostatic interactions with RNA and hydrophobic interactions; neutral phospholipids to reduce charge-related toxicity and to maintain structure of the LNP; and cholesterol to stabilize the LNP and help with cell entry, and a lipid-conjugated polyethylene glycol (PEG).
- ionizable cationic lipids which spontaneously encapsulate negatively-charged mRNA via by a combination of attractive electrostatic interactions with RNA and hydrophobic interactions
- neutral phospholipids to reduce charge-related toxicity and to maintain structure of the LNP
- cholesterol to stabilize the LNP and help with cell entry
- PEG lipid-conjugated polyethylene glycol
- a lipid formulation capable of forming a lipid-based nanoparticle suitable for vaccines, the lipid formulation comprising an ionizable lipid to phospholipid ratio of 0.10 - 1.30 mokmol, in some embodiments, a ratio of 0.33 - 1.20 mokmol, in some embodiments, a ratio of 0.10 - 0.70 mokmol, and in some embodiments, a ratio of 0.40 - 0.70 mokmol.
- the lipid formulation further includes a nucleic acid payload.
- the nucleic acid payload is a nucleic acid vaccine element.
- the lipid formulation further comprises a stabilizer.
- the lipid formulation further comprises a sterol.
- the molar ratio of ionizable lipid to phospholipid is about 1.30, or about 1.29, or about 1.28, or about 1.27, or about 1.26, or about 1.25, or about 1.24, or about 1.23, or about 1.22, or about 1.21, or about 1.20, or about 1.19, or about 1.19, or about 1.18, or about 1.17, or about 1.16, or about 1.15, or about 1.14, or about 1.13, or about 1.12, or about 1.11, or about 1.10, or about 1.09, or about 1.08, or about 1.07, or about 1.06, or about 1.05, or about 1.04, or about 1.03, or about 1.02, or about 1.01, or about 1.00, or about 0.99, or about 0.98, or about 0.97, or about 0.96, or about 0.95, or about 0.94, or about 0.93, or about 0.92, or about 0.91, or about 0.90, or about 0.89, or about 0.88, or about 0.87, or about 0.86,
- the molar ratio or ionizable lipid to phospholipid is about 0.70, or about 0.69, or about 0.68, or about 0.67, or about 0.66, or about 0.65, or about 0.64, or about 0.63, or about 0.62, or about 0.61, or about 0.60, or about 0.59, or about 0.58, or about 0.57, or about 0.56, or about 0.55, or about 0.54, or about 0.53, or about 0.52.
- the ionizable lipid to phospholipid ratio is about 0.51, or about 0.50, or about 0.49, or about 0.48, or about 0.47, or about 0.46, or about 0.45, or about 0.44, or about 0.43, or about 0.42, or about 0.41, or about 0.40. [0013] In embodiments, the ionizable lipid to phospholipid ratio is about 0.39, or about 0.38, or about 0.37, or about 0.36, or about 0.35, or about 0.34, or about 0.33, or about 0.32, or about 0.31, or about 0.30.
- the ionizable lipid to phospholipid ratio is about 0.29, or about 0.28, or about 0.27, or about 0.26, or about 0.25, or about 0.24, or about 0.23, or about 0.22, or about 0.21, or about 0.20.
- the ionizable lipid to phospholipid ratio is about 0.19, or about 0.18, or about 0.17, or about 0.16, or about 0.15, or about 0.14, or about 0.13, or about 0.12, or about 0.11, or about 0.10.
- lipid formulation wherein an ionizable lipid makes up about 20-40 mol% of the total composition.
- a lipid formulation wherein the ionizable lipid comprises a mixture of ionizable lipids.
- the phospholipid makes up about 25-60 mol% of the total formulation.
- sterol such as cholesterol or cholesteryl hemisuccinate comprises from 15-25 mol% of the total composition.
- lipid formulation wherein the stabilizer comprises from 0.0-2.5 mole % of the total volume of the lipid formulation.
- a lipid formulation for encapsulating a nucleic acid payload in a nanoparticle including an ionizable lipid, a sterol, and a phospholipid, wherein the phospholipid content is between 25- 60% of the nanoparticle, and the ionizable to phospholipid molar ratio is from 0.33 to 1.2.
- the nanoparticle is a vaccine.
- the stabilizer is a PEG lipid, in some embodiments PEG-DMPG.
- the phospholipid is DSPC.
- the ionizable lipid is selected from the group consisting of PNI 516, PNI 550, PNI 127, PNI 560, PNI 580, PNI 659, PNI 721, PNI 722, PNI 726, PNI 728, and PNI 730.
- the sterol is cholesterol.
- a vaccine including a lipid formulation for encapsulating a nucleic acid payload, the vaccine including an ionizable lipid, a sterol, and a phospholipid, and wherein the phospholipid content is between 25-60% of the vaccine, and the ionizable to phospholipid molar ratio is from 0.33 to 1.2.
- the nucleic acid payload codes for an antigen selected from coronavirus spike protein and influenza hemagglutinin protein.
- the nucleic acid payload is derived from influenza virus mRNA. In embodiments, the nucleic acid payload is derived from coronavirus.
- Figure l is a graphical representation of SARsCOV-2 protein expression dose response following Vaccmixb PNI516 and V46-PNI 516 transfection in BHK 570 cells.
- the dose response curve was created by with RNA doses of from 1000 to 0.49 ng/ mL;
- Figure 2 is a graphical representation of SARsCOV-2 protein expression dose response following LNP transfection in BHK 570 cells with various PNI516 LNP formulations containing nCoV PNI A5 saRNA from 1000 to 0.49 ng/ mL;
- Figure 3 is a scatter plot graph of an ELISA of SARsCOV-2 spike protein specific IgG expression in BALB/c mouse serum 21 days post intramuscular LNP injection at 1 ug/mouse;
- Figure 4 is a reproduction of Cryo-TEM imaging for A) Vaccmixb PNI 516, B) V46-PNI 516, and C) V47-PNI 516 LNP.
- Figure 5 is a graphical representation of in vitro transfection ability of saRNA LNP with Vaccmixb, V46-PNI 516, V47-PNI 516, and V22-PNI 516 following addition of Jurkat cells to GFP saRA LNPs.
- Figure 6 is a graphical representation of in vitro transfection ability of mRNA LNP with V47-PNI 516, V46-PNI 516, V02-PNI 516 and V22-PNI 516 following addition of Jurkat cells to GFP mRNA LNP.
- Figure 7 is a graphical representation of transfection ability of EGFP saRNA LNP with expansion medium supplemented with activators/recombinant human IL-2.
- Figure 8 is photographs of mice that have had LNP with a luciferase mRNA payload injected into them intravenously at 0.1 mg/kg.
- the top two photographs show fluorescence at four hours post administration of LNP comprising PNI 516 30%, DPSC 56%, cholesterol 12.5%, and DMP-PEG 1.5%.
- the bottom two photographs which are brighter than the top two paragraphs, show fluorescence at four house post administration of LNP comprising PNI 580 30%, DSPC 56%, cholesterol 12.5%, and DMG-PEG 1.5%.
- lipid mix formulations for use in generating more effective lipid-based formulations of nucleic acid cargo (including vaccines) and other oligomers such as peptides, and methods for using these lipid mixes and resulting formulations to prepare vaccines.
- the lipid mixes have an unusual ratio of ionizable lipid to phospholipid as compared to established optimal ratios of 0.2, yet surprisingly measure as being more effective.
- the lipid mix formulations of the invention are provided for mixing with nucleic acid vaccine elements to create a lipid nucleic acid particle which enhances delivery of the nucleic acid into target cells or tissues, with less toxicity and greater ease of manufacture than lipid nucleic acid particles such as those made from commercially available lipid mixes such as LipofectamineTM transfecting agent.
- the invention provides lipid mix formulations including ionizable lipid, one or more phospholipid(s), cholesterol, and optionally a stabilizing agent. [0037] In another aspect, the lipid mix formulations according the invention are provided for formulating vaccines. [0038] In another aspect, the invention provides lipid mix formulations for formulating mRNA LNPs.
- Self-amplifying mRNA has the advantage of prolonged translation and high yield of target antigen compared to regular mRNA vaccines like Modema mRNA- 1273 (Spikevax) and Pfizer-Biontech’s BNT162b2 (Comirnaty) (see Table 1).
- a nucleic acid vaccine element is self-amplifying mRNA as described in PCT Pub. No. WO23057979 by Abraham et al.
- SARS-CoV- 2 severe acute respiratory syndrome coronavirus 2
- spike protein has proven a useful target for SARS-CoV-2 vaccines, and is of interest for variants of the virus that continue to cause illness.
- a modified spike protein gene sequence was used herein.
- the word “comprising” is used in a non-limiting sense to mean that items following the word are included, but items not specifically mentioned are not excluded. It will be understood that in embodiments which comprise or may comprise a specified feature or variable or parameter, alternative embodiments may consist, or consist essentially of such features, or variables or parameters. A reference to an element by the indefinite article “a” does not exclude the possibility that more than one of the elements is present, unless the context clearly requires that there be one and only one of the elements.
