WO2023159572A1 - Detection kit, primer composition and detection method for novel coronavirus sars-cov-2 - Google Patents

Detection kit, primer composition and detection method for novel coronavirus sars-cov-2 Download PDF

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WO2023159572A1
WO2023159572A1 PCT/CN2022/078307 CN2022078307W WO2023159572A1 WO 2023159572 A1 WO2023159572 A1 WO 2023159572A1 CN 2022078307 W CN2022078307 W CN 2022078307W WO 2023159572 A1 WO2023159572 A1 WO 2023159572A1
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primer
gene
cov
loop
orflab
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PCT/CN2022/078307
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颜菁
袁青
刘艳
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江苏汇先医药技术有限公司
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  • the invention belongs to the field of detection kits, and relates to a detection kit, a primer composition, and a detection method for novel coronavirus SARS-CoV-2, in particular to a detection reagent for detecting novel coronavirus SARS-CoV-2 based on a LAMP method box.
  • Novel coronavirus pneumonia is an acute respiratory infectious disease caused by severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2 or 2019-nCoV) infection, mainly lung lesions, clinical manifestations are fever , fatigue, dry cough as the main manifestations, nasal congestion, runny nose and other upper respiratory symptoms are rare. About half of the patients developed dyspnea more than a week later, and severe cases rapidly progressed to acute respiratory distress syndrome, septic shock, metabolic acidosis that was difficult to correct, and coagulation dysfunction.
  • SARS-CoV-2 or 2019-nCoV severe acute respiratory syndrome coronavirus type 2
  • the in vitro nucleic acid detection of the new coronavirus is mainly used to judge whether it is infected with the new coronavirus.
  • Fluorescence RT-PCR method which is widely used at present, although this method is widely used now, has certain deficiencies in detection accuracy and sensitivity, and requires large precision instruments and professional technicians to operate, which invisibly causes detection Due to the long time and high cost of detection, the detection of the new coronavirus can only be completed in professional genetic testing institutions or tertiary hospitals, and it cannot yet become an on-site instant detection method for the new coronavirus, which cannot effectively alleviate the current shortage of new coronavirus detection. question.
  • the object of the present invention is to provide a kind of detection kit and primer composition, detection method of novel coronavirus SARS-CoV-2, while its detection accuracy rate is higher, sensitivity is better and easy to operate, detection The time is shorter.
  • a detection kit for novel coronavirus SARS-CoV-2 includes the first primer set for the Orflab gene of the novel coronavirus SARS-CoV-2 and the primer set for the novel coronavirus SARS-CoV-2.
  • F3 5'-TGTTTTAAGCGGACACAATC-3', SEQ ID NO.1;
  • FIP 5'-AGCACTCTTAAGAAGTTGAATGTCTTGCTAAACACTGTCTTCATG-3', SEQ ID NO.3;
  • F3 5'-CGGCAGTCAAGCCTCTTC-3', SEQ ID NO.7;
  • FIP 5'-TCCCCTACTGCTGCCTGGAGCGTTCCTCATCACGTAGTCG-3', SEQ ID NO.9;
  • each primer is individually packaged. Dilute and mix before use. More preferably, the molar ratio of the primers Orflab-F3, Orflab-B3, Orflab-FIP, Orflab-BIP, Orflab-LF and Orflab-LB of the first primer set is preferably 1:1:8:8:4:4, It has a good amplification effect on the Orflab gene, obtains the lowest detection limit on the Orflab gene, and improves the accuracy of the detection result.
  • the molar ratio of the primers N-F3, N-B3, N-FIP, N-BIP and N-LF of the second primer set is preferably 1:1:8:8:4, which has better amplification of the N gene The effect is to obtain the lowest detection limit for the N gene and improve the accuracy of the detection results.
  • each primer of the first primer set forms the first primer mixture; each primer of the second primer set forms the second primer mixture.
  • the molar ratio of the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, loop primer LF, and loop primer LB of the first primer set is 1:1 :8:8:4:4; in the second primer mixture, the molar ratio of the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, and loop primer LB of the second primer set is 1 :1:8:8:4.
  • the detection kit also includes a combination of one or more of the following substances: dNTPs, MgCl 2 , 10 ⁇ Isothermo Buffer, enzyme, 20 ⁇ EvaGreen Dye, template and ddH 2 0.
  • the kit also includes a positive quality control product, and the positive quality control product includes an armored virus containing a target fragment of the Orflab gene and an armored virus containing a target fragment of the N gene.
  • the template includes an armored virus containing a target fragment of an Orflab gene and an armored virus containing a target fragment of an N gene.
  • the interpretation standard of the detection kit is: if the fluorescence curves for the Orflab gene and the N gene all have "S" shaped curves, it is judged as positive; if the fluorescence curves for the Orflab gene and the N gene If neither of the curves has an "S"-shaped curve, it is judged as negative; if one of the fluorescence curves for the Orflab gene and the N gene has an "S"-shaped curve and the other does not have an "S”-shaped curve, re-test, if still If one has an "S"-shaped curve and the other does not have an “S”-shaped curve, it is judged as positive.
  • a primer composition for a novel coronavirus SARS-CoV-2 comprising a first primer set directed at the Orflab gene of the novel coronavirus SARS-CoV-2 and directed against the novel coronavirus
  • the second primer set of the N gene of the virus SARS-CoV-2 includes the outer primer F3, outer primer B3, outer primer B3, Inner primer FIP, inner primer BIP, loop primer LF and loop primer LB
  • the second primer set includes outer primer F3 and outer primer B3 whose nucleotide sequences are sequentially shown in SEQ ID NO.7 ⁇ SEQ ID NO.11 , inner primer FIP, inner primer BIP, and loop primer LB.
  • a method for detecting the novel coronavirus SARS-CoV-2 for non-diagnostic and therapeutic purposes using the above-mentioned detection kit or the above-mentioned primer composition, after mixing with the sample, A loop-mediated isothermal amplification reaction was performed.
  • the procedure of the amplification reaction is to react at 60-65°C for 18-30 minutes. More preferably, the procedure of the amplification reaction is to react at 65°C for 20 minutes.
  • the first amplification system is used to detect the Orflab gene in the sample, wherein: the first amplification system includes the first primer set, dNTPs, MgCl 2 , 10 ⁇ Isothermo Buffer, enzyme, 20 ⁇ EvaGreen Dye, template and ddH 2 0. More preferably, the template comprises an armored virus containing a target segment of the Orflab gene.
  • the second amplification system is used to detect the N gene in the sample, wherein: the second amplification system includes the second primer set, dNTPs, MgCl 2 , 10 ⁇ Isothermo Buffer, enzyme, 20 ⁇ EvaGreen Dye, template and ddH 2 0. More preferably, the template comprises an armored virus containing a target segment of the N gene.
  • the concentration of the primer composition is 0.2-2 ⁇ M
  • the concentration of dNTPs is 1.0-2.0 mM
  • the concentration of MgCl 2 is 5-10 mM.
  • the molar ratio of the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, loop primer LF and loop primer LB of the first primer set is 1:1:8:8:4:4,
  • the molar ratio of the outer primer F3, the outer primer B3, the inner primer FIP, the inner primer BIP, and the loop primer LB of the second primer set is 1:1:8:8:4.
  • samples are respectively added to the first amplification system and the second amplification system, and loop-mediated isothermal amplification is performed respectively, so as to simultaneously detect whether the samples contain the Orflab gene and the N gene.
  • the present invention adopts the above scheme, and has the following advantages compared with the prior art:
  • the detection kit, primer composition, and detection method of the novel coronavirus SARS-CoV-2 of the present invention are detected based on the loop-mediated isothermal amplification method, and are respectively aimed at 6 of the Orflab gene and the N gene of the SARS-CoV-2 virus.
