WO2023072279A1 - Sirpa mutant and application thereof - Google Patents

Sirpa mutant and application thereof Download PDF

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WO2023072279A1
WO2023072279A1 PCT/CN2022/128520 CN2022128520W WO2023072279A1 WO 2023072279 A1 WO2023072279 A1 WO 2023072279A1 CN 2022128520 W CN2022128520 W CN 2022128520W WO 2023072279 A1 WO2023072279 A1 WO 2023072279A1
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cells
polypeptide
sirpa
cell
protein
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PCT/CN2022/128520
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French (fr)
Chinese (zh)
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胡颖莹
付雅媛
刘雷
曹卓晓
唐任宏
任晋生
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江苏先声药业有限公司
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Priority to CN202280071066.2A priority Critical patent/CN118139874A/en
Publication of WO2023072279A1 publication Critical patent/WO2023072279A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals

Definitions

  • the present invention relates to the field of biomedicine, in particular to SIRPa mutants and applications thereof.
  • CD47 is a transmembrane protein with glycosylation. After activation, it can mediate a series of processes such as cell proliferation, migration, phagocytosis, apoptosis, and immune homeostasis.
  • the ligands of CD47 include signal regulatory protein ⁇ (SIRPa), thrombospondin-1 (TSP-1) and integrins.
  • SIRPa signal regulatory protein ⁇
  • TSP-1 thrombospondin-1
  • CD47 expression is generally upregulated in a variety of malignant tumors, and high expression levels of CD47 are associated with treatment response and prognosis of cancer progression.
  • the CD47/SIRPa "don't eat me" mechanism is considered to be a potential new mechanism in tumor immunology.
  • CD47 The high expression of CD47 in tumor cells can inhibit the activation of macrophages and avoid the subsequent phagocytosis of tumor cells.
  • some immunotherapies targeting CD47 including monoclonal antibodies, fusion proteins, CAR-T cells, and ADCs, have entered the clinical research stage, and the mechanisms of action, safety, and efficacy of various products are different.
  • Drugs that are currently in the clinical research stage include a variety of CD47 monoclonal antibodies, double antibodies and SIRPa proteins. Among them, magrolimab, the CD47 antibody with the earliest development and the fastest clinical progress, was developed by Forty Seven. Phase II/III clinical trials for hematological tumors and solid tumors are now being advanced. However, it causes certain safety problems. Side effects of grade 3 or above include about 14% of anemia events and about 16% of neutropenia events. The fastest clinical progress of SIRPa protein drugs includes TTI621 and TTI622 developed by Trillium. TTI621 is a natural SIRPa IgV domain coupled to the Fc segment of human IgG1.
  • Trillium is developing TTI621 in phase I clinical trials for hematological tumors.
  • the monotherapy of NHL has a certain objective response rate.
  • Grade 3 or higher side effects include about 9% of anemia events, 20% of thrombocytopenia and about 9% of neutropenia events.
  • TTI622 is a natural SIRPa IgV domain coupled to the Fc segment of human IgG4, and the existing efficacy and safety data are superior to TTI621.
  • the combination or double antibody of various immune checkpoints and CD47 antibody, the combination or double antibody of tumor-associated antigen antibody and CD47 antibody, etc. have also entered clinical practice.
  • improving the affinity of SIRPa to CD47, improving the efficiency of blocking the interaction between CD47 and SIRPa, and promoting the release of inhibition of macrophage phagocytosis may provide new research and development ideas for the field of CD47-targeted drugs and innovative meaning.
  • the present invention is proposed.
  • the invention provides a SIRPa variant with higher target binding activity and its fusion protein, which are used to detect the existence or level of CD47, block the combination of SIRPa and CD47, and realize tumor immunotherapy.
  • a first aspect of the present invention provides a polypeptide for inhibiting the growth and/or proliferation of CD47+ disease cells, which comprises a signal regulatory protein alpha (SIRPa) mutant or a fragment thereof, the mutant relative to wild-type SIRPa at selected from residue 31, residue 37, residue 51, residue 66, residue 68 or residue 82 with at least one amino acid modification; preferably, the amino acid modification is a substitution; preferably, the wild-type SIRP ⁇ has A sequence according to any one of SEQ ID NO: 1-2.
  • SIRPa signal regulatory protein alpha
  • the SIRP ⁇ mutant comprises at least one amino acid modification selected from I31, Q37, N51, L66, K68, or T82.
  • the amino acid modification is selected from at least one of the following amino acid modifications: (1) I31M; I31Y; (2) Q37T; (3) N51G; N51R; N51A; N51E; N51F; N51T; N51W; (4) L66A; L66V; L66P; L66M; L66N; L66E; L66K; L66H; (5) K68D; K68M; K68Q; K68L; K68F; K68I; T82Q; T82G; T82H; T82L; T82I; T82K; T82M; T82P; T82R; T82V; T82W; T82Y.
  • polypeptide, relative to wild-type SIRP ⁇ having SEQ ID NO: 1, comprises an amino acid mutation selected from the group consisting of:
  • N51R; N51M or N51W mutation is included relative to wild-type SIRP ⁇ having SEQ ID NO: 2.
  • the polypeptide is fused to an immunoglobulin Fc region at its N-terminal or C-terminal; preferably, the immunoglobulin Fc region is selected from the Fc region of human IgG1, IgG2 or IgG4 or mutants thereof; More preferably, the immunoglobulin Fc region is selected from the Fc region of human IgG1 or its mutants.
  • the Fc mutant type comprises at least one of the following amino acid modifications relative to wild-type human IgG1: L234A, L235A, G237A and N297A; preferably, the amino acid modification comprises (1) N297A mutation; ( 2) L234A, L235A, and G237A mutations; or (3) L234A, L235A, G237A, and N297A mutations.
  • the Fc mutant exhibits abolished or reduced effector function, abolished or reduced C1q binding and Fc ⁇ receptor binding compared to wild type of the human IgG Fc region.
  • the polypeptide has the amino acid sequence of any one of SEQ ID Nos: 4-14, 17-51, 55-110.
  • the polypeptide has a KD for CD47 of at least 6 ⁇ 10 ⁇ 9 M.
  • the polypeptide is also linked with other functional molecules, and the other functional molecules can be selected from one or more of the following: signal peptides, protein tags, other antigen-binding molecules, interleukins, cytokines , steroids, anti-inflammatory agents, immunomodulators or cytotoxins.
  • the polypeptide is monomeric, or multimeric.
  • a second aspect of the present invention provides a chimeric antigen receptor (CAR), which at least comprises an extracellular antigen binding domain, a transmembrane domain and an intracellular signaling domain, the extracellular antigen binding domain comprising Any one of the above polypeptides.
  • CAR chimeric antigen receptor
  • the third aspect of the present invention provides an immune effector cell, which expresses the above-mentioned chimeric antigen receptor, or comprises a nucleic acid fragment encoding the chimeric antigen receptor of claim 12; preferably, the immune effector cell is selected from T cell, NK cell (natural killer cell), NKT cell (natural killer T cell), DNT cell (double negative T cell), monocyte, macrophage, dendritic cell or mast cell, said T cell is preferably From cytotoxic T cells, regulatory T cells or helper T cells; preferably, the immune effector cells are autologous immune effector cells or allogeneic immune effector cells.
  • the fourth aspect of the present invention provides a nucleic acid molecule encoding any one of the above polypeptides.
  • the fifth aspect of the present invention provides an expression vector comprising the above-mentioned nucleic acid fragment.
  • the sixth aspect of the present invention provides a host cell comprising the above-mentioned vector; preferably, the cell is a prokaryotic cell or a eukaryotic cell, such as bacteria (Escherichia coli), fungus (yeast), insect cells or mammalian cells (CHO cell line or 293T cell line).
  • the cell is a prokaryotic cell or a eukaryotic cell, such as bacteria (Escherichia coli), fungus (yeast), insect cells or mammalian cells (CHO cell line or 293T cell line).
  • the seventh aspect of the present invention provides a method for preparing any one of the above-mentioned polypeptides, which comprises culturing the host cell, and isolating the polypeptide expressed by the host cell.
  • the eighth aspect of the present invention provides a method for preparing the above-mentioned immune effector cells, which includes introducing the nucleic acid fragment encoding the above-mentioned CAR into the immune effector cells, and optionally, further including enabling the immune effector cells to express the above-mentioned CAR.
  • the ninth aspect of the present invention provides a pharmaceutical composition, comprising a pharmaceutically acceptable carrier and any of the above-mentioned polypeptides, immune effector cells, nucleic acid molecules, and expression vectors in an amount that can effectively inhibit the growth or proliferation of CD47+ disease cells , or the product prepared by any one of the above methods.
  • the tenth aspect of the present invention provides a kit comprising any one of the above-mentioned polypeptides, immune effector cells, nucleic acid molecules, expression vectors, host cells, products prepared by the method, or pharmaceutical compositions.
  • the eleventh aspect of the present invention provides any of the above-mentioned polypeptides, immune effector cells, nucleic acid molecules, expression vectors, host cells, products prepared by the method, or pharmaceutical compositions for the preparation of drugs for treating tumors expressing CD47
  • the tumor is a CD47-positive blood tumor or a CD47-positive solid tumor, and more preferably, the CD47-positive blood tumor includes leukemia, lymphoma and myeloma, and the CD47-positive solid tumor includes sarcoma.
  • the twelfth aspect of the present invention provides a method for treating tumors expressing CD47, the method comprising administering to a subject an effective amount of the polypeptide, immune effector cells, nucleic acid molecules, expression vectors, host cells, the The method prepares the obtained product and pharmaceutical composition; preferably, the tumor is a CD47-positive blood tumor or a CD47-positive solid tumor, and more preferably, the CD47-positive blood tumor includes leukemia, lymphoma and myeloma, and the CD47-positive Solid tumors include sarcomas.
  • the thirteenth aspect of the present invention provides the polypeptide, immune effector cell, nucleic acid molecule, expression vector, host cell, product prepared by the method, or pharmaceutical composition for treating a tumor expressing CD47; preferably, the The tumor is a CD47-positive blood tumor or a CD47-positive solid tumor. More preferably, the CD47-positive blood tumor includes leukemia, lymphoma and myeloma, and the CD47-positive solid tumor includes sarcoma.
  • the fourteenth aspect of the present invention provides a method for detecting the expression of CD47 in a biological sample, characterized in that the method comprises making the biological The sample is contacted with the polypeptide; preferably, the method further comprises detecting the formation of the complex indicative of the presence or expression level of CD47 in the sample.
  • compositions including A and B should be understood as the following technical scheme: a composition composed of A and B, and a composition containing other components in addition to A and B, all fall into Into the scope of the aforementioned "a composition”.
  • SIRPa refers to a cell surface type I transmembrane protein expressed on macrophages, which is a member of the SIRP/SHPS (CD172) family of the Ig superfamily.
  • SIRP ⁇ is used interchangeably with "signal regulatory protein alpha", “SIRP ⁇ ” or “SIRP-alpha”.
  • SIRP ⁇ is the receptor for CD47. In humans, the SIRP ⁇ protein is found in two main forms. The amino acid sequence of one form (variant 1 or V1) is listed as NCBI RefSeq NP_542970.1 (residues 27-504 constitute the mature form).
  • SIRP ⁇ variant 2 or V2 form
  • Another form differs by 13 amino acids and the amino acid sequence is listed in GenBank as CAA71403.1 (residues 30-504 constitute the mature form).
  • These two forms of SIRP ⁇ constitute approximately 80% of the various types of SIRP ⁇ present in humans.
  • CD47+ and CD47 positive generally refer to the characteristic of expressing CD47 protein, its fragments, or its mutants with one or more amino acid substitutions on the surface of organisms or cells.
  • CD47 positive cells may be cells overexpressing CD47. Said CD47-positive cells can usually be indicative of a disease. For example, in disease conditions, the CD47 protein density on the surface of the CD47-positive cells will exceed the CD47 protein density of the cells under normal conditions.
  • the tumor or tumor cells may be positive for CD47.
  • said tumor may be selected from the group consisting of CD47 positive hematological tumors and/or CD47 positive solid tumors.
  • CD47 protein herein generally refers to integrin-associated protein (IAP), which is a multi-transmembrane receptor belonging to the immunoglobulin superfamily.
  • IAP integrin-associated protein
  • CD47 protein can bind to membrane integrins (membrane integrins) and bind to its ligands thrombospondin-1 (TSP-1) and signal-regulatory protein alpha (SIRP ⁇ ).
  • TSP-1 membrane integrins
  • SIRP ⁇ signal-regulatory protein alpha
  • CD47 protein is widely expressed on the cell membrane surface.
  • the CD47 protein may include any variant, isoform and species homologue of human CD47.
  • mutant herein generally refers to a proteinaceous molecule having sequence homology to a protein without any mutation/modification, which retains at least a part of the therapeutic and/or biological activity of the biologically active protein.
  • a mutant protein may share at least 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% compared to a reference biologically active protein amino acid sequence identity.
  • a “mutant” may include a protein that has been intentionally modified (eg, by site-directed mutagenesis, synthesis of an encoding gene, insertion, or by chance through mutation).
  • a certain amino acid residue in an amino acid sequence "relative to" a certain amino acid residue in another amino acid sequence usually refers to the corresponding relationship of amino acid residues obtained when amino acid sequence alignment is carried out under optimized conditions .
  • the sequence alignment can be performed by means known to those skilled in the art, for example, using BLAST, BLAST-2, ALIGN, NEEDLE or Megalign (DNASTAR) software, etc. Those skilled in the art can determine appropriate parameters for alignment, including any algorithms needed to achieve optimal alignment across the full-length sequences being compared.
  • Amino acid substitutions described herein may be non-conservative substitutions.
  • the non-conservative substitution may include changing amino acid residues in the target protein or polypeptide in a non-conservative manner, such as changing amino acid residues with a certain side chain size or a certain characteristic (for example, hydrophilicity) to have different Amino acid residues with side chain size or different properties (eg, hydrophobicity).
  • the amino acid substitutions may also be conservative substitutions.
  • the conservative substitution may include changing amino acid residues in the target protein or polypeptide in a conservative manner, such as changing amino acid residues with a certain side chain size or a certain characteristic (for example, hydrophilicity) to have the same or similar Amino acid residues with side chain size or the same or similar properties (eg, still hydrophilic).
  • Such conservative substitutions generally do not substantially affect the structure or function of the resulting protein.
  • amino acid sequence variants as said fusion protein, fragments thereof, or mutants thereof with one or more amino acid substitutions may include those that do not significantly change the structure of the protein or its function (for example, blocking CD47 and its Ligand binding ability) conservative amino acid substitutions.
  • fusion protein herein generally refers to a protein obtained by fusion of two or more proteins or polypeptides. Fusion proteins can be artificially produced by recombinant DNA techniques. For example, the genes or nucleic acid molecules encoding the two or more proteins or polypeptides can be linked to each other to form a fusion gene or a fused nucleic acid molecule which can encode the fusion protein. Translation of the fusion gene may result in a single polypeptide, which may have the properties of at least one, or even each, of the two or more proteins or polypeptides prior to fusion.
  • the fusion protein includes a human SIRP ⁇ domain capable of specifically binding to the CD47 protein and an immunoglobulin Fc region, wherein the human SIRP ⁇ domain may be directly or indirectly connected to the immunoglobulin Fc region .
  • the human SIRP ⁇ domain may be located at the N- or C-terminus of the immunoglobulin Fc region.
  • the C-terminal of the human SIRP ⁇ domain can be directly or indirectly connected to the N-terminal of the immunoglobulin Fc, or the C-terminal of the immunoglobulin Fc can be directly or indirectly connected to the N-terminal of the human SIRP ⁇ domain.
  • the human SIRP ⁇ domain can be linked to the immunoglobulin Fc via a linker.
  • immunoglobulin Fc region generally refers to the base region of the Y-shaped structure of the antibody structure, also known as the Fragment crystallizable region (Fc region).
  • Fc region can consist of two identical protein fragments derived from the second and third constant domains of the two heavy chains of the antibody; the Fc region of IgM and IgE can be found in each The polypeptide chain contains three heavy chain constant domains.
  • the Fc region of IgG has highly conserved N-glycosylation sites.
  • the immunoglobulin Fc region may comprise an IgG Fc region.
  • the immunoglobulin Fc region may comprise the CH2 and CH3 regions of the heavy chain constant region. In certain embodiments, the immunoglobulin Fc region may comprise a hinge region.
  • the immunoglobulin Fc region may comprise an amino acid sequence selected from any of the following: SEQ ID NO: 3.
  • the Fc region incorporates one or more alterations, usually no more than about 5 such alterations, including amino acid substitutions that affect certain Fc properties.
  • IgG Immunoglobulin G
  • IgG is one of human immunoglobulins. According to the antigenic difference of the ⁇ chain in the IgG molecule, human IgG has four subtypes: IgG1, IgG2, IgG3 and IgG4.
  • IgG1 generally refers to a subtype with the highest proportion of IgG, which has a higher affinity with Fc receptors.
  • the IgG can be human IgG.
  • the IgG can be selected from the group consisting of IgG1 and/or IgG4.
  • the equilibrium dissociation constant KD can be measured by methods known in the art, such as surface plasmon resonance (eg, Biacore) or equilibrium dialysis. For example, refer to the method for obtaining the KD value shown in Example 4 herein.
  • antigen binding molecule is used herein in the broadest sense to refer to a molecule that specifically binds an antigen.
  • antigen binding molecules include, but are not limited to, antibodies or antibody mimetics.
  • Antibody mimic refers to an organic compound or binding domain that can specifically bind to an antigen, but has nothing to do with the structure of an antibody.
  • antibody mimics include but are not limited to affibody, affitin, affilin, designed ankyrin repeat proteins (DARPins), aptamers or Kunitz-type domain peptides.
  • chimeric antigen receptor herein refers to an artificial cell surface receptor engineered to be expressed on immune effector cells and to specifically bind an antigen, comprising at least (1) an extracellular antigen-binding domain, such as an antibody The variable heavy or light chain, (2) the transmembrane domain that anchors the CAR into immune effector cells, and (3) the intracellular signaling domain.
  • CARs are able to redirect T cells and other immune effector cells to a target of choice, such as cancer cells, in a non-MHC-restricted manner using an extracellular antigen-binding domain.
  • nucleic acid molecule includes any compound and/or substance comprising a polymer of nucleotides.
  • Each nucleotide consists of a base, especially a purine or pyrimidine base (i.e. cytosine (C), guanine (G), adenine (A), thymine (T) or uracil (U)), a sugar (i.e. deoxyribose or ribose) and phosphate groups.
  • nucleic acid molecules are described by a sequence of bases, whereby the bases represent the primary structure (linear structure) of the nucleic acid molecule. The sequence of bases is usually expressed 5' to 3'.
  • nucleic acid molecule encompasses deoxyribonucleic acid (DNA), including for example complementary DNA (cDNA) and genomic DNA, ribonucleic acid (RNA), especially messenger RNA (mRNA), synthetic forms of DNA or RNA, and synthetic forms of DNA or RNA comprising both Mixed polymers of one or more of these molecules.
  • Nucleic acid molecules can be linear or circular.
  • nucleic acid molecule includes both sense and antisense strands, as well as single- and double-stranded forms.
  • nucleic acid molecules described herein may contain naturally occurring or non-naturally occurring nucleotides.
  • Nucleic acid molecules also encompass DNA and RNA molecules suitable as vectors for direct expression of antibodies of the invention in vitro and/or in vivo, for example in a host or patient.
  • DNA eg cDNA
  • RNA eg mRNA
  • Such DNA (eg cDNA) or RNA (eg mRNA) vectors may be unmodified or modified.
  • mRNA can be chemically modified to enhance the stability of the RNA vector and/or the expression of the encoded molecule, so that the mRNA can be injected into a subject to generate antibodies in vivo (see e.g.
  • An "isolated" nucleic acid herein refers to a nucleic acid molecule that has been separated from components of its natural environment.
  • An isolated nucleic acid includes a nucleic acid molecule contained in a cell that normally contains the nucleic acid molecule, but which is present extrachromosomally or at a chromosomal location other than its natural chromosomal location.
  • expression vector refers to a nucleic acid molecule capable of amplifying another nucleic acid to which it has been linked.
  • the term includes vectors that are self-replicating nucleic acid structures as well as vectors that integrate into the genome of a host cell into which the vector has been introduced.
  • Certain vectors are capable of directing the expression of nucleic acids to which they are operably linked. Such vectors are referred to herein as "expression vectors”.
  • host cell herein refers to a cell into which exogenous nucleic acid has been introduced, including the progeny of such a cell.
  • Host cells include “transformants” and “transformed cells,” which include the primary transformed cell and progeny derived therefrom, regardless of the number of passages. Progeny may not be identical to the parental cell in nucleic acid content, but may contain mutations. Mutant progeny having the same function or biological activity as screened or selected for in the originally transformed cell are included herein.
  • the term "pharmaceutical composition” refers to a preparation that is present in a form that permits the biological activity of the active ingredients contained therein to be effective and that does not contain substances that are unacceptably toxic to the subject to which the pharmaceutical composition is administered. additional ingredients.
  • treatment refers to surgical or therapeutic treatment, the purpose of which is to prevent, slow down (reduce) an undesired physiological change or pathology, such as the progression of cancer, in the subject being treated.
  • beneficial or desired clinical outcomes include, but are not limited to, alleviation of symptoms, diminished extent of disease, stable disease state (i.e., not worsening), delay or slowing of disease progression, amelioration or palliation of disease state, and remission (whether partial response or complete response), whether detectable or undetectable.
  • Those in need of treatment include those already with the condition or disease as well as those prone to have the condition or disease or those in which the condition or disease is to be prevented.
  • slow down lessen, weaken, moderate, alleviate, etc., the meaning of eliminate, disappear, not occur, etc. is also included.
  • subject refers to an organism receiving treatment for a particular disease or condition as described herein.
  • subjects and patients include mammals, such as humans, primate (eg, monkeys) or non-primate mammals, receiving treatment for a disease or disorder.
  • an effective amount herein refers to an amount of a therapeutic agent effective to prevent or alleviate a disease condition or the progression of the disease when administered alone or in combination with another therapeutic agent to a cell, tissue or subject.
  • Effective amount also refers to an amount of a compound sufficient to relieve symptoms, eg, treat, cure, prevent or alleviate the associated medical condition, or to increase the rate of treatment, cure, prevent or alleviate such condition.
  • a therapeutically effective dose refers to that ingredient alone.
  • a therapeutically effective dose refers to the combined amounts of the active ingredients that produce a therapeutic effect, whether administered in combination, sequentially or simultaneously.
  • cancer refers to or describes the physiological condition in mammals typically characterized by unregulated cell growth. Both benign and malignant cancers are included in this definition.
  • tumor or “neoplastic” herein refers to all neoplastic cell growth and proliferation, whether malignant or benign, and to all pre-cancerous and cancerous cells and tissues.
  • cancer and “tumor” are not mutually exclusive when referred to herein.
  • CD47-positive hematological tumor generally refers to a hematological tumor overexpressing CD47, which may include various types of leukemia, lymphoma and myeloma.
  • leukemia generally refers to a cancer of the blood in which too many white blood cells, which are ineffective at fighting infection, are produced, thereby crowding out other parts of the blood, such as platelets and red blood cells. Leukemia can be classified as acute or chronic.
  • CD47-positive solid tumor generally refers to a solid tumor or a solid tumor overexpressing CD47, which can be detected by clinical examination, such as X-ray film, CT scan, B-ultrasound or palpation.
  • Major categories may include carcinoma and sarcoma.
