WO2023051464A1 - Pyrazolopyridine compounds as tam inhibitors - Google Patents
Pyrazolopyridine compounds as tam inhibitors Download PDFInfo
- Publication number
- WO2023051464A1 WO2023051464A1 PCT/CN2022/121368 CN2022121368W WO2023051464A1 WO 2023051464 A1 WO2023051464 A1 WO 2023051464A1 CN 2022121368 W CN2022121368 W CN 2022121368W WO 2023051464 A1 WO2023051464 A1 WO 2023051464A1
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- WO
- WIPO (PCT)
- Prior art keywords
- compound
- pharmaceutically acceptable
- acceptable salt
- optionally substituted
- heterocyclyl
- Prior art date
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Classifications
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D487/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
- C07D487/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
- C07D487/04—Ortho-condensed systems
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/14—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D413/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D413/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
- C07D417/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
- C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
- C07D471/04—Ortho-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
Definitions
- the present disclosure generally relates to pyrazolopyridine compounds useful as inhibitors of TAM kinases, in particular as intibitors of AXL and MER kinases, as well as pharmaceutical compositions comprising these compounds and methods of treatment by administration of these compounds or the pharmaceutical compositions.
- Receptor tyrosine kinases are cell-surface transmembrane receptors that contain regulated kinase activity within their cytoplasmic domain and play an important role in signal transduction in both normal and malignant cells. Overexpression or ectopic expression of the TAM receptors has been detected in a wide array of human cancers.
- AXL and MER are two members of the TAM (TYRO3-AXL-MER) family of receptor tyrosine kinases, which, when activated, can regulate tumor cell survival, proliferation, migration and invasion, angiogenesis, and tumor-host interactions.
- TAM TYRO3-AXL-MER
- AXL and MER are critical regulators of innate immunity, phagocytosis, and immune-suppressive activity. Therefore, targeting both AXL and MER kinases may not only impact the growth, survival and malignant progression of neoplastic cells directly, but also has the potential to restore and enhance host immunity against cancers.
- TAM kinases in particular AXL and MER kinases.
- the present disclosure provides compounds or pharmaceutically acceptable salts thereof, which are capable of inhibiting TAM kinases, in particular AXL and MER kinases. Methods for use of such compounds for treatment of various diseases or conditions, such as cancer, are also provided.
- the present disclosure provides a compound having Formula (I) :
- Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms
- Ring B is phenyl or 6-member heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl
- each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- the present disclosure provides a compound having Formula (Ia) :
- the present disclosure provides a compound selected from the group consisting of:
- the present disclosure provides a compound having Formula (II) :
- Ring A is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms
- Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- W is CH, N, O, or S
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino or alkyl
- R 3 is null, hydrogen, oxo, alkyl or haloalkyl
- R 4 is NH 2 or haloalkyl
- each R b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- the present disclosure provides a compound selected from the group consisting of:
- Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms
- Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl
- each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- the present disclosure provides a compound selected from:
- the present disclosure provides a compound having Formula (IV) :
- Ring A is a 6-membered heterocyclyl or 6-membered heteroaryl, each of which comprises 1 or 2 nitrogen atoms and is optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl;
- Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl
- each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- the present disclosure provides a compound selected from:
- the present disclosure provides a pharmaceutical composition
- a pharmaceutical composition comprising the compound of the present disclosure or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.
- the present disclosure provides a method for inhibiting a TAM kinase, comprising contacting the TAM kinase with the compound of the present disclosure or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of the present disclosure.
- the present disclosure provides a method for inhibiting AXL and MER kinases, comprising contacting the AXL and MER kinases with the compound of the present disclosure or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of the present disclosure.
- the present disclosure provides a method for treating a disease or disorder mediated by TAM in a subject in need thereof, comprising administering an effective amount of the compound of the present disclosure or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of the present disclosure to the subject.
- linking substituents are described. It is specifically intended that each linking substituent includes both the forward and backward forms of the linking substituent.
- -NR (CR’R”) -includes both -NR (CR’R”) -and - (CR’R”) NR-.
- the Markush variables listed for that group are understood to be linking groups. For example, if the structure requires a linking group and the Markush group definition for that variable lists “alkyl” , then it is understood that the “alkyl” represents a linking alkylene group.
- any variable e.g., R i
- its definition at each occurrence is independent of its definition at every other occurrence.
- R i the definition at each occurrence is independent of its definition at every other occurrence.
- the group may optionally be substituted with up to two R i moieties and R i at each occurrence is selected independently from the definition of R i .
- combinations of substituents and/or variables are permissible, but only if such combinations result in stable compounds.
- C i-j indicates a range of the carbon atoms numbers, wherein i and j are integers and the range of the carbon atoms numbers includes the endpoints (i.e. i and j) and each integer point in between, and wherein j is greater than i.
- C 1-6 indicates a range of one to six carbon atoms, including one carbon atom, two carbon atoms, three carbon atoms, four carbon atoms, five carbon atoms and six carbon atoms.
- the term “C 1-12 ” indicates 1 to 12, particularly 1 to 10, particularly 1 to 8, particularly 1 to 6, particularly 1 to 5, particularly 1 to 4, particularly 1 to 3 or particularly 1 to 2 carbon atoms.
- alkyl refers to a saturated linear or branched-chain hydrocarbon radical, which may be optionally substituted independently with one or more substituents described below.
- C i-j alkyl refers to an alkyl having i to j carbon atoms.
- alkyl groups contain 1 to 10 carbon atoms.
- alkyl groups contain 1 to 9 carbon atoms.
- alkyl groups contain 1 to 8 carbon atoms, 1 to 7 carbon atoms, 1 to 6 carbon atoms, 1 to 5 carbon atoms, 1 to 4 carbon atoms, 1 to 3 carbon atoms, or 1 to 2 carbon atoms.
- C 1-10 alkyl examples include, but are not limited to, methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl, and decyl.
- C 1-6 alkyl are methyl, ethyl, propyl, isopropyl, n-butyl, i-butyl, s-butyl, t-butyl, n-pentyl, 2-pentyl, 3-pentyl, 2-methyl-2-butyl, 3-methyl-2-butyl, 3-methyl-1-butyl, 2-methyl-1-butyl, 1-hexyl, 2-hexyl, 3-hexyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl, 4-methyl-2-pentyl, 3-methyl-3-pentyl, 2-methyl-3-pentyl, 2, 3-dimethyl-2-butyl, 3, 3-dimethyl-2-butyl, and the like.
- alkoxyl refers to an alkyl group, as previously defined, attached to the parent molecule through an oxygen atom.
- C i-j alkoxy means that the alkyl moiety of the alkoxy group has i to j carbon atoms.
- alkoxy groups contain 1 to 10 carbon atoms.
- alkoxy groups contain 1 to 9 carbon atoms.
- alkoxy groups contain 1 to 8 carbon atoms, 1 to 7 carbon atoms, 1 to 6 carbon atoms, 1 to 5 carbon atoms, 1 to 4 carbon atoms, 1 to 3 carbon atoms, or 1 to 2 carbon atoms.
- C 1-6 alkoxyl examples include, but are not limited to, methoxy, ethoxy, propoxy (e.g. n-propoxy and isopropoxy) , t-butoxy, neopentoxy, n-hexoxy, and the like.
- amino refers to —NH 2 group. Amino groups may also be substituted with one or more groups such as alkyl, aryl, carbonyl or other amino groups.
- aryl refers to monocyclic and polycyclic ring systems having a total of 5 to 20 ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 12 ring members.
- aryl include, but are not limited to, phenyl, biphenyl, naphthyl, anthracyl and the like, which may bear one or more substituents. Also included within the scope of the term “aryl” , as it is used herein, is a group in which an aromatic ring is fused to one or more additional rings.
- polycyclic ring system In the case of polycyclic ring system, only one of the rings needs to be aromatic (e.g., 2, 3-dihydroindole) , although all of the rings may be aromatic (e.g., quinoline) .
- the second ring can also be fused or bridged.
- polycyclic aryl include, but are not limited to, benzofuranyl, indanyl, phthalimidyl, naphthimidyl, phenanthridinyl, or tetrahydronaphthyl, and the like.
- Aryl groups can be substituted at one or more ring positions with substituents as described above.
- cycloalkyl refers to a monovalent non-aromatic, saturated or partially unsaturated monocyclic and polycyclic ring system, in which all the ring atoms are carbon and which contains at least three ring forming carbon atoms.
- the cycloalkyl may contain 3 to 12 ring forming carbon atoms, 3 to 10 ring forming carbon atoms, 3 to 9 ring forming carbon atoms, 3 to 8 ring forming carbon atoms, 3 to 7 ring forming carbon atoms, 3 to 6 ring forming carbon atoms, 3 to 5 ring forming carbon atoms, 4 to 12 ring forming carbon atoms, 4 to 10 ring forming carbon atoms, 4 to 9 ring forming carbon atoms, 4 to 8 ring forming carbon atoms, 4 to 7 ring forming carbon atoms, 4 to 6 ring forming carbon atoms, 4 to 5 ring forming carbon atoms.
- Cycloalkyl groups may be saturated or partially unsaturated. Cycloalkyl groups may be substituted. In some embodiments, the cycloalkyl group may be a saturated cyclic alkyl group. In some embodiments, the cycloalkyl group may be a partially unsaturated cyclic alkyl group that contains at least one double bond or triple bond in its ring system. In some embodiments, the cycloalkyl group may be monocyclic or polycyclic.
- Examples of monocyclic cycloalkyl group include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, 1-cyclopent-1-enyl, 1-cyclopent-2-enyl, 1-cyclopent-3-enyl, cyclohexyl, 1-cyclohex-1-enyl, 1-cyclohex-2-enyl, 1-cyclohex-3-enyl, cyclohexadienyl, cycloheptyl, cyclooctyl, cyclononyl, cyclodecyl, cycloundecyl and cyclododecyl.
- polycyclic cycloalkyl group examples include, but are not limited to, adamantyl, norbornyl, fluorenyl, spiro-pentadienyl, spiro [3.6] -decanyl, bicyclo [1, 1, 1] pentenyl, bicyclo [2, 2, 1] heptenyl, and the like.
- cyano refers to —CN.
- halogen refers to an atom selected from fluorine (or fluoro) , chlorine (or chloro) , bromine (or bromo) and iodine (or iodo) .
- haloalkyl refers to alkyl as defined herein substituted with one or more halogen atoms.
- haloalkoxyl refers to alkoxyl as defined herein substituted with one or more halogen atoms.
- heteroatom refers to nitrogen, oxygen, or sulfur, and includes any oxidized form of nitrogen or sulfur, and any quaternized form of a basic nitrogen (including N-oxides) .
- heteroaryl refers to an aryl group having, in addition to carbon atoms, one or more heteroatoms.
- the heteroaryl group can be monocyclic. Examples of monocyclic heteroaryl include, but are not limited to, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, pyridyl, pyridazinyl, pyrimidinyl, pyrazinyl, indolizinyl, purinyl, naphthyridinyl, benzofuranyl and pteridinyl.
- the heteroaryl group also includes polycyclic groups in which a heteroaromatic ring is fused to one or more aryl, cycloaliphatic, or heterocyclyl rings, where the radical or point of attachment is on the heteroaromatic ring.
- polycyclic heteroaryl include, but are not limited to, indolyl, isoindolyl, benzothienyl, benzofuranyl, benzo [1, 3] dioxolyl, dibenzofuranyl, indazolyl, benzimidazolyl, benzthiazolyl, quinolyl, isoquinolyl, dihydroquinolinyl, dihydroisoquinolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, cinnolinyl, phthalazinyl, quinazolinyl, quinoxalinyl, 4H-quinolizinyl, carbazolyl, acridinyl
- heterocyclyl refers to a saturated or partially unsaturated carbocyclyl group in which one or more ring atoms are heteroatoms independently selected from oxygen, sulfur, nitrogen, phosphorus, and the like, the remaining ring atoms being carbon, wherein one or more ring atoms may be optionally substituted independently with one or more substituents.
- the heterocyclyl is a saturated heterocyclyl.
- the heterocyclyl is a partially unsaturated heterocyclyl having one or more double bonds in its ring system.
- the heterocyclyl may contains any oxidized form of carbon, nitrogen or sulfur, and any quaternized form of a basic nitrogen.
- Heterocyclyl also includes radicals wherein the heterocyclyl radicals are fused with a saturated, partially unsaturated, or fully unsaturated (i.e., aromatic) carbocyclic or heterocyclic ring.
- the heterocyclyl radical may be carbon linked or nitrogen linked where such is possible.
- the heterocycle is carbon linked.
- the heterocycle is nitrogen linked.
- a group derived from pyrrole may be pyrrol-1-yl (nitrogen linked) or pyrrol-3-yl (carbon linked) .
- a group derived from imidazole may be imidazol-1-yl (nitrogen linked) or imidazol-3-yl (carbon linked) .
- 3-to 12-membered heterocyclyl refers to a 3-to 12-membered saturated or partially unsaturated monocyclic or polycyclic heterocyclic ring system having 1 to 3 heteroatoms independently selected from nitrogen, oxygen, or sulfur.
- the fused, spiro and bridged ring systems are also included within the scope of this definition.
- monocyclic heterocyclyl examples include, but are not limited to oxetanyl, 1, 1-dioxothietanylpyrrolidyl, tetrahydrofuryl, tetrahydrothienyl, pyrrolyl, furanyl, thienyl, pyrazolyl, imidazolyl, triazolyl, oxazolyl, thiazolyl, piperidyl, piperazinyl, piperidinyl, morpholinyl, pyridinyl, pyrazinyl, pyrimidinyl, pyridazinyl, triazinyl, pyridonyl, pyrimidonyl, pyrazinonyl, pyrimidonyl, pyridazonyl, pyrrolidinyl, triazinonyl, and the like.
- fused heterocyclyl examples include, but are not limited to, phenyl fused ring or pyridinyl fused ring, such as quinolinyl, isoquinolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, quinoxalinyl, quinolizinyl, quinazolinyl, azaindolizinyl, pteridinyl, chromenyl, isochromenyl, indolyl, isoindolyl, indolizinyl, indazolyl, purinyl, benzofuranyl, isobenzofuranyl, benzimidazolyl, benzothienyl, benzothiazolyl, carbazolyl, phenazinyl, phenothiazinyl, phenanthridinyl, imidazo [1, 2-a] pyridinyl, [1, 2, 4] triazolo [4, 3-a
- spiro heterocyclyl examples include, but are not limited to, spiropyranyl, spirooxazinyl, and the like.
- bridged heterocyclyl examples include, but are not limited to, morphanyl, hexamethylenetetraminyl, 3-aza-bicyclo [3.1.0] hexane, 8-aza-bicyclo [3.2.1] octane, 1-aza-bicyclo [2.2.2] octane, 1, 4-diazabicyclo [2.2.2] octane (DABCO) , and the like.
- hydroxyl or “hydroxy” refers to —OH.
- partially unsaturated refers to a radical that includes at least one double or triple bond.
- partially unsaturated is intended to encompass rings having multiple sites of unsaturation, but is not intended to include aromatic (i.e., fully unsaturated) moieties.
- substitution or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and that the substitution results in a stable or chemically feasible compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc.
- an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position. It will be understood by those skilled in the art that substituents can themselves be substituted, if appropriate. Unless specifically stated as “unsubstituted” , references to chemical moieties herein are understood to include substituted variants. For example, reference to an “aryl” group or moiety implicitly includes both substituted and unsubstituted variants.
- the present disclosure provides a novel compound of Formula (I) and pharmaceutically acceptable salts thereof, synthetic methods for making the compound, pharmaceutical compositions and various uses of the disclosed compounds.
- the present disclosure provides a compound having Formula (I) :
- Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms
- Ring B is phenyl or 6-member heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl
- each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- Ring A is a 5-membered heteroaryl comprising 1 nitrogen atom.
- Ring A is a 5-membered heteroaryl comprising 2 nitrogen atom.
- Ring B is phenyl optionally substituted with one or two R 2 .
- Ring B is 6-member heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R 2 . In certain embodiments, Ring B is pyridinyl.
- R 1 is cycloalkyl optionally substituted with one or more R b .
- R 1 is C 3-8 cycloalkyl, C 3-7 cycloalkyl, C 3-6 cycloalkyl, or C 3-5 cycloalkyl, each optionally substituted with one or more R b .
- R 1 is cyclopropyl optionally substituted with one or more R b .
- R 1 is heterocyclyl optionally substituted with one or more R b .
- R 1 is C 3-8 heterocyclyl, C 3-7 heterocyclyl, C 3-6 heterocyclyl, or C 3-5 heterocyclyl, each optionally substituted with one or more R b .
- each R b is independently selected from oxo, alkyl, alkoxyl, aryl, heteroaryl or –C (O) NH-R c , wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- R 1 is cycloalkyl optionally substituted with one or more R b
- R b is –C (O) NH-R c
- R c is aryl or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- R 1 is heterocyclyl optionally substituted with one or more R b , each R b is independently selected from oxo, alkyl, alkoxyl, aryl, or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- R 1 is selected from the group consisting of:
- R 2 is halogen. In certain embodiments, R 2 is fluoro or chloro. In certain embodiments, R 2 is fluoro.
- R 2 is alkyl. In certain embodiments, R 2 is methyl.
- R 2 is haloalkyl. In certain embodiments, R 2 is trifluoromethyl.
- Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R a .
- Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R a .
- Ring C is piperidinyl or octahydroindolizinyl optionally substituted with one or more R a . In certain embodiments, Ring C is 4-piperidinyl or 7-octahydroindolizinyl optionally substituted with one or more R a .
- R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- Ring C is 5-6 membered aryl optionally substituted with one or more R a .
- Ring C is phenyl optionally substituted with one or more R a .
- each R a is independently selected from the group consisting of halogen, cyano, alkyl, C 3-8 cycloalkyl and 5-6 membered heteroaryl.
- two adjacent R a together with the atom they attached form C 5-8 cycloalkyl or 5-8 membered heterocyclyl.
- the present disclosure provides a compound having Formula (Ia) :
- the present disclosure provides a compound selected from the group consisting of:
- the present disclosure provides a compound having Formula (II) :
- Ring A is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms
- Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- W is CH, N, O, or S
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino or alkyl
- R 3 is null, hydrogen, oxo, alkyl or haloalkyl
- R 4 is NH 2 or haloalkyl
- each R b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- Ring A is phenyl
- Ring A is a 6-membered heteroaryl comprising 1 nitrogen atom.
- W is N.
- W is O or S.
- W is CH.
- Ring B is phenyl
- Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms. In certain embodiments, Ring B is pyridinyl.
- R 1 is cycloalkyl optionally substituted with one or more R b .
- R 1 is C 3-8 cycloalkyl, C 3-7 cycloalkyl, C 3-6 cycloalkyl, or C 3-5 cycloalkyl, each optionally substituted with one or more R b .
- R 1 is cyclopropyl optionally substituted with one or more R b .
- R 1 is heterocyclyl optionally substituted with one or more R b .
- R 1 is C 3-8 heterocyclyl, C 3-7 heterocyclyl, C 3-6 heterocyclyl, or C 3-5 heterocyclyl, each optionally substituted with one or more R b .
- each R b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, aryl, heteroaryl or –C (O) NH-R c , wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- R 1 is cycloalkyl optionally substituted with one or more R b
- R b is –C (O) NH-R c
- R c is aryl or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- R 1 is heterocyclyl optionally substituted with one or more R b , each R b is independently selected from oxo, alkyl, alkoxyl, aryl, or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- R 1 is selected from the group consisting of:
- R 2 is halogen. In certain embodiments, R 2 is fluoro or chloro. In certain embodiments, R 2 is fluoro.
- R 2 is alkyl. In certain embodiments, R 2 is methyl.
- R 2 is haloalkyl. In certain embodiments, R 2 is trifluoromethyl.
- Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R a .
- Ring C is 6-membered heterocyclyl optionally substituted with one or more R a .
- Ring C is piperidinyl optionally substituted with one or more R a . In certain embodiments, Ring C is 4-piperidinyl optionally substituted with one or more R a .
- R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- Ring C is 5-6 membered aryl optionally substituted with one or more R a .
- Ring C is phenyl optionally substituted with one or more R a .
- each R a is independently selected from the group consisting of halogen, cyano, alkyl, C 3-8 cycloalkyl and 5-6 membered heteroaryl.
- two adjacent R a together with the atom they attached form C 5-8 cycloalkyl or 5-8 membered heterocyclyl.
- R 3 is null.
- R 3 is hydrogen
- R 3 is oxo
- R 3 is alkyl. In certain embodiments, R 3 is C 1-6 alkyl, C 1-5 alkyl, C 1-4 alkyl or C 1-3 alkyl. In certain embodiments, R 3 is methyl or ethyl.
- R 3 is haloalkyl. In certain embodiments, R 3 is C 1-6 haloalkyl, C 1-5 haloalkyl, C 1-4 haloalkyl or C 1-3 haloalkyl. In certain embodiments, R 3 is difluoromethyl, trifluoroethyl or difluoroethyl.
- R 4 is NH 2 .
- R 4 is haloalkyl. In certain embodiments, R 4 is difluoromethyl.
- the present disclosure provides a compound selected from the group consisting of:
- Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms
- Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl
- each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- Ring A is a 5-membered heteroaryl comprising 1 nitrogen atom.
- Ring A is a 5-membered heteroaryl comprising 2 nitrogen atoms.
- Ring B is phenyl optionally substituted with one or two R 2 . In certain embodiments, Ring B is phenyl.
- Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R 2 . In certain embodiments, Ring B is pyridinyl.
- R 1 is heterocyclyl optionally substituted with one or more R b .
- R 1 is heterocyclyl optionally substituted with one or more R b , and each R b is independently selected from oxo, alkyl, alkoxyl, aryl, heteroaryl or –C (O) NH-R c , wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- R 1 is heterocyclyl optionally substituted with one or more R b , and each R b is independently selected from oxo, aryl or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- R 1 is selected from:
- R 2 is halogen. In certain embodiments, R 2 is fluoro.
- Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R a .
- Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R a .
- Ring C is piperidinyl optionally substituted with one or more R a .
- Ring C is 4-piperidinyl optionally substituted with one or more R a .
- R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- the present disclosure provides a compound selected from:
- Ring A is a 6-membered heterocyclyl or 6-membered heteroaryl, each of which comprises 1 or 2 nitrogen atoms and is optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl;
- Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2 ;
- Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a ;
- R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b ;
- R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl
- each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c , wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
- R c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- Ring A is a 6-membered heteroaryl comprising 2 nitrogen atoms and optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl.
- Ring A is a 6-membered heterocyclyl comprising 2 nitrogen atoms and optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl.
- Ring B is phenyl optionally substituted with one or two R 2 .
- Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R 2 . In certain embodiments, Ring B is pyridinyl.
- R 1 is heterocyclyl optionally substituted with one or more R b .
- each R b is independently selected from oxo, alkyl, alkoxyl, aryl, or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- R 1 is N-(2-aminoethyl)-2-aminoethyl-N-(2-aminoethyl)-2-aminoethyl-N-(2-aminoethyl)-2-aminoethyl-N-(2-aminoethyl)-2-aminoethyl-N-(2-aminoethyl)-2-aminoethyl
- Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R a .
- Ring C is piperidinyl optionally substituted with one or more R a .
- Ring C is 4-piperidinyl optionally substituted with one or more R a .
- R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- the present disclosure provides a compound selected from:
- the compound of the present disclosure may exist in a number of different forms or derivatives, including but not limited to prodrugs, soft drugs, active metabolic derivatives (active metabolites) , and their pharmaceutically acceptable salts, all within the scope of the present disclosure.
- prodrugs refers to compounds or pharmaceutically acceptable salts thereof which, when metabolized under physiological conditions or when converted by solvolysis, yield the desired active compound.
- Prodrugs include, without limitation, esters, amides, carbamates, carbonates, ureides, solvates, or hydrates of the active compound.
- the prodrug is inactive, or less active than the active compound, but may provide one or more advantageous handling, administration, and/or metabolic properties.
- some prodrugs are esters of the active compound; during metabolysis, the ester group is cleaved to yield the active drug.
- prodrugs are activated enzymatically to yield the active compound, or a compound which, upon further chemical reaction, yields the active compound.
- Prodrugs may proceed from prodrug form to active form in a single step or may have one or more intermediate forms which may themselves have activity or may be inactive. Preparation and use of prodrugs is discussed in T. Higuchi and V. Stella, “Pro-drugs as Novel Delivery Systems” , Vol. 14 of the A. C. S. Symposium Series, in Bioreversible Carriers in Drug Design, ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press, 1987; in Prodrugs: Challenges and Rewards, ed. V. Stella, R. Borchardt, M. Hageman, R. Oliyai, H. Maag, J. Tilley, Springer-Verlag New York, 2007, all of which are hereby incorporated by reference in their entirety.
- soft drug refers to compounds that exert a pharmacological effect but break down to inactive metabolites degradants so that the activity is of limited time. See, for example, “Soft drugs: Principles and methods for the design of safe drugs” , Nicholas Bodor, Medicinal Research Reviews, Vol. 4, No. 4, 449-469, 1984, which is hereby incorporated by reference in its entirety.
- metabolite e.g., active metabolite overlaps with prodrug as described above.
- metabolites are pharmacologically active compounds or compounds that further metabolize to pharmacologically active compounds that are derivatives resulting from metabolic process in the body of a subject.
- metabolites may result from oxidation, reduction, hydrolysis, amidation, deamidation, esterification, deesterification, enzymatic cleavage, and the like, of the administered compound or salt or prodrug.
- active metabolites are such pharmacologically active derivative compounds.
- the prodrug compound is generally inactive or of lower activity than the metabolic product.
- the parent compound may be either an active compound or may be an inactive prodrug.
- Prodrugs and active metabolites may be identified using routine techniques know in the art. See, e.g., Bertolini et al, 1997, J Med Chem 40: 2011-2016; Shan et al., J Pharm Sci 86: 756-757; Bagshawe, 1995, DrugDev Res 34: 220-230; Wermuth, supra.
- the term “pharmaceutically acceptable” indicates that the substance or composition is compatible chemically and/or toxicologically, with the other ingredients comprising a formulation, and/or the subjects being treated therewith.
- the term “pharmaceutically acceptable salt” includes salts that retain the biological effectiveness of the free acids and bases of the specified compound and that are not biologically or otherwise undesirable.
- Contemplated pharmaceutically acceptable salt forms include, but are not limited to, mono, bis, tris, tetrakis, and so on.
- Pharmaceutically acceptable salts are non-toxic in the amounts and concentrations at which they are administered. The preparation of such salts can facilitate the pharmacological use by altering the physical characteristics of a compound without preventing it from exerting its physiological effect. Useful alterations in physical properties include lowering the melting point to facilitate transmucosal administration and increasing the solubility to facilitate administering higher concentrations of the drug.
- Pharmaceutically acceptable salts include acid addition salts such as those containing sulfate, chloride, hydrochloride, fumarate, maleate, phosphate, sulfamate, acetate, citrate, lactate, tartrate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate, cyclohexylsulfamate and quinate.
- acid addition salts such as those containing sulfate, chloride, hydrochloride, fumarate, maleate, phosphate, sulfamate, acetate, citrate, lactate, tartrate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate, cyclohexylsulfamate and quinate.
- Pharmaceutically acceptable salts can be obtained from acids such as hydrochloric acid, maleic acid, sulfuric acid, phosphoric acid, sulfamic acid, acetic acid, citric acid, lactic acid, tartaric acid, malonic acid, methanesulfonic acid, ethanesulfonic acid, benzenesulfonic acid, p-toluenesulfonic acid, cyclohexylsulfamic acid, fumaric acid, and quinic acid.
- acids such as hydrochloric acid, maleic acid, sulfuric acid, phosphoric acid, sulfamic acid, acetic acid, citric acid, lactic acid, tartaric acid, malonic acid, methanesulfonic acid, ethanesulfonic acid, benzenesulfonic acid, p-toluenesulfonic acid, cyclohexylsulfamic acid, fumaric acid, and quinic acid.
- Pharmaceutically acceptable salts also include basic addition salts such as those containing benzathine, chloroprocaine, choline, diethanolamine, ethanolamine, t-butylamine, ethylenediamine, meglumine, procaine, aluminum, calcium, lithium, magnesium, potassium, sodium, ammonium, alkylamine, and zinc, when acidic functional groups, such as carboxylic acid or phenol are present.
- acidic functional groups such as carboxylic acid or phenol are present.
- salts can be prepared by standard techniques.
- the free-base form of a compound can be dissolved in a suitable solvent, such as an aqueous or aqueous-alcohol solution containing the appropriate acid and then isolated by evaporating the solution.
- the desired pharmaceutically acceptable salt may be prepared by any suitable method available in the art, for example, treatment of the free base with an inorganic acid, such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and the like, or with an organic acid, such as acetic acid, maleic acid, succinic acid, mandelic acid, fumaric acid, malonic acid, pyruvic acid, oxalic acid, glycolic acid, salicylic acid, a pyranosidyl acid, such as glucuronic acid or galacturonic acid, an alpha-hydroxy acid, such as citric acid or tartaric acid, an amino acid, such as aspartic acid or glutamic acid, an aromatic acid, such as benzoic acid or cinnamic acid, a sulfonic acid, such as p-toluenesulfonic acid or ethanesulfonic acid, or the like.
- an inorganic acid such as hydrochloric acid
- the desired pharmaceutically acceptable salt may be prepared by any suitable method, for example, treatment of the free acid with an inorganic or organic base, such as an amine (primary, secondary or tertiary) , an alkali metal hydroxide or alkaline earth metal hydroxide, or the like.
- an inorganic or organic base such as an amine (primary, secondary or tertiary) , an alkali metal hydroxide or alkaline earth metal hydroxide, or the like.
- suitable salts include organic salts derived from amino acids, such as L-glycine, L-lysine, and L-arginine, ammonia, primary, secondary, and tertiary amines, and cyclic amines, such as hydroxyethylpyrrolidine, piperidine, morpholine or piperazine, and inorganic salts derived from sodium, calcium, potassium, magnesium, manganese, iron, copper, zinc, aluminum and lithium.
- amino acids such as L-glycine, L-lysine, and L-arginine
- ammonia primary, secondary, and tertiary amines
- cyclic amines such as hydroxyethylpyrrolidine, piperidine, morpholine or piperazine
- inorganic salts derived from sodium, calcium, potassium, magnesium, manganese, iron, copper, zinc, aluminum and lithium.
- the compound of present disclosure can exist in unsolvated forms, solvated forms (e.g., hydrated forms) , and solid forms (e.g., crystal or polymorphic forms) , and the present disclosure is intended to encompass all such forms.
- solvate or “solvated form” refers to solvent addition forms that contain either stoichiometric or non-stoichiometric amounts of solvent. Some compounds have a tendency to trap a fixed molar ratio of solvent molecules in the crystalline solid state, thus forming a solvate. If the solvent is water the solvate formed is a hydrate; and if the solvent is alcohol, the solvate formed is an alcoholate. Hydrates are formed by the combination of one or more molecules of water with one molecule of the substance in which the water retains its molecular state as H 2 O. Examples of solvents that form solvates include, but are not limited to, water, isopropanol, ethanol, methanol, DMSO, ethyl acetate, acetic acid, and ethanolamine.
- crystal form As used herein, the terms “crystal form” , “crystalline form” , “polymorphic forms” and “polymorphs” can be used interchangeably, and mean crystal structures in which a compound (or a salt or solvate thereof) can crystallize in different crystal packing arrangements, all of which have the same elemental composition. Different crystal forms usually have different X-ray diffraction patterns, infrared spectral, melting points, density hardness, crystal shape, optical and electrical properties, stability and solubility. Recrystallization solvent, rate of crystallization, storage temperature, and other factors may cause one crystal form to dominate. Crystal polymorphs of the compounds can be prepared by crystallization under different conditions.
- tautomer or “tautomeric form” refers to structural isomers of different energies which are interconvertible via a low energy barrier.
- proton tautomers include interconversions via migration of a proton, such as keto-enol, amide-imidic acid, lactam-lactim, imine-enamine isomerizations and annular forms where a proton can occupy two or more positions of a heterocyclic system (for example, 1H-and 3H-imidazole, 1H-, 2H-and 4H-1, 2, 4-triazole, 1H-and 2H-isoindole, and 1H-and 2H-pyrazole) .
- Valence tautomers include interconversions by reorganization of some of the bonding electrons. Tautomers can be in equilibrium or sterically locked into one form by appropriate substitution.
- Compounds of the present disclosure identified by name or structure as one particular tautomeric form are intended to include other tautomeric forms unless otherwise specified.
- the present disclosure is also intended to include all isotopes of atoms in the compounds.
- Isotopes of an atom include atoms having the same atomic number but different mass numbers.
- hydrogen, carbon, nitrogen, oxygen, phosphorous, sulfur, fluorine, chlorine, bromide or iodine in the compounds of present disclosure are meant to also include their isotopes, such as but not limited to 1 H, 2 H, 3 H, 11 C, 12 C, 13 C, 14 C, 14 N, 15 N, 16 O, 17 O, 18 O, 31 P, 32 P, 32 S, 33 S, 34 S, 36 S, 17 F, 18 F, 19 F, 35 Cl, 37 Cl, 79 Br, 81 Br, 124 I, 127 I and 131 I.
- hydrogen includes protium, deuterium and tritium.
- carbon includes 12 C and 13 C.
- Synthesis of the compound provided herein, including pharmaceutically acceptable salts thereof, is illustrated in the synthetic schemes in the example.
- the compound provided herein can be prepared using any known organic synthesis techniques and can be synthesized according to any of numerous possible synthetic routes, and thus these schemes are illustrative only and are not meant to limit other possible methods that can be used to prepare the compounds provided herein. Additionally, the steps in the schemes are for better illustration and can be changed as appropriate.
- the embodiments of the compound in examples were synthesized for the purposes of research and potentially submission to regulatory agencies.
- the reactions for preparing the compound of the present disclosure can be carried out in suitable solvents, which can be readily selected by one skilled in the art of organic synthesis.
- suitable solvents can be substantially non-reactive with the starting materials (reactants) , the intermediates, or products at the temperatures at which the reactions are carried out, e.g. temperatures that can range from the solvent’s freezing temperature to the solvent's boiling temperature.
- a given reaction can be carried out in one solvent or a mixture of more than one solvent.
- suitable solvents for a particular reaction step can be selected by one skilled in the art.
- Preparation of the compound of the present disclosure can involve the protection and deprotection of various chemical groups.
- the need for protection and deprotection, and the selection of appropriate protecting groups, can be readily determined by one skilled in the art.
- the chemistry of protecting groups can be found, for example, in T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, 3rd Ed., Wiley &Sons, Inc., New York (1999) , in P. Kocienski, Protecting Groups, Georg Thieme Verlag, 2003, and in Peter G.M. Wuts, Greene's Protective Groups in Organic Synthesis, 5 th Edition, Wiley, 2014, all of which are incorporated herein by reference in its entirety.
- Reactions can be monitored according to any suitable method known in the art.
- product formation can be monitored by spectroscopic means, such as nuclear magnetic resonance spectroscopy (e.g. 1 H or 13 C) , infrared spectroscopy, spectrophotometry (e.g. UV-visible) , mass spectrometry, or by chromatographic methods such as high performance liquid chromatography (HPLC) , liquid chromatography-mass spectroscopy (LCMS) , or thin layer chromatography (TLC) .
- HPLC high performance liquid chromatography
- LCMS liquid chromatography-mass spectroscopy
- TLC thin layer chromatography
- Compounds can be purified by one skilled in the art by a variety of methods, including high performance liquid chromatography (HPLC) ( “Preparative LC-MS Purification: Improved Compound Specific Method Optimization” Karl F. Blom, Brian Glass, Richard Sparks, Andrew P. Combs J. Combi. Chem. 2004, 6 (6) ,
- the known starting materials of the present disclosure can be synthesized by using or according to the known methods in the art, or can be purchased from commercial suppliers. Unless otherwise noted, analytical grade solvents and commercially available reagents were used without further purification.
- the reactions of the present disclosure were all done under a positive pressure of nitrogen or argon or with a drying tube in anhydrous solvents, and the reaction flasks were typically fitted with rubber septa for the introduction of substrates and reagents via syringe. Glassware was oven dried and/or heat dried.
- the Examples section below shows synthetic route for preparing the compound of the present disclosure as well as key intermediates. Those skilled in the art will appreciate that other synthetic routes may be used to synthesize the inventive compounds. Although specific starting materials and reagents are depicted, other starting materials and reagents can be easily substituted to provide a variety of derivatives and/or reaction conditions. In addition, many of the compounds prepared by the methods described below can be further modified in light of this disclosure using conventional chemistry well known to those skilled in the art.
- compositions comprising the compound of the present disclosure, or a pharmaceutically acceptable salt thereof.
- composition comprising the compound of the present disclosure, or a pharmaceutically acceptable salt thereof, and at least one pharmaceutical acceptable excipient.
- composition refers to a formulation containing the molecule or compound of the present disclosure in a form suitable for administration to a subject.
- the term “pharmaceutically acceptable excipient” means an excipient that is useful in preparing a pharmaceutical composition that is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes excipient that is acceptable for veterinary use as well as human pharmaceutical use.
- a “pharmaceutically acceptable excipient” as used herein includes both one and more than one such excipient.
- pharmaceutically acceptable excipient also encompasses “pharmaceutically acceptable carrier” and “pharmaceutically acceptable diluent” .
- Solvents are generally selected based on solvents recognized by persons skilled in the art as safe to be administered to a mammal including humans.
- safe solvents are non-toxic aqueous solvents such as water and other non-toxic solvents that are soluble or miscible in water.
- Suitable aqueous solvents include water, ethanol, propylene glycol, polyethylene glycols (e.g., PEG 400, PEG 300) , etc. and mixtures thereof.
- suitable excipients may include buffers such as phosphate, citrate and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol) ; low molecular weight (less than about 10 residues) polypeptides; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine, or lysine; monosaccharides, dis
- suitable excipients may include one or more stabilizing agents, surfactants, wetting agents, lubricating agents, emulsifiers, suspending agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants, sweeteners, perfuming agents, flavoring agents and other known additives to provide an elegant presentation of the drug (i.e., a compound of the present disclosure or pharmaceutical composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e., medicament) .
- stabilizing agents i.e., surfactants, wetting agents, lubricating agents, emulsifiers, suspending agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants, sweeteners, perfuming agents, flavoring agents and other known additives to provide an elegant presentation of the drug (i.e., a compound of the present disclosure or pharmaceutical composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e., medicament
- the active pharmaceutical ingredients may also be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsules and poly- (methylmethacylate) microcapsules, respectively, in colloidal drug delivery systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions.
- colloidal drug delivery systems for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules
- a “liposome” is a small vesicle composed of various types of lipids, phospholipids and/or surfactant which is useful for delivery of a drug (such as the compounds disclosed herein and, optionally, a chemotherapeutic agent) to a mammal including humans.
- a drug such as the compounds disclosed herein and, optionally, a chemotherapeutic agent
- the components of the liposome are commonly arranged in a bilayer formation, similar to the lipid arrangement of biological membranes.
- compositions provided herein can be in any form that allows for the composition to be administered to a subject, including, but not limited to a human, and formulated to be compatible with an intended route of administration.
- compositions provided herein may be supplied in bulk or in unit dosage form depending on the intended administration route.
- powders, suspensions, granules, tablets, pills, capsules, gelcaps, and caplets may be acceptable as solid dosage forms
- emulsions, syrups, elixirs, suspensions, and solutions may be acceptable as liquid dosage forms.
- emulsions and suspensions may be acceptable as liquid dosage forms
- solutions, sprays, dry powders, and aerosols may be acceptable dosage form.
- powders, sprays, ointments, pastes, creams, lotions, gels, solutions, and patches may be acceptable dosage form.
- pessaries, tampons, creams, gels, pastes, foams and spray may be acceptable dosage form.
- the quantity of active ingredient in a unit dosage form of composition is a therapeutically effective amount and is varied according to the particular treatment involved.
- therapeutically effective amount refers to an amount of a molecule, compound, or composition comprising the molecule or compound to treat, ameliorate, or prevent an identified disease or condition, or to exhibit a detectable therapeutic or inhibitory effect. The effect can be detected by any assay method known in the art.
- the precise effective amount for a subject will depend upon the subject’s body weight, size, and health; the nature and extent of the condition; the rate of administration; the therapeutic or combination of therapeutics selected for administration; and the discretion of the prescribing physician.
- Therapeutically effective amounts for a given situation can be determined by routine experimentation that is within the skill and judgment of the clinician.
- compositions of the present disclosure may be in a form of formulation for oral administration.
- the pharmaceutical compositions of the present disclosure may be in the form of tablet formulations.
- suitable pharmaceutically- acceptable excipients for a tablet formulation include, for example, inert diluents such as lactose, sodium carbonate, calcium phosphate or calcium carbonate, granulating and disintegrating agents such as corn starch or algenic acid; binding agents such as starch; lubricating agents such as magnesium stearate, stearic acid or talc; preservative agents such as ethyl or propyl p-hydroxybenzoate, and anti-oxidants, such as ascorbic acid.
- Tablet formulations may be uncoated or coated either to modify their disintegration and the subsequent absorption of the active ingredient within the gastrointestinal tract, or to improve their stability and/or appearance, in either case using conventional coating agents and procedures well known in the art.
- the pharmaceutical compositions of the present disclosure may be in a form of hard gelatin capsules in which the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin, or as soft gelatin capsules in which the active ingredient is mixed with water or an oil such as peanut oil, liquid paraffin, or olive oil.
- an inert solid diluent for example, calcium carbonate, calcium phosphate or kaolin
- water or an oil such as peanut oil, liquid paraffin, or olive oil.
- the pharmaceutical compositions of the present disclosure may be in the form of aqueous suspensions, which generally contain the active ingredient in finely powdered form together with one or more suspending agents, such as sodium carboxymethylcellulose, methylcellulose, hydroxypropylmethylcellulose, sodium alginate, polyvinyl-pyrrolidone, gum tragacanth and gum acacia; dispersing or wetting agents such as lecithin or condensation products of an alkylene oxide with fatty acids (for example polyoxethylene stearate) , or condensation products of ethylene oxide with long chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation products of ethylene oxide with partial esters derived from fatty acids and a hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides, for example polyethylene sorbitan monooleate.
- suspending agents such as sodium
- the aqueous suspensions may also contain one or more preservatives (such as ethyl or propyl p-hydroxybenzoate, anti-oxidants (such as ascorbic acid) , coloring agents, flavoring agents, and/or sweetening agents (such as sucrose, saccharine or aspartame) .
- preservatives such as ethyl or propyl p-hydroxybenzoate, anti-oxidants (such as ascorbic acid) , coloring agents, flavoring agents, and/or sweetening agents (such as sucrose, saccharine or aspartame) .
- the pharmaceutical compositions of the present disclosure may be in the form of oily suspensions, which generally contain suspended active ingredient in a vegetable oil (such as arachis oil, olive oil, sesame oil or coconut oil) or in a mineral oil (such as liquid paraffin) .
- the oily suspensions may also contain a thickening agent such as beeswax, hard paraffin or cetyl alcohol. Sweetening agents such as those set out above, and flavoring agents may be added to provide a palatable oral preparation.
- These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid.
- the pharmaceutical compositions of the present disclosure may be in the form of oil-in-water emulsions.
- the oily phase may be a vegetable oil, such as olive oil or arachis oil, or a mineral oil, such as for example liquid paraffin or a mixture of any of these.
- Suitable emulsifying agents may be, for example, naturally-occurring gums such as gum acacia or gum tragacanth, naturally-occurring phosphatides such as soya bean, lecithin, esters or partial esters derived from fatty acids and hexitol anhydrides (for example sorbitan monooleate) and condensation products of the said partial esters with ethylene oxide such as polyoxyethylene sorbitan monooleate.
- the emulsions may also contain sweetening, flavoring and preservative agents.
- the pharmaceutical compositions provided herein may be in the form of syrups and elixirs, which may contain sweetening agents such as glycerol, propylene glycol, sorbitol, aspartame or sucrose, a demulcent, a preservative, a flavoring and/or coloring agent.
- sweetening agents such as glycerol, propylene glycol, sorbitol, aspartame or sucrose, a demulcent, a preservative, a flavoring and/or coloring agent.
- compositions of the present disclosure may be in a form of formulation for injection administration.
- the pharmaceutical compositions of the present disclosure may be in the form of a sterile injectable preparation, such as a sterile injectable aqueous or oleaginous suspension.
- a sterile injectable preparation such as a sterile injectable aqueous or oleaginous suspension.
- This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents, which have been mentioned above.
- the sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or solvent, such as a solution in 1, 3-butanediol or prepared as a lyophilized powder.
- a non-toxic parenterally acceptable diluent or solvent such as a solution in 1, 3-butanediol or prepared as a lyophilized powder.
- acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution.
- sterile fixed oils may conventionally be employed as a solvent or suspending medium.
- any bland fixed oil may be employed including synthetic mono-or diglycerides.
- fatty acids such as oleic acid may likewise be used in the preparation of injectables.
- compositions of the present disclosure may be in a form of formulation for inhalation administration.
- the pharmaceutical compositions of the present disclosure may be in the form of aqueous and nonaqueous (e.g., in a fluorocarbon propellant) aerosols containing any appropriate solvents and optionally other compounds such as, but not limited to, stabilizers, antimicrobial agents, antioxidants, pH modifiers, surfactants, bioavailability modifiers and combinations of these.
- the carriers and stabilizers vary with the requirements of the particular compound, but typically include nonionic surfactants (Tweens, Pluronics, or polyethylene glycol) , innocuous proteins like serum albumin, sorbitan esters, oleic acid, lecithin, amino acids such as glycine, buffers, salts, sugars or sugar alcohols.
- compositions of the present disclosure may be in a form of formulation for topical or transdermal administration.
- the pharmaceutical compositions provided herein may be in the form of creams, ointments, gels and aqueous or oily solutions or suspensions, which may generally be obtained by formulating an active ingredient with a conventional, topically acceptable excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
- a conventional, topically acceptable excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
- compositions provided herein may be formulated in the form of transdermal skin patches that are well known to those of ordinary skill in the art.
- excipients and carriers are generally known to those skilled in the art and are thus included in the present disclosure.
- excipients and carriers are described, for example, in “Remingtons Pharmaceutical Sciences” Mack Pub. Co., New Jersey (1991) , in “Remington: The Science and Practice of Pharmacy” , Ed. University of the Sciences in Philadelphia, 21 st Edition, LWW (2005) , which are incorporated herein by reference.
- the pharmaceutical compositions of the present disclosure can be formulated as a single dosage form.
- the amount of the compounds provided herein in the single dosage form will vary depending on the subject treated and particular mode of administration.
- the pharmaceutical compositions of the present disclosure can be formulated so that a dosage of between 0.001-1000 mg/kg body weight/day, for example, 0.01-800 mg/kg body weight/day, 0.01-700 mg/kg body weight/day, 0.01-600 mg/kg body weight/day, 0.01-500 mg/kg body weight/day, 0.01-400 mg/kg body weight/day, 0.01-300 mg/kg body weight/day, 0.1-200 mg/kg body weight/day, 0.1-150 mg/kg body weight/day, 0.1-100 mg/kg body weight/day, 0.5-100 mg/kg body weight/day, 0.5-80 mg/kg body weight/day, 0.5-60 mg/kg body weight/day, 0.5-50 mg/kg body weight/day, 1-50 mg/kg body weight/day, 1-45 mg/kg body weight/day, 1-40 mg/kg body weight/day, 1-35 mg/kg body weight/day, 1-30 mg/kg body weight/day, 1-25 mg/kg body weight/day of the
- dosage levels below the lower limit of the aforesaid range may be more than adequate, while in other cases still larger doses may be employed without causing any harmful side effect, provided that such larger doses are first divided into several small doses for administration throughout the day.
- routes of administration and dosage regimes see Chapter 25.3 in Volume 5 of Comprehensive Medicinal Chemistry (Corwin Hansch; Chairman of Editorial Board) , Pergamon Press 1990, which is specifically incorporated herein by reference.
- the pharmaceutical compositions of the present disclosure can be formulated as short-acting, fast-releasing, long-acting, and sustained-releasing. Accordingly, the pharmaceutical formulations of the present disclosure may also be formulated for controlled release or for slow release.
- compositions comprising one or more molecules or compounds of the present disclosure or pharmaceutically acceptable salts thereof and a veterinary carrier.
- Veterinary carriers are materials useful for the purpose of administering the composition and may be solid, liquid or gaseous materials which are otherwise inert or acceptable in the veterinary art and are compatible with the active ingredient. These veterinary compositions may be administered parenterally, orally or by any other desired route.
- an article for distribution can include a container having deposited therein the compositions in an appropriate form.
- suitable containers are well known to those skilled in the art and include materials such as bottles (plastic and glass) , sachets, ampoules, plastic bags, metal cylinders, and the like.
- the container may also include a tamper-proof assemblage to prevent indiscreet access to the contents of the package.
- the container has deposited thereon a label that describes the contents of the container. The label may also include appropriate warnings.
- compositions may also be packaged in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water, for injection immediately prior to use.
- sterile liquid carrier for example water
- Extemporaneous injection solutions and suspensions are prepared from sterile powders, granules and tablets of the kind previously described.
- the compound of Formula (I) or pharmaceutically acceptable salts thereof are capable of inhibiting the activity of a TAM kinase.
- the compound of the disclosure can be used to inhibit activity of a TAM kinase in a cell or in a subject in need of inhibition of the kinases by administering an inhibiting amount of the compound of the disclosure to the cell or subject.
- the inhibitory properties of the compound may be demonstrated using the test procedures set out herein.
- an ex vivo cell refers to a cell that is in vitro, ex vivo or in vivo.
- an ex vivo cell can be part of a tissue sample excised from an organism such as a mammal.
- an in vitro cell can be a cell in a cell culture.
- an in vivo cell is a cell living in an organism such as a mammal.
- a “subject” refers to a human and a non-human animal.
- a non-human animal include all vertebrates, e.g., mammals, such as non-human primates (particularly higher primates) , dog, rodent (e.g., mouse or rat) , guinea pig, cat, and non-mammals, such as birds, amphibians, reptiles, etc.
- the subject is a human.
- the subject is an experimental animal or animal suitable as a disease model.
- the compound of the disclosure or pharmaceutically acceptable salts thereof are selective for the TAM kinases over one or more of other kinases.
- the selectivity is 2-fold or more, 3-fold or more, 5-fold or more, 10-fold or more, 25-fold or more, 50-fold or more, or 100-fold or more.
- the compound of the disclosure or pharmaceutically acceptable salts thereof can inhibit one or more of AXL, MER and TYRO3. In some embodiments, the compound of the disclosure or pharmaceutically acceptable salts thereof are selective for one TAM kinase over another.
- the term “selective” means that the compound binds to or inhibits a TAM kinase with greater affinity or potency, compared to a reference enzyme, such as another TAM kinase or kinases other than TAM kinases.
- the compound of the disclosure or pharmaceutically acceptable salts thereof can be selective for AXL over MER and TYRO3, selective for MER over AXL and TYRO3, or selective for AXL and MER over TYRO3.
- the compound of the disclosure or pharmaceutically acceptable salts thereof inhibit all of the TAM family members (e.g., AXL, MER and TYRO3) .
- the compound of the disclosure or pharmaceutically acceptable salts thereof can be selective for AXL and MER over TYRO3 and other kinases.
- the present disclosure provides a method for inhibiting a TAM kinase, which comprises contacting the TAM kinase with the compound provided herein, or a pharmaceutically acceptable salt thereof.
- the present disclosure provides a method for inhibiting AXL and MER kinases, which comprises contacting the AXL and MER kinases with the compound provided herein, or a pharmaceutically acceptable salt thereof.
- the term “contacting” refers to the bringing together of indicated moieties in an in vitro system or an in vivo system.
- “contacting” the TAM kinase with the compound provided herein or a pharmaceutically acceptable salt thereof includes the administration of the compound provided herein, or a pharmaceutically acceptable salt thereof to a subject having the TAM kinase, as well as, for example, introducing the compound provided herein or a pharmaceutically acceptable salt thereof into a sample containing a cellular or purified preparation containing the TAM kinase.
