WO2023165108A1 - Modified gpr75 and uses thereof - Google Patents

Modified gpr75 and uses thereof Download PDF

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WO2023165108A1
WO2023165108A1 PCT/CN2022/117816 CN2022117816W WO2023165108A1 WO 2023165108 A1 WO2023165108 A1 WO 2023165108A1 CN 2022117816 W CN2022117816 W CN 2022117816W WO 2023165108 A1 WO2023165108 A1 WO 2023165108A1
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amino acid
gpr75
acid sequence
modified
seq
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PCT/CN2022/117816
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French (fr)
Chinese (zh)
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衡杰
郭涵博
杨怡然
何鋆彤
李京
卓微
倪晓丹
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水木未来(北京)科技有限公司
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/72Receptors; Cell surface antigens; Cell surface determinants for hormones
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K19/00Hybrid peptides, i.e. peptides covalently bound to nucleic acids, or non-covalently bound protein-protein complexes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/62DNA sequences coding for fusion proteins

Definitions

  • the disclosure belongs to the field of biotechnology, and more specifically, the disclosure relates to a modified GPR75 and its use.
  • G protein-coupled receptors are the largest class of cell membrane receptors in the human body. The completion of the Human Genome Project provides a basis for analyzing the distribution, sequence and function of the family members 1 . There are more than 800 G protein-coupled receptor members in the human body, including about 370 non-olfactory G protein-coupled receptors and more than 400 olfactory receptors. These G protein-coupled receptors are divided into six subfamilies, rhodopsin family, adhesion family, secretin receptor family, glutamate receptor family family), Frizzled family, and Tasted family.
  • G protein-coupled receptors are involved in mediating a series of important biological functions of organisms, from chemosensory recognition (vision, smell, taste) to the regulation of endocrine molecules, etc. 2 .
  • the importance of function stems from the fact that the receptors of this family can recognize a variety of ligands, common ligands include monoamines (dopamine, norepinephrine, serotonin, histamine), amino acid transmitters (glutamate , ⁇ -aminobutyric acid), polypeptides (tchykinins, neurotensin, somatostatin, trypsin secretin, glucagon-like peptide-1, endocrine releasing factor), lipid derivatives ( Lysophosphatidic acid, sphingosine phosphate, eicosanoid) and odor etc.
  • GPR75 G protein-coupled receptor 75, G protein-coupled receptor 75
  • G protein-coupled receptor 75 is a member of the G protein-coupled receptor family, and its endogenous agonist ligands include metabolite 20-HETE 5 and chemokine CCL5/RANTES 6 .
  • GPR75 has an expression distribution in a large number of cell types, among which GPR75 expressed in pancreatic islets regulates insulin release through the activation of CCL5, and participates in the regulation of glucose homeostasis in the human body6 .
  • big data studies published in scientific journals have shown that the GPR75 gene is involved in the regulation of obesity in mice and is a clinically important target for obesity treatment 7 .
  • the human GPR75 gene contains 540 amino acids and has the typical 7 transmembrane characteristics of members of the G protein-coupled receptor family 8 .
  • the C-terminus of the receptor has a random coil sequence of about 140 amino acids in length. Due to their longer random coils and lack of an aspartate/arginine/tyrosine (DRY) motif, they are classified as atypical chemokine receptors (ACRs) 9 .
  • CCL5 activates the GPR75 receptor on the cell membrane, resulting in the up-regulation of intracellular phospholipase C-mediated IP3 (inositol triphosphate, inositol triphosphate) and Ca 2+ concentrations 10 .
  • cryo-electron microscopy11 which marked a new era in the field of structural biology12.
  • cryo-electron microscopy was applied to the structural analysis of the receptor-G protein complex. Over the ensuing 4-year period, approximately 45 independent high-resolution structures of receptor-G protein complexes were successively resolved13 .
  • GPR75 receptors are clinically valuable molecules that require inhibitors, and currently lack the receptor structure in its inactive state, the present disclosure provides a modified GPR75.
  • a first aspect of the present disclosure provides a modified GPR75 comprising:
  • a first domain comprising an amino acid sequence derived from a ⁇ 2 adrenoceptor
  • the second structural domain is the random sequence between the fifth transmembrane helix and the sixth transmembrane helix and the random sequence at the N-terminal and C-terminal in the wild-type GPR75, and is derived from BRIL
  • the amino acid sequence of the fusion protein connects the domain between the fifth transmembrane helix and the sixth transmembrane helix.
  • the first domain comprises the amino acid sequence shown in SEQ ID NO: 4 or an amino acid sequence having at least 80% homology to the amino acid sequence shown in SEQ ID NO: 4.
  • the second domain comprises the amino acid sequence shown in SEQ ID NO: 3 or an amino acid sequence having at least 80% homology to the amino acid sequence shown in SEQ ID NO: 3.
  • the engineered GPR75 comprises one or more of the following sequences:
  • the amino acid sequence shown in SEQ ID NO:5 binds to the function of a specific ligand, and the stringent conditions are medium stringent conditions, medium-high stringent conditions, high stringent conditions or very high stringent conditions.
  • the engineered GPR75 further comprises a tag, a protease cleavage site, a signal peptide, a peptide linker, or any combination thereof.
  • the engineered GPR75 comprises a tag at its N-terminus and/or C-terminus.
  • the engineered GPR75 comprises a signal peptide at its N-terminus.
  • the protease cleavage site is located between two adjacent elements; the elements are selected from the group consisting of a first domain, a second domain, a tag, a signal peptide and a peptide linker.
  • the modified GPR75 comprises one or more of the following sequences:
  • the amino acid sequence shown in SEQ ID No: 13 binds to the function of a specific ligand, and the stringent conditions are medium stringent conditions, medium-high stringent conditions, high stringent conditions or very high stringent conditions.
  • the second aspect of the present disclosure provides a polynucleotide encoding the modified GPR75 described in the first aspect of the present disclosure.
  • the third aspect of the present disclosure provides an expression vector comprising the polynucleotide described in the second aspect of the present disclosure.
  • the fourth aspect of the present disclosure provides a host cell comprising the expression vector described in the third aspect of the present disclosure.
  • the fifth aspect of the present disclosure provides the modified GPR75 as described in the first aspect of the present disclosure, the polynucleotide as described in the second aspect of the present disclosure, the expression vector as described in the third aspect of the present disclosure, or the expression vector as described in the third aspect of the present disclosure.
  • the protein sequence that was originally not suitable for the study of the inactive state structure was truncated, the fusion protein was transformed, and a ⁇ 2 adrenoceptor with 24 amino acids was fused at the N-terminus
  • the sequence method can improve the stability and expression of the receptor.
  • this disclosure designs the sequence of the protein with multiple enzyme cutting sites (3C/TEV) and the fusion sequence of Sortase A, which can facilitate the reverse purification, matrix immobilization, and positioning of the purified protein in different schemes later as needed. Spot-specific fluorescent labels, etc., the modified sequences will be conveniently applied to nucleic acid-encoded small molecule drug libraries, drug binding experiments, etc. Moreover, the modified GPR75 provided by the present disclosure has better stability and higher expression than wild-type GPR75.
  • Figure 1A and Figure 1B are the prediction models of GPR75 protein structure.
  • Figure 1A shows the AlphaFold2 and RoseTTAFold prediction models for full-length GPR75
  • Figure 1B shows the predicted transmembrane region of GPR75. It can be seen from Figure 1A that GPR75 has a long random coil structure, which is not suitable for direct structural biology research.
  • Figure 2 shows the idea of GPR75 protein transformation.
  • Fig. 3 is the idea of optimizing the fusion site of GPR75 protein.
  • Figure 4 is a graph showing the difference in effect of GPR75 protein fusion site optimization.
  • Figure 5 shows the difference in expression between wild-type GPR75 and modified GPR75 detected by western blot.
  • the figure shows the Western blot results of GPR75 wild type and modified type.
  • Lane 1 is GPR75 wild type, and lane 2 is GPR75 modified type. From the Western blot results, the expression level of modified GPR75 is significantly increased.
  • the modified GPR75 has a higher protein expression level.
  • the expression level of wild-type GPR75 is extremely low, and can hardly be detected under the same expression conditions.
  • Fig. 6 is a gel filtration chromatography UV-280 absorption peak comparison between modified GPR75 fused with BRIL and truncated GPR75 (no BRIL fusion and no N-terminal random sequence deletion of wild-type GPR75) in an embodiment of the present disclosure.
  • the solid UV-280 absorption peak in the figure is the modified GPR75 fused with BRIL, and the dotted UV-280 absorption peak is the truncated GPR75.
  • Figure 7A and Figure 7B are the SDS-PAGE gel image ( Figure 7A) and the photograph of frozen data ( Figure 7B) of the modified GPR75 in the embodiment of the present disclosure.
  • the purified modified GPR75 has higher purity, and the data particle dispersion of frozen sample preparation is good.
  • FIG. 8A and 8B are background activity analysis of modified GPR75 in test cases of the present disclosure.
  • the modified GPR75 without ligand binding can accelerate the GTP hydrolysis activity of Gq protein, while the ligand 20-HETE showed the effect of inhibiting the activity of 75 protein (Fig. 8A).
  • the IC50 of 20-HETE was measured to be about 2nM (Fig. 8B).
  • Figures 9A to 9C show the complex preparation and frozen data analysis of the engineered GPR75 and the anti-BRIL fab fragment in the test example of the present disclosure.
  • the engineered GPR75 and the anti-BRIL fab fragment co-migrate on molecular sieves (Fig. 9A), and SDS-PAGE further demonstrates that they can form a stable complex (Fig. 9B).
  • Two-dimensional sorting of single particles by cryo-EM revealed features of the receptor and complexes with the anti-BRIL fab fragment (Fig. 9C).
  • numerical range represented by "numerical value A - numerical value B" means the range which includes numerical value A and B of an end point.
  • the use of “substantially” or “substantially” means that the standard deviation from the theoretical model or theoretical data is within 5%, preferably 3%, more preferably within 1%.
  • references to “some specific/preferred embodiments”, “other specific/preferred embodiments”, “embodiments” and the like refer to specific elements described in relation to the embodiments (for example, A feature, structure, property, and/or characteristic) is included in at least one embodiment described herein, and may or may not be present in other embodiments.
  • references to “some specific/preferred embodiments”, “other specific/preferred embodiments”, “embodiments” and the like refer to specific elements described in relation to the embodiments (for example, A feature, structure, property, and/or characteristic) is included in at least one embodiment described herein, and may or may not be present in other embodiments.
  • the described elements may be combined in any suitable manner in the various embodiments.
  • polypeptide As used interchangeably herein to refer to a polymeric form of amino acids of any length, which may include encoded and non-encoded amino acids, chemically or biochemically modified or derived amino acids, and polypeptides with similar peptide backbones.
  • nucleic acid molecule polynucleotide
  • polynucleic acid polynucleic acid
  • nucleic acid a polymeric form of nucleotides of any length, whether deoxyribonucleotides or Ribonucleotides, or analogs thereof.
  • a polynucleotide can have any three-dimensional structure and can perform any known or unknown function.
  • Non-limiting examples of polynucleotides include genes, gene fragments, exons, introns, messenger RNA (mRNA), transfer RNA, ribosomal RNA, ribozymes, cDNA, recombinant polynucleotides, branched polynucleotides, plasmids , vectors, isolated DNA of any sequence, control regions, isolated RNA of any sequence, nucleic acid probes and primers.
  • Nucleic acid molecules can be linear or circular.
  • G protein-coupled receptor or "GPCR” or “GPR” refers to a transmembrane receptor capable of transmitting a signal from the outside of the cell to the inside of the cell through the G protein pathway and/or the arrestin pathway.
  • GPCR G protein-coupled receptor
  • GPR GPR
  • G protein-coupled receptors are polypeptides sharing a common structural motif with seven regions of between 22 and 24 hydrophobic amino acids that form seven alpha helices, each spanning the cell membrane. Each span is identified by a number, ie, transmembrane-1 (TM1), transmembrane-2 (TM2), etc., which in the invention may also be referred to as first transmembrane helix, second transmembrane helix, etc.
  • transmembrane is also linked by amino acid regions between transmembrane-2 and transmembrane-3, transmembrane-4 and transmembrane-5, and transmembrane-6 and transmembrane-7 on the outer or "extracellular" side of the cell membrane helix, the regions are referred to as "extracellular" regions 1, 2 and 3 (EC1, EC2 and EC3), respectively.
  • the transmembrane is also linked by amino acid regions between transmembrane-1 and transmembrane-2, transmembrane-3 and transmembrane-4, and transmembrane-5 and transmembrane-6 on the inner or "intracellular" side of the cell membrane helix, the regions are referred to as “intracellular” regions 1, 2 and 3 (IC1, IC2 and IC3), respectively.
  • the "carboxy" (“C”) terminus of the receptor is located in the intracellular space within the cell, and the "amino" (“N”) terminus of the receptor is located in the extracellular space outside the cell. Any of the above regions can be readily identified by analysis of the primary amino acid sequence of the GPCR.
  • ligand or "receptor ligand” means a molecule that specifically binds to a GPCR either intracellularly or extracellularly.
  • ligands may be proteins, (poly)peptides, lipids, small molecules, protein scaffolds, antibodies, antibody fragments, nucleic acids, carbohydrates.
  • Ligands can be synthetic or naturally occurring.
  • the term “ligand” includes “natural ligands", which are endogenous, natural ligands of native GPCRs. In most cases, a ligand is a "modulator” that increases or decreases the intracellular response upon contact with (eg, binds to) a GPCR expressed by the cell.
  • ligands that act as modulators include agonists, partial agonists, inverse agonists, and antagonists.
  • agonist refers to a ligand that increases the signaling activity of a receptor by binding to the receptor. Full agonists stimulate the receptor maximally; partial agonists do not elicit full activity even at saturating concentrations. Partial agonists can also function as “blockers” by preventing the binding of more potent agonists.
  • Antagonist refers to a ligand that binds to a receptor without stimulating any activity.
  • An “antagonist” is also called a “blocker” because of its ability to prevent the binding of other ligands and thus block agonist-induced activity.
  • inverse agonist refers to an antagonist that, in addition to blocking the effects of the agonist, reduces the basal or constitutive activity of the receptor below that of the receptor without ligand bound.
  • the term "host cell” refers to a cell into which an expression vector has been introduced.
  • Host cells can include bacterial, microbial, plant or animal cells.
  • Bacteria that are readily transformed include members of the enterobacteriaceae such as strains of Escherichia coli or Salmonella; the Bacillaceae such as Bacillus subtilis; Pneumococcus; Streptococcus and Haemophilus influenzae.
  • Suitable microorganisms include Saccharomyces cerevisiae and Pichia pastoris.
  • Suitable animal host cell lines include CHO (Chinese Hamster Ovary cell line) and NSO cells.
  • amino acid “addition” refers to the addition of amino acids at the C-terminus or N-terminus of an amino acid sequence.
  • an amino acid “deletion” means that 1, 2 or more than 3 amino acids can be deleted from the amino acid sequence.
  • amino acid “insertion” refers to inserting amino acid residues at appropriate positions in the amino acid sequence, and the inserted amino acid residues may be all or partly adjacent to each other, or the inserted amino acids may not be adjacent to each other.
  • amino acid substitution refers to the replacement of a certain amino acid residue at a certain position in the amino acid sequence by other amino acid residues; wherein, the “substitution” may be a conservative amino acid substitution.
  • “conservative modification”, “conservative substitution” or “conservative substitution” refers to other amino acid replacement proteins with similar characteristics (such as charge, side chain size, hydrophobicity/hydrophilicity, backbone conformation and rigidity, etc.) Amino acids in , so that frequent changes can be made without altering the biological activity of the protein.
  • Those skilled in the art are aware that, in general, single amino acid substitutions in non-essential regions of a polypeptide do not substantially alter biological activity (see, e.g., Watson et al. (1987) Molecular Biology of the Gene, The Benjamin/Cummings Pub. Co., p. 224, (4th edition)).
  • substitution of structurally or functionally similar amino acids is unlikely to destroy biological activity. Exemplary conservative substitutions are set forth below under "Exemplary Amino Acid Conservative Substitutions”.
  • “moderate to very high stringency conditions” include “moderate stringency conditions”, “medium-high stringency conditions”, “high stringency conditions” or “very high stringency conditions”, which describe the conditions for nucleic acid hybridization and washing.
  • Guidance on performing hybridization reactions is found in Current Protocols in Molecular Biology, John Wiley & Sons, N.Y. (1989), 6.3.1-6.3.6, which is incorporated herein by reference. Aqueous and non-aqueous methods are described in this document and either can be used.