- the term “about” is defined as meaning 12.5% plus or minus the recited number. It is used to signify that the desired target concentration might be, for example, 40 Mol%, but that through mixing inconsistencies, the actual percentage might differ by +/- 5 Mol%.
- the term “substantially” is defined as being 5% plus or minus the recited number. It is used to signify that the desired target concentration might be, for example, 40 Mol%, but that through mixing inconsistencies, the actual percentage might differ by +/- 2 Mol%.
- nucleic acid cargo is defined as a substance intended to have a direct effect in the mitigation or prevention of disease, or to act as a research reagent.
- the nucleic acid cargo is an mRNA, or saRNA
- the therapeutic agent is a nucleic acid therapeutic, such as an RNA polynucleotide.
- the therapeutic agent is messenger RNA (mRNA) or self-amplifying RNA (saRNA).
- mRNA messenger RNA
- saRNA self-amplifying RNA
- the therapeutic agent is double stranded circular DNA (plasmid), linearized plasmid DNA, minicircles or msDNA (multicopy single stranded DNA).
- the word “comprising” is used in a non-limiting sense to mean that items following the word are included, but items not specifically mentioned are not excluded. It will be understood that in embodiments which comprise or may comprise a specified feature or variable or parameter, alternative embodiments may consist, or consist essentially of such features, or variables or parameters. A reference to an element by the indefinite article “a” does not exclude the possibility that more than one of the elements is present, unless the context clearly requires that there be one and only one of the elements. [0048] In this disclosure, “transfection” means the transfer of nucleic acid into cells for the purpose of inducing the expression of a specific gene(s) of interest in both laboratory and clinical settings.
- LIPOFECTINTM and LIPOFECTAMINETM are established commercial transfecting reagents sold by ThermoFisher Scientific. These research reagents contain permanently cationic lipid/s and are not suitable for use in or ex vivo.
- nCoV PNI A5 saRNA is a SARS Cov2 spike protein expressing saRNA incorporated into a Venezuelan Equine Encephalitis Virus TC83 Replicon with subgenomic promoter containing a multiple cloning site to insert any GOIs as described in PCT Pub. No. WO23057979 by Abraham et al.
- Lipid refers to a structurally diverse group of organic compounds that are fatty acid derivatives or sterols or could be lipid like materials as in lipidoids (example C 12-200) and are characterized by being insoluble in water but soluble in many organic solvents.
- Lipid mix formulations refers to the types of components, ratios of components, and the ratio of the total components to the nucleic acid payloads. For example, a lipid mix formulation of 30 Mol% ionizable lipid, 50 Mol% phospholipid, 20 Mol % sterol, and 1.5 Mol % stabilizing agent would be a lipid mix formulation. In preferred embodiments, the lipid mix formulation is 28.7 mol% IL/49.8 mol% DSPC/20 mol% Cholesterol/1.5 mol% PEG-DMG.
- Lipid Particles or “Lipid Nanoparticles” or “LNP”.
- the invention provides lipid particles manufactured from the lipid mix formulations described above and illustrated below.
- the lipid particle represents the physical organization of the lipid mix formulation with the therapeutic agent and among the components.
- a lipid nanoparticle is a lipid particle under 200 microns in diameter.
- Lipid particles are generally spherical assemblies of lipids, nucleic acid, cholesterol, and stabilizing agents. Positive and negative charges, ratios, as well as hydrophilicity and hydrophobicity dictate the physical structure of the lipid particles in terms of size and orientation of components.
- lipid particles may lead to an aqueous interior with one or more bilayers as in liposomes or it may have a solid interior as in a solid nucleic acid lipid nanoparticle.
- lipid monolayers or bilayers in single or multiple forms.
- Lipid particles are between 1 and 1000 microns in diameter.
- “Viability” when referring to cells in vitro means the ability to continue to grow, divide, and continue to grow and divide, as is normal for the cell type or tissue culture strain. Cell viability is affected by harsh conditions or treatments. Cell viability is critical in ex vivo therapy or parenteral administration.
- compositions of the invention comprise ionizable lipids as a component.
- ionizable lipid refers to a lipid that is cationic or becomes ionizable (protonated) as the pH is lowered below the pKa of the ionizable group of the lipid but is more neutral at higher pH values. At pH values below the pKa, the lipid is then able to associate with negatively charged nucleic acids (e.g., oligonucleotides).
- the term “ionizable lipid” includes lipids that assume a positive charge on pH decrease from physiological pH, and any of a number of lipid species that carry a net positive charge at a selective pH. Examples of suitable ionizable lipids are found in PCT Pub. Nos. WO20252589 and W021000041.
- the ionizable lipid is present in lipid formulations according to other embodiments of the invention, preferably in a ratio of about 10 to about 40 Mol%, (“Mol%” means the percentage of the total moles that is of a particular component).
- Mol% means the percentage of the total moles that is of a particular component).
- the term “about” in this paragraph signifies a plus or minus range of 5 Mol% at increments of 0.1.
- DODMA or l,2-dioleyloxy-3 -dimethylaminopropane
- MC3 O-(Z,Z,Z,Z-heptatriaconta-6,9,26,29-tetraen-19- yl)-4-(N,N-dimethylamino) (“MC3”).
- LNP may be generated from the lipid formulations including the ionizable lipids of the invention.
- Phospholipids as used herein, also known as “helper lipids” or “neutral lipids” are incorporated into lipid formulations and lipid particles of the invention in embodiments.
- the lipid formulations and lipid particles of the invention include one or more phospholipids at about 25 to 60 Mol% of the composition. Suitable phospholipids support the formation of particles during manufacture.
- Phospholipids refer to any one of several lipid species that exist in either in an anionic, uncharged or neutral zwitterionic form at physiological pH.
- Representative phospholipids include diacylphosphatidylcholines, diacylphosphatidylethanolamines, diacylphosphatidylglycerols, and although not strictly “phospholipids” in a technical sense, is intended to include sphingomyelins, dihydrosphingomyelins, cephalins, and cerebrosides.
- Exemplary phospholipids include zwitterionic lipids, for example, distearoylphosphatidylcholine (DSPC), dioleoylphosphatidylcholine (DOPC), dipalmitoylphosphatidylcholine (DPPC), dioleoyl-phosphatidylethanolamine (DOPE), palmitoyloleoylphosphatidylcholine (POPC), palmitoyloleoyl-phosphatidylethanolamine (POPE) and dioleoyl-phosphatidylethanolamine 4-(N-maleimidomethyl)-cyclohexane-l- carboxylate (DOPE-mal), dipalmitoyl phosphatidyl ethanolamine (DPPE), dimyristoylphosphoethanolamine (DMPE), distearoyl-phosphatidylethanolamine (DSPE), 16-0-monom ethyl PE, 16-O-dimethyl PE, 18-1 -trans PE,
- the phospholipid is distearoylphosphatidylcholine (DSPC). In preferred embodiments, the phospholipid is DOPE. In preferred embodiments, the phospholipid is DSPC. [0058] In another embodiment, the phospholipid is any lipid that is negatively charged at physiological pH.
- lipids include phosphatidylglycerols such as dioleoylphosphatidylglycerol (DOPG), dipalmitoylphosphatidylglycerol (DPPG), palmitoyloleyolphosphatidylglycerol (POPG), cardiolipin, phosphatidylinositol, diacylphosphatidylserine, diacylphosphatidic acid, and other anionic modifying groups joined to neutral lipids.
- DOPG dioleoylphosphatidylglycerol
- DPPG dipalmitoylphosphatidylglycerol
- POPG palmitoyloleyolphosphatidylglycerol
- cardiolipin phosphatidylinositol
- diacylphosphatidylserine diacylphosphatidic acid
- anionic modifying groups joined to neutral lipids.
- suitable phospholipids include glycolipids (e.g.
- Stabilizer or stabilizing agent is a term used to identify the agent that is added to the ionizable lipid, the phospholipid, and the sterol that form the lipid formulation according to the invention.
- non-ionic stabilizing agents include: Polyethyleneglycol (PEG), Polysorbates (Tweens), TPGS (Vitamin E polyethylene glycol succinate), BrijTM S20 (polyoxyethylene (20) stearyl ether), BrijTM35 (Polyoxyethylene lauryl ether, Polyethyleneglycol lauryl ether), BrijTMS10 (Polyethylene glycol octadecyl ether, Polyoxyethylene (10) stearyl ether), and MyrjTM52 (polyoxyethylene (40) stearate).
- the stabilizing agent includes PEGylated lipids including PEG-DMG 2000 (“PEG-DMG”). Other polyethylene glycol conjugated lipids may also be used.
- the stabilizing agent may be used alone or in combinations with each other.
- the stabilizing agent comprises about 0.1 to 3 Mol% of the overall lipid mixture. In some embodiments, the stabilizing agent includes about 0.5 to 2.5 Mol% of the overall lipid mixture. In some embodiments, the stabilizing agent is present at greater than 2.5Mol%. In some embodiments the stabilizing agent is present at 5 Mol%. In some embodiments the stabilizing agent is present at 10 to 15 Mol%. In some embodiments, the stabilizing agent is present at 2.5 to 10 Mole%.
- the stabilizing agent is about 0.1,0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.2, 2.3, 2.4, 2.5, and so forth.