- the compound of the present disclosure or pharmaceutically acceptable salts thereof has an inhibitory activity against TAM kinases, they are useful in the treatment (therapeutic or prophylactic) of conditions or diseases associated with TAM kinases.
- beneficial or desired clinical results include, but are not limited to, alleviation of symptoms, diminishment of extent of disease, stabilized (i.e., not worsening) state of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total) , whether detectable or undetectable. “Therapy” can also mean prolonging survival as compared to expected survival if not receiving it. Those in need of therapy include those already with the condition or disorder as well as those prone to have the condition or disorder or those in which the condition or disorder is to be prevented.
- prophylaxis or “prophylactic” is intended to have its normal meaning and includes primary prophylaxis to prevent the development of the disease and secondary prophylaxis whereby the disease has already developed and the patient is temporarily or permanently protected against exacerbation or worsening of the disease or the development of new symptoms associated with the disease.
- the conditions or diseases associated with TAM kinases include proliferative disorders such as cancers, kidney diseases, immune system diseases, circulatory system diseases and viral diseases.
- the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of cancer, for example but not limited to leukemia (e.g., acute myeloid leukemia, chronic myeloid leukemia, acute lymphatic leukemia) , melanoma, glioma, lymphoma (e.g., chronic lymphocytic lymphoma, B-cell lymphoma, cutaneous T-cell lymphoma, Hodgkin’s or non-Hodgkin’s lymphoma, hairy cell lymphoma, chronic myelogenic lymphoma, acute lymphoblastic lymphoma, AIDS-related lymphomas, and Burkitt’s lymphoma) , bladder cancer, breast cancer, cervical cancer, colorectal cancer, small intestine cancer, large intestine cancer, colon cancer, rectal cancer, cancer of the anus, endometrial cancer, gastric cancer, head and neck cancer (e.g., cancers of the larynx, hypo
- exocrine pancreatic carcinoma stomach cancer, thyroid cancer, parathyroid cancer, skin cancer (e.g., squamous cell carcinoma, Kaposi sarcoma, Merkel cell skin cancer) , and brain cancer (e.g., astrocytoma, medulloblastoma, ependymoma, neuro-ectodermal tumors, pineal tumors) .
- skin cancer e.g., squamous cell carcinoma, Kaposi sarcoma, Merkel cell skin cancer
- brain cancer e.g., astrocytoma, medulloblastoma, ependymoma, neuro-ectodermal tumors, pineal tumors
- the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of kidney diseases, for example but not limited to glomerular nephritis, chronic nephritis, IgA nephritis, sequential (secondary) nephritis, nephrosis nephritis, acute renal failure, chronic renal failure, diabetic nephropathy, gouty nephropathy, interstitial nephritis, and nephro-pyelitis.
- kidney diseases for example but not limited to glomerular nephritis, chronic nephritis, IgA nephritis, sequential (secondary) nephritis, nephrosis nephritis, acute renal failure, chronic renal failure, diabetic nephropathy, gouty nephropathy, interstitial nephritis, and nephro-pyelitis.
- the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of immune system disease, for example but not limited to psoriasis and rheumatoid arthritis.
- the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of circulatory system diseases, for example but not limited to atherosclerosis and thrombosis.
- the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of viral diseases such as viral infections.
- viruses causing infections include but are not limited to human immunodeficiency virus, papillomavirus, influenza virus, hepatitis A, B, C or D viruses, adenovirus, poxvirus, herpes viruses (e.g., N7N, HSV-1, HAV-6, HSVII, and CMV, Epstein Barr virus) , human cytomegalovirus, severe acute respiratory syndrome virus, respiratory syncytial virus, ebola virus, Marburg virus, measles virus, flaviviruses (e.g., West Nile, dengue, tick-home encephalitis, yellow fever, Zika) , echovirus, rhinovirus, coxsackie virus, comovirus, mumpsvirus, rotavirus, rubella virus, parvovirus, vaccinia virus, HTLV virus, dengue virus, molluscum virus, polio
- the compound provided herein or pharmaceutically acceptable salts thereof can be used as a metastasis suppressing agent to cancer cell.
- the compound provided herein or pharmaceutically acceptable salts thereof may be used in combination with one or more additional pharmaceutical agents or therapies in order to supplement and/or enhance the preventive and/or therapeutic effect of the compound, to improve the kinetics, improvement of absorption, and reduction of the dose of the compound; and/or to eliminate the side effects of the compound.
- the compound provided herein or pharmaceutically acceptable salts thereof can be administered simultaneously (as a single preparation or separate preparation) or sequentially to the additional pharmaceutical agents or therapies.
- the compound provided herein or pharmaceutically acceptable salts thereof may be administered before the additional pharmaceutical agents or therapies.
- the additional pharmaceutical agents or therapies may be administered before the compound provided herein or pharmaceutically acceptable salts.
- the method for the administration of these pharmaceutical agents or therapies may be the same as each other or different from each other.
- Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of cancer include, but are not limited to chemotherapeutic agents, targeted cancer therapies, immunotherapy or radiation therapy, for example, alkylating agents (e.g., nitrogen mustard N-oxide hydrochloride, cyclophosphamide, ifosfa-mide, melphalan, thiotepa, carboquone, busulfan, nimustine hydrochloride, dacarbazine, ranimustine, carmustine, chlorambucil, bendamustine, and mechlorethamine) , antimetabolites (e.g., folic acid antagonists, pyrimidine analogs, purine analogs and adenosine deaminase inhibitors) , anticancer antibiotics (e.g., actinomycin D, mitomycin C, daunorubicin hydrochloride, doxorubicin hydrochlor
- anti-CD52 antibodies e.g., alemtuzumab
- anti-PD-1 antibodies e.g., nivolumab, pembrolizumab
- an adoptive cell transfer an angiogenesis inhibitor, Bacillus Calmette-Guerin therapy, biochemotherapy, a cancer vaccine, a chimeric antigen receptor (CAR) T-cell therapy, a cytokine therapy, gene therapy, an immune checkpoint modulator, an immunoconjugate, a radioconjugate, an oncolytic virus therapy, a targeted drug therapy, G-CSF formulations (e.g., pegfilgrastim, filgrastim, lenograstim, and nartograstim) , acute promyelocytic leukemia differentiation-inducing agents, topoisomerase inhibitors (e.g., topotecan, teniposide, irinotecan, and sobuzoxane) , aromatase inhibitors (
- Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of kidney diseases include but are not limited to steroids, immunosuppressants (e.g., azathioprine, ascomycin, everolimus, salazosulfapyridine, cyclosporine, cyclophosphamide, sirolimus, tacrolimus, bucillamine, methotrexate, and leflunomide) , angiotensin II antagonistic drugs (e.g., losartan, candesartan, valsartan, irbesartan, olm-esartan, telmisartan) , angiotensin-converting enzyme inhibitors (e.g., alacepril, imidapril hydrochloride, quinapril hydrochloride, temocapril hydrochloride, delapril hydrochloride, benazepril hydrochloride, captopril, tran
- Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of immune system diseases include but are not limited to immunosuppressants, steroid, diseasemodifying anti-rheumatic drugs, prostaglandins, prostaglandin synthase inhibitors, phosphodiesterase inhibitors, metalloprotease inhibitors, anti-cytokine protein formulations such as anti-TNF- ⁇ formulations, anti-IL-1 formulations, and anti-IL-6 formulation, cytokine inhibitors, and nonsteroidal anti-inflammatory agents.
- Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of circulatory system diseases include but are not limited to antiplatelet drugs, angiotensin II antagonistic drugs, angiotensin-converting enzyme inhibitors, HMG-CoA reductase inhibitors, and thiazolidine derivatives.
- the compound provided herein or pharmaceutically acceptable salts thereof are used in combination with radiation therapy or surgeries.
- Radiation is commonly delivered internally (implantation of radioactive material near cancer site) or externally from a machine that employs photon (x-ray or gamma-ray) or particle radiation.
- the combination therapy further comprises radiation treatment
- the radiation treatment may be conducted at any suitable time so long as a beneficial effect from the co-action of the combination of the therapeutic agents and radiation treatment is achieved.
- the present disclosure relates to labeled compounds provided herein (radio-labeled, fluorescent-labeled, and the like. ) that would be useful not only in imaging techniques but also in assays, both in vitro and in vivo, for localizing and quantitating TAM kinases in tissue samples, including human, and for identifying TAM kinase ligands by inhibition binding of a labeled compound. Accordingly, the present disclosure includes TAM kinase assays that contain such labeled compounds.
- the present disclosure further includes isotopically-labeled compounds provided herein.
- An “isotopically” or “radio-labeled” compound is a compound provided herein where one or more atoms are replaced or substituted by an atom having an atomic mass or mass number different from the atomic mass or mass number typically found in nature (i.e., naturally occurring) .
- the radionuclide that is incorporated in the instant radio-labeled compounds will depend on the specific application of that radio-labeled compound. For example, for in vitro TAM kinases labeling and competition assays, compounds that incorporate 3 H, 14 C, 82 Br, 125 I, 131 I, or 35 S will generally be most useful.
- radio-imaging applications 11 C, 18 F, 125 I, 123 I, 124 I, 131 I, 75 Br, 76 Br or 77 Br will generally be most useful. Synthetic methods for incorporating radio-isotopes into organic compounds are applicable to the compouns provided herein and are well known in the art.
- a radio-labeled compound provided herein can be used in a screening assay to identify/evaluate compounds.
- a newly synthesized or identified compound i.e., test compound
- Step 3 1- [4- (3-bromo-4- ⁇ [ (2, 4-dimethoxyphenyl) methyl] amino ⁇ -1H-pyrazolo [4, 3-c] pyridin-1-yl) piperidin-1-yl] -2-methylpropan-1-one
- Step 4 1- ⁇ 4- [3- (4-aminophenyl) -4- ⁇ [ (2, 4-dimethoxyphenyl) methyl] amino ⁇ -1H-pyrazolo [4, 3-c] pyridin-1-yl] piperidin-1-yl ⁇ -2-methylpropan-1-one
- Step 5 N- [4- (4- ⁇ [ (2, 4-dimethoxyphenyl) methyl] amino ⁇ -1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl] -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 6 N- (4- ⁇ 4-amino-1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl ⁇ phenyl) -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 1 1- (4- (3- (4-amino-2-fluorophenyl) -4- ( (2, 4-dimethoxybenzyl) amino) -1H-pyrazolo [4, 3-c] pyridin-1-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 2 N- (4- (4- ( (2, 4-dimethoxybenzyl) amino) -1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 3 N- (4- (4-amino-1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 4 1- (4-aminophenyl) -3-bromoimidazo [1, 5-a] pyrazin-8-amine
- Step 6 1- (4- (8-amino-1- (4-aminophenyl) imidazo [1, 5-a] pyrazin-3-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 7 N- (4- (8-amino-3- (1-isobutyrylpiperidin-4-yl) imidazo [1, 5-a] pyrazin-1-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- reaction mixture was diluted with water (50.0 mL) , extracted with EtOAc (20.0 mL *3) , the combined organic layer was washed with brine (40.0 mL) , dried over Na 2 SO 4 , filtered and concentrated under reduced pressure to give a residue.
- Step 4. 8- (4-aminophenyl) -6-bromo-N- (4-methoxybenzyl) pyrrolo [1, 2-a] pyrazin-1-amine
- Step 6 1- (4- (8- (4-aminophenyl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 7 1- (4- (1-amino-8- (4-aminophenyl) pyrrolo [1, 2-a] pyrazin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 8 N- (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- the filtrate was purified by Prep-HPLC (column: Phenomenex C18 75 *30 mm *3 um; mobile phase: [water (FA) -ACN] ; B%: 18%-48%, 7 min) .
- the residue was purified by Prep-HPLC (column: Welch Ultimate XB-SiOH 250 *50 *10 um; mobile phase: [Hexane-EtOH] ; B%: 30%-70%, 15 min) to get the desired product Compound 15 (7.46 mg, 10.7 ⁇ mol, 4.51%yield, 91.4%purity) .
- Step 1 4-ethoxy-1- (4-fluorophenyl) -N- (4- (6- (1-isobutyrylpiperidin-4-yl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -2-oxo-1, 2-dihydropyridine-3-carboxamide
- Step 3 1- (4- (3-amino-5-chloro- [1, 2, 4] triazolo [4, 3-a] pyridin-7-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
- Step 4 1- (4- (3-amino-5- (4-aminophenyl) - [1, 2, 4] triazolo [4, 3-a] pyridin-7-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
- Step 5 1- (4- (3-amino-5- (4-aminophenyl) imidazo [1, 2-a] pyridin-7-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 6 N- (4- (3-amino-7- (1-isobutyrylpiperidin-4-yl) - [1, 2, 4] triazolo [4, 3-a] pyridin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 7 4- (4-aminophenyl) -6-bromo-1-methyl-1H-indazol-3-amine
- Step 8 1- (4- (3-amino-4- (4-aminophenyl) -1-methyl-1H-indazol-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
- Step 9 1- (4- (3-amino-4- (4-aminophenyl) -1-methyl-1H-indazol-6-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 10 N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- reaction mixture was diluted with water (500 mL) , extracted with EtOAc (150 mL *3) , the combined organic layer was washed with brine (300 mL) , dried over Na 2 SO 4 , filtered and concentrated under reduced pressure to get the desired product ethyl compound 23-4 (6.00 g, 21.5 mmol, 94.4%yield) as yellow oil.
- Step 4 ethyl 4-chloro-6- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylate
- Step 7 ethyl 6- (1-isobutyrylpiperidin-4-yl) -4- (4- (1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamido) phenyl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylate
- Step 8 6- (1-isobutyrylpiperidin-4-yl) -4- (4- (1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamido) phenyl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylic acid
- Step 9 N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) - [1, 2, 3] triazolo [1, 5-a] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 8 1- (4- (3-amino-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
- Step 9 1- (4- (3-amino-4- (4-aminophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 10 N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 3 4- (methylthio) -2-oxo-6- (piperidin-4-yl) -1, 2-dihydropyridine-3-carbonitrile
- Step 4 (1-isobutyrylpiperidin-4-yl) -4- (methylthio) -2-oxo-1, 2-dihydropyridine-3-carbonitrile
- Step 6 1- (4- (3-amino-4-bromo-1H-pyrazolo [4, 3-c] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 7 N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
- Step 4 1- (4- (3-amino-4- (4-aminophenyl) -1-ethyl-1H-indazol-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
- Step 5 1- (4- (3-amino-4- (4-aminophenyl) -1-ethyl-1H-indazol-6-yl) piperidin-1-yl) -2-methylpropan-1-one
- Step 7 N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1- (4-fluorophenyl) -4, 5-dimethyl-2-oxo-1, 2-dihydropyridine-3-carboxamide
- Step 7 N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1-ethyl-4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxamide
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Abstract
The present disclosure relates to pyrazolopyridine compounds useful as inhibitors of TAM kinases, in particular as intibitors of AXL and MER kinases, as well as pharmaceutical compositions comprising these compounds and methods of treatment by administration of these compounds or the pharmaceutical compositions.
Description
FIELD OF THE DISCLOSURE
The present disclosure generally relates to pyrazolopyridine compounds useful as inhibitors of TAM kinases, in particular as intibitors of AXL and MER kinases, as well as pharmaceutical compositions comprising these compounds and methods of treatment by administration of these compounds or the pharmaceutical compositions.
BACKGROUND OF THE DISCLOSURE
Receptor tyrosine kinases (RTK) are cell-surface transmembrane receptors that contain regulated kinase activity within their cytoplasmic domain and play an important role in signal transduction in both normal and malignant cells. Overexpression or ectopic expression of the TAM receptors has been detected in a wide array of human cancers.
AXL and MER are two members of the TAM (TYRO3-AXL-MER) family of receptor tyrosine kinases, which, when activated, can regulate tumor cell survival, proliferation, migration and invasion, angiogenesis, and tumor-host interactions. An increasing body of evidence strongly suggests that these receptors play major roles in resistance to targeted therapies and conventional cytotoxic agents. In addition, it has been shown that both AXL and MER are critical regulators of innate immunity, phagocytosis, and immune-suppressive activity. Therefore, targeting both AXL and MER kinases may not only impact the growth, survival and malignant progression of neoplastic cells directly, but also has the potential to restore and enhance host immunity against cancers.
Accordingly, there is a need for compounds for inhibition of TAM kinases, in particular AXL and MER kinases.
SUMMARY OF THE DISCLOSURE
The present disclosure provides compounds or pharmaceutically acceptable salts thereof, which are capable of inhibiting TAM kinases, in particular AXL and MER kinases. Methods for use of such compounds for treatment of various diseases or conditions, such as cancer, are also provided.
In one aspect, the present disclosure provides a compound having Formula (I) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms;
Ring B is phenyl or 6-member heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In another aspect, the present disclosure provides a compound having Formula (Ia) :
or a pharmaceutically acceptable salt thereof.
In a further aspect, the present disclosure provides a compound selected from the group consisting of:
or a pharmaceutically acceptable salt thereof.
In another aspect, the present disclosure provides a compound having Formula (II) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms;
Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
W is CH, N, O, or S;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino or alkyl;
R
3 is null, hydrogen, oxo, alkyl or haloalkyl;
R
4 is NH
2 or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In a further aspect, the present disclosure provides a compound selected from the group consisting of:
or a pharmaceutically acceptable salt thereof.
In a further aspect, the present disclosure provides a compound having Formula (III) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms;
Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In a further aspect, the present disclosure provides a compound selected from:
or a pharmaceutically acceptable salt thereof.
In another aspect, the present disclosure provides a compound having Formula (IV) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is a 6-membered heterocyclyl or 6-membered heteroaryl, each of which comprises 1 or 2 nitrogen atoms and is optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl;
Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In a further aspect, the present disclosure provides a compound selected from:
or a pharmaceutically acceptable salt thereof.
In another aspect, the present disclosure provides a pharmaceutical composition comprising the compound of the present disclosure or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.
In a further aspect, the present disclosure provides a method for inhibiting a TAM kinase, comprising contacting the TAM kinase with the compound of the present disclosure or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of the present disclosure.
In a further aspect, the present disclosure provides a method for inhibiting AXL and MER kinases, comprising contacting the AXL and MER kinases with the compound of the present disclosure or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of the present disclosure.
In a further aspect, the present disclosure provides a method for treating a disease or disorder mediated by TAM in a subject in need thereof, comprising administering an effective amount of the compound of the present disclosure or a pharmaceutically acceptable salt thereof, or the pharmaceutical composition of the present disclosure to the subject.
DETAILED DESCRIPTION OF THE DISCLOSURE
Reference will now be made in detail to certain embodiments of the present disclosure, examples of which are illustrated in the accompanying structures and formulas. While the present disclosure will be described in conjunction with the enumerated embodiments, it will be understood that they are not intended to limit the present disclosure to those embodiments. On the contrary, the present disclosure is intended to cover all alternatives, modifications, and equivalents, which may be included within the scope of the present disclosure as defined by the claims. One skilled in the art will recognize many methods and materials similar or equivalent to those described herein, which could be used in the practice of the present disclosure. The present disclosure is in no way limited to the methods and materials described. In the event that one or more of the incorporated references and similar materials differs from or contradicts this application, including but not limited to defined terms, term usage, described techniques, or the like, the present disclosure controls. All references, patents, patent applications cited in the present disclosure are hereby incorporated by reference in their entireties.
It is appreciated that certain features of the present disclosure, which are, for clarity, described in the context of separate embodiments, can also be provided in combination in a single embodiment. Conversely, various features of the present disclosure, which are, for brevity, described in the context of a single embodiment, can also be provided separately or in any suitable sub-combination. It must be noted that, as used in the specification and the appended claims, the singular forms “a, ” “an, ” and “the” include plural forms of the same unless the context clearly dictates otherwise. Thus, for example, reference to “a compound” includes a plurality of compounds.
Definitions
Definitions of specific functional groups and chemical terms are described in more detail below. For purposes of this disclosure, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75
th Ed., inside cover, and specific functional groups are generally defined as described therein. Additionally, general principles of organic chemistry, as well as specific functional moieties and reactivity, are described in Organic Chemistry, Thomas Sorrell, 2
nd Edition, University Science Books, Sausalito, 2006; Smith and March March’s Advanced Organic Chemistry, 6
th Edition, John Wiley &Sons, Inc., New York, 2007; Larock, Comprehensive Organic Transformations, 3
rd Edition, VCH Publishers, Inc., New York, 2018; Carruthers, Some Modern Methods of Organic Synthesis, 4
th Edition, Cambridge University Press, Cambridge, 2004; the entire contents of each of which are incorporated herein by reference.
At various places in the present disclosure, linking substituents are described. It is specifically intended that each linking substituent includes both the forward and backward forms of the linking substituent. For example, -NR (CR’R”) -includes both -NR (CR’R”) -and - (CR’R”) NR-. Where the structure clearly requires a linking group, the Markush variables listed for that group are understood to be linking groups. For example, if the structure requires a linking group and the Markush group definition for that variable lists “alkyl” , then it is understood that the “alkyl” represents a linking alkylene group.
When a bond to a substituent is shown to cross a bond connecting two atoms in a ring, then such substituent may be bonded to any atom in the ring. When a substituent is listed without indicating the atom via which such substituent is bonded to the rest of the compound of a given formula, then such substituent may be bonded via any atom in such formula. Combinations of substituents and/or variables are permissible, but only if such combinations result in stable compounds.
When any variable (e.g., R
i) occurs more than one time in any constituent or formula for a compound, its definition at each occurrence is independent of its definition at every other occurrence. Thus, for example, if a group is shown to be substituted with 0-2 R
i moieties, then the group may optionally be substituted with up to two R
i moieties and R
i at each occurrence is selected independently from the definition of R
i. Also, combinations of substituents and/or variables are permissible, but only if such combinations result in stable compounds.
As used herein, the term “C
i-j” indicates a range of the carbon atoms numbers, wherein i and j are integers and the range of the carbon atoms numbers includes the endpoints (i.e. i and j) and each integer point in between, and wherein j is greater than i. For examples, C
1-6 indicates a range of one to six carbon atoms, including one carbon atom, two carbon atoms, three carbon atoms, four carbon atoms, five carbon atoms and six carbon atoms. In some embodiments, the term “C
1-12” indicates 1 to 12, particularly 1 to 10, particularly 1 to 8, particularly 1 to 6, particularly 1 to 5, particularly 1 to 4, particularly 1 to 3 or particularly 1 to 2 carbon atoms.
As used herein, the term “alkyl” , whether as part of another term or used independently, refers to a saturated linear or branched-chain hydrocarbon radical, which may be optionally substituted independently with one or more substituents described below. The term “C
i-j alkyl” refers to an alkyl having i to j carbon atoms. In some embodiments, alkyl groups contain 1 to 10 carbon atoms. In some embodiments, alkyl groups contain 1 to 9 carbon atoms. In some embodiments, alkyl groups contain 1 to 8 carbon atoms, 1 to 7 carbon atoms, 1 to 6 carbon atoms, 1 to 5 carbon atoms, 1 to 4 carbon atoms, 1 to 3 carbon atoms, or 1 to 2 carbon atoms. Examples of “C
1-10 alkyl” include, but are not limited to, methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl, and decyl. Examples of “C
1-6 alkyl” are methyl, ethyl, propyl, isopropyl, n-butyl, i-butyl, s-butyl, t-butyl, n-pentyl, 2-pentyl, 3-pentyl, 2-methyl-2-butyl, 3-methyl-2-butyl, 3-methyl-1-butyl, 2-methyl-1-butyl, 1-hexyl, 2-hexyl, 3-hexyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl, 4-methyl-2-pentyl, 3-methyl-3-pentyl, 2-methyl-3-pentyl, 2, 3-dimethyl-2-butyl, 3, 3-dimethyl-2-butyl, and the like.
As used herein, the term “alkoxyl” , whether as part of another term or used independently, refers to an alkyl group, as previously defined, attached to the parent molecule through an oxygen atom. The term “C
i-j alkoxy” means that the alkyl moiety of the alkoxy group has i to j carbon atoms. In some embodiments, alkoxy groups contain 1 to 10 carbon atoms. In some embodiments, alkoxy groups contain 1 to 9 carbon atoms. In some embodiments, alkoxy groups contain 1 to 8 carbon atoms, 1 to 7 carbon atoms, 1 to 6 carbon atoms, 1 to 5 carbon atoms, 1 to 4 carbon atoms, 1 to 3 carbon atoms, or 1 to 2 carbon atoms. Examples of “C
1-6 alkoxyl” include, but are not limited to, methoxy, ethoxy, propoxy (e.g. n-propoxy and isopropoxy) , t-butoxy, neopentoxy, n-hexoxy, and the like.
As used herein, the term “amino” refers to –NH
2 group. Amino groups may also be substituted with one or more groups such as alkyl, aryl, carbonyl or other amino groups.
As used herein, the term “aryl” , whether as part of another term or used independently, refers to monocyclic and polycyclic ring systems having a total of 5 to 20 ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 12 ring members. Examples of “aryl” include, but are not limited to, phenyl, biphenyl, naphthyl, anthracyl and the like, which may bear one or more substituents. Also included within the scope of the term “aryl” , as it is used herein, is a group in which an aromatic ring is fused to one or more additional rings. In the case of polycyclic ring system, only one of the rings needs to be aromatic (e.g., 2, 3-dihydroindole) , although all of the rings may be aromatic (e.g., quinoline) . The second ring can also be fused or bridged. Examples of polycyclic aryl include, but are not limited to, benzofuranyl, indanyl, phthalimidyl, naphthimidyl, phenanthridinyl, or tetrahydronaphthyl, and the like. Aryl groups can be substituted at one or more ring positions with substituents as described above.
As used herein, the term “cycloalkyl” , whether as part of another term or used independently, refer to a monovalent non-aromatic, saturated or partially unsaturated monocyclic and polycyclic ring system, in which all the ring atoms are carbon and which contains at least three ring forming carbon atoms. In some embodiments, the cycloalkyl may contain 3 to 12 ring forming carbon atoms, 3 to 10 ring forming carbon atoms, 3 to 9 ring forming carbon atoms, 3 to 8 ring forming carbon atoms, 3 to 7 ring forming carbon atoms, 3 to 6 ring forming carbon atoms, 3 to 5 ring forming carbon atoms, 4 to 12 ring forming carbon atoms, 4 to 10 ring forming carbon atoms, 4 to 9 ring forming carbon atoms, 4 to 8 ring forming carbon atoms, 4 to 7 ring forming carbon atoms, 4 to 6 ring forming carbon atoms, 4 to 5 ring forming carbon atoms. Cycloalkyl groups may be saturated or partially unsaturated. Cycloalkyl groups may be substituted. In some embodiments, the cycloalkyl group may be a saturated cyclic alkyl group. In some embodiments, the cycloalkyl group may be a partially unsaturated cyclic alkyl group that contains at least one double bond or triple bond in its ring system. In some embodiments, the cycloalkyl group may be monocyclic or polycyclic. Examples of monocyclic cycloalkyl group include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, 1-cyclopent-1-enyl, 1-cyclopent-2-enyl, 1-cyclopent-3-enyl, cyclohexyl, 1-cyclohex-1-enyl, 1-cyclohex-2-enyl, 1-cyclohex-3-enyl, cyclohexadienyl, cycloheptyl, cyclooctyl, cyclononyl, cyclodecyl, cycloundecyl and cyclododecyl. Examples of polycyclic cycloalkyl group include, but are not limited to, adamantyl, norbornyl, fluorenyl, spiro-pentadienyl, spiro [3.6] -decanyl, bicyclo [1, 1, 1] pentenyl, bicyclo [2, 2, 1] heptenyl, and the like.
As used herein, the term “cyano” refers to –CN.
As used herein, the term “halogen” refers to an atom selected from fluorine (or fluoro) , chlorine (or chloro) , bromine (or bromo) and iodine (or iodo) .
As used herein, the term “haloalkyl” refers to alkyl as defined herein substituted with one or more halogen atoms.
As used herein, the term “haloalkoxyl” refers to alkoxyl as defined herein substituted with one or more halogen atoms.
As used herein, the term “heteroatom” refers to nitrogen, oxygen, or sulfur, and includes any oxidized form of nitrogen or sulfur, and any quaternized form of a basic nitrogen (including N-oxides) .
As used herein, the term “heteroaryl” , whether as part of another term or used independently, refers to an aryl group having, in addition to carbon atoms, one or more heteroatoms. The heteroaryl group can be monocyclic. Examples of monocyclic heteroaryl include, but are not limited to, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, pyridyl, pyridazinyl, pyrimidinyl, pyrazinyl, indolizinyl, purinyl, naphthyridinyl, benzofuranyl and pteridinyl. The heteroaryl group also includes polycyclic groups in which a heteroaromatic ring is fused to one or more aryl, cycloaliphatic, or heterocyclyl rings, where the radical or point of attachment is on the heteroaromatic ring. Examples of polycyclic heteroaryl include, but are not limited to, indolyl, isoindolyl, benzothienyl, benzofuranyl, benzo [1, 3] dioxolyl, dibenzofuranyl, indazolyl, benzimidazolyl, benzthiazolyl, quinolyl, isoquinolyl, dihydroquinolinyl, dihydroisoquinolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, cinnolinyl, phthalazinyl, quinazolinyl, quinoxalinyl, 4H-quinolizinyl, carbazolyl, acridinyl, phenazinyl, phenothiazinyl, phenoxazinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, and the like.
As used herein, the term “heterocyclyl” refers to a saturated or partially unsaturated carbocyclyl group in which one or more ring atoms are heteroatoms independently selected from oxygen, sulfur, nitrogen, phosphorus, and the like, the remaining ring atoms being carbon, wherein one or more ring atoms may be optionally substituted independently with one or more substituents. In some embodiments, the heterocyclyl is a saturated heterocyclyl. In some embodiments, the heterocyclyl is a partially unsaturated heterocyclyl having one or more double bonds in its ring system. In some embodiments, the heterocyclyl may contains any oxidized form of carbon, nitrogen or sulfur, and any quaternized form of a basic nitrogen. “Heterocyclyl” also includes radicals wherein the heterocyclyl radicals are fused with a saturated, partially unsaturated, or fully unsaturated (i.e., aromatic) carbocyclic or heterocyclic ring. The heterocyclyl radical may be carbon linked or nitrogen linked where such is possible. In some embodiments, the heterocycle is carbon linked. In some embodiments, the heterocycle is nitrogen linked. For example, a group derived from pyrrole may be pyrrol-1-yl (nitrogen linked) or pyrrol-3-yl (carbon linked) . Further, a group derived from imidazole may be imidazol-1-yl (nitrogen linked) or imidazol-3-yl (carbon linked) .
In some embodiments, the term “3-to 12-membered heterocyclyl” refers to a 3-to 12-membered saturated or partially unsaturated monocyclic or polycyclic heterocyclic ring system having 1 to 3 heteroatoms independently selected from nitrogen, oxygen, or sulfur. The fused, spiro and bridged ring systems are also included within the scope of this definition. Examples of monocyclic heterocyclyl include, but are not limited to oxetanyl, 1, 1-dioxothietanylpyrrolidyl, tetrahydrofuryl, tetrahydrothienyl, pyrrolyl, furanyl, thienyl, pyrazolyl, imidazolyl, triazolyl, oxazolyl, thiazolyl, piperidyl, piperazinyl, piperidinyl, morpholinyl, pyridinyl, pyrazinyl, pyrimidinyl, pyridazinyl, triazinyl, pyridonyl, pyrimidonyl, pyrazinonyl, pyrimidonyl, pyridazonyl, pyrrolidinyl, triazinonyl, and the like. Examples of fused heterocyclyl include, but are not limited to, phenyl fused ring or pyridinyl fused ring, such as quinolinyl, isoquinolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, quinoxalinyl, quinolizinyl, quinazolinyl, azaindolizinyl, pteridinyl, chromenyl, isochromenyl, indolyl, isoindolyl, indolizinyl, indazolyl, purinyl, benzofuranyl, isobenzofuranyl, benzimidazolyl, benzothienyl, benzothiazolyl, carbazolyl, phenazinyl, phenothiazinyl, phenanthridinyl, imidazo [1, 2-a] pyridinyl, [1, 2, 4] triazolo [4, 3-a] pyridinyl, [1, 2, 3] triazolo [4, 3-a] pyridinyl groups, and the like. Examples of spiro heterocyclyl include, but are not limited to, spiropyranyl, spirooxazinyl, and the like. Examples of bridged heterocyclyl include, but are not limited to, morphanyl, hexamethylenetetraminyl, 3-aza-bicyclo [3.1.0] hexane, 8-aza-bicyclo [3.2.1] octane, 1-aza-bicyclo [2.2.2] octane, 1, 4-diazabicyclo [2.2.2] octane (DABCO) , and the like.
As used herein, the term “hydroxyl” or “hydroxy” refers to –OH.
As used herein, the term “oxo” refers to =O substituent.
As used herein, the term “partially unsaturated” refers to a radical that includes at least one double or triple bond. The term “partially unsaturated” is intended to encompass rings having multiple sites of unsaturation, but is not intended to include aromatic (i.e., fully unsaturated) moieties.
As used herein, the term “substituted” , whether preceded by the term “optionally” or not, means that one or more hydrogens of the designated moiety are replaced with a suitable substituent. It will be understood that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and that the substitution results in a stable or chemically feasible compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc. Unless otherwise indicated, an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position. It will be understood by those skilled in the art that substituents can themselves be substituted, if appropriate. Unless specifically stated as “unsubstituted” , references to chemical moieties herein are understood to include substituted variants. For example, reference to an “aryl” group or moiety implicitly includes both substituted and unsubstituted variants.
Compounds
The present disclosure provides a novel compound of Formula (I) and pharmaceutically acceptable salts thereof, synthetic methods for making the compound, pharmaceutical compositions and various uses of the disclosed compounds.
In one aspect, the present disclosure provides a compound having Formula (I) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms;
Ring B is phenyl or 6-member heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, Ring A is a 5-membered heteroaryl comprising 1 nitrogen atom.
In some embodiments, Ring A is a 5-membered heteroaryl comprising 2 nitrogen atom.
In some embodiments, Ring B is phenyl optionally substituted with one or two R
2.
In some embodiments, Ring B is 6-member heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R
2. In certain embodiments, Ring B is pyridinyl.
In some embodiments, R
1 is cycloalkyl optionally substituted with one or more R
b. In certain embodiments, R
1 is C
3-8 cycloalkyl, C
3-7 cycloalkyl, C
3-6 cycloalkyl, or C
3-5 cycloalkyl, each optionally substituted with one or more R
b. In certain embodiments, R
1 is cyclopropyl optionally substituted with one or more R
b.
In some embodiments, R
1 is heterocyclyl optionally substituted with one or more R
b. In certain embodiments, R
1 is C
3-8 heterocyclyl, C
3-7 heterocyclyl, C
3-6 heterocyclyl, or C
3-5 heterocyclyl, each optionally substituted with one or more R
b.
In some embodiments, each R
b is independently selected from oxo, alkyl, alkoxyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
In some embodiments, R
1 is cycloalkyl optionally substituted with one or more R
b, R
b is –C (O) NH-R
c, and R
c is aryl or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, R
1 is heterocyclyl optionally substituted with one or more R
b, each R
b is independently selected from oxo, alkyl, alkoxyl, aryl, or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, R
1 is selected from the group consisting of:
In some embodiments, R
2 is halogen. In certain embodiments, R
2 is fluoro or chloro. In certain embodiments, R
2 is fluoro.
In some embodiments, R
2 is alkyl. In certain embodiments, R
2 is methyl.
In some embodiments, R
2 is haloalkyl. In certain embodiments, R
2 is trifluoromethyl.
In some embodiments, Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R
a.
In some embodiments, Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R
a.
In certain embodiments, Ring C is piperidinyl or octahydroindolizinyl optionally substituted with one or more R
a. In certain embodiments, Ring C is 4-piperidinyl or 7-octahydroindolizinyl optionally substituted with one or more R
a.
In certain embodiments, each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, and –C (=O) R
c. In certain embodiments, R
c is alkyl, C
3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
In some embodiments, Ring C is 5-6 membered aryl optionally substituted with one or more R
a.
In certain embodiments, Ring C is phenyl optionally substituted with one or more R
a.
In certain embodiments, each R
a is independently selected from the group consisting of halogen, cyano, alkyl, C
3-8 cycloalkyl and 5-6 membered heteroaryl.
In certain embodiments, two adjacent R
a together with the atom they attached form C
5-8 cycloalkyl or 5-8 membered heterocyclyl.
In another aspect, the present disclosure provides a compound having Formula (Ia) :
or a pharmaceutically acceptable salt thereof.
In one aspect, the present disclosure provides a compound selected from the group consisting of:
or a pharmaceutically acceptable salt thereof.
In another aspect, the present disclosure provides a compound having Formula (II) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms;
Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
W is CH, N, O, or S;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino or alkyl;
R
3 is null, hydrogen, oxo, alkyl or haloalkyl;
R
4 is NH
2 or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, Ring A is phenyl.
In some embodiments, Ring A is a 6-membered heteroaryl comprising 1 nitrogen atom.
In some embodiments, W is N.
In some embodiments, W is O or S.
In some embodiments, W is CH.
In some embodiments, Ring B is phenyl.
In some embodiments, Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms. In certain embodiments, Ring B is pyridinyl.
In some embodiments, R
1 is cycloalkyl optionally substituted with one or more R
b. In certain embodiments, R
1 is C
3-8 cycloalkyl, C
3-7 cycloalkyl, C
3-6 cycloalkyl, or C
3-5 cycloalkyl, each optionally substituted with one or more R
b. In certain embodiments, R
1 is cyclopropyl optionally substituted with one or more R
b.
In some embodiments, R
1 is heterocyclyl optionally substituted with one or more R
b. In certain embodiments, R
1 is C
3-8 heterocyclyl, C
3-7 heterocyclyl, C
3-6 heterocyclyl, or C
3-5 heterocyclyl, each optionally substituted with one or more R
b.
In some embodiments, each R
b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
In some embodiments, R
1 is cycloalkyl optionally substituted with one or more R
b, R
b is –C (O) NH-R
c, and R
c is aryl or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, R
1 is heterocyclyl optionally substituted with one or more R
b, each R
b is independently selected from oxo, alkyl, alkoxyl, aryl, or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, R
1 is selected from the group consisting of:
In some embodiments, R
2 is halogen. In certain embodiments, R
2 is fluoro or chloro. In certain embodiments, R
2 is fluoro.
In some embodiments, R
2 is alkyl. In certain embodiments, R
2 is methyl.
In some embodiments, R
2 is haloalkyl. In certain embodiments, R
2 is trifluoromethyl.
In some embodiments, Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R
a.
In some embodiments, Ring C is 6-membered heterocyclyl optionally substituted with one or more R
a.
In certain embodiments, Ring C is piperidinyl optionally substituted with one or more R
a. In certain embodiments, Ring C is 4-piperidinyl optionally substituted with one or more R
a.
In certain embodiments, each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, alkyl, and –C (=O) R
c. In certain embodiments, R
c is alkyl, C
3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
In some embodiments, Ring C is 5-6 membered aryl optionally substituted with one or more R
a.
In certain embodiments, Ring C is phenyl optionally substituted with one or more R
a.
In certain embodiments, each R
a is independently selected from the group consisting of halogen, cyano, alkyl, C
3-8 cycloalkyl and 5-6 membered heteroaryl.
In certain embodiments, two adjacent R
a together with the atom they attached form C
5-8 cycloalkyl or 5-8 membered heterocyclyl.
In some embodiment, R
3 is null.
In some embodiments, R
3 is hydrogen.
In some embodiments, R
3 is oxo.
In some embodiments, R
3 is alkyl. In certain embodiments, R
3 is C
1-6 alkyl, C
1-5 alkyl, C
1-4 alkyl or C
1-3 alkyl. In certain embodiments, R
3 is methyl or ethyl.
In some embodiments, R
3 is haloalkyl. In certain embodiments, R
3 is C
1-6 haloalkyl, C
1-5 haloalkyl, C
1-4 haloalkyl or C
1-3 haloalkyl. In certain embodiments, R
3 is difluoromethyl, trifluoroethyl or difluoroethyl.
In some embodiments, R
4 is NH
2.
In some embodiments, R
4 is haloalkyl. In certain embodiments, R
4 is difluoromethyl.
In one aspect, the present disclosure provides a compound selected from the group consisting of:
or a pharmaceutically acceptable salt thereof.
In a further aspect, the present disclosure provides a compound having Formula (III) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms;
Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, Ring A is a 5-membered heteroaryl comprising 1 nitrogen atom.
In some embodiments, Ring A is a 5-membered heteroaryl comprising 2 nitrogen atoms.
In some embodiments, Ring B is phenyl optionally substituted with one or two R
2. In certain embodiments, Ring B is phenyl.
In some embodiments, Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R
2. In certain embodiments, Ring B is pyridinyl.
In some embodiments, R
1 is heterocyclyl optionally substituted with one or more R
b.
In certain embodiments, R
1 is heterocyclyl optionally substituted with one or more R
b, and each R
b is independently selected from oxo, alkyl, alkoxyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
In certain embodiments, R
1 is heterocyclyl optionally substituted with one or more R
b, and each R
b is independently selected from oxo, aryl or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
In certain embodiments, R
1 is selected from:
In some embodiments, R
2 is halogen. In certain embodiments, R
2 is fluoro.
In some embodiments, Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R
a.
In certain embodiments, Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R
a. In certain embodiments, Ring C is piperidinyl optionally substituted with one or more R
a. In certain embodiments, Ring C is 4-piperidinyl optionally substituted with one or more R
a.
In certain embodiments, Ring C is 4-piperidinyl optionally substituted with one or more R
a, and each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, and –C (=O) R
c. In certain embodiments, R
c is alkyl, C
3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
In another aspect, the present disclosure provides a compound selected from:
or a pharmaceutically acceptable salt thereof.
In a further aspect, the present disclosure provides a compound having Formula (IV) :
or a pharmaceutical acceptable salt thereof,
wherein
Ring A is a 6-membered heterocyclyl or 6-membered heteroaryl, each of which comprises 1 or 2 nitrogen atoms and is optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl;
Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R
2;
Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
a;
R
1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R
b;
R
2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;
each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R
c; or
two adjacent R
a together with the atoms they attached form a cycloalkyl or heterocyclyl;
each R
b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R
c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; and
R
c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
In some embodiments, Ring A is a 6-membered heteroaryl comprising 2 nitrogen atoms and optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl.
In some embodiments, Ring A is a 6-membered heterocyclyl comprising 2 nitrogen atoms and optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl.
In some embodiments, Ring B is phenyl optionally substituted with one or two R
2.
In some embodiments, Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R
2. In certain embodiments, Ring B is pyridinyl.
In some embodimens, R
1 is heterocyclyl optionally substituted with one or more R
b. In certain embodiments, each R
b is independently selected from oxo, alkyl, alkoxyl, aryl, or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
In certain embodiments, Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R
a. In certain embodiments, Ring C is piperidinyl optionally substituted with one or more R
a. In certain embodiments, Ring C is 4-piperidinyl optionally substituted with one or more R
a.
In certain embodiments, Ring C is 4-piperidinyl optionally substituted with one or more R
a, and each R
a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo alkyl, and –C (=O) R
c. In certain embodiments, R
c is alkyl, C
3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
In another aspect, the present disclosure provides a compound selected from:
or a pharmaceutically acceptable salt thereof.
Exemplary compounds of the present disclosure are set forth in Table 1 below.
Table 1
The compound of the present disclosure may exist in a number of different forms or derivatives, including but not limited to prodrugs, soft drugs, active metabolic derivatives (active metabolites) , and their pharmaceutically acceptable salts, all within the scope of the present disclosure.
As used herein, the term “prodrugs” refers to compounds or pharmaceutically acceptable salts thereof which, when metabolized under physiological conditions or when converted by solvolysis, yield the desired active compound. Prodrugs include, without limitation, esters, amides, carbamates, carbonates, ureides, solvates, or hydrates of the active compound. Typically, the prodrug is inactive, or less active than the active compound, but may provide one or more advantageous handling, administration, and/or metabolic properties. For example, some prodrugs are esters of the active compound; during metabolysis, the ester group is cleaved to yield the active drug. Also, some prodrugs are activated enzymatically to yield the active compound, or a compound which, upon further chemical reaction, yields the active compound. Prodrugs may proceed from prodrug form to active form in a single step or may have one or more intermediate forms which may themselves have activity or may be inactive. Preparation and use of prodrugs is discussed in T. Higuchi and V. Stella, “Pro-drugs as Novel Delivery Systems” , Vol. 14 of the A. C. S. Symposium Series, in Bioreversible Carriers in Drug Design, ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press, 1987; in Prodrugs: Challenges and Rewards, ed. V. Stella, R. Borchardt, M. Hageman, R. Oliyai, H. Maag, J. Tilley, Springer-Verlag New York, 2007, all of which are hereby incorporated by reference in their entirety.
As used herein, the term “soft drug” refers to compounds that exert a pharmacological effect but break down to inactive metabolites degradants so that the activity is of limited time. See, for example, “Soft drugs: Principles and methods for the design of safe drugs” , Nicholas Bodor, Medicinal Research Reviews, Vol. 4, No. 4, 449-469, 1984, which is hereby incorporated by reference in its entirety.
As used herein, the term “metabolite” , e.g., active metabolite overlaps with prodrug as described above. Thus, such metabolites are pharmacologically active compounds or compounds that further metabolize to pharmacologically active compounds that are derivatives resulting from metabolic process in the body of a subject. For example, such metabolites may result from oxidation, reduction, hydrolysis, amidation, deamidation, esterification, deesterification, enzymatic cleavage, and the like, of the administered compound or salt or prodrug. Of these, active metabolites are such pharmacologically active derivative compounds. For prodrugs, the prodrug compound is generally inactive or of lower activity than the metabolic product. For active metabolites, the parent compound may be either an active compound or may be an inactive prodrug.
Prodrugs and active metabolites may be identified using routine techniques know in the art. See, e.g., Bertolini et al, 1997, J Med Chem 40: 2011-2016; Shan et al., J Pharm Sci 86: 756-757; Bagshawe, 1995, DrugDev Res 34: 220-230; Wermuth, supra.
As used herein, the term “pharmaceutically acceptable” indicates that the substance or composition is compatible chemically and/or toxicologically, with the other ingredients comprising a formulation, and/or the subjects being treated therewith.
As used herein, the term “pharmaceutically acceptable salt” , unless otherwise indicated, includes salts that retain the biological effectiveness of the free acids and bases of the specified compound and that are not biologically or otherwise undesirable. Contemplated pharmaceutically acceptable salt forms include, but are not limited to, mono, bis, tris, tetrakis, and so on. Pharmaceutically acceptable salts are non-toxic in the amounts and concentrations at which they are administered. The preparation of such salts can facilitate the pharmacological use by altering the physical characteristics of a compound without preventing it from exerting its physiological effect. Useful alterations in physical properties include lowering the melting point to facilitate transmucosal administration and increasing the solubility to facilitate administering higher concentrations of the drug.
Pharmaceutically acceptable salts include acid addition salts such as those containing sulfate, chloride, hydrochloride, fumarate, maleate, phosphate, sulfamate, acetate, citrate, lactate, tartrate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate, cyclohexylsulfamate and quinate. Pharmaceutically acceptable salts can be obtained from acids such as hydrochloric acid, maleic acid, sulfuric acid, phosphoric acid, sulfamic acid, acetic acid, citric acid, lactic acid, tartaric acid, malonic acid, methanesulfonic acid, ethanesulfonic acid, benzenesulfonic acid, p-toluenesulfonic acid, cyclohexylsulfamic acid, fumaric acid, and quinic acid.
Pharmaceutically acceptable salts also include basic addition salts such as those containing benzathine, chloroprocaine, choline, diethanolamine, ethanolamine, t-butylamine, ethylenediamine, meglumine, procaine, aluminum, calcium, lithium, magnesium, potassium, sodium, ammonium, alkylamine, and zinc, when acidic functional groups, such as carboxylic acid or phenol are present. For example, see Remington's Pharmaceutical Sciences, 19
thed., Mack Publishing Co., Easton, PA, Vol. 2, p. 1457, 1995; “Handbook of Pharmaceutical Salts: Properties, Selection, and Use” by Stahl and Wermuth, Wiley-VCH, Weinheim, Germany, 2002. Such salts can be prepared using the appropriate corresponding bases.
Pharmaceutically acceptable salts can be prepared by standard techniques. For example, the free-base form of a compound can be dissolved in a suitable solvent, such as an aqueous or aqueous-alcohol solution containing the appropriate acid and then isolated by evaporating the solution. Thus, if the particular compound is a base, the desired pharmaceutically acceptable salt may be prepared by any suitable method available in the art, for example, treatment of the free base with an inorganic acid, such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and the like, or with an organic acid, such as acetic acid, maleic acid, succinic acid, mandelic acid, fumaric acid, malonic acid, pyruvic acid, oxalic acid, glycolic acid, salicylic acid, a pyranosidyl acid, such as glucuronic acid or galacturonic acid, an alpha-hydroxy acid, such as citric acid or tartaric acid, an amino acid, such as aspartic acid or glutamic acid, an aromatic acid, such as benzoic acid or cinnamic acid, a sulfonic acid, such as p-toluenesulfonic acid or ethanesulfonic acid, or the like.
Similarly, if the particular compound is an acid, the desired pharmaceutically acceptable salt may be prepared by any suitable method, for example, treatment of the free acid with an inorganic or organic base, such as an amine (primary, secondary or tertiary) , an alkali metal hydroxide or alkaline earth metal hydroxide, or the like. Illustrative examples of suitable salts include organic salts derived from amino acids, such as L-glycine, L-lysine, and L-arginine, ammonia, primary, secondary, and tertiary amines, and cyclic amines, such as hydroxyethylpyrrolidine, piperidine, morpholine or piperazine, and inorganic salts derived from sodium, calcium, potassium, magnesium, manganese, iron, copper, zinc, aluminum and lithium.
It is also to be understood that the compound of present disclosure can exist in unsolvated forms, solvated forms (e.g., hydrated forms) , and solid forms (e.g., crystal or polymorphic forms) , and the present disclosure is intended to encompass all such forms.
As used herein, the term “solvate” or “solvated form” refers to solvent addition forms that contain either stoichiometric or non-stoichiometric amounts of solvent. Some compounds have a tendency to trap a fixed molar ratio of solvent molecules in the crystalline solid state, thus forming a solvate. If the solvent is water the solvate formed is a hydrate; and if the solvent is alcohol, the solvate formed is an alcoholate. Hydrates are formed by the combination of one or more molecules of water with one molecule of the substance in which the water retains its molecular state as H
2O. Examples of solvents that form solvates include, but are not limited to, water, isopropanol, ethanol, methanol, DMSO, ethyl acetate, acetic acid, and ethanolamine.
As used herein, the terms “crystal form” , “crystalline form” , “polymorphic forms” and “polymorphs” can be used interchangeably, and mean crystal structures in which a compound (or a salt or solvate thereof) can crystallize in different crystal packing arrangements, all of which have the same elemental composition. Different crystal forms usually have different X-ray diffraction patterns, infrared spectral, melting points, density hardness, crystal shape, optical and electrical properties, stability and solubility. Recrystallization solvent, rate of crystallization, storage temperature, and other factors may cause one crystal form to dominate. Crystal polymorphs of the compounds can be prepared by crystallization under different conditions.
The compound of the present disclosure may also exist in different tautomeric forms, and all such forms are embraced within the scope of the present disclosure. The term “tautomer” or “tautomeric form” refers to structural isomers of different energies which are interconvertible via a low energy barrier. For example, proton tautomers (also known as prototropic tautomers) include interconversions via migration of a proton, such as keto-enol, amide-imidic acid, lactam-lactim, imine-enamine isomerizations and annular forms where a proton can occupy two or more positions of a heterocyclic system (for example, 1H-and 3H-imidazole, 1H-, 2H-and 4H-1, 2, 4-triazole, 1H-and 2H-isoindole, and 1H-and 2H-pyrazole) . Valence tautomers include interconversions by reorganization of some of the bonding electrons. Tautomers can be in equilibrium or sterically locked into one form by appropriate substitution. Compounds of the present disclosure identified by name or structure as one particular tautomeric form are intended to include other tautomeric forms unless otherwise specified.