  • specific hybridization conditions are as follows: (1) low stringency hybridization conditions in 6 ⁇ sodium chloride/sodium citrate (SSC), at about 45° C., then at least 50° C., in 0.2 ⁇ SSC, 0.1% SDS Medium wash 2 times (for low stringency conditions, the washing temperature can be increased to 55°C); (2) medium stringency hybridization conditions at 6 ⁇ SSC, at about 45°C, then at 60°C, at 0.2 ⁇ SSC, Wash 1 time or multiple times in 0.1% SDS; (3) high stringency hybridization conditions are at 6 ⁇ SSC, at about 45° C., then at 65° C., wash 1 time or more times in 0.2 ⁇ SSC, 0.1% SDS and Preferably; (4) very high stringency hybridization conditions are 0.5M sodium phosphate, 7% SDS, at 65°C, and then at 65°C, wash once or more in 0.2 ⁇ SSC, 1%SDS.
  • SSC sodium chloride/sodium citrate
  • exogenous refers to a substance produced outside an organism, a cell, or a human body as the case may be.
  • Endogenous refers to a substance produced in a cell, organism, or human body, as the case may be.
  • homology refers to sequence similarity between two polynucleotide sequences or between two polypeptides.
  • a position in both compared sequences is occupied by the same base or subunit of an amino acid monomer, for example if every position in two DNA molecules is occupied by an adenine, then the molecules are homologous at that position .
  • the percent homology between two sequences is a function of the number of matching or homologous positions shared by the two sequences divided by the number of compared positions x 100.
  • sequences are optimally aligned, if 6 of the 10 positions in the two sequences match or are homologous, then the two sequences are 60% homologous; if 95 of the 100 positions in the two sequences match or homology, then the two sequences are 95% homologous.
  • comparisons are made to give the greatest percent homology.
  • comparison can be performed by the BLAST algorithm, the parameters of which are chosen to give the largest match between the respective sequences over the entire length of the respective reference sequences.
  • the following references relate to the BLAST algorithm that is often used in sequence analysis: BLAST ALGORITHMS: Altschul, S.F.
  • the term "codon optimized” means that the nucleotide sequence encoding a polypeptide has been configured to contain codons preferred by the host cell or organism in order to improve gene expression and increase translation efficiency in the host cell or organism.
  • the term "tag” refers to a short peptide that is fused or linked to a protein of interest (such as the modified GPR75 of the present disclosure) and thereby facilitates soluble expression, detection and/or purification of the recombinant protein.
  • Tags can be fused or linked to the N- and/or C-terminus of the protein of interest (optionally via a linker or protease cleavage site).
  • Such tags are well known to those skilled in the art and have been described in detail in the prior art literature.
  • such tags include, but are not limited to, histidine tags (Sockolosky, J.T. and F.C. Szoka (2013).
  • Protein Expr Purif 87(2):129-135) glutathione transferase (GST) tags (Hayashi , K.and C.Kojima(2008).Protein Expr Purif 62(1):120-127), maltose binding protein (MBP) tag (Bataille, L., W.Dieryck, A.Hoc permitet, C.Cabanne, K .Bathany, S.Lecommandoux, B.Garbay and E.Garanger, Protein Expression and Purification Volume 110, June 2015, Pages 165-171), Thioredoxin (Trx) tag (Tomala, M., A.Lavrentieva, P .Moretti, U.Rinas, C.Kasper, F.Stahl, A.Schambach, E.Warlich, U.Martin, T.Cantz and T.Scheper, 2010, Protein Expr Purif 73(1):51-57), NusA tag (Li, K., T.J
  • Protein Expr Purif 12 (2): 159-165 DsbC tag (Kurokawa, Y., H.Yanagi and T.Yura(2001).J Biol Chem 276(17):14393-14399), SUMO tag (Marblestone, J.G., S.C.Edavettal, Y.Lim, P.Lim, X.Zuo and T.R.Butt(2006 ). Protein Sci15 (1): 182-189), msyB tag (Zou, Z., L. Cao, P. Zhou, Y. Su, Y. Sun and W. Li (2008).
  • the terms "signal peptide”, “signal sequence” or “signal peptide sequence” refer to short peptides that, when fused to a protein of interest (such as the engineered GPR75 of the present disclosure), are capable of promoting the expression of The target protein is secreted to the cell membrane or extracellularly.
  • the signal peptide is usually located at the N-terminal of the protein of interest, and various signal peptides are known to those skilled in the art, such as but not limited to hemagglutinin signal sequence, human insulin signal sequence, human interleukin 2 signal sequence, albumin signal sequence, etc. .
  • protease cleavage site refers to a site that can be specifically recognized and cleaved by a protease.
  • Various specific proteases and their recognition sites are well known to those skilled in the art and can be found in many prior art documents.
  • Those skilled in the art can use a suitable protease cleavage site in the fusion protein according to the actual situation, and use the corresponding protease to perform cleavage.
  • the use of a protease cleavage site may be advantageous, for example, to cleave a signal peptide and/or tag from a fusion protein, thereby obtaining a mature protein with the activity of interest.
  • the term "peptide linker” refers to a short peptide used to link two molecules such as proteins.
  • the fusion protein is obtained by introducing (for example, by PCR amplification or ligase) the polynucleotide sequence encoding the short peptide between two DNA fragments respectively encoding the two target proteins to be linked, and performing protein expression , such as target protein 1-peptide linker-target protein 2.
  • the term "vector” refers to a nucleic acid delivery vehicle into which a polynucleotide can be inserted.
  • the vector is called an expression vector.
  • a vector can be introduced into a host cell by transformation, transduction or transfection, so that the genetic material elements it carries can be expressed in the host cell.
  • Vectors are well known to those skilled in the art, including but not limited to: plasmids, phages, cosmids and the like.
  • the terms “cell”, “cell line” and “cell culture” are used interchangeably and all such designations include progeny.
  • the terms “transformant” and “transformed cell” include the primary subject cell and cultures derived therefrom, regardless of the number of transfers. It should also be understood that all progeny may not be precisely identical in DNA content due to deliberate or unintentional mutations. Mutant progeny having the same function or biological activity as screened for in the originally transformed cells are included. Where a different name is intended, it is clear from the context.
  • Embodiment the preparation of transformation type GPR75
  • the protein structure prediction software used is AlphaFold local version (v2.1.0) and RoseTTAFold.
  • Wild-type GPR75 has a long random sequence region, which is not suitable for protein structure analysis.
  • the prediction results of the transmembrane region are very similar.
  • the reliability of the random sequence region is very low, so we truncated the original random sequence region of the GPR75 receptor, leaving the key seven transmembrane regions of the receptor (Fig. 1B).
  • the wild-type and its truncated sequences are shown below (see SEQ ID NO:1 for details), truncated between the fifth transmembrane helix and the sixth transmembrane helix of wild-type GPR75, and delete (delete) the wild-type GPR75 N-terminal and The random sequence at the C-terminal and the random sequence between the fifth transmembrane helix and the sixth transmembrane helix of wild-type GPR75.
  • the single underline is the amino acid sequence retained in the modified GPR75, which correspond to the first to fifth transmembrane helices from the N-terminus of wild-type GPR75, and the N-terminus of wild-type GPR75.
  • the sixth to seventh transmembrane helices from the end; the parts in italics are the sequences retained in the truncated GPR75 and deleted in the modified GPR75.
  • BRIL fusion protein derived from bacterial soluble cytochrome b562 to perform fusion junctions at the fifth and sixth transmembrane helices (Figure 2), which have four transmembrane helices and have been used in multiple GPCR Crystal (such as PDB ID: 7F83, 7VOD, 6LPJ, 6KO5, 6OS0, etc.) and electron microscope structure (such as PDB ID: 7S8O, 6WW2, 6USF, etc.) are used in the analysis.
  • Using the BRIL fusion protein can increase the size of the extracellular region of the remodeled GPR75, which can be used as a marker in electron microscope structure analysis.
  • the fusion site of BRIL fusion protein needs to be optimized.
  • 16 sites were screened for the fusion site of the BRIL fusion protein ( Figure 3).
  • this example selected the transformation that can form a stable helix with the fifth and sixth transmembrane helices sequence, which fuses the fifth and sixth transmembrane helices.
  • the BRIL fusion protein sequence (SEQ ID NO: 2) adopted in the transformed GPR75 in the present embodiment:
  • sequence of the ⁇ 2 adrenergic receptor adopted in the modified GPR75 in this embodiment is (SEQ ID NO:4):
  • sequence of the transformed GPR75 with the ⁇ 2 adrenoreceptor sequence added is as follows (SEQ ID NO: 5)
  • the N-terminal and C-terminal of the modified GPR75 were designed with Flag tag sequence, Strep tag sequence and 6 ⁇ His tag sequence, so as to facilitate the purification of the heterologously expressed modified GPR75.
  • the sequence of the protein is designed with multiple restriction sites (3C/TEV) and the fusion sequence of Sortase A, which can facilitate the reverse purification of the purified protein in different schemes, matrix immobilization, and Site-specific fluorescent labels, etc., the modified sequence will be conveniently applied to nucleic acid-encoded small molecule drug libraries, drug binding experiments, etc.
  • modified GPR75 in this example is as follows from the N-terminal to the C-terminal:
  • MKTIIALSYIFCLVFA SEQ ID NO:6
  • MGQPGNGSAFLLAPNRSHAPDHDV ⁇ 2 adrenergic receptor sequence
  • TEV protease cleavage site (ENLYFQG; SEQ ID NO:8);
  • Sortase A fusion sequence (LPETG; SEQ ID NO:9); it is a "USB-like interface", the attachment site of Sortase A enzyme.
  • the HRV 3C protease cleavage site and the 6 ⁇ His tag sequence are connected by GS.
  • the complete amino acid sequence of the modified GPR75 (GPR75-M) is (SEQ ID NO: 13):
  • Nucleic acid sequence (SEQ ID NO: 14) after GPR75-M codon optimization (based on sf9 insect cells):
  • amino acid sequence (SEQ ID NO: 15) of truncated GPR75 is amino acid sequence (SEQ ID NO: 15) of truncated GPR75:
  • the truncated GPR75 there is no BRIL fusion protein sequence, and the random sequence at the N-terminus of the wild-type GPR75 is not deleted, and other signal peptides, enzyme cleavage sites, and tag sequences are the same as those of the modified GPR75.
  • the recombinant pFastbac plasmid containing the gene of interest was introduced into Escherichia coli DH10Bac competent cells (Bomei De Biology), in the presence of 50 ⁇ g/mL kanamycin (BioBomei), 7 ⁇ g/mL gentamicin In LB solid medium of 10 ⁇ g/mL tetracycline (BioBomei), 200 ⁇ g/mL X-gal (inalco), 40 ⁇ g/mL IPTG (inalco), cultured at 37° C. for 48 hours.
  • the P2-generation recombinant baculovirus was used to transfect 20 mL of sf9 insect cells at a density of 4 ⁇ 10 6 /mL at a ratio of 1:50, and the cells were cultured at 27°C and 110 rpm for 48 hours. After culturing, samples were taken for Western blot detection to determine the expression of the target protein.
  • the P2-generation recombinant baculovirus was used to transfect 1 L of sf9 insect cells at a density of 4 ⁇ 10 6 /mL at a ratio of 1:50, and the cells were cultured for 48 hours at 27°C and 110 rpm.
  • buffer solution (Buffer) A-F specific composition is as follows:
  • Buffer A 20mM Tris, pH 7.5, 2mg/mL iodoacetamide (Iodoacetamide);
  • Buffer B 20mM Tris, pH 7.5, 1mg/mL iodoacetamide, 750mM NaCl, 0.5% LMNG, 0.03% CHS, 0.2% sodium cholate, 1/1000 protease inhibitor;
  • Buffer C 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 20mM imidazole (Imidazole);
  • Buffer D 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 30mM imidazole;
  • Buffer E 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 250mM imidazole;
  • Buffer F 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor;
  • Buffer G 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 0.13mg/mL Flag peptide;
  • Buffer H 20mM Tris, pH 7.5, 150mM NaCl, 0.00075% LMNG, 0.0001% CHS, 0.00025% GDN, 1/1000 protease inhibitor, 100 ⁇ M
  • Tris(2-carboxyethyl)phosphine TCEP
  • Test example 1 activity identification of modified GPR75 protein
  • this test example utilizes G protein-coupled receptors to activate the downstream Gq protein and promote the hydrolysis efficiency of Gq protein to GTP to be measured 21 .
  • the experimental steps were carried out according to the instructions of the GTPase-Glo TM Assay (Promega) kit.
  • the principle of this method is that when 10 ⁇ M GTP molecules are added to the experimental system, since the Gq protein has GTP hydrolysis activity, the GTP molecules in the system will be gradually consumed.
  • the modified GPR75 protein without ligand binding has a background level of activation activity, which will accelerate the consumption of GTP in the system.
  • the buffer conditions used in the experiment were configured: 20 mM Tris pH 7.5, 100 mM NaCl, 0.01% MNG, 100 ⁇ M TCEP, 5 mM MgCl 2 .
  • the purified control buffer, Gq protein, modified GPR75 protein, modified GPR75 protein-Gq protein complex, and modified GPR75 protein-Gq protein-20-HETE ligand complex were mixed with 10 ⁇ M GTP , wherein the concentrations of the modified GPR75 protein and Gq protein were both 3 ⁇ M, and the concentration of 20-HETE was 10 ⁇ M.
  • the above samples were incubated at room temperature for 2 hours.
  • the Glo reaction solution dilute the Glo reagent in the kit 500 times into double distilled water, and add 10 ⁇ M ADP molecules. Take 20 ⁇ L of the Glo reaction solution and add it to the 5 samples in the previous step at a volume ratio of 1:1, and incubate for 30 minutes. Subsequently, 40 ⁇ L of Glo detection solution was added to the previous step at a volume ratio of 1:1. Finally, the samples were dispensed into 384-well plates and read with an Ensight microplate reader (perkinelmer).
  • FIG. 8A shows that the engineered GPR75 protein in the state of no ligand binding has a certain level of background activity.
  • the ligand 20-HETE of the GPR75 protein reported in the literature showed the effect of inhibiting the activation of the modified GPR75 protein.
  • the IC 50 of 20-HETE was determined in this test example ( FIG. 8B ), and the result showed that the IC 50 value of 20-HETE was about 2nM. This shows that the modified GPR75 has a certain activity.
  • the modified GPR75 provided by the present disclosure can bind to the ligand of wild-type GPR75, such as 20-HETE, and can be applied to GPR75 structure analysis, GPR75 activity analysis, and related nucleic acid coding Small molecule library screening, computer-aided drug design and drug screening, etc. And as demonstrated in the examples, compared with wild-type and truncated GPR75, the modified GPR75 provided by the present disclosure has a higher expression level, which is suitable for subsequent applications such as structural analysis.
  • Test example 2 The modified GPR75 protein is used for structural analysis
  • this test example incubated the modified GPR75 protein prepared and purified in the examples with the fab fragment of anti-BRIL, and obtained the purification of the complex through molecular sieves (Fig. 9A). The purified complex was verified in further SDS-PAGE experiments (Fig. 9B). And, as shown in Figure 9C, 2D sorting of single particles by cryo-EM revealed the signature of receptors and complexes with anti-BRIL fab fragments.
  • Test examples 1 and 2 show that in the modified GPR75, the GPR75 protein partially retains the ligand-binding site of the wild-type GPR75, and the BRIL fusion protein can also be recognized by its antibody, which can be used as a marker in the analysis of the electron microscope structure. Subsequently, in this test example, the obtained stable complex was frozen for sample preparation, electron microscope data collection and structural analysis. The single-particle two-dimensional classification data showed that the modified 75 protein-anti-BRIL fab fragment formed a relatively stable complex, which laid a solid foundation for further structural analysis of the modified GPR75 protein.

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Abstract

Provided are a modified GPR75 and the uses thereof. Provided is the modified GPR75, the modified GPR75 comprising: a first domain, the first domain comprising an amino acid sequence derived from a β2 adrenoceptor; and a second domain, the second domain being a domain in which an irregular sequence between the fifth transmembrane helix and the sixth transmembrane helix and irregular sequences at the N-terminus and the C-terminus are deleted from a wild-type GPR75, and an amino acid sequence derived from BRIL fusion protein is connected between the fifth transmembrane helix and the sixth transmembrane helix. The provided modified GPR75 can be used for GPR75 structure analysis, fluorescent molecular labeling, fusion of phosphorylated polypeptides or signal proteins, GPR75 activity analysis, nucleic acid encoded small molecule library screening, computer-aided drug design and drug screening.

Description

改造型GPR75及其用途Modified GPR75 and its application
优先权和相关申请Priority and related applications
本公开要求2022年3月4日提交的名称为“改造型GPR75及其用途”的中国专利申请202210205737.1的优先权,该申请包括附录在内的全部内容作为参考并入本申请。This disclosure claims the priority of the Chinese patent application 202210205737.1 filed on March 4, 2022, entitled "Modified GPR75 and Its Uses", and the entire content of this application including the appendix is incorporated into this application by reference.
技术领域technical field
本公开属于生物技术领域,更具体地,本公开涉及一种改造型GPR75及其用途。The disclosure belongs to the field of biotechnology, and more specifically, the disclosure relates to a modified GPR75 and its use.