  • Fig. 1 enzyme-linked immunoassay (ELISA) method detects the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-His;
  • Fig. 2 the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-mFc detected by enzyme-linked immunosorbent reaction (ELISA);
  • flow cytometry detects the binding activity of SIRPa-Fc fusion protein and Jurkat cell
  • enzyme-linked immunosorbent reaction (ELISA) method detects the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-mFc;
  • FIG. 8 flow cytometry experiment (FACS) detects the binding activity of SIRPa-Fc fusion protein and Jurkat cell;
  • enzyme-linked immunoassay (ELISA) method detects the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-mFc;
  • flow cytometry detects the binding activity of SIRPa-Fc fusion protein and Jurkat;
  • FIG. 13 Detection of the inhibitory effect on tumor growth mediated by SIRPa-Fc fusion protein.
  • SIRPa wild type and variants used are as follows: SIRPa V1, SIRPa V2, Mut10, Mut31, Mut33, Mut35, Mut38, Mut66, Mut67, Mut68, Mut69, Mut70, Mut71, Mut72, Mut73, Mut75, Mut80, Mut81, Mut83, Mut84, Mut86, Mut87, Mut88, Mut89, Mut90, Mut150, Mut152, Mut153, Mut156, Mut157, Mut158, Mut160, Mut162, Mut164, Mut174, and Mut178.
  • SIRPa V1 represents the IgV fragment of wild-type SIRPa V1
  • SIRPa V2 represents the IgV fragment of wild-type SIRPa V2
  • Fc represents the wild-type
  • inert Fc indicates the Fc mutant of human IgG1
  • MutXX indicates the mutant SIRPa that is mutated compared with the wild type
  • MutXX-Fc indicates the fusion protein of mutant SIRPa and Fc.
  • SIRPa V1/V2-Fc represents the fusion protein of wild-type SIRPa V1/V2 and the wild-type Fc fragment shown in SEQ ID NO:3.
  • the sequence of TTI621 refers to WO2019084692A1, as shown in SEQ ID NO:15.
  • HEK293 cells purchased from the Cell Bank of Chinese Academy of Sciences
  • the plasmid (PEI, Polysciences) constructed in Example 1 and expanded at 37°C using FreeStyle TM 293 Expression Medium (purchased from Gibco).
  • the cell culture medium was collected, centrifuged to remove cell components, and cells containing SIRPa V1-Fc, SIRPa V2-Fc, Mut10-Fc, Mut31-Fc, Mut33-Fc, Mut35-Fc, Mut38-Fc, Mut66-Fc, Mut67- Fc, Mut68-Fc, Mut69-Fc, Mut70-Fc, Mut71-Fc, Mut72-Fc, Mut73-Fc, Mut75-Fc, Mut80-Fc, Mut81-Fc, Mut83-Fc, Mut84-Fc, Mut86-Fc, Culture supernatants of Mut87-Fc, Mut88-Fc, Mut89-Fc and Mut90-Fc.
  • plasmid and transfection reagent Thermofisher, product number: A29133
  • OptiPRO SFM Thermofisher, product number: 12309019
  • ExpiCHO-S TM cells manufactured by Thermofisher, product number: A29127
  • feed was added, and the shaker temperature was adjusted to 32°C to continue culturing.
  • eluent 0.02M citric acid buffer, 0.1M glycine, 0.1M sodium chloride, pH3.0
  • a nucleic acid protein detector A280 ultraviolet absorption peak.
  • Collect the eluted protein add Tris buffer to neutralize the pH, and the buffer system after dialysis is PBS to collect the target protein. Filter it with a 0.22 ⁇ m filter and store it aseptically to obtain the purified SIRPa-Fc fusion protein.
  • the purified SIRPa-Fc fusion protein was tested and analyzed for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified SIRPa-Fc fusion protein was qualified. See Table 2 for the detection information about protein yield, protein concentration and purity.
  • ECD Extracellular Domain
  • the cell supernatant was collected; the cell components were removed by centrifugation, and the culture supernatant containing CD47 ECD-His protein was obtained.
  • the protein in the cell culture supernatant was purified with a Ni affinity chromatography column (GE, catalog number: 17371206). Equilibrate with 3-5 column volumes of equilibration buffer (PBS phosphate buffer, pH7.4) (20 ⁇ PBS buffer 500ml, Sanko, Cat. No. B548117-0500), then load the clarified culture supernatant To the Ni affinity chromatography column, control the flow rate at 5mL/min.
  • the protein A column is washed with an equilibration buffer, and the volume of the equilibration buffer is 3 to 5 times the volume of the column bed of the Ni affinity chromatography column.
  • Gradient elution was carried out with 0-500mM imidazole (Sinopharm, product number: 30104961), and the elution was monitored with a nucleic acid protein detector (A280 ultraviolet absorption peak).
  • the eluted protein was collected and dialyzed into PBS phosphate buffer at 4° C. with a dialysis card (purchased from Thermo Scientific, catalog number: 88252).
  • the human CD47 protein extracellular domain (Extracellular Domain, ECD) amino acid sequence (the specific sequence is shown in SEQ ID NO: 52) coupled with the mouse Fc sequence was cloned into the pTT5 vector.
  • the cell supernatant was collected; the cell components were removed by centrifugation, and the culture supernatant containing hCD47 ECD-mFc protein was obtained.
  • Protein A column was first equilibrated with 3-5 column volumes of equilibration buffer (PBS phosphate buffer, pH7.4) (20 ⁇ PBS buffer 500ml, Sanko, Cat. No. B548117-0500), and then the clarified culture supernatant The solution was loaded onto the protein A column, and the flow rate was controlled at 10 mL/min.
  • the volume of the equilibration buffer is 3 to 5 times the volume of the protein A column bed.
  • the protein bound to the protein A column was eluted with an eluent (0.02M citric acid buffer, pH 3.5), and the elution was monitored with a nucleic acid protein detector (A280 ultraviolet absorption peak).
  • the eluted protein was collected, and the pH was neutralized by adding Tris buffer (Sinopharm, product number: 30188336). After dialysis, the buffer system was PBS, and the target protein was collected.
  • Biotinylated hCD47 ECD-His Add 100 ⁇ L WS buffer and 200 ⁇ g hCD47 ECD-His protein to the Filtration tube according to the instructions of the Biotin Labeling kit (product number LK03, purchased from DO JINDO), mix well and centrifuge at 8000 g for 10 minutes; add 10 ⁇ L DMSO to the NH 2 -Reactive Biotin Tube and mix well Standby; after centrifugation, add 100 ⁇ L Reaction Buffer and 8 ⁇ L NH 2 -Reactive Biotin solution to the Filtration tube, mix well, place in a constant temperature incubator at 37 degrees for 10 minutes, then add 100 ⁇ L WS Buffer and centrifuge at 8000g for 10 minutes, discard the filtrate and then add 200 ⁇ L WS Buffer Centrifuge at 8000g for 10 minutes, repeat the above step once, add 100 ⁇ L WS Buffer to recover the marked hCD47 ECD-His into a new centrifuge tube, measure the
  • streptavidin streptavidin, hereinafter referred to as SA, product number S4762, purchased from Sigma
  • SA streptavidin
  • PBS PBS buffer solution containing 5% (w/w) skim milk powder
  • HRP horseradish peroxidase
  • the results show that the purified SIRPa-Fc fusion protein has excellent binding activity to hCD47 ECD-His Compared with wild-type V1 or V2, it is better than TTI621.
  • the negative control is non-related Fc fusion protein, the same below.
  • the data in the table are OD450nm values.
  • Anti-mFc (purchased from Jackson, Cat. No. 115-006-071) was first diluted with PBS to a final concentration of 2 ⁇ g/mL, then added to a 96-well ELISA plate at 50 ⁇ L per well, and incubated overnight at 4°C. The supernatant was discarded the next day, and a blocking solution, namely PBS buffer solution containing 5% (w/w) skimmed milk powder (purchased from Sangon, product number A600669-0250), was added to block at 37° C. for 2 hours. Pour off the blocking solution and wash the plate 3 times with PBST.
  • HRP horseradish peroxidase
  • the affinity with antigen was determined by multi-cycle kinetic method.
  • the Human Antibody Capture Kit purchased from cytiva, 29234600
  • the Anti-human IgG Fc antibody was immobilized on the CM5 chip (purchased from cytiva, BR100530), and according to the Amine Coupling Kit kit (purchased from cytiva, 29234600), BR100633), use HBS-EP+pH7.4 as the mobile phase, mix NHS and EDC, activate the chip for about 600s, dilute Anti-human IgG Fc to 15 ⁇ g/mL with 10mM sodium acetate pH5.0, and inject for 420s , and finally the remaining active sites were blocked with ethanolamine.
  • the affinity to the antigen was determined by a multi-cycle kinetic method, in each cycle, the SIRPa-Fc fusion protein was first captured with an Anti-human IgG Fc chip, and then a single concentration of antigen was injected to record the SIRPa-Fc fusion protein and antigen During the protein binding and dissociation process, the chip was regenerated with 3M MgCl 2 at the end.
  • the mobile phase was HBS-EP+ (10mM HEPES, 150mM NaCl, 3mM EDTA, 0.05% surfactant P20), the flow rate was 30 ⁇ L/min, and the regeneration time was 30s.
  • the temperature was 25°C; finally, according to the 1:1binding model, the data was analyzed to fit the antibody-antigen binding kinetic parameters, including the binding rate constant ka, the dissociation rate constant kd, the equilibrium dissociation constant KD, and the maximum binding signal Rmax.
  • the results are shown in Table 6.
  • Embodiment 5 Flow cytometry experiment (FACS) detects the binding activity of SIRPa-Fc fusion protein and cell
  • the results are shown in Figure 3 and Table 7.
  • the results showed that SIRPa-Fc fusion protein can bind to CD47 on the surface of Jurkat cells, and the binding activity of SIRPa-Fc fusion protein to Jurkat was better than wild-type V1 or V2, and better than TTI621.
  • the data MFI in the table is the mean fluorescence intensity value of the measured cell population.
  • Raji cells were expanded and cultured in T-75 cell culture flasks, counted, centrifuged at 1000 rpm for 5 minutes at room temperature, discarded the medium, washed twice with PBS buffer (purchased from Hyclone, product number SH30256.01), and the cells were washed with 25 ⁇ g /ml of Fc blocker (purchased from BD, Cat. No. 564220) was resuspended, and blocked at room temperature for 20 minutes. Add 1 ⁇ 10 5 cells per well, 50 ⁇ L per well into a U-bottom 96-well FACS reaction plate (purchased from Corning, Cat. No. 3795), and store at 4°C for later use.
  • PBS buffer purchased from Hyclone, product number SH30256.01
  • Fc blocker purchased from BD, Cat. No. 564220
  • the SIRPa-Fc fusion protein to be tested was diluted with PBS containing 1% (w/w) BSA (purchased from Sangon, Cat. No. A500023-0100), added to the cells at 50 ⁇ L per well, mixed, and incubated at 4° C. for 1 hour.
  • the results were detected and analyzed with a FACS instrument (FACS Canto II, purchased from BD Company). The results are shown in Figure 4 and Table 8. The results showed that SIRPa-Fc fusion protein can bind to CD47 on the surface of Raji cells, and the binding activity of SIRPa-Fc fusion protein to Raji was better than that of wild-type V1 or V2, and better than that of TTI621.
  • the data MFI in the table is the mean fluorescence intensity value of the measured cell population.
  • the human SIRPa V1 protein extracellular domain (Extracellular Domain, ECD) amino acid sequence (the gene accession number in NCBI is NP_542970.1, amino acids 31-370, the specific sequence is shown in SEQ ID NO: 53) and SIRPa V2
  • the amino acid sequence of the extracellular domain (ECD) of the protein (the gene accession number in NCBI is AAH38510.1, amino acids 31-369, the specific sequence is shown in SEQ ID NO: 54) was cloned by coupling 6 ⁇ His sequence respectively to the pTT5 vector.
  • the cell supernatant was collected; the cell components were removed by centrifugation, and culture supernatants containing hSIRPa V1 ECD-His and hSIRPa V2 ECD-His proteins were obtained respectively.
  • the protein in the cell culture supernatant was purified with a Ni affinity chromatography column (GE, catalog number: 17371206). Equilibrate with 3-5 column volumes of equilibration buffer (PBS phosphate buffer, pH7.4) (20 ⁇ PBS buffer 500ml, Sanko, Cat. No. B548117-0500), then load the clarified culture supernatant To the Ni affinity chromatography column, control the flow rate at 5mL/min.
  • the protein A column is washed with an equilibration buffer, and the volume of the equilibration buffer is 3 to 5 times the volume of the column bed of the Ni affinity chromatography column.
  • Gradient elution was carried out with 0-500mM imidazole (Sinopharm, product number: 30104961), and the elution was monitored with a nucleic acid protein detector (A280 ultraviolet absorption peak).
  • the eluted protein was collected, and the protein was dialyzed into PBS phosphate buffer at 4° C. with a dialysis card (purchased from Thermo Scientific, catalog number: 88252).
  • the purified hSIRPa V1 ECD-His and hSIRPa V2 ECD-His proteins were obtained by sterile filtration with a 0.22 ⁇ m filter (Millipore, product number SLGVR13SL) and aseptically stored.
  • the purified hSIRPa V1 ECD-His and hSIRPa V2 ECD-His were tested and analyzed for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified protein was qualified.
  • the detection information about protein yield, protein concentration and purity is shown in Table 9.
  • the results are shown in Figure 5 and Table 10, SIRPa-Fc fusion protein can effectively block the binding activity of Raji and SIRPa V1, and the blocking activity is better than that of TTI621 or wild type.
  • the data MFI in the table is the mean fluorescence intensity value of the measured cell population.
  • each library contained a combination of single-point amino acid mutations and multiple-point mutations targeting key mutation sites.
  • the total number of theoretical mutations 4.7 ⁇ 10 8
  • the total library capacity of the construction is >3.8 ⁇ 10 9 .
  • the nucleic acid fragment encoding the mutant was cloned into the pTT5 vector with Fc tag, and the plasmid was prepared according to the established standard molecular biology method.
  • the SIRP ⁇ variants used were as follows: Mut113, Mut114 and Mut117.
  • the specific sequence information of the aforementioned fusion protein and each element is shown in Table 12, wherein "MutXX-Fc" indicates a fusion protein of mutant SIRPa and Fc.
  • the Expi293F system was used to express the mutant protein, and the purified SIRPa-Fc fusion protein was tested for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified SIRPa-Fc fusion protein was qualified. See Table 13 for the detection information about protein yield, protein concentration and purity.
  • SIRPa-Fc fusion protein ka(1/Ms) kd(1/s) KD(M) Mut88-Fc 1.11E+06 9.92E-04 8.97E-10 Mut113-Fc 9.47E+05 2.16E-04 2.28E-10 Mut114-Fc 1.25E+06 2.53E-04 2.03E-10 Mut117-Fc 1.35E+06 4.39E-04 3.25E-10 SIRPa V1-Fc 1.76E+05 7.64E-04 4.34E-09 TTI621 2.50E+05 1.19E-03 4.76E-09
  • FACS flow cytometry
  • PBMCs were taken out from liquid nitrogen, they were thawed in a water bath at 37°C. PBMCs were resuspended in EasySep TM Buffer (purchased from Stemcell, Cat. No. 20144), centrifuged at 300 ⁇ g for 5 minutes, and the supernatant was discarded. Monocytes were enriched with a monocyte sorting kit (purchased from Miltenyi Biotec, product number 130-096-537), and induced to differentiate with rhM-CSF (purchased from R&D systems, product number 216-MC-100). The medium was changed every two days, and the macrophages were collected on the seventh day for use.
  • EasySep TM Buffer purchased from Stemcell, Cat. No. 20144
  • Monocytes were enriched with a monocyte sorting kit (purchased from Miltenyi Biotec, product number 130-096-537), and induced to differentiate with rhM-CSF (purchased from R&D systems, product number
  • PI purchased from Thermo Fisher, Cat. No. P3566
  • flow detection FACS Canto Plus, purchased from BD Company
  • the results are shown in Figures 11A-11B and Table 22.
  • the formula for calculating the phagocytosis ratio of the data in the table is: CellTrace TM Violet+CellTrace TM Far Red+/CellTrace TM Far Red+. According to the results, SIRPa-Fc fusion protein can effectively mediate macrophage phagocytosis of Raji cells, and the phagocytosis level is better than that mediated by TTI621.
  • SIRPa-Fc fusion protein single-use group mice were intraperitoneally injected with 30 mg/kg on days 0, 7, and 14 after grouping;
  • Trastuzumab antibody single-use group mice were intraperitoneally injected with 10 mg on days 0, 3, 7, and 14 after grouping /kg (group 1), or intraperitoneal injection of 5 mg/kg (group 2) on the 0th, 7th, and 14th day after grouping;
  • SIRPa-Fc fusion protein and Trastuzumab antibody combination group according to the respective doses of the above two drugs The way of medicine is combined with administration. The mice were observed daily and their body weight was recorded, and the inoculated tumor volume was measured 2-3 times a week.
  • TGI% (1-TVi/TVvi) ⁇ 100%
  • TVi is the average tumor volume of mice in the administration group on specific days
  • TVvi is the specific days The average tumor volume of mice in the control group.

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Abstract

Provided is a high affinity SIRPa polypeptide, comprising at least one amino acid change relative to a wild-type protein; and having an increased affinity for CD47 relative to the wild-type protein. Also provided are a nucleic acid molecule encoding the SIRPa polypeptide and a vector expressing the polypeptide. Further provided are a pharmaceutical composition and a method for treating tumors expressing CD47.

Description

SIRPa突变体及其应用SIRPa Mutants and Their Applications
相关申请的交叉引用Cross References to Related Applications
本申请要求以下2件中国发明专利申请的权益和优先权,在此将它们的全部内容以援引的方式整体并入本文中:2021年11月1日向中国国家知识产权局提交的第202111283381.5号专利申请;以及2022年7月8日向中国国家知识产权局提交的第202210800901.3号专利申请。This application claims the benefit and priority of the following 2 Chinese invention patent applications, the entire contents of which are hereby incorporated by reference in their entirety: Patent No. 202111283381.5 filed with the State Intellectual Property Office of China on November 1, 2021 application; and Patent Application No. 202210800901.3 filed with the State Intellectual Property Office of China on July 8, 2022.
技术领域technical field
本发明涉及生物医药领域,具体而言,涉及SIRPa突变体及其应用。The present invention relates to the field of biomedicine, in particular to SIRPa mutants and applications thereof.
背景技术Background technique
CD47是一种具有糖基化的跨膜蛋白,激活后可以介导细胞增殖、迁移、吞噬以及细胞凋亡,免疫稳态等一系列过程。CD47的配体包括信号调节蛋白(Signal regulatory proteinα,SIRPa)、血小板反应蛋白-1(TSP-1)和整合素。CD47在多种恶性肿瘤中表达普遍上调,CD47高表达水平与癌症恶化的治疗反应和预后相关。CD47/SIRPa“别吃我”机制被认为是肿瘤免疫学中一个具有潜力的新机制。CD47在肿瘤细胞的高表达能够抑制巨噬细胞的活化及避免后续对肿瘤细胞的吞噬作用。目前,一些针对CD47的免疫疗法,包括单克隆抗体、融合蛋白、CAR-T细胞、ADC都已进入临床研究阶段,多种产品的作用机制、安全性和疗效各有不同。CD47 is a transmembrane protein with glycosylation. After activation, it can mediate a series of processes such as cell proliferation, migration, phagocytosis, apoptosis, and immune homeostasis. The ligands of CD47 include signal regulatory protein α (SIRPa), thrombospondin-1 (TSP-1) and integrins. CD47 expression is generally upregulated in a variety of malignant tumors, and high expression levels of CD47 are associated with treatment response and prognosis of cancer progression. The CD47/SIRPa "don't eat me" mechanism is considered to be a potential new mechanism in tumor immunology. The high expression of CD47 in tumor cells can inhibit the activation of macrophages and avoid the subsequent phagocytosis of tumor cells. At present, some immunotherapies targeting CD47, including monoclonal antibodies, fusion proteins, CAR-T cells, and ADCs, have entered the clinical research stage, and the mechanisms of action, safety, and efficacy of various products are different.
现在已进行临床研究阶段的药物包括多种CD47单抗、双抗及SIRPa蛋白。其中开发最早,临床进展最快的CD47抗体magrolimab为Forty Seven公司开发。现正在推进针对血液瘤和实体瘤的临床II/III期试验。但其引起一定的安全性问题,三级以上副作用包括14%左右的贫血事件,及16%左右的中性粒细胞减少事件。SIRPa蛋白类药物临床进展最快的包括Trillium公司开发的TTI621、TTI622两款药物。TTI621为天然的SIRPa IgV结构域偶联人IgG1的Fc段,Trillium公司正在开发TTI621针对血液瘤的临床I期试验,单药治疗NHL有一定客观反应率。三级以上副作用包括9%左右的贫血事件,20%的血小板减少症及9%左右的中性粒细胞减少事件。TTI622为天然的SIRPa IgV结构域偶联人IgG4的Fc段,现有疗效及安全性数据优于TTI621。除此之外,多款免疫检查点与CD47抗体的联用或双抗,肿瘤相关抗原抗体与CD47抗体的联用或双抗等也已陆续进入临床。Drugs that are currently in the clinical research stage include a variety of CD47 monoclonal antibodies, double antibodies and SIRPa proteins. Among them, magrolimab, the CD47 antibody with the earliest development and the fastest clinical progress, was developed by Forty Seven. Phase II/III clinical trials for hematological tumors and solid tumors are now being advanced. However, it causes certain safety problems. Side effects of grade 3 or above include about 14% of anemia events and about 16% of neutropenia events. The fastest clinical progress of SIRPa protein drugs includes TTI621 and TTI622 developed by Trillium. TTI621 is a natural SIRPa IgV domain coupled to the Fc segment of human IgG1. Trillium is developing TTI621 in phase I clinical trials for hematological tumors. The monotherapy of NHL has a certain objective response rate. Grade 3 or higher side effects include about 9% of anemia events, 20% of thrombocytopenia and about 9% of neutropenia events. TTI622 is a natural SIRPa IgV domain coupled to the Fc segment of human IgG4, and the existing efficacy and safety data are superior to TTI621. In addition, the combination or double antibody of various immune checkpoints and CD47 antibody, the combination or double antibody of tumor-associated antigen antibody and CD47 antibody, etc. have also entered clinical practice.
发明内容Contents of the invention
除上述双抗联用机制外,提高SIRPa对CD47的亲和力,提高阻断CD47与SIRPa相互作用的效率,促进解除对巨噬细胞吞噬功能的抑制,可能对CD47靶向药物领域提供新的研发思路和创新意义。有鉴于此,特提出本发明。In addition to the above-mentioned dual-antibody combination mechanism, improving the affinity of SIRPa to CD47, improving the efficiency of blocking the interaction between CD47 and SIRPa, and promoting the release of inhibition of macrophage phagocytosis may provide new research and development ideas for the field of CD47-targeted drugs and innovative meaning. In view of this, the present invention is proposed.
本发明提供一种具有更高靶点结合活性的SIRPa变体及其融合蛋白,用于检测CD47的存在或水平,阻断SIRPa与CD47的结合,实现肿瘤的免疫治疗。The invention provides a SIRPa variant with higher target binding activity and its fusion protein, which are used to detect the existence or level of CD47, block the combination of SIRPa and CD47, and realize tumor immunotherapy.
本发明的第一方面提供了一种用于抑制CD47+疾病细胞的生长和/或增殖的多肽,其包含信号调节蛋白a(SIRPa)突变体或其片段,所述突变体相对于野生型SIRPa在选自残基 31、残基37、残基51、残基66、残基68或残基82具有至少一个氨基酸修饰;优选地,所述氨基酸修饰为取代;优选地,所述野生型SIRPa具有根据SEQ ID NO:1-2中任一个的序列。A first aspect of the present invention provides a polypeptide for inhibiting the growth and/or proliferation of CD47+ disease cells, which comprises a signal regulatory protein alpha (SIRPa) mutant or a fragment thereof, the mutant relative to wild-type SIRPa at selected from residue 31, residue 37, residue 51, residue 66, residue 68 or residue 82 with at least one amino acid modification; preferably, the amino acid modification is a substitution; preferably, the wild-type SIRPα has A sequence according to any one of SEQ ID NO: 1-2.