- the stabilizing agent is 2.6-10 Mol % of the lipid mixture. In other embodiments, the stabilizing agent is present at greater than 10 Mol% of the lipid mixture.
- Sterols are included in the preferred lipid mix formulations for certain applications, and lipid particles made therefrom include cholesterol, beta-sitosterol, and 20- alpha-hydroxysterol, and phytosterol.
- sterol is present at about 15 to 25 Mol% of the final lipid mix in some embodiments.
- a modified sterol or synthetically derived sterol is present.
- Nucleic Acids The lipid mix formulations and lipid particles of the present invention are useful for the systemic or local delivery of nucleic acids. In the case of vaccines, delivery is localized to the skin or muscle.
- nucleic acid is meant to include any oligonucleotide or polynucleotide whose delivery into a cell causes a desirable effect.
- the definition includes diagnostic agents and research reagents which follow the same physical principles afforded by the invention.
- Fragments containing up to 50 nucleotides are generally termed oligonucleotides, and longer RNA are called polyynucleotides.
- oligonucleotides of the present invention are 20-50 nucleotides in length.
- polynucleotides are 996 to 4500 nucleotides in length, as in the case of messenger RNA.
- polynucleotides of the invention include up to 14,000 nucleotides.
- nucleic acid also refers to ribonucleotides, deoxynucleotides, modified ribonucleotides, modified deoxyribonucleotides, modified phosphate-sugar- backbone oligonucleotides, other nucleotides, nucleotide analogs, and combinations thereof, and can be single stranded, double stranded, or contain portions of both double stranded and single stranded sequence, as appropriate.
- Messenger RNA mRNA
- mRNA can be modified or unmodified, base modified, and may include different type of capping structures, such as Capl.
- nucleic acid refers to self-amplifying RNA (“saRNA”).
- nucleic acid refers to a plasmid including self-amplifying RNA.
- polynucleotide and “oligonucleotide” are used interchangeably and mean single-stranded and double-stranded polymers of nucleotide monomers, including 2'-deoxyribonucleotides (DNA) and ribonucleotides (RNA) linked by internucleotide phosphodiester bond linkages, e.g., 3'-5' and 2'-5', inverted linkages, e.g., 3'- 3' and 5'-5', branched structures, or internucleotide analogs.
- DNA 2'-deoxyribonucleotides
- RNA ribonucleotides linked by internucleotide phosphodiester bond linkages, e.g., 3'-5' and 2'-5', inverted linkages, e.g., 3'- 3' and 5'-5', branched structures, or internucleotide analogs.
- Polynucleotides have associated counter ions, such as H+, NH4+, trialkylammonium, Mg2+, Na+, and the like.
- a polynucleotide may be composed entirely of deoxyribonucleotides, entirely of ribonucleotides, or chimeric mixtures thereof.
- Polynucleotides may include intemucleotide, nucleobase and/or sugar analogs.
- polypeptides herein encompasses “oligopeptides” and “proteins” and tertiary and quaternary structures thereof, that are therapeutic agents in some embodiments.
- An oligopeptide generally consists of from two to twenty amino acids.
- a polypeptide is a single linear chain of many amino acids of any length held together by amide bonds.
- a protein consists of one or more and may include structural proteins, energy catalysts, albumin, hemoglobin, immunoglobulins, and enzymes.
- nucleic acid cargoes include deoxyribonucleic acid, complementary deoxyribonucleic acid, complete genes, ribonucleic acid, oligonucleotides and ribozymes for gene therapies targeting a variety of diseases, such as cancer, infectious diseases, genetic disorders and neurodegenerative diseases.
- the nucleic acid therapeutic (NAT) is incorporated into lipid particle during its formation with compounds of the invention. More than one nucleic acid therapeutic may be incorporated in this way. They may be derived from natural sources, or more commonly, synthesized or grown in culture.
- nucleic acid cargo examples include but are not limited to antisense oligonucleotides, ribozymes, microRNA, mRNA, ribozyme, tRNA, tracrRNA, sgRNA, snRNA, siRNA, shRNA, ncRNA, miRNA, mRNA, pre-condensed DNA, plasmid or pDNA, or an aptamer.
- Nucleic acid reagents are used to silence genes (with for example siRNA), express genes (with for example mRNA), edit genomes (with for example CRISPR/Cas9), and reprogram cells for return to the originating organism (for example ex vivo cell therapy to reprogram immune cells for cancer therapy; autologous transfer or allogenic transfer).
- the nucleic acid that is present in a lipid particle according to this invention includes any form of nucleic acid that is known.
- the nucleic acids used herein can be single-stranded DNA or RNA, or double-stranded DNA or RNA, or DNA-RNA hybrids.
- double-stranded DNA include structural genes, genes including control and termination regions, and self-replicating systems such as viral or plasmid DNA.
- double-stranded RNA include siRNA and other RNA interference reagents.
- Singlestranded nucleic acids include antisense oligonucleotides, guide RNA, including CRISPR- Cas9 gRNA, ribozymes, microRNA, mRNA, and triplex-forming oligonucleotides. More than one nucleic acid may be incorporated into the lipid particle, for example mRNA and guide RNA together, or different types of each, or in combination with protein.
- a nucleic acid encodes a genetically engineered receptor that specifically binds to a ligand, such as a recombinant receptor, and a molecule involved in a metabolic pathway, or functional portion thereof.
- a ligand such as a recombinant receptor
- the molecule involved in a metabolic pathway is a recombinant molecule, including an exogenous entity.
- a genetically engineered receptor and the molecule involved in a metabolic pathway may be encoded by one nucleic acid or two or more different nucleic acids.
- a first nucleic acid might encode a genetically engineered receptor that specifically binds to a ligand and a second nucleic acid might encode the molecule involved in a metabolic pathway.
- “Therapeutic agents” as used herein include nucleic acid cargo as herein described.
- the lipid particles of the invention can be assessed for size using devices that size particles in solution, such as the MalvernTM ZetasizerTM.
- the particles generally have a mean particle diameter of from 15nm to lOOOnm.
- a subgroup of lipid particles is “lipid nanoparticles” or LNP with a mean diameter of from about 15 to about 300 nm.
- the mean particle diameter is greater than 300 nm.
- the lipid particle has a diameter of about 300 nm or less, 250 nm or less, 200 nm or less, 150 nm or less, 100 nm or less, or 50 nm or less.
- the lipid particle has a diameter of from about 50 to about 150 nm.
- Smaller particles generally exhibit increased circulatory lifetime in vivo compared to larger particles. Smaller particles have an increased ability to reach tumor sites than larger nanoparticles.
- the lipid particle has a diameter from about 15 to about 50 nm.
- the lipid particles according to embodiments of the invention can be prepared by standard T-tube mixing techniques, turbulent mixing, trituration mixing, agitation promoting orders self-assembly, or passive mixing of all the elements with self-assembly of elements into nanoparticles.
- LNP lipid nanoparticles
- lipid particles with nucleic acid therapeutic include mixing preformed lipid particles with nucleic acid therapeutic (NAT) in the presence of ethanol or mixing lipid dissolved in ethanol with an aqueous media containing NAT and result in lipid particles with NAT encapsulation efficiencies of 65-99%. All of these methods rely on the presence of ionizable lipid to achieve encapsulation of NAT and a stabilizing agent to inhibit aggregation and the formation of large structures.
- the properties of the lipid particle systems produced, including size and NAT encapsulation efficiency, are sensitive to a variety of lipid mix formulation parameters such as ionic strength, lipid and ethanol concentration, pH, NAT concentration and mixing rates.
- Microfluidic two-phase droplet techniques have been applied to produce monodisperse polymeric microparticles for drug delivery or to produce large vesicles for the encapsulation of cells, proteins, or other biomolecules.
- the use of hydrodynamic flow focusing to create monodisperse liposomes of controlled size has also been demonstrated.
- Parameters such as the relative lipid and NAT concentrations at the time of mixing, as well as the mixing rates are difficult to control using current formulation procedures, resulting in variability in the characteristics of NAT produced, both within and between preparations. This is what makes the new formulation so unique is that the ratio of ionizable lipid to phospholipid is surprisingly low.
- NanoAssemblr® instruments Precision NanoSystems ULC, Vancouver, Canada
- NanoAssemblr® instruments enable the rapid and controlled manufacture of nanomedicines (liposomes, lipid nanoparticles, and polymeric nanoparticles).
- NanoAssemblr® instruments accomplish controlled molecular self-assembly of nanoparticles via microfluidic mixing cartridges that allow millisecond mixing of nanoparticle components at the nanoliter, microlitre, or larger scale with customization or parallelization. Rapid mixing on a small scale allows reproducible control over particle synthesis and quality that is not possible in larger instruments.
- Preferred methods incorporate instruments such as the microfluidic mixing devices like the NanoAssemblr® SparkTM, IgniteTM, BenchtopTM and NanoAssemblr® BlazeTM in order to achieve nearly 100% of the nucleic acid used in the formation process is encapsulated in the particles in one step.
- the lipid particles are prepared by a process by which from about 75 to about 100% of the nucleic acid used in the formation process is encapsulated in the particles.