背景技术Background technique
G蛋白偶联受体是人体最大的一类细胞膜受体。人类基因组计划的完成,为分析该家族成员的分布、序列及功能提供了基础 1。人体有超过800个G蛋白偶联受体成员,其中约有370个非嗅觉类G蛋白偶联受体和超过400个嗅觉类受体。这些G蛋白偶联受体被分为六个亚家族,视紫红质家族(rhodopsin family)、粘附家族(secretin family)、分泌素受体家族(secretin family)、谷氨酸受体家族(glutamate family)、卷曲家族(Frizzled family)以及味觉家族(Tasted family)。不同的G蛋白偶联受体参与介导生物体的一系列重要的生物功能,从化学感知识别(视觉、嗅觉、味觉)到内分泌分子相关的调节等 2。功能的重要性源于该家族的受体能够识别多样性的配体,常见的配体包括单胺类(多巴胺、去甲肾上腺素、血清素、组胺),氨基酸递质类(谷氨酸、γ-氨基丁酸),多肽类(速激肽类、神经降压素、生长激素抑制素、胰酶分泌素、胰高血糖素样肽-1、内分泌释放因子),脂衍生物类(溶血磷脂酸、磷酸鞘氨醇、类花生酸)和气味等。统计表明,FDA批准上市的临床药物中,约占总数35%的药物靶向约135个不同的G蛋白偶联受体 3。正在进行的临床研究中,有20%以上的测试药物均靶向G蛋白偶联受体 4。尽管如此,有50%左右的非嗅觉类G蛋白偶联受体可能是潜在的疾病治疗靶点,仍然没有相关的新药临床测试,这有待进一步的开拓和研究。由此可见,G蛋白偶联受体家族成员在新药研发领域的价值和潜力。 G protein-coupled receptors are the largest class of cell membrane receptors in the human body. The completion of the Human Genome Project provides a basis for analyzing the distribution, sequence and function of the family members 1 . There are more than 800 G protein-coupled receptor members in the human body, including about 370 non-olfactory G protein-coupled receptors and more than 400 olfactory receptors. These G protein-coupled receptors are divided into six subfamilies, rhodopsin family, adhesion family, secretin receptor family, glutamate receptor family family), Frizzled family, and Tasted family. Different G protein-coupled receptors are involved in mediating a series of important biological functions of organisms, from chemosensory recognition (vision, smell, taste) to the regulation of endocrine molecules, etc. 2 . The importance of function stems from the fact that the receptors of this family can recognize a variety of ligands, common ligands include monoamines (dopamine, norepinephrine, serotonin, histamine), amino acid transmitters (glutamate , γ-aminobutyric acid), polypeptides (tchykinins, neurotensin, somatostatin, trypsin secretin, glucagon-like peptide-1, endocrine releasing factor), lipid derivatives ( Lysophosphatidic acid, sphingosine phosphate, eicosanoid) and odor etc. Statistics show that about 35% of the clinical drugs approved by the FDA target about 135 different G protein-coupled receptors 3 . In ongoing clinical studies, more than 20% of the drugs tested target G protein-coupled receptors 4 . Nevertheless, about 50% of non-olfactory G protein-coupled receptors may be potential targets for disease treatment, and there is still no relevant new drug clinical test, which needs further development and research. This shows the value and potential of G protein-coupled receptor family members in the field of new drug research and development.
GPR75(G蛋白偶联受体75,G protein-coupled receptor 75)属于G蛋白偶联受体家族成员,其内源性激动剂配体包括代谢产物20-HETE 5以及趋化因子CCL5/RANTES 6。GPR75在大量细胞类型中具有表达分布,其中在胰岛中表达的GPR75,通过CCL5的激活,调控胰岛素释放,参与调控人体内的葡萄糖稳态 6。另外,发表于科学杂志的大数据研究表明,GPR75基因参与调节小鼠的肥胖,是临床上重要的肥胖治疗靶点 7。人类的GPR75基因含有540个氨基酸,具有G蛋白偶联受体家族成员典型的7次跨膜特征 8,受体C端具有约140个氨基酸长度的无规则卷曲序列。由于其较长的无规则卷曲,以及缺少天冬氨酸/精氨酸/酪氨酸(DRY)模体,被归类于非典型的趋化因子受体(ACRs) 9。CCL5激活细胞膜上的GPR75受体造成细胞内磷脂酶C介导的IP3(三磷酸肌醇,inositol triphosphate)及Ca 2+浓度上调 10GPR75 (G protein-coupled receptor 75, G protein-coupled receptor 75) is a member of the G protein-coupled receptor family, and its endogenous agonist ligands include metabolite 20-HETE 5 and chemokine CCL5/RANTES 6 . GPR75 has an expression distribution in a large number of cell types, among which GPR75 expressed in pancreatic islets regulates insulin release through the activation of CCL5, and participates in the regulation of glucose homeostasis in the human body6 . In addition, big data studies published in scientific journals have shown that the GPR75 gene is involved in the regulation of obesity in mice and is a clinically important target for obesity treatment 7 . The human GPR75 gene contains 540 amino acids and has the typical 7 transmembrane characteristics of members of the G protein-coupled receptor family 8 . The C-terminus of the receptor has a random coil sequence of about 140 amino acids in length. Due to their longer random coils and lack of an aspartate/arginine/tyrosine (DRY) motif, they are classified as atypical chemokine receptors (ACRs) 9 . CCL5 activates the GPR75 receptor on the cell membrane, resulting in the up-regulation of intracellular phospholipase C-mediated IP3 (inositol triphosphate, inositol triphosphate) and Ca 2+ concentrations 10 .
2017年,诺贝尔化学奖授予三位在冷冻电镜技术开发过程中作出卓越贡献的科学家 11,这标志着结构生物学领域进入一个新时代 12。同年,冷冻电镜技术被应用于受体-G蛋白复合物的结构解析。随后的4年时间,相继有大约45个独立的受体-G蛋白复合物的高分辨率结构被解析 13In 2017, the Nobel Prize in Chemistry was awarded to three scientists who made outstanding contributions to the development of cryo-electron microscopy11, which marked a new era in the field of structural biology12. In the same year, cryo-electron microscopy was applied to the structural analysis of the receptor-G protein complex. Over the ensuing 4-year period, approximately 45 independent high-resolution structures of receptor-G protein complexes were successively resolved13 .
基于结构的药物设计是对传统新药研发方案的革新 14,15。近20年来,G蛋白偶联受体结构研究领域发生天翻地覆的变化。2000年,第一个高分辨率G蛋白偶联受体-视紫红质的结构被解析,为该领域的结构和功能研究奠定了基础 16。2007年,Brian Kobilka教授与其合作者利用抗体稳定受体的构象或者利用融合T4溶菌酶的方法 17,18,成功解析了β2肾上腺素受体的高分辨率晶体结构。2011年,Brian Kobilka教授实验室进一步地解析了激动剂-β2肾上腺素受体-Gs蛋白三元复合物的晶体结构 19,他也因此与他导师Robert J.Lefkowitz共享了2012年诺贝尔化学奖。在传统的蛋白质晶体学时代,约50个左右独立的G蛋白偶联受体晶体结构被解析。高分辨率的结构信息,为基于结构的药物设计奠定了基础。最著名的例子之一是,Brian Kobilka教授与其合作者利用μ阿片受体的高分辨率晶体结构,对超过300万个小分子化合物进行分子对接,最终获得了具有较低副反应的阿片类镇痛药物PZM21 20Structure-based drug design is a revolution in traditional new drug development approaches14,15 . In the past 20 years, the field of G protein-coupled receptor structure research has undergone tremendous changes. In 2000, the first high - resolution structure of G protein-coupled receptor-rhodopsin was resolved, laying the foundation for structural and functional studies in this field16. In 2007, Professor Brian Kobilka and his collaborators successfully resolved the high-resolution crystal structure of the β2 adrenoceptor by using antibodies to stabilize the conformation of the receptor or using the method of fusing T4 lysozyme17,18 . In 2011, Professor Brian Kobilka's laboratory further analyzed the crystal structure of the agonist-β2 adrenergic receptor-Gs protein ternary complex19 , and he shared the 2012 Nobel Prize in Chemistry with his mentor Robert J. Lefkowitz . In the era of traditional protein crystallography, about 50 or so independent crystal structures of G protein-coupled receptors have been solved. High-resolution structural information lays the foundation for structure-based drug design. One of the most famous examples is that Professor Brian Kobilka and his collaborators used the high-resolution crystal structure of the μ opioid receptor to carry out molecular docking of more than 3 million small molecule compounds, and finally obtained an opioid drug with lower side effects. pain drug PZM21 20 .
在AI赋能创新药研发的时代,如何利用蛋白质的序列信息进行结构解析工作,并基于计算机辅助的药物设计(computer-aided drug design,CADD)或基于分子结构的药物设计(structure-based drug design,SBDD)思路,进行活性小分子药物的设计和筛选,亟需创新性的新思维和新方案。In the era of AI-enabled innovative drug research and development, how to use protein sequence information for structural analysis, and how to use computer-aided drug design (CADD) or molecular structure-based drug design (structure-based drug design) , SBDD) ideas, the design and screening of active small molecule drugs urgently need innovative new thinking and new solutions.
为了针对GPR75受体开发靶向性的药物分子,我们需要对GPR75受体进行结构解析工作。近年来,领域内主流的结构研究手段是利用激动剂-G蛋白偶联受体-G蛋白形成三元复合物,解析受体的激活态结构。据报道,人体内的GPR75受体在控制肥胖方面具有重要的作用,人类GPR75受体截断体表现出较低的肥胖比例。在鼠内敲除GPR75能够显著的抑制肥胖,并增强高脂肪饮食模型鼠的血糖控制 7。抑制GPR75受体的活性被建议为临床上控制肥胖的一种策略。为了能够靶向GPR75受体并开发具有临床药用价值分子,需要使用抑制剂。因此,获得非激活态的受体结构,并针对其开发特异性的受体活性抑制剂极具挑战。 In order to develop targeted drug molecules for the GPR75 receptor, we need to analyze the structure of the GPR75 receptor. In recent years, the mainstream structural research method in the field is to use agonist-G protein-coupled receptor-G protein to form a ternary complex to analyze the activated state structure of the receptor. It has been reported that the GPR75 receptor in the human body plays an important role in controlling obesity, and human GPR75 receptor truncates show a lower proportion of obesity. Knocking out GPR75 in mice can significantly suppress obesity and enhance blood sugar control in high-fat diet model mice 7 . Inhibition of the activity of the GPR75 receptor has been suggested as a strategy to control obesity clinically. In order to be able to target the GPR75 receptor and develop clinically useful molecules, inhibitors are required. Therefore, it is extremely challenging to obtain the structure of the inactive receptor and develop specific inhibitors of receptor activity.
发明内容Contents of the invention
发明要解决的问题The problem to be solved by the invention
由于GPR75受体的临床药用价值分子需要抑制剂,而目前缺少其非激活态的受体结构,本公开提供了一种改造型GPR75。Because GPR75 receptors are clinically valuable molecules that require inhibitors, and currently lack the receptor structure in its inactive state, the present disclosure provides a modified GPR75.
用于解决问题的方案solutions to problems
本公开的第一方面提供了一种改造型GPR75,其包含:A first aspect of the present disclosure provides a modified GPR75 comprising:
第一结构域,所述第一结构域包含源自β2肾上腺素受体的氨基酸序列;和,a first domain comprising an amino acid sequence derived from a β2 adrenoceptor; and,
第二结构域,所述第二结构域为在野生型GPR75中缺失第五跨膜螺旋和第六跨膜螺旋之间的无规则序列以及N端、C端的无规则序列、并通过源自BRIL融合蛋白的氨基酸序列连接在所述第五跨膜螺旋和所述第六跨膜螺旋之间的结构域。The second structural domain, the second structural domain is the random sequence between the fifth transmembrane helix and the sixth transmembrane helix and the random sequence at the N-terminal and C-terminal in the wild-type GPR75, and is derived from BRIL The amino acid sequence of the fusion protein connects the domain between the fifth transmembrane helix and the sixth transmembrane helix.
在本公开的一些实施方案中,所述第一结构域包含如SEQ ID NO:4所示的氨基酸序列或与SEQ ID NO:4所示的氨基酸序列具有至少80%同源性的氨基酸序列。In some embodiments of the present disclosure, the first domain comprises the amino acid sequence shown in SEQ ID NO: 4 or an amino acid sequence having at least 80% homology to the amino acid sequence shown in SEQ ID NO: 4.
在本公开的一些实施方案中,所述第二结构域包含如SEQ ID NO:3所示的氨基酸序列或与SEQ ID NO:3所示的氨基酸序列具有至少80%同源性的氨基酸序列。In some embodiments of the present disclosure, the second domain comprises the amino acid sequence shown in SEQ ID NO: 3 or an amino acid sequence having at least 80% homology to the amino acid sequence shown in SEQ ID NO: 3.
在本公开的一些实施方案中,所述改造型GPR75包含以下序列中的一种或多种:In some embodiments of the present disclosure, the engineered GPR75 comprises one or more of the following sequences:
(i)如SEQ ID NO:5所示的氨基酸序列;(i) amino acid sequence as shown in SEQ ID NO:5;
(ii)与SEQ ID NO:5所示的氨基酸序列具有至少80%、82%、85%、87%、90%、92%、95%、96%、97%、98%或99%同一性的氨基酸序列,并且其保留如SEQ ID NO:5所示的氨基酸序列的结合特异性配体的功能;(ii) at least 80%, 82%, 85%, 87%, 90%, 92%, 95%, 96%, 97%, 98%, or 99% identity to the amino acid sequence shown in SEQ ID NO:5 The amino acid sequence, and it retains the function of binding the specific ligand of the amino acid sequence shown in SEQ ID NO:5;
(iii)在SEQ ID NO:5所示的氨基酸序列中添加、取代、缺失或插入1个或多个氨基酸残基的氨基酸序列,并且其保留如SEQ ID NO:5所示的氨基酸序列的结合特异性配体的功能;或者,(iii) an amino acid sequence in which one or more amino acid residues are added, substituted, deleted or inserted in the amino acid sequence shown in SEQ ID NO: 5, and it retains the combination of the amino acid sequence shown in SEQ ID NO: 5 function of the specific ligand; or,
(iv)由核苷酸序列编码的氨基酸序列,所述核苷酸序列与编码如SEQ ID NO:5所示的氨基酸序列的多核苷酸序列在严格条件下杂交,并且所述氨基酸序列保留以SEQ ID NO:5所示的氨基酸序列的结合特异性配体的功能,所述严格条件是中等严格条件,中-高严格条件,高严格条件或非常高严格条件。(iv) an amino acid sequence encoded by a nucleotide sequence that hybridizes to a polynucleotide sequence encoding an amino acid sequence as shown in SEQ ID NO: 5 under stringent conditions, and the amino acid sequence remains in The amino acid sequence shown in SEQ ID NO:5 binds to the function of a specific ligand, and the stringent conditions are medium stringent conditions, medium-high stringent conditions, high stringent conditions or very high stringent conditions.
在本公开的一些实施方案中,所述改造型GPR75还包含标签、蛋白酶切割位点、信号肽、肽接头或其任意组合。In some embodiments of the present disclosure, the engineered GPR75 further comprises a tag, a protease cleavage site, a signal peptide, a peptide linker, or any combination thereof.
在本公开的一些实施方案中,所述改造型GPR75在其N端和/或C端包含标签。In some embodiments of the present disclosure, the engineered GPR75 comprises a tag at its N-terminus and/or C-terminus.
在本公开的一些实施方案中,所述改造型GPR75在其N端包含信号肽。In some embodiments of the present disclosure, the engineered GPR75 comprises a signal peptide at its N-terminus.
在本公开的一些实施方案中,所述蛋白酶切割位点位于相邻的两个元件之间;所述元件选自第一结构域、第二结构域、标签、信号肽和肽接头。In some embodiments of the present disclosure, the protease cleavage site is located between two adjacent elements; the elements are selected from the group consisting of a first domain, a second domain, a tag, a signal peptide and a peptide linker.