  • Design 4 specific primers for each region add 2 or 1 loop primers, and perform amplification in a constant temperature environment of 60-65°C, with good sensitivity (the lowest detection limit can reach 10copies/mL and 50copies/mL) , the operation is simple, and the time is short; and it can detect the multi-gene loci of the SARS-CoV-2 virus at the same time, which improves the accuracy of the detection; and does not rely on expensive professional equipment, and can be operated by ordinary personnel without specialization , providing the possibility for on-site instant detection of SARS-CoV-2 virus.
  • Fig. 1 is the minimum detection limit experimental result figure of the SARS-CoV-2 virus Orflab gene target of the kit of embodiment 2;
  • Fig. 2 is the minimum detection limit experimental result graph of the SARS-CoV-2 virus N gene target of the kit of Example 2.
  • primers were synthesized by General Biosystems (Anhui) Co., Ltd.; dNTPs were purchased from Suo Laibao Biotechnology Co., Ltd.; nucleic acid dye 20 ⁇ EvaGreen Dye was purchased from biotium; new crown orf1ab and N gene pseudovirus Synthesized by Shanghai Kamin Biotechnology Co., Ltd.
  • This embodiment designs and screens the primers for detecting the new coronavirus SARS-CoV-2 based on RT-LAMP, specifically including the RT-LAMP primer set for detecting the Orflab gene of the new coronavirus SARS-CoV-2 and detecting the new coronavirus SARS-CoV-2
  • RT-LAMP primer set for the N gene the specific process is described below.
  • NCBI downloaded other common coronaviruses and used them to design RT-LAMP primer sets. Specifically: Viral HCoV-229E, HCoV-OC43, HCoV-NL63, HCoV-HKU1, SARS-CoV and MERS-CoV sequences, BioEdit and SnapGene sequence comparison analysis, to obtain specific Orflab fragments and N fragment sequences.
  • the armored virus containing the Orflab target fragment was serially diluted with ddH 2 0, and the copy numbers were 10 6 copies/mL, 10 5 copies/mL, 10 4 copies/mL, and 10 3 copies/mL.
  • the armored virus containing the N gene target fragment was serially diluted with ddH 2 0, and the copy numbers were 10 6 copies/mL, 10 5 copies/mL, 10 4 copies/mL, and 10 3 copies/mL.
  • Amplification reaction system amplification primer Mix 2.2 ⁇ L, dNTPs 1.0-2.0mM, MgCl2: 5-10mM, 10 ⁇ Isothermo Buffer 2.5 ⁇ L, enzyme Mix 0.2 ⁇ L, 20X EvaGreen Dye 1 ⁇ L, template 5 ⁇ L, add ddH20 to make up to 25 ⁇ L, the amplification primer reaction program is 65° C. for 20 min.
  • the template includes two types, the template for the amplification reaction system of the Orflab gene is an armored virus containing the target fragment of the Orflab gene, and the template for the amplification reaction system of the Orflab gene is an armored virus containing the target fragment of the N gene.
  • the primers with the best amplification effect of the Orf1ab gene are the primers of the second group, and the primers of the third group are the best with the amplification effect of the N gene.
  • Embodiment 2 detection kit
  • the detection kit includes: first primer set, second primer set, dNTPs, MgCl 2 , 10 ⁇ Isothermo Buffer, enzyme, 20 ⁇ EvaGreen Dye, ddH 2 0.
  • the first primer set is the second primer set in Table 1
  • the second primer set is the third primer set in Table 2, and each primer is packaged independently.
  • the kit also includes templates used as positive quality controls, including two armored viruses containing Orflab gene and N gene target fragments as templates, which were synthesized by Shanghai Kamin Biotechnology Co., Ltd.
  • amplification reaction system including: amplification primer Mix 2.2 ⁇ L, dNTPs 1.4 mM, MgCl 2 8 mM, 10 ⁇ Isothermo Buffer 2.5 ⁇ L, enzyme Mix 0.2 ⁇ L, 20X EvaGreen Dye 1 ⁇ L, template 5 ⁇ L, add ddH20 Make up to 25 ⁇ L.
  • the amplification primer Mix in the first amplification reaction system is a mixture of primers F3, B3, FIP, BIP, LF and LB for the Orflab gene
  • the template is a mixture containing the Orflab gene target
  • the amplification primer Mix in the second amplification reaction system is a mixture of primers F3, B3, FIP, BIP, LF and LB for the N gene
  • the template is the armored virus containing the N gene target fragment.
  • the molar ratio of the primers Orflab-F3, Orflab-B3, Orflab-FIP, Orf1ab-BIP, Orflab-LF and Orflab-LB is preferably 1: 1:8:8:4:4.
  • the molar ratio of the primers N-F3, N-B3, N-FIP, N-BIP and N-LF is preferably 1:1:8: 8:4.
  • the primer mixture was prepared according to the molar ratio of the above primers.
  • the method of using the kit is as follows:
  • Sample processing Take a sample (such as a throat swab or oral swab sample) and transfer it to a centrifuge tube containing the sample lysate, shake and mix well, and wait for inspection;
  • a sample such as a throat swab or oral swab sample
  • step (1) Add the first amplification system (20 ⁇ L) and the liquid (5 ⁇ L) in step (1) to test tube 1, add the second amplification system (20 ⁇ L) and the liquid in step (1) to test tube 2 Liquid (5 ⁇ L), react in a nucleic acid detector at 65°C for 20 minutes;
  • an "S" curve indicates that the test sample contains the new coronavirus.
  • the two targets of the Orflab gene of the new coronavirus are consistent, it will be judged according to the consistent result; if one of the two targets is positive and the other is negative, the test will be repeated, and if the test result is still one negative and one positive, then it will be judged as positive. determination.
  • the armored virus containing the Orflab target fragment and the armored virus containing the N gene target fragment were serially diluted with ddH 2 0, and the copy numbers were 10 5 copies/mL, 10 4 copies/mL, 10 3 copies/mL, 100 copies/mL, 50copies/mL, 10copies/mL.
  • Use the kit of Example 2 to detect the Orflab target template according to the method described in Example 2 use the kit of Example 2 to detect the N gene target template according to the method described in Example 2, and determine the minimum detection method for positive nucleic acids quantity.
  • the minimum detection limit of the nucleic acid of the Orflab gene target of the new coronavirus SARS-CoV-2 is 10copies/mL; as shown in Figure 2, the minimum detection limit of the nucleic acid of the N gene target of the new coronavirus SARS-CoV-2 is 50copies /mL.
  • Influenza A virus H1N1
  • influenza B virus Yamagata
  • respiratory syncytial virus type A
  • adenovirus type 2
  • parainfluenza virus type 1
  • Middle East Respiratory Syndrome Coronavirus MERSr-CoV
  • Human Coronavirus HCoV-229E Human Coronavirus HCoV-HK U1, Human Coronavirus HCoV-NL63, Human Coronavirus HCoV-0C43
  • Influenza A Virus (H3N2) 13 viruses Influenza A virus (H5N1) and Influenza A virus (H7N9)
  • RNA virus genome extraction kit of Suleibao Biotechnology Co., Ltd. respectively.
  • Example 2 The kits in Example 2 were used to detect the above 13 viral nucleic acids, the Orflab gene target and N gene target templates were used as positive controls, and ddH 2 0 was used as a negative control.

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Abstract

Provided in the present invention are a detection kit, primer composition and detection method for novel coronavirus SARS-CoV-2. The detection kit for novel coronavirus SARS-CoV-2 comprises a first primer set for an Orflab gene of novel coronavirus SARS-CoV-2 and a second primer set for an N gene of novel coronavirus SARS-CoV-2; the first primer set comprises outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, loop primer LF and loop primer LB having nucleotide sequences sequentially as shown in SEQ ID NO. 1 to SEQ ID NO. 6; and the second primer set comprises outer primer F3, outer primer B3, inner primer FIP, inner primer BIP and loop primer LB having nucleotide sequences sequentially as shown in SEQ ID NO. 7 to SEQ ID NO. 11. The detection kit, primer composition and detection method for novel coronavirus SARS-CoV-2 of the present invention have high detection accuracy, good sensitivity, convenient operation and short detection time.