- U.S. Pat. Nos. 9,758,795 and 9,943,846 describe methods of using small volume mixing technology and novel formulations derived thereby.
- U.S. Pat. No. 10,159,652 describes more advanced methods of using small volume mixing technology and products to formulate different materials.
- U.S. Pat. No. 9,943,846 discloses microfluidic mixers with different paths and wells to elements to be mixed.
- PCT Pub. No. WO 2017117647 discloses microfluidic mixers with disposable sterile paths.
- U.S. Pat. No. 10,076,730 discloses bifurcating toroidal micromixing geometries and their application to microfluidic mixing.
- W02018006166 discloses a programmable automated micromixer and mixing chips therefore.
- U.S. Design Nos. D771834, D771833, D772427, D803416, D800335, D800336 and D812242 disclose mixing cartridges having microchannels and mixing geometries for mixer instruments sold by Precision NanoSystems ULC.
- devices for biological microfluidic mixing are used to prepare the lipid particles according to embodiments of the invention.
- the devices include a first and second stream of reagents, which feed into the microfluidic mixer, and lipid particles are collected from the outlet, or emerge into a sterile environment.
- the first stream includes a therapeutic agent in a first solvent.
- Suitable first solvents include solvents in which the therapeutic agents are soluble and that are miscible with the second solvent.
- Suitable first solvents include aqueous buffers.
- Representative first solvents include citrate and acetate buffers, or optionally other low pH buffers.
- the second stream includes lipid mix materials in a second solvent.
- Suitable second solvents include solvents in which the ionizable lipids according to embodiments of the invention are soluble, and that are miscible with the first solvent.
- Suitable second solvents include 1,4-di oxane, tetrahydrofuran, acetone, acetonitrile, dimethyl sulfoxide, dimethylformamide, acids, and alcohols.
- Representative second solvents include aqueous ethanol 90%, or anhydrous ethanol.
- a suitable device includes one or more microchannels (i.e., a channel having its greatest dimension less than 2 millimeters).
- the microchannel has a diameter from about 20 to about 300pm.
- the microchannel has a diameter from about 300 to about 1000pm
- at least one region of the microchannel has a principal flow direction and one or more surfaces having at least one groove or protrusion defined therein, the groove or protrusion having an orientation that forms an angle with the principal direction (e.g., a staggered herringbone mixer), as described in U.S. Pat. No. 9,943,846, or a bifurcating toroidal flow as described in U.S. Pat. No. 10,076,730.
- a staggered herringbone mixer e.g., a staggered herringbone mixer
- it is advantageous to avoid undue fluidic resistance prior to the mixing region.
- one example of a device has nonmicrofluidic channels having dimensions greater than 1000pm, to deliver the fluids to a single mixing channel
- the lipid mixes of the present invention may be used to deliver a therapeutic agent to a cell, in vitro or in vivo.
- the therapeutic agent is a nucleic acid, which is delivered to a cell using nucleic acid-lipid particles of the present invention.
- the nucleic acid can be an siRNA, miRNA, an LNA, a plasmid, replicon (including a vector with antigenic mRNA), a self-amplifying RNA, an mRNA, a guide RNA, a transposon, or a single gene.
- the therapeutic agent is an oligopeptide, polypeptide, or protein which is delivered to a cell using peptide-lipid particles of the present invention.
- the therapeutic agent is a mixture of nucleic acid and protein components, such as Cas9.
- the methods and lipid mix formulations may be readily adapted for the delivery of any suitable therapeutic agent for the treatment of any disease or disorder that would benefit from such treatment.
- the present invention provides methods for introducing a nucleic acid into a cell (i.e., transfection).
- Transfection is a technique commonly used in molecular biology for the introduction of nucleic acid cargo (or NATs) from the extracellular to the intracellular space for the purpose of transcription, translation and expression of the delivered nucleic acid therapeutic (NAT) for production of some gene product or for down regulating the expression of a disease-related gene.
- nucleic acid cargo or NATs
- NAT delivered nucleic acid therapeutic
- Transfection efficiency is commonly defined as either the i) percentage of cells in the total treated population showing positive expression of the delivered gene, as measured by live or fixed cell imaging (for detection of fluorescent protein), and flow cytometry or ii) the intensity or amount of protein expressed by treated cell(s) as analyzed by live or fixed cell imaging or flow cytometry or iii) using protein quantification techniques such as ELISA, or western blot.
- These methods may be carried out by contacting the lipid particles or lipid mix formulations of the present invention with the cells for a period of time sufficient for intracellular delivery to occur.
- Typical applications include using well known procedures to provide intracellular delivery of siRNA to knock down or silence specific cellular targets in vitro and in vivo.
- applications include delivery of DNA or mRNA sequences that code for therapeutically useful polypeptides.
- therapy is provided for genetic diseases by supplying deficient or absent gene products.
- Methods of the present invention may be practiced in vitro, ex vivo, or in vivo.
- the lipid mix formulations of the present invention can also be used for delivery of nucleic acids to cells in vivo, using methods which are known to those of skill in the art.
- the lipid mix formulations of the invention can be used for delivery of nucleic acids to a sample of patient cells that are ex vivo, then are returned to the patient.
- nucleic acid cargo by a lipid particle of the invention is described below.
- the pharmaceutical compositions are preferably administered parenterally (e.g., intraarticularly, intravenously, intraperitoneally, subcutaneously, intrathecally, intradermally, intratracheally, intraosseous, intramuscularly or intratumorally).
- parenterally e.g., intraarticularly, intravenously, intraperitoneally, subcutaneously, intrathecally, intradermally, intratracheally, intraosseous, intramuscularly or intratumorally.
- the pharmaceutical compositions are administered intravenously, intramuscularly, intrathecally, or intraperitoneally by a bolus injection.
- Other routes of administration include topical (skin, eyes, mucus membranes), oral, pulmonary, intranasal, sublingual, rectal, and vaginal.
- the pharmaceutical compositions are preferably administered to biological samples that have been removed from the organism, then the cells are washed and restored to the organism.
- the organism may be a mammal, and in particular may be human. This process is used for cell reprogramming, genetic restoration, or. immunotherapy, for example.
- the present invention provides a method of modulating the expression of a target polynucleotide or polypeptide. These methods generally comprise contacting a cell with a lipid particle of the present invention that is associated with a nucleic acid capable of modulating the expression of a target polynucleotide or polypeptide.
- modulating refers to altering the expression of a target polynucleotide or polypeptide. Modulating can mean increasing or enhancing, or it can mean decreasing or reducing.
- the present invention provides a method of treating a disease or disorder characterized by overexpression of a polypeptide in a subject, comprising providing to the subject a pharmaceutical composition of the present invention, wherein the therapeutic agent is selected from an siRNA, a microRNA, an antisense oligonucleotide, and a plasmid capable of expressing an siRNA, a microRNA, or an antisense oligonucleotide, and wherein the siRNA, microRNA, or antisense RNA includes a polynucleotide that specifically binds to a polynucleotide that encodes the polypeptide, or a complement thereof.
- the therapeutic agent is selected from an siRNA, a microRNA, an antisense oligonucleotide, and a plasmid capable of expressing an siRNA, a microRNA, or an antisense oligonucleotide
- the siRNA, microRNA, or antisense RNA includes a polynucleotide that specifically
- the present invention provides a method of treating a disease or disorder characterized by under-expression of a polypeptide in a subject, comprising providing to the subject a pharmaceutical composition of the present invention, wherein the therapeutic agent is selected from an mRNA, a self-amplifying RNA (saRNA), or a plasmid, includes a nucleic acid therapeutic that specifically encodes or expresses the under-expressed polypeptide, or a complement thereof. Examples include RNA vaccines, and more particularly self-amplifying mRNA vaccines.
- Methods of delivery of biological active agents for treatment of disease include, in one embodiment, the compounds, compositions, methods and uses of the invention are for delivering a biologically active agent to liver cells (e.g., hepatocytes). In one embodiment, the compounds, compositions, methods and uses of the invention are for delivering a biologically active agent to a tumor or to tumor cells (e.g., a primary tumor or metastatic cancer cells). In another embodiment, the compounds, compositions, methods and uses are for delivering a biologically active agent to the skin adipose, muscle and lymph nodes (subcutaneous dosing).
- liver cells e.g., hepatocytes
- the compounds, compositions, methods and uses of the invention are for delivering a biologically active agent to a tumor or to tumor cells (e.g., a primary tumor or metastatic cancer cells).
- the compounds, compositions, methods and uses are for delivering a biologically active agent to the skin adipose, muscle and lymph nodes (subcutaneous dos
- a formulation of the invention is contacted with the liver or liver cells of the via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct injection, portal vein injection, catheterization, stenting), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., direct injection, portal vein injection, catheterization, stenting
- a formulation of the invention is contacted with the kidney or kidney cells of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct injection, catheterization, stenting), to facilitate delivery.