The present disclosure is also intended to include all isotopes of atoms in the compounds. Isotopes of an atom include atoms having the same atomic number but different mass numbers. For example, unless otherwise specified, hydrogen, carbon, nitrogen, oxygen, phosphorous, sulfur, fluorine, chlorine, bromide or iodine in the compounds of present disclosure are meant to also include their isotopes, such as but not limited to
1H,
2H,
3H,
11C,
12C,
13C,
14C,
14N,
15N,
16O,
17O,
18O,
31P,
32P,
32S,
33S,
34S,
36S,
17F,
18F,
19F,
35Cl,
37Cl,
79Br,
81Br,
124I,
127I and
131I. In some embodiments, hydrogen includes protium, deuterium and tritium. In some embodiments, carbon includes
12C and
13C.
The term “compound” as used herein is meant to include all forms or derivatives of the structure depicted. The compound herein identified by name or structure as one particular tautomeric form are intended to include other tautomeric forms unless otherwise specified.
Synthesis of Compounds
Synthesis of the compound provided herein, including pharmaceutically acceptable salts thereof, is illustrated in the synthetic schemes in the example. The compound provided herein can be prepared using any known organic synthesis techniques and can be synthesized according to any of numerous possible synthetic routes, and thus these schemes are illustrative only and are not meant to limit other possible methods that can be used to prepare the compounds provided herein. Additionally, the steps in the schemes are for better illustration and can be changed as appropriate. The embodiments of the compound in examples were synthesized for the purposes of research and potentially submission to regulatory agencies.
The reactions for preparing the compound of the present disclosure can be carried out in suitable solvents, which can be readily selected by one skilled in the art of organic synthesis. Suitable solvents can be substantially non-reactive with the starting materials (reactants) , the intermediates, or products at the temperatures at which the reactions are carried out, e.g. temperatures that can range from the solvent’s freezing temperature to the solvent's boiling temperature. A given reaction can be carried out in one solvent or a mixture of more than one solvent. Depending on the particular reaction step, suitable solvents for a particular reaction step can be selected by one skilled in the art.
Preparation of the compound of the present disclosure can involve the protection and deprotection of various chemical groups. The need for protection and deprotection, and the selection of appropriate protecting groups, can be readily determined by one skilled in the art. The chemistry of protecting groups can be found, for example, in T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, 3rd Ed., Wiley &Sons, Inc., New York (1999) , in P. Kocienski, Protecting Groups, Georg Thieme Verlag, 2003, and in Peter G.M. Wuts, Greene's Protective Groups in Organic Synthesis, 5
th Edition, Wiley, 2014, all of which are incorporated herein by reference in its entirety.
Reactions can be monitored according to any suitable method known in the art. For example, product formation can be monitored by spectroscopic means, such as nuclear magnetic resonance spectroscopy (e.g.
1H or
13C) , infrared spectroscopy, spectrophotometry (e.g. UV-visible) , mass spectrometry, or by chromatographic methods such as high performance liquid chromatography (HPLC) , liquid chromatography-mass spectroscopy (LCMS) , or thin layer chromatography (TLC) . Compounds can be purified by one skilled in the art by a variety of methods, including high performance liquid chromatography (HPLC) ( “Preparative LC-MS Purification: Improved Compound Specific Method Optimization” Karl F. Blom, Brian Glass, Richard Sparks, Andrew P. Combs J. Combi. Chem. 2004, 6 (6) , 874-883, which is incorporated herein by reference in its entirety) , and normal phase silica chromatography.
The known starting materials of the present disclosure can be synthesized by using or according to the known methods in the art, or can be purchased from commercial suppliers. Unless otherwise noted, analytical grade solvents and commercially available reagents were used without further purification.
Unless otherwise specified, the reactions of the present disclosure were all done under a positive pressure of nitrogen or argon or with a drying tube in anhydrous solvents, and the reaction flasks were typically fitted with rubber septa for the introduction of substrates and reagents via syringe. Glassware was oven dried and/or heat dried.
For illustrative purposes, the Examples section below shows synthetic route for preparing the compound of the present disclosure as well as key intermediates. Those skilled in the art will appreciate that other synthetic routes may be used to synthesize the inventive compounds. Although specific starting materials and reagents are depicted, other starting materials and reagents can be easily substituted to provide a variety of derivatives and/or reaction conditions. In addition, many of the compounds prepared by the methods described below can be further modified in light of this disclosure using conventional chemistry well known to those skilled in the art.
Pharmaceutical Compositions
In a further aspect, there is provided pharmaceutical compositions comprising the compound of the present disclosure, or a pharmaceutically acceptable salt thereof.
In another aspect, there is provided pharmaceutical composition comprising the compound of the present disclosure, or a pharmaceutically acceptable salt thereof, and at least one pharmaceutical acceptable excipient.
As used herein, the term “pharmaceutical composition” refers to a formulation containing the molecule or compound of the present disclosure in a form suitable for administration to a subject.
As used herein, the term “pharmaceutically acceptable excipient” means an excipient that is useful in preparing a pharmaceutical composition that is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes excipient that is acceptable for veterinary use as well as human pharmaceutical use. A “pharmaceutically acceptable excipient” as used herein includes both one and more than one such excipient. The term “pharmaceutically acceptable excipient” also encompasses “pharmaceutically acceptable carrier” and “pharmaceutically acceptable diluent” .
The particular excipient used will depend upon the means and purpose for which the compounds of the present disclosure is being applied. Solvents are generally selected based on solvents recognized by persons skilled in the art as safe to be administered to a mammal including humans. In general, safe solvents are non-toxic aqueous solvents such as water and other non-toxic solvents that are soluble or miscible in water. Suitable aqueous solvents include water, ethanol, propylene glycol, polyethylene glycols (e.g., PEG 400, PEG 300) , etc. and mixtures thereof.
In some embodiments, suitable excipients may include buffers such as phosphate, citrate and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol) ; low molecular weight (less than about 10 residues) polypeptides; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine, or lysine; monosaccharides, disaccharides and other carbohydrates including glucose, mannose, or dextrins; chelating agents such as EDTA; sugars such as sucrose, mannitol, trehalose or sorbitol; salt-forming counter-ions such as sodium; metal complexes (e.g., Zn-protein complexes) ; and/or non-ionic surfactants such as TWEEN
TM, PLURONICS
TM or polyethylene glycol (PEG) .
In some embodiments, suitable excipients may include one or more stabilizing agents, surfactants, wetting agents, lubricating agents, emulsifiers, suspending agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants, sweeteners, perfuming agents, flavoring agents and other known additives to provide an elegant presentation of the drug (i.e., a compound of the present disclosure or pharmaceutical composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e., medicament) . The active pharmaceutical ingredients may also be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsules and poly- (methylmethacylate) microcapsules, respectively, in colloidal drug delivery systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions. Such techniques are disclosed in Remington's Pharmaceutical Sciences 16th edition, Osol, A. Ed. (1980) . A “liposome” is a small vesicle composed of various types of lipids, phospholipids and/or surfactant which is useful for delivery of a drug (such as the compounds disclosed herein and, optionally, a chemotherapeutic agent) to a mammal including humans. The components of the liposome are commonly arranged in a bilayer formation, similar to the lipid arrangement of biological membranes.
The pharmaceutical compositions provided herein can be in any form that allows for the composition to be administered to a subject, including, but not limited to a human, and formulated to be compatible with an intended route of administration.
A variety of routes are contemplated for the pharmaceutical compositions provided herein, and accordingly the pharmaceutical composition provided herein may be supplied in bulk or in unit dosage form depending on the intended administration route. For example, for oral, buccal, and sublingual administration, powders, suspensions, granules, tablets, pills, capsules, gelcaps, and caplets may be acceptable as solid dosage forms, and emulsions, syrups, elixirs, suspensions, and solutions may be acceptable as liquid dosage forms. For injection administration, emulsions and suspensions may be acceptable as liquid dosage forms, and a powder suitable for reconstitution with an appropriate solution as solid dosage forms. For inhalation administration, solutions, sprays, dry powders, and aerosols may be acceptable dosage form. For topical (including buccal and sublingual) or transdermal administration, powders, sprays, ointments, pastes, creams, lotions, gels, solutions, and patches may be acceptable dosage form. For vaginal administration, pessaries, tampons, creams, gels, pastes, foams and spray may be acceptable dosage form.
The quantity of active ingredient in a unit dosage form of composition is a therapeutically effective amount and is varied according to the particular treatment involved. As used herein, the term “therapeutically effective amount” refers to an amount of a molecule, compound, or composition comprising the molecule or compound to treat, ameliorate, or prevent an identified disease or condition, or to exhibit a detectable therapeutic or inhibitory effect. The effect can be detected by any assay method known in the art. The precise effective amount for a subject will depend upon the subject’s body weight, size, and health; the nature and extent of the condition; the rate of administration; the therapeutic or combination of therapeutics selected for administration; and the discretion of the prescribing physician. Therapeutically effective amounts for a given situation can be determined by routine experimentation that is within the skill and judgment of the clinician.
In some embodiments, the pharmaceutical compositions of the present disclosure may be in a form of formulation for oral administration.
In certain embodiments, the pharmaceutical compositions of the present disclosure may be in the form of tablet formulations. Suitable pharmaceutically- acceptable excipients for a tablet formulation include, for example, inert diluents such as lactose, sodium carbonate, calcium phosphate or calcium carbonate, granulating and disintegrating agents such as corn starch or algenic acid; binding agents such as starch; lubricating agents such as magnesium stearate, stearic acid or talc; preservative agents such as ethyl or propyl p-hydroxybenzoate, and anti-oxidants, such as ascorbic acid. Tablet formulations may be uncoated or coated either to modify their disintegration and the subsequent absorption of the active ingredient within the gastrointestinal tract, or to improve their stability and/or appearance, in either case using conventional coating agents and procedures well known in the art.
In certain embodiments, the pharmaceutical compositions of the present disclosure may be in a form of hard gelatin capsules in which the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin, or as soft gelatin capsules in which the active ingredient is mixed with water or an oil such as peanut oil, liquid paraffin, or olive oil.
In certain embodiments, the pharmaceutical compositions of the present disclosure may be in the form of aqueous suspensions, which generally contain the active ingredient in finely powdered form together with one or more suspending agents, such as sodium carboxymethylcellulose, methylcellulose, hydroxypropylmethylcellulose, sodium alginate, polyvinyl-pyrrolidone, gum tragacanth and gum acacia; dispersing or wetting agents such as lecithin or condensation products of an alkylene oxide with fatty acids (for example polyoxethylene stearate) , or condensation products of ethylene oxide with long chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation products of ethylene oxide with partial esters derived from fatty acids and a hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides, for example polyethylene sorbitan monooleate. The aqueous suspensions may also contain one or more preservatives (such as ethyl or propyl p-hydroxybenzoate, anti-oxidants (such as ascorbic acid) , coloring agents, flavoring agents, and/or sweetening agents (such as sucrose, saccharine or aspartame) .
In certain embodiments, the pharmaceutical compositions of the present disclosure may be in the form of oily suspensions, which generally contain suspended active ingredient in a vegetable oil (such as arachis oil, olive oil, sesame oil or coconut oil) or in a mineral oil (such as liquid paraffin) . The oily suspensions may also contain a thickening agent such as beeswax, hard paraffin or cetyl alcohol. Sweetening agents such as those set out above, and flavoring agents may be added to provide a palatable oral preparation. These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid.
In certain embodiments, the pharmaceutical compositions of the present disclosure may be in the form of oil-in-water emulsions. The oily phase may be a vegetable oil, such as olive oil or arachis oil, or a mineral oil, such as for example liquid paraffin or a mixture of any of these. Suitable emulsifying agents may be, for example, naturally-occurring gums such as gum acacia or gum tragacanth, naturally-occurring phosphatides such as soya bean, lecithin, esters or partial esters derived from fatty acids and hexitol anhydrides (for example sorbitan monooleate) and condensation products of the said partial esters with ethylene oxide such as polyoxyethylene sorbitan monooleate. The emulsions may also contain sweetening, flavoring and preservative agents.
In certain embodiments, the pharmaceutical compositions provided herein may be in the form of syrups and elixirs, which may contain sweetening agents such as glycerol, propylene glycol, sorbitol, aspartame or sucrose, a demulcent, a preservative, a flavoring and/or coloring agent.
In some embodiments, the pharmaceutical compositions of the present disclosure may be in a form of formulation for injection administration.
In certain embodiments, the pharmaceutical compositions of the present disclosure may be in the form of a sterile injectable preparation, such as a sterile injectable aqueous or oleaginous suspension. This suspension may be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents, which have been mentioned above. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or solvent, such as a solution in 1, 3-butanediol or prepared as a lyophilized powder. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile fixed oils may conventionally be employed as a solvent or suspending medium. For this purpose any bland fixed oil may be employed including synthetic mono-or diglycerides. In addition, fatty acids such as oleic acid may likewise be used in the preparation of injectables.
In some embodiments, the pharmaceutical compositions of the present disclosure may be in a form of formulation for inhalation administration.
In certain embodiments, the pharmaceutical compositions of the present disclosure may be in the form of aqueous and nonaqueous (e.g., in a fluorocarbon propellant) aerosols containing any appropriate solvents and optionally other compounds such as, but not limited to, stabilizers, antimicrobial agents, antioxidants, pH modifiers, surfactants, bioavailability modifiers and combinations of these. The carriers and stabilizers vary with the requirements of the particular compound, but typically include nonionic surfactants (Tweens, Pluronics, or polyethylene glycol) , innocuous proteins like serum albumin, sorbitan esters, oleic acid, lecithin, amino acids such as glycine, buffers, salts, sugars or sugar alcohols.
In some embodiments, the pharmaceutical compositions of the present disclosure may be in a form of formulation for topical or transdermal administration.
In certain embodiments, the pharmaceutical compositions provided herein may be in the form of creams, ointments, gels and aqueous or oily solutions or suspensions, which may generally be obtained by formulating an active ingredient with a conventional, topically acceptable excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
In certain embodiments, the pharmaceutical compositions provided herein may be formulated in the form of transdermal skin patches that are well known to those of ordinary skill in the art.
Besides those representative dosage forms described above, pharmaceutically acceptable excipients and carriers are generally known to those skilled in the art and are thus included in the present disclosure. Such excipients and carriers are described, for example, in “Remingtons Pharmaceutical Sciences” Mack Pub. Co., New Jersey (1991) , in “Remington: The Science and Practice of Pharmacy” , Ed. University of the Sciences in Philadelphia, 21
st Edition, LWW (2005) , which are incorporated herein by reference.
In some embodiments, the pharmaceutical compositions of the present disclosure can be formulated as a single dosage form. The amount of the compounds provided herein in the single dosage form will vary depending on the subject treated and particular mode of administration.
In some embodiments, the pharmaceutical compositions of the present disclosure can be formulated so that a dosage of between 0.001-1000 mg/kg body weight/day, for example, 0.01-800 mg/kg body weight/day, 0.01-700 mg/kg body weight/day, 0.01-600 mg/kg body weight/day, 0.01-500 mg/kg body weight/day, 0.01-400 mg/kg body weight/day, 0.01-300 mg/kg body weight/day, 0.1-200 mg/kg body weight/day, 0.1-150 mg/kg body weight/day, 0.1-100 mg/kg body weight/day, 0.5-100 mg/kg body weight/day, 0.5-80 mg/kg body weight/day, 0.5-60 mg/kg body weight/day, 0.5-50 mg/kg body weight/day, 1-50 mg/kg body weight/day, 1-45 mg/kg body weight/day, 1-40 mg/kg body weight/day, 1-35 mg/kg body weight/day, 1-30 mg/kg body weight/day, 1-25 mg/kg body weight/day of the compounds provided herein, or a pharmaceutically acceptable salt thereof, can be administered. In some instances, dosage levels below the lower limit of the aforesaid range may be more than adequate, while in other cases still larger doses may be employed without causing any harmful side effect, provided that such larger doses are first divided into several small doses for administration throughout the day. For further information on routes of administration and dosage regimes, see Chapter 25.3 in Volume 5 of Comprehensive Medicinal Chemistry (Corwin Hansch; Chairman of Editorial Board) , Pergamon Press 1990, which is specifically incorporated herein by reference.
In some embodiments, the pharmaceutical compositions of the present disclosure can be formulated as short-acting, fast-releasing, long-acting, and sustained-releasing. Accordingly, the pharmaceutical formulations of the present disclosure may also be formulated for controlled release or for slow release.
In a further aspect, there is also provided veterinary compositions comprising one or more molecules or compounds of the present disclosure or pharmaceutically acceptable salts thereof and a veterinary carrier. Veterinary carriers are materials useful for the purpose of administering the composition and may be solid, liquid or gaseous materials which are otherwise inert or acceptable in the veterinary art and are compatible with the active ingredient. These veterinary compositions may be administered parenterally, orally or by any other desired route.
The pharmaceutical compositions or veterinary compositions may be packaged in a variety of ways depending upon the method used for administering the drug. For example, an article for distribution can include a container having deposited therein the compositions in an appropriate form. Suitable containers are well known to those skilled in the art and include materials such as bottles (plastic and glass) , sachets, ampoules, plastic bags, metal cylinders, and the like. The container may also include a tamper-proof assemblage to prevent indiscreet access to the contents of the package. In addition, the container has deposited thereon a label that describes the contents of the container. The label may also include appropriate warnings. The compositions may also be packaged in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water, for injection immediately prior to use. Extemporaneous injection solutions and suspensions are prepared from sterile powders, granules and tablets of the kind previously described.
Method of Use
The compound of Formula (I) or pharmaceutically acceptable salts thereof are capable of inhibiting the activity of a TAM kinase. For example, the compound of the disclosure can be used to inhibit activity of a TAM kinase in a cell or in a subject in need of inhibition of the kinases by administering an inhibiting amount of the compound of the disclosure to the cell or subject. The inhibitory properties of the compound may be demonstrated using the test procedures set out herein.
As used herein, the term “cell” refers to a cell that is in vitro, ex vivo or in vivo. In some embodiments, an ex vivo cell can be part of a tissue sample excised from an organism such as a mammal. In some embodiments, an in vitro cell can be a cell in a cell culture. In some embodiments, an in vivo cell is a cell living in an organism such as a mammal.
As used herein, a “subject” refers to a human and a non-human animal. Examples of a non-human animal include all vertebrates, e.g., mammals, such as non-human primates (particularly higher primates) , dog, rodent (e.g., mouse or rat) , guinea pig, cat, and non-mammals, such as birds, amphibians, reptiles, etc. In a preferred embodiment, the subject is a human. In another embodiment, the subject is an experimental animal or animal suitable as a disease model.
In some embodiments, the compound of the disclosure or pharmaceutically acceptable salts thereof are selective for the TAM kinases over one or more of other kinases. In some embodiments, the selectivity is 2-fold or more, 3-fold or more, 5-fold or more, 10-fold or more, 25-fold or more, 50-fold or more, or 100-fold or more.
In some embodiments, the compound of the disclosure or pharmaceutically acceptable salts thereof can inhibit one or more of AXL, MER and TYRO3. In some embodiments, the compound of the disclosure or pharmaceutically acceptable salts thereof are selective for one TAM kinase over another.
As used herein, the term “selective” means that the compound binds to or inhibits a TAM kinase with greater affinity or potency, compared to a reference enzyme, such as another TAM kinase or kinases other than TAM kinases.
For example, the compound of the disclosure or pharmaceutically acceptable salts thereof can be selective for AXL over MER and TYRO3, selective for MER over AXL and TYRO3, or selective for AXL and MER over TYRO3. In some embodiments, the compound of the disclosure or pharmaceutically acceptable salts thereof inhibit all of the TAM family members (e.g., AXL, MER and TYRO3) . In some embodiments, the compound of the disclosure or pharmaceutically acceptable salts thereof can be selective for AXL and MER over TYRO3 and other kinases.
Accordingly, in one aspect, the present disclosure provides a method for inhibiting a TAM kinase, which comprises contacting the TAM kinase with the compound provided herein, or a pharmaceutically acceptable salt thereof.
In a further aspect, the present disclosure provides a method for inhibiting AXL and MER kinases, which comprises contacting the AXL and MER kinases with the compound provided herein, or a pharmaceutically acceptable salt thereof.
As used herein, the term “contacting” refers to the bringing together of indicated moieties in an in vitro system or an in vivo system. For example, “contacting” the TAM kinase with the compound provided herein or a pharmaceutically acceptable salt thereof includes the administration of the compound provided herein, or a pharmaceutically acceptable salt thereof to a subject having the TAM kinase, as well as, for example, introducing the compound provided herein or a pharmaceutically acceptable salt thereof into a sample containing a cellular or purified preparation containing the TAM kinase.
Since the compound of the present disclosure or pharmaceutically acceptable salts thereof has an inhibitory activity against TAM kinases, they are useful in the treatment (therapeutic or prophylactic) of conditions or diseases associated with TAM kinases.
As used herein, the term “therapy” or “therapeutic” is intended to have its normal meaning of dealing with a disease in order to entirely or partially relieve one, some or all of its symptoms, or to correct or compensate for the underlying pathology, thereby achieving beneficial or desired clinical results. For purposes of this disclosure, beneficial or desired clinical results include, but are not limited to, alleviation of symptoms, diminishment of extent of disease, stabilized (i.e., not worsening) state of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total) , whether detectable or undetectable. “Therapy” can also mean prolonging survival as compared to expected survival if not receiving it. Those in need of therapy include those already with the condition or disorder as well as those prone to have the condition or disorder or those in which the condition or disorder is to be prevented.
As used herein, the term “prophylaxis” or “prophylactic” is intended to have its normal meaning and includes primary prophylaxis to prevent the development of the disease and secondary prophylaxis whereby the disease has already developed and the patient is temporarily or permanently protected against exacerbation or worsening of the disease or the development of new symptoms associated with the disease.
In some embodiments, the conditions or diseases associated with TAM kinases include proliferative disorders such as cancers, kidney diseases, immune system diseases, circulatory system diseases and viral diseases.
In some embodiments, the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of cancer, for example but not limited to leukemia (e.g., acute myeloid leukemia, chronic myeloid leukemia, acute lymphatic leukemia) , melanoma, glioma, lymphoma (e.g., chronic lymphocytic lymphoma, B-cell lymphoma, cutaneous T-cell lymphoma, Hodgkin’s or non-Hodgkin’s lymphoma, hairy cell lymphoma, chronic myelogenic lymphoma, acute lymphoblastic lymphoma, AIDS-related lymphomas, and Burkitt’s lymphoma) , bladder cancer, breast cancer, cervical cancer, colorectal cancer, small intestine cancer, large intestine cancer, colon cancer, rectal cancer, cancer of the anus, endometrial cancer, gastric cancer, head and neck cancer (e.g., cancers of the larynx, hypopharynx, nasopharynx, oropharynx, lips, and mouth) , kidney cancer, liver cancer (e.g., hepatocellular carcinoma, cholangiocellular carcinoma) , lung cancer (e.g., adenocarcinoma, small cell lung cancer and non-small cell lung carcinomas, parvicellular and non-parvicellular carcinoma, bronchial carcinoma, bronchial adenoma, pleuropulmonary blastoma) , ovarian cancer, prostate cancer, testicular cancer, uterine cancer, esophageal cancer, gall bladder cancer, pancreatic cancer (e.g. exocrine pancreatic carcinoma) , stomach cancer, thyroid cancer, parathyroid cancer, skin cancer (e.g., squamous cell carcinoma, Kaposi sarcoma, Merkel cell skin cancer) , and brain cancer (e.g., astrocytoma, medulloblastoma, ependymoma, neuro-ectodermal tumors, pineal tumors) .
In some embodiments, the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of kidney diseases, for example but not limited to glomerular nephritis, chronic nephritis, IgA nephritis, sequential (secondary) nephritis, nephrosis nephritis, acute renal failure, chronic renal failure, diabetic nephropathy, gouty nephropathy, interstitial nephritis, and nephro-pyelitis.
In some embodiments, the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of immune system disease, for example but not limited to psoriasis and rheumatoid arthritis.
In some embodiments, the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of circulatory system diseases, for example but not limited to atherosclerosis and thrombosis.
In some embodiments, the compound provided herein or pharmaceutically acceptable salts thereof are useful for the treatment of viral diseases such as viral infections. Examples of viruses causing infections include but are not limited to human immunodeficiency virus, papillomavirus, influenza virus, hepatitis A, B, C or D viruses, adenovirus, poxvirus, herpes viruses (e.g., N7N, HSV-1, HAV-6, HSVII, and CMV, Epstein Barr virus) , human cytomegalovirus, severe acute respiratory syndrome virus, respiratory syncytial virus, ebola virus, Marburg virus, measles virus, flaviviruses (e.g., West Nile, dengue, tick-home encephalitis, yellow fever, Zika) , echovirus, rhinovirus, coxsackie virus, comovirus, mumpsvirus, rotavirus, rubella virus, parvovirus, vaccinia virus, HTLV virus, dengue virus, molluscum virus, poliovirus, rabies virus, JC virus and arboviral encephalitis virus.
The compound provided herein or pharmaceutically acceptable salts thereof can be used as a metastasis suppressing agent to cancer cell.
Combination Use
The compound provided herein or pharmaceutically acceptable salts thereof may be used in combination with one or more additional pharmaceutical agents or therapies in order to supplement and/or enhance the preventive and/or therapeutic effect of the compound, to improve the kinetics, improvement of absorption, and reduction of the dose of the compound; and/or to eliminate the side effects of the compound.
The compound provided herein or pharmaceutically acceptable salts thereof can be administered simultaneously (as a single preparation or separate preparation) or sequentially to the additional pharmaceutical agents or therapies. In the sequential administration, the compound provided herein or pharmaceutically acceptable salts thereof may be administered before the additional pharmaceutical agents or therapies. Alternatively, the additional pharmaceutical agents or therapies may be administered before the compound provided herein or pharmaceutically acceptable salts. The method for the administration of these pharmaceutical agents or therapies may be the same as each other or different from each other.
Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of cancer include, but are not limited to chemotherapeutic agents, targeted cancer therapies, immunotherapy or radiation therapy, for example, alkylating agents (e.g., nitrogen mustard N-oxide hydrochloride, cyclophosphamide, ifosfa-mide, melphalan, thiotepa, carboquone, busulfan, nimustine hydrochloride, dacarbazine, ranimustine, carmustine, chlorambucil, bendamustine, and mechlorethamine) , antimetabolites (e.g., folic acid antagonists, pyrimidine analogs, purine analogs and adenosine deaminase inhibitors) , anticancer antibiotics (e.g., actinomycin D, mitomycin C, daunorubicin hydrochloride, doxorubicin hydrochloride, aclarubicin hydrochloride, neocarzinostatin, pirarubicin hydrochloride, epirubicin (hydrochloride) , idarubicin hydrochloride, chromomycin A3, bleomycin (hydrochloride) , peplomycin sulfate, therarubicin, zinostatin stimalamer, gemtuzumab ozogamicin) , plant alkaloids, hormones, platinum compounds, anti-CD20 antibodies (e.g., rituximab, ibritumomab, ibritumomab tiuxetan, and ocreli-zumab. ) , anti-CD52 antibodies (e.g., alemtuzumab) , anti-PD-1 antibodies (e.g., nivolumab, pembrolizumab) , an adoptive cell transfer, an angiogenesis inhibitor, Bacillus Calmette-Guerin therapy, biochemotherapy, a cancer vaccine, a chimeric antigen receptor (CAR) T-cell therapy, a cytokine therapy, gene therapy, an immune checkpoint modulator, an immunoconjugate, a radioconjugate, an oncolytic virus therapy, a targeted drug therapy, G-CSF formulations (e.g., pegfilgrastim, filgrastim, lenograstim, and nartograstim) , acute promyelocytic leukemia differentiation-inducing agents, topoisomerase inhibitors (e.g., topotecan, teniposide, irinotecan, and sobuzoxane) , aromatase inhibitors (e.g., exemestane) , kinase inhibitors or antibodies (against, for example, EGFR, Her2, VEGFR, c-Met, PI3, JAK, Ret, IGFR1, PDGFR, FGFR1, FGFR2, FGFR3, FGFR4, TrkA, TrkB, TrkC, ROS, c-Kit, Fit-3, CSF1R, Bcr-Abl or EML4-Alk) , and other anticancer agents (e.g., BET inhibitors, HDAC inhibitors, Bcl2 inhibitors, beta catenin pathway inhibitors, notch pathway inhibitors, hedgehog pathway inhibitors) .
Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of kidney diseases include but are not limited to steroids, immunosuppressants (e.g., azathioprine, ascomycin, everolimus, salazosulfapyridine, cyclosporine, cyclophosphamide, sirolimus, tacrolimus, bucillamine, methotrexate, and leflunomide) , angiotensin II antagonistic drugs (e.g., losartan, candesartan, valsartan, irbesartan, olm-esartan, telmisartan) , angiotensin-converting enzyme inhibitors (e.g., alacepril, imidapril hydrochloride, quinapril hydrochloride, temocapril hydrochloride, delapril hydrochloride, benazepril hydrochloride, captopril, trandolapril, perindopril erbumine, enalapril maleate, lisinopril) , antiplatelet drugs (e.g., dipyridamole, and dilazep hydrochloride hydrate) , and anticoagulant drugs (e.g., dipyridamole, dilazep hydrochloride hydrate, apixaban, dabigatran, edoxaban, fondaparinex, heparin, rivaroxaban, and warfarin) .
Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of immune system diseases include but are not limited to immunosuppressants, steroid, diseasemodifying anti-rheumatic drugs, prostaglandins, prostaglandin synthase inhibitors, phosphodiesterase inhibitors, metalloprotease inhibitors, anti-cytokine protein formulations such as anti-TNF-α formulations, anti-IL-1 formulations, and anti-IL-6 formulation, cytokine inhibitors, and nonsteroidal anti-inflammatory agents.
Examples of pharmaceutical agents or therapies that can be used in combination with the compound provided herein or pharmaceutically acceptable salts thereof for the treatment of circulatory system diseases include but are not limited to antiplatelet drugs, angiotensin II antagonistic drugs, angiotensin-converting enzyme inhibitors, HMG-CoA reductase inhibitors, and thiazolidine derivatives.
In some embodiments, the compound provided herein or pharmaceutically acceptable salts thereof are used in combination with radiation therapy or surgeries. Radiation is commonly delivered internally (implantation of radioactive material near cancer site) or externally from a machine that employs photon (x-ray or gamma-ray) or particle radiation. Where the combination therapy further comprises radiation treatment, the radiation treatment may be conducted at any suitable time so long as a beneficial effect from the co-action of the combination of the therapeutic agents and radiation treatment is achieved.
Labelled Compounds and Assay Methods
In another aspect, the present disclosure relates to labeled compounds provided herein (radio-labeled, fluorescent-labeled, and the like. ) that would be useful not only in imaging techniques but also in assays, both in vitro and in vivo, for localizing and quantitating TAM kinases in tissue samples, including human, and for identifying TAM kinase ligands by inhibition binding of a labeled compound. Accordingly, the present disclosure includes TAM kinase assays that contain such labeled compounds.
The present disclosure further includes isotopically-labeled compounds provided herein. An “isotopically” or “radio-labeled” compound is a compound provided herein where one or more atoms are replaced or substituted by an atom having an atomic mass or mass number different from the atomic mass or mass number typically found in nature (i.e., naturally occurring) . The radionuclide that is incorporated in the instant radio-labeled compounds will depend on the specific application of that radio-labeled compound. For example, for in vitro TAM kinases labeling and competition assays, compounds that incorporate
3H,
14C,
82Br,
125I,
131I, or
35S will generally be most useful. For radio-imaging applications
11C,
18F,
125I,
123I,
124I,
131I,
75Br,
76Br or
77Br will generally be most useful. Synthetic methods for incorporating radio-isotopes into organic compounds are applicable to the compouns provided herein and are well known in the art.
A radio-labeled compound provided herein can be used in a screening assay to identify/evaluate compounds. In general terms, a newly synthesized or identified compound (i.e., test compound) can be evaluated for its ability to reduce binding of the radio-labeled compound of the application to the TAM kinases. Accordingly, the ability of a test compound to compete with the radio-labeled compound for binding to the TAM kinases directly correlates to its binding affinity.
EXAMPLES
For the purpose of illustration, the following examples are included. However, it is to be understood that these examples do not limit the present disclosure and are only meant to suggest a method of practicing the present disclosure. Persons skilled in the art will recognize that the chemical reactions described may be readily adapted to prepare a number of other compounds of the present disclosure, and alternative methods for preparing the compounds of the present disclosure are deemed to be within the scope of the present disclosure. For example, the synthesis of non-exemplified compounds according to the present disclosure may be successfully performed by modifications apparent to those skilled in the art, e.g., by appropriately protecting interfering groups, by utilizing other suitable reagents and building blocks known in the art other than those described, and/or by making routine modifications of reaction conditions. Alternatively, other reactions disclosed herein or known in the art will be recognized as having applicability for preparing other compounds of the present disclosure.
Example 1
N- (4- {4-amino-1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl} phenyl) -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 1)
Step 1. 3-bromo-4-chloro-1H-pyrazolo [4, 3-c] pyridine
To a solution of 4-chloro-1H-pyrazolo [4, 3-c] pyridine (5 g, 32.558 mmol) in CH
3CN (50 mL) were added NBS (6.4 g, 35.8 mmol) . The reaction was stirred at 60℃overnight. LC-MS showed the reaction was completed. The reaction mixture was extracted with Ethyl Acetate, washed with H
2O and brine, dried over Na
2SO
4, filtered and concentrated in vacuo to give the title product 3-bromo-4-chloro-1H-pyrazolo [4, 3-c] pyridine (7 g, 30.1 mmol, 92.5%) as a white solid. LC/MS (ESI) : m/z 232 (M+H)
+.
Step 2. 3-bromo-N- [ (2, 4-dimethoxyphenyl) methyl] -1H-pyrazolo [4, 3-c] pyridin-4-amine
To a solution of 3-bromo-4-chloro-1H-pyrazolo [4, 3-c] pyridine (7 g, 30.1 mmol) in CH
3CN (80 mL) were added 2, 4-Dimethoxybenzylamine (23 mL, 150 mmol) and DIPEA (19.5 g, 150 mmol) . The reaction was stirred at 80℃ overnight. LC-MS showed the reaction was completed. The reaction was diluted with EA and water, then washed with water and brine, dried over anhydrous Na
2SO
4, filtered and concentrated. The residue was purified by flash column chromatography (Silica gel, 0~100%ethyl acetate in petroleum ether) to afford 3-bromo-N- [ (2, 4-dimethoxyphenyl) methyl] -1H-pyrazolo [4, 3-c] pyridin-4-amine (5.2 g, 14.3 mmol, 47.6%) as a white solid. LC/MS (ESI) : m/z 363 (M+H)
+.
Step 3. 1- [4- (3-bromo-4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1H-pyrazolo [4, 3-c] pyridin-1-yl) piperidin-1-yl] -2-methylpropan-1-one
To a solution of 3-bromo-N- [ (2, 4-dimethoxyphenyl) methyl] -1H-pyrazolo [4, 3-c] pyridin-4-amine (200 mg, 0.551 mmol) in DMF (5 mL) were added 1- (2-methylpropanoyl) piperidin-4-yl methanesulfonate (206 mg, 0.826 mmol) and Cs
2CO
3 (359 mg, 1.10 mmol) . The reaction was stirred at 100℃ overnight. LC-MS showed the reaction was completed. The reaction was diluted with EA and water, then washed with water and brine, dried over anhydrous Na
2SO
4, filtered and concentrated. The residue was purified by flash column chromatography (Silica gel, 0~100%ethyl acetate in petroleum ether) to afford 1- [4- (3-bromo-4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1H-pyrazolo [4, 3-c] pyridin-1-yl) piperidin-1-yl] -2-methylpropan-1-one (185 mg, 0.358 mmol, 65.1%) as white oil. LC/MS (ESI) : m/z 516 (M+H)
+.
Step 4. 1- {4- [3- (4-aminophenyl) -4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1H-pyrazolo [4, 3-c] pyridin-1-yl] piperidin-1-yl} -2-methylpropan-1-one
To a solution of 1- [4- (3-bromo-4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1H-pyrazolo [4, 3-c] pyridin-1-yl) piperidin-1-yl] -2-methylpropan-1-one (160 mg, 0.310 mmol) in dioxane (10 mL) was added 4- (tetramethyl-1, 3, 2-dioxaborolan-2-yl) aniline (135.75 mg, 0.620 mmol) , Pd (dppf) Cl
2 (45.34 mg, 0.062 mmol) , and K
2CO
3 (86 mg, 0.620 mmol) . The reaction was stirred at 100℃ overnight under nitrogen atmosphere. LC-MS showed the reaction was completed. The reaction was diluted with EA and water, then washed with water and brine, dried over anhydrous Na
2SO
4, filtered and concentrated. The residue was purified by flash column chromatography (Silica gel, 0~100%ethyl acetate in petroleum ether) to give the title product 1- {4- [3- (4-aminophenyl) -4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1H-pyrazolo [4, 3-c] pyridin-1-yl] piperidin-1-yl} -2-methylpropan-1-one (140 mg, 0.265 mmol, 85.5%) as an orange solid. LC/MS (ESI) : m/z 529 (M+H)
+.
Step 5. N- [4- (4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl] -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of 1- {4- [3- (4-aminophenyl) -4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1H-pyrazolo [4, 3-c] pyridin-1-yl] piperidin-1-yl} -2-methylpropan-1-one (140 mg, 0.265 mmol) in DMF (8 mL) were added 2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxylic acid (87.47 mg, 0.318 mmol) , HATU (201 mg, 0.530 mmol) and DIPEA (170.81 mg, 1.324 mmol) , and the reaction was stirred at room temperature overnight. LC-MS showed the reaction was completed. The reaction was diluted with EA and water, then washed with water and brine, dried over anhydrous Na
2SO
4, filtered and concentrated. The residue was purified by flash column chromatography (Silica gel, 0~10%MeOH in DCM) to afford the N- [4- (4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl] -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (200 mg, 0.254 mmol, 96.1%) as a white solid. LC/MS (ESI) : m/z 786 (M+H)
+.
Step 6. N- (4- {4-amino-1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl} phenyl) -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of N- [4- (4- { [ (2, 4-dimethoxyphenyl) methyl] amino} -1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl] -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (200 mg, 0.254 mmol) in TFA (7 mL) were added Et
3SiH (0.123 mL, 0.763 mmol) . The reaction was stirred at room temperature for 1 hour. LC-MS showed the reaction was completed. The reaction was diluted with EA and water, then washed with brine, dried over anhydrous Na
2SO
4, filtered and concentrated. The residue was purified by flash column chromatography (Silica gel, 0~10%MeOH in DCM) to afford crude product. Then the crude product was purified by Prep-HPLC (C18, 10-95%, MeCN in H
2O with 0.1%HCOOH) to give N- (4- {4-amino-1- [1- (2-methylpropanoyl) piperidin-4-yl] -1H-pyrazolo [4, 3-c] pyridin-3-yl} phenyl) -2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (60 mg, 0.094 mmol, 37.1%) . LC/MS (ESI) : m/z 636 (M+H)
+.
1H NMR (400 MHz, DMSO-d6) δ 10.89 (s, 1H) , 8.72 (s, 1H) , 8.64 (d, J =4.6 Hz, 1H) , 8.12-8.00 (m, 1H) , 7.84 (d, J = 8.5 Hz, 2H) , 7.77 (d, J = 6.1 Hz, 1H) , 7.62 (d, J = 8.5 Hz, 2H) , 7.57 (t, J = 6.7 Hz, 2H) , 6.98 (d, J = 6.2 Hz, 1H) , 5.88 (s, 2H) , 4.94 –4.64 (m, 2H) , 4.56 (d, J = 11.2 Hz, 1H) , 4.11 (d, J = 12.3 Hz, 1H) , 3.28 –3.03 (m, 1H) , 2.94 (dt, J = 13.3, 6.6 Hz, 1H) , 2.79 (t, J = 12.3 Hz, 1H) , 1.99 (d, J =23.0 Hz, 3H) , 1.89 (s, 1H) , 1.45 (d, J = 6.7 Hz, 6H) , 1.03 (s, 6H) .
Following the procedure in Example 1, the following compounds were also synthesized:
Compound 2:
1H NMR (400 MHz, DMSO-d
6) δ = 10.43 (s, 1H) , 7.84 (dd, J = 4.6, 8.2 Hz, 3H) , 7.76 (d, J = 6.1 Hz, 1H) , 7.57 (d, J = 8.6 Hz, 2H) , 7.50 -7.44 (m, 2H) , 7.41 -7.33 (m, 2H) , 6.96 (d, J = 6.3 Hz, 1H) , 6.51 (d, J = 7.9 Hz, 1H) , 5.82 (br s, 2H) , 4.90 -4.77 (m, 1H) , 4.56 (br d, J = 12.0 Hz, 1H) , 4.25 (q, J = 7.0 Hz, 2H) , 4.19 -4.04 (m, 1H) , 3.28 -3.28 (m, 1H) , 2.94 (td, J = 6.7, 13.5 Hz, 1H) , 2.85 -2.73 (m, 1H) , 2.10 -1.81 (m, 4H) , 1.30 (t, J = 7.0 Hz, 3H) , 1.10 -0.97 (m, 6H) .
Compound 3:
1H NMR (400 MHz, DMSO-d
6) δ = 10.27 (s, 1H) , 10.01 (s, 1H) , 7.80 (d, J =8.6 Hz, 2H) , 7.76 (d, J = 6.1 Hz, 1H) , 7.67 -7.61 (m, 2H) , 7.57 (d, J = 8.6 Hz, 2H) , 7.18 -7.11 (m, 2H) , 6.96 (d, J = 6.1 Hz, 1H) , 5.79 (br s, 2H) , 4.89 -4.77 (m, 1H) , 4.56 (br d, J = 12.3 Hz, 1H) , 4.11 (br d, J = 11.1 Hz, 1H) , 3.28 -3.27 (m, 1H) , 2.93 (td, J = 6.8, 13.5 Hz, 1H) , 2.78 (br t, J = 12.4 Hz, 1H) , 2.12 -1.78 (m, 4H) , 1.48 (s, 4H) , 1.02 (br s, 6H) .
Compound 4:
1H NMR (400 MHz, DMSO-d
6) δ = 11.00 (s, 1H) , 8.65 (s, 1H) , 7.81 (br d, J = 8.4 Hz, 2H) , 7.75 (d, J = 6.1 Hz, 1H) , 7.60 (br d, J = 8.4 Hz, 2H) , 7.46 -7.39 (m, 2H) , 7.38 -7.32 (m, 2H) , 6.95 (d, J = 6.2 Hz, 1H) , 5.77 (br s, 2H) , 4.90 -4.70 (m, 2H) , 4.53 (br d, J = 11.9 Hz, 1H) , 4.09 (br d, J = 13.0 Hz, 1H) , 3.32 -3.20 (m, 1H) , 2.98 -2.87 (m, 1H) , 2.84 -2.72 (m, 1H) , 2.06 -1.91 (m, 3H) , 1.91 -1.79 (m, 1H) , 1.47 -1.35 (m, 6H) , 1.07 -0.95 (m, 6H) .
Compound 5:
1H NMR (400 MHz, DMSO-d6) δ 13.07 (s, 1H) , 8.72 (s, 1H) , 8.17 (s, 1H) , 7.85 (d, J = 8.6 Hz, 2H) , 7.77 (d, J = 6.1 Hz, 1H) , 7.62 (d, J = 8.6 Hz, 2H) , 7.28 (d, J =7.4 Hz, 4H) , 6.96 (d, J = 6.2 Hz, 1H) , 5.81 (s, 2H) , 4.80 (dd, J = 13.3, 6.7 Hz, 2H) , 4.56 (d, J = 12.3 Hz, 1H) , 4.11 (d, J = 11.5 Hz, 1H) , 2.94 (dt, J = 13.5, 6.7 Hz, 1H) , 2.79 (t, J = 11.8 Hz, 1H) , 2.30 (s, 3H) , 2.06 –1.78 (m, 4H) , 1.52 (d, J = 6.6 Hz, 6H) , 1.24 (s, 1H) , 1.03 (s, 6H) .
Example 2
N- (4- (4-amino-1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 6)
Step 1. 1- (4- (3- (4-amino-2-fluorophenyl) -4- ( (2, 4-dimethoxybenzyl) amino) -1H-pyrazolo [4, 3-c] pyridin-1-yl) piperidin-1-yl) -2-methylpropan-1-one
To a stirred solution of 1- [4- [3-bromo-4- [ (2, 4-dimethoxyphenyl) methylamino] pyrazolo [4, 3-c] pyridin-1-yl] -1-piperidyl] -2-methyl-propan-1-one (30 mg, 58.09 μmol) in dioxane (4 mL) and H
2O (1 mL) were added 3-fluoro-4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) aniline (20.66 mg, 87.14 μmol) , K
2CO
3 (24.09 mg, 174.27 μmol) and Pd (dppf) Cl
2 (8.50 mg, 11.62 μmol) under N2. The mixture was heated to 100℃ and stirred for 16h. The mixture was quenched with H
2O (10 mL) , extracted with EtOAc (10 mLx3) . The combined organic phases were concentrated to give the crude product which was purified with flash column chromatography (DCM/THF=100%~50%) to give 1- [4- [3- (4-amino-2-fluoro-phenyl) -4- [ (2, 4-dimethoxyphenyl) methylamino] pyrazolo [4, 3-c] pyridin-1-yl] -1-piperidyl] -2-methyl-propan-1-one (30 mg, 54.88 μmol, 94.47%yield) as yellow oil. LC/MS (ESI) : m/z 547.3 (M+H)
+.
Step 2. N- (4- (4- ( (2, 4-dimethoxybenzyl) amino) -1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a stirred solution of 1- [4- [3- (4-amino-2-fluoro-phenyl) -4- [ (2, 4-dimethoxyphenyl) methylamino] pyrazolo [4, 3-c] pyridin-1-yl] -1-piperidyl] -2-methyl-propan-1-one (30 mg, 54.88 μmol) and 2, 4-dioxo-1- (propan-2-yl) -3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxylic acid (18.13 mg, 65.86 μmol) in DMF (3 mL) were added N-ethyl-N-isopropyl-propan-2-amine (28.37 mg, 219.53 μmol) and HATU (31.30 mg, 82.32 μmol) . The reaction mixture was stirred for 16h at 40℃. The mixture was quenched with H
2O (20 mL) , extracted with EtOAc (10 mLx3) . The combined organic phases were dried with Na
2SO
4 and concentrated to give the crude product which was purified with flash column chromatography (DCM/THF=100%~50%) to give N- (4- (4- ( (2, 4-dimethoxybenzyl) amino) -1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (25 mg, 31.02 μmol, 56.53%yield) as yellow oil. LC/MS (ESI) : m/z 804.4 (M+H)
+.
Step 3. N- (4- (4-amino-1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a stirred solution of N- (4- (4- ( (2, 4-dimethoxybenzyl) amino) -1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (25 mg, 31.02 μmol) in DCM (2 mL) were added TFA (1 mL) and triethylsilane (10.82 mg, 93.07 μmol, 14.86 μL) . The mixture was stirred for 16 h at 20℃. The mixture was basified with aq. sat. NaHCO
3 to pH=8, extracted DCM (10 mLx3) . The combined organic phases were concentrated to give the crude product. The crude product was purified with prep-HPLC (C18, 10-95%, MeCN in H
2O with 0.1%HCOOH) to give N- (4- (4-amino-1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) -3-fluorophenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (12 mg, 18.34 μmol, 59.12%yield, 98%purity) . LC/MS (ESI) : m/z 654.3 (M+H)
+.
1H NMR (400 MHz, DMSO-d
6) δ = 10.98 (s, 1H) , 8.70 (s, 1H) , 8.63 (dd, J =1.7, 5.1 Hz, 1H) , 8.05 (dt, J = 1.8, 7.8 Hz, 1H) , 7.95 -7.88 (m, 1H) , 7.74 (d, J = 6.2 Hz, 1H) , 7.59 -7.53 (m, 2H) , 7.52 -7.43 (m, 2H) , 6.96 (d, J = 6.2 Hz, 1H) , 5.68 (br s, 2H) , 4.92 -4.69 (m, 2H) , 4.52 (br d, J = 12.5 Hz, 1H) , 4.09 (br d, J = 12.3 Hz, 1H) , 3.33 -3.20 (m, 2H) , 2.91 (td, J = 6.7, 13.5 Hz, 1H) , 2.78 (br t, J = 12.6 Hz, 1H) , 2.03 -1.91 (m, 3H) , 1.89 -1.75 (m, 1H) , 1.42 (d, J = 6.7 Hz, 6H) , 1.08 -0.94 (m, 6H) .
Following the procedure in Example 2, the following compounds were also synthesized:
Compound 7:
1H NMR (500 MHz, DMSO-d
6) δ = 10.66 (s, 1H) , 7.84 (s, 1H) , 7.83 -7.81 (m, 1H) , 7.74 (d, J = 6.3 Hz, 1H) , 7.52 -7.48 (m, 1H) , 7.47 -7.43 (m, 3H) , 7.38 -7.33 (m, 2H) , 6.96 (d, J = 6.3 Hz, 1H) , 6.51 (d, J = 7.9 Hz, 1H) , 5.66 (br s, 2H) , 4.87 -4.78 (m, 1H) , 4.58 -4.47 (m, 1H) , 4.24 (q, J = 7.0 Hz, 2H) , 4.15 -4.04 (m, 1H) , 3.27 (br s, 1H) , 2.97 -2.88 (m, 1H) , 2.83 -2.72 (m, 1H) , 2.05 -1.92 (m, 3H) , 1.88 -1.79 (m, 1H) , 1.33 -1.26 (m, 3H) , 1.03 -0.97 (m, 6H) .
Compound 8:
1H NMR (500 MHz, DMSO-d
6) δ = 11.16 (d, J = 2.5 Hz, 1H) , 8.73 (s, 1H) , 8.65 -8.61 (m, 1H) , 8.54 (t, J = 8.4 Hz, 1H) , 8.06 (dt, J = 1.9, 7.7 Hz, 1H) , 7.76 (d, J = 6.0 Hz, 1H) , 7.58 -7.51 (m, 3H) , 7.51 -7.47 (m, 1H) , 6.97 (d, J = 6.3 Hz, 1H) , 5.85 (br s, 2H) , 4.86 -4.79 (m, 1H) , 4.79 -4.73 (m, 1H) , 4.56 -4.49 (m, 1H) , 4.14 -4.05 (m, 1H) , 3.28 -3.23 (m, 1H) , 2.96 -2.89 (m, 1H) , 2.83 -2.74 (m, 1H) , 2.04 -1.92 (m, 3H) , 1.91 -1.83 (m, 1H) , 1.46 -1.39 (m, 6H) , 1.05 -0.97 (m, 6H) .
Compound 9:
1H NMR (500 MHz, DMSO-d
6) δ = 10.97 (s, 1H) , 8.40 -8.33 (m, 1H) , 7.92 -7.85 (m, 1H) , 7.80 -7.72 (m, 1H) , 7.52 -7.43 (m, 4H) , 7.40 -7.33 (m, 2H) , 7.00 -6.93 (m, 1H) , 6.57 -6.51 (m, 1H) , 5.88 -5.79 (m, 2H) , 4.88 -4.76 (m, 1H) , 4.58 -4.49 (m, 1H) , 4.31 -4.22 (m, 2H) , 4.15 -4.05 (m, 1H) , 3.31 -3.25 (m, 1H) , 2.96 -2.89 (m, 1H) , 2.83 -2.73 (m, 1H) , 2.06 -1.93 (m, 3H) , 1.91 -1.82 (m, 1H) , 1.38 -1.30 (m, 3H) , 1.05 -0.96 (m, 6H) .
Compound 10:
1H NMR (400 MHz, DMSO-d
6) δ = 11.29 (s, 1H) , 8.75 (s, 1H) , 8.63 (d, J =3.9 Hz, 1H) , 8.54 (d, J = 2.3 Hz, 1H) , 8.35 (d, J = 8.7 Hz, 1H) , 8.12 -8.02 (m, 2H) , 7.77 (d, J = 6.1 Hz, 1H) , 7.59 -7.53 (m, 2H) , 6.98 (d, J = 6.3 Hz, 1H) , 5.87 (s, 2H) , 4.88 -4.80 (m, 1H) , 4.80 -4.73 (m, 1H) , 4.57 -4.50 (m, 1H) , 2.96 -2.87 (m, 2H) , 2.84 -2.72 (m, 2H) , 2.07 -1.95 (m, 3H) , 1.92 -1.81 (m, 1H) , 1.48 -1.39 (m, 6H) , 1.05 -0.96 (m, 6H) .