在一些实施例中,所述SIRPa突变体包含选自I31、Q37、N51、L66、K68或T82的至少一个氨基酸修饰。In some embodiments, the SIRPα mutant comprises at least one amino acid modification selected from I31, Q37, N51, L66, K68, or T82.
在一些实施例中,所述氨基酸修饰选自下列至少一个氨基酸修饰:(1)I31M;I31Y;(2)Q37T;(3)N51G;N51R;N51A;N51E;N51F;N51K;N51L;N51M;N51Q;N51T;N51W;(4)L66A;L66V;L66P;L66M;L66N;L66E;L66K;L66H;(5)K68D;K68M;K68Q;K68L;K68F;K68I;或(6)T82F;T82D;T82N;T82E;T82Q;T82G;T82H;T82L;T82I;T82K;T82M;T82P;T82R;T82V;T82W;T82Y。In some embodiments, the amino acid modification is selected from at least one of the following amino acid modifications: (1) I31M; I31Y; (2) Q37T; (3) N51G; N51R; N51A; N51E; N51F; N51T; N51W; (4) L66A; L66V; L66P; L66M; L66N; L66E; L66K; L66H; (5) K68D; K68M; K68Q; K68L; K68F; K68I; T82Q; T82G; T82H; T82L; T82I; T82K; T82M; T82P; T82R; T82V; T82W; T82Y.
在一些实施例中,所述多肽,相对于具有SEQ ID NO:1的野生型SIRPa,包含选自下列组的氨基酸突变:In some embodiments, the polypeptide, relative to wild-type SIRPα having SEQ ID NO: 1, comprises an amino acid mutation selected from the group consisting of:
(1)N51G;(2)N51R;(3)I31M;(4)I31Y;(5)I31M;N51G;(6)I31M;N51R;(7)I31Y;N51G;(8)I31Y;N51R;(9)Q37T;N51G;(10)Q37T;N51R;(11)I31Y;N51R;L66A;(12)I31Y;N51R;L66V;(13)I31Y;N51R;L66P;(14)I31Y;N51R;L66M;(15)I31Y;N51R;L66N;(16)I31Y;N51R;L66E;(17)I31Y;N51R;L66K;(18)I31Y;N51R;L66H;(19)N51A;(20)N51E;(21)N51F;(22)N51K;(23)N51L;(24)N51M;(25)N51Q;(26)N51T;(27)N51W;(28)I31M;N51R;L66N;K68D;(29)I31M;N51R;L66M;K68M;(30)I31Y;N51R;L66N;K68D;(31)I31M;N51R;L66N;K68Q;(32)I31M;N51R;L66N;K68L;(33)I31Y;N51R;L66N;K68F;(34)I31M;N51R;L66N;K68I;(35)I31Y;N51R;L66N;T82F;(36)I31Y;N51R;L66N;T82D;(37)I31Y;N51R;L66N;T82N;(38)I31Y;N51R;L66N;T82E;(39)I31Y;N51R;L66N;T82Q;(40)I31Y;N51R;L66N;T82G;(41)I31Y;N51R;L66N;T82H;(42)I31Y;N51R;L66N;T82L;(43)I31Y;N51R;L66N;T82I;(44)I31Y;N51R;L66N;T82K;(45)I31Y;N51R;L66N;T82M;(46)I31Y;N51R;L66N;T82P;(47)I31Y;N51R;L66N;T82R;(48)I31Y;N51R;L66N;T82V;(49)I31Y;N51R;L66N;T82W;(50)I31Y;N51R;L66N;T82Y;(51)I31M;N51R;L66N;K68Q;T82G;(52)I31M;N51R;L66N;K68Q;T82H;(53)I31M;N51R;L66N;K68Q;T82L;(54)I31M;N51R;L66N;K68Q;T82V;(55)I31M;N51R;L66N;K68L;T82G;(56)I31M;N51R;L66N;K68L;T82H;(57)I31M;N51R;L66N;K68L;T82L;(58)I31M;N51R;L66N;K68L;T82V;(59)I31M;N51R;L66N;K68I;T82G;(60)I31M;N51R;L66N;K68I;T82H;(61)I31M;N51R;L66N;K68I;T82L;(62)I31M;N51R;L66N;K68I;T82V。(1) N51G; (2) N51R; (3) I31M; (4) I31Y; (5) I31M; N51G; (6) I31M; N51R; (7) I31Y; N51G; (8) I31Y; )Q37T; N51G; (10) Q37T; N51R; (11) I31Y; N51R; L66A; (12) I31Y; )I31Y; N51R; L66N; (16) I31Y; N51R; L66E; (17) I31Y; N51R; L66K; (18) I31Y; 22) N51K; (23) N51L; (24) N51M; (25) N51Q; (26) N51T; (27) N51W; (28) I31M; N51R; L66N; K68D; (29) I31M; (30) I31Y; N51R; L66N; K68D; (31) I31M; N51R; L66N; K68Q; (32) I31M; N51R; L66N; K68I; (35) I31Y; N51R; L66N; T82F; (36) I31Y; (39) I31Y; N51R; L66N; T82Q; (40) I31Y; N51R; L66N; T82G; (41) I31Y; T82M; (46) I31Y; N51R; L66N; T82P; (47) I31Y; N51R; L66N; T82R; ( 48) I31Y; N51R; L66N; T82V; (49) I31Y; N51R; L66N; T82W; (50) I31Y; N51R; L66N; K68Q; T82H; (53) I31M; N51R; L66N; K68Q; T82L; (54) I31M; I31M; N51R; L66N; K68L; T82H; (57) I31M; N51R; L66N; K68L; T82L; (58) I31M; 60) I31M; N51R; L66N; K68I; T82H; (61) I31M; N51R; L66N; K68I; T82L; (62) I31M;
或,相对于具有SEQ ID NO:2的野生型SIRPa,包含N51R;N51M或N51W突变。Alternatively, a N51R; N51M or N51W mutation is included relative to wild-type SIRPα having SEQ ID NO: 2.
在一些实施例中,所述多肽在其N端或C端与免疫球蛋白Fc区融合;优选的,所述免疫球蛋白Fc区选自人IgG1、IgG2或IgG4的Fc区或其突变型;更优选的,所述免疫球蛋白Fc区选自人IgG1的Fc区或其突变型。In some embodiments, the polypeptide is fused to an immunoglobulin Fc region at its N-terminal or C-terminal; preferably, the immunoglobulin Fc region is selected from the Fc region of human IgG1, IgG2 or IgG4 or mutants thereof; More preferably, the immunoglobulin Fc region is selected from the Fc region of human IgG1 or its mutants.
在一些实施例中,所述Fc突变型包含相对于野生型人IgG1的以下氨基酸修饰中的至 少一个:L234A、L235A、G237A和N297A;优选的,所述氨基酸修饰包含(1)N297A突变;(2)L234A、L235A以及G237A突变;或(3)L234A、L235A、G237A以及N297A突变。In some embodiments, the Fc mutant type comprises at least one of the following amino acid modifications relative to wild-type human IgG1: L234A, L235A, G237A and N297A; preferably, the amino acid modification comprises (1) N297A mutation; ( 2) L234A, L235A, and G237A mutations; or (3) L234A, L235A, G237A, and N297A mutations.
在一些实施例中,所述Fc突变型与人IgG Fc区的野生型相比展现消除或减少的效应功能,消除或降低的C1q结合和Fcγ受体结合。In some embodiments, the Fc mutant exhibits abolished or reduced effector function, abolished or reduced C1q binding and Fcγ receptor binding compared to wild type of the human IgG Fc region.
在一些实施例中,所述多肽具有SEQ ID NO:4-14,17-51,55-110中任一个的氨基酸序列。In some embodiments, the polypeptide has the amino acid sequence of any one of SEQ ID NOs: 4-14, 17-51, 55-110.
在一些实施例中,所述多肽具有至少6×10 -9M的针对CD47的KD。 In some embodiments, the polypeptide has a KD for CD47 of at least 6×10 −9 M.
在一些实施例中,所述多肽还连接有其他功能性分子,所述其他功能性分子可选自以下一种或多种:信号肽、蛋白标签、其他抗原结合分子、白细胞介素、细胞因子、类固醇、抗炎剂、免疫调节剂或细胞毒素。In some embodiments, the polypeptide is also linked with other functional molecules, and the other functional molecules can be selected from one or more of the following: signal peptides, protein tags, other antigen-binding molecules, interleukins, cytokines , steroids, anti-inflammatory agents, immunomodulators or cytotoxins.
在一些实施例中,所述多肽是单体的,或多聚体的。In some embodiments, the polypeptide is monomeric, or multimeric.
本发明的第二方面提供了一种嵌合抗原受体(CAR),其至少包含细胞外抗原结合结构域、跨膜结构域和胞内信号传导结构域,所述细胞外抗原结合结构域包含上述任一种多肽。A second aspect of the present invention provides a chimeric antigen receptor (CAR), which at least comprises an extracellular antigen binding domain, a transmembrane domain and an intracellular signaling domain, the extracellular antigen binding domain comprising Any one of the above polypeptides.
本发明的第三方面提供了一种免疫效应细胞,其表达上述嵌合抗原受体,或包含编码权利要求12所述嵌合抗原受体的核酸片段;优选地,所述免疫效应细胞选自T细胞、NK细胞(natural killer cell)、NKT细胞(natural killer T cell)、DNT细胞(double negative T cell)、单核细胞、巨噬细胞、树突状细胞或肥大细胞,所述T细胞优选自细胞毒性T细胞、调节性T细胞或辅助性T细胞;优选地,所述免疫效应细胞为自体免疫效应细胞或同种异体免疫效应细胞。The third aspect of the present invention provides an immune effector cell, which expresses the above-mentioned chimeric antigen receptor, or comprises a nucleic acid fragment encoding the chimeric antigen receptor of claim 12; preferably, the immune effector cell is selected from T cell, NK cell (natural killer cell), NKT cell (natural killer T cell), DNT cell (double negative T cell), monocyte, macrophage, dendritic cell or mast cell, said T cell is preferably From cytotoxic T cells, regulatory T cells or helper T cells; preferably, the immune effector cells are autologous immune effector cells or allogeneic immune effector cells.
本发明的第四方面提供了一种核酸分子,其编码上述任一种多肽。The fourth aspect of the present invention provides a nucleic acid molecule encoding any one of the above polypeptides.
本发明的第五方面提供了一种表达载体,其包含上述核酸片段。The fifth aspect of the present invention provides an expression vector comprising the above-mentioned nucleic acid fragment.
本发明的第六方面提供了一种宿主细胞,其包含上述载体;优选地,所述细胞为原核细胞或真核细胞,例如细菌(大肠杆菌)、真菌(酵母)、昆虫细胞或哺乳动物细胞(CHO细胞系或293T细胞系)。The sixth aspect of the present invention provides a host cell comprising the above-mentioned vector; preferably, the cell is a prokaryotic cell or a eukaryotic cell, such as bacteria (Escherichia coli), fungus (yeast), insect cells or mammalian cells (CHO cell line or 293T cell line).
本发明的第七方面提供了一种制备上述任一种多肽的方法,其包括培养所述宿主细胞,以及分离所述宿主细胞表达的多肽。The seventh aspect of the present invention provides a method for preparing any one of the above-mentioned polypeptides, which comprises culturing the host cell, and isolating the polypeptide expressed by the host cell.
本发明的第八方面提供了一种制备上述免疫效应细胞的方法,其包括将编码上述CAR的核酸片段导入所述免疫效应细胞,可选地,还包括启动所述免疫效应细胞表达上述CAR。The eighth aspect of the present invention provides a method for preparing the above-mentioned immune effector cells, which includes introducing the nucleic acid fragment encoding the above-mentioned CAR into the immune effector cells, and optionally, further including enabling the immune effector cells to express the above-mentioned CAR.
本发明的第九方面提供了一种药物组合物,包含可药用的载体和能够有效地抑制CD47+疾病细胞的生长或增殖的量的上述任一种多肽,免疫效应细胞,核酸分子,表达载体,或上述任一项方法制备获得的产品。The ninth aspect of the present invention provides a pharmaceutical composition, comprising a pharmaceutically acceptable carrier and any of the above-mentioned polypeptides, immune effector cells, nucleic acid molecules, and expression vectors in an amount that can effectively inhibit the growth or proliferation of CD47+ disease cells , or the product prepared by any one of the above methods.
本发明的第十方面提供了一种试剂盒,其包含上述任一种多肽,免疫效应细胞,核酸分子,表达载体,宿主细胞,所述方法制备获得的产品,或药物组合物。The tenth aspect of the present invention provides a kit comprising any one of the above-mentioned polypeptides, immune effector cells, nucleic acid molecules, expression vectors, host cells, products prepared by the method, or pharmaceutical compositions.
本发明的第十一方面提供了上述任一种多肽,免疫效应细胞,核酸分子,表达载体, 宿主细胞,所述方法制备获得的产品,或药物组合物用于制备治疗表达CD47的肿瘤的药物的用途;优选地,所述肿瘤是CD47阳性血液肿瘤或CD47阳性实体瘤,再优选的,所述CD47阳性血液肿瘤包括白血病、淋巴瘤和骨髓瘤,所述CD47阳性实体瘤包括肉瘤。The eleventh aspect of the present invention provides any of the above-mentioned polypeptides, immune effector cells, nucleic acid molecules, expression vectors, host cells, products prepared by the method, or pharmaceutical compositions for the preparation of drugs for treating tumors expressing CD47 Preferably, the tumor is a CD47-positive blood tumor or a CD47-positive solid tumor, and more preferably, the CD47-positive blood tumor includes leukemia, lymphoma and myeloma, and the CD47-positive solid tumor includes sarcoma.
本发明的第十二方面提供了一种治疗表达CD47的肿瘤的方法,所述方法包括向受试者施用有效量的所述多肽,免疫效应细胞,核酸分子,表达载体,宿主细胞,所述方法制备获得的产品,药物组合物;优选地,所述肿瘤是CD47阳性血液肿瘤或CD47阳性实体瘤,再优选的,所述CD47阳性血液肿瘤包括白血病、淋巴瘤和骨髓瘤,所述CD47阳性实体瘤包括肉瘤。The twelfth aspect of the present invention provides a method for treating tumors expressing CD47, the method comprising administering to a subject an effective amount of the polypeptide, immune effector cells, nucleic acid molecules, expression vectors, host cells, the The method prepares the obtained product and pharmaceutical composition; preferably, the tumor is a CD47-positive blood tumor or a CD47-positive solid tumor, and more preferably, the CD47-positive blood tumor includes leukemia, lymphoma and myeloma, and the CD47-positive Solid tumors include sarcomas.
本发明的第十三方面提供了所述多肽,免疫效应细胞,核酸分子,表达载体,宿主细胞,所述方法制备获得的产品,或药物组合物用于治疗表达CD47的肿瘤;优选地,所述肿瘤是CD47阳性血液肿瘤或CD47阳性实体瘤,再优选的,所述CD47阳性血液肿瘤包括白血病、淋巴瘤和骨髓瘤,所述CD47阳性实体瘤包括肉瘤。The thirteenth aspect of the present invention provides the polypeptide, immune effector cell, nucleic acid molecule, expression vector, host cell, product prepared by the method, or pharmaceutical composition for treating a tumor expressing CD47; preferably, the The tumor is a CD47-positive blood tumor or a CD47-positive solid tumor. More preferably, the CD47-positive blood tumor includes leukemia, lymphoma and myeloma, and the CD47-positive solid tumor includes sarcoma.
本发明的第十四方面提供了一种检测生物学样品中CD47表达的方法,其特征在于,所述方法包括在所述多肽与CD47之间能够形成复合物的条件下,使所述生物学样品与所述多肽接触;优选地,所述方法还包括检测所述复合物的形成,指示样品中CD47的存在或表达水平。The fourteenth aspect of the present invention provides a method for detecting the expression of CD47 in a biological sample, characterized in that the method comprises making the biological The sample is contacted with the polypeptide; preferably, the method further comprises detecting the formation of the complex indicative of the presence or expression level of CD47 in the sample.
术语定义和说明Definitions and Explanations of Terms
除非本发明另外定义,与本发明相关的科学和技术术语应具有本领域普通技术人员所理解的含义。Unless otherwise defined herein, scientific and technical terms related to the present invention shall have the meanings understood by those of ordinary skill in the art.
此外,除非本文另有说明,本文单数形式的术语应包括复数形式,复数形式的术语应包括单数形式。更具体地,如在本说明书和所附权利要求中所使用的,除非另外明确指出,否则单数形式“一种”和“这种”包括复数指示物。Also, unless otherwise specified herein, terms in the singular shall include pluralities, and terms in the plural shall include the singular, unless otherwise specified herein. More specifically, as used in this specification and the appended claims, the singular forms "a", "an" and "the" include plural referents unless expressly stated otherwise.
本文术语“包括”、“包含”和“具有”之间可互换使用,旨在表示方案的包含性,意味着所述方案可存在除所列出的元素之外的其他元素。同时应当理解,在本文中使用“包括”、“包含”和“具有”描述,也提供“由……组成”方案。示例性地,“一种组合物,包括A和B”,应当理解为以下技术方案:由A和B组成的组合物,以及除A和B外,还含有其他组分的组合物,均落入前述“一种组合物”的范围内。The terms "comprising", "including" and "having" are used interchangeably herein and are intended to indicate the inclusiveness of the scheme, meaning that the scheme may have other elements besides the listed elements. At the same time, it should be understood that the terms "comprising", "comprising" and "having" are used herein to also provide "consisting of". Exemplarily, "a composition including A and B" should be understood as the following technical scheme: a composition composed of A and B, and a composition containing other components in addition to A and B, all fall into Into the scope of the aforementioned "a composition".
本文术语“和/或”在本文使用时,包括“和”、“或”和“由所属术语链接的要素的全部或任何其他组合”的含义。The term "and/or" herein, when used herein, includes the meanings of "and", "or" and "all or any other combination of the elements linked by the term".
本文术语“SIRPa”是指在巨噬细胞上表达的细胞表面I型跨膜蛋白,它是Ig超家族中SIRP/SHPS(CD172)家族的成员。术语“SIRPa”可以与“信号调节蛋白a”、“SIRPα”或“SIRP-alpha”互换使用。SIRPa是CD47的受体。在人类中,发现SIRPa蛋白主要有两种形式。一种形式(变体1或V1型)的氨基酸序列作为NCBI RefSeq NP_542970.1列出(残基27-504构成成熟型)。另一种形式(变体2或V2型)有13个氨基酸不同并且氨基酸序列在GenBank中作为CAA71403.1列出(残基30-504构成成熟型)。这两种形式的SIRPa构成了存在于人类中的大约80%的各种类型的SIRPa。The term "SIRPa" herein refers to a cell surface type I transmembrane protein expressed on macrophages, which is a member of the SIRP/SHPS (CD172) family of the Ig superfamily. The term "SIRPα" is used interchangeably with "signal regulatory protein alpha", "SIRPα" or "SIRP-alpha". SIRPα is the receptor for CD47. In humans, the SIRPα protein is found in two main forms. The amino acid sequence of one form (variant 1 or V1) is listed as NCBI RefSeq NP_542970.1 (residues 27-504 constitute the mature form). Another form (variant 2 or V2 form) differs by 13 amino acids and the amino acid sequence is listed in GenBank as CAA71403.1 (residues 30-504 constitute the mature form). These two forms of SIRPα constitute approximately 80% of the various types of SIRPα present in humans.
术语“CD47+”、“CD47阳性”通常是指在生物体或细胞表面表达CD47蛋白、其片段,或者其中经过1个或多个氨基酸取代的其突变体的特性。CD47阳性细胞可以为过表达CD47的细胞。所述CD47阳性细胞通常可以作为疾病的指示。例如在疾病情况下,所述CD47阳性细胞表面CD47蛋白密度会超过该种细胞在正常条件下所具有的CD47蛋白密度。在某些实施方式中,所述肿瘤或肿瘤细胞可为CD47阳性。例如,所述肿瘤可选自下组:CD47阳性血液肿瘤和/或CD47阳性实体瘤。The terms "CD47+" and "CD47 positive" generally refer to the characteristic of expressing CD47 protein, its fragments, or its mutants with one or more amino acid substitutions on the surface of organisms or cells. CD47 positive cells may be cells overexpressing CD47. Said CD47-positive cells can usually be indicative of a disease. For example, in disease conditions, the CD47 protein density on the surface of the CD47-positive cells will exceed the CD47 protein density of the cells under normal conditions. In certain embodiments, the tumor or tumor cells may be positive for CD47. For example, said tumor may be selected from the group consisting of CD47 positive hematological tumors and/or CD47 positive solid tumors.
本文术语“CD47蛋白”通常是指整联蛋白相关蛋白(IAP),其为一种属于免疫球蛋白超家族的多次跨膜受体。例如,CD47蛋白可与膜整合素(membrane integrins)结合,并与其配体凝血栓蛋白-1(thrombospondin-1,TSP-1)和信号调节蛋白α(signal-regulatory protein alpha,SIRPα)结合。CD47蛋白广泛表达于细胞膜表面。在本申请中,所述CD47蛋白可包括人CD47的任何变体、同种型和物种同系物。The term "CD47 protein" herein generally refers to integrin-associated protein (IAP), which is a multi-transmembrane receptor belonging to the immunoglobulin superfamily. For example, CD47 protein can bind to membrane integrins (membrane integrins) and bind to its ligands thrombospondin-1 (TSP-1) and signal-regulatory protein alpha (SIRPα). CD47 protein is widely expressed on the cell membrane surface. In the present application, the CD47 protein may include any variant, isoform and species homologue of human CD47.
本文术语“突变体”通常是指与不具备任何突变/修饰的蛋白质具有序列同源性的蛋白质性分子,其保留至少一部分生物活性蛋白的治疗和/或生物活性。例如,突变体蛋白质相较于参照生物活性蛋白可共享至少60%、65%、70%、75%、80%、85%、90%、95%、96%、97%、98%或99%的氨基酸序列同一性。在一些实施方案中,“突变体”可以包括经有意地修饰(例如通过定点诱变、编码基因的合成、插入或偶然通过突变)的蛋白质。The term "mutant" herein generally refers to a proteinaceous molecule having sequence homology to a protein without any mutation/modification, which retains at least a part of the therapeutic and/or biological activity of the biologically active protein. For example, a mutant protein may share at least 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% compared to a reference biologically active protein amino acid sequence identity. In some embodiments, a "mutant" may include a protein that has been intentionally modified (eg, by site-directed mutagenesis, synthesis of an encoding gene, insertion, or by chance through mutation).
在本发明中,某氨基酸序列中的某氨基酸残基“相对于”另一氨基酸序列中的某氨基酸残基通常是指,在优化条件下进行氨基酸序列比对时所获得的氨基酸残基对应关系。所述序列比对可通过本领域技术人员了解的方式进行,例如,使用BLAST、BLAST-2、ALIGN、NEEDLE或Megalign(DNASTAR)软件等。本领域技术人员能够确定用于比对的适当参数,包括在所比较的全长序列中实现最优比对所需要的任何算法。In the present invention, a certain amino acid residue in an amino acid sequence "relative to" a certain amino acid residue in another amino acid sequence usually refers to the corresponding relationship of amino acid residues obtained when amino acid sequence alignment is carried out under optimized conditions . The sequence alignment can be performed by means known to those skilled in the art, for example, using BLAST, BLAST-2, ALIGN, NEEDLE or Megalign (DNASTAR) software, etc. Those skilled in the art can determine appropriate parameters for alignment, including any algorithms needed to achieve optimal alignment across the full-length sequences being compared.