Description

新型冠状病毒SARS-CoV-2的检测试剂盒及引物组合物、检测方法Detection kit, primer composition and detection method of novel coronavirus SARS-CoV-2 技术领域technical field
本发明属于检测试剂盒领域,涉及一种新型冠状病毒SARS-CoV-2的检测试剂盒及引物组合物、检测方法,特别是一种基于LAMP方法检测新型冠状病毒SARS-CoV-2的检测试剂盒。The invention belongs to the field of detection kits, and relates to a detection kit, a primer composition, and a detection method for novel coronavirus SARS-CoV-2, in particular to a detection reagent for detecting novel coronavirus SARS-CoV-2 based on a LAMP method box.
背景技术Background technique
新型冠状病毒肺炎(COVID-19)是由严重急性呼吸综合征冠状病毒2型(SARS-CoV-2或2019-nCoV)感染引起的以肺部病变为主的急性呼吸道传染病,临床表现以发热、乏力、干咳为主要表现,鼻塞、流涕等上呼吸道症状少见。约半数患者多在一周后出现呼吸困难,严重者快速进展为急性呼吸窘迫综合征、脓毒征休克、难以纠正的代谢性酸中毒和出凝血功能障碍。Novel coronavirus pneumonia (COVID-19) is an acute respiratory infectious disease caused by severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2 or 2019-nCoV) infection, mainly lung lesions, clinical manifestations are fever , fatigue, dry cough as the main manifestations, nasal congestion, runny nose and other upper respiratory symptoms are rare. About half of the patients developed dyspnea more than a week later, and severe cases rapidly progressed to acute respiratory distress syndrome, septic shock, metabolic acidosis that was difficult to correct, and coagulation dysfunction.
目前主要通过对新冠病毒进行体外核酸检测来判断是否感染新冠病毒。目前被普遍应用的检测方法荧光RT-PCR法,该方法虽然现在被普遍应用,但是在检测准确度与灵敏度上也存在一定不足,且需要大型精密仪器和专业的技术人员操作,无形中造成检测时间过长、检测成本偏高现象,使新冠病毒的检测只能在专业的基因检测机构或三甲医院中操作完成,尚不能成为新冠病毒的现场即时检测手段,无法有效缓解目前新冠病毒检测供不应求的问题。At present, the in vitro nucleic acid detection of the new coronavirus is mainly used to judge whether it is infected with the new coronavirus. Fluorescence RT-PCR method, which is widely used at present, although this method is widely used now, has certain deficiencies in detection accuracy and sensitivity, and requires large precision instruments and professional technicians to operate, which invisibly causes detection Due to the long time and high cost of detection, the detection of the new coronavirus can only be completed in professional genetic testing institutions or tertiary hospitals, and it cannot yet become an on-site instant detection method for the new coronavirus, which cannot effectively alleviate the current shortage of new coronavirus detection. question.
发明内容Contents of the invention
针对上述技术问题,本发明的目的是提供一种新型冠状病毒SARS-CoV-2的检测试剂盒及引物组合物、检测方法,其检测准确率较高的同时,灵敏度较好且操作方便、检测时间较短。For above-mentioned technical problem, the object of the present invention is to provide a kind of detection kit and primer composition, detection method of novel coronavirus SARS-CoV-2, while its detection accuracy rate is higher, sensitivity is better and easy to operate, detection The time is shorter.
根据本发明的第一个方面,一种新型冠状病毒SARS-CoV-2的检测试剂盒,包括针对所述新型冠状病毒SARS-CoV-2的Orflab基因的第一引物组及针对所述新型冠状病毒SARS-CoV-2的N基因的第二引物组;所述第一引物组包括核苷酸序列依次如SEQ ID NO.1~SEQ ID NO.6所示的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB;所述第二引物组包括核苷酸序列依次如SEQ ID NO.7~SEQ ID NO.11所示的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB。According to the first aspect of the present invention, a detection kit for novel coronavirus SARS-CoV-2 includes the first primer set for the Orflab gene of the novel coronavirus SARS-CoV-2 and the primer set for the novel coronavirus SARS-CoV-2. The second primer set of the N gene of the virus SARS-CoV-2; the first primer set includes the outer primer F3, outer primer B3, outer primer B3, Inner primer FIP, inner primer BIP, loop primer LF and loop primer LB; the second primer set includes outer primer F3 and outer primer B3 whose nucleotide sequences are sequentially shown in SEQ ID NO.7~SEQ ID NO.11 , inner primer FIP, inner primer BIP, and loop primer LB.
针对SARS-CoV-2的Orflab基因的引物的核酸序列:The nucleotide sequence of the primer for the Orflab gene of SARS-CoV-2:
F3:5’-TGTTTTAAGCGGACACAATC-3’,SEQ ID NO.1;F3: 5'-TGTTTTAAGCGGACACAATC-3', SEQ ID NO.1;
B3:5’-GAACAGTATCTACACAAACTCTT-3’,SEQ ID NO.2;B3: 5'-GAACAGTATCTACACAAACTCTT-3', SEQ ID NO.2;
FIP:5’-AGCACTCTTAAGAAGTTGAATGTCTTGCTAAACACTGTCTTCATG-3’,SEQ ID NO.3;FIP: 5'-AGCACTCTTAAGAAGTTGAATGTCTTGCTAAACACTGTCTTCATG-3', SEQ ID NO.3;
BIP:5’-AATCAGCACGAAGTTCTACTTGCTGTATAGGGTCAGCACCAA-3’,SEQ ID NO.4;BIP: 5'-AATCAGCACGAAGTTCTACTTGCTGTATAGGGTCAGCACCAA-3', SEQ ID NO.4;
LF:5’-TCACCTTTGTTAACATTTGGGCC-3’,SEQ ID NO.5;LF: 5'-TCACCTTTGTTAACATTTGGGCC-3', SEQ ID NO.5;
LB:5’-ACCATTATTATCAGCTGGTATTT-3’,SEQ ID NO.6。LB: 5'-ACCATTATTATCAGCTGGTATTT-3', SEQ ID NO.6.
针对SARS-CoV-2的N基因的引物的核酸序列:The nucleotide sequence of the primer for the N gene of SARS-CoV-2:
F3:5’-CGGCAGTCAAGCCTCTTC-3’,SEQ ID NO.7;F3: 5'-CGGCAGTCAAGCCTCTTC-3', SEQ ID NO.7;
B3:5’-TTGCTCTCAAGCTGGTTCAA-3’,SEQ ID NO.8;B3: 5'-TTGCTCTCAAGCTGGTTCAA-3', SEQ ID NO.8;
FIP:5’-TCCCCTACTGCTGCCTGGAGCGTTCCTCATCACGTAGTCG-3’,SEQ ID NO.9;FIP: 5'-TCCCCTACTGCTGCCTGGAGCGTTCCTCATCACGTAGTCG-3', SEQ ID NO.9;
BIP:5’-TTCTCCTGCTAGAATGGCTGGCTCTGTCAAGCAGCAGCAAAG-3’,SEQ ID NO.10;BIP: 5'-TTCTCCTGCTAGAATGGCTGGCTCTGTCAAAGCAGCAGCAAAG-3', SEQ ID NO.10;
LB:5’-GCGGTGATGCTGCTCTTG-3’,SEQ ID NO.11。LB: 5'-GCGGTGATGCTGCTCTTG-3', SEQ ID NO.11.