Example 3
N- (4- (8-amino-3- (1-isobutyrylpiperidin-4-yl) imidazo [1, 5-a] pyrazin-1-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 12)
Step 1. 3-bromo-8-chloroimidazo [1, 5-a] pyrazine
To a solution of compound 12-1 (0.900 g, 5.86 mmol, 1.00 eq) in THF (10.0 mL) was cooled down to -78 ℃, n-BuLi (2.50 M, 4.69 mL, 2.00 eq) was added drop wise at -78 ℃ and the mixture was stirred at -78 ℃ for 15 min. A solution of BrCN (620 mg, 5.86 mmol, 431 uL, 1.00 eq) in THF (8.00 mL) was added during 30 mim. After the addition completed, the mixture was warm up to 25 ℃ and stirred for another 30 mim. LC-MS showed one main peak with desired mass was detected. The reaction mixture was quenched by addition sat. aq NH
4Cl (20.0 mL) at 0 ℃, and then extracted with EtOAc (30.0 mL *2) . The combined organic layers were washed with brine (50.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, Petroleum ether: EtOAc = 3: 1, Petroleum ether: EtOAc = 1: 0 to 0: 1) . Compound 12-2 (484 mg, 2.08 mmol, 35.53%yield) was obtained as a white solid and confirmed by H NMR.
H NMR (400 MHz, DMSO-d
6) δ 8.18 (dd, J
1 = 4.0 Hz, J
2 = 2.0 Hz, 1H) , 7.89 (d, J = 2.0 Hz, 1H) , 7.54 (d, J = 4.0 Hz, 1H) .
Step 2. 3-bromo-8-chloro-1-iodoimidazo [1, 5-a] pyrazine
To a solution of compound 12-2 (484 mg, 2.08 mmol, 1.00 eq) in DMF (5.00 mL) was added NIS (702 mg, 3.12 mmol, 1.50 eq) at 0 ℃. The mixture was stirred at 60 ℃ for 8 hrs. LC-MS showed compound 12-2 was consumed completely and one main peak with desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, Petroleum ether: EtOAc = 1: 1, Petroleum ether: EtOAc = 1: 0 to 0: 1) . Compound 12-3 (370 mg, 1.03 mmol, 49.59%yield) was obtained as a light yellow solid and confirmed by H NMR.
H NMR (400 MHz, CDCl
3) δ 7.80 (d, J = 4.0 Hz, 1H) , 7.46 (d, J = 4.0 Hz, 1H) .
Step 3. 3-bromo-1-iodoimidazo [1, 5-a] pyrazin-8-amine
Compound 12-3 (370 mg, 1.03 mmol, 1.00 eq) and NH
3 (26.3 mg, 1.55 mmol, 1.50 eq) were taken up into a microwave tube in i-PrOH (5.00 mL) . The sealed tube was heated at 100 ℃ for 2 hrs under microwave. LC-MS showed compound 12-3 was consumed completely and one main peak with desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. The crude product was triturated with EtOAc (5.00 mL) at 25 ℃ for 30 min. Compound 12-4 (320 mg, crude) was obtained as a yellow solid and confirmed by H NMR.
H NMR (400 MHz, DMSO-d
6) δ 7.50 (d, J = 4.0 Hz, 1H) , 7.35 -7.03 (m, 3H) .
Step 4. 1- (4-aminophenyl) -3-bromoimidazo [1, 5-a] pyrazin-8-amine
A mixture of compound 12-4 (120 mg, 354 μmol, 1.00 eq) , compound 12-5 (77.5 mg, 354μmol , 1.00 eq) , Pd (PPh
3)
4 (40.9 mg, 35.4 μmol , 0.1.00 eq) , K
2CO
3 (102 mg, 743μmol , 2.10 eq) and H
2O (0.300 mL) in dioxane (1.20 mL) was degassed and purged with N
2 for 3 times, and then the mixture was stirred at 90 ℃ for 4 hrs under N
2 atmosphere. LC-MS showed compound 12-4 was consumed completely and one main peak with desired mass was detected. The reaction mixture was filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1) . Compound 12-6 (90.0 mg, 287 μmol, 81.1%yield, 97.1%purity) was obtained as a yellow solid and confirmed by LC-MS.
LC-MS: (M+H)
+: 305.9.
Step 5. 1- (4- (8-amino-1- (4-aminophenyl) imidazo [1, 5-a] pyrazin-3-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
A mixture of compound 12-6 (100 mg, 328μmol , 1.00 eq) , compound 12-7 (183 mg, 657 μmol, 2.00 eq) , Pd (PPh
3)
4 (37.9 mg, 32.8 μmol, 0.100 eq) , K
2CO
3 (136 mg, 986 μmol, 3.00 eq) and H
2O (0.200 mL) in dioxane (1.00 mL) was degassed and purged with N
2 for 3 times, and then the mixture was stirred at 90 ℃ for 8 hrs under N
2 atmosphere. LC-MS showed compound 12-6 was consumed completely and one main peak with desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . Compound 12-8 (60.0 mg, 159 μmol, 48.48%yield) was obtained as a yellow solid.
Step 6. 1- (4- (8-amino-1- (4-aminophenyl) imidazo [1, 5-a] pyrazin-3-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 12-8 (60.0 mg, 159 μmol, 1.00 eq) in MeOH (1.00 mL) was added Pd/C (10.0%, 60.0 mg) under N
2 atmosphere. The suspension was degassed and purged with H
2 for 3 times. The mixture was stirred under H
2 (15 Psi) at 25 ℃ for 2 hrs. LC-MS showed compound 12-8 was consumed completely. The reaction mixture was filtered and concentrated under reduced pressure to give a residue. Compound 12-9 (40.0 mg, crude) was obtained as a yellow solid.
Step 7. N- (4- (8-amino-3- (1-isobutyrylpiperidin-4-yl) imidazo [1, 5-a] pyrazin-1-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 12-8 (35.0 mg, 92.4 μmol, 1.00 eq) in Py (1.00 mL) was added EDCI (35.4 mg, 184 μmol, 2.00 eq) . The mixture was stirred at 25 ℃ for 2 hrs. LC-MS showed compound 12-8 was consumed completely and desired mass was detected. The reaction mixture was diluted with DCM (15.0 mL) and washed with water (10.0 mL *2) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was combined with a similar reaction run on a 5.00 mg scale for further purification. The mixture was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) and purified by prep-HPLC (basic condition, column: Waters Xbridge C18 150 *50 mm *10 um; mobile phase: [water (NH
4HCO
3) -ACN] ; B%: 29%-59%, 8 min) . Compound 12 (5.49 mg, 8.09 μmol, 8.75%yield, 93.7%purity) was obtained as confirmed by H NMR, LC-MS, HPLC.
H NMR (400 MHz, CDCl
3) δ 10.9 (s, 1H) , 8.79 -8.66 (m, 2H) , 7.99 (td, J
1 =8.0 Hz, J
2 = 2.0 Hz, 1H) , 7.79 (d, J = 8.0 Hz, 2H) , 7.59 (d, J = 8.0 Hz, 2H) , 7.54 -7.49 (m, 1H) , 7.39 (d, J = 8.0 Hz, 1H) , 7.26 -7.24 (m, 1H) , 7.00 (d, J = 8.0 Hz, 1H) , 5.06 -4.92 (m, 1H) , 4.72 (d, J = 12.0 Hz, 1H) , 4.14 (d, J = 12.0 Hz, 1H) , 3.32 -3.17 (m, 2H) , 2.89 -2.80 (m, 2H) , 2.19 -2.01 (m, 3H) , 1.97 -1.82 (m, 1H) , 1.50 (d, J = 8.0 Hz, 6H) , 1.14 (d, J = 4.0 Hz, 6H) .
LC-MS (M+H)
+: 636.2.
HPLC: Purity: 93.7% (254 nm) .
Example 4
N- (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 15)
Step 1. 6-bromo-1-chloropyrrolo [1, 2-a] pyrazine
To a solution of compound 15-1 (1.00 g, 6.55 mmol, 1.00 eq) in MeCN (15.0 mL) was added NBS (1.28 g, 7.21 mmol, 1.10 eq) , the mixture was stirred at 90 ℃for 3 hrs. TLC showed compound 15-1 was consumed and new spot was formed. LC-MS showed the desired mass was detected. The mixture was concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc = 1: 0 to 50: 1) . Compound 15-2 (1.00 g, 4.32 mmol, 65.9%yield) was obtained as white solid.
H NMR (400 MHz, CDCl
3) δ 7.83 -7.81 (m, 1H) , 7.46 (d, J = 4.8 Hz, 1H) , 6.99 -6.92 (m, 2H) .
Step 2. 6-bromo-1-chloro-8-iodopyrrolo [1, 2-a] pyrazine
To a solution of compound 15-2 (950 mg, 4.10 mmol, 1.00 eq) in MeCN (10.0 mL) was added NIS (923 mg, 4.10 mmol, 1.00 eq) , the mixture was stirred at 80 ℃ for 5 hrs. LC-MS showed the desired mass was detected. The mixture was concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc = 1: 0 to 50: 1) to get the desired product compound 15-3 (1.30 g, 3.64 mmol, 88.6%yield) as white solid.
H NMR (400 MHz, DMSO-d
6) δ 8.25 (d, J = 4.8 Hz, 1H) , 7.49 (d, J = 4.8 Hz, 1H) , 7.41 (s, 1H) .
Step 3. 6-bromo-8-iodo-N- (4-methoxybenzyl) pyrrolo [1, 2-a] pyrazin-1-amine
Compound 15-3 (1.30 g, 3.64 mmol, 1.00 eq) , PMBNH
2 (1.50 g, 10.9 mmol, 1.41 mL, 3.00 eq) and DIEA (940 mg, 7.28 mmol, 1.27 mL, 2.00 eq) were taken up into a microwave tube in NMP (13.0 mL) . The sealed tube was heated at 100℃ for 8 hrs under microwave. LC-MS showed the desired mass was detected. The reaction mixture was diluted with water (50.0 mL) , extracted with EtOAc (20.0 mL *3) , the combined organic layer was washed with brine (40.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc = 1: 0 to 20: 1) to get the desired product compound 15-4 (1.15 g, 2.51 mmol, 69.0%yield, -purity) as white solid.
H NMR (400 MHz, CDCl
3) δ 7.41 -7.35 (m, 3H) , 7.24 (d, J = 4.8 Hz, 1H) , 6.91 (d, J = 8.8 Hz, 2H) , 6.76 (s, 1H) , 6.46 (br s, 1H) , 4.70 (d, J = 4.8 Hz, 2H) , 3.82 (s, 3H) .
Step 4. 8- (4-aminophenyl) -6-bromo-N- (4-methoxybenzyl) pyrrolo [1, 2-a] pyrazin-1-amine
To a solution of compound 15-4 (1.15 g, 2.51 mmol, 1.00 eq) , compound 15-5 (495 mg, 2.26 mmol, 0.900 eq) in dioxane (20.0 mL) , H
2O (2.00 mL) was added K
2CO
3 (694 mg, 5.02 mmol, 2.00 eq) , Pd (PPh
3)
4 (290 mg, 251 μmol, 0.100 eq) at N
2 atmosphere, the mixture was stirred at 100 ℃ for 10 hrs. LC-MS showed the desired mass was detected. The mixture was filtered and concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc =1: 0 to 4: 1) to get the desired product compound 15-6 (550 mg, 1.30 mmol, 51.7%yield) as yellow solid.
H NMR (400 MHz, DMSO-d
6) δ 7.42 (d, J = 4.8 Hz, 1H) , 7.17 (d, J = 4.8 Hz, 1H) , 7.12 -7.06 (m, 4H) , 6.85 -6.83 (m, 2H) , 6.72 (s, 1H) , 6.60 -6.58 (m, 2H) , 5.46 (t, J = 5.6 Hz, 1H) , 5.26 (s, 2H) , 4.48 (d, J = 5.6 Hz, 2H) , 3.72 (s, 3H) .
Step 5. 1- (4- (8- (4-aminophenyl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 15-6 (500 mg, 1.18 mmol, 1.00 eq) , compound 15-7 (363 mg, 1.30 mmol, 1.10 eq) in dioxane (10.0 mL) , H
2O (1.00 mL) was added K
2CO
3 (327 mg, 2.36 mmol, 2.00 eq) , Pd (PPh
3)
4 (137 mg, 118 μmol, 0.100 eq) at N
2 atmosphere, the mixture was stirred at 90 ℃ for 12 hrs. LC-MS showed the compound 15-6 was consumed and desired mass detected. The mixture was filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-HPLC (column: Phenomenex luna C18 150 *40 mm *15 um; mobile phase: [water (FA) -ACN] ; B%: 17%-47%, 10 min) to get the desired product compound 15-8 (300 mg, 605 μmol, 51.2%yield, -purity) as yellow solid.
H NMR (400 MHz, DMSO-d
6) δ 7.69 (brs, 1H) , 7.22 -6.99 (m, 6H) , 6.92 -6.84 (m, 2H) , 6.69 -6.57 (m, 3H) , 6.09 (brs, 1H) , 5.64 (brs, 1H) , 4.48 (d, J = 5.2 Hz, 2H) , 4.28 (brs, 1H) , 4.20 -4.16 (m, 1H) , 3.72 (s, 5H) , 3.33 (brs, 2H) , 2.96 -2.88 (m, 2H) , 1.04 -1.02 (m, 6H) .
Step 6. 1- (4- (8- (4-aminophenyl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 15-8 (250 mg, 504 μmol, 1.00 eq) in MeOH (5.00 mL) was added Pd/C (50.0 mg, 10%purity) , then degassed and purged with H
2 three times, the mixture was stirred at 25 ℃ for 2 hrs (15 psi) . LC-MS showed compound 15-8 was consumed and desired mass was detected. The mixture was filtered and concentrated under reduced pressure to get the desired product compound 15-9 (250 mg, 502 μmol, 99.5%yield) as yellow solid.
Step 7. 1- (4- (1-amino-8- (4-aminophenyl) pyrrolo [1, 2-a] pyrazin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 15-9 (150 mg, 301 μmol, 1.00 eq) in DCM (2.00 mL) was added TFA (3.08 g, 27.0 mmol, 2.00 mL, 89.6 eq) at 0 ℃, the mixture was stirred at 50 ℃ for 24 hrs. LC-MS showed compound 15-9 was consumed completed and desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (20.0 mL) and water (10.0 mL) , extracted with DCM (30.0 mL *3) , the combined organic layer was washed with brine (50.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to get the desired product compound 15-10 (100 mg, 264 μmol, 87.8%yield) as yellow solid.
Step 8. N- (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 15-11 (65.6 mg, 238 μmol, 1.00 eq) in DMF (1.00 mL) was added DIEA (154 mg, 1.19 mmol, 207 uL, 5.00 eq) , HATU (181 mg, 477 μmol, 2.00 eq) and stirred for 0.5 hr, then compound 15-10 (90.0 mg, 238 μmol, 1.00 eq) was added, the mixture was stirred at 25 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The mixture was filtered. The filtrate was purified by Prep-HPLC (column: Phenomenex C18 75 *30 mm *3 um; mobile phase: [water (FA) -ACN] ; B%: 18%-48%, 7 min) . The residue was purified by Prep-HPLC (column: Welch Ultimate XB-SiOH 250 *50 *10 um; mobile phase: [Hexane-EtOH] ; B%: 30%-70%, 15 min) to get the desired product Compound 15 (7.46 mg, 10.7 μmol, 4.51%yield, 91.4%purity) .
H NMR (400 MHz, CDCl
3) δ 10.82 (s, 1H) , 8.77 (d, J = 3.6 Hz, 1H) , 8.71 (s, 1H) , 8.12 -8.10 (m, 1H) , 7.79 (d, J = 8.4 Hz, 2H) , 7.64 -7.61 (m, 1H) , 7.50 (d, J =8.0 Hz, 1H) , 7.38 (d, J = 8.0 Hz, 2H) , 7.31 (d, J = 4.8 Hz, 1H) , 6.88 -6.87 (m, 1H) , 6.62 (s, 1H) , 5.00 -4.85 (m, 2H) , 4.12 (s, 1H) , 3.26 -3.07 (m, 2H) , 2.87 -2.71 (m, 2H) , 2.11 -2.05 (m, 2H) , 1.72 -1.67 (m, 2H) , 1.52 (d, J = 6.8 Hz, 6H) , 1.16 (d, J =6.4 Hz, 6H) .
LC-MS (M+H)
+: 635.5
HPLC: 91.5%purity (215 nm)
Example 5
N- (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -4-ethoxy-1- (4-fluorophenyl) -2-oxo-1, 2-dihydropyridine-3-carboxamide (Compound 16)
Step 1. 4-ethoxy-1- (4-fluorophenyl) -N- (4- (6- (1-isobutyrylpiperidin-4-yl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -2-oxo-1, 2-dihydropyridine-3-carboxamide
To a solution of compound 16-2 (55.1 mg, 198 μmol, 1.10 eq) in DMF (1.00 mL) was added HATU (103 mg, 271 μmol, 1.50 eq) , DIEA (117 mg, 904 μmol, 157 μL, 5.00 eq) , the mixture was stirred at 25℃ for 0.5 h, then compound 16-1 (90.0 mg, 180 μmol, 1.00 eq) was added and stirred at 25 ℃ for 5 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (5.00 mL) and water (5.00 mL) , extracted with EtOAc (5.00 mL *3) , the combined organic layer was washed with brine (10.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC to get the desired product compound 16-3 (100 mg, 132 μmol, 73.0%yield) as yellow solid.
Step 2. N- (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -4-ethoxy-1- (4-fluorophenyl) -2-oxo-1, 2-dihydropyridine-3-carboxamide
To a solution of compound 16-3 (100 mg, 132 μmol, 1.00 eq) in DCM (1.00 mL) was added TFA (1.54 g, 13.5 mmol, 1.00 mL, 102 eq) , the mixture was stirred at 50℃ for 12 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (10.0 mL) and water (3.00 mL) , extracted with DCM (5.00 mL *3) , the combined organic layer was washed with brine (10.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-HPLC (column: Phenomenex luna C18 150 *25mm *10um; mobile phase: [water (FA) -ACN] ; B%: 65%-95%, 2 min) to get the desired product Compound 16 (23.87 mg, 36.9 μmol, 27.98%yield, 98.6%purity) .
H NMR (400 MHz, CDCl
3) δ 11.37 (s, 1H) , 7.76 (d, J = 8.4 Hz, 1H) , 7.50 (d, J = 8.0 Hz, 1H) , 7.40 -7.36 (m, 4H) , 7.24 -7.22 (m, 2H) , 7.07 (d, J = 4.8 Hz, 1H) , 6.45 (s, 1H) , 6.36 (d, J = 8.0 Hz, 1H) , 5.06 (brs, 1H) , 4.82 (d, J = 13.2 Hz, 1H) , 4.39 -4.33 (m, 2H) , 4.10 (d, J = 13.2 Hz, 1H) , 3.23 (t, J = 12.8 Hz, 1H) , 3.10 -3.05 (m, 1H) , 2.89 -2.82 (m, 1H) , 2.78 -2.71 (m, 1H) , 2.15 -2.09 (m, 2H) , 1.70 -1.65 (m, 2H) , 1.59 (t, J = 6.4 Hz, 6H) , 1.16 (d, J = 6.0 Hz, 6H) .
LC-MS (M+H)
+: 637.7.
HPLC: 98.6%purity (220 nm) .
Example 6
N- (4- (3-amino-7- (1-isobutyrylpiperidin-4-yl) - [1, 2, 4] triazolo [4, 3-a] pyridin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 17)
Step 1. 4-bromo-2-chloro-6-hydrazineylpyridine
To a solution of compound 17-1 (12.8 g, 56.5 mmol, 1.00 eq) in dioxane (130 mL) was added N
2H
4·H
2O (57.7 g, 979 mmol, 56.0 mL, 85.0%purity, 17.4 eq) . The mixture was stirred at 50℃ for 12 hrs. LC-MS showed there was desired mass detected. TLC indicated there was new spot. Water (60.0 mL) was added into the mixture. The mixture was extracted with EtOAc (150 mL *3) . The combined organic layers were washed with brine (100 mL *2) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (basic condition; column: Welch Ultimate XB -CN 250 *70 *10 um; mobile phase: [Hexane -EtOH (0.1%NH
3·H
2O) ] ; B%: 1%-40%, 15 min) . Compound 17-2 (7.00 g, 28.9 mmol, 51.2%yield, 91.9%purity) was obtained as a pink solid. H NMR (400 MHz, DMSO-d6) : δ 8.21 (s, 1H) , 6.87 (s, 1H) , 6.77 (d, J =1.6 Hz, 1H) , 4.33 (s, 2H) . LC-MS (M+H)
+: 223.9.
Step 2. ethyl (7-bromo-5-chloro- [1, 2, 4] triazolo [4, 3-a] pyridin-3-yl) carbamate
To a solution of compound 17-2 (2.00 g, 8.26 mmol, 91.9%purity, 1.00 eq) in 2-methyltetrahydrofuran (30.0 mL) was added compound 17-3 (1.30 g, 9.92 mmol, 1.17 mL, 1.20 eq) , then the mixture was stirred at 20 ℃ for 1 min. TLC showed the starting material was consumed completely. The mixture was concentrated under reduced pressure. Then the mixture was dissolved in DCM (20.0 mL) . And the mixture was added compound 17-4 (1.84 g, 7.19 mmol, 0.87 eq) and TEA (919 mg, 9.09 mmol, 1.27 mL, 1.10 eq) , then stirred at 20 ℃ for 1 min. TLC indicated there were new spots. The mixture was concentrated under reduced pressure. The residue was purified by column chromatography (SiO
2, PE: EtOAc = 1: 0 to 100: 51) . Compound 17-5 (1.27 g, 3.96 mmol, 47.9%yield, 99.5%purity) was obtained as a yellow solid.
H NMR (400 MHz, CDCl
3) : δ 7.87 (s, 1H) , 7.59 (s, 1H) , 7.00 (d, J = 0.8 Hz, 1H) , 4.28 -4.23 (m, 2H) , 1.30 -1.27 (m, 3H) . LC-MS (M+H)
+: 320.9.
Step 3. 1- (4- (3-amino-5-chloro- [1, 2, 4] triazolo [4, 3-a] pyridin-7-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 17-5 (900 mg, 2.81 mmol, 99.5%purity, 1.00 eq) , compound 17-6 (744 mg, 2.66 mmol, 0.95 eq) in dioxane (7.50 mL) was added Na
2CO
3 (297 mg, 2.81 mmol, 1.00 eq) in H
2O (1.50 mL) and Pd (PPh
3)
2Cl
2 (196 mg, 280 μmol, 0.10 eq) . The mixture was taken up into a microwave tube. The sealed tube was heated at 120 ℃ for 4 hrs under microwave. LC-MS showed there was desired mass detected. TLC showed there were new spots. The reaction mixture was filtered and the filter was concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC. Compound 17-7 (410 mg, 1.04 mmol, 37.1%yield, 81.3%purity) was obtained as a yellow solid.
H NMR (400 MHz, CDCl
3) : δ 7.31 -7.26 (m, 1H) , 6.78 -6.72 (m, 1H) , 6.29 -6.20 (m, 1H) , 5.14 (s, 2H) , 4.30 -4.25 (m, 2H) , 3.84 -3.74 (m, 2H) , 2.90 -2.81 (m, 1H) , 2.56 -2.50 (m, 2H) , 1.19 -1.15 (m, 6H) .
LC-MS (M+H)
+: 320.1.
Step 4. 1- (4- (3-amino-5- (4-aminophenyl) - [1, 2, 4] triazolo [4, 3-a] pyridin-7-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 17-7 (310 mg, 788 μmol, 81.3%purity, 1.00 eq) and compound 17-8 (345 mg, 1.58 mmol, 2.00 eq) in dioxane (5.00 mL) was added K
3PO
4 (501 mg, 2.36 mmol, 3.00 eq) in H
2O (1.00 mL) and XPHOS-PD-G2 (93.0 mg, 118 μmol, 0.15 eq) . The mixture was degassed and purged with N
2 for 3 times, then stirred at 100 ℃ for 12 hrs. LC-MS showed there was desired mass detected. TLC indicated there were new spots. The solution was filtered and the filter was concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, DCM: MeOH = 100: 0 to 100: 3) . Compound 17-9 (193 mg, 500 μmol, 63.4%yield, 97.6%purity) was obtained as a yellow solid.
H NMR (400 MHz, CDCl
3) : δ 7.50 -7.48 (m, 1H) , 7.39 -7.27 (m, 2H) , 6.82 -6.77 (m, 2H) , 6.61 -6.58 (m, 1H) , 6.32 -6.23 (m, 1H) , 4.42 -4.40 (m, 2H) , 4.31 -4.25 (m, 2H) , 3.88 -3.87 (m, 1H) , 3.79 -3.76 (m, 1H) , 2.94 -2.91 (m, 1H) , 2.64 -2.57 (m, 2H) , 1.22 -1.17 (m, 6H) .
LC-MS (M+H)
+: 377.1.
Step 5. 1- (4- (3-amino-5- (4-aminophenyl) imidazo [1, 2-a] pyridin-7-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 17-9 (193 mg, 500 μmol, 97.6%purity, 1.00 eq) in MeOH (3.00 mL) was added Pd/C (20.0 mg, 10.0%purity) , degassed and purged with H
2 (15 psi) for 3 times, then stirred at 20 ℃ for 4 hrs. LC-MS showed there was desired mass detected and the starting material was consumed (~95.0 %) . TLC indicated there were new spots. TLC indicated the starting material was consumed completely (KMnO
4) . The mixture was filtered and filter was concentrated under reduced pressure to give a residue. Compound 17-10 (120 mg, 317 μmol, 63.3%yield) was obtained as a light yellow solid.
H NMR (400 MHz, CDCl
3) : δ 7.28 (s, 1H) , 7.26 -7.24 (m, 2H) , 6.80 -6.78 (m, 2H) , 6.32 (d, J = 1.2 Hz, 1H) , 4.85 (d, J = 12.0 Hz, 1H) , 4.26 (s, 2H) , 4.11 (d, J =12.8 Hz, 1H) , 3.19 -3.13 (m, 1H) , 2.89 -2.82 (m, 1H) , 2.78 -2.71 (m, 1H) , 2.67 -2.61 (m, 1H) , 2.02 -1.95 (m, 2H) , 1.65 -1.59 (m, 2H) , 1.18 -1.15 (m, 6H) .
Step 6. N- (4- (3-amino-7- (1-isobutyrylpiperidin-4-yl) - [1, 2, 4] triazolo [4, 3-a] pyridin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 17-10 (50.0 mg, 132 μmol, 1.00 eq) and compound 17-11 (36.3 mg, 132 μmol, 1.00 eq) in pyridine (3.00 mL) was added EDCI (101 mg, 528 μmol, 4.00 eq) . Then the mixture was stirred at 20 ℃ for 1 hr. LC-MS showed there was desired mass detected. The mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC. Compound 17 (25.0 mg, 38.2 μmol, 28.9%yield, 97.2%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR (400 MHz, CDCl
3) : δ 10.98 (s, 1H) , 8.75 -8.71 (m, 2H) , 8.02 -7.97 (m, 1H) , 7.82 -7.80 (m, 2H) , 7.53 -7.50 (m, 1H) , 7.45 -7.38 (m, 3H) , 7.28 -7.27 (m, 1H) , 6.36 (s, 1H) , 5.01 -4.97 (m, 1H) , 4.85 -4.82 (m, 1H) , 4.09 (s, 3H) , 3.18 -3.12 (m, 1H) , 2.87 -2.81 (m, 1H) , 2.78 -2.72 (m, 1H) , 2.66 -2.60 (m, 1H) , 2.01 -1.95 (m, 2H) , 1.64 -1.58 (m, 2H) , 1.52 -1.51 (m, 6H) , 1.14 -1.13 (m, 6H) .
LC-MS (M+H)
+: 636.4.
HPLC: purity: 97.2% (220 nm) .
Example 7
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 18)
Step 1. 2-amino-4-bromo-6-fluorobenzonitrile
Two reactions were carried out in parallel. To a solution of compound 18-1 (12.5 g, 57.3 mmol, 1.00 eq) in i-PrOH (20.0 mL) was added NH
3·H
2O (43.1 g, 344 mmol, 47.3 mL, 28.0%purity, 6.00 eq) . The mixture was stirred at 80 ℃ for 36 hrs. LC-MS showed no desired mass was detected. TLC indicated the starting material was consumed completely and there was new spot. Two reactions were combined for work-up. The reaction mixture was poured into water (200 mL) . A white solid was filtered and washed with water. The solid was dissolved with EtOAc (200 mL) . The organic layer was dried over Na
2SO
4, then the solvent was evaporated under reduced pressure. Compound 18-2 (24.2 g, 112 mmol, 98.1%yield) was obtained as a white solid.
H NMR (400 MHz, CDCl
3) : δ 6.73 (s, 1H) , 6.68 (d, J = 8.4 Hz, 1H) , 4.62 (s, 2H) .
Step 2. 4-bromo-2-fluoro-6-iodobenzonitrile
To a solution of compound 18-2 (4.00 g, 18.6 mmol, 1.00 eq) in H
2O (40.0 mL) and HCl (12.0 M, 40.0 mL, 25.8 eq) was added NaNO
2 (1.93 g, 27.9 mmol, 1.50 eq) in H
2O (10.0 mL) at 0 ℃. Then the mixture was added MeCN (30.0 mL) stirred at 0 ℃ for 10 mins. And the mixture was added KI (7.72 g, 46.5 mmol, 2.50 eq) in H
2O (10.0 mL) at 0 ℃. The mixture was stirred at 20 ℃ for 6 hrs. LC-MS showed no desired mass detected. TLC showed the starting material was consumed completely. TLC indicated there were new spots. The reaction mixture was extracted with EtOAc (100 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, PE: EtOAc = 100: 0 to 100: 3) . Compound 18-3 (3.50 g, 10.7 mmol, 57.7%yield) was obtained as a white solid.
H NMR (400 MHz, CDCl
3) δ 7.92 (d, J = 1.2 Hz, 1H) , 7.46 -7.42 (m, 1H) .
Step 3. 6-bromo-4-iodo-1H-indazol-3-amine
To a solution of compound 18-3 (3.00 g, 9.21 mmol, 1.00 eq) in butan-1-ol (30.0 mL) was added N
2H
4·H
2O (1.04 g, 20.34 mmol, 1.00 mL, 98.0%purity, 2.21 eq) . Then the mixture was stirred at 110 ℃ for 6 hrs. LC-MS showed there was desired mass detected. The mixture was filtered. And the solid was washed by MeOH (20.0 mL *3) and dried under reduced pressure to give a residue. Compound 18-4 (2.60 g, 7.42 mmol, 80.6%yield, 96.4%purity) was obtained as a white solid. F NMR showed there was not F in the structure of desired mass.
H NMR: (400 MHz, DMSO-d6) δ 11.91 (s, 1H) , 7.50 (s, 1H) , 7.46 (s, 1H) , 5.12 (s, 2H) . LC-M (M+H)
+: 337.9.
Step 4. 2- (6-bromo-4-iodo-1H-indazol-3-yl) isoindoline-1, 3-dione
To a solution of compound 18-4 (2.00 g, 5.71 mmol, 96.4%purity, 1.00 eq) in DMF (20.0 mL) was added compound 18-5 (1.27 g, 8.56 mmol, 1.50 eq) . Then the mixture was stirred at 140 ℃ for 4 hrs. LC-MS showed there was desired mass detected. The mixture can be purified directly. The mixture was purified by prep-HPLC. Compound 18-6 (1.62 g, 3.16 mmol, 55.2%yield, 91.1%purity) was obtained as a off-white solid.
H NMR (400 MHz, DMSO-d6) δ 13.97 (s, 1H) , 8.11 -8.10 (m, 2H) , 8.00 -7.99 (m, 2H) , 7.97 -7.96 (m, 1H) , 7.80 (s, 1H) .
LC-MS: (M+H)
+: 467.9.
HPLC: purity: 97.0% (220 nm) .
Step 5. 2- (6-bromo-4-iodo-1-methyl-1H-indazol-3-yl) isoindoline-1, 3-dione
To a solution of compound 18-6 (500 mg, 974 μmol, 91.1%purity, 1.00 eq) in DMF (5.00 mL) was added K
2CO
3 (134 mg, 974 μmol, 1.00 eq) and MeI (138 mg, 976 μmol, 60.7 uL, 1.00 eq) at 0 ℃. Then the mixture was stirred at 20 ℃ for 3 hrs under N
2 atmosphere. LC-MS showed there was desired mass detected. The mixture was poured into water (20.0 mL) and filtered. Then the solid was washed by water (10.0 mL *3) . Compound 18-7 (600 mg, crude) was obtained as a white solid.
Step 6. 6-bromo-4-iodo-1-methyl-1H-indazol-3-amine
To a solution of compound 18-7 (600 mg, 1.24 mmol, 1.00 eq) in MeOH (5.00 mL) and DCM (5.00 mL) was added N
2H
4·H
2O (1.50 g, 29.3 mmol, 1.46 mL, 98.0%purity, 23.5 eq) . The mixture was stirred at 20 ℃ for 2 hrs. TLC indicated the starting material was consumed completely. LC-MS showed there was desired mass detected. The mixture was washed by water (10.0 mL) , the water was extracted with EtOAc (5.00 mL *3) . The combined organic layers was dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, PE: EtOAc = 100: 20 to 100: 40) . Compound 18-8 (300 mg, 841 μmol, 67.6%yield, 98.7%purity) was obtained as a white solid.
H NMR (400 MHz, CDCl
3) : δ 7.59 -7.58 (m, 1H) , 7.42 (s, 1H) , 4.56 (s, 2H) , 3.86 (s, 3H) . LC-MS (M+H)
+: 351.9.
Step 7. 4- (4-aminophenyl) -6-bromo-1-methyl-1H-indazol-3-amine
To a solution of compound 18-8 (185 mg, 519 μmol, 98.7%purity, 1.00 eq) and compound 18-9 (102 mg, 467 μmol, 0.90 eq) in THF (6.00 mL) was added K
2CO
3 (150 mg, 1.09 mmol, 2.10 eq) in H
2O (1.50 mL) and Pd (PPh
3)
4 (59.9 mg, 51.9 μmol, 0.10 eq) . The mixture was degassed and purged with N
2 for 3 times, then stirred at 80 ℃ for 8 hrs. LC-MS showed there was desired mass detected. TLC indicated there were new spots. The mixture was extracted by EtOAc (10.0 mL*3) . The combined organic layers was dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC. Compound 18-10 (110 mg, 326 μmol, 62.9%yield, 94.1%purity) was obtained as a off-white solid.
H NMR (400 MHz, CDCl
3) δ 7.32 -7.31 (m, 2H) , 7.28 -7.27 (m, 1H) , 6.98 (s, 1H) , 6.80 -6.78 (m, 2H) , 3.82 (s, 3H) .
LC-MS (M+H)
+: 318.9.
Step 8. 1- (4- (3-amino-4- (4-aminophenyl) -1-methyl-1H-indazol-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 18-10 (110 mg, 326 μmol, 94.1%purity, 1.00 eq) and compound 18-11 (182 mg, 652 μmol, 2.00 eq) in dioxane (12.0 mL) was added K
2CO
3 (90.2 mg, 652 μmol, 2.00 eq) in H
2O (3.00 mL) and Pd (PPh
3)
4 (37.7 mg, 32.6 μmol, 0.10 eq) under N
2 atmosphere. Then the mixture was stirred at 90 ℃ for 12 hrs. LC-MS showed there was desired mass detected. TLC indicated there were new spots. The mixture was poured into water (10.0 mL) and extracted with EtOAc (10.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC. Compound 18-12 (141 mg, crude) was obtained as a yellow solid.
H NMR (400 MHz, CDCl
3) δ 7.33 -7.31 (m, 2H) , 7.06 (s, 1H) , 6.93 -6.92 (m, 1H) , 6.81 -6.79 (m, 2H) , 6.22 -6.15 (m, 1H) , 4.27 -4.23 (m, 2H) , 3.87 -3.85 (m, 1H) , 3.82 (s, 3H) , 3.79 -3.74 (m, 1H) , 2.92 -2.87 (m, 1H) , 2.69 -2.64 (m, 2H) , 1.16 -1.13 (m, 6H) .
Step 9. 1- (4- (3-amino-4- (4-aminophenyl) -1-methyl-1H-indazol-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 18-12 (141 mg, 362 μmol, 1.00 eq) in MeOH (3.00 mL) was added Pd/C (14.0 mg, 10%purity) , degassed and purged with H
2 (15 psi) for 3 times, then stirred at 20 ℃ for 2 hrs. Then the mixture was stirred at 20 ℃for 4 hrs. LC-MS indicated the starting material was consumed completely and there was desired mass detected. The mixture was filtered and filter was concentrated under reduced pressure to give a residue. Compound 18-13 (65.0 mg, 162 μmol, 44.9%yield, 98.0%purity) was obtained as a white solid.
H NMR (400 MHz, CDCl
3) : δ 7.33 -7.31 (m, 2H) , 6.93 (s, 1H) , 6.81 -6.78 (m, 2H) , 6.72 (s, 1H) , 4.88 -4.85 (m, 1H) , 4.11 -4.08 (m, 1H) , 3.84 (s, 3H) , 3.20 -3.17 (m, 1H) , 2.90 -2.85 (m, 2H) , 2.66 -2.64 (m, 1H) , 2.03 -2.00 (m, 2H) , 1.73 -1.71 (m, 2H) , 1.17 -1.12 (m, 6H) .
LC-MS (M+H)
+: 392.3
Step 10. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 18-13 (25.5 mg, 63.8 μmol, 98.0%purity, 1.00 eq) and compound 18-14 (16.7 mg, 60.6 μmol, 0.95 eq) in pyridine (2.00 mL) was added EDCI (48.9 mg, 255 μmol, 4.00 eq) . Then the mixture was stirred at 20 ℃for 2 hrs. LC-MS showed there was desired mass detected. The mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC. Compound 18 (8.00 mg, 12.0 μmol, 18.8%yield, 97.6%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, CDCl
3) δ 10.83 (s, 1H) , 8.76 -8.75 (m, 1H) , 8.72 (s, 1H) , 7.99 -7.98 (m, 1H) , 7.77 -7.75 (m, 2H) , 7.52 -7.48 (m, 3H) , 7.41 -7.39 (m, 1H) , 6.97 (s, 1H) , 6.75 (s, 1H) , 5.02 -4.95 (m, 1H) , 4.88 -4.85 (m, 1H) , 4.12 -4.09 (m, 1H) , 3.85 (s, 3H) , 3.78 (s, 2H) , 3.20 -3.17 (m, 1H) , 2.89 -2.83 (m, 2H) , 2.66 -2.64 (m, 1H) , 2.05 -2.01 (m, 2H) , 1.73 -1.70 (m, 2H) , 1.52 -1.50 (m, 6H) , 1.19 -1.17 (m, 6H) .
LC-MS (M+H)
+: 649.4.
HPLC: purity: 97.6% (220 nm) .
Example 8
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) - [1, 2, 3] triazolo [1, 5-a] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 23)
Step 1. diethyl 2- (5-bromo-3-chloropyridin-2-yl) malonate
To a solution of compound 23-1 (10.0 g, 47.5 mmol, 1.00 eq) , compound 23-2 (15.2 g, 95.0 mmol, 14.3 mL, 2.00 eq) in DMSO (100 mL) was added Cs
2CO
3 (30.9 g, 95.0 mmol, 2.00 eq) , the mixture was stirred at 100 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The mixture was filtered and diluted with water (300 mL) , extracted with EtOAc (100 mL *3) , the combined organic layer was washed with brine (200 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to get the desired product compound 23-3 (16.0 g, 45.6 mmol, 96.0%yield) as yellow oil.
H NMR: (400 MHz, CDCl
3) δ 8.55 (d, J = 2.0 Hz, 1H) , 7.89 (d, J = 2.0 Hz, 1H) , 5.14 (s, 1H) , 4.31 -4.26 (m, 4H) , 1.28 (t, J = 7.2 Hz, 6H) .
Step 2. ethyl 2- (5-bromo-3-chloropyridin-2-yl) acetate
To a solution of compound 23-3 (8.00 g, 22.8 mmol, 1.00 eq) in DMSO (160 mL) was added LiCl (1.93 g, 45.6 mmol, 2.00 eq) , H
2O (411 mg, 22.8 mmol, 411 μL, 1.00 eq) , the mixture was stirred at 100 ℃ for 4 hrs. The mixture was heated to 120 ℃ for 10 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with water (500 mL) , extracted with EtOAc (150 mL *3) , the combined organic layer was washed with brine (300 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to get the desired product ethyl compound 23-4 (6.00 g, 21.5 mmol, 94.4%yield) as yellow oil.
H NMR: (400 MHz, CDCl
3) δ 8.52 (d, J = 2.0 Hz, 1H) , 7.87 (d, J = 2.0 Hz, 1H) , 4.21 -4.19 (m, 2H) , 3.96 (s, 2H) , 1.28 -1.26 (m, 3H) .
Step 3. ethyl 6-bromo-4-chloro- [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylate
To a solution of compound 23-4 (5.00 g, 17.9 mmol, 1.00 eq) in ACN (50.0 mL) was added DBU (9.57 g, 62.8 mmol, 9.47 mL, 3.50 eq) at 0 ℃ under N
2 atmosphere, then compound 23-5 (6.47 g, 26.9 mmol, 1.50 eq) was added in portions at 0 ℃, the mixture was stirred at 0 ℃ for 4 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with water (50.0 mL) , extracted with EtOAc (30.0 mL *3) , the combined organic layer was washed with brine (70.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc = 1: 0 to 10: 1, Plate 1, PE: EtOAc = 5: 1, R
f = 0.3) to get the desired product compound 23-6 (1.30 g, 4.27 mmol, 23.7%yield) as light yellow solid.
Step 4. ethyl 4-chloro-6- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylate
To a solution of compound 23-6 (700 mg, 2.30 mmol, 1.00 eq) , compound 23-7 (674 mg, 2.41 mmol, 1.05 eq) in dioxane (10.0 mL) , H
2O (2.00 mL) was added Pd (PPh
3)
4 (265mg, 229 μmol, 0.100 eq) , Na
2CO
3 (487 mg, 4.60 mmol, 2.00 eq) under N
2 atmosphere, the mixture was heated at 90 ℃ for 2 hrs. LC-MS showed the desired mass detected. The residue was filtered and concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc = 100: 1 to 1: 1, Plate 1, PE: EtOAc = 1: 1) to get the desired product compound 23-8 (750 mg, 1.99 mmol, 86.5%yield) as yellow solid.
H NMR: (400 MHz, CDCl
3) δ 8.69 -8.66 (m, 1H) , 7.66 (s, 1H) , 6.39 -6.30 (m, 1H) , 4.54 -4.49 (m, 2H) , 4.33 -4.28 (m, 2H) , 3.89 -3.79 (m, 2H) , 2.90 -2.80 (m, 1H) , 2.61 -2.55 (m, 2H) , 1.48 (t, J = 7.2 Hz, 3H) , 1.19 -1.16 (m, 6H) .
Step 5. ethyl 6- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) -4- (4-nitrophenyl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylate
To a solution of compound 23-8 (740 mg, 1.96 mmol, 1.00 eq) , compound 23-9 (393 mg, 2.36 mmol, 1.20 eq) in dioxane (10.0 mL) , H
2O (2.00 mL) was added Na
2CO
3 (624 mg, 5.89 mmol, 3.00 eq) , Pd (PPh
3)
4 (227 mg, 196 μmol, 0.100 eq) at N
2 atmosphere, the mixture was stirred at 80 ℃ for 2 hrs. LC-MS showed the desired mass detected. The mixture was filtered and concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc = 10: 1 to 0: 1, Plate 1, PE: EtOAc = 0: 1, R
f = 0.4) to get the desired product compound 23-10 (650 mg, 1.40 mmol, 71.4%yield) as yellow solid.
H NMR: (400 MHz, CDCl
3) δ 8.85 -8.82 (m, 1H) , 8.34 (d, J = 8.8 Hz, 2H) , 7.58 -7.55 (m, 3H) , 6.43 -6.34 (m, 1H) , 4.34 -4.29 (m, 2H) , 4.20 -4.15 (m, 2H) , 3.91 -3.82 (m, 2H) , 2.92 -2.82 (m, 1H) , 2.68 -2.62 (m, 2H) , 1.28 -1.16 (m, 9H) .
Step 6. ethyl 4- (4-aminophenyl) -6- (1-isobutyrylpiperidin-4-yl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylate
To a solution of compound 23-10 (190 mg, 410 μmol, 1.00 eq) in DCM (2.00 mL) , THF (2.00 mL) was added Pd/C (100 mg, 10%purity) , then degassed and purged with H
2 three times, the mixture was stirred at 20 ℃ for 5 hrs (15 psi) . LC-MS showed the desired mass detected. The mixture was filtered and concentrated to get the desired product compound 23-11 (150 mg, 344 μmol, 84.0%yield) as white solid.
Step 7. ethyl 6- (1-isobutyrylpiperidin-4-yl) -4- (4- (1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamido) phenyl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylate
To a solution of compound 23-11 (150 mg, 344 μmol, 1.00 eq) , compound 23-12 (114 mg, 413 μmol, 1.20 eq) in DMF (2.00 mL) was added DIEA (222 mg, 1.72 mmol, 299 uL, 5.00 eq) , HATU (262 mg, 688 μmol, 2.00 eq) , the mixture was stirred at 20 ℃ for 5 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (3.00 mL) and water (3.00 mL) , extracted with DCM (10.0 mL *3) , the combined organic layer was washed with water (20.0 mL *2) , brine (20.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (Plate 1, DCM: MeOH = 10: 1, R
f = 0.6) to get the desired product compound 23-13 (170 mg, 245 μmol, 71.2%yield) as white solid.
H NMR: (400 MHz, CDCl
3) δ 10.88 (s, 1H) , 8.76 -8.74 (m, 1H) , 8.71 (s, 1H) , 8.63 (brs, 1H) , 8.01 -7.87 (m, 1H) , 7.76 -7.74 (m, 2H) , 7.53 -7.49 (m, 1H) , 7.43 -7.32 (m, 4H) , 5.02 -4.95 (m, 1H) , 4.93 -4.87 (m, 1H) , 4.17 -4.12 (m, 1H) , 4.10 -4.05 (m, 2H) , 3.20 (t, J = 12.4 Hz, 1H) , 2.67 (t, J = 12.4 Hz, 1H) , 2.10 -2.03 (m, 2H) , 1.74 -1.67 (m, 2H) , 1.51 (d, J = 6.8 Hz, 6H) , 1.18 -1.14 (m, 6H) , 1.06 (t, J =7.2 Hz, 3H) .
Step 8. 6- (1-isobutyrylpiperidin-4-yl) -4- (4- (1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamido) phenyl) - [1, 2, 3] triazolo [1, 5-a] pyridine-3-carboxylic acid
To a solution of compound 23-13 (70.0 mg, 101 μmol, 1.00 eq) in toluene (2.50 mL) was added (Bu
3Sn)
2O (120mg, 202 μmol, 103 μL, 2.00 eq) , the mixture was stirred at 110℃ for 24 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. KF (3.00 mL) and water (3.00 mL) , extracted with DCM (5.00 mL *3) , the combined organic layer was washed with brine (10.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, Plate 1, DCM: MeOH = 10: 1, R
f = 0.3) to get the desired product compound 23-14 (60.0 mg, 90.2 μmol, 89.3%yield) as white solid.
Step 9. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) - [1, 2, 3] triazolo [1, 5-a] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 23-14 (40.0 mg, 60.1 μmol, 1.00 eq) in toluene (1.00 mL) was added DPPA (24.8 mg, 90.2 μmol, 19.5 μL, 1.50 eq) , TEA (18.2 mg, 180 μmol, 25.1 μL, 3.00 eq) , the mixture was stirred at 20 ℃ for 12 hrs, then heated to 35 ℃ for 6 hrs. LC-MS showed the desired mass detected. The mixture was concentrated to remove solvent. The residue was purified by Prep-TLC (SiO
2, Plate 1, DCM: MeOH = 10: 1, R
f = 0.65) . The residue was purified by Prep-HPLC (column: Waters Xbridge 150 *25 mm *5 um; mobile phase: [water (NH
4HCO
3) -ACN] ; B%: 32%-62%, 9 min) to get the desired product compound 23 (2.10 mg, 3.10 μmol, 5.15%yield, 93.8%purity) as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 10.90 (s, 1H) , 8.76 (d, J = 1.2 Hz, 1H) , 8.71 (s, 1H) , 8.27 (s, 1H) , 8.01 -7.97 (m, 1H) , 7.81 -7.79 (m, 2H) , 7.53 -7.49 (m, 1H) , 7.48 -7.45 (m, 2H) , 7.41 -7.38 (m, 1H) , 6.73 (s, 1H) , 5.02 -4.95 (m, 1H) , 4.88 -4.84 (m, 1H) , 4.12 (d, J = 11.2 Hz, 1H) , 3.70 (s, 2H) , 3.17 (t, J =13.6 Hz, 1H) , 2.88 -2.77 (m, 2H) , 2.68 -2.62 (m, 1H) , 2.07 -1.99 (m, 2H) , 1.70 -1.65 (m, 2H) , 1.51 (d, J = 6.8 Hz, 6H) , 1.16 (brs, 6H) .
LC-MS (M+H)
+: 636.5
HPLC: 93.8%purity (220 nm)
Example 9
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 24)
Step 1. 2-hydrazineyl-4-iodonicotinonitrile
To a solution of compound 24-1 (25.0 g, 94.5 mmol, 1.00 eq) in MeOH (100 mL) was added N
2H
4
. H
2O (48.1 g, 817 mmol, 46.7 mL, 85.0%purity, 8.65 eq) . The mixture was stirred at 20 ℃ for 0.5 hr. LC-MS showed desired mass detected. The reaction mixture was filtered. The cake was washed with MeOH (100 mL) , then concentrated to give a residue. Compound 24-2 and compound 24-2A (mixture, 15.0 g, crude) was obtained as a yellow solid.
Step 2. 4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 24-2 and compound 24-2A (mixture, 15.0 g, crude) in DCM (100 mL) and anisole (10.0 mL) was added TFA (15.0 g, 131 mmol, 9.74 mL, 3.17 eq) . The mixture was stirred at 25 ℃ for 0.5 hr. LC-MS showed desired mass detected. The reaction mixture was concentrated to give a residue. The residue was adjusted pH to 8 by NH
3·H
2O, then filtered. The cake was concentrated under reduced pressure to give a residue.
The residue was purified by prep-HPLC (FA condition; column: Phenomenex luna C18 (250 *70 mm, 10 um) ; mobile phase: [water (FA) -ACN] ; B%: 0%-30%, 21 min) . Compound 24-3 (4.80 g, 18.4 mmol, 44.4%yield) was obtained as a yellow solid. The structure was confirmed by H NMR. Compound 24-3A (7.00 g, 41.5 mmol, 100%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR of Compound 24-3: (400 MHz, DMSO-d6) δ 12.39 (brs, 1H) , 7.92 (d, J = 4.8 Hz, 1H) , 7.43 (d, J = 4.8 Hz, 1H) , 5.16 (s, 2H)
H NMR of Compound 24-3A: (400 MHz, DMSO-d6) δ 12.31 (brs, 1H) , 7.91 (d, J = 6.0 Hz, 1H) , 7.22 (d, J = 6.0 Hz, 1H) , 5.52 (brs, 2H) .
Step 3. 2- (4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-yl) isoindoline-1, 3-dione
A mixture of compound 24-3 (2.00 g, 7.69 mmol, 1.00 eq) and compound 24-4 (1.71 g, 11.5 mmol, 1.50 eq) in HOAc (20.0 mL) was stirred at 120 ℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered. The cake was washed with H
2O 40.0 mL, then concentrated to give a crude product. Compound 24-5 (1.90 g, 4.87 mmol, 63.3%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 14.46 (s, 1H) , 8.25 (d, J = 4.8 Hz, 1H) , 8.13 -8.11 (m, 2H) , 8.02 -7.99 (m, 2H) , 7.79 (d, J = 4.8 Hz, 1H) .