本申请所述的氨基酸取代可以为非保守取代。所述非保守取代可包括以非保守的形式改变目标蛋白或多肽中的氨基酸残基,例如将具有某种侧链大小或某种特性(例如,亲水性)的氨基酸残基变为具有不同侧链大小或不同特性(例如,疏水性)的氨基酸残基。Amino acid substitutions described herein may be non-conservative substitutions. The non-conservative substitution may include changing amino acid residues in the target protein or polypeptide in a non-conservative manner, such as changing amino acid residues with a certain side chain size or a certain characteristic (for example, hydrophilicity) to have different Amino acid residues with side chain size or different properties (eg, hydrophobicity).
所述氨基酸取代也可以为保守取代。所述保守取代可包括以保守的形式改变目标蛋白或多肽中的氨基酸残基,例如将具有某种侧链大小或某种特性(例如,亲水性)的氨基酸残基变为具有相同或相似侧链大小或者相同或相似特性(例如,仍为亲水性)的氨基酸残基。这样的保守取代通常不会对所产生的蛋白质的结构或功能带来很大影响。在本申请中,作为所述融合蛋白、其片段,或者其中经过1个或多个氨基酸取代的其突变体的氨基酸序列变体可包括不显著改变蛋白质结构或其功能(例如,阻断CD47与其配体结合的能力)的保守氨基酸取代。The amino acid substitutions may also be conservative substitutions. The conservative substitution may include changing amino acid residues in the target protein or polypeptide in a conservative manner, such as changing amino acid residues with a certain side chain size or a certain characteristic (for example, hydrophilicity) to have the same or similar Amino acid residues with side chain size or the same or similar properties (eg, still hydrophilic). Such conservative substitutions generally do not substantially affect the structure or function of the resulting protein. In the present application, amino acid sequence variants as said fusion protein, fragments thereof, or mutants thereof with one or more amino acid substitutions may include those that do not significantly change the structure of the protein or its function (for example, blocking CD47 and its Ligand binding ability) conservative amino acid substitutions.
作为示例,下述各组中每组内各氨基酸间的相互取代在本申请中可被认为是保守取代:By way of example, mutual substitutions between individual amino acids within each of the following groups may be considered conservative substitutions in this application:
1)丙氨酸(A)、丝氨酸(S)、苏氨酸(T);1) Alanine (A), Serine (S), Threonine (T);
2)天冬氨酸(D)、谷氨酸(E);2) Aspartic acid (D), glutamic acid (E);
3)天冬酰胺(N)、谷氨酰胺(Q);3) Asparagine (N), glutamine (Q);
4)精氨酸(R)、赖氨酸(K)、组氨酸(H);4) Arginine (R), lysine (K), histidine (H);
5)异亮氨酸(I)、亮氨酸(L)、甲硫氨酸(M)、缬氨酸(V);和5) Isoleucine (I), Leucine (L), Methionine (M), Valine (V); and
6)苯丙氨酸(F)、酪氨酸(Y)、色氨酸(W)。6) Phenylalanine (F), tyrosine (Y), tryptophan (W).
本文术语“融合蛋白”通常指由两个或更多个蛋白或多肽融合得到的蛋白。融合蛋白可通过重组DNA技术人工制备。例如,编码所述两个或更多个蛋白或多肽的基因或核酸分子可彼此连接而形成融合基因或融合的核酸分子,该融合基因或融合的核酸分子可编码所述融合蛋白。所述融合基因的翻译可以产生单一多肽,其可以具有融合前的所述两个或更多个蛋白或多肽中至少一个、甚至每一个的性质。The term "fusion protein" herein generally refers to a protein obtained by fusion of two or more proteins or polypeptides. Fusion proteins can be artificially produced by recombinant DNA techniques. For example, the genes or nucleic acid molecules encoding the two or more proteins or polypeptides can be linked to each other to form a fusion gene or a fused nucleic acid molecule which can encode the fusion protein. Translation of the fusion gene may result in a single polypeptide, which may have the properties of at least one, or even each, of the two or more proteins or polypeptides prior to fusion.
在本发明中,所述融合蛋白包括能够特异性结合所述CD47蛋白的人SIRPα结构域和免疫球蛋白Fc区,其中所述人SIRPα结构域可以与所述免疫球蛋白Fc区直接或间接相连。例如,所述人SIRPα结构域可位于所述免疫球蛋白Fc区的N端或C端。例如,所述人SIRPα结构域的C端可以与所述免疫球蛋白Fc的N端直接或间接连接,或所述免疫球蛋白Fc的C端与人SIRPα结构域的N端直接或间接连接。例如,所述人SIRPα结构域可以与所述免疫球蛋白Fc通过连接子相连。In the present invention, the fusion protein includes a human SIRPα domain capable of specifically binding to the CD47 protein and an immunoglobulin Fc region, wherein the human SIRPα domain may be directly or indirectly connected to the immunoglobulin Fc region . For example, the human SIRPα domain may be located at the N- or C-terminus of the immunoglobulin Fc region. For example, the C-terminal of the human SIRPα domain can be directly or indirectly connected to the N-terminal of the immunoglobulin Fc, or the C-terminal of the immunoglobulin Fc can be directly or indirectly connected to the N-terminal of the human SIRPα domain. For example, the human SIRPα domain can be linked to the immunoglobulin Fc via a linker.
本文术语“免疫球蛋白Fc区”通常是指抗体结构Y形结构的基座区域,又叫做片段可结晶区(Fragment crystallizable region,Fc region)。在IgG、IgA和IgD抗体同种型中,Fc区可由两个相同的蛋白质片段组成,其来自抗体两条重链的第二和第三恒定结构域;IgM和IgE的Fc区可在每条多肽链中含有三个重链恒定结构域。IgG的Fc区具有高度保守的N-糖基化位点。在某些实施方式中,所述免疫球蛋白Fc区可包含IgG的Fc区。在某些实施方式中,所述免疫球蛋白Fc区可包含重链恒定区的CH2和CH3区域。在某些实施方式中,所述免疫球蛋白Fc区可包含铰链区。例如,所述免疫球蛋白Fc区可包含选自下述任一项所示的氨基酸序列:SEQ ID NO:3。The term "immunoglobulin Fc region" herein generally refers to the base region of the Y-shaped structure of the antibody structure, also known as the Fragment crystallizable region (Fc region). In IgG, IgA, and IgD antibody isotypes, the Fc region can consist of two identical protein fragments derived from the second and third constant domains of the two heavy chains of the antibody; the Fc region of IgM and IgE can be found in each The polypeptide chain contains three heavy chain constant domains. The Fc region of IgG has highly conserved N-glycosylation sites. In certain embodiments, the immunoglobulin Fc region may comprise an IgG Fc region. In certain embodiments, the immunoglobulin Fc region may comprise the CH2 and CH3 regions of the heavy chain constant region. In certain embodiments, the immunoglobulin Fc region may comprise a hinge region. For example, the immunoglobulin Fc region may comprise an amino acid sequence selected from any of the following: SEQ ID NO: 3.
作为可选择的实施方案,Fc区引入一个或多个改变,通常不多于约5个这样的改变,包括影响某些Fc特性的氨基酸置换。As an alternative embodiment, the Fc region incorporates one or more alterations, usually no more than about 5 such alterations, including amino acid substitutions that affect certain Fc properties.
本文术语“IgG”通常是指免疫球蛋白G(Immunoglobulin G)。IgG是人的免疫球蛋白之一。根据IgG分子中的γ链抗原性差异,人IgG有四个亚型:IgG1、IgG2、IgG3和IgG4。在本申请中,术语“IgG1”通常是指IgG中占比最高的一类亚型,与Fc受体有较高亲和性。例如,所述IgG可为人IgG。又例如,所述IgG可选自下组:IgG1和/或IgG4。The term "IgG" herein generally refers to Immunoglobulin G (Immunoglobulin G). IgG is one of human immunoglobulins. According to the antigenic difference of the γ chain in the IgG molecule, human IgG has four subtypes: IgG1, IgG2, IgG3 and IgG4. In this application, the term "IgG1" generally refers to a subtype with the highest proportion of IgG, which has a higher affinity with Fc receptors. For example, the IgG can be human IgG. For another example, the IgG can be selected from the group consisting of IgG1 and/or IgG4.
本文术语“KD”通常是指特定的抗体-抗原相互作用的解离平衡常数,单位为M(mol/L),其中较低KD表示较高亲和力。KD计算方式如下:KD=Kd/Ka,其中Kd表示解离速率,Ka表示结合速率。可采用本领域周知的方法测量平衡解离常数KD,如表面等离子共振(例如Biacore)或平衡透析法测定,示例性地,可参见本文实施例4所示KD值获得方法。The term "KD" herein generally refers to the dissociation equilibrium constant of a particular antibody-antigen interaction in M (mol/L), where a lower KD indicates a higher affinity. KD is calculated as follows: KD=Kd/Ka, where Kd represents the dissociation rate and Ka represents the on-rate. The equilibrium dissociation constant KD can be measured by methods known in the art, such as surface plasmon resonance (eg, Biacore) or equilibrium dialysis. For example, refer to the method for obtaining the KD value shown in Example 4 herein.
本文术语“抗原结合分子”按最广义使用,是指特异性结合抗原的分子。示例性地,抗原结合分子包括但不限于抗体或抗体模拟物。“抗体模拟物”是指能够与抗原特异性结合,但与抗体结构无关的有机化合物或结合域,示例性地,抗体模拟物包括但不限于affibody、affitin、affilin、经设计的锚蛋白重复蛋白(DARPin)、核酸适体或Kunitz型结构域肽。The term "antigen-binding molecule" is used herein in the broadest sense to refer to a molecule that specifically binds an antigen. Exemplary, antigen binding molecules include, but are not limited to, antibodies or antibody mimetics. "Antibody mimic" refers to an organic compound or binding domain that can specifically bind to an antigen, but has nothing to do with the structure of an antibody. Exemplary, antibody mimics include but are not limited to affibody, affitin, affilin, designed ankyrin repeat proteins (DARPins), aptamers or Kunitz-type domain peptides.
本文术语“嵌合抗原受体(CAR)”是指经改造以在免疫效应细胞上表达并且特异性 结合抗原的人工细胞表面受体,其包含至少(1)细胞外抗原结合结构域,例如抗体的可变重链或轻链,(2)锚定CAR进入免疫效应细胞的跨膜结构域,和(3)胞内信号传导结构域。CAR能够利用细胞外抗原结合结构域以非MHC限制性的方式将T细胞和其它免疫效应细胞重定向至所选择的靶标,例如癌细胞。The term "chimeric antigen receptor (CAR)" herein refers to an artificial cell surface receptor engineered to be expressed on immune effector cells and to specifically bind an antigen, comprising at least (1) an extracellular antigen-binding domain, such as an antibody The variable heavy or light chain, (2) the transmembrane domain that anchors the CAR into immune effector cells, and (3) the intracellular signaling domain. CARs are able to redirect T cells and other immune effector cells to a target of choice, such as cancer cells, in a non-MHC-restricted manner using an extracellular antigen-binding domain.
本文术语“核酸分子”包括包含核苷酸的聚合物的任何化合物和/或物质。每个核苷酸由碱基,特别是嘌呤或嘧啶碱基(即胞嘧啶(C)、鸟嘌呤(G)、腺嘌呤(A)、胸腺嘧啶(T)或尿嘧啶(U))、糖(即脱氧核糖或核糖)和磷酸基团组成。通常,核酸分子由碱基的序列描述,由此所述碱基代表核酸分子的一级结构(线性结构)。碱基的序列通常表示为5′至3′。在本文中,术语核酸分子涵盖脱氧核糖核酸(DNA),包括例如互补DNA(cDNA)和基因组DNA、核糖核酸(RNA),特别是信使RNA(mRNA)、DNA或RNA的合成形式,以及包含两种或更多种这些分子的混合的聚合物。核酸分子可以是线性的或环状的。此外,术语核酸分子包括有义链和反义链二者,以及单链和双链形式。而且,本文所述的核酸分子可含有天然存在的或非天然存在的核苷酸。非天然存在的核苷酸的例子包括具有衍生的糖或磷酸骨架键合或化学修饰的残基的修饰的核苷酸碱基。核酸分子还涵盖DNA和RNA分子,其适合作为载体用于在体外和/或体内,例如在宿主或患者中,直接表达本发明的抗体。此类DNA(例如cDNA)或RNA(例如mRNA)载体可以是未修饰的或修饰的。例如,可以对mRNA进行化学修饰以增强RNA载体的稳定性和/或被编码分子的表达,从而可以将mRNA注入到受试者内以在体内产生抗体(参见例如Stadler等人,Nature Medicine 2017,published online 2017年6月12日,doi:10.1038/nm.4356或EP 2 101 823B1)。本文“分离的”核酸指已经与其天然环境的组分分开的核酸分子。分离的核酸包括在下述细胞中含有的核酸分子,所述细胞通常含有该核酸分子,但该核酸分子存在于染色体外或存在于不同于其天然染色体位置的染色体位置处。Herein the term "nucleic acid molecule" includes any compound and/or substance comprising a polymer of nucleotides. Each nucleotide consists of a base, especially a purine or pyrimidine base (i.e. cytosine (C), guanine (G), adenine (A), thymine (T) or uracil (U)), a sugar (i.e. deoxyribose or ribose) and phosphate groups. Typically, nucleic acid molecules are described by a sequence of bases, whereby the bases represent the primary structure (linear structure) of the nucleic acid molecule. The sequence of bases is usually expressed 5' to 3'. In this context, the term nucleic acid molecule encompasses deoxyribonucleic acid (DNA), including for example complementary DNA (cDNA) and genomic DNA, ribonucleic acid (RNA), especially messenger RNA (mRNA), synthetic forms of DNA or RNA, and synthetic forms of DNA or RNA comprising both Mixed polymers of one or more of these molecules. Nucleic acid molecules can be linear or circular. Furthermore, the term nucleic acid molecule includes both sense and antisense strands, as well as single- and double-stranded forms. Furthermore, the nucleic acid molecules described herein may contain naturally occurring or non-naturally occurring nucleotides. Examples of non-naturally occurring nucleotides include modified nucleotide bases with derivatized sugar or phosphate backbone linkages or chemically modified residues. Nucleic acid molecules also encompass DNA and RNA molecules suitable as vectors for direct expression of antibodies of the invention in vitro and/or in vivo, for example in a host or patient. Such DNA (eg cDNA) or RNA (eg mRNA) vectors may be unmodified or modified. For example, mRNA can be chemically modified to enhance the stability of the RNA vector and/or the expression of the encoded molecule, so that the mRNA can be injected into a subject to generate antibodies in vivo (see e.g. Stadler et al., Nature Medicine 2017, published online 12 June 2017, doi: 10.1038/nm.4356 or EP 2 101 823B1). An "isolated" nucleic acid herein refers to a nucleic acid molecule that has been separated from components of its natural environment. An isolated nucleic acid includes a nucleic acid molecule contained in a cell that normally contains the nucleic acid molecule, but which is present extrachromosomally or at a chromosomal location other than its natural chromosomal location.
本文术语“表达载体”是指能够扩增与其连接的另一个核酸的核酸分子。该术语包括作为自我复制型核酸结构的载体以及整合入已引入该载体的宿主细胞的基因组中的载体。某些载体能够指导与它们可操作连接的核酸的表达。这样的载体在本文中称为“表达载体”。The term "expression vector" herein refers to a nucleic acid molecule capable of amplifying another nucleic acid to which it has been linked. The term includes vectors that are self-replicating nucleic acid structures as well as vectors that integrate into the genome of a host cell into which the vector has been introduced. Certain vectors are capable of directing the expression of nucleic acids to which they are operably linked. Such vectors are referred to herein as "expression vectors".
本文术语“宿主细胞”是指细胞中引入外源核酸的细胞,包括这种细胞的后代。宿主细胞包括“转化体”和“经转化的细胞”,其包括原代的经转化的细胞和来源于其的后代,而不考虑传代的次数。后代在核酸内容物上可能与亲本细胞不完全相同,而是可以包含突变。本文中包括具有与在初始转化的细胞中筛选或选择的相同功能或生物学活性的突变体后代。The term "host cell" herein refers to a cell into which exogenous nucleic acid has been introduced, including the progeny of such a cell. Host cells include "transformants" and "transformed cells," which include the primary transformed cell and progeny derived therefrom, regardless of the number of passages. Progeny may not be identical to the parental cell in nucleic acid content, but may contain mutations. Mutant progeny having the same function or biological activity as screened or selected for in the originally transformed cell are included herein.
本文术语“药物组合物”是指这样的制剂,其以允许包含在其中的活性成分的生物学活性有效的形式存在,并且不含有对施用所述药物组合物的受试者具有不可接受的毒性的另外的成分。As used herein, the term "pharmaceutical composition" refers to a preparation that is present in a form that permits the biological activity of the active ingredients contained therein to be effective and that does not contain substances that are unacceptably toxic to the subject to which the pharmaceutical composition is administered. additional ingredients.
本文术语“治疗”是指外科手术或药物处理(surgical or therapeutic treatment),其目的是预防、减缓(减少)治疗对象中不希望的生理变化或病变,如癌症的进展。有益的或所希望的临床结果包括但不限于症状的减轻、疾病程度减弱、疾病状态稳定(即,未恶化)、疾病进展的延迟或减慢、疾病状态的改善或缓和、以及缓解(无论是部分缓解或完全缓解), 无论是可检测的或不可检测的。需要治疗的对象包括已患有病症或疾病的对象以及易于患上病症或疾病的对象或打算预防病症或疾病的对象。当提到减缓、减轻、减弱、缓和、缓解等术语时,其含义也包括消除、消失、不发生等情况。The term "treatment" herein refers to surgical or therapeutic treatment, the purpose of which is to prevent, slow down (reduce) an undesired physiological change or pathology, such as the progression of cancer, in the subject being treated. Beneficial or desired clinical outcomes include, but are not limited to, alleviation of symptoms, diminished extent of disease, stable disease state (i.e., not worsening), delay or slowing of disease progression, amelioration or palliation of disease state, and remission (whether partial response or complete response), whether detectable or undetectable. Those in need of treatment include those already with the condition or disease as well as those prone to have the condition or disease or those in which the condition or disease is to be prevented. When referring to the terms slow down, lessen, weaken, moderate, alleviate, etc., the meaning of eliminate, disappear, not occur, etc. is also included.
本文术语“受试者”是指接受对如本发明所述的特定疾病或病症的治疗的生物体。对象和患者的实例包括接受疾病或病症治疗的哺乳动物,如人、灵长类动物(例如,猴)或非灵长类哺乳动物。The term "subject" herein refers to an organism receiving treatment for a particular disease or condition as described herein. Examples of subjects and patients include mammals, such as humans, primate (eg, monkeys) or non-primate mammals, receiving treatment for a disease or disorder.
本文术语“有效量”指单独给予或与另一治疗剂组合给予细胞、组织或对象时能有效防止或缓解疾病病症或该疾病进展的治疗剂用量。“有效量”还指足以缓解症状,例如治疗、治愈、防止或缓解相关医学病症,或治疗、治愈、防止或缓解这些病症的速度增加的化合物用量。当将活性成分单独给予个体时,治疗有效剂量单指该成分。当应用某一组合时,治疗有效剂量指产生治疗作用的活性成分的组合用量,而无论是组合、连续或同时给予。The term "effective amount" herein refers to an amount of a therapeutic agent effective to prevent or alleviate a disease condition or the progression of the disease when administered alone or in combination with another therapeutic agent to a cell, tissue or subject. "Effective amount" also refers to an amount of a compound sufficient to relieve symptoms, eg, treat, cure, prevent or alleviate the associated medical condition, or to increase the rate of treatment, cure, prevent or alleviate such condition. When the active ingredient is administered to a subject alone, a therapeutically effective dose refers to that ingredient alone. When a combination is used, a therapeutically effective dose refers to the combined amounts of the active ingredients that produce a therapeutic effect, whether administered in combination, sequentially or simultaneously.
本文术语“癌症”指向或描述哺乳动物中典型地以不受调节的细胞生长为特征的生理状况。此定义中包括良性和恶性癌症。本文术语“肿瘤”或“瘤”是指所有赘生性(neoplastic)细胞生长和增殖,无论是恶性的还是良性的,及所有癌前(pre-cancerous)和癌性细胞和组织。术语“癌症”和“肿瘤”在本文中提到时并不互相排斥。The term "cancer" herein refers to or describes the physiological condition in mammals typically characterized by unregulated cell growth. Both benign and malignant cancers are included in this definition. The term "tumor" or "neoplastic" herein refers to all neoplastic cell growth and proliferation, whether malignant or benign, and to all pre-cancerous and cancerous cells and tissues. The terms "cancer" and "tumor" are not mutually exclusive when referred to herein.
在本申请中,术语“CD47阳性血液肿瘤”通常是指过表达CD47的血液肿瘤,其中可包括各类白血病、淋巴瘤和骨髓瘤。所述“白血病”通常是指血液的一种癌症,其中产生了过多的对抵抗感染不起作用的白细胞,由此挤占了组成血液的其他部分,如血小板和红细胞。白血病可分为急性或慢性白血病。In this application, the term "CD47-positive hematological tumor" generally refers to a hematological tumor overexpressing CD47, which may include various types of leukemia, lymphoma and myeloma. The term "leukemia" generally refers to a cancer of the blood in which too many white blood cells, which are ineffective at fighting infection, are produced, thereby crowding out other parts of the blood, such as platelets and red blood cells. Leukemia can be classified as acute or chronic.
在本申请中,术语“CD47阳性实体瘤”通常是指过表达CD47的实体瘤或有形瘤,其可以通过临床检查,例如,X线摄片、CT扫描、B超或者触诊检查出有形肿块。主要类别可包括癌症(carcinoma)和肉瘤(sarcoma)。In this application, the term "CD47-positive solid tumor" generally refers to a solid tumor or a solid tumor overexpressing CD47, which can be detected by clinical examination, such as X-ray film, CT scan, B-ultrasound or palpation. . Major categories may include carcinoma and sarcoma.
附图说明Description of drawings
图1、酶联免疫反应(ELISA)方法检测SIRPa-Fc融合蛋白与hCD47 ECD-His的结合活性;Fig. 1, enzyme-linked immunoassay (ELISA) method detects the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-His;
图2、酶联免疫反应(ELISA)方法检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性;Fig. 2, the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-mFc detected by enzyme-linked immunosorbent reaction (ELISA);
图3、流式细胞实验(FACS)检测SIRPa-Fc融合蛋白与Jurkat细胞的结合活性;Fig. 3, flow cytometry (FACS) detects the binding activity of SIRPa-Fc fusion protein and Jurkat cell;
图4、流式细胞实验(FACS)检测SIRPa-Fc融合蛋白与Raji细胞的结合活性;Fig. 4, flow cytometry experiment (FACS) detects the binding activity of SIRPa-Fc fusion protein and Raji cell;
图5、检测SIRPa-Fc融合蛋白阻断Raji与受体SIRPa V1的结合活性;Figure 5. Detecting the binding activity of SIRPa-Fc fusion protein blocking Raji and receptor SIRPa V1;
图6、检测SIRPa-Fc融合蛋白阻断Raji与受体SIRPa V2的结合活性;Figure 6. Detecting the binding activity of SIRPa-Fc fusion protein blocking Raji and receptor SIRPa V2;
图7、酶联免疫反应(ELISA)方法检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性;Fig. 7, enzyme-linked immunosorbent reaction (ELISA) method detects the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-mFc;
图8、流式细胞实验(FACS)检测SIRPa-Fc融合蛋白与Jurkat细胞的结合活性;Fig. 8, flow cytometry experiment (FACS) detects the binding activity of SIRPa-Fc fusion protein and Jurkat cell;
图9、酶联免疫反应(ELISA)方法检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性;Fig. 9, enzyme-linked immunoassay (ELISA) method detects the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-mFc;
图10、流式细胞实验(FACS)检测SIRPa-Fc融合蛋白与Jurkat的结合活性;Fig. 10, flow cytometry (FACS) detects the binding activity of SIRPa-Fc fusion protein and Jurkat;
图11、检测SIRPa-Fc融合蛋白介导的对Raji细胞的吞噬作用;Figure 11. Detection of phagocytosis of Raji cells mediated by SIRPa-Fc fusion protein;
图12、检测SIRPa-Fc融合蛋白介导的对DLD1细胞的吞噬作用;Figure 12. Detection of phagocytosis of DLD1 cells mediated by SIRPa-Fc fusion protein;
图13、检测SIRPa-Fc融合蛋白介导的对肿瘤生长的抑制作用。FIG. 13 . Detection of the inhibitory effect on tumor growth mediated by SIRPa-Fc fusion protein.