在一优选的实施例中,每条所述引物单独封装。在使用前进行稀释和混合。更优选地,第一引物组的引物Orflab-F3、Orflab-B3、Orflab-FIP、Orf1ab-BIP、Orflab-LF和Orflab-LB的摩尔比优选为1:1:8:8:4:4,具有较好的对Orflab基因的扩增效果,获得对Orflab基因的最低的检测限,提高检测结果的准确性。第二引物组的引物N-F3、N-B3、N-FIP、N-BIP和N-LF的摩尔比优选为1:1:8:8:4,具有较好的对N基因的扩增效果,获得对N基因的最低的检测限,提高检测结果的准确性。在使用时,配制引物混合液,具体为:分别将FIP、BIP、B3、F3、LF、LB溶解成溶液,按照F3:B3:FIP:BIP:LF:LB=1:1:8:8:4:4的比例混合,若无LF引物,用ddH20补足。In a preferred embodiment, each primer is individually packaged. Dilute and mix before use. More preferably, the molar ratio of the primers Orflab-F3, Orflab-B3, Orflab-FIP, Orflab-BIP, Orflab-LF and Orflab-LB of the first primer set is preferably 1:1:8:8:4:4, It has a good amplification effect on the Orflab gene, obtains the lowest detection limit on the Orflab gene, and improves the accuracy of the detection result. The molar ratio of the primers N-F3, N-B3, N-FIP, N-BIP and N-LF of the second primer set is preferably 1:1:8:8:4, which has better amplification of the N gene The effect is to obtain the lowest detection limit for the N gene and improve the accuracy of the detection results. When in use, prepare the primer mixture, specifically: dissolve FIP, BIP, B3, F3, LF, and LB into solutions respectively, according to F3:B3:FIP:BIP:LF:LB=1:1:8:8: Mix at a ratio of 4:4, if there is no LF primer, make up with ddH20.
在一优选的实施例中,所述第一引物组的各引物组成第一引物混合液;所述第二引物组的 各引物组成第二引物混合液。In a preferred embodiment, each primer of the first primer set forms the first primer mixture; each primer of the second primer set forms the second primer mixture.
更优选地,所述第一引物混合液中,所述第一引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB的摩尔比为1:1:8:8:4:4;所述第二引物混合液中,所述第二引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB的摩尔比为1:1:8:8:4。More preferably, in the first primer mixture, the molar ratio of the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, loop primer LF, and loop primer LB of the first primer set is 1:1 :8:8:4:4; in the second primer mixture, the molar ratio of the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, and loop primer LB of the second primer set is 1 :1:8:8:4.
进一步地,所述检测试剂盒还包括以下物质中的一种或多种的组合:dNTPs、MgCl 2、10×Isothermo Buffer、酶、20×EvaGreen Dye、模板及ddH 20。 Further, the detection kit also includes a combination of one or more of the following substances: dNTPs, MgCl 2 , 10×Isothermo Buffer, enzyme, 20×EvaGreen Dye, template and ddH 2 0.
进一步地,所述试剂盒还包括阳性质控品,所述阳性质控品包括含有Orflab基因靶标片段的装甲病毒及含有N基因靶标片段的装甲病毒。Further, the kit also includes a positive quality control product, and the positive quality control product includes an armored virus containing a target fragment of the Orflab gene and an armored virus containing a target fragment of the N gene.
进一步地,所述模板包括含有Orflab基因靶标片段的装甲病毒及含有N基因靶标片段的装甲病毒。Further, the template includes an armored virus containing a target fragment of an Orflab gene and an armored virus containing a target fragment of an N gene.
在一优选的实施例中,所述检测试剂盒的判读标准为:若针对Orflab基因和N基因的荧光曲线均具有“S”形曲线,则判定为阳性;若针对Orflab基因和N基因的荧光曲线均无“S”形曲线,则判定为阴性;若针对Orflab基因和N基因的荧光曲线中一者具有“S”形曲线而另一者无“S”形曲线,则重新检测,若仍然为一者具有“S”形曲线而另一者无“S”形曲线,则判定为阳性。In a preferred embodiment, the interpretation standard of the detection kit is: if the fluorescence curves for the Orflab gene and the N gene all have "S" shaped curves, it is judged as positive; if the fluorescence curves for the Orflab gene and the N gene If neither of the curves has an "S"-shaped curve, it is judged as negative; if one of the fluorescence curves for the Orflab gene and the N gene has an "S"-shaped curve and the other does not have an "S"-shaped curve, re-test, if still If one has an "S"-shaped curve and the other does not have an "S"-shaped curve, it is judged as positive.
根据本发明的第二个方面,一种新型冠状病毒SARS-CoV-2的引物组合物,包括针对所述新型冠状病毒SARS-CoV-2的Orflab基因的第一引物组及针对所述新型冠状病毒SARS-CoV-2的N基因的第二引物组;所述第一引物组包括核苷酸序列依次如SEQ ID NO.1~SEQ ID NO.6所示的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB;所述第二引物组包括核苷酸序列依次如SEQ ID NO.7~SEQ ID NO.11所示的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB。According to a second aspect of the present invention, a primer composition for a novel coronavirus SARS-CoV-2, comprising a first primer set directed at the Orflab gene of the novel coronavirus SARS-CoV-2 and directed against the novel coronavirus The second primer set of the N gene of the virus SARS-CoV-2; the first primer set includes the outer primer F3, outer primer B3, outer primer B3, Inner primer FIP, inner primer BIP, loop primer LF and loop primer LB; the second primer set includes outer primer F3 and outer primer B3 whose nucleotide sequences are sequentially shown in SEQ ID NO.7~SEQ ID NO.11 , inner primer FIP, inner primer BIP, and loop primer LB.
根据本发明的第三个方面,一种非诊断治疗目的的新型冠状病毒SARS-CoV-2的检测方法,使用如上所述的检测试剂盒或如上所述的引物组合物,和样本混合后,进行环介导等温扩增反应。According to the third aspect of the present invention, a method for detecting the novel coronavirus SARS-CoV-2 for non-diagnostic and therapeutic purposes, using the above-mentioned detection kit or the above-mentioned primer composition, after mixing with the sample, A loop-mediated isothermal amplification reaction was performed.
在一优选的实施例中,所述扩增反应的程序为60~65℃反应18~30min。更优选地,所述 扩增反应的程序为65℃反应20min。In a preferred embodiment, the procedure of the amplification reaction is to react at 60-65°C for 18-30 minutes. More preferably, the procedure of the amplification reaction is to react at 65°C for 20 minutes.
在一优选的实施例中,使用第一扩增体系检测样本中的Orflab基因,其中:所述第一扩增体系包括所述第一引物组、dNTPs、MgCl 2、10×Isothermo Buffer、酶、20×EvaGreen Dye、模板及ddH 20。更优选地,所述模板包括含有Orflab基因靶标片段的装甲病毒。 In a preferred embodiment, the first amplification system is used to detect the Orflab gene in the sample, wherein: the first amplification system includes the first primer set, dNTPs, MgCl 2 , 10×Isothermo Buffer, enzyme, 20×EvaGreen Dye, template and ddH 2 0. More preferably, the template comprises an armored virus containing a target segment of the Orflab gene.
在一优选的实施例中使用第二扩增体系检测样本中的N基因,其中:所述第二扩增体系包括所述第二引物组、dNTPs、MgCl 2、10×Isothermo Buffer、酶、20×EvaGreen Dye、模板及ddH 20。更优选地,所述模板包括含有N基因靶标片段的装甲病毒。 In a preferred embodiment, the second amplification system is used to detect the N gene in the sample, wherein: the second amplification system includes the second primer set, dNTPs, MgCl 2 , 10×Isothermo Buffer, enzyme, 20 ×EvaGreen Dye, template and ddH 2 0. More preferably, the template comprises an armored virus containing a target segment of the N gene.