Step 4. 3- (1, 3-dioxoisoindolin-2-yl) -4-iodo-1H-pyrazolo [3, 4-b] pyridine 7-oxide
To a solution of compound 24-5 (3.30 g, 8.46 mmol, 1.00 eq) in HOAc (30.0 mL) was added m-CPBA (6.87 g, 33.8 mmol, 85.0%purity, 4 eq) at 0 ℃. The mixture was stirred at 85 ℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was concentrated to give a residue. The residue was adjusted pH to 9 by sat. aq NaHCO
3 and extracted with DCM 200 mL (100 mL *2) . The combined organic layers were washed with sat. aq NaHCO
3 200 mL (100 mL *2) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, Petroleum ether: EtOAc = 100: 1 to 0: 1) . (Plate 1: DCM: MeOH = 10: 1) . Compound 24-6 (2.00 g, 4.92 mmol, 58.2%yield) was obtained as a yellow solid.
Step 5. 2- (6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-yl) isoindoline-1, 3-dione
To a solution of compound 24-6 (2.00 g, 3.67 mmol, 74.6%purity, 1.00 eq) in ACN (10.0 mL) was added POCl
3 (3.30 g, 21.5 mmol, 2.00 mL, 5.86 eq) at 0 ℃. The mixture was stirred at 25 ℃ for 1 hr. LC-MS showed desired mass detected. The reaction mixture was filtered, then concentrated to give a crude product. Compound 24-7 (1.00 g, 2.36 mmol, 64.1%yield) was obtained as a white solid.
Step 6. 6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 24-7 (1.00 g, 2.36 mmol, 1.00 eq) in MeOH (10.0 mL) was added NH
2NH
2
. H
2O (4.86 g, 82.5 mmol, 4.72 mL, 85.0%purity, 35.0 eq) at 15 ℃. The mixture was stirred at 15 ℃ for 1 hr. LC-MS showed desired mass detected. The reaction mixture was filtered. The filtrate was concentrated to give a residue. Then diluted with H
2O 50.0 mL and extracted with DCM 200 mL (100 mL *2) . The combined organic layers were washed with brine 200 mL, dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 24-8 (0.270 g, 916 μmol, 38.9%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 7.51 (s, 1H) , 5.27 (s, 2H) .
Step 7. 6-chloro-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 24-8 (120 mg, 407 μmol, 1.00 eq) and compound 24-9 (71.4 mg, 427 μmol, 1.05 eq) in dioxane (2.00 mL) and H
2O (1.00 mL) was added Pd (PPh
3)
4 (47.0 mg, 40.7 μmol, 0.100 eq) and K
2CO
3 (168 mg, 1.22 mmol, 3.00 eq) . The mixture was stirred at 90 ℃ for 2 hrs. LC-MS showed desired mass detected. The reaction mixture was diluted with H
2O 10.0 mL and extracted with EtOAc 40.0 mL (20.0 mL *2) . The combined organic layers were washed with brine 60.0 mL (20.0 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, Petroleum ether: EtOAc = 1: 2) . (Plate 1: Petroleum ether: EtOAc = 1: 2) . Compound 24-10 (60.0 mg, 207 μmol, 50.8%yield) was obtained as a yellow solid.
Step 8. 1- (4- (3-amino-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 24-10 (60.0 mg, 207 μmol, 1.00 eq) and compound 24-11 (86.7 mg, 310 μmol, 1.50 eq) in dioxane (2.00 mL) and H
2O (1.00 mL) was added Xphos Pd G4 (17.8 mg, 20.7 μmol, 0.100 eq) and K
3PO
4 (87.9 mg, 414 μmol, 2.00 eq) . The mixture was stirred at 90 ℃ for 3 hrs. LC-MS showed desired mass detected. The reaction mixture was diluted with H
2O 30.0 mL and extracted with EtOAc 100 mL (50.0 mL *2) . The combined organic layers were washed with brine 100 mL (50.0 mL *2) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . (Plate 1: DCM: MeOH = 10: 1) . Compound 24-12 (60.0 mg, 147 μmol, 71.2%yield) was obtained as a yellow solid.
Step 9. 1- (4- (3-amino-4- (4-aminophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 24-12 (60.0 mg, 147 μmol, 1.00 eq) in THF (6.00 mL) was added Pd/C (30.0 mg, 10.0%purity) under N
2. The suspension was degassed under vacuum and purged with H
2 several times. The mixture was stirred under H
2 (15 psi) at 15 ℃ for 2 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered and the cake was washed with 100 mL DCM, then concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . (Plate 1: DCM: MeOH = 10: 1) . Compound 24-13 (40.0 mg, 105 μmol, 71.5%yield) was obtained as a white solid.
Step 10. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 24-13 (30.0 mg, 79.2 μmol, 1.00 eq) and compound 24-14 (21.8 mg, 79.2 μmol, 1.00 eq) in Py (2.00 mL) was added EDCI (30.3 mg, 158 μmol, 2.00 eq) . The mixture was stirred at 15 ℃ for 1 hr. LC-MS showed desired mass detected. The reaction mixture was added 30.0 mL H
2O and extracted with EtOAc 100 mL (50.0 mL *2) . The combined organic layers were washed with sat. aq NaHCO
3 60.0 mL, dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . (Plate 1: DCM: MeOH = 10: 1) . The crude product was purified by prep-HPLC (FA condition; column: Phenomenex C18 75 *30 mm *3 um;mobile phase: [water (FA) -ACN] ; B%: 32%-62%, 7 mins) . Compound 24 (5.37 mg, 8.08 μmol, 10.1%yield, and 95.6%purity) was obtained as confirmed by H NMR, LC-MS, and HPLC.
H NMR (400 MHz, CDCl
3) : δ 10.92 (s, 1H) , 8.77 -8.72 (m, 2H) , 8.02 -7.98 (m, 1H) , 7.83 (d, J = 8.4 Hz, 2H) , 7.57 -7.50 (m, 4H) , 7.40 (d, J = 7.6 Hz, 1H) , 6.84 (s, 1H) , 5.03 -4.96 (m, 1H) , 4.85 -4.82 (m, 1H) , 4.15 -4.08 (m, 1H) , 4.03 -3.95 (m, 2H) , 3.21 -3.02 (m, 2H) , 2.89 -2.66 (m, 2H) , 2.11 -2.01 (m, 2H) , 1.92 -1.80 (m, 2H) , 1.51 (d, J = 6.8 Hz, 6H) , 1.18 -1.14 (m, 6H) .
LC-MS (M+H)
+: 636.5
HPLC: Purity: 95.6% (220 nm)
Example 10
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 25)
Step 1. tert-butyl 4- (4, 4-dicyano-3, 3-bis (methylthio) butanoyl) piperidine-1-carboxylate
To a solution of compound 25-1 (10.0 g, 58.7 mmol, 1.00 eq) and compound 25-2 (26.7 g, 117 mmol, 2.00 eq) in DMSO (100 mL) was added KOH (9.89 g, 176 mmol, 3.00 eq) . The mixture was stirred at 25 ℃ for 8 hrs. LC-MS showed desired mass detected. The reaction mixture was poured into 100 mL ice water, and acidified with 1M HCl to pH to 6 and extracted with EtOAc 400 mL (100 mL *3) . The combined organic layers were washed with brine 600 mL (200 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, Petroleum ether: EtOAc = 100: 1 to 0: 1) . (Plate 1: Petroleum ether: EtOAc = 1: 1) . Compound 25-3 (5.88 g, 14.7 mmol, 25.1%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 7.52 -7.29 (m, 2H) , 5.76 -5.74 (m, 1H) , 4.05 -3.97 (m, 3H) , 3.30 (s, 3H) , 2.70 -2.67 (m, 2H) , 2.34 -2.19 (m, 7H) , 1.64 -1.50 (m, 2H) , 1.39 (s, 9H) .
Step 2. tert-butyl 4- (5-cyano-4- (methylthio) -6-oxo-1, 6-dihydropyridin-2-yl) piperidine-1-carboxylate
To a solution of compound 25-3 (5.88 g, 14.7 mmol, 1.00 eq) in DMSO (50.0 mL) was added KOH (2.49 g, 44.3 mmol, 3.00 eq) . The mixture was stirred at 25 ℃for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was poured into 100 mL ice water, and acidified with 1M HCl to pH to 6 and extracted with EtOAc 150 mL (75.0 mL *2) . The combined organic layers were washed with brine 300 mL (60.0 mL *5) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (FA condition; column: Phenomenex luna C18 (250 *70 mm, 10 um) ; mobile phase: [water (FA) -ACN] ; B%: 35%-65%, 20 mins) . Compound 25-4 (1.00 g, 2.86 mmol, 19.3%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 6.21 (s, 1H) , 4.14 -4.06 (m, 2H) , 2.72 -2.61 (m, 6H) , 1.78 -1.75 (m, 2H) , 1.65 -1.59 (m, 2H) , 1.38 (s, 9H) .
Step 3. 4- (methylthio) -2-oxo-6- (piperidin-4-yl) -1, 2-dihydropyridine-3-carbonitrile
To a solution of compound 25-4 (1.00 g, 2.86 mmol, 1.00 eq) in DCM (1.00 mL) was added HCl/dioxane (4 M, 25.0 mL, 34.9 eq) . The mixture was stirred at 15 ℃ for 0.5 hr. LC-MS showed desired mass detected. The reaction mixture was concentrated to give a residue. Compound 25-5 (0.700 g, 2.45 mmol, 85.5%yield, HCl) was obtained as a yellow solid.
Step 4. 6- (1-isobutyrylpiperidin-4-yl) -4- (methylthio) -2-oxo-1, 2-dihydropyridine-3-carbonitrile
To a solution of compound 25-5 (0.700 g, 2.45 mmol, 1.00 eq, HCl) and TEA (743 mg, 7.35 mmol, 1.02 mL, 3.00 eq) in THF (10.0 mL) was added compound 25-6 (260 mg, 2.45 mmol, 255 μL, 1.00 eq) . The mixture was stirred at 15 ℃ for 0.5 hr. LiOH
. H
2O (1.00 g) in 2.00 mL H
2O was added to the reaction mixture and stirred at 15 ℃ for 0.5 hr. LC-MS (showed desired mass detected. The reaction mixture was added 10.0 mL H
2O and extracted with DCM 40.0 mL (20.0 mL *2) . The combined organic layers were washed with sat. aq NaHCO
3 40.0 mL , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . (Plate 1: DCM: MeOH = 10: 1) . Compound 25-7 (550 mg, 1.72 mmol, 70.3%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 12.21 (s, 1H) , 6.22 (s, 1H) , 4.58 -4.55 (m, 1H) , 4.09 -4.05 (m, 1H) , 3.04 -2.67 (m, 4H) , 2.61 (s, 3H) , 1.82 -1.68 (m, 4H) , 1.03 -0.98 (m, 6H) .
Step 5. 3-amino-6- (1-isobutyrylpiperidin-4-yl) -1, 5-dihydro-4H-pyrazolo [4, 3-c] pyridin-4-one
Compound 25-7 (550 mg, 1.72 mmol, 1.00 eq) , and N
2H
4
. H
2O (2.69 g, 52.6 mmol, 2.61 mL, 98.0%purity, 30.5 eq) were taken up into a microwave tube in i-PrOH (4.00 mL) . The sealed tube was heated at 120 ℃ for 60 mins under microwave. TLC indicated compound 25-7 was consumed completely and one new spot formed. The reaction was clean according to TLC. (Plate 1: DCM: MeOH =10: 1) . The reaction mixture was concentrated to give a residue. Compound 25-8 (400 mg, 1.32 mmol, 76.5%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 5.95 (s, 1H) , 5.19 (s, 2H) , 4.53 (d, J =11.6 Hz, 1H) , 4.04 (d, J = 13.2 Hz, 1H) , 3.05 -3.02 (m, 1H) , 2.99 -2.84 (m, 1H) , 2.67 -2.61 (m, 2H) , 1.89 -1.81 (m, 2H) , 1.55 -1.38 (m, 2H) , 1.02 -0.97 (m, 6H) .
Step 6. 1- (4- (3-amino-4-bromo-1H-pyrazolo [4, 3-c] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
POBr
3 (2.84 g, 9.89 mmol, 1.01 mL, 10.0 eq) was melted at 60 ℃. Compound 25-8 (300 mg, 988 μmol, 1.00 eq) was added to the reaction mixture and stirred at 75 ℃ for 1 hr. LC-MS showed desired mass detected. The reaction mixture was poured into 100 mL ice sat. aq NaHCO
3, and then extracted with EtOAc 200 mL (50.0 mL *4) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 7: 1) . (Plate 1: DCM: MeOH = 7: 1) . Compound 25-9 (80.0 mg, 218 μmol, 22.0%yield) was obtained as a white solid.
Step 7. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
Compound 25-9 (30.0 mg, 81.9 μmol, 1.00 eq) , compound 25-10 (117 mg, 245 μmol, 3.00 eq) and DIEA (31.7 mg, 245 μmol, 42.8 μL, 3.00 eq) Pd (t-Bu
3P)
2 (4.19 mg, 8.19 μmol, 0.100 eq) were taken up into a microwave tube in H
2O (0.150 mL) , dioxane (1.50 mL) . The sealed tube was heated at 130 ℃ for 60 mins under microwave. LC-MS showed desired mass detected. The reaction mixture was concentrated to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . (Plate 1: DCM: MeOH = 10: 1) . Compound 25 was obtained as confirmed by H NMR, LC-MS, and HPLC.
H NMR (400 MHz, CDCl
3) δ 10.92 (s, 1H) , 8.74 (d, J = 4.0 Hz, 1H) , 8.70 (s, 1H) , 8.01 -7.97 (m, 1H) , 7.81 (d, J = 8.4 Hz, 2H) , 7.21 (d, J = 8.4 Hz, 2H) , 7.53 -7.40 (m, 3H) , 7.04 (s, 1H) , 5.01 -4.98 (m, 1H) , 4.80 -4.77 (m, 1H) , 4.21 -4.09 (m, 3H) , 3.24 -3.17 (m, 1H) , 2.93 -2.82 (m, 1H) , 2.23 -2.09 (m, 2H) , 1.72 -1.65 (m, 2H) , 1.54 -1.45 (m, 8H) , 1.14 (t, J = 6.8 Hz, 6H) .
Example 11
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) benzo [d] isoxazol-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 27)
Step 1. 4'-amino-5-bromo-3-fluoro- [1, 1'-biphenyl] -2-carbonitrile
To a solution of compound 27-1 (1.00 g, 3.07 mmol, 1.00 eq) and compound 27-2 (470 mg, 2.15 mmol, 0.700 eq) in THF (12.0 mL) was added Na
2CO
3 (975 mg, 9.21 mmol, 3.00 eq) in H
2O (3.00 mL) and Pd (dppf) Cl
2 (449 mg, 613 μmol, 0.200 eq) . The mixture was degassed and purged with N
2 for 3 times, then stirred at 60 ℃for 3 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue (PE: EtOAc = 3: 1, R
f (P1) = 0.500) was purified by column chromatography (SiO
2, PE: EtOAc = 100: 0 to 100: 30) . Then the residue was triturated with EtOAc: MeOH = 10: 1 (100 mL) at 25 ℃ for 30 min. The mixture was filtered and concentrated under reduced pressure to give a residue. Compound 27-3 (330 mg, 742 μmol, 24.2%yield) was obtained as a brown solid, confirmed by LC-MS.
LC-MS: (M+H)
+: 291.0
Step 2. 4'-amino-3-fluoro-5- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) - [1, 1'-biphenyl] -2-carbonitrile
To a solution of compound 27-3 (320 mg, 720 μmol, 65.5%purity, 1.00 eq) and compound 27-4 (301 mg, 1.08 mmol, 1.50 eq) in THF (12.0 mL) was added K
2CO
3 (298 mg, 2.16 mmol, 3.00 eq) in H
2O (3.00 mL) and Pd (PPh
3)
4 (166 mg, 144 μmol, 0.200 eq) . The mixture was stirred at 75 ℃ for 12 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.600) . Crude 27-5 (550 mg) was obtained as a brown solid.
Step 3. 4'-amino-3-fluoro-5- (1-isobutyrylpiperidin-4-yl) - [1, 1'-biphenyl] -2-carbonitrile
To a solution of compound 27-5 (550 mg, 1.51 mmol, 1.00 eq) in THF (80.0 mL) was added Pd/C (8.00 g, 10.0%purity) , degassed and purged with H
2 (15 Psi) for 3 times, then stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The mixture was filtered and filtrate was concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (EtOAc: MeOH = 10: 1, R
f (P1) =0.800) and further purified by prep-HPLC (neutral condition; column: Welch Ultimate XB-SiOH 250 *70.0 *10.0 um; mobile phase: [Hexane-EtOH] ; B%: 15.0%-55.0%, 15 min) . Compound 27-6 (120 mg, 322 μmol, 21.2%yield) was obtained as a yellow solid, confirmed by H NMR , F NMR and LC-MS.
H NMR: (400 MHz, CDCl
3) δ 7.40 -7.38 (m, 2H) , 7.10 (s, 1H) , 6.97 -6.95 (m, 1H) , 6.81 -6.79 (m, 2H) , 4.86 (d, J = 14.8 Hz, 1H) , 4.10 (d, J = 12.8 Hz, 1H) , 3.19 -3.12 (m, 1H) , 2.88 -2.81 (m, 2H) , 2.66 -2.60 (m, 1H) , 1.98 -1.92 (m, 2H) , 1.67 -1.61 (m, 2H) , 1.20 -1.11 (m, 6H) .
LC-MS: (M+H)
+: 366.3
Step 4. 4'-amino-5- (1-isobutyrylpiperidin-4-yl) -3- ( (propan-2-ylideneamino) oxy) - [1, 1'-biphenyl] -2-carbonitrile
To a solution of compound 27-7 (23.5 mg, 322 μmol, 26.1 μL, 2.00 eq) in DMF (2.00 mL) was added t-BuOK (36.1 mg, 322 μmol, 2.00 eq) . The mixture was stirred at 20 ℃ for 1 hr. Then compound 27-6 (60.0 mg, 161 μmol, 98.1%purity, 1.00 eq) was added to the mixture. And the mixture was stirred at 20 ℃ for 6 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (10.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Crude 27-8 (80.0 mg) was obtained as a brown solid.
Step 5. 1- (4- (3-amino-4- (4-aminophenyl) benzo [d] isoxazol-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 27-8 (80.0 mg, 191 μmol, 1.00 eq) in MeOH (4.00 mL) and DCM (2.00 mL) was added HCl (6.00 M, 4.00 mL, 125 eq) . Then the mixture was stirred at 50 ℃ for 10 hrs. LC-MS showed the desired mass was detected. The reaction mixture was concentrated to give a residue. The residue was adjusted pH to 7 by sat. NaHCO
3. Then the mixture was extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.600) . Compound 27-9 (40.0 mg, 104 μmol, 54.9%yield) was obtained as an off-white solid, confirmed by LC-MS.
LC-MS: (M+H)
+: 379.4
Step 6. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) benzo [d] isoxazol-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 27)
To a solution of compound 27-9 (30.0 mg, 78.7 μmol, 99.3%purity, 1.00 eq) and compound 27-10 (21.6 mg, 78.7 μmol, 1.00 eq) in pyridine (3.00 mL) was added EDCI (60.3 mg, 314 μmol, 4.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (10.0 mL) , and then extracted with DCM (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.500) . Compound 27 (34.5 mg, 53.0 μmol, 67.2%yield, 97.6%purity) was obtained as confirmed by H NMR, 2D NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 10.88 (s, 1H) , 8.72 (s, 1H) , 8.64 -8.63 (m, 1H) , 8.08 -8.05 (m, 1H) , 7.83 -7.81 (m, 2H) , 7.58 -7.55 (m, 2H) , 7.51 -7.49 (m, 2H) , 7.37 (s, 1H) , 7.07 (s, 1H) , 5.19 -5.17 (m, 2H) , 4.79 -4.75 (m, 1H) , 4.59 (d, J =11.2 Hz, 1H) , 4.07 (d, J = 13.6 Hz, 1H) , 3.15 -3.09 (m, 1H) , 2.99 -2.86 (m, 2H) , 2.61 -2.55 (m, 1H) , 1.92 -1.84 (m, 2H) , 1.69 -1.51 (m, 2H) , 1.45 -1.43 (m, 6H) , 1.03 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 636.4
HPLC purity: 97.6% (220 nm)
Example 12
N- (4- (3-amino-1-ethyl-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 30)
Step 1. 2- (6-bromo-1-ethyl-4-iodo-1H-indazol-3-yl) isoindoline-1, 3-dione
To a solution of compound 30-1 (500 mg, 974 μmol, 91.2%purity, 1.00 eq) in DMF (5.00 mL) was added Cs
2CO
3 (317 mg, 974 μmol, 1.00 eq) and EtI (197 mg, 1.27 mmol, 101 μL, 1.30 eq) at 0 ℃. Then the mixture was stirred at 20 ℃ for 0.5 hr. Then EtI (30.4 mg, 195 μmol, 15.6 μL, 0.200 eq) was added to the mixture. And the mixture was stirred at 20 ℃ for 0.5 hr. LC-MS showed desired mass was detected. The mixture was poured into water (10.0 mL) and extracted with DCM: MeOH = 10: 1 (10.0 mL *3) . And the combined organic layers were washed with brine (10.0 mL * 3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 30-2 (513 mg, crude) was obtained as a white solid.
LC-MS: (M+H)
+: 497.9
Step 2. 6-bromo-1-ethyl-4-iodo-1H-indazol-3-amine
To a solution of compound 30-2 (513 mg, 1.03 mmol, 1.00 eq) in MeOH (5.00 mL) and DCM (5.00 mL) was added N
2H
4
. H
2O (920 mg, 18.0 mmol, 893 μL, 98.0%purity, 17.4 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed desired mass was detected. TLC (Petroleum ether: EtOAc = 1: 1, R
f (P1) = 0.20) indicated the starting material was consumed completely. The mixture was washed by water (10.0 mL) , the water was extracted with DCM: MeOH = 10: 1 (5.00 mL *3) . The combined orgaic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue (Petroleum ether: EtOAc = 1: 1, R
f (P1) = 0.20) was purified by column chromatography (SiO
2, PE: EtOAc = 100: 20 to 100: 40) . Compound 30-3 (276 mg, 720 μmol, 69.6%yield, 95.5%purity) was obtained as a white solid, confirmed by H NMR, 2D NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 7.79 (s, 1H) , 7.45 (s, 1H) , 5.21 (s, 2H) , 4.16 -4.10 (m, 2H) , 1.25 (t, J = 7.2 Hz, 3H) .
LC-MS: (M+H)
+: 367.9
Step 3. 4- (4-aminophenyl) -6-bromo-1-ethyl-1H-indazol-3-amine
A mixture of compound 30-3 (0.250 g, 683 μmol, 1.00 eq) , compound 30-4 (149 mg, 683 μmol, 1.00 eq) , Pd (PPh
3)
4 (78.9 mg, 68.3 μmol, 0.100 eq) , Na
2CO
3 (361 mg, 3.42 mmol, 5.00 eq) , EtOH (2.00 mL) and H
2O (2.00 mL) in toluene (2.00 mL) was degassed and purged with N
2 for 3 times, and then the mixture was stirred at 90 ℃ for 3 hrs under N
2 atmosphere. LC-MS showed ~ 31.1%of desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . Compound 30-5 (175 mg, 528 μmol, 77.35%yield) was obtained as a yellow solid.
LC-MS: (M+H)
+: 331.0
Step 4. 1- (4- (3-amino-4- (4-aminophenyl) -1-ethyl-1H-indazol-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
A mixture of compound 30-5 (163 mg, 492 μmol, 1.00 eq) , compound 30-6 (206 mg, 738 μmol, 1.50 eq) , Pd (PPh
3)
4 (56.8 mg, 49.2 μmol, 0.100 eq) , K
2CO
3 (204 mg, 1.48 mmol, 3.00 eq) and H
2O (0.750 mL) in dioxane (3.00 mL) was degassed and purged with N
2 for 3 times, and then the mixture was stirred at 90 ℃ for 4 hrs under N
2 atmosphere. LC-MS showed ~ 51.5%of desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . Compound 30-7 (166 mg, 408 μmol, 82.92%yield, 99.2%purity) was obtained as a yellow solid and confirmed by LC-MS.
LC-MS: (M+H)
+: 404.2
Step 5. 1- (4- (3-amino-4- (4-aminophenyl) -1-ethyl-1H-indazol-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 30-7 (156 mg, 386 μmol, 1.00 eq) in MeOH (3.00 mL) was added Pd/C (10%, 150 mg) under N
2 atmosphere. The suspension was degassed and purged with H
2 for 3 times. The mixture was stirred under H
2 (15 Psi) at 25 ℃ for 2 hrs. LC-MS showed compound 30-7 was consumed completely and one main peak with desired mass was detected. The reaction mixture was filtered and concentrated under reduced pressure to give a residue. Compound 30-8 (140 mg, crude) was obtained as a yellow solid.
LC-MS: (M+H)
+: 406.2
Step 6. N- (4- (3-amino-1-ethyl-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 30)
A mixture of compound 30-8 (70.0 mg, 172 μmol, 1.00 eq) , compound 30-9 (52.2 mg, 189 μmol, 1.10 eq) , EDCI (99.2 mg, 517 μmol, 3.00 eq) in Py (2.00 mL) was degassed and purged with N
2 for 3 times, and then the mixture was stirred at 25 ℃ for 2 hrs under N
2 atmosphere. LC-MS showed ~ 54.9%of desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (neutral condition; column: Waters Xbridge 150 *25 mm *5 um; mobile phase: [water (NH
4HCO
3) -ACN] ; B%: 42%-72%, 8 min) . Compound 30 (46.5 mg, 67.6 μmol, 39.21%yield, 96.3%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 10.8 (s, 1H) , 8.77 -8.66 (m, 2H) , 7.96 (td, J
1 = 8.0 Hz, J
2 = 2.0 Hz, 1H) , 7.74 (d, J = 8.0 Hz, 2H) , 7.51 -7.43 (m, 3H) , 7.38 (d, J =8.0 Hz, 1H) , 6.98 (s, 1H) , 6.73 (s, 1H) , 5.02 -4.91 (m, 1H) , 4.84 (d, J = 12.0 Hz, 1H) , 4.19 (q, J = 8.0 Hz, 2H) , 4.08 (d, J = 12.0 Hz, 1H) , 3.79 (s, 2H) , 3.15 (t, J = 12.0 Hz, 1H) , 2.95 -2.76 (m, 2H) , 2.63 (t, J = 12.0 Hz, 1H) , 2.07 -1.91 (m, 2H) , 1.80 -1.59 (m, 2H) , 1.48 (d, J = 8.0 Hz, 6H) , 1.41 (d, J = 8.0 Hz, 3H) , 1.14 (q, J = 8.0 Hz, 6H) .
LC-MS: (M+H)
+: 663.4
HPLC Purity: 96.3% (220 nm) .
Example 13
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1- (4-fluorophenyl) -4, 5-dimethyl-2-oxo-1, 2-dihydropyridine-3-carboxamide (Compound 35)
Step 1. 5-bromo-4-methyl-2-oxo-1, 2-dihydropyridine-3-carbonitrile
To a solution of compound 35-1 (6.00 g, 44.7 mmol, 1.00 eq) in DMF (50.0 mL) was added NBS (8.76 g, 49.2 mmol, 1.10 eq) at 0 ℃ under N
2. The mixture was stirred at 40 ℃ for 2 hrs. LC-MS showed desired mass detected. The reaction mixture was poured into 100 mL ice water and there's solid precipitation. Then filtered and the cake was washed with PE 100 mL, concentrated to give a crude product. Compound 35-2 (6.00 g, 28.1 mmol, 62.9%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 12.75 (s, 1H) , 8.06 (s, 1H) , 2.42 (s, 3H) .
Step 2. 5-bromo-4-methyl-2-oxo-1, 2-dihydropyridine-3-carboxylic acid
A mixture of compound 35-2 (2.00 g, 9.39 mmol, 1.00 eq) in 20.0 mL H
2SO
4 (50.0%purity) and stirred at 120 ℃ for 4 hrs. LC-MS showed desired mass detected. The reaction mixture was added 20.0 mL H
2O and filtered. The cake was concentrated under reduced pressure to give a residue. Compound 35-3 (0.800 g, 3.45 mmol, 36.7%yield) was obtained as a yellow solid.
Step 3. methyl 5-bromo-4-methyl-2-oxo-1, 2-dihydropyridine-3-carboxylate
A mixture of compound 35-3 (0.800 g, 3.45 mmol, 1.00 eq) and H
2SO
4 (1.84 g, 18.7 mmol, 1.00 mL, 5.44 eq) in MeOH (10.0 mL) was stirred at 80 ℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was diluted with H
2O 20.0 mL, and added sat. aq Na
2CO
3 to adjusted pH to 8. The mixture was extracted with DCM 100 mL (50.0 mL *2) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 35-4 (0.650 g, 2.64 mmol, 76.6%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 12.19 (s, 1H) , 7.82 (s, 1H) , 3.78 (s, 3H) , 2.14 (s, 3H) .
Step 4. methyl 5-bromo-1- (4-fluorophenyl) -4-methyl-2-oxo-1, 2-dihydropyridine-3-carboxylate
To a solution of compound 35-4 (0.650 g, 2.64 mmol, 1.00 eq) and compound 35-5 (997 mg, 7.13 mmol, 2.70 eq) in DCM (10.0 mL) was added Cu (OAc)
2 (959 mg, 5.28 mmol, 2.00 eq) and Py (835 mg, 10.5 mmol, 852 μL, 4.00 eq) . The mixture was stirred at 25 ℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered and the filtrate was concentrated to give a crude product. The residue was purified by column chromatography (SiO
2, Petroleum ether: EtOAc = 100: 1 to 1: 1) . (Petroleum ether: EtOAc = 2: 1) . Compound 35-6 (0.800 g, 2.35 mmol, 89.0%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 7.56 (s, 1H) , 7.37 -7.34 (m, 2H) , 7.19 -7.15 (m, 2H) , 3.93 (s, 3H) , 2.33 (s, 3H) .
Step 5. methyl 1- (4-fluorophenyl) -4, 5-dimethyl-2-oxo-1, 2-dihydropyridine-3-carboxylate
To a solution of compound 35-6 (0.100 g, 293 μmol, 1.00 eq) and compound 35-7 (175 mg, 2.94 mmol, 10.0 eq) in H
2O (0.500 mL) and dioxane (1.50 mL) was added K
2CO
3 (121 mg, 881 μmol, 3.00 eq) and Pd (dppf) Cl
2
. CH
2Cl
2 (24.0 mg, 29.4 μmol, 0.100 eq) . The mixture was stirred at 120 ℃ for 1 hr. TLC indicated compound 35-6 was consumed completely and many new spots formed. The reaction was messy according to TLC. (Petroleum ether: EtOAc = 1: 1) . The reaction mixture was diluted with H
2O 10.0 mL and extracted with EtOAc 40.0 mL (20.0 mL *2) . The combined organic layers were washed with brine 60.0 mL (20.0 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, Petroleum ether: Ethyl acetate = 1: 1) . Compound 35-8 (85.0 mg, 213 μmol, 72.4%yield, 69%purity) was obtained as a white solid. The structure was confirmed by LC-MS.
Step 6. 1- (4-fluorophenyl) -4, 5-dimethyl-2-oxo-1, 2-dihydropyridine-3-carboxylic acid
To a solution of compound 35-8 (85.0 mg, 213 μmol, 69%purity, 1.00 eq) in EtOH (4.00 mL) was added NaOH (2.00 M, 3.00 mL, 28.1 eq) . The mixture was stirred at 90 ℃ for 2 hrs. LC-MS showed desired mass detected. The reaction mixture was diluted with H
2O 10.0 mL, and added 1 M HCl to adjusted pH to 2. The mixture was extracted with EtOAc 100 mL (50.0 mL *2) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (FA condition; column: Phenomenex C18 75.0 *30.0 mm *3.00 um; mobile phase: [water (FA) -ACN] ; B%: 22.0%-52.0%, 7 min) . 35-9 (50.0 mg, 191 μmol, 89.8%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 15.22 (s, 1H) , 7.39 -7.36 (m, 3H) , 7.26 -7.22 (m, 2H) , 2.83 (s, 3H) , 2.21 (s, 3H) .
Step 7. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1- (4-fluorophenyl) -4, 5-dimethyl-2-oxo-1, 2-dihydropyridine-3-carboxamide
To a solution of compound 35-10 (50.0 mg, 122 μmol, 92.7%purity, 1.00 eq) and compound 35-9 (28.8 mg, 110 μmol, 0.900 eq) in pyridine (3.00 mL) was added EDCI (94.1 mg, 491 μmol, 4.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (5.00 mL) , and then extracted with DCM: MeOH = 10: 1 (10.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (HCl condition; column: 3_Phenomenex Luna C18 75 *30.0 mm *3.00 um; mobile phase: [water (HCl) -ACN] ; B%: 26.0%-46.0%, 8 min) . Compound 35 (8.00 mg, 12.7 μmol, 10.3%yield, 98.8%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 11.60 (s, 1H) , 10.54 (s, 1H) , 7.82 -7.81 (m, 2H) , 7.59 (s, 1H) , 7.49 -7.45 (m, 4H) , 7.43 -7.37 (m, 2H) , 7.06 (s, 1H) , 6.71 (s, 1H) , 4.59 (d, J = 14.4 Hz, 1H) , 4.27 (d, J = 10.0 Hz, 2H) , 4.08 (d, J = 14.8 Hz, 1H) , 3.17 -3.08 (m, 1H) , 2.94 -2.86 (m, 3H) , 2.20 (s, 3H) , 2.08 (s, 3H) , 1.93 -1.85 (m, 2H) , 1.62 -1.47 (m, 2H) , 1.04 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 621.4
HPLC: purity: 98.8% (220 nm)
Example 14
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide (Compound 36)
Step 1. 5- (4-fluorophenyl) -4-hydroxynicotinic acid
To a solution of compound 36-1 (1.00 g, 4.59 mmol, 1.00 eq) in dioxane (10.0 mL) and H
2O (2.00 mL) was added Pd (PPh
3)
4 (530 mg, 458 μmol, 0.100 eq) and Na
2CO
3 (972 mg, 9.17 mmol, 2.00 eq) and compound 36-2 (963 mg, 6.88 mmol, 1.50 eq) at 20 ℃. The reaction mixture was stirred at 90 ℃ for 12 hrs. LC-MS showed compound 36-1 was consumed completely. Several new peaks were shown on LC-MS and desired m/z (MS=234.0 RT=0.688) was detected. The reaction mixture was quenched by 1.00 M HCl until pH is around 2, then extracted with EtOAc 300 mL (100 mL *3) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (FA condition, column: Phenomenex luna C18 150 *25.0 mm *10.0 um; mobile phase: [water (FA) -ACN] ; B%:12.0%-42.0%, 10 min) . Compound 36-3 (0.150 g, 643 μmol, 14.0%yield, 100%purity) was obtained as confirmed by LC-MS and H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 8.61 (s, 1H) , 8.25 (s, 1H) , 7.74 -7.71 (m, 2H) , 7.30 -7.26 (m, 2H) .
LC-MS: (M+H)
+: 234.2
Step 2. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide
To a solution of compound 36-4 (80.0 mg, 188 μmol, 88.9%purity, 1.00 eq) , compound 36-3 (43.9 mg, 188 μmol, 100%purity, 1.00 eq) and HATU (107 mg, 282 μmol, 1.50 eq) in DMF (5.00 mL) was added DIEA (73.1 mg, 565 μmol, 98.5 μL, 3.00 eq) . The mixture was stirred at 20 ℃ for 3 hrs. LC-MS showed desired mass was detected. The reaction mixture was quenched by water (10.0 mL) , and then extracted with EtOAc (10.0 mL *3) . The combined organic layers were washed with water (5.00 *3mL) , dried over anhydrous Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.200) and was further purified by prep-HPLC (HCl condition, column: 3_Phenomenex Luna C18 75.0 *30.0 mm *3.00 um; mobile phase: [water (HCl) -ACN] ; B%: 28.0%-48.0%, 8 min) . Compound 36 (20.0 mg, 33.2 μmol, 17.6%yield, 98.4%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, DMSO-d
6) δ 13.15 (s, 1H) , 11.61 (s, 1H) , 8.63 (s, 1H) , 8.09 (s, 1H) , 7.84 -7.82 (m, 2H) , 7.74 -7.70 (m, 2H) , 7.48 -7.45 (m, 2H) , 7.29 -7.27 (m, 2H) , 7.07 (s, 1H) , 6.73 (s, 1H) , 4.58 (d, J = 11.6 Hz, 1H) , 4.30 (s, 2H) , 4.07 (d, J = 12.8 Hz, 1H) , 3.16 -3.13 (m, 1H) , 2.92 -2.87 (m, 2H) , 2.57 -2.50 (m, 1H) , 1.89 -1.85 (m, 2H) , 1.62 -1.47 (m, 2H) , 1.04 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 593.3
HPLC: purity: 98.9% (220 nm)
Example 15
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxy-6-methylnicotinamide (Compound 37)
Step 1. 5-bromo-6-methyl-4-oxo-1, 4-dihydropyridine-3-carboxylic acid
To a solution of compound 37-1 (5.00 g, 32.6 mmol, 1.00 eq) in AcOH (50.0 mL) and H
2O (10.0 mL) was added Br
2 (6.26 g, 39.1 mmol, 2.02 mL, 1.20 eq) dropwise at 20 ℃. The reaction mixture was stirred at 60 ℃ for 5 hrs. LC-MS showed the starting material was consumed completely. The reaction mixture was concentrated under reduced pressure to remove AcOH, then diluted with MeOH (30.0 mL) , and then filtered and filter cake was washed with MeOH (10.0 mL) . The filter cake was concentrated under reduced pressure to give a residue. Compound 37-2 (5.12 g, 22.0 mmol, 67.5%yield) was obtained as white solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 15.77 (s, 1H) , 13.43 (s, 1H) , 8.55 (s, 1H) , 2.53 (s, 3H) .
Step 2. 5- (4-fluorophenyl) -4-hydroxy-6-methylnicotinic acid
To a solution of compound 37-2 (2.00 g, 8.62 mmol, 1.00 eq) in dioxane (20.0 mL) and H
2O (4.00 mL) was added Na
2CO
3 (1.83 g, 17.2 mmol, 2.00 eq) and Pd (PPh
3)
4 (996 mg, 861 μmol, 0.100 eq) and compound 37-3 (2.41 g, 17.2 mmol, 2.00 eq) at 20 ℃. The reaction mixture was stirred at 90 ℃ for 12 hrs. LC-MS showed ~5%of the starting material was remained. Several new peaks were shown on LC-MS and desired m/z (MS=248.1 RT=0.700) was detected. The reaction mixture was quenched by 1 M HCl until pH was around 2, then filtered and the filter cake was dissolved in MeOH (10.0 mL) and DCM (90.0 mL) , then dried over anhydrous Na
2SO
4, and then filtered and concentrated under reduced pressure to give a residue. Compound 37-4 (0.700 g, 2.69 mmol, 31.2%yield, 95.0%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 13.11 (s, 1H) , 8.57 (s, 1H) , 7.35 -7.25 (m, 4H) , 2.22 (s, 3H) .
LC-MS: (M+H)
+: 248.1
Step 3. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxy-6-methylnicotinamide
To a solution of compound 37-5 (78.0 mg, 200 μmol, 97.0%purity, 1.00 eq) and compound 37-4 (46.9 mg, 180 μmol, 95.0%purity, 0.900 eq) in pyridine (5.00 mL) was added EDCI (153 mg, 801 μmol, 4.00 eq) . The mixture was stirred at 40 ℃ for 2 hrs. LC-MS showed desired mass was detected. The reaction mixture was quenched by water (5.00 mL) , and then extracted with DCM: MeOH = 10: 1 (10.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.200) and was further purified by prep-HPLC (HCl condition; column: 3_Phenomenex Luna C18 75.0 *30.0 mm *3.00 um; mobile phase: [water (HCl) -ACN] ; B%: 28.0%-48.0%, 8 min) . Compound 37 (18.0 mg, 29.5 μmol, 14.7%yield, 99.5%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 13.16 (s, 1H) , 11.60 (s, 1H) , 8.54 (s, 1H) , 7.80 -7.78 (m, 2H) , 7.45 -7.43 (m, 2H) , 7.33 -7.06 (m, 4H) , 7.06 (s, 1H) , 6.72 (s, 1H) , 4.58 (d, J = 12.0 Hz, 1H) , 4.27 (d, J = 10.0 Hz, 1H) , 4.07 (d, J = 12.0 Hz, 1H) , 3.28 -3.25 (m, 1H) , 3.16 -3.09 (m, 1H) , 2.94 -2.86 (m, 2H) , 2.70 -2.62 (m, 1H) , 2.17 (s, 3H) , 1.89 -1.85 (m, 2H) , 1.64 -1.47 (m, 2H) , 1.03 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 607.4
HPLC: purity: 99.5% (220 nm)
Example 16
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxy-2, 6-dimethylnicotinamide (Compound 38)
Step 1. ethyl 4-hydroxy-2, 6-dimethylnicotinate
A mixture of compound 38-1 (19.8 g, 139 mmol, 18.3 mL, 1.80 eq) and compound 38-2 (10.0 g, 77.4 mmol, 1.00 eq) was stirred at 130℃ for 5 hrs. TLC indicated compound 38-2 was consumed completely and many new spots formed. The reaction was messy according to TLC (Petroleum ether: Ethyl acetate = 3: 1) . The reaction mixture was filtered and concentrated under reduced pressure to give a residue. The crude product was triturated with MTBE (50.0 mL) at 25 ℃ for 20 mins. Compound 38-3 (4.80 g, 24.5 mmol, 31.7%yield, 100%purity) was obtained as a white solid. The structure was confirmed by LC-MS and H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 11.29 (s, 1H) , 5.89 (s, 1H) , 4.20 -4.14 (m, 2H) , 2.16 (s, 6H) , 1.22 (t, J = 6.80 Hz, 3H) .
LC-MS: (M-H)
-: 194.1
Step 2. ethyl 5-bromo-4-hydroxy-2, 6-dimethylnicotinate
To a solution of compound 38-3 (2.00 g, 10.2 mmol, 100%purity, 1.00 eq) in CCl
4 (20.0 mL) was added NBS (3.65 g, 20.4 mmol, 2.00 eq) . The mixture was stirred at 70℃ for 5 hrs. LC-MS showed desired mass was detected. The reaction mixture was filtered and the cake was washed DCM (100 mL) . The filtrate was concentrated to give a residue. The residue was purified by column chromatography (SiO
2, Petroleum ether: Ethyl acetate = 100: 1 to 0: 1) . (DCM: MeOH = 10: 1) . Compound 38-4 (2.50 g, 9.12 mmol, 89.0%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 11.80 (s, 1H) , 4.22 -4.20 (m, 2H) , 2.39 (s, 3H) , 2.20 (s, 3H) , 1.24 (t, J = 7.20 Hz, 3H) .
Step 3. 5- (4-fluorophenyl) -4-hydroxy-2, 6-dimethylnicotinic acid
To a solution of compound 38-4 (1.00 g, 3.65 mmol, 1.00 eq) and compound 38-5 (612 mg, 4.38 mmol, 1.20 eq) in dioxane (10.0 mL) and H
2O (2.00 mL) was added Pd (PPh
3)
4 (421 mg, 364 μmol, 0.100 eq) and K
2CO
3 (1.01 g, 7.30 mmol, 2.00 eq) . The mixture was stirred at 100℃ for 12 hrs. TLC indicated the starting material was consumed completely and many new spots formed. The reaction was messy according to TLC (DCM : MeOH = 10: 1) . The reaction mixture was diluted with H
2O (80.0 mL) and extracted with EtOAc (100 mL *3) . The combined organic layers were washed with brine (200 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was triturated with MeOH: MTBE = 1: 10 (20.0 mL) at 15℃ for 60 min. Compound 38-6 (0.550 g, 2.02 mmol, 55.4%yield, 96.1%purity) was obtained as a gray solid. The structure was confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 12.73 (s, 1H) , 7.32 -7.26 (m, 4H) , 2.79 (s, 3H) , 2.21 (s, 3H) .
LC-MS: (M+H)
+: 261.9
Step 4. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxy-2, 6-dimethylnicotinamide
To a solution of compound 38-7 (60.0 mg, 138 μmol, 87.3%purity, 1.00 eq) , compound 38-6 (37.7 mg, 138 μmol, 96.1%purity, 1.00 eq) and HATU (79.2 mg, 208 μmol, 1.50 eq) in DMF (3.00 mL) was added DIEA (53.8 mg, 416 μmol, 72.5 μL, 3.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by addition water (30.0 mL) , and then extracted with EtOAc (30.0 mL *5) . The combined organic layers were washed with water (60.0 mL *5) and brine (60.0 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (plate1, DCM: MeOH = 8: 1, R
f (P1) = 0.40) and was further purified by prep-HPLC (column: 3_Phenomenex Luna C18 75 *30 mm *3 um; mobile phase: [water (HCl) -ACN] ; B%: 28%-48%, 8 min) . Compound 38 (15.0 mg, 23.3 μmol, 16.8%yield, 96.5%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 14.23 (s, 1H) , 11.59 (s, 1H) , 7.77 -7.75 (m, 2H) , 7.39 -7.37 (m, 2H) , 7.26 -7.04 (m, 4H) , 6.87 (s, 1H) , 6.70 (s, 1H) , 4.58 (d, J = 11.6 Hz, 1H) , 4.30 (s, 2H) , 4.06 (d, J = 11.6 Hz, 1H) , 3.16 -3.09 (m, 2H) , 2.95 -2.85 (m, 2H) , 2.71 (s, 3H) , 2.06 (s, 3H) , 1.92 -1.85 (m, 2H) , 1.64 -1.45 (m, 2H) , 1.07 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 621.4
HPLC: purity: 98.0% (220 nm)
Example 17
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1-ethyl-4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxamide (Compound 39)
Step 1. ethyl (Z) -4-chloro-2- (2- (4-methoxyphenyl) hydrazineylidene) -3-oxobutanoate
To a solution of HCl (3.00 M, 45.0 mL, 3.33 eq) was added compound 39-2 (5.00 g, 40.6 mmol, 1.00 eq) slowly at 10 ℃. Then the mixture was cooled to 0 ℃, and a solution of NaNO
2 (2.94 g, 42.6 mmol, 1.05 eq) in H
2O (10.0 mL) was added, the mixture turned to a yellow solution (solution A) . To a mixture of compound 39-1 (7.35 g, 44.6 mmol, 1.10 eq) and NaOAc (16.6 g, 203 mmol, 5.00 eq) in EtOH (10.0 mL) and H
2O (10.0 mL) was added solution A at 0 -5 ℃. Then the mixture was stirred at 15 ℃ for 1 hr. TLC indicated compound 39-2 was consumed completely and one new spot formed. The reaction was clean according to TLC. (Petroleum ether: Ethyl acetate = 1: 1, R
f (P1) = 0.300) . The mixture was filtrated, and the filter cake was washed with water (200 mL) and dried over high vacuum to afford the product as a yellow solid. Compound 39-3 (10.0 g, 33.4 mmol, 82.4%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 12.34 (s, 1H) , 7.52 -7.50 (m, 2H) , 7.00 -6.98 (m, 2H) , 4.93 (s, 2H) , 4.33 -4.28 (m, 2H) , 3.76 (s, 3H) , 1.30 (t, J = 2.80 Hz, 3H) .
Step 2. ethyl 4-hydroxy-1- (4-methoxyphenyl) -1H-pyrazole-3-carboxylate
To a solution of compound 39-3 (5.00 g, 16.7 mmol, 1.00 eq) in EtOH (50.0 mL) was added KOAc (3.29 g, 33.4 mmol, 2.00 eq) . The mixture was stirred at 78℃ for 12 hrs. LC-MS showed desired mass was detected. The reaction mixture was concentrated under reduced pressure to remove EtOH. The residue was diluted with H
2O (100 mL) and extracted with EtOAc (100 mL *2) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 39-4 (4.00 g, 15.2 mmol, 91.1%yield) was obtained as a yellow solid.
Step 3. ethyl 1- (4-methoxyphenyl) -4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxylate
To a solution of compound 39-4 (4.00 g, 15.2 mmol, 1.00 eq) in DMF (20.0 mL) was added Cs
2CO
3 (9.94 g, 30.5 mmol, 2.00 eq) and compound 39-5 (4.25 g, 18.3 mmol, 1.20 eq) . The mixture was stirred at 20℃ for 10 hrs. LC-MS showed the starting material was consumed and the desired mass was found. The mixture was duilted with water (40.0 mL) , extracted with METB (20.0 mL*3) . The combined organic layers were washed with brine (25.0 mL) and dried over Na
2SO
4, filtered and concentrated in vacuo. Compound 39-6 (4.90 g, 14.2 mmol, 93.3%yield) was obtained as a brown solid, which was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 8.56 (s, 1H) , 7.74 -7.72 (m, 2H) , 7.11 -7.09 (m, 2H) , 4.77 -4.70 (m, 2H) , 4.34 -4.27 (m, 2H) , 3.81 (s, 3H) , 1.30 (t, J = 7.20 Hz, 3H) .
Step 4. ethyl 4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxylate
To a solution of compound 39-6 (4.90 g, 14.2 mmol, 1.00 eq) in IPA (30.0 mL) was added a solution of CAN (27.3 g, 49.8 mmol, 24.8 mL, 3.50 eq) in H
2O (30.0 mL) at 0℃. The mixture was stirred at 20℃ for 10 hrs. LC-MS showed the desired mass was found. The reaction mixture was extracted with EtOAc (30.0 mL*2) . The combined organic layers was washed with saturated aqueous NaHCO
3 (30.0 mL *2) , brine (50.0 mL) , dried over Na
2SO
4, filtered and the filtrate was concentrated in vacuo. The crude product was purified by reversed-phase HPLC (0.100%HCl condition) . Compound 39-7 (1.30 g, 5.46 mmol, 38.3%yield) was obtained as a yellow solid.
Step 5. ethyl 1-ethyl-4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxylate
To a solution of compound 39-7 (1.30 g, 5.46 mmol, 1.00 eq) in dioxane (20.0 mL) was added Cs
2CO
3 (3.56 g, 10.9 mmol, 2.00 eq) and compound 39-8 (1.28 g, 8.19 mmol, 654 μL, 1.50 eq) . The mixture was stirred at 20℃ for 10 hrs. LC-MS showed the starting material was consumed and the desired mass was found. The mixture was filtered and concentrated under reduced pressure to give a residue. Compound 39-9 (1.55 g, crude) was obtained as a yellow solid.
Step 6. 1-ethyl-4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxylic acid
To a solution of compound 39-9 (700 mg, 2.63 mmol, 1.00 eq) in MeOH (6.00 mL) was added NaOH (210 mg, 5.26 mmol, 2.00 eq) in H
2O (6.00 mL) at 0℃. The mixture was stirred at 20 ℃ for 12 hrs. LC-MS showed the desired mass was detected. TLC (PE: EtOAc = 1: 1, R
f (R1) = 0.300) indicated the starting material was consumed completely. The mixture was adjusted to pH = 3 with HCl (1M) at 0 ℃, and extracted with DCM (50.0 mL *3) . The combined organic layers were dried over Na
2SO
4, and the solvent was evaporated under reduced pressure. Compound 39-10 (550 mg, 2.31 mmol, 87.8%yield) was obtained as a white solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 12.57 (s, 1H) , 7.83 (s, 1H) , 4.64 -4.57 (m, 2H) , 4.12 -4.07 (m, 2H) , 1.36 (t, J = 7.20 Hz, 3H) .