具体实施方式Detailed ways
下面结合具体实施例来进一步描述本发明,本发明的优点和特点将会随着描述而更为清楚。实施例中未注明具体条件者,按照常规条件或制造商建议的条件进行。所用试剂或仪器未注明生产厂商者,均为可以通过市售购买获得的常规产品。The present invention will be further described below in conjunction with specific embodiments, and the advantages and characteristics of the present invention will become clearer along with the description. Those who do not indicate the specific conditions in the examples are carried out according to the conventional conditions or the conditions suggested by the manufacturer. The reagents or instruments used were not indicated by the manufacturer, and they were all conventional products that could be purchased from the market.
本发明实施例仅是范例性的,并不对本发明的范围构成任何限制。本领域技术人员应该理解的是,在不偏离本发明的精神和范围下可以对本发明技术方案的细节和形式进行修改或替换,但这些修改和替换均落入本发明的保护范围内。The embodiments of the present invention are merely exemplary, and do not constitute any limitation to the scope of the present invention. Those skilled in the art should understand that the details and forms of the technical solutions of the present invention can be modified or replaced without departing from the spirit and scope of the present invention, but these modifications and replacements all fall within the protection scope of the present invention.
实施例1SIRPa突变的质粒构建The plasmid construction of embodiment 1SIRPa mutation
使用多种算法获得亲和力提高的SIRPa突变体,设计合成相应序列,将编码野生型SIRPa IgV和前述突变体的核酸片段克隆至带有不同Fc标签的pTT5载体上,并按已建立的标准分子生物学方法制备质粒,所述质粒编码SIRPa野生型/变体与Fc融合的蛋白。所述使用的SIRPa野生型及变体如下:SIRPa V1、SIRPa V2、Mut10、Mut31、Mut33、Mut35、Mut38、Mut66、Mut67、Mut68、Mut69、Mut70、Mut71、Mut72、Mut73、Mut75、Mut80、Mut81、Mut83、Mut84、Mut86、Mut87、Mut88、Mut89、Mut90、Mut150、Mut152、Mut153、Mut156、Mut157、Mut158、Mut160、Mut162、Mut164、Mut174和Mut178。Using a variety of algorithms to obtain SIRPa mutants with improved affinity, design and synthesize the corresponding sequences, clone the nucleic acid fragments encoding wild-type SIRPa IgV and the aforementioned mutants into pTT5 vectors with different Fc tags, and follow the established standard molecular biology Plasmids were prepared by scientific methods, and the plasmids encoded SIRPα wild-type/variant and Fc-fused proteins. The SIRPa wild type and variants used are as follows: SIRPa V1, SIRPa V2, Mut10, Mut31, Mut33, Mut35, Mut38, Mut66, Mut67, Mut68, Mut69, Mut70, Mut71, Mut72, Mut73, Mut75, Mut80, Mut81, Mut83, Mut84, Mut86, Mut87, Mut88, Mut89, Mut90, Mut150, Mut152, Mut153, Mut156, Mut157, Mut158, Mut160, Mut162, Mut164, Mut174, and Mut178.
前述融合蛋白及各元件的具体序列信息如表1所示,其中,“SIRPa V1”表示野生型SIRPa V1的IgV片段,“SIRPa V2”表示野生型SIRPa V2的IgV片段,“Fc”表示野生型人IgG1的Fc片段,“inert Fc”表示人IgG1的Fc突变型,“MutXX”表示与野生型相比,发生突变的突变型SIRPa,“MutXX-Fc”表示突变型SIRPa与Fc的融合蛋白。“SIRPa V1/V2-Fc”表示野生型SIRPa V1/V2与SEQ ID NO:3所示的野生型Fc片段的融合蛋白。TTI621序列参考WO2019084692A1,如SEQ ID NO:15所示。The specific sequence information of the aforementioned fusion protein and each element is shown in Table 1, wherein "SIRPa V1" represents the IgV fragment of wild-type SIRPa V1, "SIRPa V2" represents the IgV fragment of wild-type SIRPa V2, and "Fc" represents the wild-type The Fc fragment of human IgG1, "inert Fc" indicates the Fc mutant of human IgG1, "MutXX" indicates the mutant SIRPa that is mutated compared with the wild type, and "MutXX-Fc" indicates the fusion protein of mutant SIRPa and Fc. "SIRPa V1/V2-Fc" represents the fusion protein of wild-type SIRPa V1/V2 and the wild-type Fc fragment shown in SEQ ID NO:3. The sequence of TTI621 refers to WO2019084692A1, as shown in SEQ ID NO:15.
表1 SIRPa突变序列Table 1 SIRPa mutant sequence
Figure PCTCN2022128520-appb-000001
Figure PCTCN2022128520-appb-000001
Figure PCTCN2022128520-appb-000002
Figure PCTCN2022128520-appb-000002
Figure PCTCN2022128520-appb-000003
Figure PCTCN2022128520-appb-000003
Figure PCTCN2022128520-appb-000004
Figure PCTCN2022128520-appb-000004
Figure PCTCN2022128520-appb-000005
Figure PCTCN2022128520-appb-000005
Figure PCTCN2022128520-appb-000006
Figure PCTCN2022128520-appb-000006
Figure PCTCN2022128520-appb-000007
Figure PCTCN2022128520-appb-000007
Figure PCTCN2022128520-appb-000008
Figure PCTCN2022128520-appb-000008
Figure PCTCN2022128520-appb-000009
Figure PCTCN2022128520-appb-000009
Figure PCTCN2022128520-appb-000010
Figure PCTCN2022128520-appb-000010
Figure PCTCN2022128520-appb-000011
Figure PCTCN2022128520-appb-000011
实施例2 SIRPa-Fc融合蛋白的生产与纯化Example 2 Production and purification of SIRPa-Fc fusion protein
对HEK293细胞(购自中国科学院细胞库)瞬时转染实施例1构建的质粒(PEI,Polysciences)并使用FreeStyle TM 293 Expression Medium(购自Gibco)在37℃下进行扩大培养。7天后收集细胞培养液,离心去除细胞成分,获得含SIRPa V1-Fc、SIRPa V2-Fc、Mut10-Fc、Mut31-Fc、Mut33-Fc、Mut35-Fc、Mut38-Fc、Mut66-Fc、Mut67-Fc、Mut68-Fc、Mut69-Fc、Mut70-Fc、Mut71-Fc、Mut72-Fc、Mut73-Fc、Mut75-Fc、Mut80-Fc、Mut81-Fc、Mut83-Fc、Mut84-Fc、Mut86-Fc、Mut87-Fc、Mut88-Fc、Mut89-Fc和Mut90-Fc的培养上清液。HEK293 cells (purchased from the Cell Bank of Chinese Academy of Sciences) were transiently transfected with the plasmid (PEI, Polysciences) constructed in Example 1 and expanded at 37°C using FreeStyle TM 293 Expression Medium (purchased from Gibco). After 7 days, the cell culture medium was collected, centrifuged to remove cell components, and cells containing SIRPa V1-Fc, SIRPa V2-Fc, Mut10-Fc, Mut31-Fc, Mut33-Fc, Mut35-Fc, Mut38-Fc, Mut66-Fc, Mut67- Fc, Mut68-Fc, Mut69-Fc, Mut70-Fc, Mut71-Fc, Mut72-Fc, Mut73-Fc, Mut75-Fc, Mut80-Fc, Mut81-Fc, Mut83-Fc, Mut84-Fc, Mut86-Fc, Culture supernatants of Mut87-Fc, Mut88-Fc, Mut89-Fc and Mut90-Fc.
或将质粒和转染试剂(Thermofisher,货号:A29133)加入OptiPRO SFM(Thermofisher,货号:12309019)中混匀后静置5min,加入ExpiCHO-S TM细胞(厂家:Thermofisher,货号:A29127)中,放入5%CO 2,120rpm,37℃摇床培养。转染第二天,加入补料,并将摇床温度调至32℃继续培养。转染第8~11天,收集含Mut174-Fc、Mut178-Fc、Mut150-Fc、Mut152-Fc、Mut153-Fc、Mut156-Fc、Mut157-Fc、Mut158-Fc、Mut160-Fc、Mut162-Fc和Mut164-Fc的细胞上清。 Or add the plasmid and transfection reagent (Thermofisher, product number: A29133) to OptiPRO SFM (Thermofisher, product number: 12309019) and mix well, then let it stand for 5 minutes, then add it to ExpiCHO-S TM cells (manufacturer: Thermofisher, product number: A29127), put Into 5% CO 2 , 120 rpm, 37°C shaker culture. On the second day after transfection, feed was added, and the shaker temperature was adjusted to 32°C to continue culturing. On the 8th to 11th day of transfection, collect cells containing Mut174-Fc, Mut178-Fc, Mut150-Fc, Mut152-Fc, Mut153-Fc, Mut156-Fc, Mut157-Fc, Mut158-Fc, Mut160-Fc, Mut162-Fc and Cell supernatant of Mut164-Fc.
用10mL蛋白A柱(购自博格隆)纯化细胞培养上清液中的融合蛋白。蛋白A柱先 用3~5倍柱体积的平衡缓冲液(PBS磷酸缓冲液,pH7.4)平衡,然后将澄清的培养上清液上样到蛋白A柱,控制流速在10mL/分钟。上样完毕后用平衡缓冲液清洗蛋白A柱,平衡缓冲液的体积为蛋白A柱柱床体积的3~5倍。用洗脱液(0.02M柠檬酸缓冲液,0.1M甘氨酸,0.1M氯化钠,pH3.0)洗脱结合在蛋白A柱上的蛋白,用核酸蛋白检测仪监测洗脱情况(A280紫外吸收峰)。收集洗脱的蛋白,加入Tris缓冲液中和pH,透析后缓冲体系为PBS,收集目的蛋白。用0.22μm的滤器进行无菌过滤,无菌保存,即得纯化的SIRPa-Fc融合蛋白。Purify the fusion protein in the cell culture supernatant with a 10 mL protein A column (purchased from Bogeron). The protein A column was first equilibrated with 3 to 5 column volumes of equilibration buffer (PBS phosphate buffer, pH 7.4), and then the clarified culture supernatant was loaded onto the protein A column at a flow rate of 10 mL/min. After loading the sample, wash the protein A column with equilibration buffer, and the volume of the equilibration buffer is 3 to 5 times the volume of the protein A column bed. Use the eluent (0.02M citric acid buffer, 0.1M glycine, 0.1M sodium chloride, pH3.0) to elute the protein bound to the protein A column, and monitor the elution with a nucleic acid protein detector (A280 ultraviolet absorption peak). Collect the eluted protein, add Tris buffer to neutralize the pH, and the buffer system after dialysis is PBS to collect the target protein. Filter it with a 0.22 μm filter and store it aseptically to obtain the purified SIRPa-Fc fusion protein.
将纯化的SIRPa-Fc融合蛋白进行蛋白产量、蛋白浓度(A280/1.4)、SEC纯度等检测分析,纯化后的SIRPa-Fc融合蛋白的质量合格。其中关于蛋白产量、蛋白浓度和纯度的检测信息参见表2。The purified SIRPa-Fc fusion protein was tested and analyzed for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified SIRPa-Fc fusion protein was qualified. See Table 2 for the detection information about protein yield, protein concentration and purity.
表2 SIRPa-Fc融合蛋白的检测分析Table 2 Detection and analysis of SIRPa-Fc fusion protein
Figure PCTCN2022128520-appb-000012
Figure PCTCN2022128520-appb-000012
Figure PCTCN2022128520-appb-000013
Figure PCTCN2022128520-appb-000013
实施例3酶联免疫反应(ELISA)检测SIRPa-Fc融合蛋白与CD47蛋白结合水平Example 3 Enzyme-linked immunoassay (ELISA) detection of SIRPa-Fc fusion protein and CD47 protein binding level
A.CD47蛋白的生产和纯化A. Production and purification of CD47 protein
(1)hCD47 ECD-His蛋白的生产和纯化(1) Production and purification of hCD47 ECD-His protein
将人的CD47蛋白胞外段(Extracelluar Domain,ECD)氨基酸序列(NCBI中的基因登录号为Q08722,第19-139位氨基酸,具体序列如SEQ ID NO:52所示)偶联6×His序列克隆到pTT5载体。The human CD47 protein extracellular domain (Extracellular Domain, ECD) amino acid sequence (the gene accession number in NCBI is Q08722, amino acids 19-139, the specific sequence is shown in SEQ ID NO: 52) coupled with 6×His sequence Cloned into pTT5 vector.
SEQ ID NO:52SEQ ID NO: 52
Figure PCTCN2022128520-appb-000014
Figure PCTCN2022128520-appb-000014
将质粒和转染试剂PEI(Polysciences,货号:24765-1)加入OPTI-MEM(Gibco,货号:11058021)中混匀后静置15min,加入Expi293细胞(厂家:Thermofisher,货号:A14527)中,放入5%CO 2,120rpm,37℃摇床培养。转染第二天,加入OPM-293ProFeed(上海奥浦迈,货号:F081918-001)和6g/L葡萄糖(厂家:Sigma,货号:G7528)。转染第六天,收集细胞上清;离心去除细胞成分,获得含CD47 ECD-His蛋白的培养上清液。用Ni亲和层析柱(GE,货号:17371206)纯化细胞培养上清液中的蛋白。先用3~5倍柱体积的平衡缓冲液(PBS磷酸缓冲液,pH7.4)(20×PBS缓冲剂500ml,生工,货号B548117-0500)平衡,然后将澄清的培养上清液上样到Ni亲和层析柱,控制流速在5mL/分钟。上样完毕后用平衡缓冲液清洗蛋白A柱,平衡缓冲液的体积为Ni亲和层析柱柱床体积的3~5倍。用0-500mM咪唑(国药,货号:30104961)进行梯度洗脱,用核酸蛋白检测仪监测洗脱情况(A280紫外吸收峰)。收集洗脱的蛋白,用透析卡(购自Thermo Scientific,货号:88252)在4℃下将蛋白透析到PBS磷酸缓冲液。用0.22μm的滤器(Millipore,货号SLGVR13SL)进行无菌过滤,无菌保存,即得纯化的hCD47 ECD-His蛋白。将纯化的hCD47 ECD-His进行蛋白产量、蛋白浓度(A280/1.4)、SEC纯度等检测分析,纯化蛋白质量合格。其中关 于蛋白产量、蛋白浓度和纯度的检测信息参见表3。 Add the plasmid and transfection reagent PEI (Polysciences, Cat. No.: 24765-1) to OPTI-MEM (Gibco, Cat. No.: 11058021) and mix well, then let it stand for 15 min, add it to Expi293 cells (manufacturer: Thermofisher, Cat. No.: A14527), and put Into 5% CO 2 , 120 rpm, 37°C shaker culture. On the second day of transfection, add OPM-293ProFeed (Shanghai Opma, Cat. No.: F081918-001) and 6 g/L glucose (manufacturer: Sigma, Cat. No.: G7528). On the sixth day of transfection, the cell supernatant was collected; the cell components were removed by centrifugation, and the culture supernatant containing CD47 ECD-His protein was obtained. The protein in the cell culture supernatant was purified with a Ni affinity chromatography column (GE, catalog number: 17371206). Equilibrate with 3-5 column volumes of equilibration buffer (PBS phosphate buffer, pH7.4) (20×PBS buffer 500ml, Sanko, Cat. No. B548117-0500), then load the clarified culture supernatant To the Ni affinity chromatography column, control the flow rate at 5mL/min. After loading the sample, the protein A column is washed with an equilibration buffer, and the volume of the equilibration buffer is 3 to 5 times the volume of the column bed of the Ni affinity chromatography column. Gradient elution was carried out with 0-500mM imidazole (Sinopharm, product number: 30104961), and the elution was monitored with a nucleic acid protein detector (A280 ultraviolet absorption peak). The eluted protein was collected and dialyzed into PBS phosphate buffer at 4° C. with a dialysis card (purchased from Thermo Scientific, catalog number: 88252). Sterile filtration was performed with a 0.22 μm filter (Millipore, product number SLGVR13SL), and aseptically stored to obtain purified hCD47 ECD-His protein. The purified hCD47 ECD-His was tested and analyzed for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified protein was qualified. The detection information about protein yield, protein concentration and purity can be found in Table 3.
(2)hCD47 ECD-mFc蛋白的生产和纯化(2) Production and purification of hCD47 ECD-mFc protein
将人的CD47蛋白胞外段(Extracelluar Domain,ECD)氨基酸序列(具体序列如SEQ ID NO:52所示)偶联小鼠Fc序列克隆到pTT5载体。The human CD47 protein extracellular domain (Extracellular Domain, ECD) amino acid sequence (the specific sequence is shown in SEQ ID NO: 52) coupled with the mouse Fc sequence was cloned into the pTT5 vector.
将质粒和转染试剂PEI(Polysciences,货号:24765-1)加入OPTI-MEM(Gibco,货号:11058021)中混匀后静置15min,加入Expi293细胞(厂家:Thermofisher,货号:A14527)中,放入5%CO 2,120rpm,37℃摇床培养。转染第二天,加入OPM-293ProFeed(上海奥浦迈,货号:F081918-001)和6g/L葡萄糖(厂家:Sigma,货号:G7528)。转染第六天,收集细胞上清;离心去除细胞成分,获得含hCD47 ECD-mFc蛋白的培养上清液。用10mL蛋白A柱(GE,货号:17549802)纯化细胞培养上清液中的蛋白。蛋白A柱先用3~5倍柱体积的平衡缓冲液(PBS磷酸缓冲液,pH7.4)(20×PBS缓冲剂500ml,生工,货号B548117-0500)平衡,然后将澄清的培养上清液上样到蛋白A柱,控制流速在10mL/分钟。上样完毕后用平衡缓冲液清洗蛋白A柱,平衡缓冲液的体积为蛋白A柱柱床体积的3~5倍。用洗脱液(0.02M柠檬酸缓冲液,pH3.5)洗脱结合在蛋白A柱上的蛋白,用核酸蛋白检测仪监测洗脱情况(A280紫外吸收峰)。收集洗脱的蛋白,加入Tris缓冲液(国药,货号:30188336)中和pH,透析后缓冲体系为PBS,收集目的蛋白。用0.22μm的滤器(Millipore,货号SLGVR13SL)进行无菌过滤,无菌保存,即得纯化的hCD47 ECD-mFc蛋白。将纯化的hCD47 ECD-mFc进行蛋白产量、蛋白浓度(A280/1.4)、SEC纯度等检测分析,纯化蛋白质量合格。其中关于蛋白产量、蛋白浓度和纯度的检测信息参见表3。 Add the plasmid and transfection reagent PEI (Polysciences, Cat. No.: 24765-1) to OPTI-MEM (Gibco, Cat. No.: 11058021) and mix well, then let it stand for 15 min, add it to Expi293 cells (manufacturer: Thermofisher, Cat. No.: A14527), and put Into 5% CO 2 , 120 rpm, 37°C shaker culture. On the second day of transfection, add OPM-293ProFeed (Shanghai Opma, Cat. No.: F081918-001) and 6 g/L glucose (manufacturer: Sigma, Cat. No.: G7528). On the sixth day of transfection, the cell supernatant was collected; the cell components were removed by centrifugation, and the culture supernatant containing hCD47 ECD-mFc protein was obtained. Purify the protein in the cell culture supernatant with a 10 mL protein A column (GE, catalog number: 17549802). Protein A column was first equilibrated with 3-5 column volumes of equilibration buffer (PBS phosphate buffer, pH7.4) (20×PBS buffer 500ml, Sanko, Cat. No. B548117-0500), and then the clarified culture supernatant The solution was loaded onto the protein A column, and the flow rate was controlled at 10 mL/min. After loading the sample, wash the protein A column with equilibration buffer, and the volume of the equilibration buffer is 3 to 5 times the volume of the protein A column bed. The protein bound to the protein A column was eluted with an eluent (0.02M citric acid buffer, pH 3.5), and the elution was monitored with a nucleic acid protein detector (A280 ultraviolet absorption peak). The eluted protein was collected, and the pH was neutralized by adding Tris buffer (Sinopharm, product number: 30188336). After dialysis, the buffer system was PBS, and the target protein was collected. Sterile filtration was performed with a 0.22 μm filter (Millipore, product number SLGVR13SL), and aseptically stored to obtain purified hCD47 ECD-mFc protein. The purified hCD47 ECD-mFc was tested and analyzed for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified protein was qualified. The detection information about protein yield, protein concentration and purity can be found in Table 3.
表3 CD47蛋白的检测分析Table 3 Detection and analysis of CD47 protein
Figure PCTCN2022128520-appb-000015
Figure PCTCN2022128520-appb-000015
B.检测SIRPa-Fc融合蛋白与hCD47 ECD-His蛋白结合水平B. Detection of SIRPa-Fc fusion protein and hCD47 ECD-His protein binding level
生物素标记hCD47 ECD-His。按照Biotin Labeling kit说明书(货号LK03,购自DO JINDO)向Filtration tube中加入100μL WS buffer和200μg hCD47 ECD-His蛋白,混匀后8000g离心10分钟;加10μL DMSO到NH 2-Reactive Biotin Tube混匀备用;离心结束后加100μL Reaction Buffer和8μL NH 2-Reactive Biotin溶液到Filtration tube,混匀后37度恒温培养箱放置10分钟后加入100μL WS Buffer 8000g离心10分钟,丢弃滤液后再加入200μL WS Buffer 8000g离心10分钟,重复上步骤一次后加入100μL WS Buffer回收标记好的hCD47 ECD-His到新的离心管中,测浓度后备用。 Biotinylated hCD47 ECD-His. Add 100 μL WS buffer and 200 μg hCD47 ECD-His protein to the Filtration tube according to the instructions of the Biotin Labeling kit (product number LK03, purchased from DO JINDO), mix well and centrifuge at 8000 g for 10 minutes; add 10 μL DMSO to the NH 2 -Reactive Biotin Tube and mix well Standby; after centrifugation, add 100 μL Reaction Buffer and 8 μL NH 2 -Reactive Biotin solution to the Filtration tube, mix well, place in a constant temperature incubator at 37 degrees for 10 minutes, then add 100 μL WS Buffer and centrifuge at 8000g for 10 minutes, discard the filtrate and then add 200 μL WS Buffer Centrifuge at 8000g for 10 minutes, repeat the above step once, add 100 μL WS Buffer to recover the marked hCD47 ECD-His into a new centrifuge tube, measure the concentration and set aside.