在本公开的一些实施方案中,所述的改造型GPR75包含以下序列中的一种或多种:In some embodiments of the present disclosure, the modified GPR75 comprises one or more of the following sequences:
(i)如SEQ ID NO:13所示的氨基酸序列;(i) amino acid sequence as shown in SEQ ID NO:13;
(ii)与SEQ ID NO:13所示的氨基酸序列具有至少80%、82%、85%、87%、90%、92%、95%、96%、97%、98%或99%同一性的氨基酸序列,并且其保留如SEQ ID NO:13所示的氨基酸序列的结合特异性配体的功能;(ii) at least 80%, 82%, 85%, 87%, 90%, 92%, 95%, 96%, 97%, 98% or 99% identity to the amino acid sequence shown in SEQ ID NO: 13 The amino acid sequence, and it retains the function of binding the specific ligand of the amino acid sequence shown in SEQ ID NO:13;
(iii)在SEQ ID NO:13所示的氨基酸序列中添加、取代、缺失或插入1个或多个氨基酸残基的氨基酸序列,并且其保留如SEQ ID NO:13所示的氨基酸序列的结合特异性配体的功能;或者,(iii) an amino acid sequence in which 1 or more amino acid residues are added, substituted, deleted or inserted in the amino acid sequence shown in SEQ ID NO: 13, and which retains the combination of the amino acid sequence shown in SEQ ID NO: 13 function of the specific ligand; or,
(iv)由核苷酸序列编码的氨基酸序列,所述核苷酸序列与编码如SEQ ID NO:13所示的氨基酸序列的多核苷酸序列在严格条件下杂交,并且所述氨基酸序列保留以SEQ ID No:13所示的氨基酸序列的结合特异性配体的功能,所述严格条件是中等严格条件,中-高严格条件,高严格条件或非常高严格条件。(iv) an amino acid sequence encoded by a nucleotide sequence that hybridizes to a polynucleotide sequence encoding an amino acid sequence as shown in SEQ ID NO: 13 under stringent conditions, and the amino acid sequence is retained by The amino acid sequence shown in SEQ ID No: 13 binds to the function of a specific ligand, and the stringent conditions are medium stringent conditions, medium-high stringent conditions, high stringent conditions or very high stringent conditions.
本公开的第二方面提供了一种多核苷酸,其编码本公开第一方面所述的改造型GPR75。The second aspect of the present disclosure provides a polynucleotide encoding the modified GPR75 described in the first aspect of the present disclosure.
本公开的第三方面提供了一种表达载体,其包含本公开第二方面所述的多核苷酸。The third aspect of the present disclosure provides an expression vector comprising the polynucleotide described in the second aspect of the present disclosure.
本公开的第四方面提供了一种宿主细胞,其包含本公开第三方面所述的表达载体。The fourth aspect of the present disclosure provides a host cell comprising the expression vector described in the third aspect of the present disclosure.
本公开的第五方面提供了如本公开第一方面所述的改造型GPR75、如本公开第二方面所述的多核苷酸、如本公开第三方面所述的表达载体或如本公开第四方面所述的宿主细胞在用于GPR75结构解析、荧光分子标记、磷酸化多肽或信号蛋白的融合、GPR75活性分析、核酸编码小分子库筛选、计算机辅助的药物设计和药物筛选中的用途。The fifth aspect of the present disclosure provides the modified GPR75 as described in the first aspect of the present disclosure, the polynucleotide as described in the second aspect of the present disclosure, the expression vector as described in the third aspect of the present disclosure, or the expression vector as described in the third aspect of the present disclosure. Use of the host cell described in the four aspects for GPR75 structural analysis, fluorescent molecular markers, fusion of phosphorylated polypeptides or signal proteins, GPR75 activity analysis, nucleic acid encoding small molecule library screening, computer-aided drug design and drug screening.
发明的效果The effect of the invention
在本公开创新性地结合分子结构预测、分子设计等思路,对原本不适用于非激活态结构研究的蛋白质序列进行截断、融合蛋白改造,并在N端融合24个氨基酸的β2肾上腺素受体序列的方法,提高受 体的稳定性和表达量。另外,我们在受体的N端和C端,分别进行了Flag标签序列,Strep标签序列以及6×His标签序列的设计,方便对异源表达的受体进行纯化。最后,本公开对蛋白的序列进行多酶切位点(3C/TEV)设计及Sortase A融合序列设计,可以方便后期根据需要对纯化后的蛋白进行不同方案的反向纯化、基质固定、以及位点特异性的荧光标记等,改造后的序列将方便地应用于核酸编码的小分子药物库、药物结合实验等。并且,本公开提供的改造型GPR75,相比野生型GPR75具有更好的稳定性和更高的表达量。In this disclosure, innovatively combining ideas such as molecular structure prediction and molecular design, the protein sequence that was originally not suitable for the study of the inactive state structure was truncated, the fusion protein was transformed, and a β2 adrenoceptor with 24 amino acids was fused at the N-terminus The sequence method can improve the stability and expression of the receptor. In addition, we designed the Flag tag sequence, Strep tag sequence and 6×His tag sequence at the N-terminal and C-terminal of the receptor, respectively, to facilitate the purification of heterologously expressed receptors. Finally, this disclosure designs the sequence of the protein with multiple enzyme cutting sites (3C/TEV) and the fusion sequence of Sortase A, which can facilitate the reverse purification, matrix immobilization, and positioning of the purified protein in different schemes later as needed. Spot-specific fluorescent labels, etc., the modified sequences will be conveniently applied to nucleic acid-encoded small molecule drug libraries, drug binding experiments, etc. Moreover, the modified GPR75 provided by the present disclosure has better stability and higher expression than wild-type GPR75.
附图说明Description of drawings
图1A和图1B为GPR75蛋白结构预测模型。图1A为全长GPR75的AlphaFold2和RoseTTAFold预测模型,图1B为GPR75的预测跨膜区。从图1A可见GPR75具有较长的无规则卷曲结构,不适合直接进行结构生物学研究。Figure 1A and Figure 1B are the prediction models of GPR75 protein structure. Figure 1A shows the AlphaFold2 and RoseTTAFold prediction models for full-length GPR75, and Figure 1B shows the predicted transmembrane region of GPR75. It can be seen from Figure 1A that GPR75 has a long random coil structure, which is not suitable for direct structural biology research.
图2为GPR75蛋白改造思路。首先,我们利用AlphaFold2预测结果,对GPR75跨膜区进行截断,并于第三个细胞内螺旋位置插入BRIL融合蛋白。随后,我们对融合位点进行逐步优化,选择最佳的融合位置作为融合蛋白的终版。Figure 2 shows the idea of GPR75 protein transformation. First, we truncated the transmembrane region of GPR75 and inserted the BRIL fusion protein at the third intracellular helical position by using the predicted results of AlphaFold2. Subsequently, we gradually optimized the fusion site and selected the best fusion site as the final version of the fusion protein.
图3为GPR75蛋白融合位点优化思路。Fig. 3 is the idea of optimizing the fusion site of GPR75 protein.
图4为GPR75蛋白融合位点优化的效果差异图。Figure 4 is a graph showing the difference in effect of GPR75 protein fusion site optimization.
图5为利用western blot检测野生型GPR75与改造型GPR75的表达量差异。图中显示GPR75野生型与改造型的Western blot结果,泳道1为GPR75野生型,泳道2为GPR75改造型,从Western blot结果可知,改造型GPR75的表达量显著提高。改造型GPR75具有更高的蛋白表达水平。野生型GPR75表达量极低,在同样的表达条件下,几乎不能被检测到。Figure 5 shows the difference in expression between wild-type GPR75 and modified GPR75 detected by western blot. The figure shows the Western blot results of GPR75 wild type and modified type. Lane 1 is GPR75 wild type, and lane 2 is GPR75 modified type. From the Western blot results, the expression level of modified GPR75 is significantly increased. The modified GPR75 has a higher protein expression level. The expression level of wild-type GPR75 is extremely low, and can hardly be detected under the same expression conditions.
图6为本公开实施例中的融合BRIL的改造型GPR75与截断型GPR75(无BRIL融合且未缺失野生型GPR75的N端无规则序列)凝胶过滤层析UV-280吸收峰比对。图中实线UV-280吸收峰为融合BRIL的改造型GPR75,虚线UV-280吸收峰为截断型GPR75。Fig. 6 is a gel filtration chromatography UV-280 absorption peak comparison between modified GPR75 fused with BRIL and truncated GPR75 (no BRIL fusion and no N-terminal random sequence deletion of wild-type GPR75) in an embodiment of the present disclosure. The solid UV-280 absorption peak in the figure is the modified GPR75 fused with BRIL, and the dotted UV-280 absorption peak is the truncated GPR75.
图7A和图7B为本公开实施例中的改造型GPR75的SDS-PAGE胶图(图7A)及冷冻数据照片(图7B)。纯化后的改造型GPR75纯度较高,冷冻制样的数据颗粒分散度好。Figure 7A and Figure 7B are the SDS-PAGE gel image (Figure 7A) and the photograph of frozen data (Figure 7B) of the modified GPR75 in the embodiment of the present disclosure. The purified modified GPR75 has higher purity, and the data particle dispersion of frozen sample preparation is good.
图8A和图8B为本公开测试例中的改造型GPR75的本底活性分析。无配体结合的改造型GPR75能够加速Gq蛋白的GTP水解活性,而配体20-HETE显示出抑制75蛋白活性的效果(图8A)。实验中,测量到20-HETE的IC 50约为2nM(图8B)。 8A and 8B are background activity analysis of modified GPR75 in test cases of the present disclosure. The modified GPR75 without ligand binding can accelerate the GTP hydrolysis activity of Gq protein, while the ligand 20-HETE showed the effect of inhibiting the activity of 75 protein (Fig. 8A). In the experiment, the IC50 of 20-HETE was measured to be about 2nM (Fig. 8B).
图9A至图9C为本公开测试例中的改造型GPR75与抗BRIL的fab片段进行复合物制备及冷冻数据分析。改造型GPR75与抗BRIL的fab片段在分子筛上出现共迁移的效果(图9A),SDS-PAGE进一步说明它们能够形成稳定的复合物(图9B)。冷冻电镜单颗粒二维分类显示出受体和与抗BRIL的fab片段的复合物特征(图9C)。Figures 9A to 9C show the complex preparation and frozen data analysis of the engineered GPR75 and the anti-BRIL fab fragment in the test example of the present disclosure. The engineered GPR75 and the anti-BRIL fab fragment co-migrate on molecular sieves (Fig. 9A), and SDS-PAGE further demonstrates that they can form a stable complex (Fig. 9B). Two-dimensional sorting of single particles by cryo-EM revealed features of the receptor and complexes with the anti-BRIL fab fragment (Fig. 9C).
具体实施方式Detailed ways
为了更容易理解本公开,以下具体定义了某些技术和科学术语。除非在本文中另有明确定义,本文使用的所有其它技术和科学术语都具有本公开所属领域的一般技术人员通常理解的含义。For easier understanding of the present disclosure, certain technical and scientific terms are specifically defined below. Unless clearly defined otherwise herein, all other technical and scientific terms used herein have the meaning commonly understood by one of ordinary skill in the art to which this disclosure belongs.
本说明书中,使用“数值A~数值B”表示的数值范围是指包含端点数值A、B的范围。In this specification, the numerical range represented by "numerical value A - numerical value B" means the range which includes numerical value A and B of an end point.
本说明书中,使用“基本上”或“实质上”表示与理论模型或理论数据的标准偏差在5%、优选为3%、更优选为1%范围以内。In this specification, the use of "substantially" or "substantially" means that the standard deviation from the theoretical model or theoretical data is within 5%, preferably 3%, more preferably within 1%.
本说明书中,使用“可以”表示的含义包括了进行某种处理以及不进行某种处理两方面的含义。In this specification, the meaning expressed by "may" includes the meaning of performing certain processing and not performing certain processing.
本说明书中,“任选的”或“任选地”是指接下来描述的事件或情况可发生或可不发生,并且该描述包括该事件发生的情况和该事件不发生的情况。In this specification, "optional" or "optionally" means that the next described event or situation may or may not occur, and that the description includes situations where the event occurs and situations where the event does not occur.
本说明书中,所提及的“一些具体/优选的实施方案”、“另一些具体/优选的实施方案”、“实施方案”等是指所描述的与该实施方案有关的特定要素(例如,特征、结构、性质和/或特性)包括在此处所述的至少一种实施方案中,并且可存在于其它实施方案中或者可不存在于其它实施方案中。另外,应理解,所述要素可以任何合适的方式组合在各种实施方案中。In this specification, references to "some specific/preferred embodiments", "other specific/preferred embodiments", "embodiments" and the like refer to specific elements described in relation to the embodiments (for example, A feature, structure, property, and/or characteristic) is included in at least one embodiment described herein, and may or may not be present in other embodiments. In addition, it is to be understood that the described elements may be combined in any suitable manner in the various embodiments.
根据本公开,术语“多肽”、“蛋白质”、“肽”在本文中可互换的使用,指任何长度的氨基酸的聚合形态,可包括编码的和非编码的氨基酸,化学或生物化学修饰的或衍生的氨基酸,和具有相似的肽骨架的多肽。According to the present disclosure, the terms "polypeptide", "protein", and "peptide" are used interchangeably herein to refer to a polymeric form of amino acids of any length, which may include encoded and non-encoded amino acids, chemically or biochemically modified or derived amino acids, and polypeptides with similar peptide backbones.
根据本公开,术语“核酸分子”、“多核苷酸”、“多聚核酸”、“核酸”可互换的使用,指任何长度的核苷酸的聚合形态,不论是脱氧核糖核苷酸或核糖核苷酸,或其类似物。多核苷酸可具有任何三维结构,可实施任何已知或未知的功能。多核苷酸的非限制例子包括基因、基因片段、外显子、内含子、信使RNA(mRNA)、转运RNA、核糖体RNA、核酶、cDNA、重组多核苷酸、分支多核苷酸、质粒、载体、任何序列的分离的DNA、控制区、任何序列的分离的RNA、核酸探针和引物。核酸分子可以是线性或环状的。According to this disclosure, the terms "nucleic acid molecule", "polynucleotide", "polynucleic acid", and "nucleic acid" are used interchangeably to refer to a polymeric form of nucleotides of any length, whether deoxyribonucleotides or Ribonucleotides, or analogs thereof. A polynucleotide can have any three-dimensional structure and can perform any known or unknown function. Non-limiting examples of polynucleotides include genes, gene fragments, exons, introns, messenger RNA (mRNA), transfer RNA, ribosomal RNA, ribozymes, cDNA, recombinant polynucleotides, branched polynucleotides, plasmids , vectors, isolated DNA of any sequence, control regions, isolated RNA of any sequence, nucleic acid probes and primers. Nucleic acid molecules can be linear or circular.
根据本公开,术语“G蛋白偶联受体”或“GPCR”或“GPR”指能够通过G蛋白途径和/或抑制蛋白途径,将信号从细胞外部传递到细胞内部的跨膜受体。数以百计的此类受体是本领域已知的;参见例如Fredriksson等人,Mol.Pharmacol.63:1256-1272,2003,以及Vassilatis,D.K.,Proc Natl Acad Sci USA 100:4903-4908(2003),其各自在此引入作为参考。G蛋白偶联受体是享有共同结构基序的多肽,具有7个在22至24个疏水氨基酸之间的区域,所述区域形成7个α螺旋,每个螺旋跨越细胞膜。通过编号鉴别每个跨越,即,跨膜-1(TM1)、跨膜-2(TM2)等,在发明中,也可称为第一跨膜螺旋、第二跨膜螺旋等。还通过在细胞膜外部或“胞外”侧的跨膜-2和跨膜-3、跨膜-4和跨膜-5,以及跨膜-6和跨膜-7之间的氨基酸区域连接跨膜螺旋,所述区域分别被称为“胞外”区1、2和3(EC1、EC2和EC3)。还通过在细胞膜内部或“胞内”侧的跨膜-1和跨膜-2、跨膜-3和跨膜-4、以及跨膜-5和跨膜-6之间的氨基酸区域连接跨膜螺旋,所述区域分别被称为“胞内”区1、2和3(IC1、IC2和IC3)。受体的“羧基”(“C”)末端位于细胞内的胞内空间,受体的“氨基”(“N”)末端位于细胞外的胞外空间。任何上述区域都可以通过分析GPCR的一级氨基酸序列来方便的鉴别。According to the present disclosure, the term "G protein-coupled receptor" or "GPCR" or "GPR" refers to a transmembrane receptor capable of transmitting a signal from the outside of the cell to the inside of the cell through the G protein pathway and/or the arrestin pathway. Hundreds of such receptors are known in the art; see, for example, Fredriksson et al., Mol. Pharmacol. 63:1256-1272, 2003, and Vassilatis, D.K., Proc Natl Acad Sci USA 100:4903-4908 ( 2003), each of which is incorporated herein by reference. G protein-coupled receptors are polypeptides sharing a common structural motif with seven regions of between 22 and 24 hydrophobic amino acids that form seven alpha helices, each spanning the cell membrane. Each span is identified by a number, ie, transmembrane-1 (TM1), transmembrane-2 (TM2), etc., which in the invention may also be referred to as first transmembrane helix, second transmembrane helix, etc. The transmembrane is also linked by amino acid regions between transmembrane-2 and transmembrane-3, transmembrane-4 and transmembrane-5, and transmembrane-6 and transmembrane-7 on the outer or "extracellular" side of the cell membrane helix, the regions are referred to as "extracellular" regions 1, 2 and 3 (EC1, EC2 and EC3), respectively. The transmembrane is also linked by amino acid regions between transmembrane-1 and transmembrane-2, transmembrane-3 and transmembrane-4, and transmembrane-5 and transmembrane-6 on the inner or "intracellular" side of the cell membrane helix, the regions are referred to as "intracellular" regions 1, 2 and 3 (IC1, IC2 and IC3), respectively. The "carboxy" ("C") terminus of the receptor is located in the intracellular space within the cell, and the "amino" ("N") terminus of the receptor is located in the extracellular space outside the cell. Any of the above regions can be readily identified by analysis of the primary amino acid sequence of the GPCR.