Step 7. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1-ethyl-4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxamide
To a solution of compound 39-11 (50.0 mg, 122 μmol, 92.7%purity, 1.00 eq) and compound 39-10 (26.3 mg, 110 μmol, 0.900 eq) in pyridine (3.00 mL) was added EDCI (94.1 mg, 491 μmol, 4.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed there was desired mass detected. The reaction mixture was diluted with DCM (60.0 mL) and washed with water (20.0 mL *3) . The organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: 3_Phenomenex Luna C18 75.0 *30.0 mm *3.00 um; mobile phase: [water (HCl) -ACN] ; B%: 28.0%-48.0%, 8 min) . Compound 39 (15.0 mg, 24.9 μmol, 20.2%yield, 99.3%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 11.61 (s, 1H) , 9.97 (s, 1H) , 7.93 -7.90 (m, 3H) , 7.45 -7.43 (m, 2H) , 7.07 (s, 1H) , 6.72 (s, 1H) , 4.75 -4.68 (m, 2H) , 4.59 (d, J =13.6 Hz, 1H) , 4.30 (s, 2H) , 4.21 -4.15 (m, 2H) , 4.07 (d, J = 13.2 Hz, 1H) , 3.16 -3.10 (m, 1H) , 2.94 -2.87 (m, 2H) , 2.63 -2.60 (m, 1H) , 1.93 -1.85 (m, 2H) , 1.62 -1.50 (m, 2H) , 1.45 -1.41 (m, 3H) , 1.04 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 598.4
HPLC: purity: 99.3% (220 nm)
Example 18
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1- (4-fluorophenyl) -4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxamide (Compound 40)
Step 1. ethyl (Z) -4-chloro-2- (2- (4-fluorophenyl) hydrazineylidene) -3-oxobutanoate
To HCl (3.00 M, 45.0 mL, 3.00 eq) was added compound 40-2 (5.00 g, 45.0 mmol, 4.31 mL, 1.00 eq) at 0 ℃, then to the reaction mixture was added NaNO
2 (3.26 g, 47.2 mmol, 1.05 eq) in H
2O (10.0 mL) at 0 ℃. The reaction mixture was stirred at 0 ℃ for 1 hr. After first monitoring, to compound 40-1 (8.15 g, 49.5 mmol, 1.10 eq) and NaOAc (18.4 g, 224 mmol, 5.00 eq) in EtOH (50.0 mL) and H
2O (50.0 mL) was added the previous reaction mixture dropwise at 0 ℃. The reaction mixture was stirred at 20 ℃ for 5 hrs. LC-MS showed compound 40-2 was consumed completely. One main peak was shown on LC-MS with desired m/z (MS=287, RT=0.891) . The reaction mixture was filtered and the filter cake was washed by H
2O (50.0 mL *2) , then concentrated under reduced pressure to give a residue. Compound 40-3 (12.0 g, crude) was obtained as a red solid.
Step 2. ethyl 1- (4-fluorophenyl) -4-hydroxy-1H-pyrazole-3-carboxylate
To a solution of compound 40-3 (12.0 g, 41.8 mmol, 1.00 eq) in EtOH (100 mL) was added KOAc (8.22 g, 83.7 mmol, 2.00 eq) at 20 ℃. The reaction mixture was stirred at 80 ℃ for 2 hrs. LC-MS showed compound 40-3 was consumed completely. One main peak was shown on LC-MS with desired m/z (MS=251, RT=0.788) . The reaction mixture was concentrated under reduced pressure to remove EtOH, then diluted with H
2O (100 mL) , and then extracted with EtOAc (100 mL *3) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. Compound 40-4 (10.4 g, crude) was obtained as a red solid.
Step 3. ethyl 1- (4-fluorophenyl) -4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxylate
To a solution of compound 40-4 (2.00 g, 7.99 mmol, 1.00 eq) in DMF (20.0 mL) was added NaH (639 mg, 15.9 mmol, 60.0%purity, 2.00 eq) at 20 ℃. The reaction mixture was stirred at 20 ℃ for 30 min. To the reaction mixture was added compound 40-5 (3.71 g, 15.9 mmol, 2.00 eq) at 20 ℃. The reaction mixture was stirred at 60 ℃ for 1 hr. LC-MS showed compound 40-4 was consumed completely. One main peak was shown on LC-MS with desired m/z (MS=333, RT=0.895) . The reaction mixture was diluted with H
2O (60.0 mL) , then extracted with EtOAc (60 mL *3) . The combined organic layers were washed by H
2O (60.0 mL) and brine (60.0 mL) , then dried over anhydrous Na
2SO
4, and then filtered and concentrated under reduced pressure to give a residue. Compound 40-6 (4.00 g, crude) was obtained as a brown solid.
Step 4. 1- (4-fluorophenyl) -4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxylic acid
To a solution of compound 40-6 (3.50 g, 10.5 mmol, 1.00 eq) in MeOH (20.0 mL) was added NaOH (842 mg, 21.0 mmol, 2.00 eq) in H
2O (20.0 mL) at 20 ℃. The reaction mixture was stirred at 20 ℃ for 12 hrs. LC-MS showed compound 40-6 was consumed completely. One main peak was shown on LC-MS with desired m/z (MS=305 RT=0.810) . HPLC showed corresponding peaks to guide the purification. The reaction mixture was quenched by 1 M HCl until pH is around 2, then concentrated under reduced pressure to remove MeOH. The aqueous phase was extracted with EtOAc (100 mL *3) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (FA condition, column: Phenomenex luna C18 (250 *70 mm, 10 um) ; mobile phase: [water (FA) -ACN] ; B%: 30%-60%, 21 min) . Compound 40-7 (1.50 g, 4.93 mmol, 46.8%yield, 100%purity) was obtained as a white solid, confirmed by H NMR and LC-MS.
HPLC: purity: 87.6% (220 nm)
H NMR: (400 MHz, DMSO-d
6) δ 13.00 (s, 1H) , 8.61 (s, 1H) , 7.87 -7.83 (m, 2H) , 7.43 -7.38 (m, 2H) , 4.76 -4.70 (m, 2H) .
LC-MS: (M+H)
+: 305.0
Step 5. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -1- (4-fluorophenyl) -4- (2, 2, 2-trifluoroethoxy) -1H-pyrazole-3-carboxamide
To a solution of compound 40-8 (50.0 mg, 128 μmol, 97.0%purity, 1.00 eq) in DMF (3.00 mL) was added compound 40-7 (37.1 mg, 122 μmol, 100%purity, 0.950 eq) , HATU (73.2 mg, 192 μmol, 1.50 eq) and DIEA (49.8 mg, 385 μmol, 67.1 μL, 3.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by addition water (30.0 mL) , and then extracted with EtOAc (30.0 mL *5) . The combined organic layers were washed with water (60.0 mL *5) and brine (60.0 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.40) and further purified by prep-HPLC (column: 3_Phenomenex Luna C18 75 *30 mm *3 um; mobile phase: [water (HCl) -ACN] ; B%: 36%-56%, 8 min) . Compound 40 (11.0 mg, 15.7 μmol, 12.2%yield, 94.8%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, MeOD) δ 8.34 (s, 1H) , 7.93 -7.85 (m, 4H) , 7.52 -7.49 (m, 2H) , 7.29 -7.25 (m, 2H) , 7.16 (s, 1H) , 6.81 (s, 1H) , 4.74 -4.68 (m, 3H) , 4.20 (d, J = 12.8 Hz, 1H) , 3.27 -3.24 (m, 1H) , 3.02 -2.96 (m, 2H) , 2.73 -2.72 (m, 1H) , 2.04 -1.96 (m, 2H) , 1.69 -1.64 (m, 2H) , 1.15 -1.10 (m, 6H) .
LC-MS: (M+H)
+: 664.4
HPLC: purity: 94.8% (220 nm)
Example 19
2- ( (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) carbamoyl) -6- (4-fluorophenyl) pyridine 1-oxide (Compound 42)
Step 1. 6- (4-fluorophenyl) picolinic acid
To a solution of compound 42-1 (1.00 g, 4.95 mmol, 1.20 eq) and compound 42-2 (577 mg, 4.13 mmol, 1.00 eq) in EtOH (10.0 mL) and toluene (10.0 mL) was added Cs
2CO
3 (2.69 g, 8.25 mmol, 2.00 eq) and Pd (PPh
3)
4 (95.3 mg, 82.5 μmol, 0.0200 eq) at 20 ℃. The reaction mixture was stirred at 90 ℃ for 12 hrs. LC-MS showed compound 42-2 was consumed completely. The reaction mixture was quenched by 1.00 M HCl until pH is around 3, then filtered and concentrated under reduced pressure to remove EtOH and toluene. The residue was filtered and filter cake was concentrated under reduced pressure to give a residue. Compound 42-3 (1.04 g, crude) was obtained as a red solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 13.23 (m, 1H) , 8.27 -8.25 (m, 2H) , 8.24 -8.23 (m, 1H) , 8.06 -8.05 (m, 1H) , 8.00 -7.98 (m, 1H) , 7.37 -7.32 (m, 2H) .
Step 2. methyl 6- (4-fluorophenyl) picolinate
To a solution of compound 42-3 (850 mg, 3.91 mmol, 1.00 eq) in MeOH (10.0 mL) was added SOCl
2 (931 mg, 7.83 mmol, 567 μL, 2.00 eq) at 20 ℃. The reaction mixture was stirred at 60 ℃ for 3 hrs. LC-MS showed the starting material was consumed completely. The reaction mixture was quenched by sat. aq. NaHCO
3 until pH is around 8, then extracted with EtOAc 30.0 mL (10.0 mL *3) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. Compound 42-4 (1.00 g, crude) was obtained as light yellow oil.
Step 3. 2- (4-fluorophenyl) -6- (methoxycarbonyl) pyridine 1-oxide
To a solution of compound 42-4 (300 mg, 1.30 mmol, 1.00 eq) in DCM (10.0 mL) was added m-CPBA (1.12 g, 5.19 mmol, 80.0%purity, 4.00 eq) at 0℃. The mixture was heated to 40℃ for 12 hrs. LC-MS showed the ~30.0%of desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (20.0 mL) and water (20.0 mL) , extracted with DCM (30.0 mL *3) , the combined organic layer was washed with brine (50.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (PE: EtOAc = 1: 1, R
f (P1) = 0.1) . Compound 42-5 (80.0 mg, 323 μmol, 24.9%yield, 100%purity) was obtained as a white solid.
LC-MS: (M+H)
+: 248.1
Step 4. 2-carboxy-6- (4-fluorophenyl) pyridine 1-oxide
To a solution of compound 42-5 (160 mg, 647 μmol, 1.00 eq) in MeOH (3.00 mL) was added NaOH (1.00 M, 1.50 mL, 2.32 eq) at 0℃, the mixture was stirred at 20 ℃ for 3 hrs. LC-MS showed the desired mass detected. The residue was concentrated to remove solvent, then dissolved in water (10.0 mL) , adjusted the pH =3 by 1.00M HCl at 0℃, extracted with DCM (10.0 mL *3) , the combined organic layer was washed with brine (20.0 mL) , dried over Na
2SO
4, filtered and concentrated to get a residue. 42-6 (130 mg, 557 μmol, 86.1%yield) was obtained as a light yellow solid.
H NMR: (400 MHz, CDCl
3) δ 8.35 -8.33 (m, 1H) , 8.04 -8.03 (m, 1H) , 7.95 -7.90 (m, 1H) , 7.89 -7.87 (m, 2H) , 7.43 -7.39 (m, 2H) .
Step 5. 2- ( (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) carbamoyl) -6- (4-fluorophenyl) pyridine 1-oxide
To a solution of compound 42-7 (50.0 mg, 122 μmol, 92.7%purity, 1.00 eq) , 42-6 (25.7 mg, 110 μmol, 0.900 eq) and HATU (70.0 mg, 184 μmol, 1.50 eq) in DMF (4.00 mL) was added DIEA (47.6 mg, 368 μmol, 64.1 μL, 3.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by addition water (30.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed with water (10.0 mL *5) and brine (10.0 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) and further purified by prep-HPLC (FA condition; column: Phenomenex Synergi C18 150.0 *25.0 mm *10.0 um; mobile phase: [water (FA) -ACN] ; B%: 41.0%-71.0%, 10 min) . Compound 42 (23.0 mg, 38.2 μmol, 31.1%yield, 98.5%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, DMSO-d
6) δ 13.51 (s, 1H) , 11.68 (s, 1H) , 8.35 -8.33 (m, 1H) , 7.91 -7.87 (m, 5H) , 7.76 -7.71 (m, 1H) , 7.52 -7.50 (m, 2H) , 7.41 -7.36 (m, 2H) , 7.09 (s, 1H) , 6.74 (s, 1H) , 4.58 (d, J = 13.6 Hz, 1H) , 4.29 (s, 2H) , 4.07 (d, J =13.2 Hz, 1H) , 3.17 -3.10 (m, 1H) , 2.94 -2.86 (m, 2H) , 2.83 -2.60 (m, 1H) , 1.93 -1.85 (m, 2H) , 1.62 -1.45 (m, 2H) , 1.07 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 593.3
HPLC: purity: 98.5% (220 nm)
Example 20
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridazine-3-carboxamide (Compound 43)
Step 1. 2- (4-fluorophenyl) acetyl chloride
To a solution of compound 43-1 (10.0 g, 64.8 mmol, 1.00 eq) in DCM (100 mL) was added SOCl
2 (9.26 g, 77.8 mmol, 5.65 mL, 1.20 eq) . The mixture was stirred at 20℃ for 10 hrs. TLC (PE: EtOAc = 3: 1) showed the starting material was consumed and there was a mainly new spot formed. The mixture was concentrated in vacuo. Crude 43-2 (11.0 g, crude) was obtained as yellow oil.
Step 2. ethyl 2-diazo-4- (4-fluorophenyl) -3-oxobutanoate
To a solution of compound 43-2 (11.0 g, 63.7 mmol, 1.00 eq) in EtOAc (100 mL) was added compound 43-3 (14.5 g, 127 mmol, 13.3 mL, 2.00 eq) at 0℃. The mixture was stirred at 20℃ for 10 hrs. LC-MS showed the desired mass was found. The mixture was diluted with sat. K
2CO
3 (10.0 mL) , and stirred for 20 min. The mixture was separated and the water phase was extracted with EtOAc (10.0 mL *3) . The combined organic layer was washed with brine (10.0 mL *2) , dried over Na
2SO
4, filtered and concentrated in vacuo. The residue was purified by column chromatography (SiO
2, PE: EtOAc = 100: 0 to 100: 1) (PE: EtOAc = 5: 1, R
f (P1) =0.400) . Compound 43-4 (4.70 g, 18.7 mmol, 29.4%yield) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 7.31 -7.27 (m, 2H) , 7.05 -7.01 (m, 2H) , 4.38 -4.32 (m, 2H) , 4.16 (s, 2H) , 1.39 -1.35 (m, 3H) .
Step 3. ethyl (E) -4- (4-fluorophenyl) -2-hydrazineylidene-3-oxobutanoate
To a solution of compound 43-4 (3.00 g, 11.9 mmol, 1.00 eq) in MTBE (15.0 mL) was added n-Bu
3P (2.91 g, 14.3 mmol, 3.55 mL, 1.20 eq) at 0℃. The mixture was stirred at 20℃ for 10 hrs. LC-MS showed the desired mass was found. H NMR showed there was desired product. EtOAc (10.0 mL) and water (20.0 mL) were added, and the layers were separated. The organic phase was washed with saturated brine (20.0 mL) , dried over Na
2SO
4, filtered and concentrated in vacuo. Compound 43-5 (3.00 g, 11.8 mmol, 99.2%yield) was obtained as yellow oil.
H NMR: (400 MHz, DMSO-d
6) δ 7.23 -7.19 (m, 2H) , 7.11 -7.07 (m, 2H) , 4.09 -4.04 (m, 2H) , 3.92 (s, 2H) , 3.32 (s, 2H) , 1.17 -1.15 (m, 3H) .
Step 4. tert-butyl (E) -2- (1-ethoxy-4- (4-fluorophenyl) -1, 3-dioxobutan-2-ylidene) hydrazine-1-carboxylate
To a solution of compound 43-5 (1.00 g, 3.96 mmol, 1.00 eq) in THF (10.0 mL) was added DMAP (145 mg, 1.19 mmol, 0.300 eq) , TEA (882 mg, 8.72 mmol, 1.21 mL, 2.20 eq) and Boc
2O (1.73 g, 7.93 mmol, 1.82 mL, 2.00 eq) . The mixture was stirred at 20℃ for 4 hrs. LC-MS showed the starting material was consumed completely and the desired mass was found. The mixture was diluted with EtOAc (15.0 mL) and water (10.0 mL) , and then separated. The organic layer was washed with brine (10.0 mL) , dried over Na
2SO
4, filtered and concentrated in vacuo. Compound 43-6 (1.10 g, 3.12 mmol, 78.7%yield) was obtained as yellow oil.
Step 5. ethyl 5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridazine-3-carboxylate
To a solution of compound 43-6 (1.00 g, 2.84 mmol, 1.00 eq) in toluene (10.0 mL) was added DMF-DMA (675 mg, 5.66 mmol, 752 μL, 2.00 eq) . The mixture was stirred at 60℃ for 10 hrs. LC-MS showed the starting material was consumed completely. The mixture was concentrated in vacuo. The residue was purified by column chromatography (SiO
2, PE: EtOAc = 100: 0 to 100: 30) (PE: EtOAc = 1: 1, R
f (P1) = 0.400) . Compound 43-7 (0.500 g, 1.81 mmol, 63.7%yield) was obtained as a yellow solid, which was confirmed by 2D NMR.
Step 6. 5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridazine-3-carboxylic acid
To a solution of compound 43-7 (100 mg, 361 μmol, 1.00 eq) in MeOH (1.00 mL) was added NaOH (28.9 mg, 723 μmol, 2.00 eq) in H
2O (1.00 mL) at 0 ℃. The mixture was stirred at 20 ℃ for 6 hrs. TLC (DCM: MeOH = 10: 1, R
f (R1) = 0.800) showed the starting material was consumed completely. The mixture was adjusted PH = 3 with HCl (1M) at 0 ℃, and extracted with DCM (50.0 mL *3) . The combined organic layers were dried over Na
2SO
4, and the solvent was evaporated under reduced pressure. The residue was purified by prep-HPLC (FA condition; column: Unisil 3-100 C18 Ultra 150 *50.0 mm *3.00 um; mobile phase: [water (FA) -ACN] ; B%: 12.0%-42.0%, 7 min) . Compound 43-8 (50.0 mg, 201 μmol, 55.6%yield, 100%purity) was obtainbed as a white solid, confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 9.05 (s, 1H) , 7.95 -7.91 (m, 2H) , 7.38 -7.34 (m, 2H) , 4.14 (s, 3H) .
LC-MS: (M+H)
+: 249.1
Step 7. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridazine-3-carboxamide
To a solution of compound 43-9 (50.0 mg, 122 μmol, 92.7%purity, 1.00 eq) and 43-8 (27.4 mg, 110 μmol, 100%purity, 0.900 eq) in pyridine (3.00 mL) was added EDCI (94.1 mg, 491 μmol, 4.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by addition water (10.0 mL) , and then extracted with DCM (20.0 mL) . The organic layer was washed with brine (10.0 mL *3) . Then the combined aqueous phases were extracted with DCM (10.0 mL *3) . Then the combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (FA condition; column: Phenomenex Synergi C18 150 *25.0 mm *10.0 um; mobile phase: [water (FA) -ACN] ; B%: 35.0%-65.0%, 8 min) . Compound 43 (20.0 mg, 32.1 μmol, 26.1%yield, 97.7%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 12.41 (s, 1H) , 11.62 (s, 1H) , 8.88 (s, 1H) , 7.96 -7.92 (m, 2H) , 7.86 -7.83 (m, 2H) , 7.51 -7.49 (m, 2H) , 7.37 -7.32 (m, 2H) , 7.08 (s, 1H) , 6.74 (s, 1H) , 4.59 (d, J = 13.6 Hz, 1H) , 4.30 -4.27 (m, 2H) , 4.12 (s, 3H) , 4.08 (d, J = 14.8 Hz, 1H) , 3.16 -3.13 (m, 1H) , 2.94 -2.88 (m, 2H) , 2.63 -2.57 (m, 1H) , 1.94 -1.86 (m, 2H) , 1.63 -1.48 (m, 2H) , 1.04 -1.00 (m, 6H) .
LC-MS: (M+H)
+: 608.4
HPLC: purity: 97.7% (220 nm)
Example 21
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide (Compound 44)
To a solution of compound 44-1 (30.0 mg, 75.1 μmol, 98.0%purity, 1.00 eq) , compound 44-2 (17.5 mg, 75.1 μmol, 100%purity, 1.00 eq) and HATU (42.8 mg, 112 μmol, 1.50 eq) in DMF (3.00 mL) was added DIEA (29.1 mg, 225 μmol, 39.2 μL, 3.00 eq) . The mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (50.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 44 (20.0 mg, 32.6 μmol, 43.4%yield, 99.0%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 13.09 (s, 1H) , 12.64 (s, 1H) , 8.63 (d, J =1.2 Hz, 1H) , 8.09 (d, J = 1.6 Hz, 1H) , 7.84 -7.82 (m, 2H) , 7.74 -7.70 (m, 2H) , 7.47 -7.45 (m, 2H) , 7.29 -7.25 (m, 2H) , 7.22 (s, 1H) , 6.74 (s, 1H) , 4.60 (d, J = 11.2 Hz, 1H) , 4.35 (s, 2H) , 4.08 (d, J = 10.4 Hz, 1H) , 3.77 (s, 3H) , 3.17 -3.10 (m, 1H) , 2.94 -2.88 (m, 2H) , 2.63 -2.60 (m, 1H) , 1.93 -1.86 (m, 2H) , 1.67 -1.55 (m, 2H) , 1.05 -1.00 (m, 6H) .
LC-MS: (M+H)
+: 607.4
HPLC: purity: 99.0% (220 nm)
Example 22
N- (4- (4-amino-1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide (Compound 45)
Step 1. 1- (4- (3- (4-aminophenyl) -4- ( (3, 4-dimethylbenzyl) amino) -1H-pyrazolo [4, 3-c] pyridin-1-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 45-1 (50.0 mg, 96.5 μmol, 99.6%purity, 1.00 eq) and compound 45-2 (42.2 mg, 193 μmol, 2.00 eq) in THF (4.00 mL) was added K
2CO
3 (40.0 mg, 289 μmol, 3.00 eq) in H
2O (1.00 mL) and Pd (PPh
3)
4 (11.1 mg, 9.65 μmol, 0.100 eq) . The mixture was stirred at 80℃ for 12 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.300) . Compound 45-3 (68.0 mg, crude) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 7.92 (d, J = 6.0 Hz, 1H) , 7.72 -7.68 (m, 1H) , 7.40 -7.38 (m, 2H) , 7.21 -7.19 (m, 1H) , 6.74 -6.72 (m, 2H) , 6.60 -6.59 (m, 1H) , 6.41 -6.39 (m, 2H) , 4.81 (d, J = 12.4 Hz, 1H) , 4.64 (s, 2H) , 4.55 -4.47 (m, 1H) , 4.14 (d, J = 13.6 Hz, 1H) , 3.84 -3.81 (m, 2H) , 3.79 (s, 3H) , 3.61 (s, 3H) , 3.29 -3.22 (m, 1H) , 2.88 -2.77 (m, 2H) , 2.33 -2.21 (m, 2H) , 2.11 -2.01 (m, 2H) , 1.20 -1.12 (m, 6H) .
Step 2. N- (4- (4- ( (3, 4-dimethylbenzyl) amino) -1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide
To a solution of compound 45-3 (60.0 mg, 113 μmol, 1.00 eq) and compound 45-4 (31.7 mg, 136 μmol, 1.20 eq) in DMF (3.00 mL) was added HATU (64.7 mg, 170 μmol, 1.50 eq) and DIEA (44.0 mg, 340 μmol, 59.3 μL, 3.00 eq) . Then the mixture was stirred at 20℃ for 6hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (50.0 mL) , and then extracted with EtOAc (10.0 mL *3) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 45-5 (100 mg, crude) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 13.15 (s, 1H) , 8.64 (d, J = 1.6 Hz, 1H) , 8.10 (d, J = 1.6 Hz, 1H) , 7.95 (s, 1H) , 7.87 -7.82 (m, 3H) , 7.74 -7.71 (m, 2H) , 7.64 -7.61 (m, 1H) , 7.57 -7.54 (m, 2H) , 7.30 -7.25 (m, 2H) , 7.12 (d, J = 8.4 Hz, 1H) , 6.94 (d, J = 6.0 Hz, 1H) , 6.48 (d, J = 2.0 Hz, 1H) , 6.42 -6.39 (m, 1H) , 5.61 -5.60 (m, 1H) , 4.82 -4.81 (m, 1H) , 4.59 -4.53 (m, 1H) , 4.50 (d, J = 6.0 Hz, 2H) , 4.13 -4.09 (m, 1H) , 3.69 (s, 3H) , 3.61 (s, 3H) , 2.96 -2.91 (m, 2H) , 2.03 -1.87 (m, 4H) , 1.03 -1.01 (m, 6H) .
Step 3. N- (4- (4-amino-1- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide
To a solution of compound 45-5 (50.0 mg, 67.2 μmol, 1.00 eq) in DCM (2.00 mL) was added TFA (3.08 g, 27.0 mmol, 2.00 mL, 401 eq) at 0℃. The mixture was stirred at 20℃ for 3hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by sat. NaHCO
3 (10.0 mL) , and then extracted with DCM (10.0 mL *5) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (basic condition; column: Waters Xbridge 150 *25.0 mm *5.00 um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 23.0%-53.0%, 9 min) . Compound 45 (16.0 mg, 26.6 μmol, 39.6%yield, 98.9%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, MeOD) δ 8.76 (s, 1H) , 7.99 (s, 1H) , 7.91 -7.89 (m, 2H) , 7.73 (d, J = 6.4 Hz, 1H) , 7.66 -7.61 (m, 4H) , 7.18 -7.14 (m, 2H) , 6.95 (d, J =6.4 Hz, 1H) , 4.84 -4.79 (m, 1H) , 4.72 (d, J = 13.2 Hz, 1H) , 4.26 (d, J = 13.6 Hz, 1H) , 3.41 -3.35 (m, 1H) , 3.06 -3.00 (m, 1H) , 2.94 -2.89 (m, 1H) , 2.27 -2.23 (m, 1H) , 2.14 -2.08 (m, 3H) , 1.17 -1.11 (m, 6H) .
LC-MS: (M+H)
+: 594.3
HPLC: purity: 98.9% (215 nm)
Example 23
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-pyrazolo [4, 3-c] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 46)
Step 1. 1- (4- (3-amino-4-bromo-1-methyl-1H-pyrazolo [4, 3-c] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 46-1 (35.0 mg, 95.5 μmol, 1.00 eq) and K
2CO
3 (26.4 mg, 191 μmol, 2.00 eq) in DMF (2.00 mL) was added CH
3I (13.5 mg, 95.5 μmol, 5.95 μL, 1.00 eq) . The mixture was stirred at 45 ℃ for 2 hrs. LC-MS showed desired mass detected. The reaction mixture was diluted with H
2O 10.0 mL and extracted with EtOAc 40.0 mL (20.0 mL *2) . The combined organic layers were washed with brine 60.0 mL (20.0 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . (Plate 1: DCM: MeOH = 10: 1) . Compound 46-2 (10.0 mg, 26.3 μmol, 27.5%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 7.27 (s, 1H) , 5.52 (s, 2H) , 4.58 -4.54 (m, 1H) , 4.07 -4.04 (m, 1H) , 3.74 (s, 3H) , 3.16 -3.10 (m, 2H) , 2.92 -2.88 (m, 2H) , 1.95 -1.86 (m, 2H) , 1.62 -1.49 (m, 2H) , 1.03 -0.98 (m, 6H) .
Step 2. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-pyrazolo [4, 3-c] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
Compound 46-2 (5.00 mg, 13.5 μmol, 1.00 eq) , compound 46-3 (18.7 mg, 39.4 μmol, 3.00 eq) and DIEA (5.10 mg, 39.4 μmol, 6.87 μL, 3.00 eq) , Pd (t-Bu
3P)
2 (671 ug, 1.31 μmol, 0.100 eq) were taken up into a microwave tube in dioxane (1.50 mL) , H
2O (0.100 mL) . The sealed tube was heated at 130 ℃ for 60 mins under microwave. LC-MS showed desired mass detected. The reaction mixture was concentrated to give a residue. The residue was purified by prep-TLC (SiO
2, DCM: MeOH = 10: 1) . (Plate 1: DCM: MeOH = 10: 1) . The residue was purified by prep-HPLC (basic condition, column: Waters Xbridge 150 *25 mm *5 um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 30%-60%, 9 mins) . Compound 46 (1.71 mg, 2.39 μmol, 18.2%yield, 91.0%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 10.87 (s, 1H) , 8.76 -8.72 (m, 2H) , 8.01 -7.97 (m, 1H) , 7.82 -7.80 (m, 2H) , 7.72 -7.70 (m, 2H) , 7.53 -7.49 (m, 1H) , 7.41 -7.40 (m, 1H) , 6.83 (s, 1H) , 5.03 -4.96 (m, 1H) , 4.87 -4.84 (m, 1H) , 4.08 -4.03 (m, 3H) , 3.84 (s, 3H) , 3.20 -3.08 (m, 2H) , 2.93 -2.80 (m, 1H) , 2.72 -2.67 (m, 1H) , 2.21 -2.09 (m, 2H) , 1.80 -1.74 (m, 2H) , 1.51 (d, J = 6.8 Hz, 6H) , 1.16 (t, J = 6.8 Hz, 7.6H) .
LC-MS: M+H: 650.4
HPLC: 91.0%purity
Example 24
N- (4- (5-amino-1- (1-isobutyrylpiperidin-4-yl) imidazo [1, 5-c] pyrimidin-3-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 47)
Step 1. 2- (bis (4-methoxybenzyl) amino) pyrimidine-4-carbonitrile
To a solution of compound 47-1 (5.00 g, 35.8 mmol, 1.00 eq) , (PMB)
2NH (9.36 g, 35.8 mmol, 1.00 eq) in MeCN (50.0 mL) was added K
2CO
3 (5.94 g, 43.0 mmol, 1.20 eq) , the mixture was stirred at 80 ℃ for 2 hrs. LC-MS showed the desired mass detected. The mixture was filtered and concentrated to remove solvent. The crude was triturated with (PE/EA = 10: 1, V/V, 50.0 mL) at 20 ℃ for 2 hrs to get the desired product compound 47-2 (11.0 g, 30.5 mmol, 85.1%yield) as yellow solid.
H NMR: (400 MHz, CDCl
3) δ 8.50 (d, J = 4.8 Hz, 1H) , 7.18 (d, J = 8.0 Hz, 4H) , 6.88 -6.85 (m, 4H) , 6.81 (d, J = 4.8 Hz, 1H) , 4.76 (s, 4H) , 3.81 (s, 6H) .
Step 2. tert-butyl ( (2- (bis (4-methoxybenzyl) amino) pyrimidin-4-yl) methyl) carbamate
To a solution compound 47-2 (21.0 g, 58.3 mmol, 1.00 eq) in DCM (84.0 mL) , MeOH (336 mL) was added Boc
2O (24.2 g, 111 mmol, 25.4 mL, 1.90 eq) , Pd/C (2.10 g, 10%purity) and HOAc (22.1 g, 367 mmol, 21.0 mL, 6.30 eq) , then degassed and purged with H
2 three times, the mixture was stirred at 25 ℃ for 5 hrs (50 psi. ) . LC-MS showed the desire mass detected. The mixture was filtered and concentrated to remove solvent. The residue was purified by column (SiO
2, PE: EtOAc = 50: 1 to 3:1, Plate 1, PE: EtOAc = 3: 1, R
f = 0.3) to get the desired product compound 47-3 (22.0 g, 47.3 mmol, 81.2%yield) as colorless oil.
H NMR: (400 MHz, CDCl
3) δ 8.28 (d, J = 4.8 Hz, 1H) , 7.19 -7.17 (m, 4H) , 6.86 -6.83 (m, 4H) , 6.47 (d, J = 4.8 Hz, 1H) , 5.37 (br s, 1H) , 4.79 (s, 4H) , 4.26 (d, J =4.8 Hz, 2H) , 3.80 (s, 6H) , 1.46 (s, 9H) .
Step 3. 4- (aminomethyl) -N, N-bis (4-methoxybenzyl) pyrimidin-2-amine
To a solution of compound 47-3 (22.0 g, 47.4 mmol, 1.00 eq) in HCl/MeOH (4 M, 200 mL, 16.9 eq) was stirred a 20 ℃ for 4 hrs. LC-MS showed the desired mass detected. The mixture was concentrated to remove solvent to get the desired product compound 47-4 (18.9 g, 47.1 mmol, 99.5%yield, HCl) as white solid.
Step 4. N- ( (2- (bis (4-methoxybenzyl) amino) pyrimidin-4-yl) methyl) -4-nitrobenzamide
To a solution of compound 47-4 (9.00 g, 22.5 mmol, 1.00 eq, HCl) in DCM (100 mL) was added TEA (9.09 g, 89.8 mmol, 12.5 mL, 4.00 eq) at 0 ℃, followed by addition compound 47-5 (4.17 g, 22.5 mmol, 1.00 eq) in DCM (100 mL) dropwise, the mixture was stirred at 0 ℃ for 2 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (50.0 mL) and water (50.0 mL) , extracted with DCM (100 mL *3) , the combined organic layer was washed with brine (200 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was triturated with (PE/EA = 3: 1, V/V, 80 mL) for 2 hrs to get the desired product compound 47-6 (7.80 g, 15.1 mmol, 67.6%yield) as yellow solid.
H NMR of compound 47-6: (400 MHz, CDCl
3) δ 8.38 (d, J = 4.8 Hz, 1H) , 8.11 -8.09 (m, 2H) , 7.62 -7.60 (m, 2H) , 7.53 (br s, 1H) , 7.17 -7.16 (m, 4H) , 6.87 -6.84 (m, 4H) , 6.57 (d, J = 5.2 Hz, 1H) , 4.83 (br s, 4H) , 4.57 -4.56 (m, 2H) , 3.80 (s, 6H) .
Step 5. N- (4-methoxybenzyl) -3- (4-nitrophenyl) imidazo [1, 5-c] pyrimidin-5-amine and N, N-bis (4-methoxybenzyl) -3- (4-nitrophenyl) imidazo [1, 5-c] pyrimidin-5-amine
To a solution of compound 47-6 (5.80 g, 11.3 mmol, 1.00 eq) in DCM (24.0 mL) was added 2-MeOPyr (1.36 g, 12.4 mmol, 1.29 mL, 1.10 eq) , Tf
2O (3.82 g, 13.6 mmol, 2.24 mL, 1.20 eq) dropwise, the mixture was heated to 25 ℃ for 5 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (30.0 mL) and water (30.0 mL) , extracted with DCM (50.0 mL *3) , the combined organic layer was washed with brine (100 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-HPLC (column: Welch Ultimate XB -CN 250 *70 *10 um; mobile phase: [Hexane -EtOH (0.1%NH
3
. H
2O) ] ; B%: 10%-50%, 15 min) to get the desired product compound 47-7 &47-7A (3.80 g, 10.1 mmol, 89.6%yield) as red solid.
Step 6. 3- (4-nitrophenyl) imidazo [1, 5-c] pyrimidin-5-amine
Compound 47-7 &47-7A (3.80 g, 10.1 mmol, 1.00 eq) were taken up into a microwave tube in TFA (46.2 g, 405 mmol, 30.0 mL, 40.0 eq) . The sealed tube was heated at 100 ℃ for 2 hrs under microwave. LC-MS showed the desired mass detected. The mixture was diluted with DCM (100 mL) and water (100 mL) , adjusted the pH = 9 by aq. NaOH at 0 ℃, then extracted with DCM (300 mL *3) , the combine organic layer was washed with water (500 mL) , brine (500 mL) , dried over Na
2SO
4, filtered and concentrated to give a residue. The crude was purified by Prep-HPLC (column: Welch Ultimate XB -NH
2 250 *50 *10 um; mobile phase: [Hexane -EtOH (0.1%NH
3. H
2O) ] ; B%: 5%-45%, 15 min) . The crude was purified by column (SiO
2, PE: EtOAc = 1: 1 to 0: 1, Plate 1, PE: EtOAc = 0: 1, R
f = 0.15) to get the desired product compound 47-8 (400 mg, 1.57 mmol, 15.4%yield) as red solid.
H NMR: (400 MHz, DMSO) δ 8.34 -8.32 (m, 2H) , 7.84 -7.82 (m, 2H) , 7.50 (s, 1H) , 7.28 (d, J = 6.4 Hz, 1H) , 6.96 (d, J = 6.4 Hz, 1H) , 6.56 (brs, 2H) .
Step 7. 1-bromo-3- (4-nitrophenyl) imidazo [1, 5-c] pyrimidin-5-amine
To a solution of compound 47-8 (350 mg, 1.37 mmol, 1.00 eq) in DCM (6.00 mL) , ACN (6.00 mL) was added NBS (220 mg, 1.23 mmol, 0.900 eq) at -10 ℃ in portions, the mixture was stirred at -10℃ for 0.5 h. LC-MS showed the desired mass detected. The reaction mixture was diluted with water (20.0 mL) , extracted with DCM (100 mL *3) , the combined organic layer was washed with brine (150 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc = 3: 1 to 1: 1, Plate 1, PE: EtOAc =1:1, R
f = 0.6) to get the desired product compound 47-9 (90.0 mg, 269.3 μmol, 19.6%yield) as red solid.
H NMR: (400 MHz, CDCl
3) δ 8.33 (d, J = 8.8 Hz, 2H) , 7.86 -7.83 (m, 2H) , 7.39 (d, J = 6.4 Hz, 1H) , 6.80 (d, J = 7.2 Hz, 1H) , 6.74 (brs, 2H) .
Step 8. 1- (4- (5-amino-3- (4-nitrophenyl) imidazo [1, 5-c] pyrimidin-1-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 47-9 (90.0 mg, 269 μmol, 1.00 eq) , compound 47-10 (90.2 mg, 323 μmol, 1.20 eq) in dioxane (2.00 mL) , H
2O (0.400 mL) was added Na
2CO
3 (57.1 mg, 538 μmol, 2.00 eq) , Pd (PPh
3)
4 (31.1 mg, 26.9 μmol, 0.100 eq) , the mixture was stirred at 90 ℃ for 2 hrs. LC-MS showed compound 47-9 was consumed and the desired mass detected. The mixture was filtered and concentrated to remove solvent. The residue was purified by Prep-TLC (SiO
2, Plate 1, PE: EtOAc = 0: 1, R
f = 0.15) to get the desired product compound 47-11 (60.0 mg, 147.6 μmol, 54.8%yield) as yellow solid.
Step 9. 1- (4- (5-amino-3- (4-aminophenyl) imidazo [1, 5-c] pyrimidin-1-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 47-11 (55.0 mg, 135 μmol, 1.00 eq) in THF (1.00 mL) , MeOH (1.00 mL) was added Pd/C (10.0 mg, 10%purity) , then degassed and purged with H
2 three times, the mixture was stirred at 20 ℃ for 1 hr. LC-MS showed the desired mass detected. The mixture was filtered and concentrated to remove solvent to get the desired product compound 47-12 (30.0 mg, 79.2 μmol, 58.5%yield) as yellow solid.
Step 10. N- (4- (5-amino-1- (1-isobutyrylpiperidin-4-yl) imidazo [1, 5-c] pyrimidin-3-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 47)
To a solution of compound 47-12 (25.0 mg, 66.1 μmol, 1.00 eq) compound 47-13 (18.2 mg, 66.1 μmol, 1.00 eq) in Py (1.00 mL) was added EDCI (50.6 mg, 264 μmol, 4.00 eq) , the mixture was stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (3.00 mL) and water (3.00 mL) , extracted with DCM (3.00 mL *3) , the combined organic layer was washed with brine (5.00 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, plate 1, DCM: MeOH = 10: 1, R
f = 0.5) . The residue was purified by Prep-HPLC (column: Phenomenex luna C18 150 *25 mm *10 μm; mobile phase: [water (FA) -ACN] ; B%:14%-44%, 10 min) to get the desired product Compound 47 (5.54 mg, 8.54 μmol, 12.9%yield, 98.0%purity) as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 10.92 (s, 1H) , 8.75 -8.73 (m, 1H) , 8.70 (s, 1H) , 8.01 -7.96 (m, 1H) , 7.78 -7.76 (m, 2H) , 7.57 -7.55 (m, 2H) , 7.52 -7.49 (m, 1H) , 7.38 (d, J = 8.0 Hz, 1H) , 7.08 (d, J = 6.8 Hz, 1H) , 6.80 (d, J = 6.8 Hz, 1H) , 5.01 -4.95 (m, 1H) , 4.78 (d, J = 13.2 Hz, 1H) , 4.61 -4.56 (m, 2H) , 4.08 (d, J = 13.2 Hz, 1H) , 3.18 -3.11 (m, 2H) , 2.87 -2.80 (m, 1H) , 2.70 (brs, 1H) , 2.02 -1.88 (m, 4H) , 1.50 (d, J = 6.0 Hz, 6H) , 1.14 (t, J = 6.0 Hz, 6H) .
LC-MS: (M+H)
+: 636.4
HPLC: 98.0%purity (220 nm)
Example 25
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) -3-fluorophenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide (Compound 48)
To a solution of compound 48-1 (50.0 mg, 107 umol, 85.0%purity, 1.00 eq) and compound 48-2 (25.0 mg, 107 μmol, 1.00 eq) in DMF (3.00 mL) was added HATU (122 mg, 322 μmol, 3.00 eq) and DIEA (41.7 mg, 322 umol, 56.2 uL, 3.00 eq) . The mixture was stirred at 20℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (50.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (plate1, DCM: MeOH = 10: 1, R
f (P1) = 0.400) and further purified by prep-HPLC (HCl condition; column: 3_Phenomenex Luna C18.0 75.0 *30.0 mm *3.00 um; mobile phase: [water (HCl) -ACN] ; B%: 28.0%-48.0%, 8 min) . Then the mixture was concentrated under reduced pressure to remove MeCN and adjusted by sat. NaHCO
3 until pH was around 8. The aqueous part was extracted with DCM: MeOH = 10: 1 (20.0 mL *3) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. Compound 48 (9.31 mg, 14.8 umol, 13.8%yield, 97.4%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) : δ 13.67 (s, 1H) , 11.61 (s, 1H) , 8, 63 (d, J =1.2 Hz, 1H) , 8.07 (d, J = 0.8 Hz, 1H) , 7.96 -7.92 (m, 1H) , 7.73 -7.70 (m, 2H) , 7.44 -7.42 (m, 1H) , 7.38 -7.33 (m, 1H) , 7.26 -7.22 (m, 2H) , 7.10 (s, 1H) , 6.74 (s, 1H) , 4.58 (d, J = 11.2 Hz, 1H) , 4.20 (s, 2H) , 4.07 (d, J = 11.6 Hz, 1H) , 3.16 -3.09 (m, 1H) , 2.94 -2.85 (m, 2H) , 2.62 -2.59 (m, 1H) , 1.93 -1.85 (m, 2H) , 1.61 -1.45 (m, 2H) , 1.03 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 611.3
HPLC: purity: 97.4% (215 nm)
Example 26
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-isopropyl-6-methyl-4-oxo-1, 4-dihydropyridine-3-carboxamide (Compound 49)
To a solution of compound 49-2 (50.0 mg, 122 μmol, 92.7%purity, 1.00 eq) and compound 49-1 (32.3 mg, 110 μmol, 98.9%purity, 0.900 eq) in DMF (2.00 mL) was added HATU (70.0 mg, 184 μmol, 1.50 eq) and DIEA (47.6 mg, 368 μmol, 64.1 μL, 3.00 eq) . The mixture was stirred at 20℃ for 2hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (50.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) and further purified by prep-HPLC (FA condition; column: Phenomenex luna C18.0 150 *25.0 mm *10.0 um; mobile phase: [water (FA) -ACN] ; B%: 41.0%-71.0%, 10 min) . Then the mixture was concentrated under reduced pressure to remove MeCN and adjusted by sat. NaHCO
3 until pH was around 8. The aqueous part was extracted with DCM (20.0 mL *3) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. Compound 49 (18.9 mg, 28.7 μmol, 23.4%yield, 99.2%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 13.01 (s, 1H) , 11.60 (s, 1H) , 8.71 (s, 1H) , 7.81 -7.90 (m, 2H) , 7.48 -7.44 (m, 2H) , 7.29 -7.27 (m, 4H) , 7.06 (s, 1H) , 6.72 (s, 1H) , 4.81 -4.75 (m, 1H) , 4.59 (d, J = 4.8 Hz, 1H) , 4.29 (s, 2H) , 4.07 (d, J = 11.2 Hz, 1H) , 3.16 -3.09 (m, 1H) , 2.94 -2.85 (m, 2H) , 2.62 -2.59 (m, 1H) , 2.29 (s, 3H) , 1.93 -1.85 (m, 2H) , 1.62 -1.47 (m, 8H) , 1.04 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 649.5
HPLC: purity: 99.2% (215 nm)
Example 27
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 50)
Step 1. 2- (4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-yl) isoindoline-1, 3-dione
A mixture of compound 50-1 (9.00 g, 34.6 mmol, 1.00 eq) and compound 50-2 (7.69 g, 51.9 mmol, 1.50 eq) in HOAc (90.0 mL) was stirred at 120 ℃ for 12 hrs. LC-MS showed the desired mass was detected. The reaction mixture was filtered and the cake was washed with 100 mL MTBE, then concentrated under reduced pressure to give a residue. Compound 50-3 (11.3 g, 28.9 mmol, 83.6%yield) was obtained as an off-white solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 14.47 (s, 1H) , 8.27 -8.25 (m, 1H) , 8.13 -8.10 (m, 2H) , 8.02 -7.99 (m, 2H) , 7.80 -7.79 (m, 1H) .
Step 2. 3- (1, 3-dioxoisoindolin-2-yl) -4-iodo-1H-pyrazolo [3, 4-b] pyridine 7-oxide
To a solution of compound 50-3 (4.00 g, 10.2 mmol, 1.00 eq) in HOAc (50.0 mL) was added m-CPBA (7.08 g, 34.8 mmol, 85.0%purity, 3.40 eq) at 0 ℃. The mixture was stirred at 70 ℃ for 10 hrs. LC-MS showed the desired mass was detected. The reaction mixture was concentrated to give a residue. The residue was adjusted pH to 7 by sat. aq. NaHCO
3. Then the mixture was extracted with DCM (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by reversed-phase HPLC (0.100%FA condition) . Compound 50-4 (1.50 g, 3.69 mmol, 36.0%yield) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 13.39 (s, 1H) , 7.90 -7.89 (m, 3H) , 7.70 -7.69 (m, 2H) , 7.57 -7.53 (m, 1H) .
Step 3. 2- (6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-yl) isoindoline-1, 3-dione
To a solution of compound 50-4 (1.50 g, 3.69 mmol, 1.00 eq) in MeCN (20.0 mL) was added POCl
3 (2.26 g, 14.8 mmol, 1.37 mL, 4.00 eq) . The mixture was stirred at 20 ℃ for 3 hrs. LC-MS showed the desired mass was detected. The mixture was filtered and the cake was concentrated under reduced pressure to give a residue. And the filtrate was concentrated under reduced pressure to remove. The residue was adjusted pH to 9 by sat. aq NaHCO
3 and extracted with DCM 150 mL (50.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 50-5 (1.00 g, 2.36 mmol, 63.7%yield) was obtained as a yellow solid.
Step 4. 6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 50-5 (1.00 g, 2.36 mmol, 1.00 eq) in MeOH (30.0 mL) was added N
2H
4·H
2O (2.09 g, 40.8 mmol, 2.03 mL, 98.0%purity, 17.3 eq) . Then the mixture was stirred at 20 ℃ for 1 hr. LC-MS showed the desired mass was detected. The mixture was filtered and the cake was concentrated under reduced pressure to give a residue. And the filtrate was quenched by water (20.0 mL) , and then extracted with DCM (30.0 mL *3) . The organic layers were washed by water (20.0 mL *3) and brine (20.0 mL *3) . The organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 50-6 (250 mg, 0.849 mmol, 36.0%yield) was obtained as a yellow solid.
Step 5. 6-chloro-4-iodo-1-methyl-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 50-6 (140 mg, 475 μmol, 1.00 eq) in DMF (3.00 mL) was added K
2CO
3 (131 mg, 950 μmol, 2.00 eq) and MeI (85.9 mg, 605 μmol, 37.7 uL, 1.27 eq) at 0 ℃. Then the mixture was stirred at 20 ℃ for 3 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (10.0 mL) , and then extracted with EtOAc (10.0 mL *3) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) =0.600) . Compound 50-7 (80.0 mg, 214 μmol, 45.0%yield, 82.5%purity) was obtained as a yellow solid, confirmed by LC-MS.
LC-MS: (M+H)
+: 309.0
Step 6. 6-chloro-1-methyl-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-3-amine
Four batches was in parallel. To a solution of compound 7 (20.0 mg, 53.5 μmol, 82.5%purity, 1.00 eq) and compound 50-8 (7.15 mg, 42.8 μmol, 0.800 eq) in dioxane (1.50 mL) and H
2O (0.100 mL) was added DIEA (20.7 mg, 160 μmol, 27.9 μL, 3.00 eq) and Pd (t-Bu
3P)
2 (2.74 mg, 5.35 μmol, 0.100 eq) . The mixture was stirred at 130 ℃ for 1 hr under N
2 atmosphere under microwave. LC-MS showed the desired mass was detected. The mixture was purified by prep-TLC (PE: THF = 1: 1, R
f (P1) = 0.600) . Compound 50-9 (44.0 mg, 144 μmol, 67.6%yield) was obtained as a yellow solid.
Step 7. 1- (4- (3-amino-1-methyl-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
Two reactions were carried out in parallel. To a solution of compound 50-9 (22.0 mg, 72.4 μmol, 1.00 eq) and compound 50-10 (87.0 mg, 289 umol, 92.9%purity, 4.00 eq) in dioxane (1.50 mL) and H
2O (0.100 mL) was added DIEA (28.0 mg, 217 μmol, 37.8 μL, 3.00 eq) and Pd (t-Bu
3P)
2 (3.70 mg, 7.24 μmol, 0.100 eq) . The mixture was stirred at 120 ℃ for 1 hr under N
2 atmosphere under microwave. LC-MS showed the desired mass was detected. The mixture was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.600) . Crude 50-11 (70.0 mg) was obtained as a yellow solid.
Step 8. 1- (4- (3-amino-4- (4-aminophenyl) -1-methyl-1H-pyrazolo [3, 4-b] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 50-11 (70.0 mg, 166 μmol, 1.00 eq) in THF (8.00 mL) was added Pd/C (700 mg, 10.0%purity) , degassed and purged with H
2 (15 Psi) for 3 times, then stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The mixture was filtered and filtrate was concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 50-12 (16.0 mg, 40.7 μmol, 24.4%yield) was obtained as a yellow solid.
Step 9. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 50-12 (13.0 mg, 33.1 umol, 1.00 eq) and compound 50-13 (8.21 mg, 29.8 μmol, 0.900 eq) in pyridine (5.00 mL) was added EDCI (25.4 mg, 132 μmol, 4.00 eq) . Then the mixture was stirred at 20 ℃ for 1 hr. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with DCM (10.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH =10:1, R
f (P1) = 0.400) and prep-HPLC (ammonia hydroxide condition; column: Waters Xbridge 150 *25.0 mm *5.00 um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 33.0%-63.0%, 9 min) . Compound 50 (4.00 mg, 5.92 μmol, 17.8%yield, 96.1%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, CDCl
3) δ 10.89 (s, 1H) , 8.76 -8.75 (m, 1H) , 8.72 (s, 1H) , 8.02 -7.97 (m, 1H) , 7.81 -7.79 (m, 2H) , 7.56 -7.50 (m, 3H) , 7.41 -7.39 (m, 1H) , 6.75 (s, 1H) , 5.02 -4.96 (m, 1H) , 4.81 (d, J = 13.6 Hz, 1H) , 4.10 (d, J = 10.0 Hz, 1H) , 3.94 (s, 3H) , 3.88 (s, 2H) , 3.24 -3.18 (m, 1H) , 3.08 -3.02 (m, 1H) , 2.90 -2.84 (m, 1H) , 2.75 -2.69 (m, 1H) , 2.09 -2.02 (m, 2H) , 1.90 -1.84 (m, 2H) , 1.52 -1.50 (m, 6H) , 1.19 -1.15 (m, 6H) .