先将链霉亲和素(streptavidin,下称SA,货号S4762,购自Sigma)用PBS稀释到终浓度3μg/mL,然后以50μL每孔加到96孔ELISA板中,4℃孵育过夜。第二天弃上清,加入封闭液,即含有5%(w/w)脱脂奶粉(购自Sangon,货号:A100777-0500)的PBS缓冲液,37℃封闭2小时。倒掉封闭液,用含有0.1%(v/v)Tween20(购自Sangon,货号A100777-0500)的PBS缓冲液PBST洗板3次。每孔加入2μg/mL生物素标记的hCD47  ECD-His,50μL/孔,37℃孵育1小时,用PBST洗涤3次。每孔加入实施例2所得的纯化的SIRPa-Fc融合蛋白50μL,浓度为50nM起始,5倍梯度稀释,37℃孵育1小时后,用PBST洗板3次。每孔加入1:5000稀释的辣根过氧化物酶(HRP)标记的二抗(购自Bethyl,货号A80-304P)50μL,稀释液为含有1%(w/w)BSA(购自Sangon,货号A500023-0100)的PBS,室温孵育1小时后,用PBST洗板5次。每孔加入50μL TMB底物,室温孵育5分钟,每孔加入50μL终止液(1.0N HCl)。用酶标仪读板(Ensight-HH3400,购自PerkinElmer)读取A450nm数值,结果如图1和表4所示,结果说明纯化后的SIRPa-Fc融合蛋白与hCD47 ECD-His的结合活性均优于野生型V1或者V2,优于TTI621。阴性对照为非相关Fc融合蛋白,下同。其中表中的数据为OD450nm值。Firstly, streptavidin (streptavidin, hereinafter referred to as SA, product number S4762, purchased from Sigma) was diluted with PBS to a final concentration of 3 μg/mL, then added to 96-well ELISA plate at 50 μL per well, and incubated overnight at 4°C. The next day, the supernatant was discarded, and a blocking solution, namely PBS buffer solution containing 5% (w/w) skim milk powder (purchased from Sangon, product number: A100777-0500), was added to block at 37° C. for 2 hours. The blocking solution was discarded, and the plate was washed 3 times with PBS buffer solution PBST containing 0.1% (v/v) Tween20 (purchased from Sangon, Cat. No. A100777-0500). Add 2 μg/mL biotin-labeled hCD47 ECD-His to each well, 50 μL/well, incubate at 37°C for 1 hour, and wash 3 times with PBST. Add 50 μL of the purified SIRPa-Fc fusion protein obtained in Example 2 to each well, the initial concentration is 50 nM, 5-fold serial dilution, and after incubation at 37° C. for 1 hour, the plate is washed 3 times with PBST. Add 50 μL of horseradish peroxidase (HRP)-labeled secondary antibody (purchased from Bethyl, Cat. Product No. A500023-0100) in PBS, incubated at room temperature for 1 hour, and washed the plate 5 times with PBST. Add 50 μL of TMB substrate to each well, incubate at room temperature for 5 minutes, and add 50 μL of stop solution (1.0N HCl) to each well. Read the A450nm value with a microplate reader (Ensight-HH3400, purchased from PerkinElmer), and the results are shown in Figure 1 and Table 4. The results show that the purified SIRPa-Fc fusion protein has excellent binding activity to hCD47 ECD-His Compared with wild-type V1 or V2, it is better than TTI621. The negative control is non-related Fc fusion protein, the same below. The data in the table are OD450nm values.
表4 ELISA检测SIRPa-Fc融合蛋白与hCD47 ECD-His的结合活性Table 4 ELISA detection of binding activity of SIRPa-Fc fusion protein to hCD47 ECD-His
Figure PCTCN2022128520-appb-000016
Figure PCTCN2022128520-appb-000016
Figure PCTCN2022128520-appb-000017
Figure PCTCN2022128520-appb-000017
C.检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc蛋白结合水平C. Detection of SIRPa-Fc fusion protein and hCD47 ECD-mFc protein binding level
先将anti-mFc(购自Jackson,货号115-006-071)用PBS稀释到终浓度2μg/mL,然后以50μL每孔加到96孔ELISA板中,4℃孵育过夜。第二天弃上清,加入封闭液,即含有5%(w/w)脱脂奶粉(购自Sangon,货号A600669-0250)的PBS缓冲液,37℃封闭2小时。倒掉封闭液,用PBST洗板3次。每孔加入0.5μg/mL hCD47 ECD-mFc,50μL/孔,37℃孵育1小时,用PBST洗涤3次。每孔加入实施例2所得的纯化的SIRPa-Fc融合蛋白50μL,浓度为50nM起始,5倍梯度稀释,37℃孵育1小时后,用PBST洗板3次。每孔加入1:5000稀释的辣根过氧化物酶(HRP)标记的二抗(购自Bethyl,货号A80-304P)50μL,稀释液为含有1%(w/w)BSA(购自Sangon,货号A500023-0100)的PBS,室温孵育1小时后,用PBST洗板5次。每孔加入50μL TMB底物,室温孵育5分钟,每孔加入50μL终止液(1.0N HCl)。用酶标仪读板机(Ensight-HH3400,购自PerkinElmer)读取A450nm数值,结果如图2和表5所示,结果说明纯化后的SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性均优于野生型V1或者V2,优于TTI621。表中的数据为OD450nm值。Anti-mFc (purchased from Jackson, Cat. No. 115-006-071) was first diluted with PBS to a final concentration of 2 μg/mL, then added to a 96-well ELISA plate at 50 μL per well, and incubated overnight at 4°C. The supernatant was discarded the next day, and a blocking solution, namely PBS buffer solution containing 5% (w/w) skimmed milk powder (purchased from Sangon, product number A600669-0250), was added to block at 37° C. for 2 hours. Pour off the blocking solution and wash the plate 3 times with PBST. Add 0.5 μg/mL hCD47 ECD-mFc to each well, 50 μL/well, incubate at 37°C for 1 hour, and wash 3 times with PBST. Add 50 μL of the purified SIRPa-Fc fusion protein obtained in Example 2 to each well, the initial concentration is 50 nM, 5-fold serial dilution, and after incubation at 37° C. for 1 hour, the plate is washed 3 times with PBST. Add 50 μL of horseradish peroxidase (HRP)-labeled secondary antibody (purchased from Bethyl, Cat. Product No. A500023-0100) in PBS, incubated at room temperature for 1 hour, and washed the plate 5 times with PBST. Add 50 μL of TMB substrate to each well, incubate at room temperature for 5 minutes, and add 50 μL of stop solution (1.0N HCl) to each well. Read the A450nm value with a microplate reader (Ensight-HH3400, purchased from PerkinElmer), and the results are shown in Figure 2 and Table 5. The results show that the binding activity of the purified SIRPa-Fc fusion protein to hCD47 ECD-mFc is uniform. Better than wild-type V1 or V2, better than TTI621. The data in the table are OD450nm values.
表5 ELISA检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性Table 5 ELISA detection of binding activity of SIRPa-Fc fusion protein to hCD47 ECD-mFc
Figure PCTCN2022128520-appb-000018
Figure PCTCN2022128520-appb-000018
Figure PCTCN2022128520-appb-000019
Figure PCTCN2022128520-appb-000019
实施例4表面等离子共振(SPR)检测SIRPa-Fc融合蛋白与CD47蛋白亲和力Example 4 Surface plasmon resonance (SPR) detection of SIRPa-Fc fusion protein and CD47 protein affinity
应用BIAcore 8K仪器,采用多循环动力学法测定与抗原的亲和力。首先,根据Human Antibody Capture Kit(购自cytiva,29234600)的方法指导,将Anti-human IgG Fc抗体固定到CM5芯片上(购自cytiva,BR100530)上,根据Amine Coupling Kit试剂盒(购自cytiva,BR100633)的指导,以HBS-EP+pH7.4为流动相,将NHS和EDC混合后,活化芯片约600s,用10mM乙酸钠pH5.0将Anti-human IgG Fc稀释至15μg/mL,注射420s,最后用乙醇胺对剩余的活化位点进行封闭。然后,采用多循环动力学法测定与抗原的亲和力,在每一个循环中,首先用Anti-human IgG Fc芯片捕获SIRPa-Fc融合蛋白,然后注入单一浓度的抗原,记录SIRPa-Fc融合蛋白和抗原蛋白的结合和解离过程,最后用3M MgCl 2完成芯片再生,其中流动相为HBS-EP+(10mM HEPES,150mM NaCl,3mM EDTA,0.05%surfactant P20),流速30μL/min,再生时间为30s,检测温度为25℃;最后,根据1:1binding模型,对数据进行分析,拟合抗体抗原结合动力学参数,包括结合速率常数ka、解离速率常数kd、平衡解离常数KD、最大结合信号Rmax。结果如表6所示,结果说明纯化后的SIRPa-Fc融合蛋白与hCD47ECD-mFc的亲和力均优于野生型或者TTI621,其中Mut10-Fc、Mut33-Fc、Mut67-Fc、Mut69-Fc、Mut80-Fc、Mut81-Fc、Mut86-Fc、Mut153-Fc、Mut158-Fc、Mut160-Fc、Mut164-Fc融合蛋白亲和力提高较为明显。 Using BIAcore 8K instrument, the affinity with antigen was determined by multi-cycle kinetic method. First, according to the method guidance of the Human Antibody Capture Kit (purchased from cytiva, 29234600), the Anti-human IgG Fc antibody was immobilized on the CM5 chip (purchased from cytiva, BR100530), and according to the Amine Coupling Kit kit (purchased from cytiva, 29234600), BR100633), use HBS-EP+pH7.4 as the mobile phase, mix NHS and EDC, activate the chip for about 600s, dilute Anti-human IgG Fc to 15μg/mL with 10mM sodium acetate pH5.0, and inject for 420s , and finally the remaining active sites were blocked with ethanolamine. Then, the affinity to the antigen was determined by a multi-cycle kinetic method, in each cycle, the SIRPa-Fc fusion protein was first captured with an Anti-human IgG Fc chip, and then a single concentration of antigen was injected to record the SIRPa-Fc fusion protein and antigen During the protein binding and dissociation process, the chip was regenerated with 3M MgCl 2 at the end. The mobile phase was HBS-EP+ (10mM HEPES, 150mM NaCl, 3mM EDTA, 0.05% surfactant P20), the flow rate was 30μL/min, and the regeneration time was 30s. The temperature was 25°C; finally, according to the 1:1binding model, the data was analyzed to fit the antibody-antigen binding kinetic parameters, including the binding rate constant ka, the dissociation rate constant kd, the equilibrium dissociation constant KD, and the maximum binding signal Rmax. The results are shown in Table 6. The results show that the affinity between the purified SIRPa-Fc fusion protein and hCD47ECD-mFc is better than that of wild type or TTI621, among which Mut10-Fc, Mut33-Fc, Mut67-Fc, Mut69-Fc, Mut80- The affinity of Fc, Mut81-Fc, Mut86-Fc, Mut153-Fc, Mut158-Fc, Mut160-Fc, Mut164-Fc fusion proteins increased significantly.
表6 SPR检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的亲和力Table 6 SPR detection of affinity between SIRPa-Fc fusion protein and hCD47 ECD-mFc
Figure PCTCN2022128520-appb-000020
Figure PCTCN2022128520-appb-000020
Figure PCTCN2022128520-appb-000021
Figure PCTCN2022128520-appb-000021
实施例5流式细胞实验(FACS)检测SIRPa-Fc融合蛋白与细胞的结合活性 Embodiment 5 Flow cytometry experiment (FACS) detects the binding activity of SIRPa-Fc fusion protein and cell
A.检测SIRPa-Fc融合蛋白与Jurkat细胞结合水平A. Detection of the binding level of SIRPa-Fc fusion protein to Jurkat cells
将Jurkat细胞在T-75细胞培养瓶中扩大培养,室温条件下1000rpm离心5分钟,弃培养基,用PBS缓冲液(购自Hyclone,货号SH30256.01)洗涤2次,将细胞用PBS重悬并计数。按每孔1×10 5个细胞,每孔50μL加入到U型底96孔FACS反应板中(购自Corning,货号3795),放在4℃备用。用含有1%(w/w)BSA(购自Sangon,货号A500023-0100)的PBS稀释待测SIRPa-Fc融合蛋白,按每孔50μL加入细胞中混匀,4℃孵育1小时。每孔加入200μL FACS缓冲液[含有1%(w/w)BSA的PBS缓冲液],洗涤2次,1500rpm离心5分钟。去掉上清后,每孔加入100μL稀释的荧光标记的二抗(购自Jackson ImmunoResearch,货号109-605-098),4℃孵育1小时。用FACS缓冲液离心洗涤2次,用100μL的PBS悬浮细胞。用FACS仪(FACS Canto II,购自BD公司)检测和分析结果。 结果如图3和表7所示。结果显示,SIRPa-Fc融合蛋白可结合Jurkat细胞表面的CD47,SIRPa-Fc融合蛋白与Jurkat结合活性均优于野生型V1或者V2,优于TTI621。表中数据MFI为所测细胞群的平均荧光强度值。 Expand the culture of Jurkat cells in a T-75 cell culture flask, centrifuge at 1000 rpm for 5 minutes at room temperature, discard the medium, wash twice with PBS buffer (purchased from Hyclone, product number SH30256.01), and resuspend the cells in PBS And count. Add 1×10 5 cells per well, 50 μL per well into a U-bottom 96-well FACS reaction plate (purchased from Corning, Cat. No. 3795), and store at 4°C for later use. The SIRPa-Fc fusion protein to be tested was diluted with PBS containing 1% (w/w) BSA (purchased from Sangon, Cat. No. A500023-0100), added to the cells at 50 μL per well, mixed, and incubated at 4° C. for 1 hour. Add 200 μL of FACS buffer [PBS buffer containing 1% (w/w) BSA] to each well, wash twice, and centrifuge at 1500 rpm for 5 minutes. After the supernatant was removed, 100 μL of diluted fluorescently-labeled secondary antibody (purchased from Jackson ImmunoResearch, Cat. No. 109-605-098) was added to each well, and incubated at 4°C for 1 hour. Centrifuge and wash twice with FACS buffer, and suspend the cells with 100 μL of PBS. The results were detected and analyzed with a FACS instrument (FACS Canto II, purchased from BD Company). The results are shown in Figure 3 and Table 7. The results showed that SIRPa-Fc fusion protein can bind to CD47 on the surface of Jurkat cells, and the binding activity of SIRPa-Fc fusion protein to Jurkat was better than wild-type V1 or V2, and better than TTI621. The data MFI in the table is the mean fluorescence intensity value of the measured cell population.
表7 FACS检测SIRPa-Fc融合蛋白与Jurkat的结合活性Table 7 FACS detection of binding activity of SIRPa-Fc fusion protein to Jurkat
Figure PCTCN2022128520-appb-000022
Figure PCTCN2022128520-appb-000022
B.检测SIRPa-Fc融合蛋白与Raji细胞结合水平B. Detection of the binding level of SIRPa-Fc fusion protein to Raji cells
将Raji细胞在T-75细胞培养瓶中扩大培养,计数,室温条件下1000rpm离心5分钟,弃培养基,用PBS缓冲液(购自Hyclone,货号SH30256.01)洗涤2次,将细胞用25μg/ml的Fc blocker(购自BD,货号564220)重悬,室温封闭20分钟。按每孔1×10 5个细胞,每孔50μL加入到U型底96孔FACS反应板中(购自Corning,货号3795),放在4℃备用。用含有1%(w/w)BSA(购自Sangon,货号A500023-0100)的PBS稀释待测SIRPa-Fc融合蛋白,按每孔50μL加入细胞中混匀,4℃孵育1小时。每孔加入200μL FACS缓冲 液[含有1%(w/w)BSA的PBS缓冲液],洗涤2次,1500rpm离心5分钟。去掉上清后,每孔加入100μL稀释的荧光标记的二抗(购自Jackson ImmunoResearch,货号109-605-098),4℃孵育1小时。用FACS缓冲液离心洗涤2次,用100μL的PBS悬浮细胞。用FACS仪(FACS Canto II,购自BD公司)检测和分析结果。结果如图4和表8所示。结果显示,SIRPa-Fc融合蛋白可结合Raji细胞表面的CD47,SIRPa-Fc融合蛋白与Raji结合活性均优于野生型V1或者V2,优于TTI621。表中数据MFI为所测细胞群的平均荧光强度值。 Raji cells were expanded and cultured in T-75 cell culture flasks, counted, centrifuged at 1000 rpm for 5 minutes at room temperature, discarded the medium, washed twice with PBS buffer (purchased from Hyclone, product number SH30256.01), and the cells were washed with 25 μg /ml of Fc blocker (purchased from BD, Cat. No. 564220) was resuspended, and blocked at room temperature for 20 minutes. Add 1×10 5 cells per well, 50 μL per well into a U-bottom 96-well FACS reaction plate (purchased from Corning, Cat. No. 3795), and store at 4°C for later use. The SIRPa-Fc fusion protein to be tested was diluted with PBS containing 1% (w/w) BSA (purchased from Sangon, Cat. No. A500023-0100), added to the cells at 50 μL per well, mixed, and incubated at 4° C. for 1 hour. Add 200 μL of FACS buffer [PBS buffer containing 1% (w/w) BSA] to each well, wash twice, and centrifuge at 1500 rpm for 5 minutes. After the supernatant was removed, 100 μL of diluted fluorescently-labeled secondary antibody (purchased from Jackson ImmunoResearch, Cat. No. 109-605-098) was added to each well, and incubated at 4°C for 1 hour. Centrifuge and wash twice with FACS buffer, and suspend the cells with 100 μL of PBS. The results were detected and analyzed with a FACS instrument (FACS Canto II, purchased from BD Company). The results are shown in Figure 4 and Table 8. The results showed that SIRPa-Fc fusion protein can bind to CD47 on the surface of Raji cells, and the binding activity of SIRPa-Fc fusion protein to Raji was better than that of wild-type V1 or V2, and better than that of TTI621. The data MFI in the table is the mean fluorescence intensity value of the measured cell population.
表8 FACS检测SIRPa-Fc融合蛋白与Raji的结合活性Table 8 FACS detection of binding activity of SIRPa-Fc fusion protein to Raji
Figure PCTCN2022128520-appb-000023
Figure PCTCN2022128520-appb-000023
Figure PCTCN2022128520-appb-000024
Figure PCTCN2022128520-appb-000024
实施例6检测SIRPa-Fc融合蛋白阻断Raji与受体SIRPa的结合Example 6 Detecting that SIRPa-Fc fusion protein blocks the binding of Raji to the receptor SIRPa
A.SIRPa蛋白的生产和纯化A. Production and purification of SIRPa protein
将人的SIRPa V1蛋白胞外段(Extracelluar Domain,ECD)氨基酸序列(NCBI中的基因登陆号为NP_542970.1,第31-370位氨基酸,具体序列如SEQ ID NO:53所示)和SIRPa V2蛋白胞外段(Extracelluar Domain,ECD)氨基酸序列(NCBI中的基因登陆号为AAH38510.1,第31-369位氨基酸,具体序列如SEQ ID NO:54所示)分别偶联6×His序列克隆到pTT5载体。The human SIRPa V1 protein extracellular domain (Extracellular Domain, ECD) amino acid sequence (the gene accession number in NCBI is NP_542970.1, amino acids 31-370, the specific sequence is shown in SEQ ID NO: 53) and SIRPa V2 The amino acid sequence of the extracellular domain (ECD) of the protein (the gene accession number in NCBI is AAH38510.1, amino acids 31-369, the specific sequence is shown in SEQ ID NO: 54) was cloned by coupling 6×His sequence respectively to the pTT5 vector.
SEQ ID NO:53SEQ ID NO: 53
Figure PCTCN2022128520-appb-000025
Figure PCTCN2022128520-appb-000025
SEQ ID NO:54SEQ ID NO: 54
Figure PCTCN2022128520-appb-000026
Figure PCTCN2022128520-appb-000026
将所得质粒和转染试剂PEI(Polysciences,货号:24765-1)加入OPTI-MEM(Gibco,货号:11058021)中混匀后静置15min,加入Expi293细胞(厂家:Thermofisher,货号:A14527)中,放入5%CO 2,120rpm,37℃摇床培养。转染第二天,加入OPM-293ProFeed(上海奥浦迈,货号:F081918-001)和6g/L葡萄糖(厂家:Sigma,货号:G7528)。转染 第六天,收集细胞上清;离心去除细胞成分,分别获得含hSIRPa V1 ECD-His和hSIRPa V2 ECD-His蛋白的培养上清液。用Ni亲和层析柱(GE,货号:17371206)纯化细胞培养上清液中的蛋白。先用3~5倍柱体积的平衡缓冲液(PBS磷酸缓冲液,pH7.4)(20×PBS缓冲剂500ml,生工,货号B548117-0500)平衡,然后将澄清的培养上清液上样到Ni亲和层析柱,控制流速在5mL/分钟。上样完毕后用平衡缓冲液清洗蛋白A柱,平衡缓冲液的体积为Ni亲和层析柱柱床体积的3~5倍。用0-500mM咪唑(国药,货号:30104961)进行梯度洗脱,用核酸蛋白检测仪监测洗脱情况(A280紫外吸收峰)。收集洗脱的蛋白,用透析卡(购自Thermo Scientific货号:88252)在4℃下将蛋白透析到PBS磷酸缓冲液。用0.22μm的滤器(Millipore,货号SLGVR13SL)进行无菌过滤,无菌保存,即得纯化的hSIRPa V1 ECD-His和hSIRPa V2 ECD-His蛋白。将纯化的hSIRPa V1 ECD-His和hSIRPa V2 ECD-His进行蛋白产量、蛋白浓度(A280/1.4)、SEC纯度等检测分析,纯化蛋白质量合格。其中关于蛋白产量、蛋白浓度和纯度的检测信息参见表9。 Add the obtained plasmid and transfection reagent PEI (Polysciences, Cat. No.: 24765-1) into OPTI-MEM (Gibco, Cat. No.: 11058021) and mix well, then let it stand for 15 min, then add it into Expi293 cells (manufacturer: Thermofisher, Cat. No.: A14527), Put in 5% CO 2 , 120 rpm, and culture on a shaker at 37°C. On the second day of transfection, add OPM-293ProFeed (Shanghai Opma, Cat. No.: F081918-001) and 6 g/L glucose (manufacturer: Sigma, Cat. No.: G7528). On the sixth day of transfection, the cell supernatant was collected; the cell components were removed by centrifugation, and culture supernatants containing hSIRPa V1 ECD-His and hSIRPa V2 ECD-His proteins were obtained respectively. The protein in the cell culture supernatant was purified with a Ni affinity chromatography column (GE, catalog number: 17371206). Equilibrate with 3-5 column volumes of equilibration buffer (PBS phosphate buffer, pH7.4) (20×PBS buffer 500ml, Sanko, Cat. No. B548117-0500), then load the clarified culture supernatant To the Ni affinity chromatography column, control the flow rate at 5mL/min. After loading the sample, the protein A column is washed with an equilibration buffer, and the volume of the equilibration buffer is 3 to 5 times the volume of the column bed of the Ni affinity chromatography column. Gradient elution was carried out with 0-500mM imidazole (Sinopharm, product number: 30104961), and the elution was monitored with a nucleic acid protein detector (A280 ultraviolet absorption peak). The eluted protein was collected, and the protein was dialyzed into PBS phosphate buffer at 4° C. with a dialysis card (purchased from Thermo Scientific, catalog number: 88252). The purified hSIRPa V1 ECD-His and hSIRPa V2 ECD-His proteins were obtained by sterile filtration with a 0.22 μm filter (Millipore, product number SLGVR13SL) and aseptically stored. The purified hSIRPa V1 ECD-His and hSIRPa V2 ECD-His were tested and analyzed for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified protein was qualified. The detection information about protein yield, protein concentration and purity is shown in Table 9.