- a formulation of the invention is contacted with the tumor or tumor cells of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct injection, catheterization, stenting), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., direct injection, catheterization, stenting
- a formulation of the invention is contacted with the CNS or CNS cells (e.g., brain cells and/or spinal cord cells) of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct injection, catheterization, stenting, osmotic pump administration (e.g., intrathecal or ventricular)), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., direct injection, catheterization, stenting, osmotic pump administration (e.g., intrathecal or ventricular)
- a formulation of the invention is contacted with the PNS or PNS cells of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct injection), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., direct injection
- a formulation of the invention is contacted with the lung or lung cells of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., pulmonary administration directly to lung tissues and cells), to facilitate delivery.
- a formulation of the invention is contacted with the vasculature or vascular cells of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., clamping, catheterization, stenting), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., clamping, catheterization, stenting
- a formulation of the invention is contacted with the skin or skin cells (e.g., dermis cells and/or follicular cells) of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct dermal application, iontophoresis), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., direct dermal application, iontophoresis
- a formulation of the invention is contacted with the eye or ocular cells (e.g., macula, fovea, cornea, retina) of the patient via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct injection, intraocular injection, periocular injection, subretinal, iontophoresis, use of eyedrops, implants), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., direct injection, intraocular injection, periocular injection, subretinal, iontophoresis, use of eyedrops, implants
- formulation of the invention is contacted with the ear or cells of the ear (e.g., cells of the inner ear, middle ear and/or outer ear) of the patient as is generally known in the art, such as via parenteral administration (e.g., intravenous, intramuscular, subcutaneous administration) or local administration (e.g., direct injection), to facilitate delivery.
- parenteral administration e.g., intravenous, intramuscular, subcutaneous administration
- local administration e.g., direct injection
- formulation of the invention is delivered intramuscularly, after which immune cells can infiltrate the delivery site and process delivered RNA and/or process encoded antigen produced by non-immune cells, such as muscle cells.
- Such immune cells can include macrophages (e.g, bone marrow derived macrophages), dendritic cells (e.g, bone marrow derived plasmacytoid dendritic cells and/or bone marrow derived myeloid dendritic cells), T-cells, and monocytes (e.g., human peripheral blood monocytes), etc. (for example, see W02012/006372 .
- macrophages e.g, bone marrow derived macrophages
- dendritic cells e.g, bone marrow derived plasmacytoid dendritic cells and/or bone marrow derived myeloid dendritic cells
- T-cells e.g., T-cells
- monocytes e.g., human peripheral blood monocytes
- a formulation of the invention will generally be prepared as an injectable, a pulmonary or nasal aerosol, or in a delivery device (e.g., syringe, nebulizer, sprayer, inhaler, dermal patch, etc.).
- a delivery device e.g., syringe, nebulizer, sprayer, inhaler, dermal patch, etc.
- This delivery device can be used to administer a pharmaceutical formulation to a subject, e.g., to a human, for immunization.
- the invention encompasses delivering an RNA that encodes an immunogen.
- This immunogen elicits an immune response which recognizes the immunogen, to provide immunity against a pathogen, or against an allergen, or against a tumor antigen. Immunizing against disease and/or infection caused by a pathogen is preferred.
- the RNA is delivered with a lipid formulation of the invention (e.g., formulated as a liposome or LNP).
- the invention utilizes LNPs within which immunogen-encoding RNA is encapsulated. Encapsulation within LNPs can protect RNA from RNase digestion. The encapsulation efficiency does not have to be 100%. Presence of external RNA molecules (e.g., on the exterior surface of a liposome or LNP) or “naked” RNA molecules (RNA molecules not associated with a liposome or LNP) is acceptable.
- RNA molecules for a formulation comprising lipids and RNA molecules, at least half of the RNA molecules (e.g., at least 50%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least about 96%, at least about 97%, at least about 98%, or at least 99% of the RNA molecules) are encapsulated in LNPs or complexed with LNPs.
- the RNA molecules e.g., at least 50%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least about 96%, at least about 97%, at least about 98%, or at least 99% of the RNA molecules
- lipid nanoparticles may comprise a lipid core (e.g., the formulation may comprise a mixture of LNPs and nanoparticles with a lipid core).
- the RNA molecules may be encapsulated by LNPs that have an aqueous core or cores, and complexed with the LNPs that have a lipid core by noncovalent interactions (e.g., ionic interactions between negatively charged RNA and cationic lipid). Encapsulation and complexation with LNPs (whether with a lipid or aqueous core) can protect RNA from RNase digestion. The encapsulation/complexation efficiency does not have to be 100%.
- RNA molecules not associated with the LNP RNA molecules not associated with the LNP
- at least half of the population of RNA molecules e.g., at least e.g., at least 50 %, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, or at least 95% of the RNA molecules
- LNP diameters are in the range of 60-180 nm, and in more particular embodiments, in the range of 80-160 nm.
- An LNP can be part of a composition comprising a population of LNPS, and the LNPS within the population can have a range of diameters.
- compositions comprising a population of LNPs with different diameters
- the average diameter (by intensity, e.g., Z-average) of the population is ideally in the range of 60-180 nm, e.g., in the range of 80-160 nm; and/or the diameters within the plurality have a poly dispersity index ⁇ 0.2.
- mixing can be performed using a process in which two feed streams of aqueous RNA solution are combined in a single mixing zone with one stream of an ethanolic lipid solution, all at the same flow rate e.g., in a microfluidic channel. See other description relating to NanoAssemblr® microfluidic mixers sold by Precision NanoSystems ULC, Vancouver, Canada.
- RNA Molecules After in vivo administration of an immunization composition (“vaccine vector LNP”), the delivered RNA is released and is translated inside a cell to provide the immunogen in situ.
- the RNA is plus (“+”) stranded, so it can be translated by cells without needing any intervening replication steps such as reverse transcription.
- the RNA is a self-replicating RNA.
- a self-replicating RNA molecule (replicon) can, when delivered to a vertebrate cell even without any proteins, lead to the production of multiple daughter RNAs by transcription from itself (via an antisense copy which it generates from itself).
- a self-replicating RNA molecule is thus in certain embodiments: a (+) strand molecule that can be directly translated after delivery to a cell, and this translation provides an RNA-dependent RNA polymerase which then produces both antisense and sense transcripts from the delivered RNA.
- the delivered RNA leads to the production of multiple daughter RNAs.
- These daughter RNAs, as well as collinear subgenomic transcripts, may be translated themselves to provide in situ expression of an encoded immunogen, or may be transcribed to provide further transcripts with the same sense as the delivered RNA which are translated to provide in situ expression of the immunogen.
- RNA replicon RNA replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon replicon.
- These (+) stranded replicons are translated after delivery to a cell to yield a replicase (or replicase-transcriptase).
- the replicase is translated as a polyprotein which auto cleaves to provide a replication complex which creates genomic ( — ) strand copies of the (+) strand delivered RNA.
- Suitable alphavirus replicons can use a replicase from a Sindbis virus, a Semliki Forest virus, an eastern equine encephalitis virus, or more preferably, a Venezuelan equine encephalitis virus, etc.
- the system may be a hybrid or chimeric replicase in some embodiments.
- a preferred embodiment is a replicon according to one embodiment of the invention, showing a PNI-V101 replicon capable of self-amplifying in mammalian cells and expressing, through mRNA assembled, immunogenic proteins such as Sars-COV-2 spike proteins.
- An RNA molecule may have a 5' cap (e.g., a 7-methylguanosine). This cap can enhance in vivo translation of the RNA.
- the 5' nucleotide of an RNA molecule useful with the invention may have a 5' triphosphate group. In a capped RNA, this may be linked to a 7- methylguanosine via a 5'-to-5' bridge. A 5' triphosphate can enhance RIG-I binding and thus promote adjuvant effects.
- An RNA molecule may have a 3' poly A tail. It may also include a poly A polymerase recognition sequence (e.g., AAUAAA) near its 3' end.
- An RNA molecule useful with the invention for immunization purposes will typically be singlestranded. Single-stranded RNAs can generally initiate an adjuvant effect by binding to TLR7, TLR8, RNA helicases and/or PKR.
- RNA molecules can conveniently be prepared by in vitro transcription (IVT).
- IVT can use a (cDNA) template created and propagated in plasmid form in bacteria, or created synthetically (for example by gene synthesis and/or polymerase chain-reaction (PCR) engineering methods).
- the self-replicating RNA can include (in addition to any 5' cap structure) one or more nucleotides having a modified nucleobase.
- a self-replicating RNA can include one or more modified pyrimidine nucleobases, such as pseudouridine and/or 5 methylcytosine residues.
- the RNA includes no modified nucleobases, and may include no modified nucleotides, i.e., all of the nucleotides in the RNA are standard A, C, G and U ribonucleotides (except for any 5' cap structure, which may include a 7' methylguanosine).
- the RNA may include a 5' cap comprising a 7' methylguanosine, and the first I, 2 or 3 5' ribonucleotides may be methylated at the 2' position of the ribose.
- RNA used with the invention for immunization purposes ideally includes only phosphodiester linkages between nucleosides, but in some embodiments, it contains phosphoramidate, phosphorothioate, and/or methylphosphonate linkages.
- the invention includes embodiments in which multiple species of RNAs are formulated with a lipid formulation provided by the invention, such as two, three, four or more species of RNA, including different classes of RNA (such as mRNA, siRNA, self-replicating RNAs, and combinations thereof).