更优选地,所述第一扩增体系或第二扩增体系中,引物组合物的浓度为0.2~2μM,dNTPs的浓度为1.0~2.0mM,MgCl 2的浓度为5~10mM。 More preferably, in the first amplification system or the second amplification system, the concentration of the primer composition is 0.2-2 μM, the concentration of dNTPs is 1.0-2.0 mM, and the concentration of MgCl 2 is 5-10 mM.
更优选地,所述第一引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB的摩尔比为1:1:8:8:4:4,所述第二引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB的摩尔比为1:1:8:8:4。More preferably, the molar ratio of the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, loop primer LF and loop primer LB of the first primer set is 1:1:8:8:4:4, The molar ratio of the outer primer F3, the outer primer B3, the inner primer FIP, the inner primer BIP, and the loop primer LB of the second primer set is 1:1:8:8:4.
具体地,在检测时,分别将样本加入第一扩增体系及第二扩增体系中,分别进行环介导等温扩增,以同步检测样本中是否含有Orflab基因和N基因。Specifically, during detection, samples are respectively added to the first amplification system and the second amplification system, and loop-mediated isothermal amplification is performed respectively, so as to simultaneously detect whether the samples contain the Orflab gene and the N gene.
本发明采用以上方案,相比现有技术具有如下优点:The present invention adopts the above scheme, and has the following advantages compared with the prior art:
本发明的新型冠状病毒SARS-CoV-2的检测试剂盒及引物组合物、检测方法,基于环介导等温扩增方法进行检测,分别针对SARS-CoV-2病毒的Orflab基因和N基因的6个区域设计4条特异性引物,并加上2条或1条环引物,在60~65℃的恒温环境下进行扩增,灵敏度较好(最低检测限可达10copies/mL及50copies/mL),操作简单,用时较短;而且可以同时对SARS-CoV-2病毒的多基因位点检测,提高了检测的准确率;并且可以不依赖昂贵的专业设备,不具备专业的一般人员也可以操作,为SARS-CoV-2病毒的现场即时检测提供了可能。The detection kit, primer composition, and detection method of the novel coronavirus SARS-CoV-2 of the present invention are detected based on the loop-mediated isothermal amplification method, and are respectively aimed at 6 of the Orflab gene and the N gene of the SARS-CoV-2 virus. Design 4 specific primers for each region, add 2 or 1 loop primers, and perform amplification in a constant temperature environment of 60-65°C, with good sensitivity (the lowest detection limit can reach 10copies/mL and 50copies/mL) , the operation is simple, and the time is short; and it can detect the multi-gene loci of the SARS-CoV-2 virus at the same time, which improves the accuracy of the detection; and does not rely on expensive professional equipment, and can be operated by ordinary personnel without specialization , providing the possibility for on-site instant detection of SARS-CoV-2 virus.
附图说明Description of drawings
为了更清楚地说明本发明的技术方案,下面将对实施例描述中所需要使用的附图作简单地介绍,显而易见地,下面描述中的附图仅仅是本发明的一些实施例,对于本领域普通技术人员来讲,在不付出创造性劳动的前提下,还可以根据这些附图获得其他的附图。In order to illustrate the technical solution of the present invention more clearly, the accompanying drawings that need to be used in the description of the embodiments will be briefly introduced below. Obviously, the accompanying drawings in the following description are only some embodiments of the present invention. Ordinary technicians can also obtain other drawings based on these drawings on the premise of not paying creative work.
图1是实施例2试剂盒的SARS-CoV-2病毒Orflab基因靶标的最低检测限实验结果图;Fig. 1 is the minimum detection limit experimental result figure of the SARS-CoV-2 virus Orflab gene target of the kit of embodiment 2;
图2是实施例2试剂盒的SARS-CoV-2病毒N基因靶标的最低检测限实验结果图。Fig. 2 is the minimum detection limit experimental result graph of the SARS-CoV-2 virus N gene target of the kit of Example 2.
具体实施方式Detailed ways
下面结合附图对本发明的较佳实施例进行详细阐述,以使本发明的优点和特征能更易于被本领域的技术人员理解。在此需要说明的是,对于这些实施方式的说明用于帮助理解本发明,但并不构成对本发明的限定。The preferred embodiments of the present invention will be described in detail below in conjunction with the accompanying drawings, so that the advantages and features of the present invention can be more easily understood by those skilled in the art. It should be noted here that the descriptions of these embodiments are used to help understand the present invention, but are not intended to limit the present invention.
实施例所需的试剂和材料:引物由通用生物系统(安徽)有限公司合成;dNTP购自索莱宝生物科技有限公司;核酸染料20×EvaGreen Dye购自biotium;新冠orf1ab和N基因的假病毒由上海卡敏生物科技有限公司合成。Reagents and materials required for the examples: primers were synthesized by General Biosystems (Anhui) Co., Ltd.; dNTPs were purchased from Suo Laibao Biotechnology Co., Ltd.; nucleic acid dye 20×EvaGreen Dye was purchased from biotium; new crown orf1ab and N gene pseudovirus Synthesized by Shanghai Kamin Biotechnology Co., Ltd.
实施例1:呼吸道合胞病毒引物组合物的设计和筛选Example 1: Design and Screening of Respiratory Syncytial Virus Primer Compositions
本实施例设计和筛选基于RT-LAMP检测新冠病毒SARS-CoV-2用的引物,具体包括检测新冠病毒SARS-CoV-2的Orflab基因的RT-LAMP引物组和检测新冠病毒SARS-CoV-2的N基因的RT-LAMP引物组,具体过程描述如下。This embodiment designs and screens the primers for detecting the new coronavirus SARS-CoV-2 based on RT-LAMP, specifically including the RT-LAMP primer set for detecting the Orflab gene of the new coronavirus SARS-CoV-2 and detecting the new coronavirus SARS-CoV-2 The RT-LAMP primer set for the N gene, the specific process is described below.
通过GISAID中下载的SARS-CoV-2基因组,NCBI下载其他常见冠状病毒,并以此设计RT-LAMP引物组。具体为:病毒HCoV-229E、HCoV-OC43、HCoV-NL63、HCoV-HKU1、SARS-CoV和MERS-CoV序列,BioEdit和SnapGene序列比较分析,得到特异性的Orflab片段和N片段序。Through the SARS-CoV-2 genome downloaded in GISAID, NCBI downloaded other common coronaviruses and used them to design RT-LAMP primer sets. Specifically: Viral HCoV-229E, HCoV-OC43, HCoV-NL63, HCoV-HKU1, SARS-CoV and MERS-CoV sequences, BioEdit and SnapGene sequence comparison analysis, to obtain specific Orflab fragments and N fragment sequences.
(1)利用在线设计软件Primer ExplorerV5,对特异性Orflab基因片段和N基因片段设计RT-LAMP引物,Orflab基因片段设计出4套引物,N基因片段设计出5套引物。(1) Using the online design software Primer ExplorerV5, design RT-LAMP primers for the specific Orflab gene fragment and N gene fragment, design 4 sets of primers for the Orflab gene fragment, and design 5 sets of primers for the N gene fragment.
(2)含Orflab靶标片段的装甲病毒用ddH 20做梯度稀释,拷贝数依次为10 6copies/mL、10 5copies/mL、10 4copies/mL、10 3copies/mL。含N基因靶标片段的装甲病毒用ddH 20做梯度稀释,拷贝数依次为10 6copies/mL、10 5copies/mL、10 4copies/mL、10 3copies/mL。 (2) The armored virus containing the Orflab target fragment was serially diluted with ddH 2 0, and the copy numbers were 10 6 copies/mL, 10 5 copies/mL, 10 4 copies/mL, and 10 3 copies/mL. The armored virus containing the N gene target fragment was serially diluted with ddH 2 0, and the copy numbers were 10 6 copies/mL, 10 5 copies/mL, 10 4 copies/mL, and 10 3 copies/mL.