表9 SIRPa蛋白的检测分析Table 9 Detection and analysis of SIRPa protein
Figure PCTCN2022128520-appb-000027
Figure PCTCN2022128520-appb-000027
B.检测SIRPa-Fc融合蛋白阻断Raji与受体SIRPa V1的活性B. Detection of SIRPa-Fc fusion protein blocking activity of Raji and receptor SIRPa V1
生物素标记hSIRPa V1 ECD-His,方法同实施例3。将Raji细胞在T-75细胞培养瓶中扩大培养,收集培养基,计数,室温条件下1000rpm离心5分钟,弃培养基,用PBS缓冲液(购自Hyclone,货号SH30256.01)洗涤2次,将细胞用25μg/ml的Fc blocker(购自BD,货号564220)重悬,室温封闭20分钟。按每孔1×10 5个细胞,每孔50μL加入到U型底96孔FACS反应板中(购自Corning,货号3795),放在4℃备用。在PBS磷酸缓冲液中加入1%(w/w)BSA作为FACS缓冲液,将纯化的不同浓度的SIRPa-Fc融合蛋白和生物素化的hSIRRPa V1 ECD-His混合,hSIRRPa V1 ECD-His终浓度为4μg/mL,室温孵育15分钟。之后每孔加入50μL混合物,冰上孵育1小时。用FACS缓冲液离心洗涤2次,每孔加入100μL荧光标记的链亲和霉素(购自Biolegend,货号405243),冰上孵育1小时。用FACS缓冲液离心洗涤2次。用100μL的PBS悬浮细胞,用FACS(FACS Canto II,购自BD公司)检测和分析结果。结果如图5和表10所示,SIRPa-Fc融合蛋白能够有效阻断Raji与SIRPa V1的结合活性,并且阻断活性均优于TTI621或野生型。表中数据MFI为所测细胞群的平均荧光强度值。 The method of biotin-labeling hSIRPa V1 ECD-His was the same as in Example 3. Raji cells were expanded and cultured in T-75 cell culture flasks, the medium was collected, counted, centrifuged at 1000 rpm for 5 minutes at room temperature, the medium was discarded, and washed twice with PBS buffer (purchased from Hyclone, product number SH30256.01). The cells were resuspended with 25 μg/ml Fc blocker (purchased from BD, Cat. No. 564220), and blocked at room temperature for 20 minutes. Add 1×10 5 cells per well, 50 μL per well into a U-bottom 96-well FACS reaction plate (purchased from Corning, Cat. No. 3795), and store at 4°C for later use. Add 1% (w/w) BSA in PBS phosphate buffer as FACS buffer, mix the purified SIRPa-Fc fusion protein with different concentrations and biotinylated hSIRRPa V1 ECD-His, the final concentration of hSIRRPa V1 ECD-His 4 μg/mL, incubate at room temperature for 15 minutes. Afterwards, 50 μL of the mixture was added to each well and incubated on ice for 1 hour. Centrifuge and wash twice with FACS buffer, add 100 μL of fluorescently labeled streptavidin (purchased from Biolegend, catalog number 405243) to each well, and incubate on ice for 1 hour. Centrifuge and wash 2 times with FACS buffer. The cells were suspended with 100 μL of PBS, and the results were detected and analyzed by FACS (FACS Canto II, purchased from BD Company). The results are shown in Figure 5 and Table 10, SIRPa-Fc fusion protein can effectively block the binding activity of Raji and SIRPa V1, and the blocking activity is better than that of TTI621 or wild type. The data MFI in the table is the mean fluorescence intensity value of the measured cell population.
表10 FACS检测SIRPa-Fc融合蛋白阻断Raji与SIRPa V1的结合活性Table 10 FACS detection of SIRPa-Fc fusion protein blocking the binding activity of Raji and SIRPa V1
Figure PCTCN2022128520-appb-000028
Figure PCTCN2022128520-appb-000028
Figure PCTCN2022128520-appb-000029
Figure PCTCN2022128520-appb-000029
C.检测SIRPa-Fc融合蛋白阻断Raji与受体SIRPa V2的活性C. Detection of SIRPa-Fc fusion protein blocking activity of Raji and receptor SIRPa V2
生物素标记hSIRPa V2 ECD-His,方法同实施例3。将Raji细胞在T-75细胞培养瓶中扩大培养,收集培养基,计数,室温条件下1000rpm离心5分钟,弃培养基,用PBS缓冲液(购自Hyclone,货号SH30256.01)洗涤一次,将细胞用25μg/ml的Fc blocker(购自BD,货号564220)重悬,室温封闭20分钟。按每孔1×10 5个细胞,每孔50μL加入到U型底96孔FACS反应板中(购自Corning,货号3795),放在4℃备用。在PBS磷酸缓冲液中加入1%(w/w) BSA作为FACS缓冲液,将纯化的不同浓度的SIRPa-Fc融合蛋白和生物素化的hSIRRPa V2 ECD-His混合,hSIRRPa V2 ECD-His终浓度为4μg/mL,室温孵育15分钟。之后每孔加入50μL混合物,冰上孵育1小时。用FACS缓冲液离心洗涤2次,每孔加入100μL荧光标记的链亲和霉素(购自Biolegend,货号405243),冰上孵育1小时。用FACS缓冲液离心洗涤2次。用100μL的PBS悬浮细胞,用FACS(FACS Canto II,购自BD公司)检测和分析结果。结果如图6A-6B和表11所示,SIRPa-Fc融合蛋白能够有效阻断Raji与SIRPa V2的结合活性,并且阻断活性均优于TTI621。表中数据MFI为所测细胞群的平均荧光强度值。 The method of biotin-labeling hSIRPa V2 ECD-His was the same as in Example 3. Raji cells were expanded and cultured in T-75 cell culture flasks, the medium was collected, counted, centrifuged at 1000rpm for 5 minutes at room temperature, the medium was discarded, and washed once with PBS buffer (purchased from Hyclone, product number SH30256.01). The cells were resuspended with 25 μg/ml Fc blocker (purchased from BD, Cat. No. 564220), and blocked at room temperature for 20 minutes. Add 1×10 5 cells per well, 50 μL per well into a U-bottom 96-well FACS reaction plate (purchased from Corning, Cat. No. 3795), and store at 4°C for later use. Add 1% (w/w) BSA in PBS phosphate buffer as FACS buffer, mix the purified SIRPa-Fc fusion protein with different concentrations and biotinylated hSIRRPa V2 ECD-His, the final concentration of hSIRRPa V2 ECD-His 4 μg/mL, incubate at room temperature for 15 minutes. Afterwards, 50 μL of the mixture was added to each well and incubated on ice for 1 hour. Centrifuge and wash twice with FACS buffer, add 100 μL of fluorescently labeled streptavidin (purchased from Biolegend, catalog number 405243) to each well, and incubate on ice for 1 hour. Centrifuge and wash 2 times with FACS buffer. The cells were suspended with 100 μL of PBS, and the results were detected and analyzed by FACS (FACS Canto II, purchased from BD Company). The results are shown in Figures 6A-6B and Table 11, SIRPa-Fc fusion protein can effectively block the binding activity of Raji and SIRPa V2, and the blocking activity is better than that of TTI621. The data MFI in the table is the mean fluorescence intensity value of the measured cell population.
表11 FACS检测SIRPa-Fc融合蛋白阻断Raji与SIRPa V2的结合活性Table 11 FACS detection of SIRPa-Fc fusion protein blocking the binding activity of Raji and SIRPa V2
Figure PCTCN2022128520-appb-000030
Figure PCTCN2022128520-appb-000030
实施例7 SIRPa-Fc融合蛋白亲和力成熟Example 7 SIRPa-Fc fusion protein affinity maturation
以Mut87-Fc、Mut88-Fc、Mut89-Fc、Mut90-Fc四个质粒为模板,分别构建4个突变文库;每个文库包含针对重点突变位点的单点氨基酸突变及多点突变的组合。理论突变总数:4.7×10 8,构建总文库库容>3.8×10 9。经过2-3轮淘选后,将第2轮或第3轮噬菌体进行亲和力鉴定。 Using the four plasmids Mut87-Fc, Mut88-Fc, Mut89-Fc, and Mut90-Fc as templates, four mutation libraries were constructed respectively; each library contained a combination of single-point amino acid mutations and multiple-point mutations targeting key mutation sites. The total number of theoretical mutations: 4.7×10 8 , and the total library capacity of the construction is >3.8×10 9 . After 2-3 rounds of panning, the 2nd or 3rd round phages were subjected to affinity identification.
类似实施例1,将编码突变体的核酸片段克隆至带有Fc标签的pTT5载体上,并按已建立的标准分子生物学方法制备质粒。所述使用的SIRPa变体如下:Mut113、Mut114和Mut117。前述融合蛋白及各元件的具体序列信息如表12所示,其中,“MutXX-Fc”表示突变型SIRPa与Fc的融合蛋白。Similar to Example 1, the nucleic acid fragment encoding the mutant was cloned into the pTT5 vector with Fc tag, and the plasmid was prepared according to the established standard molecular biology method. The SIRPα variants used were as follows: Mut113, Mut114 and Mut117. The specific sequence information of the aforementioned fusion protein and each element is shown in Table 12, wherein "MutXX-Fc" indicates a fusion protein of mutant SIRPa and Fc.
表12 SIRPa突变序列Table 12 SIRPa mutant sequence
Figure PCTCN2022128520-appb-000031
Figure PCTCN2022128520-appb-000031
Figure PCTCN2022128520-appb-000032
Figure PCTCN2022128520-appb-000032
类似实施例2,用Expi293F系统表达突变蛋白,将纯化的SIRPa-Fc融合蛋白进行蛋白产量、蛋白浓度(A280/1.4)、SEC纯度等检测分析,纯化后的SIRPa-Fc融合蛋白的质量合格。其中关于蛋白产量、蛋白浓度和纯度的检测信息参见表13。Similar to Example 2, the Expi293F system was used to express the mutant protein, and the purified SIRPa-Fc fusion protein was tested for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified SIRPa-Fc fusion protein was qualified. See Table 13 for the detection information about protein yield, protein concentration and purity.
表13 SIRPa-Fc融合蛋白的检测分析Table 13 Detection and analysis of SIRPa-Fc fusion protein
Figure PCTCN2022128520-appb-000033
Figure PCTCN2022128520-appb-000033
类似实施例4,利用表面等离子共振(SPR)检测SIRPa-Fc融合蛋白与CD47蛋白亲和力结果如表14所示,结果说明亲和力成熟后SIRPa-Fc融合蛋白与hCD47 ECD-mFc的亲和力均优于野生型或者TTI621。Similar to Example 4, the results of surface plasmon resonance (SPR) detection of the affinity between SIRPa-Fc fusion protein and CD47 protein are shown in Table 14. The results show that the affinity of SIRPa-Fc fusion protein and hCD47 ECD-mFc after affinity maturation is better than that of wild type or TTI621.
表14 SPR检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的亲和力Table 14 SPR detects the affinity of SIRPa-Fc fusion protein and hCD47 ECD-mFc
SIRPa-Fc融合蛋白SIRPa-Fc fusion protein ka(1/Ms)ka(1/Ms) kd(1/s)kd(1/s) KD(M)KD(M)
Mut88-FcMut88-Fc 1.11E+061.11E+06 9.92E-049.92E-04 8.97E-108.97E-10
Mut113-FcMut113-Fc 9.47E+059.47E+05 2.16E-042.16E-04 2.28E-102.28E-10
Mut114-FcMut114-Fc 1.25E+061.25E+06 2.53E-042.53E-04 2.03E-102.03E-10
Mut117-FcMut117-Fc 1.35E+061.35E+06 4.39E-044.39E-04 3.25E-103.25E-10
SIRPa V1-FcSIRPa V1-Fc 1.76E+051.76E+05 7.64E-047.64E-04 4.34E-094.34E-09
TTI621TTI621 2.50E+052.50E+05 1.19E-031.19E-03 4.76E-094.76E-09
类似实施例3C,检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc蛋白结合水平。结果如图7和表15所示,结果说明亲和力成熟后SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性均优于野生型或者TTI621。Similar to Example 3C, the binding level of SIRPα-Fc fusion protein to hCD47 ECD-mFc protein was detected. The results are shown in Figure 7 and Table 15. The results show that the binding activity of SIRPa-Fc fusion protein to hCD47 ECD-mFc after affinity maturation is better than that of wild type or TTI621.
表15 ELISA检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性Table 15 ELISA detection of binding activity of SIRPa-Fc fusion protein to hCD47 ECD-mFc
Figure PCTCN2022128520-appb-000034
Figure PCTCN2022128520-appb-000034
类似实施例5A,流式细胞实验(FACS)检测SIRPa-Fc融合蛋白与细胞的结合活性。结果如图8和表16所示,结果说明亲和力成熟后SIRPa-Fc融合蛋白与Jurkat细胞结合水平均优于野生型或者TTI621。表中数据MFI为所测细胞群的平均荧光强度值。Similar to Example 5A, flow cytometry (FACS) was used to detect the binding activity of SIRPα-Fc fusion protein to cells. The results are shown in Figure 8 and Table 16, and the results show that the binding level of SIRPa-Fc fusion protein to Jurkat cells after affinity maturation is better than that of wild type or TTI621. The data MFI in the table is the mean fluorescence intensity value of the measured cell population.
表16 FACS检测SIRPa-Fc融合蛋白与Jurkat的结合活性Table 16 FACS detection of binding activity of SIRPa-Fc fusion protein to Jurkat
Figure PCTCN2022128520-appb-000035
Figure PCTCN2022128520-appb-000035
Figure PCTCN2022128520-appb-000036
Figure PCTCN2022128520-appb-000036
实施例8筛选去糖基化突变Example 8 Screening for deglycosylation mutations
为保证后续生产工艺的可控性,我们在Mut81、Mut113、Mut114和Mut117的基础上进一步对82位氨基酸进行突变以保证该位点不引起糖基化修饰。类似实施例1,将编码突变体的核酸片段克隆至带有Fc标签的pTT5载体上,并按已建立的标准分子生物学方法制备质粒。融合蛋白及各元件的具体序列信息如表17所示,其中,“MutXX-Fc”表示突变型SIRPa与Fc的融合蛋白。In order to ensure the controllability of the subsequent production process, we further mutated the 82nd amino acid on the basis of Mut81, Mut113, Mut114 and Mut117 to ensure that this site does not cause glycosylation modification. Similar to Example 1, the nucleic acid fragment encoding the mutant was cloned into the pTT5 vector with Fc tag, and the plasmid was prepared according to the established standard molecular biology method. The specific sequence information of the fusion protein and each element is shown in Table 17, wherein "MutXX-Fc" indicates the fusion protein of mutant SIRPa and Fc.
表17 SIRPa突变序列Table 17 SIRPa mutant sequence
Figure PCTCN2022128520-appb-000037
Figure PCTCN2022128520-appb-000037
Figure PCTCN2022128520-appb-000038
Figure PCTCN2022128520-appb-000038
Figure PCTCN2022128520-appb-000039
Figure PCTCN2022128520-appb-000039
Figure PCTCN2022128520-appb-000040
Figure PCTCN2022128520-appb-000040
Figure PCTCN2022128520-appb-000041
Figure PCTCN2022128520-appb-000041
类似实施例2,用Expi293F或ExpiCHO系统表达纯化突变蛋白,其中Mut92-Fc、Mut93-Fc、Mut94-Fc、Mut95-Fc、Mut97-Fc、Mut98-Fc、Mut99-Fc、Mut100-Fc、Mut105-Fc和Mut107-Fc通过Expi293F系统表达,Mut139-Fc、Mut141-Fc、Mut142-Fc和Mut146-Fc通过ExpiCHO系统表达。将纯化的SIRPa-Fc融合蛋白进行蛋白产量、蛋白浓度(A280/1.4)、SEC纯度等检测分析,纯化后的SIRPa-Fc融合蛋白的质量合格。其中关于蛋白产量、蛋白浓度和纯度的检测信息参见表18。Similar to Example 2, use the Expi293F or ExpiCHO system to express and purify mutant proteins, wherein Mut92-Fc, Mut93-Fc, Mut94-Fc, Mut95-Fc, Mut97-Fc, Mut98-Fc, Mut99-Fc, Mut100-Fc, Mut105- Fc and Mut107-Fc were expressed by Expi293F system, and Mut139-Fc, Mut141-Fc, Mut142-Fc and Mut146-Fc were expressed by ExpiCHO system. The purified SIRPa-Fc fusion protein was tested and analyzed for protein yield, protein concentration (A280/1.4), SEC purity, etc., and the quality of the purified SIRPa-Fc fusion protein was qualified. The detection information about protein yield, protein concentration and purity can be found in Table 18.
表18 SIRPa-Fc融合蛋白的检测分析Table 18 Detection and analysis of SIRPa-Fc fusion protein
Figure PCTCN2022128520-appb-000042
Figure PCTCN2022128520-appb-000042
Figure PCTCN2022128520-appb-000043
Figure PCTCN2022128520-appb-000043
类似实施例4,利用表面等离子共振(SPR)检测SIRPa-Fc融合蛋白与CD47蛋白亲和力结果如表19所示,结果说明去糖基化SIRPa-Fc融合蛋白与hCD47 ECD-mFc的亲和力均优于野生型或者TTI621。Similar to Example 4, the results of surface plasmon resonance (SPR) detection of the affinity between SIRPa-Fc fusion protein and CD47 protein are shown in Table 19, and the results show that the affinity of deglycosylated SIRPa-Fc fusion protein and hCD47 ECD-mFc is better than that of hCD47 ECD-mFc Wild type or TTI621.
表19 SPR检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的亲和力Table 19 SPR detects the affinity of SIRPa-Fc fusion protein and hCD47 ECD-mFc
SIRPa-Fc融合蛋白SIRPa-Fc fusion protein ka(1/Ms)ka(1/Ms) kd(1/s)kd(1/s) KD(M)KD(M)
Mut81-FcMut81-Fc 1.06E+061.06E+06 2.33E-042.33E-04 2.20E-102.20E-10
Mut92-FcMut92-Fc 9.23E+059.23E+05 2.63E-042.63E-04 2.85E-102.85E-10
Mut93-FcMut93-Fc 9.70E+059.70E+05 2.35E-042.35E-04 2.42E-102.42E-10
Mut94-FcMut94-Fc 9.06E+059.06E+05 2.30E-042.30E-04 2.54E-102.54E-10
Mut95-FcMut95-Fc 9.61E+059.61E+05 2.41E-042.41E-04 2.50E-102.50E-10
Mut97-FcMut97-Fc 9.19E+059.19E+05 2.27E-042.27E-04 2.47E-102.47E-10
Mut98-FcMut98-Fc 9.41E+059.41E+05 2.45E-042.45E-04 2.60E-102.60E-10
Mut99-FcMut99-Fc 9.98E+059.98E+05 2.29E-042.29E-04 2.29E-102.29E-10
Mut100-FcMut100-Fc 9.32E+059.32E+05 2.51E-042.51E-04 2.70E-102.70E-10
Mut105-FcMut105-Fc 9.60E+059.60E+05 2.19E-042.19E-04 2.28E-102.28E-10
Mut107-FcMut107-Fc 8.59E+058.59E+05 2.85E-042.85E-04 3.31E-103.31E-10
Mut88-FcMut88-Fc 1.11E+061.11E+06 9.92E-049.92E-04 8.97E-108.97E-10
Mut139-FcMut139-Fc 1.14E+061.14E+06 2.45E-042.45E-04 2.14E-102.14E-10
Mut141-FcMut141-Fc 1.16E+061.16E+06 2.35E-042.35E-04 2.02E-102.02E-10
Mut142-FcMut142-Fc 8.99E+058.99E+05 2.66E-042.66E-04 2.96E-102.96E-10
Mut146-FcMut146-Fc 9.82E+059.82E+05 3.84E-043.84E-04 3.90E-103.90E-10
SIRPa V1-FcSIRPa V1-Fc 1.76E+051.76E+05 7.64E-047.64E-04 4.34E-094.34E-09
TTI621TTI621 2.50E+052.50E+05 1.19E-031.19E-03 4.76E-094.76E-09
类似实施例3C,检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc蛋白结合水平。结果如图9A-9C和表20所示,结果说明去糖基化SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性均优于野生型或者TTI621。Similar to Example 3C, the binding level of SIRPα-Fc fusion protein to hCD47 ECD-mFc protein was detected. The results are shown in Figures 9A-9C and Table 20. The results show that the binding activity of the deglycosylated SIRPa-Fc fusion protein to hCD47 ECD-mFc is better than that of wild type or TTI621.
表20 ELISA检测SIRPa-Fc融合蛋白与hCD47 ECD-mFc的结合活性Table 20 ELISA detects the binding activity of SIRPa-Fc fusion protein and hCD47 ECD-mFc
Figure PCTCN2022128520-appb-000044
Figure PCTCN2022128520-appb-000044
Figure PCTCN2022128520-appb-000045
Figure PCTCN2022128520-appb-000045
类似实施例5A,流式细胞实验(FACS)检测SIRPa-Fc融合蛋白与细胞的结合活性。结果如图10A-10C和表21所示,结果说明去糖基化SIRPa-Fc融合蛋白与Jurkat细胞结合水平均优于野生型或者TTI621。Similar to Example 5A, the binding activity of SIRPα-Fc fusion protein to cells was detected by flow cytometry (FACS). The results are shown in Figures 10A-10C and Table 21. The results show that the binding level of the deglycosylated SIRPa-Fc fusion protein to Jurkat cells is better than that of wild type or TTI621.
表21 FACS检测SIRPa-Fc融合蛋白与Jurkat的结合活性Table 21 FACS detection of binding activity of SIRPa-Fc fusion protein to Jurkat
Figure PCTCN2022128520-appb-000046
Figure PCTCN2022128520-appb-000046
Figure PCTCN2022128520-appb-000047
Figure PCTCN2022128520-appb-000047
实施例9检测SIRPa-Fc融合蛋白介导的对肿瘤细胞的吞噬作用Example 9 Detection of phagocytosis of tumor cells mediated by SIRPa-Fc fusion protein
PBMC自液氮中取出后,置于37℃水浴中化冻。以EasySep TM Buffer(购自Stemcell,货号20144)重悬PBMC,300×g离心5分钟后,弃去上清。以单核细胞分选试剂盒(购自Miltenyi Biotec,货号130-096-537)富集单核细胞,并以rhM-CSF(购自R&D systems,货号216-MC-100)进行诱导分化,每两天换液一次,至第七天收集巨噬细胞备用。 After PBMCs were taken out from liquid nitrogen, they were thawed in a water bath at 37°C. PBMCs were resuspended in EasySep TM Buffer (purchased from Stemcell, Cat. No. 20144), centrifuged at 300×g for 5 minutes, and the supernatant was discarded. Monocytes were enriched with a monocyte sorting kit (purchased from Miltenyi Biotec, product number 130-096-537), and induced to differentiate with rhM-CSF (purchased from R&D systems, product number 216-MC-100). The medium was changed every two days, and the macrophages were collected on the seventh day for use.
将Raji细胞在T-75培养瓶中扩大培养至1×10 6细胞/mL。离心去除培养基,用PBS(购自Hyclone,货号SH30256.01)洗涤两次,将细胞密度调整为1×10 6细胞/mL。以CellTrace TM Violet(购自Thermo Fisher,货号C34557)对Raji细胞进行染色。按同样方法,以CellTrace TM Far Red(购自Thermo Fisher,货号C34572)对巨噬细胞进行染色。将染色后的Raji与巨噬细胞按照E:T=1:2加入96孔板(购自Corning,货号3474),与SIRPa-Fc融合蛋白共同孵育3小时。 Raji cells were expanded to 1×10 6 cells/mL in a T-75 culture flask. The medium was removed by centrifugation, washed twice with PBS (purchased from Hyclone, product number SH30256.01), and the cell density was adjusted to 1×10 6 cells/mL. Raji cells were stained with CellTrace Violet (purchased from Thermo Fisher, Cat. No. C34557). In the same way, macrophages were stained with CellTrace TM Far Red (purchased from Thermo Fisher, Cat. No. C34572). The stained Raji and macrophages were added to a 96-well plate (purchased from Corning, Cat. No. 3474) according to E:T=1:2, and incubated with SIRPa-Fc fusion protein for 3 hours.
实验结束后,向细胞中加入PI(购自Thermo Fisher,货号P3566),孵育5分钟后,进行流式检测(FACS Canto Plus,购自BD公司)。结果如图11A-11B和表22所示,表中数据吞 噬比例计算公式为:CellTrace TM Violet+CellTrace TM Far Red+/CellTrace TM Far Red+。根据结果,SIRPa-Fc融合蛋白能够有效介导巨噬细胞吞噬Raji细胞,且吞噬水平均优于TTI621介导的吞噬水平。 After the experiment, PI (purchased from Thermo Fisher, Cat. No. P3566) was added to the cells, and after incubation for 5 minutes, flow detection (FACS Canto Plus, purchased from BD Company) was performed. The results are shown in Figures 11A-11B and Table 22. The formula for calculating the phagocytosis ratio of the data in the table is: CellTrace TM Violet+CellTrace TM Far Red+/CellTrace TM Far Red+. According to the results, SIRPa-Fc fusion protein can effectively mediate macrophage phagocytosis of Raji cells, and the phagocytosis level is better than that mediated by TTI621.