- Immunogen RNA molecules used with the invention for immunization purposes encode a polypeptide immunogen.
- the RNA after administration, the RNA is translated in vivo and the immunogen can elicit an immune response in the recipient.
- the immunogen may elicit an immune response against a pathogen (e.g., a bacterium, a virus, a fungus or a parasite) but, in some embodiments, it elicits an immune response against an allergen or a tumor antigen.
- the immune response may comprise an antibody response (usually including IgG) and/or a cell mediated immune response.
- the polypeptide immunogen will typically elicit an immune response which recognizes the corresponding pathogen (or allergen or tumor) polypeptide, but in some embodiments the polypeptide may act as a mimotope to elicit an immune response which recognizes a saccharide.
- the immunogen will typically be a surface polypeptide, e.g., an adhesin, a hemagglutinin, an envelope glycoprotein, a spike glycoprotein, etc.
- the RNA molecule can encode a single polypeptide immunogen or multiple polypeptides. Multiple immunogens can be presented as a single polypeptide immunogen (fusion polypeptide) or as separate polypeptides.
- immunogens are expressed as separate polypeptides from a replicon, then one or more of these may be provided with an upstream IRES or an additional viral promoter element.
- multiple immunogens may be expressed from a polyprotein that encodes individual immunogens fused to a short autocatalytic protease (e.g., foot-and-mouth disease virus 2A protein), or as inteins.
- polypeptide immunogens e.g., I, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more immunogens
- RNA molecule such as a self-replicating RNA, encoding one or more immunogens (either the same or different as the polypeptide immunogens).
- the immunogen elicits an immune response against Coronavirus spp., whose immunogens include, but are not limited to, those derived from a SARS CoV-1, SARS-CoV-2(12); human influenza virus, and Neisseria meningitidis for which useful immunogens include, but are not limited to, membrane proteins such as adhesins, autotransporters, toxins, iron acquisition proteins, and factor H binding protein.
- a combination of three useful polypeptides is disclosed in Giuliani et al. (Proc Natl Acad Sci U S A. 2006; 103(29): 10834-9. Epub 2006/07/06. doi: 10.1073/pnas.0603940103.
- Hepatitis viruses whose immunogens can include hepatitis B virus surface antigen (HBsAg), hepatitis C virus, delta hepatitis virus, hepatitis E virus, or hepatitis G virus antigens;
- Rhabdovirus immunogens include, but are not limited to, those derived from a Rhabdovirus, such as a Lyssavirus (e.g., a Rabies virus) and Vesiculovirus (VSV); Caliciviridae, whose immunogens include, but are not limited to, those derived from Calciviridae, such as Norwalk virus (Norovirus), and Norwalk-like Viruses, such as Hawaii Virus and Snow Mountain Virus; avian infectious bronchitis (IBV), Mouse hepatitis virus (MHV), and Porcine transmissible gastroenteritis virus (TGEV); Retrovirus, whose immunogens include those derived from an Oncovirus, a Lentivirus
- the immunogen elicits an immune response to Chikungunya virus; in other embodiments, the immunogen elicits an immune response to Zika virus.
- the immunogen elicits an immune response against a virus which infects fish.
- Fungal immunogens may be derived from Dermatophytres and other opportunistic organisms.
- the immunogen elicits an immune response against a parasite from the Plasmodium genus, such as P. falciparum, P. vivax, P. malariae or P. ovale.
- the invention may be used for immunizing against malaria.
- the immunogen elicits an immune response against a parasite from the Caligidae family, particularly those from the Lepeophtheirus and Caligus genera e.g., sea lice such as Lepeophtheirus salmonis or Caligus rogercresseyi.
- the immunogen is an mRNA specific to neoantigens in cancer cells or solid tumours.
- the immunogen is a tumor antigen selected from: (a) cancer-testis antigens such as NY-ESO-I, SSX2, SCPI as well as RAGE, BAGE, GAGE and MAGE family polypeptides, for example, GAGE-1, GAGE-2, MAGE-1, MAGE-2, MAGE- 3, MAGE-4, MAGE-5, MAGE-6, and MAGE-12 (which can be used, for example, to address melanoma, lung, head and neck, NSCLC, breast, gastrointestinal, and bladder tumors; (b) mutated antigens, for example, p53 (associated with various solid tumors, e.g., colorectal, lung, head and neck cancer), p21/Ras (associated with, e.g., melanoma, pancreatic cancer and colorectal cancer), CDK4 (associated with, e.g., melanoma), MUMI (associated with, e.g., melanoma),
- tumor immunogens include, but are not limited to, pl 5, Hom/Mel-40, H-Ras, E2A-PRL, H4-RET, IGH-IGK, MYL-RAR, Epstein Barr virus antigens, EBNA, human papillomavirus (HPV) antigens, including E6 and E7, hepatitis B and C virus antigens, human T-cell lymphotropic virus antigens, TSP-180, pl85erbB2, pl80erbB-3, c-met, mn-23HI, TAG-72-4, CA 19-9, CA 72-4, CAM 17.1, NuMa, K-ras, pl6, TAGE, PSCA, CT7, 43-9F, 5T4, 791 Tgp72, beta-HCG, BCA225, BTAA, CA 125, CA 15-3 (CA 27.29&BCAA), CA 195, CA 242, CA-50, CAM43, CD68&KPI, CO-029, F
- compositions for Vaccines may include one or more small molecule immunopotentiators.
- Pharmaceutical compositions of the invention may include one or more preservatives, such as thiomersal or 2 phenoxyethanol.
- Mercury -free and preservative-free vaccines can be prepared.
- compositions comprise an effective amount of the lipid formulations described herein (e.g., LNP), as well as any other components, as needed.
- Immunologically effective amount refers to the amount administered to an individual, either in a single dose or as part of a series, is effective for treatment (e.g., prophylactic immune response against a pathogen). This amount varies depending upon the health and physical condition of the individual to be treated, age, the taxonomic group of individual to be treated (e.g., nonhuman primate, primate, etc.), the capacity of the individual's immune system to synthesize antibodies, the degree of protection desired, the formulation of the vaccine, the treating doctor’s assessment of the medical situation, and other relevant factors.
- the LNP-formulated RNA and pharmaceutical compositions described herein are for in vivo use for inducing an immune response against an immunogen of interest.
- the invention provides a method for inducing an immune response in a vertebrate comprising administering an effective amount of the LNP formulated RNA, or pharmaceutical composition, as described herein.
- the immune response is preferably protective and preferably involves antibodies and/or cell-mediated immunity.
- the compositions may be used for both priming and boosting purposes.
- a prime-boost immunization schedule can be a mix of RNA and the corresponding polypeptide immunogen (e.g., RNA prime, protein boost).
- the invention also provides an LNP or pharmaceutical composition thereof for use in inducing an immune response in a vertebrate.
- the invention also provides the use of a LNP or pharmaceutical composition thereof in the manufacture of a medicament for inducing an immune response in a vertebrate.
- the vertebrate can be protected against various diseases and/or infections e.g., against bacterial and/or viral diseases as discussed above.
- Vaccines according to the invention may either be prophylactic (i.e., to prevent infection) or therapeutic (i.e. to treat infection), but will typically be prophylactic.
- the vertebrate is preferably a mammal, such as a human or a large veterinary mammal (e.g., horses, cattle, deer, sheep, llamas, goats, pigs).
- compositions of the invention will generally be administered directly to a patient.
- Direct delivery may be accomplished by parenteral injection (e.g., subcutaneously, intraperitoneally, intravenously, intramuscularly, intradermally, or to the interstitial space of a tissue.
- Alternative delivery routes include rectal, oral (e.g., tablet, drops, spray), buccal, sublingual, vaginal, topical, transdermal or transcutaneous, intranasal, ocular, aural, pulmonary or other mucosal administration.
- Intradermal and intramuscular administration are two preferred routes. Injection may be via a needle (e.g., a hypodermic needle), but needle-free injection may alternatively be used.
- a typical intramuscular dose is 0.5 ml.
- the invention may be used to induce systemic and/or mucosal immunity, preferably to elicit an enhanced systemic and/or mucosal immunity. Dosage can be by a single dose schedule or a multiple dose schedule. Multiple doses may be used in a primary immunization schedule and/or in a booster immunization schedule.
- a multiple dose schedule the various doses may be given by the same or different routes, for example, a parenteral prime and mucosal boost, a mucosal prime and parenteral boost, etc.
- Multiple doses will typically be administered at least one week apart (e.g., about two weeks, about three weeks, about four weeks, about six weeks, about eight weeks, about ten weeks, about 12 weeks, about 16 weeks, etc.).
- multiple doses may be administered approximately six weeks, ten weeks and 14 weeks after birth, e.g., at an age of six weeks, ten weeks and 14 weeks, as often used in the World Health Organization's Expanded Program on Immunization (“EPI”).
- EPI World Health Organization's Expanded Program on Immunization
- two primary doses are administered about two months apart, e.g., about seven, eight or nine weeks apart, followed by one or more booster doses about six months to one year after the second primary dose, e.g., about six, eight, ten or 12 months after the second primary dose.