LC-MS: (M+H)
+: 650.2
HPLC: purity: 96.1% (215 nm)
Example 28
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridine-3-carboxamide (Compound 51)
Step 1. 5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridine-3-carboxylic acid
To a solution of compound 51-1 (100 mg, 406 μmol, 1.00 eq) and compound 51-2 (113 mg, 812 μmol, 2.00 eq) in dioxane (1.00 mL) was added Na
2CO
3 (2.00 M, 609 uL, 3.00 eq) and Pd (PPh
3)
4 (46.9 mg, 40.6 μmol, 0.100 eq) . The mixture was stirred at 90℃ for 12 hrs under N
2 atmosphere. LC-MS showed desired mass detected. The reaction mixture was diluted with H
2O 20.0 mL and adjusted pH to 3 by sat. aq citric acid. Then xtracted with DCM: IPA (3: 1, 40.0 mL *2) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 51-3 (60.0 mg, 242 umol, 59.7%yield) was obtained as a yellow solid.
Step 2. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridine-3-carboxamide
To a solution of compound 51-4 (50.0 mg, 122 μmol, 92.7%purity, 1.00 eq) and compound 51-3 (27.3 mg, 110 μmol, 0.900 eq) in DMF (2.00 mL) was added HATU (70.0 mg, 184 μmol, 1.50 eq) and DIEA (47.6 mg, 368 μmol, 64.1 μL, 3.00 eq) . Then the mixture was stirred at 20℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (50.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 51 (12.7 mg, 20.1 μmol, 15.8%yield, 95.9%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, DMSO-d
6) δ 13.10 (s, 1H) , 11.61 (s, 1H) , 8.70 (d, J =2.0 Hz, 1H) , 8.16 (d, J = 2.0 Hz, 1H) , 7.84 -7.82 (m, 2H) , 7.76 -7.72 (m, 2H) , 7.48 -7.46 (m, 2H) , 7.31 -7.27 (m, 2H) , 7.07 (s, 1H) , 6.73 (s, 1H) , 4.59 (d, J = 11.6 Hz, 1H) , 4.30 (s, 2H) , 4.07 (d, J = 12.8 Hz, 1H) , 3.93 (s, 3H) , 3.16 -3.10 (m, 1H) , 2.94 -2.86 (m, 2H) , 2.63 -2.58 (m, 1H) , 1.93 -1.85 (m, 2H) , 1.62 -1.45 (m, 2H) , 1.04 -0.99 (m, 6H) .
LC-MS: (M+H)
+: 607.1
HPLC: purity: 95.9% (215 nm)
Example 29
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-isopropyl-4-oxo-1, 4-dihydropyridine-3-carboxamide (Compound 52)
Step 1. methyl 5-bromo-4-hydroxynicotinate
To a solution of compound 52-1 (0.500 g, 2.29 mmol, 1.00 eq) in MeOH (5.00 mL) was added H
2SO
4 (1.84 g, 18.7 mmol, 1.00 mL, 8.18 eq) . The mixture was stirred at 80℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was diluted with H
2O 30.0 mL and extracted with DCM 100 mL (50.0 mL *2) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 52-2 (0.400 g, 1.72 mmol, 75.1%yield) was obtained as a white solid.
Step 2. methyl 5-bromo-1-isopropyl-4-oxo-1, 4-dihydropyridine-3-carboxylate
To a solution of compound 52-2 (200 mg, 861 μmol, 1.00 eq) in DMF (2.00 mL) was added Cs
2CO
3 (337 mg, 1.03 mmol, 1.20 eq) . The mixture was stirred at 75℃ for 30 min. The reaction mixture was cooled to 25℃, compound 52-3 (219 mg, 1.29 mmol, 129 μL, 1.50 eq) was added to the mixture. Then the mixture was stirred at 55℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered. The filtrate was directly used for further purification. The residue was purified by prep-HPLC (basic condition, column: Waters Xbridge 150 *25.0 mm *5.00 um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 7.00%-37.0%, 9 min) . Compound 52-4 (70.0 mg, 255 μmol, 29.6%yield) was obtained as a white solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 8.47 (d, J = 2.0 Hz, 1H) , 8.40 (d, J = 2.0 Hz, 1H) , 4.51 -4.39 (m, 1H) , 3.73 (s, 3H) , 1.41 -1.39 (m, 6H) .
Step 3. 5- (4-fluorophenyl) -1-isopropyl-4-oxo-1, 4-dihydropyridine-3-carboxylic acid
To a solution of compound 52-4 (70.0 mg, 255 μmol, 1.00 eq) and compound 52-5 (71.4 mg, 510 μmol, 2.00 eq) in dioxane (1.00 mL) was added Pd (PPh
3)
4 (29.5 mg, 25.5 μmol, 0.100 eq) and Na
2CO
3 (2.00 M, 383 μL, 3.00 eq) . The mixture was stirred at 90℃ for 12 hrs under N
2 atmosphere. LC-MS showed desired mass detected. The reaction mixture was concentrated to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.300) . Compound 52-6 (40.0 mg, 145 μmol, 56.9%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 8.61 (d, J = 2.0 Hz, 1H) , 7.68 (d, J = 2.0 Hz, 1H) , 7.62 -7.58 (m, 2H) , 7.19 -7.15 (m, 2H) , 4.39 -4.33 (m, 1H) , 1.63 -1.62 (m, 6H) .
Step 4. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-isopropyl-4-oxo-1, 4-dihydropyridine-3-carboxamide
To a solution of compound 52-7 (46.0 mg, 113 μmol, 92.7%purity, 1.00 eq) and compound 52-6 (28.0 mg, 101 μmol, 0.900 eq) in DMF (3.00 mL) was added HATU (64.4 mg, 169 μmol, 1.50 eq) and DIEA (43.8 mg, 339 umol, 59.0 uL, 3.00 eq) . Then the mixture was stirred at 20℃ for 2 hrs. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (50.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) and further purified by prep-HPLC (HCl condition; column: 3_Phenomenex Luna C18.0 75.0 *30.0 mm *3.00 um; mobile phase: [water (HCl) -ACN] ; B%: 38.0%-58.0%, 8 min) . Then the mixture was concentrated under reduced pressure to remove MeCN and adjusted by sat. NaHCO
3 until pH was around 8. The aqueous part was extracted with DCM (20.0 mL *3) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. Compound 52 (8.59 mg, 13.4 μmol, 11.7%yield, 98.7%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, CDCl
3) δ 12.86 (s, 1H) , 8.73 (s, 1H) , 7.91 -7.89 (m, 2H) , 7.59 -7.55 (m, 3H) , 7.52 -7.49 (m, 2H) , 7.20 -7.16 (m, 2H) , 7.09 (s, 1H) , 6.82 (s, 1H) , 4.86 (d, J = 10.0 Hz, 1H) , 4.36 -4.33 (m, 1H) , 4.10 (d, J = 10.0 Hz, 1H) , 3.91 (s, 2H) , 3.20 -3.14 (m, 1H) , 2.91 -2.86 (m, 2H) , 2.68 -2.62 (m, 1H) , 2.04 -1.97 (m, 2H) , 1.76 -1.71 (m, 2H) , 1.63 -1.62 (m, 6H) , 1.17 -1.15 (m, 6H) .
LC-MS: (M+H)
+: 635.1
HPLC: purity: 98.7% (215 nm)
Example 30
N- (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide (Compound 53)
Step 1. 6-bromo-1-chloropyrrolo [1, 2-a] pyrazine
To a solution of compound 53-1 (10.0 g, 65.5 mmol, 1.00 eq) in ACN (100 mL) was added NBS (11.6 g, 65.5 mmol, 1.00 eq) , the mixture was stirred at 90 ℃for 3 hrs. LC-MS showed the desired mass detected. The mixture was filtered and concentrated to remove solvent. The crude was purified by column (SiO
2, PE: EtOAc = 100: 1 to 10: 1, Plate 1, PE: EtOAc = 5: 1, R
f = 0.55) to get the desired product compound 53-2 (9.10 g, 39.3 mmol, 59.9%yield, 100%purity) as white solid.
LC-MS: (M+H)
+: 232.9
Step 2. 6-bromo-1-chloro-8-iodopyrrolo [1, 2-a] pyrazine
To a solution of compound 53-2 (9.10 g, 39.3 mmol, 1.00 eq) in ACN (100 mL) was added NIS (9.73 g, 43.2 mmol, 1.10 eq) in potions, the mixture was stirred at 80 ℃ for 5 hrs. LC-MS showed compound 53-2 was consumed completely and desired mass was detected. The mixture was filtered and concentrated to remove solvent. The residue was purified by column (SiO
2, PE: EtOAc = 100: 1 to 20: 1, Plate 1, PE: EtOAc = 5: 1, R
f = 0.5) to get the desired product compound 53-3 (12.0 g, 33.5 mmol, 85.4%yield) as yellow solid.
H NMR: (400 MHz, CDCl
3) δ 7.91 -7.90 (m, 1H) , 7.46 -7.45 (m, 1H) , 7.11 (s, 1H) .
Step 3. 6-bromo-8-iodo-N- (4-methoxybenzyl) pyrrolo [1, 2-a] pyrazin-1-amine
Compound 53-3 (12.0 g, 33.6 mmol, 1.00 eq) , PMBNH
2 (13.8 g, 101 mmol, 13.0 mL, 3.00 eq) and DIEA (8.68 g, 67.7 mmol, 11.7 mL, 2.00 eq) were taken up into a microwave tube in NMP (100 mL) . The sealed tube was heated at 100℃ for 8 hrs under microwave. LC-MS showed ~3%compound 53-3 remained, ~90%of desired mass detected. The reaction mixture was diluted with and water (300 mL) , extracted with EtOAc (100 mL *3) , the combined organic layer was washed with brine (200 mL *3) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column (SiO
2, PE: EtOAc =100: 1 to 20: 1, Plate 1, PE: EtOAc = 5: 1, R
f = 0.5) to get the desire product compound 53-4 (10.0 g, 21.8 mmol, 65.0%yield) as light yellow solid.
H NMR: (400 MHz, CDCl
3) δ 7.41 -7.40 (m, 1H) , 7.38 -7.35 (m, 2H) , 7.25 -7.23 (m, 1H) , 6.93 -6.89 (m, 2H) , 6.76 (s, 1H) , 6.46 (brs, 1H) , 4.69 (d, J = 4.8 Hz, 2H) .
Step 4. 8- (4-aminophenyl) -6-bromo-N- (4-methoxybenzyl) pyrrolo [1, 2-a] pyrazin-1-amine
To a solution of compound 53-4 (5.00 g, 10.9 mmol, 1.00 eq) , compound 53-5 (2.15 g, 9.82 mmol, 0.900 eq) in dioxane (20.0 mL) , H
2O (2.00 mL) was added K
2CO
3 (3.02 g, 21.83 mmol, 2.00 eq) , Pd (PPh
3)
4 (1.26 g, 1.09 mmol, 0.100 eq) at N
2 atmosphere, the mixture was stirred at 90 ℃ for 12 hrs. LC-MS showed the desired mass detected. The mixture was filtered and concentrated to remove solvent. The crude was purified by column (SiO
2, PE: EtOAc = 50: 1 to 2: 1, Plate 1, PE: EtOAc =1: 1, R
f = 0.5) to get the desired product compound 53-6 (2.00 g, 4.72 mmol, 43.2%yield, 100%purity) as yellow solid.
LC-MS: (M+H)
+: 425.0
Step 5. 1- (4- (8- (4-aminophenyl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 53-6 (2.00 g, 4.72 mmol, 1.00 eq) , compound 53-7 (1.58 g, 5.67 mmol, 1.20 eq) in dioxane (20.0 mL) , H
2O (2.00 mL) was added K
2CO
3 (1.31 g, 9.45 mmol, 2.00 eq) , Pd (PPh
3)
4 (546 mg, 472 umol, 0.100 eq) , the mixture was stirred at 90 ℃ for 12 hrs. LC-MS showed the desired mass detected. The mixture was filtered and concentrated to remove solvent. The crude was purified by Prep-HPLC (column: Phenomenex luna C18 (250 *70mm, 10 um) ; mobile phase: [water (FA) -ACN] ; B%: 20%-50%, 25 min) to get the desired product compound 53-8 (1.20 g, 2.42 mmol, 51.2%yield) as yellow solid.
Step 6. 1- (4- (8- (4-aminophenyl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 53-8 (1.20 g, 2.42 mmol, 1.00 eq) in MeOH (20.0 mL) was added Pd/C (500 mg, 10%purity) , then degassed and purged with H
2 three times, the mixture was stirred at 25 ℃ for 4 hrs (15 psi) . LC-MS showed compound 53-8 was consumed and the desired mass detected. The mixture was filtered and concentrated to remove solvent to get the desired product compound 53-9 (1.10 g, 2.21 mmol, 91.3%yield) as yellow solid.
Step 7. 5- (4-fluorophenyl) -4-hydroxy-N- (4- (6- (1-isobutyrylpiperidin-4-yl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) nicotinamide
To a solution of compound 53-9 (90.0 mg, 181 μmol, 1.00 eq) , compound 53-10 (46.4 mg, 199 μmol, 1.10 eq) in DCM (1.00 mL) was added DIEA (23.4 mg, 181 μmol, 31.5 μL, 1.00 eq) , HATU (103 mg, 271 umol, 1.50 eq) , the mixture was stirred at 25 ℃ for 2 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (3.00 mL) and water (3.00 mL) , extracted with DCM (3.00 mL *3) , the combined organic layer was washed with brine (5.00 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.45) to get the desired product compound 53-11 (57.0 mg, 79.9 μmol, 44.2%yield) as yellow solid.
Step 8. N- (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide
To a solution of compound 53-11 (57.0 mg, 80.0 μmol, 1.00 eq) in DCM (1.00 mL) was added TFA (1.54 g, 13.5 mmol, 1.00 mL, 169 eq) , the mixture was stirred at 50 ℃ for 12 hrs. LC-MS showed the desired mass detected. The reaction mixture was quenched by sat. aq. NaHCO
3 (20.0 mL) and diluted with water (10.0 mL) , extracted with DCM (10.0 mL *3) , the combined organic layer was washed with brine (20.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.5) to get the desired product Compound 53 (21.5 mg, 34.8 μmol, 43.6%yield, 96.0%purity) as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 12.81 (s, 1H) , 8.69 (s, 1H) , 8.81 (d, J = 8.0 Hz, 2H) , 7.62 (s, 1H) , 7.56 -7.53 (m, 2H) , 7.42 (d, J = 8.4 Hz, 2H) , 7.27 -7.25 (m, 1H) , 7.12 (t, J = 8.8 Hz, 2H) , 7.05 (d, J = 4.8 Hz, 1H) , 6.50 (s, 1H) , 4.83 -4.80 (m, 1H) , 4.12 -4.09 (m, 1H) , 3.25 (brs, 1H) , 3.11 -3.10 (m, 1H) , 2.89 -2.86 (m, 1H) , 2.76 -2.73 (m, 1H) , 2.17 -2.08 (m, 2H) , 1.74 -1.65 (m, 2H) , 1.17 -1.16 (m, 6H) .
LC-MS: (M+H)
+: 593.2
HPLC: 96.0%purity (220 nm)
Example 31
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide (Compound 54)
Step 1. 2-fluoro-4-iodonicotinonitrile
To a solution of compound 54-1 (25.0 g, 204 mmol, 1.00 eq) in THF (300 mL) was added TMPMgCl
. LiCl (1.00 M, 307 mL, 1.50 eq) at -60 ℃. The mixture was stirred at -60 ℃ for 1 hr. I
2 (57.1 g, 225 mmol, 45.3 mL, 1.10 eq) in THF (100 mL) was added to the reaction mixture at -60 ℃, and stirred at 25 ℃ for 12 hrs. TLC indicated compound 54-1 was consumed completely and two new spots formed. The reaction was clean according to TLC. (Petroleum ether: Ethyl acetate = 3: 1) . The reaction mixture was quenched by addition sat. aq NH
4Cl 250 mL at 0 ℃, and then diluted with H
2O 200 mL and extracted with EtOAc 400 mL (200 mL *2) . The combined organic layers were washed with brine 400 mL (200 mL *2) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiO
2, Petroleum ether: Ethyl acetate = 100: 1 to 0: 1) . Compound 54-2 (10.0 g, 40.3 mmol, 19.6%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 8.09 (d, J = 5.2 Hz, 1H) , 7.80 (d, J = 5.6 Hz, 1H) .
Step 2. 2-hydrazineyl-4-iodonicotinonitrile
To a solution of compound 54-2 (9.20 g, 37.1 mmol, 1.00 eq) in MeOH (100 mL) was added N
2H
4
. H
2O (15.1 g, 296 mmol, 14.2 mL, 98.0%purity, 8.00 eq) . The mixture was stirred at 15 ℃ for 0.5 hr. LC-MS showed desired mass detected. The reaction mixture was filtered. The cake was washed with 100 mL EtOH, then concentrated under reduced pressure to give a residue. Compound 54-3 (9.00 g, 34.6 mmol, 93.3%yield) was obtained as a yellow solid.
Step 3. 4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 54-3 (9.00 g, 34.6 mmol, 1.00 eq) in DCM (50.0 mL) was added TFA (81.0 g, 710 mmol, 52.6 mL, 20.5 eq) in anisole (5.00 mL) . The mixture was stirred at 20 ℃ for 0.5 hr. LC-MS showed desired mass detected. The reaction mixture was concentrated to give a residue. The residue was adjusted pH to 9 by NH
3·H
2O, then filtered. The cake was washed by 20.0 mL MTBE, then concentrated to obtain product. Compound 54-4 (8.50 g, 32.6 mmol, 94.4%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 12.34 (brs, 1H) , 7.92 (d, J = 4.4 Hz, 1H) , 7.43 (d, J = 4.8 Hz, 1H) , 5.16 (s, 2H)
Step 4. 2- (4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-yl) isoindoline-1, 3-dione
A mixture of compound 54-4 (8.50 g, 32.6 mmol, 1.00 eq) and compound 54-5 (7.26 g, 49.0 mmol, 1.50 eq) in HOAc (80.0 mL) was stirred at 120 ℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered and the cake was washed with 100 mL MTBE, then concentrated under reduced pressure to give a residue. Compound 54-6 (11.0 g, 28.2 mmol, 86.2%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 14.47 (s, 1H) , 8.25 (d, J = 4.8 Hz, 1H) , 8.13 -8.11 (m, 2H) , 8.02 -7.99 (m, 2H) , 7.79 (d, J = 4.8 Hz, 1H) .
Step 5. 3- (1, 3-dioxoisoindolin-2-yl) -4-iodo-1H-pyrazolo [3, 4-b] pyridine 7-oxide
To a solution of compound 54-6 (8.00 g, 20.5 mmol, 1.00 eq) in HOAc (100 mL) was added m-CPBA (16.6 g, 82.0 mmol, 85.0%purity, 4.00 eq) at 0 ℃. The mixture was stirred at 60 ℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered. The filtrate was concentrated to remove HOAc, then diluted with 100 mL H
2O, and adjusted pH to 9 by sat. aq NaHCO
3, then extracted with EtOAc 300 mL (100 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was triturated with MTBE 50.0 mL at 25 ℃ for 20 mins. The filtrate was purified by column chromatography (SiO
2, Petroleum ether: EtOAc =100: 1 to 0: 1) . (Plate 1: DCM: MeOH = 10: 1) . Compound 54-7 (4.00 g, 9.85 mmol, 48.0%yield) was obtained as a yellow solid.
Step 6. 2- (6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-yl) isoindoline-1, 3-dione
To a solution of compound 54-8 (4.00 g, 9.85 mmol, 1.00 eq) in MeCN (40.0 mL) was added POCl
3 (15.1 g, 98.4 mmol, 9.15 mL, 10.0 eq) at 0 ℃. The mixture was stirred at 25 ℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered and the cake was washed with 100 mL MeOH, then concentrated under reduced pressure to give a residue. Compound 54-9 (2.00 g, 4.71 mmol, 47.8%yield) was obtained as a yellow solid.
Step 7. 6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 54-8 (2.00 g, 4.71 mmol, 1.00 eq) in MeOH (4.00 mL) was added N
2H
4
. H
2O (7.22 g, 141 mmol, 7.01 mL, 98%purity, 30.0 eq) . The mixture was stirred at 25 ℃ for 2 hrs. LC-MS showed desired mass detected. The reaction mixture was added 50.0 mL H
2O and extracted with EtOAc 150 mL (50 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 54-9 (1.30 g, 4.41 mmol, 93.7%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 7.51 (s, 1H) , 5.27 (s, 2H) .
Step 8. 6-chloro-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 54-9 (200 mg, 679 μmol, 1.00 eq) and compound 54-10 (119 mg, 713 μmol, 1.05 eq) in dioxane (8.00 mL) was added K
2CO
3 (281 mg, 2.04 mmol, 3.00 eq) in H
2O (2.00 mL) and Pd (PPh
3)
4 (78.4 mg, 67.9 μmol, 0.100 eq) . The mixture was stirred at 90℃ for 3hrs under N
2 atmosphere. TLC (PE: THF = 2: 1, R
f (P1) = 0.400) showed the starting material was consumed completely and there were new spots. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (PE: THF = 1: 1, R
f (P1) = 0.500) . Compound 54-11 (195 mg, 394 μmol, 58.0%yield, 58.5%purity) was obtained as a yellow solid, confirmed by LC-MS.
LC-MS: (M+H)
+: 290.2
Step 9. 1- (4- (3-amino-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
To a solution of compound 54-11 (175 mg, 353 μmol, 58.5%purity, 1.00 eq) and compound 54-12 (493 mg, 1.77 mmol, 5.00 eq) in dioxane (12.0 mL) was added K
3PO
4 (225 mg, 1.06 mmol, 3.00 eq) in H
2O (3.00 mL) and Xphos-Pd-G
2 (55.6 mg, 70.7 μmol, 0.200 eq) . The mixture was stirred at 100℃ for 2hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH =10:1, R
f (P1) = 0.400) . Compound 54-13 (85.0 mg, 173 μmol, 48.9%yield, 82.8%purity) was obtained as a yellow solid, confirmed by LC-MS.
LC-MS: (M+H)
+: 407.2
Step 10. 1- (4- (3-amino-4- (4-aminophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 54-13 (80.0 mg, 163 μmol, 82.8%purity, 1.00 eq) in THF (30.0 mL) was added Pd/C (800 mg, 10.0%purity) , degassed and purged with H
2 (15 Psi) for 3 times, then stirred at 20 ℃ for 2 hrs. LC-MS showed the desired mass was detected. The mixture was filtered and filter was concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 54-14 (35.0 mg, 91.4 μmol, 56.0%yield, 98.8%purity) was obtained as a yellow solid, confirmed by LC-MS.
LC-MS: (M+H)
+: 379.4
Step 11. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -5- (4-fluorophenyl) -4-hydroxynicotinamide
To a solution of compound 54-14 (30.0 mg, 78.3 μmol, 98.8%purity, 1.00 eq) and compound 54-15 (16.4 mg, 70.5 μmol, 0.900 eq) in DMF (5.00 mL) was added HATU (44.6 mg, 117 μmol, 1.50 eq) and DIEA (30.3 mg, 235 μmol, 40.9 μL, 3.00 eq) . Then the mixture was stirred at 20℃ for 1hr. LC-MS showed the desired mass was detected. The reaction mixture was quenched by sat. NaHCO
3 (15.0 mL) , and then extracted with EtOAc (10.0 mL *5) . The combined organic layers were washed by water (10.0 mL *4) and brine (10.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) and further purified by prep-HPLC (NH
3·H
2O condition; column: Waters Xbridge 150 *25.0 mm *5.00 um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 20.0%-50.0%, 32min) . Then the mixture was concentrated under reduced pressure to remove MeCN and freeze-dried to give a residue. Compound 54 (7.06 mg, 11.6 μmol, 14.9%yield, 98.2%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, MeOD) δ 8.71 (d, J = 1.6 Hz, 1H) , 7.97 (d, J = 1.6 Hz, 1H) , 7.91 -7.89 (m, 2H) , 7.67 -7.60 (m, 4H) , 7.20 -7.16 (m, 2H) , 6.93 (s, 1H) , 4.71 (d, J = 14.4 Hz, 1H) , 4.21 (d, J = 14.0 Hz, 1H) , 3.27 -3.24 (m, 1H) , 3.16 -3.10 (m, 1H) , 3.05 -2.98 (m, 1H) , 2.82 -2.75 (m, 1H) , 2.08 -2.00 (m, 2H) , 1.92 -1.78 (m, 2H) , 1.16 -1.11 (m, 6H) .
LC-MS: (M+H)
+: 594.4
HPLC: purity: 98.2% (215 nm)
Example 32
N- (4- (4-amino-1- (3-oxooctahydroindolizin-7-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 55)
Step 1. 7-hydroxyhexahydroindolizin-3 (2H) -one
To a solution of compound 55-1 (900 mg, 5.88 mmol, 1.00 eq) in MeOH (10.0 mL) was added NaBH
4 (445 mg, 11.7 mmol, 2.00 eq) at 0℃, the mixture was stirred at 25℃ for 1 hr. TLC (Plate 1, DCM: MeOH = 10: 1) showed compound 55-1 was consumed and new spot was formed. The mixture was quenched by sa.aq. NH
4Cl (20.0 mL) , extracted with EtOAc/MeOH (V/V, 10/1, 20.0 mL *3) , the combined organic layer was washed with brine (40.0 mL) , dried over Na
2SO
4, filtered and concentrated to remove solvent to get the desired product compound 55-2 (300 mg, 1.93 mmol, 32.9%yield) as colorless oil.
H NMR: (400 MHz, CDCl
3) δ 4.10 -4.05 (m, 1H) , 3.74 -3.69 (m, 1H) , 3.48 -3.42 (m, 1H) , 2.63 -2.56 (m, 1H) , 2.34 -2.28 (m, 2H) , 2.20 -2.09 (m, 2H) , 1.93 -1.88 (m, 1H) , 1.63 -1.53 (m, 1H) , 1.33 -1.26 (m, 1H) , 1.15 -1.07 (m, 1H) .
Step 2. 7- (3-bromo-4- ( (2, 4-dimethoxybenzyl) amino) -1H-pyrazolo [4, 3-c] pyridin-1-yl) hexahydroindolizin-3 (2H) -one
To a solution of compound 55-3 (100 mg, 275 μmol, 1.00 eq) , compound 55-2 (55.5 mg, 357 μmol, 1.30 eq) in THF (2.00 mL) was added PPh
3 (361 mg, 1.38 mmol, 5.00 eq) , DIAD (167 mg, 825 μmol, 160 μL, 3.00 eq) at 0℃, the mixture was stirred at 25℃ for 2 hrs under N
2. LC-MS showed compound 55-2 was consumed and the desired mass detected. The reaction mixture was diluted with water (10.0 mL) , extracted with DCM (10.0 mL *3) , the combined organic layer was washed with brine (20.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude was purified by column (SiO
2, DCM: MeOH =1:0 to 50: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.5) to get the desired product compound 55-4 (70.0 mg, 139 μmol, 50.8%yield) as colorless oil.
H NMR: (400 MHz, CDCl
3) δ 7.90 (d, J = 6.4 Hz, 1H) , 7.29 (d, J = 8.4 Hz, 1H) , 6.52 -6.48 (m, 3H) , 6.45 -6.42 (m, 1H) , 4.76 (brs, 1H) , 4.73 (d, J = 6.0 Hz, 1H) , 4.23 -4.19 (m, 1H) , 4.07 -4.02 (m, 1H) , 3.89 (s, 3H) , 3.80 (s, 3H) , 3.36 -3.29 (m, 1H) , 2.43 -2.39 (m, 2H) , 2.34 -2.29 (m, 1H) , 2.28 -2.23 (m, 1H) , 2.13 -2.10 (m, 1H) , 2.00 -1.96 (m, 1H) , 1.78 -1.70 (m, 1H) , 1.58 -1.53 (m, 1H) .
Step 3. 7- (3- (4-aminophenyl) -4- ( (2, 4-dimethoxybenzyl) amino) -1H-pyrazolo [4, 3-c] pyridin-1-yl) hexahydroindolizin-3 (2H) -one
To a solution of compound 55-4 (60.0 mg, 119 μmol, 1.00 eq) , compound 55-5 (39.4 mg, 179 μmol, 1.50 eq) in THF (2.00 mL) , H
2O (0.200 mL) was added K
2CO
3 (33.1 mg, 239 μmol, 2.00 eq) , Pd (PPh
3)
4 (13.8 mg, 11.9 μmol, 0.100 eq) , the mixture was stirred at 70℃ for 2 hrs under N
2. LC-MS showed compound 4 was consumed and the desired mass detected. The mixture was filtered and concentrated to remove solvent. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.55) to get the desired product compound 55-6 (30.0 mg, 58.5 μmol, 48.8%yield, -purity) as yellow solid.
Step 4. N- (4- (4- ( (2, 4-dimethoxybenzyl) amino) -1- (3-oxooctahydroindolizin-7-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 55-6 (20.0 mg, 39.0 μmol, 1.00 eq) , compound 55-7 (10.7 mg, 39.0 μmol, 1.00 eq) in DCM (1.00 mL) was added DIEA (25.2 mg, 195 μmol, 33.9 μL, 5.00 eq) , HATU (22.2 mg, 58.5 μmol, 1.50 eq) , the mixture was stirred at 25℃ for 1 h. LC-MS showed compound 55-6 was consumed and the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (3.00 mL) and water (3.00 mL) , extracted with DCM (3.00 mL *3) , the combined organic layer was washed with brine (5.00 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue to get the desired product compound 55-8 (30.0 mg, 38.9 μmol, 66.5%yield) as yellow solid.
Step 5. N- (4- (4-amino-1- (3-oxooctahydroindolizin-7-yl) -1H-pyrazolo [4, 3-c] pyridin-3-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 55-8 (25.0 mg, 32.4 μmol, 1.00 eq) in DCM (1.00 mL) was added TFA (1.54 g, 13.5 mmol, 1.00 mL, 415 eq) , the mixture was stirred at 50℃ for 2 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (10.0 mL) and water (5.00 mL) , extracted with DCM (10.0 mL *3) , the combined organic layer was washed with brine (20.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.4) to get the desired product Compound 55 (22.5 mg, 35.0 μmol, 90.0%yield, 96.6%purity) .
H NMR: (400 MHz, CDCl
3) δ 10.87 (s, 1H) , 8.75 -8.73 (m, 1H) , 8.71 (s, 1H) , 8.00 -7.96 (m, 1H) , 7.86 (d, J = 6.4 Hz, 1H) , 7.81 -7.79 (m, 2H) , 7.67 -7.65 (m, 2H) , 7.52 -7.48 (m, 1H) , 7.39 (d, J = 8.0 Hz, 1H) , 6.68 (d, J = 6.0 Hz, 1H) , 5.15 (brs, 2H) , 5.01 -4.95 (m, 1H) , 4.89 (brs, 1H) , 4.34 -4.30 (m, 1H) , 4.10 -4.06 (m, 1H) , 3.48 -3.42 (m, 1H) , 2.43 -2.39 (m, 3H) , 2.29 -2.20 (m, 2H) , 2.07 -2.02 (m, 1H) , 1.84 -1.76 (m, 1H) , 1.60 -1.55 (m, 1H) , 1.50 (d, J = 6.8 Hz, 6H) .
LC-MS: (M+H)
+: 620.3
HPLC: purity: 96.6% (215 nm)
Example 33
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -N- (4-fluorophenyl) cyclopropane-1, 1-dicarboxamide (Compound 56)
Step 1. 3- (1, 3-dioxoisoindolin-2-yl) -4-iodo-1H-pyrazolo [3, 4-b] pyridine 7-oxide
To a solution of compound 56-1 (5.86 g, 15.0 mmol, 1.00 eq) in DCM (60.0 mL) was added UHP (5.09 g, 54.0 mmol, 3.60 eq) at 0℃, then added TFAA (9.46 g, 45.0 mmol, 6.27 mL, 3.00 eq) dropwise at 0℃. The reaction mixture was stirred at 25℃ for 4 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The mixture was added MeCN (300 mL) , stirred at 20℃ for 10 min. Then the mixture was filtered. The cake was washed by MeCN (50.0 mL *3) and concentrated under reduced pressure to give a residue. Compound 56-2 (5.45 g, 13.4 mmol, 89.3%yield) was obtained as an off-white solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 15.42 (s, 1H) , 8.23 (d, J = 6.4 Hz, 1H) , 8.14 -8.11 (m, 2H) , 8.03 -8.00 (m, 2H) , 7.67 (d, J = 6.4 Hz, 1H) .
Step 2. 2- (6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-yl) isoindoline-1, 3-dione
To a solution of compound 56-2 (5.45 g, 13.4 mmol, 1.00 eq) in MeCN (60.0 mL) was added POCl
3 (45.2 g, 295 mmol, 27.4 mL, 22.0 eq) at 0 ℃. The mixture was stirred at 20℃ for 3 hrs. LC-MS showed the desired mass was detected. The mixture was added MTBE (100 mL) and filtered. And the cake was washed by MTBE (20.0 mL *3) , concentrated under reduced pressure to give a residue. Compound 56-3 (5.23 g, 12.3 mmol, 91.7%yield) was obtained as a white solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 14.65 (s, 1H) , 8.13 -8.11 (m, 2H) , 8.02 -8.00 (m, 2H) , 7.93 (s, 1H) .
Step 3. 6-chloro-4-iodo-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 56-3 (5.65 g, 13.3 mmol, 1.00 eq) in MeOH (60.0 mL) was added N
2H
4·H
2O (11.5 g, 226 mmol, 11.2 mL, 17.0 eq) . Then the mixture was stirred at 20 ℃ for 1 hr. LC-MS showed the desired mass was detected. The mixture was filtered and the cake was concentrated under reduced pressure to give a residue. And the filter was quenched by water (60.0 mL) , and then extracted with DCM (60.0 mL *3) and DCM: MeOH = 10: 1 (60 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 56-4 (2.50 g, 8.49 mmol, 63.8%yield) was obtained as a yellow solid.
Step 4. 6-chloro-4-iodo-1-methyl-1H-pyrazolo [3, 4-b] pyridin-3-amine
To a solution of compound 56-4 (1.00 g, 3.40 mmol, 1.00 eq) in DMF (20.0 mL) was added K
2CO
3 (938 mg, 6.79 mmol, 2.00 eq) and MeI (1.37 g, 9.64 mmol, 0.600 mL, 2.84 eq) at 0℃. Then the mixture was stirred at 20 ℃ for 10 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (60.0 mL) , and then extracted with EtOAc (50.0 mL *5) . The combined organic layers were washed by water (100 mL *4) and brine (100 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue (DCM: MeOH = 10: 1, R
f (P1) = 0.800) was purified by column chromatography (SiO
2, DCM: MeOH = 100: 0 to 100: 1) . Compound 56-5 (450 mg, 1.46 mmol, 42.9%yield) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 7.51 (s, 1H) , 5.37 (s, 2H) , 3.72 (s, 3H) .
Step 5. 6-chloro-1-methyl-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-3-amine
Four batches was in parallel. To a solution of compound 56-5 (100 mg, 324 μmol, 1.00 eq) and compound 56-6 (40.5 mg, 243 μmol, 0.750 eq) in dioxane (1.50 mL) and H
2O (0.100 mL) was added DIEA (125 mg, 972 μmol, 169 uL, 3.00 eq) and Pd (t-Bu
3P)
2 (16.5 mg, 32.4 μmol, 0.100 eq) . The mixture was stirred at 125℃ for 30 min under N
2 atmosphere under microwave. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (Petroleum ether: THF = 1: 1, R
f (P1) = 0.500) . Compound 56-7 (124 mg, 408 μmol, 31.4%yield) was obtained as a yellow solid.
Step 6. 1- (4- (3-amino-1-methyl-4- (4-nitrophenyl) -1H-pyrazolo [3, 4-b] pyridin-6-yl) -3, 6-dihydropyridin-1 (2H) -yl) -2-methylpropan-1-one
Two batches was in parallel. To a solution of compound 56-7 (62.0 mg, 204 μmol, 1.00 eq) and compound 56-8 (214 mg, 714 μmol, 92.9%purity, 3.50 eq) in dioxane (1.50 mL) and H
2O (0.100 mL) was added DIEA (79.1 mg, 612 umol, 106 uL, 3.00 eq) and Pd (t-Bu
3P)
2 (10.4 mg, 20.4 μmol, 0.100 eq) . The mixture was stirred at 120℃ for 1 hr under N
2 atmosphere under microwave. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.500) . Compound 56-9 (100 mg, 237 μmol, 29.1%yield) was obtained as a yellow solid.
Step 7. 1- (4- (3-amino-4- (4-aminophenyl) -1-methyl-1H-pyrazolo [3, 4-b] pyridin-6-yl) piperidin-1-yl) -2-methylpropan-1-one
To a solution of compound 56-9 (100 mg, 237 μmol, 1.00 eq) in THF (10.0 mL) was added Pd/C (10.0 mg, 10.0%purity) , degassed and purged with H
2 (15 Psi) for 3 times, then stirred at 20℃ for 2 hrs. LC-MS showed the desired mass was detected. The mixture was filtered and filter was concentrated under reduced pressure to give a residue. Compound 56-10 (90.0 mg, 229 μmol, 96.4%yield) was obtained as a brown solid.
Step 8. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-pyrazolo [3, 4-b] pyridin-4-yl) phenyl) -N- (4-fluorophenyl) cyclopropane-1, 1-dicarboxamide
To a solution of compound 56-10 (50.0 mg, 127 μmol, 1.00 eq) in pyridine (1.00 mL) was added compound 56-11 (28.4 mg, 127 μmol, 1.00 eq) , EDCI (97.6 mg, 509 μmol, 4.00 eq) . Then the mixture was stirred at 20℃ for 1 hr. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (10.0 mL) , and then extracted with DCM (30.0 mL) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with DCM (10.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) and further purified by prep-HPLC (ammonia hydroxide condition; column: Waters Xbridge 150 *25.0 mm *5.00 um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 40.0%-70.0%, 9 min) . Then the mixture was concentrated under reduced pressure to remove MeCN. And the mixture was freeze dried to give a product. Compound 56 (9.50 mg, 14.9 μmol, 11.7%yield, 94.1%purity) was obtained as confirmed by H NMR and LC-MS.
H NMR: (400 MHz, CDCl
3) δ 9.64 (s, 1H) , 8.62 (s, 1H) , 7.73 –7.71 (m, 2H) , 7.57 –7.55 (m, 2H) , 7.49 –7.46 (m, 2H) , 7.09 –7.04 (m, 2H) , 6.75 (s, 1H) , 4.81 (d, J = 15.2 Hz, 1H) , 4.11 (d, J = 13.2 Hz, 1H) , 3.94 (s, 3H) , 3.24 –3.18 (m, 1H) , 3.09 –3.03 (m, 1H) , 2.89 –2.84 (m, 1H) , 2.75 –2.69 (m, 1H) , 2.10 –2.02 (m, 2H) , 1.91 –1,89 (m, 2H) , 1.77 –1.72 (m, 4H) , 1.19 –1.15 (m, 6H) .
LC-MS: (M+H)
+: 598.3
HPLC: purity: 94.1% (215 nm)
Example 34
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -4-ethoxy-1- (4-fluorophenyl) -2-oxo-1, 2-dihydropyridine-3-carboxamide (Compound 57)
To a solution of compound 57-1 (30 mg, 76.63 μmol, 1 eq) and compound 57-2 (22 mg, 79.35 μmol, 1.04 eq) in Py (2 mL) was added EDCI (30.00 mg, 156.49 μmol, 2.04 eq) . The mixture was stirred at 25℃ for 2 hrs. An aliquot was taken from the reaction mixture and added to MeOH, LCMS showed compound 57-1 was consumed and desired MS was detected. Dilute the reaction mixture with H
2O (10 mL) and extracted it with EtOAc (15 mL *2) . Wash the combined organic layers with H
2O (40 mL *3) followed by NH
4Cl (sat., 50 mL) , dry it over Na
2SO
4, filter and concentrate it under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: Waters Xbridge 150*25mm*5um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 34%-64%, 9min) , then concentrated to remove MeCN and freeze-dried to get Compound 57 (25 mg, 37.11 μmol, 41.39%yield, 96.6%purity) as confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 10.38 (s, 1H) , 7.88 -7.74 (m, 3H) , 7.55 -7.30 (m, 6H) , 7.22 (s, 1H) , 6.71 (s, 1H) , 6.50 (d, J = 7.6 Hz, 1H) , 4.60 (d, J = 12.4 Hz, 1H) , 4.34 (brs, 1H) , 4.30 -4.15 (m, 2H) , 4.08 (d, J = 12.4 Hz, 1H) , 3.76 (s, 3H) , 3.20 -3.05 (m, 1H) , 2.95 -2.80 (m, 2H) , 2.65 -2.55 (m, 1H) , 2.05 -1.80 (m, 2H) , 1.80 -1.45 (m, 2H) , 1.30 (t, J = 7.2 Hz, 3H) , 1.10 -0.85 (m, 6H) .
Example 35
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -2, 5-dioxo-1-phenyl-1, 2, 5, 6, 7, 8-hexahydroquinoline-3-carboxamide (Compound 58)
To a solution of compound 58-1 (30 mg, 76.63 μmol, 1 eq) in Py (2 mL) was added compound 58-2 (24.00 mg, 84.72 μmol, 1.11 eq) and EDCI (30 mg, 156.49 μmol, 2.04 eq) . The mixture was stirred at 25℃ for 2 hrs. An aliquot was taken from the reaction mixture and added to MeOH, LCMS showed compound 58-1 was consumed and desired MS was detected. Dilute the reaction mixture with H
2O (5 mL) and extracte it with EtOAc (5 mL *2) . Wash the combined organic layers with H
2O (15 mL *3) followed by NH
4Cl (sat., 30 mL) , dry it over Na
2SO
4, filter and concentrate it under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: Phenomenex luna C18 150*25mm*10um; mobile phase: [water (FA) -ACN] ; B%: 53%-73%, 9min) , then concentrated to remove MeCN, and adjust to pH = 8 with NaHCO
3 (sat. ) , then extracted with EtOAc (20 ml*2) , dried it over Na
2SO
4, filtered and concentrated it under reduced pressure to get desired Compound 58 (25 mg, 37.95 μmol, 49.53%yield, 99.7%purity) as confrimed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 11.57 (s, 1H) , 8.96 (s, 1H) , 7.98 -7.80 (m, 2H) , 7.75 -7.55 (m, 3H) , 7.53 -7.38 (m, 4H) , 7.22 (s, 1H) , 6.72 (s, 1H) , 4.70 -4.53 (m, 2H) , 4.40 -4.25 (m, 2H) , 4.15 -4.00 (m, 1H) , 3.76 (s, 3H) , 3.23 -3.05 (m, 1H) , 2.98 -2.80 (m, 2H) , 2.63 -2.54 (m, 3H) , 2.10 -1.80 (m, 4H) , 1.75 -1.48 (m, 2H) , 1.10 -0.95 (m, 6H) .
Example 36
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -5- (4-fluorophenyl) -1-methyl-4-oxo-1, 4-dihydropyridine-3-carboxamide (Compound 59)
To a solution of compound 59-2 (30 mg, 76.63 μmol, 1 eq) in DMF (3 mL) was added HATU (43.70 mg, 114.94 umol, 1.5 eq) , DIEA (19.81 mg, 153.25 μmol, 26.69 μL, 2 eq) and compound 59-1 (19 mg, 76.85 μmol, 1 eq) and then the mixture was stirred at 25℃ for 2 hr. An aliquot was taken from the reaction mixture and added to MeOH, LCMS showed compound 59-2 was consumed and desired MS was detected. Dilute the reaction mixture with H
2O (10 mL) and extracte it with EtOAc (5 mL *2) . Wash the combined organic layers with H
2O (10 mL *3) followed by brine (20 mL) , dry it over Na
2SO
4, filter and concentrate it under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: Waters Xbridge 150*25mm*5um; mobile phase: [water (ammonia hydroxide v/v) -ACN] ; B%: 38%- 68%, 9min) and concentrated to remove MeCN and freeze-dried to get Compound 59 (18 mg, 28.71 umol, 37.47%yield, 99%purity) as confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 13.10 (s, 1H) , 8.70 (d, J = 6.4 Hz, 1H) , 8.15 (d, J = 2.0 Hz, 1H) , 7.83 (d, J = 8.8 Hz, 2H) , 7.79 -7.68 (m, 2H) , 7.46 (d, J = 8.4 Hz, 2H) , 7.33-7.20 (m, 3H) , 6.73 (s, 1H) , 4.60 (d, 1H, J = 12.8 Hz) , 4.36 (brs, 2H) , 4.17 -4.00 (m, 1H) , 3.93 (s, 3H) , 3.77 (s, 3H) , 3.21 -3.05 (m, 1H) , 2.99 -2.84 (m, 2H) , 2.63 -2.57 (m, 1H) , 1.97 -1.81 (m, 2H) , 1.69 -1.60 (m, 1H) , 1.60 -1.52 (m, 1H) , 1.07-0.97 (m, 6H) .
Example 37
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -1- (4-fluorophenyl) -2-oxo-1, 2-dihydropyridine-3-carboxamide (Compound 60)
To a solution of compound 60-1 (30 mg, 76.63 μmol, 1 eq) in Py (2 mL) was added compound 60-2 (20 mg, 85.77 μmol, 1.12 eq) and EDCI (30 mg, 156.49 μmol, 2.04 eq) , then the mixture was stirred at 25℃ for 2 hrs. An aliquot was taken from the reaction mixture and added to MeOH, LCMS showed compound 60-1 was consumed and desired MS was detected. Dilute the reaction mixture with H
2O (5mL) and extracte it with EtOAc (10 mL *2) . Wash the combined organic layers with H
2O (20 mL *3) followed by NH
4Cl (sat., 50 mL) , dry it over Na
2SO
4, filter and concentrate it under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: Phenomenex luna C18 150*25mm*10um; mobile phase: [water (FA) -ACN] ; B%: 48%-78%, 10min) , then concentrated to remove MeCN, and adjust to pH = 8 with NaHCO
3 (sat. ) , then extracted with EtOAc (20 ml*2) , dried it over Na
2SO
4, filtered and concentrated it under reduced pressure to get desired Compound 60 (20 mg, 32.87 μmol, 42.89%yield, 99.7%purity) as confirmed by H NMR.
H NMR: (400 MHz, DMSO-d6) δ 12.04 (s, 1H) , 8.88 -8.53 (m, 1H) , 8.20 -8.05 (m, 1H) , 7.93 -7.77 (m, 2H) , 7.73 -7.57 (m, 2H) , 7.55 -7.38 (m, 4H) , 7.23 (s, 1H) , 6.77 -6.68 (m, 2H) , 4.68 -4.57 (m, 1H) , 4.40 -4.26 (m, 2H) , 4.17 -4.05 (m, 1H) , 3.77 (s, 3H) , 3.22 -3.05 (m, 1H) , 2.97 -2.80 (m, 2H) , 2.65-2.57 (m, 1H) , 1.97 -1.81 (m, 2H) , 1.74 -1.48 (m, 2H) , 1.08 -0.86 (m, 6H) .
Example 38
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -2-oxo-2H- [1, 2'-bipyridine] -3-carboxamide (Compound 61)
Step 1. methyl 2-oxo-2H- [1, 2'-bipyridine] -3-carboxylate
To a solution of compound 61-1 (500 mg, 3.24 mmol, 1.00 eq) in THF (4.00 mL) and DMF (1.00 mL) was added compound 61-2 (305 mg, 3.24 mmol, 1.00 eq) . And the mixture was stirred at 20℃ for 2 hrs. Then EDCI (746 mg, 3.89 mmol, 1.20 eq) and DMAP (198 mg, 1.62 mmol, 0.500 eq) were added to the mixture, and the mixture was stirred at 20℃ for 14 hrs. LC-MS showed the desired mass was detected. The mixture was quenched with 4.00 M HCl (10.0 mL) at 20℃ and stir for 30 min. Then the mixture was adjusted by Na
2CO
3 until pH was around 9. The aqueous part was extracted with EtOAc (100 mL *8) . The combined organic layers were dried over anhydrous Na
2SO
4, then filtered and concentrated under reduced pressure to give a residue. The residue (DCM: MeOH = 10: 1, Rf (P1) = 0.400) was purified by column chromatography (SiO
2, DCM: MeOH = 100: 0 to 100: 1) . Compound 61-3 (500 mg, 2.17 mmol, 66.9%yield) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 8.58 -8.57 (m, 1H) , 8.25 -8.23 (m, 1H) , 8.13 -8.11 (m, 1H) , 7.98 -7.96 (m, 1H) , 7.87 -7.83 (m, 1H) , 7.37 -7.27 (m, 1H) , 6.41 -6.37 (m, 1H) , 3.92 (s, 3H) .
Step 2. 2-oxo-2H- [1, 2'-bipyridine] -3-carboxylic acid
To a solution of compound 61-3 (500 mg, 2.17 mmol, 1.00 eq) in MeOH (3.00 mL) was added NaOH (2.00 M, 2.88 mL, 2.65 eq) at 0℃. The mixture was stirred at 20 ℃ for 10 min. LC-MS showed the desired mass was detected. The mixture was concentrated under reduced pressure to remove MeOH. Then the mixture was dissolved into water (50.0 mL) and adjusted by 2.00 M HCl until pH was around 2. Then the mixture was filtered to give the residue. The mixture was dissolved into MeOH (50 mL) and concentrated under reduced pressure to give the product. Compound 61-4 (320 mg, 1.48 mmol, 68.1%yield) was obtained as a yellow solid.
Step 3. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -2-oxo-2H- [1, 2'-bipyridine] -3-carboxamide
To a solution of compound 61-5 (25.0 mg, 63.8 μmol, 1.00 eq) and compound 61-4 (12.4 mg, 57.4 μmol, 0.900 eq) in DCM (2.00 mL) was added HATU (36.4 mg, 95.7 μmol, 1.50 eq) and DIEA (41.2 mg, 319 μmol, 55.6 μL, 5.00 eq) . Then the mixture was stirred at 20℃ for 1 hr. LC-MS showed the desired mass was detected. The reaction mixture was quenched by sat. aq. NaHCO
3 (20.0 mL) , and then extracted with DCM (30.0 mL *3) . The organic layers were washed by sat. aq. NaHCO
3 (40.0 mL *2) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1, Rf (P1) = 0.500) . Compound 61 (27.5 mg, 45.3 μmol, 70.9%yield, 97.0%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 11.94 (s, 1H) , 8.80 -8.77 (m, 1H) , 8.68 -8.67 (m, 1H) , 8.06 -8.04 (m, 1H) , 7.99 -7.95 (m, 1H) , 7.88 -7.86 (m, 3H) , 7.51 -7.46 (m, 3H) , 6.97 (s, 1H) , 6.77 (s, 1H) , 6.69 -6.65 (m, 1H) , 4.87 (d, J = 12.0 Hz, 1H) , 4.11 (d, J = 12.4 Hz, 1H) , 3.85 (s, 3H) , 3.21 -3.14 (m, 1H) , 2.93 -2.83 (m, 2H) , 2.69 -2.63 (m, 1H) , 2.05 -1.98 (m, 2H) , 1.78 -1.72 (m, 2H) , 1.19 -1.15 (m, 6H) .