(3)扩增反应体系为扩增引物Mix 2.2μL,dNTPs 1.0-2.0mM,MgCl2:5~10mM,10×Isothermo Buffer 2.5μL,酶Mix 0.2μL,20X EvaGreen Dye 1μL,模板5μL,加ddH20补足至25μL,所述扩增引物反应程序为65℃反应20min。模板包括两种,针对Orflab基因的 扩增反应体系的模板为含Orflab基因靶标片段的装甲病毒,针对Orflab基因的扩增反应体系的模板为含N基因靶标片段的装甲病毒。(3) Amplification reaction system: amplification primer Mix 2.2μL, dNTPs 1.0-2.0mM, MgCl2: 5-10mM, 10×Isothermo Buffer 2.5μL, enzyme Mix 0.2μL, 20X EvaGreen Dye 1μL, template 5μL, add ddH20 to make up to 25 μL, the amplification primer reaction program is 65° C. for 20 min. The template includes two types, the template for the amplification reaction system of the Orflab gene is an armored virus containing the target fragment of the Orflab gene, and the template for the amplification reaction system of the Orflab gene is an armored virus containing the target fragment of the N gene.
Orflab基因引物信息参见表1。See Table 1 for Orflab gene primer information.
表1Table 1
Figure PCTCN2022078307-appb-000001
Figure PCTCN2022078307-appb-000001
N基因引物信息参见表2。See Table 2 for N gene primer information.
Figure PCTCN2022078307-appb-000002
Figure PCTCN2022078307-appb-000002
扩增反应结束后,根据荧光曲线是否为“S”型曲线来判断是否为阳性,具有“S”型曲线表 明检测结果为阳性,没有扩增曲线表明检测结果为阴性。扩增结果见表3。After the amplification reaction is over, judge whether it is positive according to whether the fluorescence curve is an "S" curve. An "S" curve indicates that the test result is positive, and no amplification curve indicates that the test result is negative. The amplification results are shown in Table 3.
表3 Orf1ab基因和N基因引物筛选扩增结果Table 3 Orf1ab gene and N gene primer screening amplification results
Figure PCTCN2022078307-appb-000003
Figure PCTCN2022078307-appb-000003
由表3可知,Orf1ab基因扩增效果最佳的引物是第2组引物,N基因扩增效果最佳是第3组引物。It can be seen from Table 3 that the primers with the best amplification effect of the Orf1ab gene are the primers of the second group, and the primers of the third group are the best with the amplification effect of the N gene.
实施例2:检测试剂盒Embodiment 2: detection kit
检测试剂盒包括:第一引物组、第二引物组、dNTPs、MgCl 2、10×Isothermo Buffer、酶、20×EvaGreen Dye、ddH 20。第一引物组为表1中的第2组引物,第二引物组为表2中的第3组引物,每条引物独立地封装。该试剂盒还包括用作阳性质控品的模板,包括两种,分别为含Orflab基因和N基因靶标片段的装甲病毒作为模板,由上海卡敏生物科技有限公司合成。 The detection kit includes: first primer set, second primer set, dNTPs, MgCl 2 , 10×Isothermo Buffer, enzyme, 20×EvaGreen Dye, ddH 2 0. The first primer set is the second primer set in Table 1, the second primer set is the third primer set in Table 2, and each primer is packaged independently. The kit also includes templates used as positive quality controls, including two armored viruses containing Orflab gene and N gene target fragments as templates, which were synthesized by Shanghai Kamin Biotechnology Co., Ltd.
在使用前,配制扩增反应体系,具体包括:扩增引物Mix 2.2μL,dNTPs 1.4mM,MgCl 2 8mM,10×Isothermo Buffer 2.5μL,酶Mix 0.2μL,20X EvaGreen Dye 1μL,模板5μL,加ddH20补足至25μL。其中,需配制两种扩增反应体系;第一扩增反应体系中的扩增引物Mix为针对Orflab基因的引物F3、B3、FIP、BIP、LF及LB的混合液,模板为含Orflab基因靶标片段的装甲病毒;第二扩增反应体系中的扩增引物Mix为针对N基因的引物F3、B3、FIP、BIP、LF及LB的混合液,模板为含N基因靶标片段的装甲病毒。 Before use, prepare the amplification reaction system, including: amplification primer Mix 2.2 μL, dNTPs 1.4 mM, MgCl 2 8 mM, 10×Isothermo Buffer 2.5 μL, enzyme Mix 0.2 μL, 20X EvaGreen Dye 1 μL, template 5 μL, add ddH20 Make up to 25 μL. Among them, two amplification reaction systems need to be prepared; the amplification primer Mix in the first amplification reaction system is a mixture of primers F3, B3, FIP, BIP, LF and LB for the Orflab gene, and the template is a mixture containing the Orflab gene target The fragmented armored virus; the amplification primer Mix in the second amplification reaction system is a mixture of primers F3, B3, FIP, BIP, LF and LB for the N gene, and the template is the armored virus containing the N gene target fragment.
在检测新冠病毒SARS-CoV-2的Orflab基因的第一引物组中,引物Orflab-F3、Orflab-B3、Orflab-FIP、Orf1ab-BIP、Orflab-LF和Orflab-LB的摩尔比优选为1:1:8:8:4:4。在检测新冠病毒SARS-CoV-2的N基因的第二引物组中,引物N-F3、N-B3、N-FIP、N-BIP和N-LF的摩尔比优选为1:1:8:8:4。按照以上各引物的摩尔比进行配制引物混合液。扩增引物Mix配制,将FIP、BIP、B3、F3、LF、LB溶解成100umol/L的溶液,按照F3:B3:FIP:BIP:LF:LB=1:1:8:8:4:4的比例混合,若无LF引物,用ddH20补足。In the first primer set detecting the Orflab gene of the new coronavirus SARS-CoV-2, the molar ratio of the primers Orflab-F3, Orflab-B3, Orflab-FIP, Orf1ab-BIP, Orflab-LF and Orflab-LB is preferably 1: 1:8:8:4:4. In the second primer set for detecting the N gene of the new coronavirus SARS-CoV-2, the molar ratio of the primers N-F3, N-B3, N-FIP, N-BIP and N-LF is preferably 1:1:8: 8:4. The primer mixture was prepared according to the molar ratio of the above primers. Prepare the amplification primer Mix, dissolve FIP, BIP, B3, F3, LF, and LB into a 100umol/L solution, according to F3:B3:FIP:BIP:LF:LB=1:1:8:8:4:4 If there is no LF primer, use ddH20 to make up.
该试剂盒的使用方法具体如下:The method of using the kit is as follows:
(1)样本处理:取样本(如咽拭子或口腔拭子样本)转移到含有样本裂解液的离心管中,震荡混匀,待检;(1) Sample processing: Take a sample (such as a throat swab or oral swab sample) and transfer it to a centrifuge tube containing the sample lysate, shake and mix well, and wait for inspection;
(2)在测试管1中加入第一扩增体系(20μL)及步骤(1)中的液体(5μL),在测试管2中加入第二扩增体系(20μL)及步骤(1)中的液体(5μL),在核酸检测仪中65℃条件下反应20min;(2) Add the first amplification system (20 μL) and the liquid (5 μL) in step (1) to test tube 1, add the second amplification system (20 μL) and the liquid in step (1) to test tube 2 Liquid (5 μL), react in a nucleic acid detector at 65°C for 20 minutes;
(3)结果判读:根据荧光曲线是否为“S”型曲线来判断是否含有新冠病毒,具有“S”型曲线表明检测样本中含有新冠病毒。本实施例中,如果新冠病毒Orflab基因这两个靶标一致,则按照一致结果判定;如果两个靶标一个阳性,一个阴性,则重复检测,如果检测结果仍为一个阴性,一个阳性,则按照阳性判定。(3) Interpretation of results: According to whether the fluorescence curve is an "S" curve to determine whether it contains the new coronavirus, an "S" curve indicates that the test sample contains the new coronavirus. In this example, if the two targets of the Orflab gene of the new coronavirus are consistent, it will be judged according to the consistent result; if one of the two targets is positive and the other is negative, the test will be repeated, and if the test result is still one negative and one positive, then it will be judged as positive. determination.