- three primary doses are administered about two months apart, e.g., about seven, eight or nine weeks apart, followed by one or more booster doses about six months to one year after the third primary dose.
- the pharmaceutical compositions described herein may be prepared by any method known or hereafter developed in the art of pharmacology.
- such preparatory methods include the step of associating the active ingredient with an excipient and/or one or more other accessory ingredients.
- a pharmaceutical composition in accordance with the present disclosure may be prepared, packaged, and/or sold in bulk, as a single unit dose, and/or as a plurality of single unit doses.
- a “unit dose” refers to a discrete amount of the pharmaceutical composition comprising a predetermined amount of the active ingredient.
- the amount of the active ingredient may generally be equal to the dosage of the active ingredient which would be administered to a subject and/or a convenient fraction of such a dosage including, but not limited to, one-half or one-third of such a dosage.
- Relative amounts of the active ingredient, the pharmaceutically acceptable excipient, and/or any additional ingredients in a pharmaceutical composition in accordance with the present disclosure may vary, depending upon the identity, size, and/or condition of the subject being treated and further depending upon the route by which the composition is to be administered.
- the composition may comprise between 0.1 percent and 99 percent (w/w) of the active ingredient.
- compositions may additionally comprise a pharmaceutically acceptable excipient, which, as used herein, includes, but is not limited to, any and all solvents, dispersion media, diluents, or other liquid vehicles, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, and the like, as suited to the particular dosage form desired.
- a pharmaceutically acceptable excipient includes, but is not limited to, any and all solvents, dispersion media, diluents, or other liquid vehicles, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, and the like, as suited to the particular dosage form desired.
- excipients for formulating pharmaceutical compositions and techniques for preparing the composition are known in the art (see Remington: The Science and Practice of Pharmacy, 21st Edition, A. R. Gennaro, Lippincott, Williams and Wilkins, Baltimore, MD, 2006).
- any conventional excipient medium may be incompatible with a substance or its derivatives, such as by producing any undesirable biological effect or otherwise interacting in a deleterious manner with any other component s) of the pharmaceutical composition.
- the particle size of the lipid particles may be increased and/or decreased.
- the change in particle size may be able to help counter biological reaction such as, but not limited to, inflammation or may increase the biological effect of the NAT delivered to mammals by changing biodistribution. Size may also be used to determine target tissue, with larger particles being cleared quickly and smaller one reaching different organ systems.
- compositions including the LNP include, but are not limited to, inert diluents, surface active agents and/or emulsifiers, preservatives, buffering agents, lubricating agents, and/or oils. Such excipients may optionally be included in the pharmaceutical formulations of the invention.
- LNP nucleic acid
- EPO erythropoietin
- GFP green fluorescent protein
- MFI Median Fluorescence Intensity
- min minute(s)
- Gene of interest signifies a genetic element or elements intended for expression to achieve a therapeutic goal, including immunization.
- A5 SARS Cov-2 antigenic coding elements and epidermal growth factor (EPO) are examples of a GOI to illustrate the present invention, but GOI is not limited to this demonstrated example.
- IL ionizable lipid, a lipid that is cationic at higher pH, and converts to uncharged at lower pH. IL are commonly used in formulations of nucleic acid cargo.
- Stabilizing Agent any stabilizing agent including polyethyleneglycol derivatives, including PEG-DMG 2000 and other suitable polymers, which have the purpose of extending circulation life, among other things.
- Components of the Lipid Mixes include the ionizable lipid, phospholipid, cholesterol, and stabilizing agent.
- Low pH buffers (3-6) may be used.
- the pH of the buffer is typically below the pKa of the lipid.
- PNI 516 is ionizable lipid (Z)-3-(2-((l,17-bis(2-octylcyclopropyl)heptadecan-9- yl)oxy)-2-oxoethyl)-2-(pent-2-en-l-yl)cyclopentyl 4-(dimethylamino)butanoate found in PCT Publication WO20252589 Al by Jain, N, Thomas A, and Brown A.
- PNI 560 is ionizable lipid (Z)-3-(2-((l,17-bis(2-octylcyclopropyl)heptadecan-9- yl)oxy)-2-oxoethyl)-2-(pent-2-en-l-yl)cyclopentyl l,4-dimethylpiperidine-4-carboxylate found in PCT Publication WO20252589 by Jain et al.
- PNI 127 is an ionizable lipid found in PCT Publication W021000041 Al by Thomas, A; Jain, N; and Brown A. Its structural formula is (2R,3S,4S)-2-(((l,4- dimethylpiperidine-4-carbonyl)oxy)methyl)tetrahydrofuran-3,4-diyl (9Z,9'Z, 12Z, 12'Z)- bis(octadeca-9, 12-dienoate).
- PNI 550 3-(2-((l,17-bis(2-octylcyclopropyl)heptadecan-9-yl)oxy)-2- oxoethyl)cyclopentyl 4-(dimethylamino)butanoate
- PNI 580 (2R,3 S,4S)-2-(((4-(dimethylamino)butanoyl)oxy)methyl)tetrahydrofuran-3,4-diyl bis(2-hexyldecanoate);
- PNI 659 ((2R,3R,4S)-3,4-bis((2-hexyldecyl)oxy)tetrahydrofuran-2- yl)methyl 4-(dimethylamino)butanoate;
- PNI 721 (2R,3S,4S)-2-((((2- (dimethylamino)ethyl)carbamoyl)oxy)methyl)tetrahydrofur
- the linearized vector was purified using Phenol/Chloroform/Isoamyl alcohol (25:24: 1) and sodium acetate precipitation. Briefly, equal volumes of Phenol/Chloroform/Isoamyl alcohol solution were added to the linearized vector, vortexed for 20 seconds and incubated at room temperature for 2 minutes. The mixture was spun, after which the top aqueous phase containing the linearized vector was carefully pipetted into a clean RNase/Dnase free tube and precipitated 3 volumes of 100% ethanol were added, mixed well and removed carefully and the DNA pellet air dried and resuspended in nuclease free water. The concentration and purity of the linearized vector was checked using NanoDropTM spectrophotometer (VWR).
- VWR NanoDropTM spectrophotometer
- Lipid mix formulation of lipid particles were generated by rapidly mixing lipidethanol solution with an aqueous buffer inside a microfluidic mixer designed to induce chaotic advection and provide a controlled mixing environment at intermediate Reynolds number (24 ⁇ Re ⁇ 1000).
- the microfluidic channels have herringbone features or are configured in a manner as shown in PCT Pub. No. WO2017117647 or U.S. Patent No. 10,835,878.
- Particle sizes and “poly dispersity index” (PDI) of the lipid particle were measured by dynamic light scattering (DLS).
- PDI indicates the width of the particle distribution. This is a parameter calculated from a cumulative analysis of the (DLS)-measured intensity autocorrelation function assuming a single particle size mode and a single exponential fit to the autocorrelation function. From a biophysical point of view, a PDI below 0.1 indicates that the sample is monodisperse.
- the particles produced by mechanical micromixers such as the NanoAssemblr® SparkTM and NanoAssemblr® IgniteTM (Precision NanoSystems ULC) are substantially homogeneous in size assuming all other variables are neutral.
- a lower PDI indicates a more homogenous population of lipid particles.
- the SparkTM instrument is used in a screening setting to identify the lead compositions. Once the composition is selected, the lipid particle can be fine-tuned using the NanoAssemblr® IgniteTM instrument. Once the process parameters Flow Rate Ratio and Total Flow Rate are identified for a specific nanoparticle formulation, the nanoparticle technology can be scaled up using the same process parameter values.
- RNA or nucleic acid therapeutic as described above, was diluted using sodium acetate buffer to the required concentration.
- Lipid nucleic acid particle (LNP) samples were then prepared as described by running both fluids using the NanoAssemblr® Ignite instrument. Briefly, 63 pg of nucleic acids in sodium acetate buffer in a total volume of 0.75mL was mixed with 0.25mL of 12.5 mM lipid mix solution as required by the N/P ratio of 8, then LNP were diluted by in line dilution at 2: 1 ratio in PBS.
- LNP lipid nucleic acid particles
- Lipid particles were also manufactured by a larger microfluidic mixer instrument, the NanoAssemblr® IgniteTM for testing. Briefly, 350pL of mRNA was diluted using 100 mM sodium acetate buffer to the required concentration of 0.2 to 0.3 mg/mL. A lipid mix solution of 12.5 or 25 mM was typically used. LNP were then prepared by running both fluids, namely, nucleic acids in aqueous solvent and Lipid Mix in ethanol at a flow ratio of 3 : 1 and at a total flow rate of 12ml/min in the microfluidic mixer.
- the post cartridge lipid nucleic acid particle sample was diluted into RNAse free tubes containing three to 40 volumes of PBS, pH 7.4. Ethanol was finally removed through either dialysis in PBS, pH 7, or using AmiconTM centrifugal filters (Millipore, USA) at 3000 RPM, or using TFF systems. Once the required concentration was achieved, the lipid nucleic acid particles were filter sterilized using 0.2pm filters in aseptic conditions. Final encapsulation efficiency was measured by the Ribogreen® assay. Quant- iTTM RiboGreen® RNA Reagent and Kit (Invitrogen) following manufacturer directions. Self-amplifying mRNA plasmid NAT preparation is described below. Observed particle attributes were generally sized from 50 - 200nm for mRNA, depending on lipid composition.