表22 FACS检测SIRPa-Fc融合蛋白介导的对Raji细胞的吞噬作用Table 22 FACS detection of phagocytosis of Raji cells mediated by SIRPa-Fc fusion protein
Figure PCTCN2022128520-appb-000048
Figure PCTCN2022128520-appb-000048
将DLD1细胞在T-75培养瓶中扩大培养至1×10 6细胞/mL。离心去除培养基,用PBS(购自Hyclone,货号SH30256.01)洗涤两次,将细胞密度调整为1×10 6细胞/mL。以CellTrace TM Violet(购自Thermo Fisher,货号C34557)对DLD1细胞进行染色。按同样方法,以CellTrace TM Far Red(购自Thermo Fisher,货号C34572)对巨噬细胞进行染色。将染色后的DLD1与巨噬细胞按照E:T=1:2加入96孔板(购自Corning,货号3474),与SIRPa-Fc融合蛋白以及0.04nM Cetuximab共同孵育3小时。 Expand the DLD1 cells to 1×10 6 cells/mL in a T-75 culture flask. The medium was removed by centrifugation, washed twice with PBS (purchased from Hyclone, product number SH30256.01), and the cell density was adjusted to 1×10 6 cells/mL. DLD1 cells were stained with CellTrace Violet (purchased from Thermo Fisher, Cat. No. C34557). In the same way, macrophages were stained with CellTrace TM Far Red (purchased from Thermo Fisher, Cat. No. C34572). The stained DLD1 and macrophages were added to a 96-well plate (purchased from Corning, Cat. No. 3474) according to E:T=1:2, and incubated with SIRPa-Fc fusion protein and 0.04nM Cetuximab for 3 hours.
实验结束后,向细胞中加入PI(购自Thermo Fisher,货号P3566),孵育5分钟后,进行流式检测(FACS Canto Plus,购自BD公司)。结果如图12A-12B和表23所示,SIRPa-Fc融合蛋白能够有效促进Cetuximab介导巨噬细胞吞噬DLD1细胞。After the experiment, PI (purchased from Thermo Fisher, Cat. No. P3566) was added to the cells, and after incubation for 5 minutes, flow cytometric detection (FACS Canto Plus, purchased from BD Company) was performed. Results As shown in Figures 12A-12B and Table 23, SIRPa-Fc fusion protein can effectively promote Cetuximab-mediated macrophage phagocytosis of DLD1 cells.
表23 FACS检测SIRPa-Fc融合蛋白促进的对DLD1细胞的吞噬作用Table 23 FACS detection of phagocytosis of DLD1 cells promoted by SIRPa-Fc fusion protein
Figure PCTCN2022128520-appb-000049
Figure PCTCN2022128520-appb-000049
Figure PCTCN2022128520-appb-000050
Figure PCTCN2022128520-appb-000050
实施例10检测SIRPa-Fc融合蛋白介导的对肿瘤生长抑制Example 10 Detection of tumor growth inhibition mediated by SIRPa-Fc fusion protein
雌性NOD-SCID小鼠(约6-8周龄,购自北京维通利华实验动物技术有限公司),接收后适应至少1周后开始实验。保证OE19细胞活率大于90%,按照每只鼠8×10 6/100μL(1640:matrigel=1:1,corning,356237)的体积接种于NOD-SCID小鼠躯干右侧皮下。小鼠接种后根据成瘤体积分组。SIRPa-Fc融合蛋白单用组:小鼠在分组后第0、7、14天腹腔注射30mg/kg;Trastuzumab抗体单用组:小鼠在分组后第0、3、7、14天腹腔注射10mg/kg(组别1),或在分组后第0、7、14天腹腔注射5mg/kg(组别2);SIRPa-Fc融合蛋白和Trastuzumab抗体联用组:按照上述两种药物各自的给药方式,结合给药。每天观察小鼠并记录小鼠体重,每周2-3次测量接种肿瘤体积。当小鼠的肿瘤体积超过终点,即肿瘤体积>2000mm 3,则麻醉处死小鼠。肿瘤体积通过如下公式计算:tumor volume=(length×width 2)/2,length为肿瘤的长径,width为肿瘤的短径。肿瘤抑制率(Tumor growth inhibition rate,TGI%)通过如下公式计算:TGI%=(1-TVi/TVvi)×100%,TVi是特定天数给药组小鼠的肿瘤体积平均值,TVvi是特定天数对照组小鼠的肿瘤体积平均值。根据结果如图13A-13B和表24所示,SIRPa-Fc融合蛋白联用Trastuzumab抗体能够有效抑制肿瘤生长。 Female NOD-SCID mice (approximately 6-8 weeks old, purchased from Beijing Weitong Lihua Experimental Animal Technology Co., Ltd.), received and adapted for at least 1 week before starting the experiment. To ensure that the viability of OE19 cells was greater than 90%, the volume of 8×10 6 /100 μL (1640:matrigel=1:1, corning, 356237) per mouse was inoculated subcutaneously on the right side of the trunk of NOD-SCID mice. Mice were grouped according to tumor volume after inoculation. SIRPa-Fc fusion protein single-use group: mice were intraperitoneally injected with 30 mg/kg on days 0, 7, and 14 after grouping; Trastuzumab antibody single-use group: mice were intraperitoneally injected with 10 mg on days 0, 3, 7, and 14 after grouping /kg (group 1), or intraperitoneal injection of 5 mg/kg (group 2) on the 0th, 7th, and 14th day after grouping; SIRPa-Fc fusion protein and Trastuzumab antibody combination group: according to the respective doses of the above two drugs The way of medicine is combined with administration. The mice were observed daily and their body weight was recorded, and the inoculated tumor volume was measured 2-3 times a week. When the tumor volume of the mice exceeds the end point, ie, the tumor volume is >2000mm 3 , the mice are anesthetized and sacrificed. The tumor volume was calculated by the following formula: tumor volume=(length×width 2 )/2, where length is the long diameter of the tumor, and width is the short diameter of the tumor. The tumor inhibition rate (Tumor growth inhibition rate, TGI%) is calculated by the following formula: TGI%=(1-TVi/TVvi)×100%, TVi is the average tumor volume of mice in the administration group on specific days, and TVvi is the specific days The average tumor volume of mice in the control group. According to the results shown in Figures 13A-13B and Table 24, SIRPa-Fc fusion protein combined with Trastuzumab antibody can effectively inhibit tumor growth.
表24 SIRPa-Fc融合蛋白对肿瘤生长的影响Table 24 Effect of SIRPa-Fc fusion protein on tumor growth
Figure PCTCN2022128520-appb-000051
Figure PCTCN2022128520-appb-000051
Figure PCTCN2022128520-appb-000052
Figure PCTCN2022128520-appb-000052

Claims (22)

  1. 一种多肽,其包含信号调节蛋白a(SIRPa)突变体或其片段,所述突变体相对于野生型SIRPa在选自N51、I31、Q37、L66、K68或T82处具有至少一个氨基酸修饰;优选地,所述氨基酸修饰为取代;优选地,所述野生型SIRPa具有选自SEQ ID NO:1-2中任一个的序列。A polypeptide comprising a signal regulatory protein alpha (SIRPa) mutant or fragment thereof, said mutant having at least one amino acid modification selected from N51, I31, Q37, L66, K68 or T82 relative to wild-type SIRPa; preferably Preferably, the amino acid modification is a substitution; preferably, the wild-type SIRPα has a sequence selected from any one of SEQ ID NO: 1-2.
  2. 权利要求1所述的多肽,所述氨基酸修饰选自下列至少一个氨基酸修饰:(1)N51R;N51G;N51A;N51E;N51F;N51K;N51L;N51M;N51Q;N51T;N51W;(2)I31M;I31Y;(3)Q37T;(4)L66N;L66A;L66V;L66P;L66M;L66E;L66K;L66H;(5)K68Q;K68L;K68D;K68M;K68F;K68I;或(6)T82H;T82L;T82G;T82F;T82D;T82N;T82E;T82Q;T82I;T82K;T82M;T82P;T82R;T82V;T82W;T82Y。The polypeptide of claim 1, wherein the amino acid modification is at least one amino acid modification selected from the group consisting of: (1) N51R; N51G; N51A; N51E; N51F; N51K; N51L; N51M; N51Q; I31Y; (3) Q37T; (4) L66N; L66A; L66V; L66P; L66M; L66E; L66K; L66H; (5) K68Q; T82F; T82D; T82N; T82E; T82Q; T82I; T82K; T82M; T82P; T82R; T82V; T82W; T82Y.
  3. 权利要求2所述的多肽,相对于具有SEQ ID NO:1的野生型SIRPa,其包含选自下列组的氨基酸突变:The polypeptide of claim 2, relative to wild-type SIRPa having SEQ ID NO: 1, comprising an amino acid mutation selected from the group consisting of:
    (1)I31Y;N51R;L66N;(2)I31Y;N51R;L66N;T82H;(3)I31Y;N51R;L66N;T82L;(4)I31M;N51R;L66N;K68Q;T82H;(5)I31M;N51R;L66N;K68L;T82G;(6)I31M;N51R;L66N;K68I;T82G;(7)N51G;(8)N51R;(9)I31M;N51G;(10)I31M;N51R;(11)I31Y;N51G;(12)I31Y;N51R;(13)Q37T;N51G;(14)Q37T;N51R;(15)I31Y;N51R;L66A;(16)I31Y;N51R;L66V;(17)I31Y;N51R;L66P;(18)I31Y;N51R;L66M;(19)I31Y;N51R;L66E;(20)I31Y;N51R;L66K;(21)I31Y;N51R;L66H;(22)N51A;(23)N51E;(24)N51F;(25)N51K;(26)N51L;(27)N51M;(28)N51Q;(29)N51T;(30)N51W;(31)I31M;N51R;L66N;K68D;(32)I31M;N51R;L66M;K68M;(33)I31Y;N51R;L66N;K68D;(34)I31M;N51R;L66N;K68Q;(35)I31M;N51R;L66N;K68L;(36)I31Y;N51R;L66N;K68F;(37)I31M;N51R;L66N;K68I;(38)I31Y;N51R;L66N;T82F;(39)I31Y;N51R;L66N;T82D;(40)I31Y;N51R;L66N;T82N;(41)I31Y;N51R;L66N;T82E;(42)I31Y;N51R;L66N;T82Q;(43)I31Y;N51R;L66N;T82G;(44)I31Y;N51R;L66N;T82I;(45)I31Y;N51R;L66N;T82K;(46)I31Y;N51R;L66N;T82M;(47)I31Y;N51R;L66N;T82P;(48)I31Y;N51R;L66N;T82R;(49)I31Y;N51R;L66N;T82V;(50)I31Y;N51R;L66N;T82W;(51)I31Y;N51R;L66N;T82Y;(52)I31M;N51R;L66N;K68Q;T82G;(53)I31M;N51R;L66N;K68Q;T82L;(54)I31M;N51R;L66N;K68Q;T82V;(55)I31M;N51R;L66N;K68L;T82H;(56)I31M;N51R;L66N;K68L;T82L;(57)I31M;N51R;L66N;K68L;T82V;(58)I31M;N51R;L66N;K68I;T82H;(59)I31M;N51R;L66N;K68I;T82L;(60)I31M;N51R;L66N;K68I;T82V。(1) I31Y; N51R; L66N; (2) I31Y; N51R; L66N; T82H; (3) I31Y; ; L66N; K68L; T82G; (6) I31M; N51R; L66N; K68I; T82G; (7) N51G; (8) N51R; (9) I31M; N51G; (10) I31M; (12) I31Y; N51R; (13) Q37T; N51G; (14) Q37T; N51R; (15) I31Y; N51R; L66A; (16) I31Y; 18) I31Y; N51R; L66M; (19) I31Y; N51R; L66E; (20) I31Y; N51R; L66K; (21) I31Y; (25) N51K; (26) N51L; (27) N51M; (28) N51Q; (29) N51T; (30) N51W; (31) I31M; K68M; (33)I31Y; N51R; L66N; K68D; (34) I31M; N51R; L66N; K68Q; (35) I31M; N51R; N51R; L66N; K68I; (38) I31Y; N51R; L66N; T82F; (39) I31Y; N51R; L66N; T82D; (40) I31Y; N51R; L66N; (42) I31Y; N51R; L66N; T82Q; (43) I31Y; N51R; L66N; T82G; (44) I31Y; N51R; L66N; T82M; (47) I31Y; N51R; L66N; T82P; (48) I31Y; (51) I31Y; N51R; L66N; T82Y; (52) I31M; N51R; L66N; K68Q; T82G; (53) I31M; (55) I31M; N51R; L66N; K68L; T82H; (56) I31M; N51R; L66N; K68L; T82L; (57) I31M; T82H; (59)I31M;N51R;L66N;K68I;T82L;(60)I31M;N51R;L66N;K68I;T82V.
  4. 权利要求1-3任一项所述的多肽,其中所述多肽在其N端或C端与免疫球蛋白Fc区融合;优选的,所述免疫球蛋白Fc区选自人IgG1、IgG2或IgG4的Fc区或其突变型;更优选的,所述免疫球蛋白Fc区选自人IgG1的Fc区或其突变型。The polypeptide according to any one of claims 1-3, wherein the polypeptide is fused to an immunoglobulin Fc region at its N-terminus or C-terminus; preferably, the immunoglobulin Fc region is selected from human IgG1, IgG2 or IgG4 The Fc region of the immunoglobulin or its mutant type; more preferably, the immunoglobulin Fc region is selected from the Fc region of human IgG1 or its mutant type.
  5. 权利要求4所述的多肽,其中所述Fc突变型包含相对于野生型人IgG1的以下氨基酸修饰中的至少一个:L234A、L235A、G237A和N297A;优选的,所述氨基酸修饰包含 (1)N297A突变;(2)L234A、L235A以及G237A突变;或(3)L234A、L235A、G237A以及N297A突变。The polypeptide according to claim 4, wherein the Fc mutant type comprises at least one of the following amino acid modifications relative to wild-type human IgG1: L234A, L235A, G237A and N297A; preferably, the amino acid modification comprises (1) N297A Mutations; (2) L234A, L235A, and G237A mutations; or (3) L234A, L235A, G237A, and N297A mutations.
  6. 权利要求5所述的多肽,其中所述Fc突变型与人IgG Fc区的野生型相比展现消除或减少的效应功能,消除或降低的C1q结合和Fcγ受体结合。The polypeptide of claim 5, wherein the Fc mutant exhibits abolished or reduced effector function, abolished or reduced C1q binding and Fcγ receptor binding compared to the wild type of the human IgG Fc region.
  7. 权利要求1-6任一项所述的多肽,其中所述多肽具有SEQ ID NO:4-14,17-51,55-110中任一个的氨基酸序列。The polypeptide according to any one of claims 1-6, wherein said polypeptide has the amino acid sequence of any one of SEQ ID NO: 4-14, 17-51, 55-110.
  8. 权利要求1-7任一项所述的多肽,其中所述多肽具有至少6×10 -9M的针对CD47的KD。 The polypeptide of any one of claims 1-7, wherein said polypeptide has a KD for CD47 of at least 6 x 10 -9 M.
  9. 权利要求1-8任一项所述的多肽,其还连接有其他功能性分子,所述其他功能性分子可选自以下一种或多种:信号肽、蛋白标签、其他抗原结合分子、白细胞介素、细胞因子、类固醇、抗炎剂、免疫调节剂或细胞毒素。The polypeptide according to any one of claims 1-8, which is also connected with other functional molecules, and the other functional molecules can be selected from one or more of the following: signal peptides, protein tags, other antigen-binding molecules, leukocytes interkines, cytokines, steroids, anti-inflammatory agents, immunomodulators or cytotoxins.
  10. 权利要求1-9任一项所述的多肽,其中所述多肽是单体的,或聚合成多聚体。The polypeptide of any one of claims 1-9, wherein the polypeptide is monomeric, or polymerized into multimers.
  11. 一种嵌合抗原受体(CAR),其至少包含细胞外抗原结合结构域、跨膜结构域和胞内信号传导结构域,所述细胞外抗原结合结构域包含权利要求1-10任一项的多肽。A chimeric antigen receptor (CAR), which at least comprises an extracellular antigen binding domain, a transmembrane domain and an intracellular signaling domain, the extracellular antigen binding domain comprising any one of claims 1-10 of polypeptides.
  12. 一种免疫效应细胞,其表达权利要求11所述的嵌合抗原受体,或包含编码权利要求11所述嵌合抗原受体的核酸片段;优选地,所述免疫效应细胞选自T细胞、NK细胞(natural killer cell)、NKT细胞(natural killer T cell)、DNT细胞(double negative T cell)、单核细胞、巨噬细胞、树突状细胞或肥大细胞,所述T细胞优选自细胞毒性T细胞、调节性T细胞或辅助性T细胞;优选地,所述免疫效应细胞为自体免疫效应细胞或同种异体免疫效应细胞。An immune effector cell expressing the chimeric antigen receptor according to claim 11, or comprising a nucleic acid fragment encoding the chimeric antigen receptor according to claim 11; preferably, the immune effector cell is selected from T cells, NK cells (natural killer cell), NKT cells (natural killer T cell), DNT cells (double negative T cell), monocytes, macrophages, dendritic cells or mast cells, said T cells are preferably selected from cytotoxic T cells, regulatory T cells or helper T cells; preferably, the immune effector cells are autoimmune effector cells or allogeneic immune effector cells.
  13. 一种核酸分子,其编码权利要求1-10任一项所述的多肽,或权利要求11所述的嵌合抗原受体。A nucleic acid molecule encoding the polypeptide of any one of claims 1-10, or the chimeric antigen receptor of claim 11.
  14. 包含权利要求13所述的核酸分子的表达载体。An expression vector comprising the nucleic acid molecule of claim 13.
  15. 一种宿主细胞,其包含权利要求14所述的载体;优选地,所述细胞为原核细胞或真核细胞,例如细菌(大肠杆菌)、真菌(酵母)、昆虫细胞或哺乳动物细胞(CHO细胞系或293T细胞系)。A kind of host cell, it comprises the carrier described in claim 14; Preferably, described cell is prokaryotic cell or eukaryotic cell, such as bacterium (Escherichia coli), fungus (yeast), insect cell or mammalian cell (CHO cell line or 293T cell line).
  16. 一种制备权利要求1-10任一项所述多肽的方法,其包括培养权利要求15的宿主细胞,以及分离所述宿主细胞表达的多肽。A method for preparing the polypeptide according to any one of claims 1-10, comprising culturing the host cell according to claim 15, and isolating the polypeptide expressed by the host cell.
  17. 一种制备权利要求12所述免疫效应细胞的方法,其包括将编码权利要求11所述CAR的核酸片段导入所述免疫效应细胞,可选地,还包括启动所述免疫效应细胞表达权利要求11所述CAR。A method for preparing immune effector cells according to claim 12, comprising introducing the nucleic acid fragment encoding the CAR according to claim 11 into the immune effector cells, optionally, further comprising enabling the immune effector cells to express claim 11 The CAR.
  18. 一种药物组合物,包含可药用的载体和能够有效地抑制CD47+疾病细胞的生长或增殖的量的根据权利要求1-10中任一项所述的多肽,或权利要求12的免疫效应细胞,或权利要求13的核酸分子,或权利要求14的载体;或权利要求16-17任一项方法制备获得的产品。A pharmaceutical composition comprising a pharmaceutically acceptable carrier and the polypeptide according to any one of claims 1-10, or the immune effector cell of claim 12, in an amount capable of effectively inhibiting the growth or proliferation of CD47+ disease cells , or the nucleic acid molecule of claim 13, or the carrier of claim 14; or the product obtained by any method of claims 16-17.
  19. 权利要求1-10任一项所述的多肽,权利要求12的免疫效应细胞,权利要求13所 述的核酸分子,权利要求14所述的表达载体,权利要求15所述的宿主细胞,权利要求16-17任一项所述方法制备获得的产品,或权利要求18所述的药物组合物用于制备治疗表达CD47的肿瘤的药物的用途;优选地,所述肿瘤是CD47阳性血液肿瘤或CD47阳性实体瘤,再优选的,所述CD47阳性血液肿瘤包括白血病、淋巴瘤和骨髓瘤,所述CD47阳性实体瘤包括肉瘤。The polypeptide according to any one of claims 1-10, the immune effector cell according to claim 12, the nucleic acid molecule according to claim 13, the expression vector according to claim 14, the host cell according to claim 15, the The product prepared by the method described in any one of 16-17, or the use of the pharmaceutical composition described in claim 18 for the preparation of a medicament for treating a tumor expressing CD47; preferably, the tumor is a CD47-positive blood tumor or a CD47 Positive solid tumors, more preferably, the CD47-positive blood tumors include leukemia, lymphoma and myeloma, and the CD47-positive solid tumors include sarcoma.
  20. 一种治疗表达CD47的肿瘤的方法,所述方法包括向受试者施用有效量的权利要求1-10所述的多肽,权利要求12的免疫效应细胞,权利要求13所述的核酸分子,权利要求14所述的表达载体,权利要求15所述的宿主细胞,权利要求16-17任一项所述方法制备获得的产品,或权利要求18所述的药物组合物;优选地,所述肿瘤是CD47阳性血液肿瘤或CD47阳性实体瘤,再优选的,所述CD47阳性血液肿瘤包括白血病、淋巴瘤和骨髓瘤,所述CD47阳性实体瘤包括肉瘤。A method for treating a tumor expressing CD47, the method comprising administering to a subject an effective amount of the polypeptide of claims 1-10, the immune effector cell of claim 12, the nucleic acid molecule of claim 13, the The expression vector according to claim 14, the host cell according to claim 15, the product prepared by the method according to any one of claims 16-17, or the pharmaceutical composition according to claim 18; preferably, the tumor It is a CD47-positive blood tumor or a CD47-positive solid tumor. More preferably, the CD47-positive blood tumor includes leukemia, lymphoma and myeloma, and the CD47-positive solid tumor includes sarcoma.
  21. 权利要求1-10任一项所述的多肽,权利要求12的免疫效应细胞,权利要求13所述的核酸分子,权利要求14所述的表达载体,权利要求15所述的宿主细胞,权利要求16-17任一项所述方法制备获得的产品,或权利要求18所述的药物组合物用于治疗表达CD47的肿瘤;优选地,所述肿瘤是CD47阳性血液肿瘤或CD47阳性实体瘤,再优选的,所述CD47阳性血液肿瘤包括白血病、淋巴瘤和骨髓瘤,所述CD47阳性实体瘤包括肉瘤。The polypeptide according to any one of claims 1-10, the immune effector cell according to claim 12, the nucleic acid molecule according to claim 13, the expression vector according to claim 14, the host cell according to claim 15, the The product prepared by the method described in any one of 16-17, or the pharmaceutical composition described in claim 18 is used to treat tumors expressing CD47; preferably, the tumors are CD47-positive blood tumors or CD47-positive solid tumors, and then Preferably, the CD47-positive blood tumors include leukemia, lymphoma and myeloma, and the CD47-positive solid tumors include sarcoma.
  22. 一种检测生物学样品中CD47表达的方法,其特征在于,所述方法包括在权利要求1-10任一项所述的多肽与CD47之间能够形成复合物的条件下,使所述生物学样品与权利要求1-10任一项所述的多肽接触;优选地,所述方法还包括检测所述复合物的形成,指示样品中CD47的存在或表达水平。A method for detecting the expression of CD47 in a biological sample, characterized in that the method comprises making the biological The sample is contacted with the polypeptide according to any one of claims 1-10; preferably, the method further comprises detecting the formation of the complex, indicating the presence or expression level of CD47 in the sample.
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