试剂盒的可行性Feasibility of the kit
1.最低检测限(LOD)实验1. Lower limit of detection (LOD) experiment
含Orflab靶标片段的装甲病毒、含N基因靶标片段的装甲病毒用ddH 20做梯度稀释,拷贝数依次为10 5copies/mL、10 4copies/mL、10 3copies/mL、100copies/mL、50copies/mL、10copies/mL。用实施例2的试剂盒按照实施例2记载的使用方法检测Orflab靶标模板,用实施例2的试剂盒按照实施例2记载的使用方法检测N基因靶标模板,确定检测方法对阳性核酸的最小检测量。如图1所示,新冠病毒SARS-CoV-2的Orflab基因靶标的核酸最低检测限为10copies/mL;如图2所示,新冠病毒SARS-CoV-2的N基因靶标的核酸最低检测限50copies/mL。 The armored virus containing the Orflab target fragment and the armored virus containing the N gene target fragment were serially diluted with ddH 2 0, and the copy numbers were 10 5 copies/mL, 10 4 copies/mL, 10 3 copies/mL, 100 copies/mL, 50copies/mL, 10copies/mL. Use the kit of Example 2 to detect the Orflab target template according to the method described in Example 2, use the kit of Example 2 to detect the N gene target template according to the method described in Example 2, and determine the minimum detection method for positive nucleic acids quantity. As shown in Figure 1, the minimum detection limit of the nucleic acid of the Orflab gene target of the new coronavirus SARS-CoV-2 is 10copies/mL; as shown in Figure 2, the minimum detection limit of the nucleic acid of the N gene target of the new coronavirus SARS-CoV-2 is 50copies /mL.
2.特异性实验2. Specificity experiment
(1)特异性实验病原体样本提取:以甲型流感病毒(H1N1)、乙型流感病毒(Yamagata)、呼吸道合胞病毒(A型)、腺病毒(2型)、副流感病毒(1型)、中东呼吸系统综合征冠状病毒(MERSr-CoV)、人冠状病毒HCoV-229E、人冠状病毒HCoV-HK U1、人冠状病毒HCoV-NL63、人冠状病毒HCoV-0C43、甲型流感病毒(H3N2)、甲型流感病毒(H5N1)、甲型流感病毒(H7N9)这13个病毒分别用索莱宝生物科技有限公司RNA病毒基因组提取试剂盒进行核酸RNA的纯化。(1) Extraction of specific experimental pathogen samples: Influenza A virus (H1N1), influenza B virus (Yamagata), respiratory syncytial virus (type A), adenovirus (type 2), parainfluenza virus (type 1) , Middle East Respiratory Syndrome Coronavirus (MERSr-CoV), Human Coronavirus HCoV-229E, Human Coronavirus HCoV-HK U1, Human Coronavirus HCoV-NL63, Human Coronavirus HCoV-0C43, Influenza A Virus (H3N2) 13 viruses, Influenza A virus (H5N1) and Influenza A virus (H7N9), were purified by the RNA virus genome extraction kit of Suleibao Biotechnology Co., Ltd. respectively.
(2)样本检测:分别用实施例2的试剂盒进行上述13个病毒核酸的检测,Orflab基因靶标和N基因靶标模板作为阳性对照,ddH 20作为阴性对照。 (2) Sample detection: The kits in Example 2 were used to detect the above 13 viral nucleic acids, the Orflab gene target and N gene target templates were used as positive controls, and ddH 2 0 was used as a negative control.
(3)结果分析:参见表4,甲型流感病毒(H1N1)、乙型流感病毒(Yamagata)、呼吸道合胞病毒(A型)、腺病毒(2型)、副流感病毒(1型)、中东呼吸系统综合征冠状病毒(MERSr-CoV)、人冠状病毒HCoV-229E、人冠状病毒HCoV-HK U1、人冠状病毒HCoV-NL63、人冠状病毒HCoV-0C43、甲型流感病毒(H3N2)、甲型流感病毒(H5N1)、甲型流感病毒(H7N9)均未检出,表明该试剂盒具有高特异性。(3) Analysis of results: see Table 4, Influenza A virus (H1N1), Influenza B virus (Yamagata), Respiratory syncytial virus (Type A), Adenovirus (Type 2), Parainfluenza virus (Type 1), Middle East respiratory syndrome coronavirus (MERSr-CoV), human coronavirus HCoV-229E, human coronavirus HCoV-HK U1, human coronavirus HCoV-NL63, human coronavirus HCoV-0C43, influenza A virus (H3N2), Influenza A virus (H5N1) and influenza A virus (H7N9) were not detected, indicating that the kit has high specificity.
表4特异性实验结果Table 4 specificity experimental results
Figure PCTCN2022078307-appb-000004
Figure PCTCN2022078307-appb-000004
Figure PCTCN2022078307-appb-000005
Figure PCTCN2022078307-appb-000005
“+”代表检出阳性,“-”代表检出阴性。"+" means positive, and "-" means negative.
如本说明书和权利要求书中所示,术语“包括”与“包含”仅提示包括已明确标识的步骤和元素,而这些步骤和元素不构成一个排它性的罗列,方法或者设备也可能包含其他的步骤或元素。As shown in this specification and claims, the terms "comprising" and "comprising" only suggest the inclusion of explicitly identified steps and elements, and these steps and elements do not constitute an exclusive list, and the method or device may also include other steps or elements.
单数形式的“一种”、“所述”和“该”也旨在包括多数形式,除非上下文清楚地表示其他含义。The singular forms "a", "said" and "the" are also intended to include the plural unless the context clearly dictates otherwise.
上述实施例只为说明本发明的技术构思及特点,是一种优选的实施例,其目的在于熟悉此项技术的人士能够了解本发明的内容并据以实施,并不能以此限定本发明的保护范围。凡根据本发明的原理所作的等效变换或修饰,都应涵盖在本发明的保护范围之内。The above-described embodiment is only to illustrate the technical concept and characteristics of the present invention. It is a preferred embodiment. Its purpose is that those familiar with this technology can understand the content of the present invention and implement it accordingly, and cannot limit the scope of the present invention. protected range. All equivalent changes or modifications made according to the principles of the present invention shall fall within the protection scope of the present invention.

Claims (15)

  1. 一种新型冠状病毒SARS-CoV-2的检测试剂盒,其特征在于,包括针对所述新型冠状病毒SARS-CoV-2的Orflab基因的第一引物组及针对所述新型冠状病毒SARS-CoV-2的N基因的第二引物组;所述第一引物组包括核苷酸序列依次如SEQ ID NO.1~SEQ ID NO.6所示的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB;所述第二引物组包括核苷酸序列依次如SEQ ID NO.7~SEQ ID NO.11所示的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB。A detection kit for novel coronavirus SARS-CoV-2, characterized in that it includes the first primer set for the Orflab gene of the novel coronavirus SARS-CoV-2 and the primer set for the novel coronavirus SARS-CoV- The second primer set of the N gene of 2; the first primer set includes the outer primer F3, the outer primer B3, the inner primer FIP, the inner primer F3 shown in SEQ ID NO. Primer BIP, loop primer LF and loop primer LB; the second primer set includes the outer primer F3, outer primer B3, inner primer FIP, Inner primer BIP, and loop primer LB.