- BHK 570 cells were purchased from ATCC, cultured as usual, and were transfected in a 96-well plate with saRNA A5 loaded LNP at 1000 to 0.49 ng/mL.
- LNP comprised of V46-PNI 516 showed a 12.6 fold improvement in ECso as compared to Vaccmixb-PNI 516.
- the V46 lipid mix showed an unexpected twelve times improvement in ECso.
- SARsCOV-2 protein expression was measured following BHK 570 cell transfection with various PNI 516 LNP formulations containing the nCoV PNI A5 saRNA as disclosed in PCT Pub. WO23057979 by Abraham et al.
- a visual demonstration of SARsCOV-2 protein expression following transfection in BHK 570 cells can be made wherein green fluorescence represents the SARsCOV-2 protein stained with a fluorescent labelled anti SARsCOV-2 spike protein antibody (FAB105403G) following BHK 570 cells transfection at 31.25 ng /RNA well with Vaccmixb PNI 516 or V46-PNI 516.
- BHK 570 cells were plated in a 96-well plate (20k cells/well) for 48 hours before transfection. Following transfection, the cells were incubated for a further 24 hours before being fixed with 4% PFA for 20 minutes.
- Cells were then permeabilized in 0.1% Triton X-100 and stained with a 1 :50 dilution of FAB105403G antibody. Cells were imaged on a Cytation 7TM cell imaging multimode reader (BioTek, Agilent, Santa Clara, CA).
- SARsCOV-2 protein expression dose response following Vaccmixb PNI 516 and V46-PNI 516 transfection in BHK 570 cells is graphically illustrated in Fig. 1.
- a dose response study was performed by testing a decreasing amount of RNA from 1000 to 0.49 ng/ mL.
- BHK 570 cells were plated in a 96-well plate (20k cells/well) for 48 hours before transfection. Following transfection, the cells were incubated for a further 24 hours before being fixed with 4% PFA for 20 minutes. Cells were then permeabilized in 0.1% Triton X- 100 and stained with a 1 :50 dilution of FAB105403G antibody. Cells were imaged on the Cytation 7TM (BioTek, Agilent, Santa Clara, CA) multimode reader.
- SARsCOV-2 protein expression was measured following BHK 570 cell transfection with various PNI516 LNP formulations containing the nCoV PNI A5 saRNA.
- a dose response study was performed by testing a decreasing amount of RNA from 1000 to 0.49 ng/ mL.
- BHK 570 cells were plated in a 96-well plate (20k cells/well) for 48 hours before transfection. Following transfection, the cells were incubated for a further 24 hours before being fixed with 4% PFA for 20 minutes. Cells were then permeabilized in 0.1% Triton X-100 and stained with a 1 :50 dilution of FAB105403G antibody. Cells were imaged on the Cytation 7TM. Results of the study are illustrated in Fig. 2.
- SARsCOV-2 spike protein specific IgG expression in mouse serum was measured following intramuscular LNP injection to BALB/c mice at lug/mouse.
- Enzyme- linked immunosorbent assay (ELISA) was performed according to the established methods for measuring SARS-CoV-2 spike protein-specific IgG antibodies in serum samples collected from animals on day 21 and 42 post immunization.
- Reagents for the ELISA DPBS IX Sterile (pH7.4) without Ca2+and Mg2+, Corning; assay diluent B (5X ); Purified anti-SARS-CoV-2 S Protein SI Antibody Rat; ELISA wash buffer (20X); HRP Goat anti-ratlgG (minimal x-reactivity)Antibody; and TMB substrate solution, (all from BioLegend, San Diego, CA); Isopropyl Alcohol (IP A), 70% and Water (Nuclease Free) (from VWR); Nunc MaxiSorpTM flat-bottom 96-well plate and Stop solution (Thermo Fisher); and SARS-CoV-2 (2019-nCoV) spike S1+S2 ECD-His recombinant protein, (Sino Biologicals).
- Fig. 3 illustrates the IgG levels for the different groups on day 21. On day 42, results were beneficially about ten-fold higher (not shown), which is a good result.
- Cryo-Transmission Electron Microscopy (CryoTEM) Structure of LNP [0184] LNPs comprising PNI 516, DSPC, cholesterol and PEG-DMG encapsulating saRNA were cryopreserved, sectioned, and prepared for Cryo-TEM examination. CryoTEM of LNP comprising the standard IL:DSPC ratio of 3.8 resulted in mostly dense unilamellar vesicles with some multi-compartmental vesicles, while LNP comprising IL:DSPC with DMG-PEG ratio of 0.58 showed multilayers vesicles with higher numbers of multi-compartments vesicles.
- samples were sealed and stored at 4 deg. C. The next day, samples were reconstituted with 500 pL of molecular biology grade water. The rehydrated LNP were then analyzed for particle size, SARNA encapsulation and biological activity as described above.
- the formulation ECso was determined using a dose response in vitro by testing a decreasing amount of RNA from 1000 to 0.49 ng/mL.
- BHK 570 cells were plated in a 96- well plate (20k cells/well) for 48 hours before transfection. Following transfection, the cells were incubated for a further 24 hours before being fixed with 4% PFA for 20 minutes. Cells were then permeabilized in 0.1% Triton X-100 (Sigma Aldrich) and stained with a 1 :50 dilution of FAB105403G antibody (Bio-Techne, Toronto, Ontario). Cells were imaged on the Cytation 7TM (Agilent, Santa Clara, CA) reader.
- V46-PNI 516 LNP and V47-PNI 516 did not show significant changes in particle size after rehydration, in contrast to Vaccmixb PNI516 which significantly grew in size.
- the Vaccmixb PNI516 showed a 7-fold decrease in activity as compared to V46-PNI 516 LNP and V47-PNI 516 in BHK 570 cell transfection.
- Ionizable lipid combinations in the high phospholipid compositions according to the invention were made as described above.
- the ECso was determined as described above in BHK 570 cells using an in vitro dose response by testing a decreasing amount of RNA from 1 to 0.00049 pg/ well.
- Table 13 illustrates the composition and ratios of various mixtures of ionizable lipids, and the effect of LNP made therefrom on GFP saRNA EC50 and the difference between EC 50 results from Vaccmixb (control) EC50.
- V76 and V68 representing combinations of ionizable lipids, showed exceptionally good EC50 pg/ml) scores.
- V75, V69, V46, V74, V76 all representing ionizable lipid mixtures were also very good compared to controls.
- This Example demonstrates the in vitro transfection ability in Jurkat cells of saRNA LNPs made with different lipid mixes. Following transfection at 0.32ug/mL of V02 Vaccmixb, V46-PNI516, V47-PNI516 and V22-PNI516 in Jurkat cells, %GFP positivity was evaluated using flow cytometry. The LNPs were tested by adding Jurkat cells (50k/well) to GFP saRNA LNP to a final saRNA concentration of 3.2ug/mL. Following a 24 hour incubation, cells were resuspended in a BSA stain buffer and analyzed using BECKMAN COULTERTM Cytoflex S flow cytometer. Results are shown in Figure 5.
- This Example demonstrates the in vitro transfection ability in Jurkat cells of mRNA LNPs made with different lipid mixes. Following transfection of V46-PNI516, V02- PNI516 and V22-PNI516 in Jurkat cells, %GFP positivity was evaluated in a dose response experiment. The dose response was tested by adding Jurkat cells (50k/well) to a decreasing amount of GFP mRNA LNP from 3 to 0.001465 ug/well. Following a 24 hour incubation, cells were re-suspended in a BSA stain buffer and analyzed using Beckman Coulter Cytoflex S flow cytometer. Results are shown in Figure 6.
- This Example demonstrates the transfection ability in T cells isolated from PBMC of EGFP saRNA LNPs made with different lipid mixes.
- Human PBMCs were activated for 3 days in ImmunoCult-XF T cell expansion medium supplemented with activators/recombinant human IL-2. After the activation, cells were diluted to a concentration of 0.25x106 cells/ml along with ApoE.
- LNP formulations (mentioned in Figure 7) containing EGFP saRNA were supplemented to the cell culture media and the transfection was carried out for 24 hrs.
- CD4+ and CD8+ T cells were gated using specific antibodies and %GFP positivity in the T cells were evaluated using standard flow cytometry analysis. Dead cells were disregarded from the analysis using viability stain. Dead cells are susceptible to giving nonspecific staining with the fluorescent antibodies and are generally excluded by gating them out. Results are shown in Figure 7.
- LNPs Two different LNPs according to embodiments of the invention were injected into mice intravenously at 0.1 mg/kg.
- the payload was Luciferase.
- mRNA Trilink- CLEANCAPTM FLuc mRNA (5moU), Cat# L-7202).
- the top row of photographs in Figure 8 showing fluorescence at four hours post administration was achieved by intravenous administration of LNP comprising PNI 516 30%, DPSC 56%, cholesterol 12.5% and DMG- PEG 1.5%.
- PNI 580 appears slightly more effective at enabling non-native protein expression than PNI 516 in this model.
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