根据本公开,术语“配体”或“受体配体”意指胞内或胞外特异性结合GPCR分子。在不是限制性目的的条件下,配体可以是蛋白质、(多)肽、脂类、小分子、蛋白质支架、抗体、抗体片段、核酸、碳水化合物。配体可以是合成的或天然存在的。术语“配体”包括“天然配体”,这是天然GPCR的内源性的、天然的配体。在绝大部分情况下,配体是与细胞表达的GPCR接触(例如结合)时,增加或减少胞内应答的“调节剂”。作为调节剂的配体例子包括激动剂、部分激动剂、反向激动剂和拮抗剂。 其中,“激动剂”指通过结合受体,而增加受体的信号传递活性的配体。完全激动剂能够最大限度的刺激受体;部分激动剂即使在饱和浓度下也不能引发完全活性。部分激动剂还可以通过阻止结合更强力的激动剂,而作为“阻断剂”发挥功能。“拮抗剂”指结合受体而不刺激任何活性的配体。“拮抗剂”还被称为“阻断剂”,因其阻止其他配体结合的能力并且因此阻断激动剂诱导的活性。此外,“反向激动剂”指除了阻断激动剂效应外,还使受体的基础活性或组成活性降低至低于未结合配体的受体的拮抗剂。According to the present disclosure, the term "ligand" or "receptor ligand" means a molecule that specifically binds to a GPCR either intracellularly or extracellularly. Without limiting purpose, ligands may be proteins, (poly)peptides, lipids, small molecules, protein scaffolds, antibodies, antibody fragments, nucleic acids, carbohydrates. Ligands can be synthetic or naturally occurring. The term "ligand" includes "natural ligands", which are endogenous, natural ligands of native GPCRs. In most cases, a ligand is a "modulator" that increases or decreases the intracellular response upon contact with (eg, binds to) a GPCR expressed by the cell. Examples of ligands that act as modulators include agonists, partial agonists, inverse agonists, and antagonists. Herein, "agonist" refers to a ligand that increases the signaling activity of a receptor by binding to the receptor. Full agonists stimulate the receptor maximally; partial agonists do not elicit full activity even at saturating concentrations. Partial agonists can also function as "blockers" by preventing the binding of more potent agonists. "Antagonist" refers to a ligand that binds to a receptor without stimulating any activity. An "antagonist" is also called a "blocker" because of its ability to prevent the binding of other ligands and thus block agonist-induced activity. Furthermore, "inverse agonist" refers to an antagonist that, in addition to blocking the effects of the agonist, reduces the basal or constitutive activity of the receptor below that of the receptor without ligand bound.
根据本公开,所用氨基酸三字母代码和单字母代码如J.biol.chem,243,p3558(1968)中所述。According to the present disclosure, the three-letter and one-letter codes for amino acids are used as described in J.biol.chem, 243, p3558 (1968).
根据本公开,术语“宿主细胞”是指已向其中引入了表达载体的细胞。宿主细胞可包括细菌、微生物、植物或动物细胞。易于转化的细菌包括肠杆菌科(enterobacteriaceae)的成员,例如大肠杆菌(Escherichia coli)或沙门氏菌(Salmonella)的菌株;芽孢杆菌科(Bacillaceae)例如枯草芽孢杆菌(Bacillus subtilis);肺炎球菌(Pneumococcus);链球菌(Streptococcus)和流感嗜血菌(Haemophilus influenzae)。适当的微生物包括酿酒酵母(Saccharomyces cerevisiae)和毕赤酵母(Pichia pastoris)。适当的动物宿主细胞系包括CHO(中国仓鼠卵巢细胞系)和NS0细胞。According to the present disclosure, the term "host cell" refers to a cell into which an expression vector has been introduced. Host cells can include bacterial, microbial, plant or animal cells. Bacteria that are readily transformed include members of the enterobacteriaceae such as strains of Escherichia coli or Salmonella; the Bacillaceae such as Bacillus subtilis; Pneumococcus; Streptococcus and Haemophilus influenzae. Suitable microorganisms include Saccharomyces cerevisiae and Pichia pastoris. Suitable animal host cell lines include CHO (Chinese Hamster Ovary cell line) and NSO cells.
根据本公开,氨基酸“添加”指在氨基酸序列的C端或N端添加氨基酸。根据本公开,氨基酸“缺失”指可以从氨基酸序列中删除1、2或3个以上氨基酸。根据本公开,氨基酸“插入”指在氨基酸序列中的适当位置插入氨基酸残基,插入的氨基酸残基也可以全部或部分彼此相邻,或插入的氨基酸之间都不彼此相邻。According to the present disclosure, amino acid "addition" refers to the addition of amino acids at the C-terminus or N-terminus of an amino acid sequence. According to the present disclosure, an amino acid "deletion" means that 1, 2 or more than 3 amino acids can be deleted from the amino acid sequence. According to the present disclosure, amino acid "insertion" refers to inserting amino acid residues at appropriate positions in the amino acid sequence, and the inserted amino acid residues may be all or partly adjacent to each other, or the inserted amino acids may not be adjacent to each other.
根据本公开,氨基酸“取代”指在氨基酸序列中的某个位置的某个氨基酸残基被其他氨基酸残基替代;其中,“取代”可以是保守氨基酸取代。According to the present disclosure, amino acid "substitution" refers to the replacement of a certain amino acid residue at a certain position in the amino acid sequence by other amino acid residues; wherein, the "substitution" may be a conservative amino acid substitution.
根据本公开,“保守修饰”、“保守取代”或“保守置换”是指具有类似特征(例如电荷、侧链大小、疏水性/亲水性、主链构象和刚性等)的其它氨基酸置换蛋白中的氨基酸,使得可频繁进行改变而不改变蛋白的生物学活性。本领域技术人员知晓,一般而言,多肽的非必需区域中的单个氨基酸置换基本上不改变生物学活性(参见例如Watson等(1987)Molecular Biology of the Gene,The Benjamin/Cummings Pub.Co.,第224页,(第4版))。另外,结构或功能类似的氨基酸的置换不大可能破坏生物学活性。示例性保守取代于以下“示例性氨基酸保守取代”中陈述。According to the present disclosure, "conservative modification", "conservative substitution" or "conservative substitution" refers to other amino acid replacement proteins with similar characteristics (such as charge, side chain size, hydrophobicity/hydrophilicity, backbone conformation and rigidity, etc.) Amino acids in , so that frequent changes can be made without altering the biological activity of the protein. Those skilled in the art are aware that, in general, single amino acid substitutions in non-essential regions of a polypeptide do not substantially alter biological activity (see, e.g., Watson et al. (1987) Molecular Biology of the Gene, The Benjamin/Cummings Pub. Co., p. 224, (4th edition)). In addition, substitution of structurally or functionally similar amino acids is unlikely to destroy biological activity. Exemplary conservative substitutions are set forth below under "Exemplary Amino Acid Conservative Substitutions".
示例性氨基酸保守取代Exemplary Amino Acid Conservative Substitutions
原始残基original residue 保守取代conservative substitution
Ala(A)Ala(A) Gly;SerGly; Ser
Arg(R)Arg(R) Lys;HisLys; His
Asn(N)Asn(N) Gln;His;AspGln; His; Asp
Asp(D)Asp(D) Glu;AsnGlu;Asn
Cys(C)Cys(C) Ser;Ala;ValSer; Ala; Val
Gln(Q)Gln(Q) Asn;GluAsn; Glu
Glu(E)Glu(E) Asp;GlnAsp; Gln
Gly(G)Gly(G) AlaAla
His(H)His(H) Asn;GlnAsn; Gln
Ile(I)Ile (I) Leu;ValLeu; Val
Leu(L)Leu(L) Ile;ValIle;
Lys(K)Lys(K) Arg;HisArg; His
Met(M)Met(M) Leu;Ile;TyrLeu; Ile; Tyr
Phe(F)Phe(F) Tyr;Met;LeuTyr; Met; Leu
Pro(P)Pro(P) AlaAla
Ser(S)Ser(S) ThrThr
Thr(T)Thr(T) SerSer
Trp(W)Trp(W) Tyr;PheTyr; Phe
Tyr(Y)Tyr(Y) Trp;PheTrp; Phe
Val(V)Val(V) Ile;LeuIle; Leu
根据本公开,“中等至非常高等严格条件”包括“中等严格条件”,“中-高严格条件”,“高严格条件”或“非常高严格条件”,其描述了核酸杂交和洗涤的条件。进行杂交反应的指导参见Current Protocols in Molecular Biology,John Wiley&Sons,N.Y.(1989),6.3.1-6.3.6,其通过引用并入本文。在该文献中描述了含水的和非含水的方法,且可以使用任一种。例如,具体的杂交条件如下:(1)低严格性杂交条件在6×氯化钠/柠檬酸钠(SSC)中,在约45℃,然后在至少50℃,在0.2×SSC,0.1%SDS中洗涤2次(对于低严格性条件,可以将洗涤温度升高到55℃);(2)中等严格性杂交条件在6×SSC,在约45℃,然后在60℃,在0.2×SSC,0.1%SDS中洗涤1次或多次;(3)高严格性杂交条件在6×SSC,在约45℃,然后在65℃,在0.2×SSC,0.1%SDS中洗涤1次或多次且优选;(4)非常高的严格性杂交条件是0.5M磷酸钠,7%SDS,在65℃,然后在65℃,在0.2×SSC,1%SDS中洗涤1次或多次。According to the present disclosure, "moderate to very high stringency conditions" include "moderate stringency conditions", "medium-high stringency conditions", "high stringency conditions" or "very high stringency conditions", which describe the conditions for nucleic acid hybridization and washing. Guidance on performing hybridization reactions is found in Current Protocols in Molecular Biology, John Wiley & Sons, N.Y. (1989), 6.3.1-6.3.6, which is incorporated herein by reference. Aqueous and non-aqueous methods are described in this document and either can be used. For example, specific hybridization conditions are as follows: (1) low stringency hybridization conditions in 6× sodium chloride/sodium citrate (SSC), at about 45° C., then at least 50° C., in 0.2× SSC, 0.1% SDS Medium wash 2 times (for low stringency conditions, the washing temperature can be increased to 55°C); (2) medium stringency hybridization conditions at 6×SSC, at about 45°C, then at 60°C, at 0.2×SSC, Wash 1 time or multiple times in 0.1% SDS; (3) high stringency hybridization conditions are at 6×SSC, at about 45° C., then at 65° C., wash 1 time or more times in 0.2×SSC, 0.1% SDS and Preferably; (4) very high stringency hybridization conditions are 0.5M sodium phosphate, 7% SDS, at 65°C, and then at 65°C, wash once or more in 0.2×SSC, 1%SDS.
根据本公开,“外源性”指根据情况在生物、细胞或人体外产生的物质。“内源性”指根据情况在细胞、生物或人体内产生的物质。According to the present disclosure, "exogenous" refers to a substance produced outside an organism, a cell, or a human body as the case may be. "Endogenous" refers to a substance produced in a cell, organism, or human body, as the case may be.
根据本公开,“同源性”或“同一性”是指两个多核苷酸序列之间或两个多肽之间的序列相似性。当两个比较序列中的位置均被相同碱基或氨基酸单体亚基占据时,例如如果两个DNA分子的每一个位置 都被腺嘌呤占据时,那么所述分子在该位置是同源的。两个序列之间的同源性百分率是两个序列共有的匹配或同源位置数除以比较的位置数×100的函数。例如,在序列最佳比对时,如果两个序列中的10个位置有6个匹配或同源,那么两个序列为60%同源;如果两个序列中的100个位置有95个匹配或同源,那么两个序列为95%同源。通常,当比对两个序列时进行比较以给出最大百分比同源性。例如,可以通过BLAST算法执行比较,其中选择算法的参数以在各个参考序列的整个长度上给出各个序列之间的最大匹配。以下参考文献涉及经常用于序列分析的BLAST算法:BLAST算法(BLAST ALGORITHMS):Altschul,S.F.等人,(1990)J.Mol.Biol.215:403-410;Gish,W.等人,(1993)Nature Genet.3:266-272;Madden,T.L.等人,(1996)Meth.Enzymol.266:131-141;Altschul,S.F.等人,(1997)Nucleic Acids Res.25:3389-3402;Zhang,J.等人,(1997)Genome Res.7:649-656。其他如NCBI BLAST提供的常规BLAST算法也为本领域技术人员所熟知。According to the present disclosure, "homology" or "identity" refers to sequence similarity between two polynucleotide sequences or between two polypeptides. When a position in both compared sequences is occupied by the same base or subunit of an amino acid monomer, for example if every position in two DNA molecules is occupied by an adenine, then the molecules are homologous at that position . The percent homology between two sequences is a function of the number of matching or homologous positions shared by the two sequences divided by the number of compared positions x 100. For example, when the sequences are optimally aligned, if 6 of the 10 positions in the two sequences match or are homologous, then the two sequences are 60% homologous; if 95 of the 100 positions in the two sequences match or homology, then the two sequences are 95% homologous. Generally, when aligning two sequences, comparisons are made to give the greatest percent homology. For example, comparison can be performed by the BLAST algorithm, the parameters of which are chosen to give the largest match between the respective sequences over the entire length of the respective reference sequences. The following references relate to the BLAST algorithm that is often used in sequence analysis: BLAST ALGORITHMS: Altschul, S.F. et al., (1990) J.Mol.Biol.215:403-410; Gish, W. et al., (1993 ) Nature Genet.3:266-272; Madden, T.L. et al., (1996) Meth.Enzymol.266:131-141; Altschul, S.F. et al., (1997) Nucleic Acids Res.25:3389-3402; Zhang, J. et al., (1997) Genome Res. 7:649-656. Other conventional BLAST algorithms, such as those provided by NCBI BLAST, are also well known to those skilled in the art.
根据本公开,术语“密码子优化”是指编码多肽的核苷酸序列已被配置为包含宿主细胞或生物体优选的密码子,以改善宿主细胞或生物体中的基因表达并提高翻译效率。According to the present disclosure, the term "codon optimized" means that the nucleotide sequence encoding a polypeptide has been configured to contain codons preferred by the host cell or organism in order to improve gene expression and increase translation efficiency in the host cell or organism.