  2. 根据权利要求1所述的检测试剂盒,其特征在于,每条所述引物单独封装。The detection kit according to claim 1, wherein each primer is packaged separately.
  3. 根据权利要求1所述的检测试剂盒,其特征在于,所述第一引物组的各引物组成第一引物混合液;所述第二引物组的各引物组成第二引物混合液。The detection kit according to claim 1, wherein each primer of the first primer set forms a first primer mixture; each primer of the second primer set forms a second primer mixture.
  4. 根据权利要求3所述的检测试剂盒,其特征在于,所述第一引物混合液中,所述第一引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB的摩尔比为1:1:8:8:4:4;所述第二引物混合液中,所述第二引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB的摩尔比为1:1:8:8:4。The detection kit according to claim 3, wherein in the first primer mixture, the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, and loop primer LF of the first primer set And the molar ratio of the loop primer LB is 1:1:8:8:4:4; in the second primer mixture, the outer primer F3, outer primer B3, inner primer FIP, inner primer The molar ratio of BIP and loop primer LB is 1:1:8:8:4.
  5. 根据权利要求4所述的检测试剂盒,其特征在于,所述检测试剂盒还包括以下物质中的一种或多种的组合:dNTPs、MgCl 2、10×Isothermo Buffer、酶、20×EvaGreen Dye、模板及ddH 20。 The detection kit according to claim 4, wherein the detection kit further comprises a combination of one or more of the following substances: dNTPs, MgCl 2 , 10×Isothermo Buffer, enzyme, 20×EvaGreen Dye , template and ddH 2 0.
  6. 根据权利要求5所述的检测试剂盒,其特征在于,所述模板包括含有Orflab基因靶标片段的装甲病毒及含有N基因靶标片段的装甲病毒。The detection kit according to claim 5, wherein the template comprises an armored virus containing an Orflab gene target fragment and an armored virus containing an N gene target fragment.
  7. 根据权利要求1所述的检测试剂盒,其特征在于,所述试剂盒还包括阳性质控品,所述阳性质控品包括含有Orflab基因靶标片段的装甲病毒及含有N基因靶标片段的装甲病毒。The detection kit according to claim 1, wherein the kit also includes a positive quality control product, and the positive quality control product includes an armored virus containing the Orflab gene target fragment and an armored virus containing the N gene target fragment .
  8. 根据权利要求1所述的检测试剂盒,其特征在于,所述检测试剂盒的判读标准为:若针对Orflab基因和N基因的荧光曲线均具有“S”形曲线,则判定为阳性;若针对Orflab基因和N基因的荧光曲线均无“S”形曲线,则判定为阴性;若针对Orflab基因和N基因的荧光曲线中一 者具有“S”形曲线而另一者无“S”形曲线,则重新检测,若仍然为一者具有“S”形曲线而另一者无“S”形曲线,则判定为阳性。The detection kit according to claim 1, wherein the interpretation standard of the detection kit is: if the fluorescence curves for the Orflab gene and the N gene all have an "S"-shaped curve, then it is judged as positive; Neither the fluorescence curves of the Orflab gene nor the N gene has an "S"-shaped curve, and it is judged as negative; if one of the fluorescence curves for the Orflab gene and the N gene has an "S"-shaped curve and the other has no "S"-shaped curve , then re-test, if one still has an "S"-shaped curve and the other does not have an "S"-shaped curve, it is determined to be positive.
  9. 一种新型冠状病毒SARS-CoV-2的引物组合物,其特征在于,包括针对所述新型冠状病毒SARS-CoV-2的Orflab基因的第一引物组及针对所述新型冠状病毒SARS-CoV-2的N基因的第二引物组;所述第一引物组包括核苷酸序列依次如SEQ ID NO.1~SEQ ID NO.6所示的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB;所述第二引物组包括核苷酸序列依次如SEQ ID NO.7~SEQ ID NO.11所示的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB。A primer composition for novel coronavirus SARS-CoV-2, characterized in that it includes the first primer set for the Orflab gene of the novel coronavirus SARS-CoV-2 and the primer set for the novel coronavirus SARS-CoV- The second primer set of the N gene of 2; the first primer set includes the outer primer F3, the outer primer B3, the inner primer FIP, the inner primer F3 shown in SEQ ID NO. Primer BIP, loop primer LF and loop primer LB; the second primer set includes the outer primer F3, outer primer B3, inner primer FIP, Inner primer BIP, and loop primer LB.
  10. 一种非诊断治疗目的的新型冠状病毒SARS-CoV-2的检测方法,其特征在于,使用如权利要求1至8任一项所述的检测试剂盒或如权利要求7所述的引物组合物,和样本混合后,进行环介导等温扩增反应。A method for detecting the novel coronavirus SARS-CoV-2 of non-diagnostic and therapeutic purposes, characterized in that the detection kit as claimed in any one of claims 1 to 8 or the primer composition as claimed in claim 7 are used , and after mixing with the sample, the loop-mediated isothermal amplification reaction is performed.
  11. 根据权利要求10所述的检测方法,其特征在于,所述扩增反应的程序为60~65℃反应10~30min。The detection method according to claim 10, characterized in that the procedure of the amplification reaction is to react at 60-65° C. for 10-30 minutes.
  12. 根据权利要求10所述的检测方法,其特征在于,使用第一扩增体系检测样本中的Orflab基因,使用第二扩增体系检测样本中的N基因,其中:所述第一扩增体系包括所述第一引物组、dNTPs、MgCl 2、10×Isothermo Buffer、酶、20×EvaGreen Dye、模板及ddH 20;所述第二扩增体系包括所述第二引物组、dNTPs、MgCl 2、10×Isothermo Buffer、酶、20×EvaGreen Dye、模板及ddH 20。 The detection method according to claim 10, characterized in that, use the first amplification system to detect the Orflab gene in the sample, and use the second amplification system to detect the N gene in the sample, wherein: the first amplification system includes The first primer set, dNTPs, MgCl 2 , 10×Isothermo Buffer, enzyme, 20×EvaGreen Dye, template and ddH 2 0; the second amplification system includes the second primer set, dNTPs, MgCl 2 , 10×Isothermo Buffer, enzyme, 20×EvaGreen Dye, template and ddH 2 0.
  13. 根据权利要求12所述的检测方法,其特征在于,所述第一扩增体系或第二扩增体系中,引物组合物的浓度为0.1~2.0μM,dNTPs的浓度为1.0~2.0mM,MgCl2的浓度为5~10mM。The detection method according to claim 12, characterized in that, in the first amplification system or the second amplification system, the concentration of the primer composition is 0.1-2.0 μM, the concentration of dNTPs is 1.0-2.0 mM, MgCl2 The concentration is 5 ~ 10mM.
  14. 根据权利要求12所述的检测方法,其特征在于,所述第一引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、环引物LF及环引物LB的摩尔比为1:1:8:8:4:4,所述第二引物组的外引物F3、外引物B3、内引物FIP、内引物BIP、及环引物LB的摩尔比为1:1:8:8:4。The detection method according to claim 12, wherein the molar ratio of the outer primer F3, the outer primer B3, the inner primer FIP, the inner primer BIP, the loop primer LF and the loop primer LB of the first primer set is 1: 1:8:8:4:4, the molar ratio of the outer primer F3, outer primer B3, inner primer FIP, inner primer BIP, and loop primer LB of the second primer set is 1:1:8:8:4 .
  15. 根据权利要求12所述的检测方法,其特征在于,所述第一扩增体系的模板为含有Orflab基因靶标片段的装甲病毒,所述第二扩增体系的模板为含有Orflab基因靶标片段的装甲病毒。The detection method according to claim 12, wherein the template of the first amplification system is an armored virus containing the Orflab gene target fragment, and the template of the second amplification system is an armored virus containing the Orflab gene target fragment. Virus.
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