根据本公开,术语“标签”是指这样的短肽,其与目的蛋白(例如本公开的改造型GPR75)融合或连接,并由此促进重组蛋白的可溶性表达、检测和/或纯化。标签可融合或连接至目的蛋白的N端和/或C端(任选地通过接头或蛋白酶切割位点)。此类标签是本领域技术人员熟知的,并且已在现有技术文献中进行了详细描述。例如,此类标签包括但不限于,组氨酸标签(Sockolosky,J.T.and F.C.Szoka(2013).Protein Expr Purif 87(2):129-135)、谷胱甘肽转移酶(GST)标签(Hayashi,K.and C.Kojima(2008).Protein Expr Purif 62(1):120-127)、麦芽糖结合蛋白(MBP)标签(Bataille,L.,W.Dieryck,A.Hocquellet,C.Cabanne,K.Bathany,S.Lecommandoux,B.Garbay and E.Garanger,Protein Expression and Purification Volume 110,June 2015,Pages 165-171)、硫氧还蛋白(Trx)标签(Tomala,M.,A.Lavrentieva,P.Moretti,U.Rinas,C.Kasper,F.Stahl,A.Schambach,E.Warlich,U.Martin,T.Cantz and T.Scheper,2010,Protein Expr Purif 73(1):51-57)、NusA标签(Li,K.,T.Jiang,B.Yu,L.Wang,C.Gao,C.Ma,P.Xu and Y.Ma(2013).Sci Rep 3:2347)、二硫键异构酶DsbA标签(Zhang,Y.,D.R.Olsen,K.B.Nguyen,P.S.Olson,E.T.Rhodes and D.Mascarenhas(1998).Protein Expr Purif 12(2):159-165)、DsbC标签(Kurokawa,Y.,H.Yanagi and T.Yura(2001).J Biol Chem 276(17):14393-14399)、SUMO标签(Marblestone,J.G.,S.C.Edavettal,Y.Lim,P.Lim,X.Zuo and T.R.Butt(2006).Protein Sci15(1):182-189)、msyB标签(Zou,Z.,L.Cao,P.Zhou,Y.Su,Y.Sun and W.Li(2008).J Biotechnol 135(4):333-339)、TF标签、引发因子标签(Kim,E.K.,J.C.Moon,J.M.Lee,M.S.Jeong,C.Oh,S.M.Ahn,Y.J.Yoo and H.H.Jang(2012).Protein Expr Purif 86(1):53-57)、泛素标签(Sabin,E.A.,Lee-Ng,Chun Ting,Shuster,Jeffrey R.,Barr,Philip J.(1989).Nature Biotechnology 7(7):705-709)、Myc标签、Flag标签、荧光蛋白(例如GFP)标签(Pedelacq,J.D.,S.Cabantous,T.Tran,T.C.Terwilliger and G.S.Waldo(2006).Nat Biotechnol 24(1):79-88)、生物素标签、以及亲和素标签。According to the present disclosure, the term "tag" refers to a short peptide that is fused or linked to a protein of interest (such as the modified GPR75 of the present disclosure) and thereby facilitates soluble expression, detection and/or purification of the recombinant protein. Tags can be fused or linked to the N- and/or C-terminus of the protein of interest (optionally via a linker or protease cleavage site). Such tags are well known to those skilled in the art and have been described in detail in the prior art literature. For example, such tags include, but are not limited to, histidine tags (Sockolosky, J.T. and F.C. Szoka (2013). Protein Expr Purif 87(2):129-135), glutathione transferase (GST) tags (Hayashi , K.and C.Kojima(2008).Protein Expr Purif 62(1):120-127), maltose binding protein (MBP) tag (Bataille, L., W.Dieryck, A.Hocquellet, C.Cabanne, K .Bathany, S.Lecommandoux, B.Garbay and E.Garanger, Protein Expression and Purification Volume 110, June 2015, Pages 165-171), Thioredoxin (Trx) tag (Tomala, M., A.Lavrentieva, P .Moretti, U.Rinas, C.Kasper, F.Stahl, A.Schambach, E.Warlich, U.Martin, T.Cantz and T.Scheper, 2010, Protein Expr Purif 73(1):51-57), NusA tag (Li, K., T.Jiang, B.Yu, L.Wang, C.Gao, C.Ma, P.Xu and Y.Ma(2013).Sci Rep 3:2347), disulfide bond Constructase DsbA tag (Zhang, Y., D.R.Olsen, K.B.Nguyen, P.S.Olson, E.T.Rhodes and D.Mascarenhas (1998). Protein Expr Purif 12 (2): 159-165), DsbC tag (Kurokawa, Y., H.Yanagi and T.Yura(2001).J Biol Chem 276(17):14393-14399), SUMO tag (Marblestone, J.G., S.C.Edavettal, Y.Lim, P.Lim, X.Zuo and T.R.Butt(2006 ). Protein Sci15 (1): 182-189), msyB tag (Zou, Z., L. Cao, P. Zhou, Y. Su, Y. Sun and W. Li (2008). J Biotechnol 135 (4) :333-339), TF tag, elicitor tag (Kim, E.K., J.C.Moon, J.M.Lee, M.S.Jeong, C.Oh, S.M.Ahn, Y.J.Yoo and H.H.Jang(2012). Protein Expr Purif 86(1): 53-57), ubiquitin tag (Sabin, E.A., Lee-Ng, Chun Ting, Shuster, Jeffrey R., Barr, Philip J. (1989). Nature Biotechnology 7(7):705-709), Myc tag, Flag tags, fluorescent protein (such as GFP) tags (Pedelacq, J.D., S. Cabantous, T. Tran, T. C. Terwilliger and G. S. Waldo (2006). Nat Biotechnol 24 (1): 79-88), biotin tags, and affinity and vegetarian labels.
根据本公开,术语“信号肽”、“信号序列”或“信号肽序列”是指这样的短肽,当其与目的蛋白(例如本公开的改造型GPR75)融合时,其能够促进细胞所表达的目的蛋白分泌到细胞膜上或者细胞外。信号肽通常位于目的蛋白的N端,并且各种信号肽是本领域技术人员已知的,例如但不限于红细胞凝集素信号序列、人胰岛素信号序列、人白介素2信号序列、白蛋白信号序列等。According to the present disclosure, the terms "signal peptide", "signal sequence" or "signal peptide sequence" refer to short peptides that, when fused to a protein of interest (such as the engineered GPR75 of the present disclosure), are capable of promoting the expression of The target protein is secreted to the cell membrane or extracellularly. The signal peptide is usually located at the N-terminal of the protein of interest, and various signal peptides are known to those skilled in the art, such as but not limited to hemagglutinin signal sequence, human insulin signal sequence, human interleukin 2 signal sequence, albumin signal sequence, etc. .
根据本公开,术语“蛋白酶切割位点”是指,能够被蛋白酶特异性识别并切割的位点。各种特异性蛋白酶及其识别位点是本领域技术人员所熟知的,并见于许多现有技术文献中。本领域技术人员可根据实际情况,在融合蛋白中使用合适的蛋白酶切割位点,并用相应的蛋白酶进行切割。蛋白酶切割位点的使用可以是有利的,例如,其可用于从融合蛋白中切除信号肽和/或标签,从而获得具有目的活性的成熟蛋白。According to the present disclosure, the term "protease cleavage site" refers to a site that can be specifically recognized and cleaved by a protease. Various specific proteases and their recognition sites are well known to those skilled in the art and can be found in many prior art documents. Those skilled in the art can use a suitable protease cleavage site in the fusion protein according to the actual situation, and use the corresponding protease to perform cleavage. The use of a protease cleavage site may be advantageous, for example, to cleave a signal peptide and/or tag from a fusion protein, thereby obtaining a mature protein with the activity of interest.
根据本公开,术语“肽接头”是指用于连接两个分子(例如蛋白)的短肽。通常,通过将编码该短肽的多核苷酸序列引入(例如,通过PCR扩增或连接酶)分别编码所要连接的两种目的蛋白的两个DNA片段之间,并进行蛋白质表达来获得融合蛋白,例如目的蛋白1-肽接头-目的蛋白2。According to the present disclosure, the term "peptide linker" refers to a short peptide used to link two molecules such as proteins. Usually, the fusion protein is obtained by introducing (for example, by PCR amplification or ligase) the polynucleotide sequence encoding the short peptide between two DNA fragments respectively encoding the two target proteins to be linked, and performing protein expression , such as target protein 1-peptide linker-target protein 2.
根据本公开,术语“载体”是指,可将多核苷酸插入其中的一种核酸运载工具。当载体能使插入的多核苷酸所编码的蛋白获得表达时,载体称为表达载体。载体可以通过转化,转导或者转染导入宿主细胞,使其携带的遗传物质元件在宿主细胞中获得表达。载体是本领域技术人员公知的,包括但不限于:质粒、噬菌体、柯斯质粒等等。According to the present disclosure, the term "vector" refers to a nucleic acid delivery vehicle into which a polynucleotide can be inserted. When the vector is capable of expressing the protein encoded by the inserted polynucleotide, the vector is called an expression vector. A vector can be introduced into a host cell by transformation, transduction or transfection, so that the genetic material elements it carries can be expressed in the host cell. Vectors are well known to those skilled in the art, including but not limited to: plasmids, phages, cosmids and the like.
根据本公开,术语“细胞”、“细胞系”和“细胞培养物”可互换使用,并且所有这类名称都包括后代。因此,术语“转化体”和“转化细胞”包括原代受试细胞和由其衍生的培养物,而不考虑转移数目。还应当理解的是,由于故意或非有意的突变,所有后代在DNA含量方面不可能精确相同。包括具有与最初转化细胞中筛选的相同的功能或生物学活性的突变后代。在意指不同名称的情况下,其由上下文清楚可见。According to the present disclosure, the terms "cell", "cell line" and "cell culture" are used interchangeably and all such designations include progeny. Thus, the terms "transformant" and "transformed cell" include the primary subject cell and cultures derived therefrom, regardless of the number of transfers. It should also be understood that all progeny may not be precisely identical in DNA content due to deliberate or unintentional mutations. Mutant progeny having the same function or biological activity as screened for in the originally transformed cells are included. Where a different name is intended, it is clear from the context.
以下结合附图,通过实施例进一步说明本公开,但不作为对本公开的限制。以下提供了本公开实施方案中所使用的具体材料及其来源。但是,应当理解的是,这些仅仅是示例性的,并不意图限制本公开,与如下试剂和仪器的类型、型号、品质、性质或功能相同或相似的材料均可以用于实施本公开。下述实施例中所使用的实验方法如无特殊说明,均为常规方法。下述实施例中所用的材料、试剂等,如无特殊说明,均可从商业途径得到。The present disclosure is further described through embodiments below in conjunction with the accompanying drawings, but it is not intended to limit the present disclosure. Specific materials and their sources used in embodiments of the present disclosure are provided below. However, it should be understood that these are only exemplary and not intended to limit the present disclosure, and materials with the same or similar type, model, quality, property or function as the following reagents and instruments can be used to implement the present disclosure. The experimental methods used in the following examples are conventional methods unless otherwise specified. The materials and reagents used in the following examples can be obtained from commercial sources unless otherwise specified.
实施例:改造型GPR75的制备Embodiment: the preparation of transformation type GPR75
一、序列优化1. Sequence optimization
本实施例中,所采用的预测蛋白结构软件为AlphaFold本地版(v2.1.0)和RoseTTAFold。In this example, the protein structure prediction software used is AlphaFold local version (v2.1.0) and RoseTTAFold.
1.1、野生型GPR75的截断和改造1.1. Truncation and transformation of wild-type GPR75
针对野生型GPR75具有较长的无规则序列区域,不适合蛋白质结构解析。本实施例中,根据AlphaFold2和RoseTTAFold两个模型对于GPR75二级结构预测情况(图1A),跨膜区预测结果非常相似。无规则序列区域可信度非常低,因此我们对GPR75受体原有的无规则序列区域进行截断,留下受体关键的7次跨膜区域(图1B)。野生型及其被截断序列如下所示(具体参见SEQ ID NO:1),在野生型GPR75的第五跨膜螺旋及第六跨膜螺旋之间截断,并删除(缺失)野生型GPR75N端和C端的无规则序列以及野生型GPR75第五跨膜螺旋及第六跨膜螺旋之间无规则序列。Wild-type GPR75 has a long random sequence region, which is not suitable for protein structure analysis. In this example, according to AlphaFold2 and RoseTTAFold two models for the prediction of GPR75 secondary structure ( FIG. 1A ), the prediction results of the transmembrane region are very similar. The reliability of the random sequence region is very low, so we truncated the original random sequence region of the GPR75 receptor, leaving the key seven transmembrane regions of the receptor (Fig. 1B). The wild-type and its truncated sequences are shown below (see SEQ ID NO:1 for details), truncated between the fifth transmembrane helix and the sixth transmembrane helix of wild-type GPR75, and delete (delete) the wild-type GPR75 N-terminal and The random sequence at the C-terminal and the random sequence between the fifth transmembrane helix and the sixth transmembrane helix of wild-type GPR75.
野生型GPR75(GPR75-WT)氨基酸序列(SEQ ID NO:1):Wild-type GPR75 (GPR75-WT) amino acid sequence (SEQ ID NO: 1):
Figure PCTCN2022117816-appb-000001
Figure PCTCN2022117816-appb-000001
Figure PCTCN2022117816-appb-000002
Figure PCTCN2022117816-appb-000002
备注:上述野生型GPR75氨基酸序列中,单下划线为在改造型GPR75中保留的氨基酸序列,其分别对应野生型GPR75的从N端数起第一至第五跨膜螺旋,以及野生型GPR75的从N端数起第六至第七跨膜螺旋;斜体部分为在截断型GPR75中保留,在改造型GPR75中被删除的序列。Remarks: In the amino acid sequence of wild-type GPR75 above, the single underline is the amino acid sequence retained in the modified GPR75, which correspond to the first to fifth transmembrane helices from the N-terminus of wild-type GPR75, and the N-terminus of wild-type GPR75. The sixth to seventh transmembrane helices from the end; the parts in italics are the sequences retained in the truncated GPR75 and deleted in the modified GPR75.
1.2、BRIL融合蛋白对截断GPR75的连接1.2. Linkage of BRIL fusion protein to truncated GPR75
考虑利用经典的源自细菌可溶性细胞色素b562的BRIL融合蛋白,对上述在第五和第六跨膜螺旋截断处进行融合连接(图2),其具有4个跨膜螺旋,已在多个GPCR晶体(如PDB ID:7F83、7VOD、6LPJ、6KO5、6OS0等)及电镜结构(如PDB ID:7S8O、6WW2、6USF等)解析中被应用。使用该BRIL融合蛋白能够增加改造型GPR75的胞外区的大小,在电镜结构解析中,可以作为一个标志物。Consider the use of the classic BRIL fusion protein derived from bacterial soluble cytochrome b562 to perform fusion junctions at the fifth and sixth transmembrane helices (Figure 2), which have four transmembrane helices and have been used in multiple GPCR Crystal (such as PDB ID: 7F83, 7VOD, 6LPJ, 6KO5, 6OS0, etc.) and electron microscope structure (such as PDB ID: 7S8O, 6WW2, 6USF, etc.) are used in the analysis. Using the BRIL fusion protein can increase the size of the extracellular region of the remodeled GPR75, which can be used as a marker in electron microscope structure analysis.
BRIL融合蛋白的融合位点,需要进行优化。本实施例对BRIL融合蛋白的融合位点进行了16个位点的筛选(图3),根据AlphaFold2蛋白质结构预测,本实施例选择了能够与第五和第六跨膜螺旋形成稳定螺旋的改造序列,将第五和第六跨膜螺旋融合连接。The fusion site of BRIL fusion protein needs to be optimized. In this example, 16 sites were screened for the fusion site of the BRIL fusion protein (Figure 3). According to the prediction of the AlphaFold2 protein structure, this example selected the transformation that can form a stable helix with the fifth and sixth transmembrane helices sequence, which fuses the fifth and sixth transmembrane helices.
本实施例中的改造型GPR75中采用的BRIL融合蛋白序列(SEQ ID NO:2):The BRIL fusion protein sequence (SEQ ID NO: 2) adopted in the transformed GPR75 in the present embodiment:
Figure PCTCN2022117816-appb-000003
Figure PCTCN2022117816-appb-000003
为了进一步优化融合位点的位置,我们分布对第五和第六跨膜螺与BRIL连接区域进行单氨基酸浮动,并利用AlphaFold2预测融合蛋白的二级结构。根据AlphaFold2的预测效果图(图4),我们对16个融合位点的选择进行了效果比较。通过BRIL融合蛋白序列对上述在第五和第六跨膜螺旋截断处进行融合连接所获得的序列为(SEQ ID NO:3):In order to further optimize the location of the fusion site, we distributed single amino acid floats to the fifth and sixth transmembrane helix-BRIL junction regions, and used AlphaFold2 to predict the secondary structure of the fusion protein. According to the prediction effect map of AlphaFold2 (Figure 4), we compared the effects of the selection of 16 fusion sites. The sequence obtained by fusion connection of the fifth and sixth transmembrane helix truncations above through the BRIL fusion protein sequence is (SEQ ID NO: 3):
Figure PCTCN2022117816-appb-000004
Figure PCTCN2022117816-appb-000004
1.3、N端融合β2肾上腺素受体序列1.3, N-terminal fusion β2 adrenoceptor sequence
在本实施例中,为提高受体的稳定性和表达量,在N端融合24个氨基酸的人源β2肾上腺素受体的序列(UNIPORT:P07550)。In this example, in order to improve the stability and expression of the receptor, a sequence of 24 amino acids of human β2 adrenoceptor (UNIPORT: P07550) was fused to the N-terminus.
本实施例中的改造型GPR75中采用的β2肾上腺素受体的序列为(SEQ ID NO:4):The sequence of the β2 adrenergic receptor adopted in the modified GPR75 in this embodiment is (SEQ ID NO:4):
Figure PCTCN2022117816-appb-000005
Figure PCTCN2022117816-appb-000005
在本实施例中,增加了β2肾上腺素受体序列的改造型GPR75的序列如下(SEQ ID NO:5)In the present embodiment, the sequence of the transformed GPR75 with the β2 adrenoreceptor sequence added is as follows (SEQ ID NO: 5)
Figure PCTCN2022117816-appb-000006
Figure PCTCN2022117816-appb-000006
1.4、信号肽、酶切位点以及标签序列的添加1.4. Addition of signal peptide, enzyme cleavage site and tag sequence
本实施例中,改造型GPR75的N端和C端,分别进行了Flag标签序列,以及Strep标签序列和6×His标签序列的设计,方便对异源表达的改造型GPR75进行纯化。最后,本实施例对蛋白的序列进行多酶切位点(3C/TEV)设计及Sortase A融合序列设计,可以方便后期根据需要对纯化后的蛋白进行不同方案的反向纯化、基质固定、以及位点特异性的荧光标记等,改造后的序列将方便地应用于核酸编码的小分子药物库、药物结合实验等。In this example, the N-terminal and C-terminal of the modified GPR75 were designed with Flag tag sequence, Strep tag sequence and 6×His tag sequence, so as to facilitate the purification of the heterologously expressed modified GPR75. Finally, in this example, the sequence of the protein is designed with multiple restriction sites (3C/TEV) and the fusion sequence of Sortase A, which can facilitate the reverse purification of the purified protein in different schemes, matrix immobilization, and Site-specific fluorescent labels, etc., the modified sequence will be conveniently applied to nucleic acid-encoded small molecule drug libraries, drug binding experiments, etc.
具体地,在本实施例中的改造型GPR75从N端至C端依次为:Specifically, the modified GPR75 in this example is as follows from the N-terminal to the C-terminal:
红细胞凝集素信号序列(MKTIIALSYIFCLVFA;SEQ ID NO:6);Hemagglutinin signal sequence (MKTIIALSYIFCLVFA; SEQ ID NO:6);
Flag标签序列(DYKDDDDA;SEQ ID NO:7);Flag tag sequence (DYKDDDDA; SEQ ID NO:7);
β2肾上腺素受体序列(MGQPGNGSAFLLAPNRSHAPDHDV;SEQ ID NO:4);β2 adrenergic receptor sequence (MGQPGNGSAFLLAPNRSHAPDHDV; SEQ ID NO: 4);
TEV蛋白酶切割位点(ENLYFQG;SEQ ID NO:8);TEV protease cleavage site (ENLYFQG; SEQ ID NO:8);
通过BRIL融合蛋白序列连接的截断的GPR75所获得的序列(SEQ ID NO:3);Sequence obtained by truncated GPR75 linked by BRIL fusion protein sequence (SEQ ID NO:3);
Sortase A融合序列(LPETG;SEQ ID NO:9);其为一种“类USB接口”,Sortase A酶的连接位点。Sortase A fusion sequence (LPETG; SEQ ID NO:9); it is a "USB-like interface", the attachment site of Sortase A enzyme.
Strep标签序列(SAWSHPQFEK;SEQ ID NO:10);Strep tag sequence (SAWSHPQFEK; SEQ ID NO: 10);
HRV 3C蛋白酶切割位点(LEVLFQGP;SEQ ID NO:11);HRV 3C protease cleavage site (LEVLFQGP; SEQ ID NO: 11);
6×His标签序列(HHHHHH;SEQ ID NO:12)。6×His tag sequence (HHHHHH; SEQ ID NO: 12).
HRV 3C蛋白酶切割位点与6×His标签序列间通过GS连接。The HRV 3C protease cleavage site and the 6×His tag sequence are connected by GS.
改造型GPR75(GPR75-M)的完整氨基酸序列为(SEQ ID NO:13):The complete amino acid sequence of the modified GPR75 (GPR75-M) is (SEQ ID NO: 13):
Figure PCTCN2022117816-appb-000007
Figure PCTCN2022117816-appb-000007
备注:SEQ ID NO:3所示序列C端末尾与Sortase A融合序列的N端共用氨基酸L。Remarks: The end of the C-terminal of the sequence shown in SEQ ID NO: 3 shares the amino acid L with the N-terminal of the Sortase A fusion sequence.
GPR75-M密码子优化(基于sf9昆虫细胞)后的核酸序列(SEQ ID NO:14):Nucleic acid sequence (SEQ ID NO: 14) after GPR75-M codon optimization (based on sf9 insect cells):
Figure PCTCN2022117816-appb-000008
Figure PCTCN2022117816-appb-000008
1.5、基因合成及质粒构建1.5. Gene synthesis and plasmid construction
我们将序列优化后的基因,包括野生型GPR75、截断型GPR75、改造型GPR75基因送由北京祥鸿生物科技有限公司进行基因合成,携带NotI和HindIII酶切位点,连接重组至pFastbac-1质粒。We sent the sequence-optimized genes, including wild-type GPR75, truncated GPR75, and modified GPR75 genes, to Beijing Xianghong Biotechnology Co., Ltd. for gene synthesis, carrying NotI and HindIII restriction sites, ligated and recombined into the pFastbac-1 plasmid .
其中,截断型GPR75的氨基酸序列(SEQ ID NO:15):Wherein, the amino acid sequence (SEQ ID NO: 15) of truncated GPR75:
Figure PCTCN2022117816-appb-000009
Figure PCTCN2022117816-appb-000009
截断型GPR75中,无BRIL融合蛋白序列,且未缺失野生型GPR75中N端的无规则序列,其他信号 肽、酶切位点、标签序列与改造型GPR75相同。In the truncated GPR75, there is no BRIL fusion protein sequence, and the random sequence at the N-terminus of the wild-type GPR75 is not deleted, and other signal peptides, enzyme cleavage sites, and tag sequences are the same as those of the modified GPR75.
二、重组杆状病毒的制备2. Preparation of recombinant baculovirus
2.1、通过热激转化,将含有目的基因的重组pFastbac质粒导入到大肠杆菌DH10Bac感受态细胞(博迈德生物)中,在含有50μg/mL卡那霉素(BioBomei)、7μg/mL庆大霉素(BioBomei)、10μg/mL四环霉素(BioBomei)、200μg/mL X-gal(inalco)、40μg/mL IPTG(inalco)的LB固体培养基中,于37℃培养48小时。挑选均匀的白斑至3mL含有三种抗生素(50μg/mL卡那霉素、7μg/mL庆大霉素、10μg/mL四环霉素)的LB液体培养基中,37℃,200rpm条件下培养过夜,待菌液OD 600约为0.6时,抽提重组杆状病毒质粒。 2.1. Through heat-shock transformation, the recombinant pFastbac plasmid containing the gene of interest was introduced into Escherichia coli DH10Bac competent cells (Bomei De Biology), in the presence of 50 μg/mL kanamycin (BioBomei), 7 μg/mL gentamicin In LB solid medium of 10 μg/mL tetracycline (BioBomei), 200 μg/mL X-gal (inalco), 40 μg/mL IPTG (inalco), cultured at 37° C. for 48 hours. Pick uniform leukoplakia into 3 mL LB liquid medium containing three kinds of antibiotics (50 μg/mL kanamycin, 7 μg/mL gentamicin, 10 μg/mL tetracycline), and culture overnight at 37°C and 200 rpm , when the OD 600 of the bacterial solution was about 0.6, the recombinant bacmid was extracted.
2.2、取1mL insect Medium(Graces)加入15μL转染试剂(FuGENE)、5μg重组杆状病毒质粒室温下孵育15分钟,用此混合物溶液重悬10-12×10 6sf9昆虫细胞(该昆虫细胞由细胞培养液在室温,500rpm的条件下离心10分钟获得),于27℃,200rpm的条件下培养4个小时,之后加入5mL ESF921昆虫细胞培养基(Expression Systems),于27℃,200rpm的条件下继续培养48小时。将培养了48小时的sf9细胞转移100mL锥形瓶中,27℃,110rpm条件下培养至细胞密度达2-4×10 6/mL时,室温下2500rpm离心10分钟上清即为P1代重组杆状病毒。 2.2. Take 1 mL of insect Medium (Graces), add 15 μL of transfection reagent (FuGENE), and incubate at room temperature for 15 minutes with 5 μg of recombinant baculovirus plasmid, and use this mixture to resuspend 10-12×10 6 sf9 insect cells (the insect cells produced by The cell culture solution was centrifuged at room temperature and 500rpm for 10 minutes), cultivated at 27°C and 200rpm for 4 hours, and then added 5mL of ESF921 insect cell culture medium (Expression Systems), at 27°C and 200rpm Continue culturing for 48 hours. Transfer the sf9 cells that have been cultured for 48 hours to a 100mL Erlenmeyer flask, culture at 27°C and 110rpm until the cell density reaches 2-4×10 6 /mL, centrifuge at 2500rpm for 10 minutes at room temperature, and the supernatant is the P1 recombinant rod virus.
2.3、取P1代重组杆状病毒按照1:10000的比例转染100mL细胞密度为1.5×10 6/mL sf9昆虫细胞,27℃,110rpm的条件下进行培养,待细胞密度达6×10 6/mL左右,细胞体积膨大且较为均匀时,室温下,2500rpm离心10分钟,上清液用0.22μm针头滤器过滤后即为P2代重组杆状病毒。 2.3. Take the recombinant baculovirus of the P1 generation and transfect 100 mL of sf9 insect cells with a cell density of 1.5×10 6 /mL at a ratio of 1:10,000. Culture at 27°C and 110 rpm until the cell density reaches 6×10 6 /mL About mL, when the cell volume is enlarged and relatively uniform, centrifuge at 2500 rpm for 10 minutes at room temperature, and filter the supernatant with a 0.22 μm syringe filter to obtain the recombinant baculovirus of the P2 generation.
三、蛋白纯化小试3. Protein purification small test
取P2代重组杆状病毒按照1:50的比例转染20mL密度为4×10 6/mL sf9昆虫细胞,27℃,110rpm条件下培养细胞48小时。培养结束后,取样进行Western blot检测以确定目的蛋白的表达。 The P2-generation recombinant baculovirus was used to transfect 20 mL of sf9 insect cells at a density of 4×10 6 /mL at a ratio of 1:50, and the cells were cultured at 27°C and 110 rpm for 48 hours. After culturing, samples were taken for Western blot detection to determine the expression of the target protein.
我们对野生型GPR75和改造型GPR75的进行Western blot平行实验。实验结果表明,野生型GPR75无明显表达条带,而改造型GPR75观测到了有目标条带表达(图5)。说明改造后GPR75表达量有提升。由于野生型GPR75检测无表达,后续进一步对截断型GPR75和改造型GPR75进行大量表达纯化对比。We performed Western blot parallel experiments on wild-type GPR75 and modified GPR75. The experimental results showed that the wild-type GPR75 had no obvious expression bands, but the expression of target bands was observed in the modified GPR75 ( FIG. 5 ). It indicated that the expression level of GPR75 was improved after transformation. Since the wild-type GPR75 had no expression detected, a large amount of expression and purification of the truncated GPR75 and the modified GPR75 were further compared.
四、蛋白大量表达与纯化4. Mass expression and purification of protein
取P2代重组杆状病毒按照1:50的比例转染1L密度为4×10 6/mL sf9昆虫细胞,27℃,110rpm条件下培养细胞48小时。 The P2-generation recombinant baculovirus was used to transfect 1 L of sf9 insect cells at a density of 4×10 6 /mL at a ratio of 1:50, and the cells were cultured for 48 hours at 27°C and 110 rpm.
细胞培养结束后,4℃,4000rpm离心20分钟,收集细胞,用100mL Buffer A重悬细胞沉淀,4℃下搅拌10分钟使细胞充分裂解,裂解后的细胞于4℃,15000rpm的条件下离心10分钟,弃上清,沉淀用25mL Buffer B重悬并使用匀浆器进行匀浆,匀浆液于4℃下进行溶膜,溶膜时长为90分钟。溶膜结束后,于4℃,37000rpm条件下离心15分钟,上清液与镍亲和层析填料孵育1小时,之后用Buffer C、Buffer D洗脱杂蛋白,用Buffer E洗脱目的蛋白。将含有目的蛋白的洗脱液加载到Flag亲和层析柱上,用Buffer F洗脱杂蛋白,Buffer G洗脱目的蛋白,之后用50KDa的超滤管对目的蛋白进行浓缩,浓缩至体积为500μL左右时,进行凝胶过滤层析,所用凝胶柱型号为Superdex 200 Increase 10/300GL(cytiva),缓冲液为Buffer H,收集UV-280紫外吸收峰处的蛋白样品进行SDS-PAGE凝胶电泳检测目的蛋白的含量与纯度。After the cell culture is over, centrifuge at 4°C and 4000rpm for 20 minutes to collect the cells, resuspend the cell pellet with 100mL Buffer A, stir at 4°C for 10 minutes to fully lyse the cells, and centrifuge the lysed cells at 4°C and 15000rpm for 10 minutes Discard the supernatant, resuspend the pellet with 25mL Buffer B and homogenize with a homogenizer, dissolve the homogenate at 4°C for 90 minutes. After dissolving the membrane, centrifuge at 4°C and 37,000rpm for 15 minutes, incubate the supernatant with nickel affinity chromatography filler for 1 hour, then use Buffer C and Buffer D to elute the impurity protein, and use Buffer E to elute the target protein. Load the eluate containing the target protein onto the Flag affinity chromatography column, use Buffer F to elute the impurity protein, and Buffer G to elute the target protein, and then use a 50KDa ultrafiltration tube to concentrate the target protein to a volume of At about 500 μL, perform gel filtration chromatography, the gel column model used is Superdex 200 Increase 10/300GL (cytiva), the buffer is Buffer H, and the protein samples at the UV-280 ultraviolet absorption peak are collected for SDS-PAGE gel The content and purity of the target protein were detected by electrophoresis.
其中,上述缓冲液(Buffer)A-F具体成分如下:Wherein, the above-mentioned buffer solution (Buffer) A-F specific composition is as follows:
Buffer A:20mM Tris,pH 7.5,2mg/mL碘乙酰胺(Iodoacetamide);Buffer A: 20mM Tris, pH 7.5, 2mg/mL iodoacetamide (Iodoacetamide);
Buffer B:20mM Tris,pH 7.5,1mg/mL碘乙酰胺,750mM NaCl,0.5%LMNG,0.03%CHS,0.2%胆酸钠(sodium cholate),1/1000蛋白酶抑制剂;Buffer B: 20mM Tris, pH 7.5, 1mg/mL iodoacetamide, 750mM NaCl, 0.5% LMNG, 0.03% CHS, 0.2% sodium cholate, 1/1000 protease inhibitor;
Buffer C:20mM Tris,pH 7.5,150mM NaCl,0.05%LMNG,0.003%CHS,0.02%胆酸钠,1/1000蛋白酶抑制剂,20mM咪唑(Imidazole);Buffer C: 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 20mM imidazole (Imidazole);
Buffer D:20mM Tris,pH 7.5,150mM NaCl,0.05%LMNG,0.003%CHS,0.02%胆酸钠,1/1000蛋白酶抑制剂,30mM咪唑;Buffer D: 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 30mM imidazole;
Buffer E:20mM Tris,pH 7.5,150mM NaCl,0.05%LMNG,0.003%CHS,0.02%胆酸钠,1/1000蛋白酶抑制剂,250mM咪唑;Buffer E: 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 250mM imidazole;
Buffer F:20mM Tris,pH 7.5,150mM NaCl,0.05%LMNG,0.003%CHS,0.02%胆酸钠,1/1000蛋白酶抑制剂;Buffer F: 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor;
Buffer G:20mM Tris,pH 7.5,150mM NaCl,0.05%LMNG,0.003%CHS,0.02%胆酸钠,1/1000蛋白酶抑制剂,0.13mg/mL Flag肽;Buffer G: 20mM Tris, pH 7.5, 150mM NaCl, 0.05% LMNG, 0.003% CHS, 0.02% sodium cholate, 1/1000 protease inhibitor, 0.13mg/mL Flag peptide;
Buffer H:20mM Tris,pH 7.5,150mM NaCl,0.00075%LMNG,0.0001%CHS,0.00025%GDN,1/1000蛋白酶抑制剂,100μMBuffer H: 20mM Tris, pH 7.5, 150mM NaCl, 0.00075% LMNG, 0.0001% CHS, 0.00025% GDN, 1/1000 protease inhibitor, 100μM
三(2-羧乙基)膦(TCEP)。Tris(2-carboxyethyl)phosphine (TCEP).
实验结果:如图6所示,在凝胶过滤层析实验中,当Buffer H洗脱体积达11.7mL时改造型的GPR75开始出现UV-280吸收峰,最大吸值为228.2mAu,对应的缓冲液洗脱体积为12.6mL。如图6所示,与截断型GPR75(无BRIL融合且未缺失野生型GPR75的N端无规则序列)相比改造型GPR75表达量有明显提高。改造型GPR75也具有更高比例的单体峰。改造后的GPR75蛋白分子量为58.03KDa,如图7A和图7B所示,经过亲和层析纯化、凝胶过滤层析纯化后得到的蛋白经过SDS-PAGE凝胶电泳分析,其纯度约为90%。冷冻电镜数据显示,样品的聚集状态良好,可用于进一步的结构解析如图7A和图7B所示。Experimental results: As shown in Figure 6, in the gel filtration chromatography experiment, when the elution volume of Buffer H reached 11.7mL, the modified GPR75 began to show UV-280 absorption peak, and the maximum absorption value was 228.2mAu. The liquid elution volume was 12.6 mL. As shown in Figure 6, compared with the truncated GPR75 (without BRIL fusion and without deletion of the N-terminal random sequence of wild-type GPR75), the expression level of the modified GPR75 was significantly increased. The engineered GPR75 also has a higher proportion of monomer peaks. The modified GPR75 protein has a molecular weight of 58.03KDa, as shown in Figure 7A and Figure 7B. After purification by affinity chromatography and gel filtration chromatography, the protein obtained by SDS-PAGE gel electrophoresis analysis shows that its purity is about 90 %. Cryo-electron microscopy data show that the aggregation state of the sample is good, which can be used for further structural analysis as shown in Figure 7A and Figure 7B.
测试例test case
测试例1、改造型GPR75蛋白的活性鉴定Test example 1, activity identification of modified GPR75 protein
为了验证实施例中制备、纯化后改造型GPR75蛋白是否具有活性,本测试例利用G蛋白偶联受体能够激活下游的Gq蛋白,促进Gq蛋白对GTP的水解效率进行测定 21。实验步骤根据GTPase-Glo TM Assay(Promega)试剂盒说明书进行。该方法的原理是,在实验体系中加入10μM GTP分子,由于Gq蛋白具有GTP水解活性,将逐渐消耗体系中的GTP分子。无配体结合的改造型GPR75蛋白具有本底水平的激活活性,将加速体系中GTP消耗。 In order to verify whether the modified GPR75 protein prepared and purified in the example has activity, this test example utilizes G protein-coupled receptors to activate the downstream Gq protein and promote the hydrolysis efficiency of Gq protein to GTP to be measured 21 . The experimental steps were carried out according to the instructions of the GTPase-Glo TM Assay (Promega) kit. The principle of this method is that when 10 μM GTP molecules are added to the experimental system, since the Gq protein has GTP hydrolysis activity, the GTP molecules in the system will be gradually consumed. The modified GPR75 protein without ligand binding has a background level of activation activity, which will accelerate the consumption of GTP in the system.
具体步骤如下:首先,配置实验所用缓冲液条件:20mM Tris pH 7.5,100mM NaCl,0.01%MNG,100μM TCEP,5mM MgCl 2。实验中分别将纯化后的对照缓冲液、Gq蛋白、改造型GPR75蛋白、改造型GPR75蛋白-Gq蛋白复合物、改造型GPR75蛋白-Gq蛋白-20-HETE配体复合物分别与10μM的GTP混合,其中改造型GPR75蛋白与Gq蛋白的浓度均为3μM,20-HETE浓度为10μM。将上述样品在室温孵育2小时。随后配置Glo反应溶液:将试剂盒中Glo试剂稀释500倍到双蒸水中,并加入10μM的ADP分 子。取20μL Glo反应溶液按1:1的体积比加入到前一步的5个样品,孵育30分钟。随后,将40μL Glo检测溶液按1:1的体积比,加入到上一步。最后,分装样品到384孔板,用Ensight酶标仪(perkinelmer)进行读值。 The specific steps are as follows: First, the buffer conditions used in the experiment were configured: 20 mM Tris pH 7.5, 100 mM NaCl, 0.01% MNG, 100 μM TCEP, 5 mM MgCl 2 . In the experiment, the purified control buffer, Gq protein, modified GPR75 protein, modified GPR75 protein-Gq protein complex, and modified GPR75 protein-Gq protein-20-HETE ligand complex were mixed with 10 μM GTP , wherein the concentrations of the modified GPR75 protein and Gq protein were both 3 μM, and the concentration of 20-HETE was 10 μM. The above samples were incubated at room temperature for 2 hours. Then configure the Glo reaction solution: dilute the Glo reagent in the kit 500 times into double distilled water, and add 10 μM ADP molecules. Take 20 μL of the Glo reaction solution and add it to the 5 samples in the previous step at a volume ratio of 1:1, and incubate for 30 minutes. Subsequently, 40 μL of Glo detection solution was added to the previous step at a volume ratio of 1:1. Finally, the samples were dispensed into 384-well plates and read with an Ensight microplate reader (perkinelmer).
相比Gq蛋白本身具有的水解GTP活性,加入改造型GPR75蛋白后,Gq蛋白的水解活性增强(图8A)。这说明,无配体结合状态的改造型GPR75蛋白具有一定的水平的本底活性。本测试例发现,文献报道的GPR75蛋白的配体20-HETE,表现出抑制改造型GPR75蛋白激活的效果。为了进一步研究20-HETE的效果,本测试例对20-HETE的IC 50进行测定(图8B),结果显示,20-HETE的IC 50值约为2nM。这说明,改造型GPR75具有一定的活性,可见,本公开提供的改造型GPR75可以结合野生型GPR75的配体,例如20-HETE,可以应用于GPR75结构解析、GPR75活性分析,以及相关的核酸编码小分子库筛选、计算机辅助的药物设计和药物筛选等。并且如实施例中所证实的,相比野生型、截断型GPR75,本公开提供的改造型GPR75具有更高的表达量,适于后续的结构解析等应用。 Compared with the GTP hydrolysis activity of the Gq protein itself, the hydrolysis activity of the Gq protein was enhanced after the modified GPR75 protein was added ( FIG. 8A ). This shows that the engineered GPR75 protein in the state of no ligand binding has a certain level of background activity. In this test case, it was found that the ligand 20-HETE of the GPR75 protein reported in the literature showed the effect of inhibiting the activation of the modified GPR75 protein. In order to further study the effect of 20-HETE, the IC 50 of 20-HETE was determined in this test example ( FIG. 8B ), and the result showed that the IC 50 value of 20-HETE was about 2nM. This shows that the modified GPR75 has a certain activity. It can be seen that the modified GPR75 provided by the present disclosure can bind to the ligand of wild-type GPR75, such as 20-HETE, and can be applied to GPR75 structure analysis, GPR75 activity analysis, and related nucleic acid coding Small molecule library screening, computer-aided drug design and drug screening, etc. And as demonstrated in the examples, compared with wild-type and truncated GPR75, the modified GPR75 provided by the present disclosure has a higher expression level, which is suitable for subsequent applications such as structural analysis.
测试例2、改造型GPR75蛋白用于结构解析工作Test example 2. The modified GPR75 protein is used for structural analysis
为了进一步的利用改造型GPR75蛋白进行结构解析工作,本测试例将实施例中制备、纯化后的改造型GPR75蛋白与抗BRIL的fab片段进行孵育,并获得了通过分子筛进行复合物的纯化(图9A)。纯化后的复合物在进一步的SDS-PAGE实验得到验证(图9B)。并且,如图9C所示,通过冷冻电镜单颗粒二维分类显示出受体和与抗BRIL的fab片段的复合物特征。测试例1和2说明,改造型GPR75中,GPR75蛋白部分保留了野生型GPR75的配体结合位点,且BRIL融合蛋白也可被其抗体识别,在电镜结构解析中,可以作为一个标志物。随后,本测试例中,将获得的稳定复合物进行冷冻制样,电镜数据收集及结构解析工作。单颗粒二维分类数据显示,改造型75蛋白-抗BRIL的fab片段形成较稳定的复合物,这为进一步对改造型GPR75蛋白进行结构解析工作奠定了坚实的基础。In order to further use the modified GPR75 protein for structural analysis, this test example incubated the modified GPR75 protein prepared and purified in the examples with the fab fragment of anti-BRIL, and obtained the purification of the complex through molecular sieves (Fig. 9A). The purified complex was verified in further SDS-PAGE experiments (Fig. 9B). And, as shown in Figure 9C, 2D sorting of single particles by cryo-EM revealed the signature of receptors and complexes with anti-BRIL fab fragments. Test examples 1 and 2 show that in the modified GPR75, the GPR75 protein partially retains the ligand-binding site of the wild-type GPR75, and the BRIL fusion protein can also be recognized by its antibody, which can be used as a marker in the analysis of the electron microscope structure. Subsequently, in this test example, the obtained stable complex was frozen for sample preparation, electron microscope data collection and structural analysis. The single-particle two-dimensional classification data showed that the modified 75 protein-anti-BRIL fab fragment formed a relatively stable complex, which laid a solid foundation for further structural analysis of the modified GPR75 protein.
以上示例性实施方式所呈现的描述仅用以说明本公开的技术方案,并不想要成为毫无遗漏的,也不想要把本公开限制为所描述的精确形式。显然,本领域的普通技术人员根据上述教导做出很多改变和变化都是可能的。选择示例性实施方式并进行描述是为了解释本公开的特定原理及其实际应用,从而使得本领域的其它技术人员便于理解、实现并利用本公开的各种示例性实施方式及其各种选择形式和修改形式。本公开的保护范围意在由所附权利要求书及其等效形式所限定。The descriptions presented above of the exemplary embodiments are only intended to illustrate the technical solutions of the present disclosure and are not intended to be exhaustive nor to limit the present disclosure to the precise forms described. Obviously, many modifications and variations are possible to those skilled in the art based on the above teaching. The exemplary embodiments were chosen and described in order to explain the specific principles of the present disclosure and its practical application, so that others skilled in the art can easily understand, implement and use the various exemplary embodiments of the present disclosure and various alternatives thereof and modified form. It is intended that the scope of protection of the present disclosure be defined by the claims appended hereto and their equivalents.
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Claims (10)

  1. 一种改造型GPR75,其特征在于,所述改造型GPR75包含:A modified GPR75, characterized in that the modified GPR75 comprises:
    第一结构域,所述第一结构域包含源自β2肾上腺素受体的氨基酸序列;和,a first domain comprising an amino acid sequence derived from a β2 adrenoceptor; and,
    第二结构域,所述第二结构域为在野生型GPR75中缺失第五跨膜螺旋和第六跨膜螺旋之间的无规则序列以及N端、C端的无规则序列、并通过源自BRIL融合蛋白的氨基酸序列连接在所述第五跨膜螺旋和所述第六跨膜螺旋之间的结构域。The second structural domain, the second structural domain is the random sequence between the fifth transmembrane helix and the sixth transmembrane helix and the random sequence at the N-terminal and C-terminal in the wild-type GPR75, and is derived from BRIL The amino acid sequence of the fusion protein connects the domain between the fifth transmembrane helix and the sixth transmembrane helix.
  2. 根据权利要求1所述的改造型GPR75,其特征在于,所述第一结构域包含如SEQ ID NO:4所示的氨基酸序列或与SEQ ID NO:4所示的氨基酸序列具有至少80%同源性的氨基酸序列;和/或The modified GPR75 according to claim 1, wherein the first structural domain comprises the amino acid sequence shown in SEQ ID NO: 4 or has at least 80% identity with the amino acid sequence shown in SEQ ID NO: 4 source amino acid sequence; and/or
    所述第二结构域包含如SEQ ID NO:3所示的氨基酸序列或与SEQ ID NO:3所示的氨基酸序列具有至少80%同源性的氨基酸序列。The second domain comprises the amino acid sequence shown in SEQ ID NO: 3 or an amino acid sequence having at least 80% homology with the amino acid sequence shown in SEQ ID NO: 3.
  3. 根据权利要求1或2所述的改造型GPR75,其特征在于,所述改造型GPR75包含以下序列中的一种或多种:The modified GPR75 according to claim 1 or 2, wherein the modified GPR75 comprises one or more of the following sequences:
    (i)如SEQ ID NO:5所示的氨基酸序列;(i) amino acid sequence as shown in SEQ ID NO:5;
    (ii)与SEQ ID NO:5所示的氨基酸序列具有至少80%、82%、85%、87%、90%、92%、95%、96%、97%、98%或99%同一性的氨基酸序列,并且其保留如SEQ ID NO:5所示的氨基酸序列的结合特异性配体的功能;(ii) at least 80%, 82%, 85%, 87%, 90%, 92%, 95%, 96%, 97%, 98%, or 99% identity to the amino acid sequence shown in SEQ ID NO:5 The amino acid sequence, and it retains the function of binding the specific ligand of the amino acid sequence shown in SEQ ID NO:5;
    (iii)在SEQ ID NO:5所示的氨基酸序列中添加、取代、缺失或插入1个或多个氨基酸残基的氨基酸序列,并且其保留如SEQ ID NO:5所示的氨基酸序列的结合特异性配体的功能;或者,(iii) an amino acid sequence in which one or more amino acid residues are added, substituted, deleted or inserted in the amino acid sequence shown in SEQ ID NO: 5, and it retains the combination of the amino acid sequence shown in SEQ ID NO: 5 function of the specific ligand; or,
    (iv)由核苷酸序列编码的氨基酸序列,所述核苷酸序列与编码如SEQ ID NO:5所示的氨基酸序列的多核苷酸序列在严格条件下杂交,并且所述氨基酸序列保留以SEQ ID NO:5所示的氨基酸序列的结合特异性配体的功能,所述严格条件是中等严格条件,中-高严格条件,高严格条件或非常高严格条件。(iv) an amino acid sequence encoded by a nucleotide sequence that hybridizes to a polynucleotide sequence encoding an amino acid sequence as shown in SEQ ID NO: 5 under stringent conditions, and the amino acid sequence remains in The amino acid sequence shown in SEQ ID NO:5 binds to the function of a specific ligand, and the stringent conditions are medium stringent conditions, medium-high stringent conditions, high stringent conditions or very high stringent conditions.
  4. 根据权利要求1或2所述的改造型GPR75,其特征在于,所述改造型GPR75还包含标签、蛋白酶切割位点、信号肽、肽接头或其任意组合。The modified GPR75 according to claim 1 or 2, wherein the modified GPR75 further comprises a label, a protease cleavage site, a signal peptide, a peptide linker or any combination thereof.
  5. 根据权利要求4所述的改造型GPR75,其特征在于,所述改造型GPR75在其N端和/或C端包含标签;和/或,The modified GPR75 according to claim 4, wherein the modified GPR75 comprises a tag at its N-terminus and/or C-terminus; and/or,
    所述改造型GPR75在其N端包含信号肽;和/或,The engineered GPR75 comprises a signal peptide at its N-terminus; and/or,
    所述蛋白酶切割位点位于相邻的两个元件之间;所述元件选自第一结构域、第二结构域、标签、信号肽和肽接头。The protease cleavage site is located between two adjacent elements; the elements are selected from the group consisting of a first domain, a second domain, a tag, a signal peptide and a peptide linker.
  6. 根据权利要求4所述的改造型GPR75,其特征在于,所述的改造型GPR75包含以下序列中的一种或多种:The modified GPR75 according to claim 4, wherein the modified GPR75 comprises one or more of the following sequences:
    (i)如SEQ ID NO:13所示的氨基酸序列;(i) amino acid sequence as shown in SEQ ID NO:13;
    (ii)与SEQ ID NO:13所示的氨基酸序列具有至少80%、82%、85%、87%、90%、92%、95%、96%、97%、98%或99%同一性的氨基酸序列,并且其保留如SEQ ID NO:13所示的氨基酸序列的结合特异性配体的功能;(ii) at least 80%, 82%, 85%, 87%, 90%, 92%, 95%, 96%, 97%, 98% or 99% identity to the amino acid sequence shown in SEQ ID NO: 13 The amino acid sequence, and it retains the function of binding the specific ligand of the amino acid sequence shown in SEQ ID NO:13;
    (iii)在SEQ ID NO:13所示的氨基酸序列中添加、取代、缺失或插入1个或多个氨基酸残基的氨基酸序列,并且其保留如SEQ ID NO:13所示的氨基酸序列的结合特异性配体的功能;或者,(iii) an amino acid sequence in which 1 or more amino acid residues are added, substituted, deleted or inserted in the amino acid sequence shown in SEQ ID NO: 13, and which retains the combination of the amino acid sequence shown in SEQ ID NO: 13 function of the specific ligand; or,
    (iv)由核苷酸序列编码的氨基酸序列,所述核苷酸序列与编码如SEQ ID NO:13所示的氨基酸序列的多核苷酸序列在严格条件下杂交,并且所述氨基酸序列保留以SEQ ID No:13所示的氨基酸序列的结合特异性配体的功能,所述严格条件是中等严格条件,中-高严格条件,高严格条件或非常高严格条件。(iv) an amino acid sequence encoded by a nucleotide sequence that hybridizes to a polynucleotide sequence encoding an amino acid sequence as shown in SEQ ID NO: 13 under stringent conditions, and the amino acid sequence is retained by The amino acid sequence shown in SEQ ID No: 13 binds to the function of a specific ligand, and the stringent conditions are medium stringent conditions, medium-high stringent conditions, high stringent conditions or very high stringent conditions.
  7. 一种多核苷酸,其编码权利要求1至6中任一项所述的改造型GPR75。A polynucleotide encoding the modified GPR75 according to any one of claims 1 to 6.
  8. 一种表达载体,其包含权利要求7所述的多核苷酸。An expression vector comprising the polynucleotide according to claim 7.
  9. 一种宿主细胞,其包含权利要求8所述的表达载体。A host cell comprising the expression vector of claim 8.
  10. 如权利要求1至6中任一项所述的改造型GPR75、如权利要求7所述的多核苷酸、如权利要求8所述的表达载体或如权利要求9所述的宿主细胞在用于GPR75结构解析、荧光分子标记、磷酸化多肽或信号蛋白的融合、GPR75活性分析、核酸编码小分子库筛选、计算机辅助的药物设计和药物筛选中的用途。The modified GPR75 according to any one of claims 1 to 6, the polynucleotide according to claim 7, the expression vector according to claim 8 or the host cell according to claim 9 are used in GPR75 structure analysis, fluorescent molecular labeling, fusion of phosphorylated polypeptides or signaling proteins, GPR75 activity analysis, screening of nucleic acid-encoded small molecule libraries, computer-aided drug design and drug screening.
PCT/CN2022/117816 2022-03-04 2022-09-08 Modified gpr75 and uses thereof WO2023165108A1 (en)

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