LC-MS: (M+H)
+: 590.3
HPLC: purity: 97.0% (215 nm)
Example 39
8- ( (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) amino) -2- (4-fluorophenyl) -2, 7-naphthyridin-1 (2H) -one (Compound 62)
Step 1. 1- (4-fluorophenyl) -4-methyl-2-oxo-1, 2-dihydropyridine-3-carbonitrile
To a solution of compound 62-1 (5.00 g, 37.2 mmol, 1.00 eq) and compound 62-2 (10.4 g, 74.5 mmol, 2.00 eq) in DCM (50.0 mL) was added Cu (OAc)
2 (13.5 g, 74.5 mmol, 2.00 eq) and pyridine (11.7 g, 149 mmol, 12.0 mL, 4.00 eq) . The mixture was stirred at 25℃ for 12 hrs. LC-MS showed desired mass detected. The reaction mixture was filtered, the filtrate was concentrated to give a residue. The residue (DCM: MeOH = 10: 1, R
f (P1) = 0.400) was purified by column chromatography (SiO
2, DCM: MeOH = 100: 1 to 100: 10) . Compound 62-3 (5.50 g, 24.1 mmol, 64.6%yield) was obtained as a yellow solid. The structure was confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 7.46 -7.44 (m, 1H) , 7.37 -7.33 (m, 2H) , 7.21 -7.19 (m, 2H) , 6.26 -6.25 (m, 1H) , 2.52 (s, 3H) .
Step 2. (E) -4- (2- (dimethylamino) vinyl) -1- (4-fluorophenyl) -2-oxo-1, 2-dihydropyridine-3-carbonitrile
To a solution of compound 62-3 (2.00 g, 8.76 mmol, 1.00 eq) in DMF (20.0 mL) was added DMF-DMA (1.08 g, 9.06 mmol, 1.20 mL, 1.03 eq) . Then the mixture was stirred at 90℃ for 2 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (100 mL) , and then extracted with EtOAc (30.0 mL *5) . The combined organic layers were washed by water (30.0 mL *4) and brine (30.0 mL *4) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The crude product was triturated with DCM: MTBE = 1: 10 (110 mL) at 20℃ for 30 min. The mixture was filtered and cake was concentrated under reduced pressure to give a residue. Compound 62-4 (2.10 g, 7.41 mmol, 84.5%yield) was obtained as a yellow solid.
Step 3. 2- (4-fluorophenyl) -2, 7-naphthyridine-1, 8 (2H, 7H) -dione
The mixture of compound 62-4 (1.60 g, 5.65 mmol, 1.00 eq) in H
2SO
4 (64.4 g, 643 mmol, 35.0 mL, 98.0%purity, 113 eq) was stirred at 110℃ for 2 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The mixture was poured into ice water (100 mL) and extracted with DCM (50.0 mL *3) . Then the aqueous phase was adjusted pH to 7 by sat. NaHCO
3 and extracted with DCM (100 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 62-5 (1.10 g, 4.29 mmol, 76.0%yield) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 11.39 (s, 1H) , 7.70 -7.69 (m, 1H) , 7.47 -7.44 (m, 3H) , 7.37 -7.32 (m, 2H) , 6.39 -6.29 (m, 2H) .
Step 4. 8-chloro-2- (4-fluorophenyl) -2, 7-naphthyridin-1 (2H) -one
The mixture of compound 62-5 (500 mg, 1.95 mmol, 1.00 eq) in POCl
3 (41.2 g, 269 mmol, 25.0 mL, 137 eq) was stirred at 110℃ for 1 hr. LC-MS showed the desired mass was detected. The mixture was filtered and the cake was concentrated under reduced pressure to give a residue. And the filter was concentrated under reduced pressure to give a residue. The residue was adjusted pH to 9 by sat. aq NaHCO
3 and extracted with DCM 150 mL (50.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 62-6 (520 mg, 1.89 mmol, 97.0%yield) was obtained as a yellow solid.
Step 5. 2- (4-fluorophenyl) -8- ( (4- (6- (1-isobutyrylpiperidin-4-yl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) amino) -2, 7-naphthyridin-1 (2H) -one
To a solution of compound 62-6 (66.2 mg, 241 μmol, 1.20 eq) and compound 62-7 (100 mg, 200 μmol, 1.00 eq) in dioxane (6.00 mL) was added t-BuONa (23.1 mg, 241 μmol, 1.20 eq) , DPPP (16.5 mg, 40.1 umol, 0.200 eq) and Pd
2 (dba)
3 (18.4 mg, 20.1 μmol, 0.100 eq) . The mixture was stirred at 100℃ for 4 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 62-8 (70.0 mg, 95.1 μmol, 47.3%yield) was obtained as a yellow solid.
Step 6. 8- ( (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) amino) -2- (4-fluorophenyl) -2, 7-naphthyridin-1 (2H) -one
To a solution of compound 62-8 (70.0 mg, 95.1 μmol, 1.00 eq) in DCM (5.00 mL) was added TFA (7.70 g, 67.5 mmol, 5.00 mL, 709 eq) . Then the mixture was stirred at 50℃ for 10 hrs. LC-MS showed the desired mass was detected. The reaction mixture was adjusted pH to 9 by sat. aq NaHCO
3 and extracted with DCM 150 mL (50.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 15: 1, R
f (P1) = 0.400) . Compound 62 (24.5 mg, 38.8 umol, 40.8%yield, 97.6%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 11.76 (s, 1H) , 8.33 (d, J = 5.2 Hz, 1H) , 7.91 -7.89 (m, 2H) , 7.44 -7.41 (m, 4H) , 7.26 -7.24 (m, 4H) , 7.09 -7.08 (m, 1H) , 6.74 (d, J = 5.2 Hz, 1H) , 6.49 -6.47 (m, 2H) , 5.09 (s, 2H) , 4.83 (d, J = 13.2 Hz, 1H) , 4.10 (d, J = 14.4 Hz, 1H) , 3.28 -3.21 (m, 1H) , 3.12 -3.06 (m, 1H) , 2.89 -2.83 (m, 1H) , 2.78 -2.72 (m, 1H) , 2.16 -2.10 (m, 2H) , 1.74 -1.65 (m, 2H) , 1.17 -1.16 (m, 6H) .
LC-MS: (M+H)
+: 616.2
HPLC: purity: 97.6% (220 nm)
Example 40
8- ( (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) amino) -2- (pyridin-2-yl) -2, 7-naphthyridin-1 (2H) -one (Compound 63)
Step 1. 4-methyl-2-oxo-2H- [1, 2'-bipyridine] -3-carbonitrile
To a solution of compound 63-1 (4.00 g, 29.8 mmol, 1.00 eq) and compound 63-2 (9.42 g, 59.6 mmol, 5.68 mL, 2.00 eq) in toluene (130 mL) was added K
3PO
4 (12.6 g, 59.6 mmol, 2.00 eq) , CuI (5.68 g, 29.8 mmol, 1.00 eq) and DMAEA (1.05 g, 11.9 mmol, 1.30 mL, 0.400 eq) . The mixture was stirred at 120℃ for 12 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The mixture was filtered. Then the mixture was quenched by water (200 mL) , and then extracted with EtOAc (200 mL *2) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue (petroleum ether: Ethyl acetate = 0: 1, R
f (P1) = 0.500) was purified by column chromatography (SiO
2, Petroleum ether: Ethyl acetate = 0: 1 to 0: 1) . Compound 63-3 (0.600 g, 2.84 mmol, 9.53%yield) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, CDCl
3) δ 8.57 -8.56 (m, 1H) , 8.13 (d, J = 7.2 Hz, 1H) , 8.03 -8.01 (m, 1H) , 7.90 -7.85 (m, 1H) , 7.39 -7.36 (m, 1H) , 6.31 (d, J = 7.2 Hz, 1H) , 2.52 (s, 3H) .
Step 2. (E) -4- (2- (dimethylamino) vinyl) -2-oxo-2H- [1, 2'-bipyridine] -3-carbonitrile
To a solution of compound 63-3 (540 mg, 2.56 mmol, 1.00 eq) in DMF (10.0 mL) was added DMF-DMA (335 mg, 2.81 mmol, 373 μL, 1.10 eq) . Then the mixture was stirred at 90℃ for 2 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The mixture was concentrated under reduced pressure to give a residue. Crude 63-4 (700 mg) was obtained as a yellow solid.
Step 3. 2- (pyridin-2-yl) -2, 7-naphthyridine-1, 8 (2H, 7H) -dione
The mixture of compound 63-4 (700 mg, 2.63 mmol, 1.00 eq) in H
2SO
4 (18.4 g, 183 mmol, 10.0 mL, 98.0%purity, 69.9 eq) was stirred at 110℃ for 2 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The mixture was poured into ice water (100 mL) and extracted with DCM (50.0 mL *3) . Then the aqueous phase was adjusted pH to 7 by sat. NaHCO
3 and extracted with DCM (100 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Then the aqueous phase was concentrated under reduced pressure to give a residue. And the residue was triturated with DCM: MeOH = 3: 1 (400 mL) at 20℃ for 30 min. Then the mixture was filtered and filter was concentrated under reduced pressure to give a residue. Compound 63-5 (500 mg, 2.09 mmol, 79.5%yield) was obtained as a yellow solid.
Step 4. 8-chloro-2- (pyridin-2-yl) -2, 7-naphthyridin-1 (2H) -one
The mixture of compound 63-5 (200 mg, 836 μmol, 1.00 eq) in POCl
3 (16.5 g, 107 mmol, 10.0 mL, 128 eq) was stirred at 110℃ for 1 hr. LC-MS showed the desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was adjusted pH to 9 by sat. aq NaHCO
3 and extracted with DCM 150 mL (50.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. Compound 63-6 (210 mg, 814 μmol, 97.4%yield) was obtained as a yellow solid, confirmed by H NMR.
H NMR: (400 MHz, DMSO-d
6) δ 8.64 -8.62 (m, 1H) , 8.51 (d, J = 5.2 Hz, 1H) , 8.05 -7.99 (m, 2H) , 7.80 -7.78 (m, 1H) , 7.68 (d, J = 5.2 Hz, 1H) , 7.54 -7.51 (m, 1H) , 6.78 (d, J = 7.6 Hz, 1H) .
Step 5. 8- ( (4- (6- (1-isobutyrylpiperidin-4-yl) -1- ( (4-methoxybenzyl) amino) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) amino) -2- (pyridin-2-yl) -2, 7-naphthyridin-1 (2H) -one
To a solution of compound 63-6 (77.6 mg, 301 μmol, 1.50 eq) and compound 63-7 (100 mg, 200 μmol, 1.00 eq) in dioxane (3.00 mL) was added t-BuONa (23.1 mg, 241 μmol, 1.20 eq) , DPPP (33.1 mg, 80.3 μmol, 0.400 eq) and Pd
2 (dba)
3 (36.8 mg, 40.1 μmol, 0.200 eq) . The mixture was stirred at 100℃ for 10 hrs under N
2 atmosphere. LC-MS showed the desired mass was detected. The reaction mixture was quenched by water (20.0 mL) , and then extracted with EtOAc (30.0 mL ) . The organic layers were washed by water (10.0 mL *3) and brine (10.0 mL *3) , and the combined aqueous layers were extracted with EtOAc (30.0 mL *3) . The combined organic layers were dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 63-8 (80.0 mg, 111 μmol, 55.3%yield) was obtained as a yellow solid.
Step 6. 8- ( (4- (1-amino-6- (1-isobutyrylpiperidin-4-yl) pyrrolo [1, 2-a] pyrazin-8-yl) phenyl) amino) -2- (pyridin-2-yl) -2, 7-naphthyridin-1 (2H) -one
To a solution of compound 63-8 (40.0 mg, 55.6 μmol, 1.00 eq) in DCM (1.50 mL) was added TFA (2.31 g, 20.2 mmol, 1.50 mL, 364 eq) . Then the mixture was stirred at 50℃ for 12 hrs. LC-MS showed the desired mass was detected. The reaction mixture was concentrated under reduced pressure to give a residue. Then the residue was adjusted pH to 9 by sat. aq NaHCO
3 and extracted with EtOAc 150 mL (50.0 mL *3) . The combined organic layers were washed by sat. aq NaHCO
3 (50.0 mL *2) and water (50.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (DCM: MeOH = 10: 1, R
f (P1) = 0.400) . Compound 63 (18.6 mg, 30.2 μmol, 54.4%yield, 98.1%purity) was obtained as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 11.77 (s, 1H) , 8.65 -8.64 (m, 1H) , 8.34 (d, J = 5.2 Hz, 1H) , 7.95 -7.88 (m, 4H) , 7.80 (d, J = 7.6 Hz, 1H) , 7.45 -7.38 (m, 3H) , 7.25 (d, J = 5.2 Hz, 1H) , 7.07 (d, J = 4.8 Hz, 1H) , 6.75 (d, J = 5.6 Hz, 1H) , 6.53 (d, J = 7.6 Hz, 1H) , 6.48 (s, 1H) , 5.35 (s, 2H) , 4.83 (d, J = 12.8 Hz, 1H) , 4.11 (d, J = 10.4 Hz, 1H) , 3.28 -3.25 (m, 1H) , 3.10 -3.08 (m, 1H) , 2.88 -2.85 (m, 1H) , 2.79 -2.72 (m, 1H) , 2.16 -2.01 (m, 2H) , 1.75 -1.66 (m, 2H) , 1.17 -1.16 (m, 6H) .
LC-MS: (M+H)
+: 599.2
HPLC: purity: 98.1% (215 nm)
Example 41
N- (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) -1-oxo-1, 2-dihydrophthalazin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 64)
Step 1. 3-bromo-2-cyano-5- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) benzoic acid
To a solution of compound 64-1 (500 mg, 1.37 mmol, 1.00 eq) , compound 64-2 (362mg, 1.30 mmol, 0.950 eq) in dioxane (10.0 mL) , H
2O (1.00 mL) was added Na
2CO
3 (2 M, 1.37 mL, 2.00 eq) , Pd (PPh
3)
4 (158 mg, 136 μmol, 0.100 eq) , the mixture was stirred at 90℃ for 3 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with water (10.0 mL) , extracted with EtOAc (10.0 mL *3) , the aqueous phase was adjusted the pH = 2 by 1M HCl at 0℃, extracted with DCM (10.0 mL *3) , the combined organic layer was washed with brine (20.0 mL) , dried over Na
2SO
4, filtered and concentrated to remove solvent to get the desired product compound 64-3 (500 mg, 1.33 mmol, 97.0%yield) as yellow solid.
Step 2. 2-cyano-5- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) -4'-nitro- [1, 1'-biphenyl] -3-carboxylic acid
To a solution of compound 64-3 (500 mg, 1.33 mmol, 1.00 eq) , compound 64-4 (265 mg, 1.59 mmol, 1.20 eq) in dioxane (10.0 mL) was added K
3PO
4 (2 M, 1.99 mL, 3.00 eq) , XPHOS-PD-G2 (104 mg, 132 μmol, 0.100 eq) , the mixture was stirred at 90 ℃ for 12 hrs under N2 atmosphere. LC-MS showed the desired mass detected. The mixture was diluted with water (20.0 mL) , extracted with EtOAc (20.0 mL *2) , the organic layer was discard and the aqueous phase was adjusted the pH = 2 by 1M HCl at 0℃, extracted with DCM (20.0 mL *3) , the combined organic layer was washed with brine (40.0 mL) , dried over Na
2SO
4, filtered and concentrated to get the desired product compound 64-5 (350 mg, 834 μmol, 62.9%yield) as yellow solid.
Step 3. methyl 2-cyano-5- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) -4'-nitro- [1, 1'-biphenyl] -3-carboxylate
To a solution of compound 64-5 (350 mg, 834 μmol, 1.00 eq) in DMF (5.00 mL) was added Ag
2O (386 mg, 1.67 mmol, 2.00 eq) , MeI (177 mg, 1.25 mmol, 77.9 μL, 1.50 eq) , the mixture was stirred at 25 ℃ for 3 hrs. LC-MS showed compound 64-5 was consumed and the desired mass detected. The mixture was filtered and diluted with water (20.0 mL) , extracted with EtOAc (20.0 mL *3) , the combined organic layer was washed with water (30.0 mL *2) , brine (30.0 mL) , dried over Na
2SO
4, filtered and concentrated to remove solvent to get the desired product compound 64-6 (340 mg, 784 μmol, 94.0%yield) as yellow solid.
Step 4. methyl 4'-amino-2-cyano-5- (1-isobutyrylpiperidin-4-yl) - [1, 1'-biphenyl] -3-carboxylate
To a solution of compound 64-6 (340 mg, 784umol, 1.00 eq) in THF (5.00 mL) was added Pd/C (100 mg, 10%purity) , then degassed and purged with H
2 three times, the mixture was stirred at 25 ℃ for 1 h (15 psi) . LCMS showed the desired mass detected. The mixture was filtered and concentrated to remove solvent. The mixture was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.6) to get the desired product compound 64-7 (180 mg, 443.91 μmol, 56.59%yield) as yellow solid.
Step 5. 4-amino-5- (4-aminophenyl) -7- (1-isobutyrylpiperidin-4-yl) phthalazin-1(2H) -one
To a solution of compound 64-7 (100 mg, 246 μmol, 1.00 eq) in MeOH (2.00 mL) was added N
2H
4
. H
2O (412mg, 8.07 mmol, 400 μL, 98.0%purity, 32.7 eq) , the mixture was stirred at 50 ℃ for 2 hrs. LC-MS showed the desired mass detected. The mixture was concentrated to remove solvent. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.25) to get the desired product compound 64-8 (50.0 mg, 123 μmol, 50.0%yield) as yellow solid.
H NMR: (400 MHz, CDCl
3) δ 10.87 (s, 1H) , 8.30 (s, 1H) , 7.43 -7.42 (m, 1H) , 7.17 -7.14 (m, 2H) , 6.79 -6.73 (m, 2H) , 4.91 -4.82 (m, 3H) , 4.08 (brs, 1H) , 3.91 (brs, 2H) , 3.15 (t, J = 13.2 Hz, 1H) , 2.96 -2.90 (d, 1H) , 2.86 -2.81 (m, 1H) , 2.66 -2.60 (m, 1H) , 2.00 -1.94 (m, 2H) , 1.73 -1.66 (m, 2H) , 1.17 -1.13 (m, 6H) .
Step 6. N- (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) -1-oxo-1, 2-dihydrophthalazin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide
To a solution of compound 64-8 (50.0 mg, 123 μmol, 1.00 eq) , compound 64-9 (30.5 mg, 111 μmol, 0.900 eq) in Py (2.00 mL) was added EDCI (47.3 mg, 247 μmol, 2.00 eq) , the mixture was stirred at 25 ℃ for 2 hrs. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (10.0 mL) and water (10.0 mL) , extracted with DCM (20.0 mL *3) , the combined organic layer was washed with brine (40.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.55) to get the desired product Compound 64 (12.36 mg, 17.3 μmol, 14.0%yield, 93.0%purity) as confirmed by H NMR, LC-MS and HPLC.
H NMR: (400 MHz, CDCl
3) δ 10.91 (s, 1H) , 9.81 (s, 1H) , 8.75 -8.71 (m, 2H) , 8.36 (d, J = 2.0 Hz, 1H) , 8.01 -7.97 (m, 1H) , 7.76 (d, J = 8.0 Hz, 2H) , 7.52 -7.49 (m, 1H) , 7.44 (d, J = 2.0 Hz, 1H) , 7.41 -7.34 (m, 3H) , 5.02 -4.95 (m, 1H) , 4.86 -4.82 (m, 1H) , 4.23 (s, 2H) , 4.12 -4.08 (m, 1H) , 3.18 -3.12 (m, 1H) , 2.98 -2.91 (m, 1H) , 2.87 -2.80 (m, 1H) , 2.66 -2.60 (m, 1H) , 2.02 -1.95 (m, 2H) , 1.73 -1.70 (m, 2H) , 1.51 (d, J = 6.8 Hz, 6H) , 1.17 -1.13 (m, 6H) .
LC-MS: (M+H)
+: 663.4
HPLC: purity: 93.7% (220 nm)
Example 42
N- (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) quinazolin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (Compound 65)
Step 1: 4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) -1, 2, 3, 6-tetrahydropyridine 2, 2, 2-trifluoroacetate
To a solution of tert-butyl4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) -3, 6–dihydropyridine–1 (2H) -carboxylate (1.00 g, 3.23 mmol) in DCM (10 mL) was added trifluoroacetic acid (3 mL) . The resulting mixture was stirred at 25℃ for 2 hours under N
2 atmosphere. The reaction was monitored by LC-MS. After the reaction was completed, the reaction mixture was concentrated in vacuum to give 4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) -1, 2, 3, 6-tetrahydropyridine 2, 2, 2-tri -fluoroacetate as yellow solid (1.04 g, 100%yield, crude) .
LC-MS: (ESI) [M+H]
+ = 210.1, t
R= 0.78 min
Step 2: 2-methyl-1- (4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) -3, 6-dihydropyridin-1 (2H) -yl) propan-1-one
To a solution of 4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) -1, 2, 3, 6-tetra-hydropyridine 2, 2, 2-trifluoroacetate (1.04 g, 3.23 mmol) in DCM (10 mL) was added triethylamine (979 mg, 9.69 mmol) and isobutyryl chloride (342 mg, 3.23 mmol) at 0 ℃ dropwisely. The resulting mixture was stirred at 25 ℃ for 12 hours under N
2 atmosphere. The reaction was monitored by LC-MS. After the reaction was completed, the reaction mixture was concentrated in vacuum and purified by silica gel column chromatography (PE: EA=1: 1) to obtain 2-methyl-1- (4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) -3, 6-dihydropyridin-1 (2H) -yl) propan-1-one (200 mg, 0.71 mmol, 22%yield) as a yellow oil.
LC-MS: (ESI) [M+H]
+ = 280.2, t
R = 1.24 min
Step 3: 2-amino-4-bromo-6-fluorobenzonitrile
To a solution of 4-bromo-2, 6-difluorobenzonitrile (500 mg, 2.29 mmol) in isopropanol (5 mL) was added NH
3·H
2O (5 mL) at room temperature. The resulting mixture was stirred at 85 ℃ for 12 hours under N
2 atmosphere. The reaction was monitored by TLC. After the reaction was completed, the reaction solution was poured into water (10 mL) , and extracted with ethyl acetate (10 mL × 3) . The combined organic layers were washed with saturated aqueous brine (10 mL × 3) , dried over Na
2SO
4, filtered and concentrated in vacuum. The residue was purified by silica gel column chromatography (PE : EA = 2 : 1) to obtain 2-amino-4-bromo-6-fluorobenzonitrile (400 mg, 1.86 mmol, 81%yield) as a yellow solid.
1H-NMR (400 MHz, DMSO-d6) : δ 6.84 (s, 1H) , 6.81-6.70 (m, 3H) .
Step 4: 4-bromo-2-fluoro-6-iodobenzonitrile
To a solution of 2-amino-4-bromo-6-fluorobenzonitrile (10.0 g, 46.5 mmol) in acetonitrile (100 mL) was added KI (15.4 g, 93.0 mmol) , CuI (884 mg, 4.65 mmol) and tert-butyl nitrite (9.5 g, 93.0 mmol) at 0 ℃. The mixture was heated to 70 ℃and stirred at 70 ℃ for 1 hour. The reaction was monitored by TLC. After the reaction was completed, the reaction mixture was concentrated in vacuum and then purified by silica gel column chromatography (PE : EA = 4 : 1) to obtain 4-bromo-2-fluoro-6-iodobenzonitrile (6.00 g, 18.4 mmol, 40 %yield) as a yellow solid.
Step 5: 7-bromo-5-iodoquinazolin-4-amine
To a solution of formamidine acetate (7.67 g, 73.6 mmol) in DMF (50 mL) was slowly added sodium hydride (5.88 g, 147 mmol, 60%content was dispersed in mineral oil) and 4-bromo-2-fluoro-6-iodobenzonitrile (6.00 g, 18.4 mmol) . The resulting mixture was stirred at 120 ℃ for 1 hour under N
2 atmosphere. The reaction was monitored by LC-MS. After the reaction was completed, the mixture was poured into water (100 mL) and filtered to obtain 7-bromo-5-iodoquinazolin-4-amine (1.00 g, 2.85 mmol, 15%yield) as a yellow solid.
LC-MS: (ESI) [M+H]
+ = 351.9, t
R = 0.83 min
Step 6: tert-butyl (4- (4-amino-7-bromoquinazolin-5-yl) phenyl) carbamate
To a mixture of 7-bromo-5-iodoquinazolin-4-amine (1.00 g, 2.85 mmol) , tert-butyl (4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) phenyl) carbamate (1.09 g, 3, 42 mmol) in toluene (5 mL) and water (1 mL) was added BrettPhos (153 mg, 0.285 mmol) , BrettPhos Pd G3 (258 mg, 0.285 mmol) and K
2CO
3 (1.18 g, 8.55 mmol) . The mixture was stirred in a microwave at 120 ℃ for 2 hours. The reaction was monitored by LC-MS. After the reaction was completed, the reaction was concentrated in vacuum, and the residue was purified by silica gel column chromatography (PE: EA=4: 1) to obtain tert-butyl (4- (4-amino-7-bromoquinazolin-5-yl) phenyl) carbamate (40.0 mg, 0.097 mmol, 3.3 %yield) as a yellow solid.
LC-MS: (ESI) [M+H]
+ = 415.1, t
R = 1.11 min
Step 7: tert-butyl (4- (4-amino-7- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) quinazolin-5-yl) phenyl) carbamate
To a mixture of tert-butyl (4- (4-amino-7-bromoquinazolin-5-yl) phenyl) carbamate (40.0 mg, 0.097 mmol) in 1, 4-dioxane (3mL) and water (0.5mL) was added 2-methyl-1- (4- (4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) -3, 6- dihydropyridin-1 (2H) -yl) propan-1-one (54.1 mg, 0.194 mmol) , cataCXium A-Pd-G2 (6.68 mg, 0.010 mmol) , K
3PO
4 (61.7 mg, 0.291 mmol) under N
2 atmosphere. The resulting mixture was stirred at 90℃ for 12 hours. After the reaction was completed, the mixture was filtered and then concentrated in vacuum. The residue was purified by silica gel column chromatography (DCM: MeOH=20: 1) to obtain tert-butyl (4- (4-amino -7- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) quinazolin-5-yl) phenyl) carbamate (40.0 mg, 0.082 mmol , 85%yield) as a yellow solid.
LC-MS: (ESI) [M+H] + = 488.2, tR = 1.12 min
Step 8: tert-butyl (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) quinazolin-5-yl) phenyl) carbamate
To a solution of tert-butyl (4- (4-amino-7- (1-isobutyryl-1, 2, 3, 6-tetrahydropyridin-4-yl) quinazolin-5-yl) phenyl) carbamate (40.0 mg, 0.082 mmol) in tetrahydrofuran (2 mL) was added Pd/C (5.00 mg, palladium content 10%) . The mixture was degassed with H
2 three times and then stirred at 25 ℃ for 1 hour under H
2 atmosphere. The reaction was monitored by LC-MS. After the reaction was completed, the mixture was filtered and concentrated in vacuum to give tert-butyl (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) -quinazolin-5-yl) phenyl) carbamate (40.2 mg, 0.082 mmol, crude) as a yellow solid.
LC-MS: (ESI) [M+H]
+ = 490.3, t
R = 1.11 min.
Step 9: 1- (4- (4-amino-5- (4-aminophenyl) quinazolin-7-yl) piperidin-1-yl) -2-methylpropan-1-one 2, 2, 2-trifluoroacetate
To a solution of tert-butyl (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) quinazolin-5-yl) phenyl) carbamate (40.2 mg, 0.082 mmol) in dichloromethane (2 mL) was added trifluoroacetic acid (1 mL) dropwisely. The mixture was stirred at 25℃for 2 hours under N
2 atmosphere. The reaction was monitored by LC-MS. After the reaction was completed, the mixture was directly concentrated in vacuum to give 1- (4- (4-amino-5- (4-aminophenyl) quinazolin-7-yl) piperidin-1-yl) -2-methylpropan-1-one 2, 2, 2-trifluoroacetate (41.2 mg, 0.082 mmol, crude) as a yellow solid.
LC-MS: (ESI) [M+H]
+ = 390.2, t
R = 0.90 min
Step 10: N- (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) quinazo lin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide 2, 2, 2-trifluoroacetate
To a solution of 1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetra hydropyrimidine-5-carboxylic acid (33.8 mg, 0.123 mmol) in DCM (2 mL) was added HATU (46.7 mg, 0.123 mmol) and DIEA (47.6 mg, 0.369 mmol) . The mixture was stirred at 25℃ for 0.5 hours under N
2 atmosphere. Then 1- (4- (4-amino-5- (4-aminophenyl) quinazolin-7-yl) piperidin-1-yl) -2-methylpropan-1-one 2, 2, 2-trifluoroacetate (41.2 mg, 0.082 mmol) was added to the above mixture. The mixture was continued to stirred at 25 ℃ for 2 hours under N
2 atmosphere. The reaction was monitored by LC-MS. After the reaction was completed, the reaction solution was concentrated in vacuum, and the residue was purified by reverse-phase pre-HPLC (eluted with CH
3CN and 0.1%TFA in H
2O) to obtain N- (4- (4-amino-7- (1-isobutyrylpiperidin-4-yl) quinazolin-5-yl) phenyl) -1-isopropyl-2, 4-dioxo-3- (pyridin-2-yl) -1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide 2, 2, 2-trifluoroacetate. (1.20 mg, 1.5 μmol, 1.7 %yield) .
LC-MS: [ESI] [M+H]
+ = 647.3, t
R = 0.98 min.
1H-NMR (400 MHz, CD
3OD) : δ 8.78 (s, 1H) , 8.71-8.56 (m, 2H) , 8.11 (td, J =7.6, 2.0 Hz, 1H) , 7.88 (d, J = 8.4 Hz, 2H) , 7.69-7.59 (m, 2H) , 7.56 (d, J = 8.0 Hz, 1H) , 7.54 (d, J = 1.6 Hz, 1H) , 7.49 (d, J = 8.8 Hz, 2H) , 4.79-4.68 (m, 2H) , 4.31-4.11 (m, 1H) , 3.73-3.51 (m, 1H) , 3.01 (td, J = 13.2, 6.4 Hz, 1H) , 2.87-2.63 (m, 1H) , 2.30-2.17 (m, 1H) , 2.07-1.94 (m, 2H) , 1.84-1.61 (m, 2H) , 1.51 (d, J = 6.8 Hz, 6H) , 1.14-1.08 (m, 6H) .
Example 43
N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -5'-fluoro-2-oxo-2H- [1, 2'-bipyridine] -3-carboxamide (Compound 66)
Step 1. methyl 5'-fluoro-2-oxo-2H- [1, 2'-bipyridine] -3-carboxylate
To a solution of compound 66-1 (1.00 g, 6.49 mmol, 1.00 eq) in THF (10.0 mL) and DMF (2.50 mL) was added compound 66-2 (727 mg, 6.49 mmol, 1.00 eq) , the mixture was stirred at 25℃ for 2 hrs, then EDCI (1.87 g, 9.73 mmol, 1.50 eq) , DMAP (396 mg, 3.24 mmol, 0.500 eq) was added, the mixture was stirred at 25℃ for 10 hrs. LC-MS showed compound 66-1 was consumed and the desired mass detected. The mixture was diluted with 4M HCl (10.0 mL) and stirred at 25℃ for 0.5 h, the mixture was filtered and the filter cake was the desired product compound 66-3 (660 mg, 2.66 mmol, 40.9%yield) as yellow solid.
Step 2. 5'-fluoro-2-oxo-2H- [1, 2'-bipyridine] -3-carboxylic acid
To a solution of compound 66-3 (660 mg, 2.66 mmol, 1.00 eq) in THF (10.0 mL) , MeOH (4.00 mL) was added a solution of LiOH
. H
2O (334 mg, 7.98 mmol, 3.00 eq) in H
2O (2.00 mL) at 0℃, the mixture was stirred at 25℃ for 3 hrs. LC-MS showed compound 66-3 was consumed and the desired mass detected. The mixture was concentrated to remove solvent and diluted with water (20.0 mL) , extracted with EtOAc (20.0 mL *2) , the organic layer was discard and the aqueous phase was adjusted the pH = 2 by 1M HCl at 0℃, extracted with DCM (30.0 mL *3) , the combined organic layer was washed with brine (50.0 mL) , dried over Na
2SO
4, filtered and concentrated to remove solvent to get the desired product compound 66-4 (500 mg, 2.14 mmol, 80.3%yield) as yellow solid.
Step 3. N- (4- (3-amino-6- (1-isobutyrylpiperidin-4-yl) -1-methyl-1H-indazol-4-yl) phenyl) -5'-fluoro-2-oxo-2H- [1, 2'-bipyridine] -3-carboxamide
To a solution of compound 66-5 (25.0 mg, 63.8 μmol, 1.00 eq) , compound 66-5 (13.4 mg, 57.4 μmol, 0.900 eq) in DCM (2.00 mL) was added DIEA (41.2 mg, 319 μmol, 55.6 μL, 5.00 eq) , HATU (36.4 mg, 95.8 μmol, 1.50 eq) , the mixture was stirred at 25℃ for 1 h. LC-MS showed the desired mass detected. The reaction mixture was diluted with sat. aq. NaHCO
3 (3.00 mL) and water (3.00 mL) , extracted with DCM (5.00 mL *3) , the combined organic layer was washed with brine (10.0 mL) , dried over Na
2SO
4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by Prep-TLC (SiO
2, DCM: MeOH = 10: 1, Plate 1, DCM: MeOH = 10: 1, R
f = 0.55) to get the desired product Compound 66 (22.73 mg, 35.16 μmol, 55.06%yield, 94%purity) as confirmed by H NMR, LC-MS, and HPLC.
H NMR: (400 MHz, CDCl
3) δ 11.86 (s, 1H) , 8.79 –8.76 (m, 1H) , 8.49 (d, J = 2.8 Hz, 1H) , 8.03 –8.00 (m, 1H) , 7.92 –7.89 (m, 1H) , 7.87 –7.85 (m, 2H) , 7.69 –7.65 (m, 1H) , 7.51 –7.49 (m, 2H) , 6.97 (s, 1H) , 6.76 (s, 1H) , 6.67 (t, J = 7.2 Hz, 1H) , 4.86 (d, J = 13.6 Hz, 1H) , 4.10 (d, J = 12.4 Hz, 1H) , 3.87 –3.79 (m, 5H) , 3.17 (t, J =12.8 Hz, 1H) , 2.93 –2.83 (m, 2H) , 2.65 (t, J = 12.0 Hz, 1H) , 2.04 –1.98 (m, 2H) , 1.76 –1.70 (m, 2H) , 1.19 –1.14 (m, 6H) .
LC-MS: (M+H)
+: 608.4
HPLC: purity: 94.0% (220 nm)
Example 44
Biochemical Assays
In vitro kinase assay
All compounds were initially diluted in DMSO to 50 × their final concentrations. 50 μL of the compound dilution was transferred to each well in a 384-well Echo plate (Labcyte PP-0200) . All compounds were transferred to one well in a 384-well Echo plate and serially dilute the compound by 4-fold dilution of 100%DMSO in the next well and so forth for a total of 10 concentrations by precision. 50μl of 100%DMSO were added to two empty wells for no compound control and no enzyme control in the same 384-well Echo plate. Mark the plate as a source plate. 400nL of each well from the 384-well Echo plate were transferred to a 384-well assay plate (Corning 3573) in duplicates. To each well, 10 μL of enzyme solution containing either AXL, MER or TYRO3 (final concentrations 6, 1 or 1.5 nM, respectively) in 1 × Kinase buffer (50 mM HEPES pH 7.5, 10 mM MgCl2, 2 mM DTT and 0.01%Brij-35) and the mix incubated at room temperature for 10 min. To initiate each reaction, 10 μL of peptide solution containing FAM-labelled peptide (final concentrations 3000 nM FAM-P8 for AXL, MER and TYRO3) and ATP (final concentrations 81, 32 or 33 μM for AXL, MER or TYRO3, respectively) in 1 ×Kinase buffer was added to each well. All reactions were incubated at 28℃ for 1 h and then terminated by the addition of 25 μL stop buffer (100 mM HEPES pH 7.5, 50 mM EDTA, 0.2%Coating Reagent #3 and 0.015%Brij-35) .
All samples were then subjected to analysis using Caliper EZ ReaderⅡ (Down stream voltages: -500V, Up stream voltages: -2250V, Base pressure -0.5 PSI, Screen pressure -1.2 PSI) to read conversion values. Conversion values were transformed into %inhibition of kinase activity using the formula: %Inhibition = [ (MA –X) / (MA –MI) ] × 100%where MA = conversion value of DMSO only controls, MI = conversion value of no enzyme controls and X = conversion value at any given compound dose. IC50 values were then calculated by plotting dose-response curves and then using the Xlfit application in Excel software.
The compounds provided herein were found to be inhibitors of one or more of AXL, MER, and TYRO3. In particular, the compounds provided herein are selective for AXL and MER over TYRO3. IC
50 data of exemplary compounds of the present disclosure are provided below in Table 2.
Table 2
Compound No. | AXL IC 50 (nM) | MER IC 50 (nM) | TYRO3 IC 50 (nM) |
1 | 3.5 | 22 | 87 |
2 | 1.4 | 2.4 | 23.3 |
3 | 10.9 | 8.5 | 233.7 |
4 | 3.4 | 19 | 35 |
5 | 2.9 | 18 | 26 |
6 | 2.4 | 15 | 63 |
7 | 0.87 | 1.2 | 11.1 |
8 | 3.29 | 14.0 | 51.6 |
9 | 0.6 | 1.2 | 5.1 |
10 | 4.3 | 28 | 170 |
11 | 1 | 2.3 | 48.5 |
12 | 25 | 32 | 798 |
13 | 29 | 157 | 1103 |
14 | 123 | 456 | 1370 |
15 | 4 | 24 | 67 |
16 | 0.6 | 1.2 | 21 |
17 | 114 | 878 | 9420 |
18 | 4 | 21 | 48 |
19 | 5 | 27 | 56 |
20 | 0.6 | 1.0 | 13.2 |
22 | 1.2 | 0.77 | 15 |
23 | 42 | 183 | 3920 |
24 | 3 | 14 | 366 |
25 | 167.6 | 270.5 | 2290 |
27 | 7 | 6.5 | 203 |
30 | 6.8 | 161 | 939 |
35 | 7 | 9 | 513 |
36 | 1 | 2 | 180 |
37 | 1 | 2 | 51 |
38 | 0.6 | 2.2 | 6.5 |
39 | 14 | 15 | 677 |
40 | 15 | 275 | >2500 |
42 | 2.4 | 3.6 | 17 |
43 | 1 | 3 | 8 |
44 | 1 | 4 | 206 |
45 | 1 | 2 | 68 |
46 | 68.2 | 198.7 | 977 |
47 | 67 | 355 | >2500 |
48 | 3 | 3 | 29 |
49 | 3 | 11 | 12 |
50 | 2 | 7 | 24 |
51 | 2 | 1 | 22 |
52 | 3 | 7 | 25 |
53 | 3 | 2 | 268 |
54 | 7 | 4 | 478 |
55 | 4.3 | 28 | 58 |
56 | 22 | 5.5 | 338 |
57 | 0.4 | 1.8 | 10 |
58 | 1.6 | 16 | 43 |
59 | 0.7 | 5 | 26 |
60 | 1.2 | 6 | 22 |
61 | 7 | 9 | 244 |
62 | 32 | 4 | 203 |
63 | 51 | 37 | >2500 |
64 | 114 | 105 | 695 |
65 | 56 | 47 | 143 |
66 | 3.5 | 4 | 82 |
The foregoing description is considered as illustrative only of the principles of the present disclosure. Further, since numerous modifications and changes will be readily apparent to those skilled in the art, it is not desired to limit the invention to the exact construction and process shown as described above. Accordingly, all suitable modifications and equivalents may be considered to fall within the scope of the invention as defined by the claims that follow.
Claims (109)
- A compound having Formula (I) :or a pharmaceutical acceptable salt thereof,whereinRing A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms;Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2;Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a;R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b;R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R c; ortwo adjacent R a together with the atoms they attached form a cycloalkyl or heterocyclyl;each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; andR c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein Ring A is a 5-membered heteroaryl comprising 1 nitrogen atom.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein Ring A is a 5-membered heteroaryl comprising 2 nitrogen atoms.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein Ring B is phenyl optionally substituted with one or two R 2.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R 2.
- The compound of claim 7, or a pharmaceutically acceptable salt thereof, wherein Ring B is pyridinyl.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein R 1 is cycloalkyl optionally substituted with one or more R b.
- The compound of claim 9, or a pharmaceutically acceptable salt thereof, wherein R 1 is cyclopropyl optionally substituted with one or more R b.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein R 1 is heterocyclyl optionally substituted with one or more R b.
- The compound of any one of claims 9-11, or a pharmaceutically acceptable salt thereof, wherein each R b is independently selected from oxo, alkyl, alkoxyl, aryl, heteroaryl or –C (O) NH-R c, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein R 2 is halogen.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein R 2 is fluoro.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R a.
- The compound of claim 16, or a pharmaceutically acceptable salt thereof, wherein Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R a.
- The compound of claim 17, or a pharmaceutically acceptable salt thereof, wherein Ring C is piperidinyl or octahydroindolizinyl optionally substituted with one or more R a.
- The compound of claim 18, or a pharmaceutically acceptable salt thereof, wherein Ring C is 4-piperidinyl or 7-octahydroindolizinyl optionally substituted with one or more R a.
- The compound of any one of claims 16-19, or a pharmaceutically acceptable salt thereof, wherein each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, and –C (=O) R c.
- The compound of claim 20, or a pharmaceutically acceptable salt thereof, wherein R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein Ring C is aryl optionally substituted with one or more R a.
- The compound of claim 22, or a pharmaceutically acceptable salt thereof, wherein Ring C is phenyl optionally substituted with one or more R a.
- The compound of claim 22 or 23, or a pharmaceutically acceptable salt thereof, wherein each R a is independently selected from the group consisting of halogen, cyano, alkyl, C 3-8 cycloalkyl and 5-6 membered heteroaryl.
- The compound of claim 22 or 23, or a pharmaceutically acceptable salt thereof, wherein two adjacent R a together with the atoms they attached form C 5-8 cycloalkyl or 5-8 membered heterocyclyl.
- A compound having Formula (II) :or a pharmaceutical acceptable salt thereof,whereinRing A is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms;Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2;Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a;W is CH, N, O, or S;R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b;R 2 is halogen, hydroxyl, cyano, amino or alkyl;R 3 is null, hydrogen, oxo, alkyl or haloalkyl;R 4 is NH 2 or haloalkyl;each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R c; ortwo adjacent R a together with the atoms they attached form a cycloalkyl or heterocyclyl;each R b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; andR c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein Ring A is phenyl optionally substituted with one or two R 2.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein Ring A is a 6-membered heteroaryl comprising 1 nitrogen atom.
- The compound of any one of claims 28 to 31, or a pharmaceutically acceptable salt thereof, wherein W is N.
- The compound of any one of claims 28 to 31, or a pharmaceutically acceptable salt thereof, wherein W is O or S.
- The compound of any one of claims 28 to 31, or a pharmaceutically acceptable salt thereof, wherein W is CH.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein Ring B is phenyl.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms.
- The compound of claim 36, or a pharmaceutically acceptable salt thereof, wherein Ring B is pyridinyl.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 1 is cycloalkyl optionally substituted with one or more R b.
- The compound of claim 38, or a pharmaceutically acceptable salt thereof, wherein R 1 is cyclopropyl optionally substituted with one or more R b.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 1 is heterocyclyl optionally substituted with one or more R b.
- The compound of any one of claims 38-40, or a pharmaceutically acceptable salt thereof, wherein each R b is independently selected from oxo, hydroxyl, alkyl, alkoxyl, haloalkyl, haloalkoxyl, aryl, heteroaryl or –C (O) NH-R c, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 2 is halogen.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 2 is fluoro.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R a.
- The compound of claim 45, or a pharmaceutically acceptable salt thereof, wherein Ring C is 6-membered heterocyclyl optionally substituted with one or more R a.
- The compound of claim 46, or a pharmaceutically acceptable salt thereof, wherein Ring C is piperidinyl optionally substituted with one or more R a.
- The compound of claim 47, or a pharmaceutically acceptable salt thereof, wherein Ring C is 4-piperidinyl optionally substituted with one or more R a.
- The compound of any one of claims 45-48, or a pharmaceutically acceptable salt thereof, wherein each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, alkyl, and –C (=O) R c.
- The compound of claim 49, or a pharmaceutically acceptable salt thereof, wherein R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein Ring C is aryl optionally substituted with one or more R a.
- The compound of claim 51, or a pharmaceutically acceptable salt thereof, wherein Ring C is phenyl optionally substituted with one or more R a.
- The compound of claim 51 or 52, or a pharmaceutically acceptable salt thereof, wherein each R a is independently selected from the group consisting of halogen, cyano, alkyl, C 3-8 cycloalkyl and 5-6 membered heteroaryl.
- The compound of claim 51 or 52, or a pharmaceutically acceptable salt thereof, wherein two adjacent R a together with the atoms they attached form C 5-8 cycloalkyl or 5-8 membered heterocyclyl.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 3 is null.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 3 is hydrogen.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 3 is oxo.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 3 is alkyl.
- The compound of claim 56, or a pharmaceutically acceptable salt thereof, wherein R 3 is methyl or ethyl.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 3 is haloalkyl.
- The compound of claim 60, or a pharmaceutically acceptable salt thereof, wherein R 3 is difluoromethyl, trifluoroethyl or difluoroethyl.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 4 is NH 2.
- The compound of claim 28, or a pharmaceutically acceptable salt thereof, wherein R 4 is haloalkyl.
- The compound of claim 63, or a pharmaceutically acceptable salt thereof, wherein R 4 is difluoromethyl.
- A compound having Formula (III) :or a pharmaceutical acceptable salt thereof,whereinRing A is a 5-membered heteroaryl comprising 1 or 2 nitrogen atoms;Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2;Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a;R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b;R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R c; ortwo adjacent R a together with the atoms they attached form a cycloalkyl or heterocyclyl;each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; andR c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- The compound of claim 66, or a pharmaceutically acceptable salt thereof, wherein Ring A is a 5-membered heteroaryl comprising 1 nitrogen atom.
- The compound of claim 66, or a pharmaceutically acceptable salt thereof, wherein Ring A is a 5-membered heteroaryl comprising 2 nitrogen atoms.
- The compound of claim 66, or a pharmaceutically acceptable salt thereof, wherein Ring B is phenyl optionally substituted with one or two R 2.
- The compound of claim 66, or a pharmaceutically acceptable salt thereof, wherein Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R 2.
- The compound of claim 72, or a pharmaceutically acceptable salt thereof, wherein Ring B is pyridinyl.
- The compound of claim 66, or a pharmaceutically acceptable salt thereof, wherein R 1 is heterocyclyl optionally substituted with one or more R b.
- The compound of claim 74, or a pharmaceutically acceptable salt thereof, wherein each R b is independently selected from oxo, alkyl, alkoxyl, aryl, heteroaryl or –C (O) NH-R c, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- The compound of claim 66, or a pharmaceutically acceptable salt thereof, wherein R 2 is halogen.
- The compound of claim 77, or a pharmaceutically acceptable salt thereof, wherein R 2 is fluoro.
- The compound of claim 66, or a pharmaceutically acceptable salt thereof, wherein Ring C is heterocyclyl or aryl, each of which is optionally substituted with one or more R a.
- The compound of claim 79, or a pharmaceutically acceptable salt thereof, wherein Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R a.
- The compound of claim 80, or a pharmaceutically acceptable salt thereof, wherein Ring C is piperidinyl optionally substituted with one or more R a.
- The compound of claim 81, or a pharmaceutically acceptable salt thereof, wherein Ring C is 4-piperidinyl optionally substituted with one or more R a.
- The compound of any one of claims 79-82, or a pharmaceutically acceptable salt thereof, wherein each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo alkyl, and –C (=O) R c.
- The compound of claim 83, or a pharmaceutically acceptable salt thereof, wherein R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- A compound having Formula (IV) :or a pharmaceutical acceptable salt thereof,whereinRing A is a 6-membered heterocyclyl or 6-membered heteroaryl, each of which comprises 1 or 2 nitrogen atoms and is optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl;Ring B is phenyl or 6-membered heteroaryl comprising 1 or 2 nitrogen atoms, each of which is optionally substituted with one or two R 2;Ring C is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R a;R 1 is cycloalkyl, heterocyclyl, aryl or heteroaryl, each of which is optionally substituted with one or more R b;R 2 is halogen, hydroxyl, cyano, amino, alkyl or haloalkyl;each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo, alkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, and –C (=O) R c; ortwo adjacent R a together with the atoms they attached form a cycloalkyl or heterocyclyl;each R b is independently selected from oxo, alkyl, alkoxyl, cycloalkyl, heterocyclyl, aryl, heteroaryl or –C (O) NH-R c, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl; andR c is alkyl, cycloalkyl, heterocyclyl, aryl or heteroaryl, wherein the cycloalkyl, heterocyclyl, aryl, and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, cyano, amino or alkyl.
- The compound of claim 85, or a pharmaceutically acceptable salt thereof, wherein Ring A is a 6-membered heteroaryl comprising 2 nitrogen atoms and optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl.
- The compound of claim 85, or a pharmaceutically acceptable salt thereof, wherein Ring A is a 6-membered heterocyclyl comprising 2 nitrogen atoms and optionally substituted with one or more groups independently selected from hydroxyl, halogen, cyano, oxo, amino or alkyl.
- The compound of claim 85, or a pharmaceutically acceptable salt thereof, wherein Ring B is phenyl optionally substituted with one or two R 2.
- The compound of claim 85, or a pharmaceutically acceptable salt thereof, wherein Ring B is 6-membered heteroaryl comprising 1 or 2 nitrogen atoms optionally substituted with one or two R 2.
- The compound of claim 91, or a pharmaceutically acceptable salt thereof, wherein Ring B is pyridinyl.
- The compound of claim 85, or a pharmaceutically acceptable salt thereof, wherein R 1 is heterocyclyl optionally substituted with one or more R b.
- The compound of claim 93, or a pharmaceutically acceptable salt thereof, wherein each R b is independently selected from oxo, alkyl, alkoxyl, aryl, or heteroaryl, wherein the aryl and heteroaryl are optionally substituted with one or more groups independently selected from halogen, hydroxyl, or cyano.
- The compound of claim 85, or a pharmaceutically acceptable salt thereof, wherein Ring C is heterocyclyl optionally substituted with one or more R a.
- The compound of claim 96, or a pharmaceutically acceptable salt thereof, wherein Ring C is 6-to 10-membered heterocyclyl optionally substituted with one or more R a.
- The compound of claim 97, or a pharmaceutically acceptable salt thereof, wherein Ring C is piperidinyl optionally substituted with one or more R a.
- The compound of claim 98, or a pharmaceutically acceptable salt thereof, wherein Ring C is 4-piperidinyl optionally substituted with one or more R a.
- The compound of any one of claims 96-99, or a pharmaceutically acceptable salt thereof, wherein each R a is independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, amino, oxo alkyl, and –C (=O) R c.
- The compound of claim 100, or a pharmaceutically acceptable salt thereof, wherein R c is alkyl, C 3-8 cycloalkyl, 3-8 membered heterocyclyl or 5-6 membered heteroaryl.
- A pharmaceutical composition comprising the compound of any one of claims 1-102, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.
- A method for inhibiting a TAM kinase, comprising contacting the TAM kinase with the compound of any one of claims 1-102, or a pharmaceutically acceptable salt thereof or the pharmaceutical composition of claim 103.
- A method for inhibiting AXL and MER kinases, comprising contacting the AXL and MER kinases with the compound of any one of claims 1-102, or a pharmaceutically acceptable salt thereof or the pharmaceutical composition of claim 103.
- A method for treating a disease or disorder mediated by TAM in a subject in need thereof, comprising administering an effective amount of the compound of any one of claims 1-102, or a pharmaceutically acceptable salt thereof or the pharmaceutical composition of claim 103 to the subject.
- The method of claim 106, wherein the disease or disorder mediated by TAM is cancer.
- The method of claim 107, wherein the cancer is selected from hepatocellular cancer, bladder cancer, breast cancer, cervical cancer, colorectal cancer, endometrial cancer, gastric cancer, head and neck cancer, kidney cancer, liver cancer, lung cancer, ovarian cancer, prostate cancer, esophageal cancer, gall bladder cancer, pancreatic cancer, thyroid cancer, skin cancer, leukemia, multiple myeloma, chronic lymphocytic lymphoma, adult T cell leukemia, B-cell lymphoma, acute myelogenous leukemia, Hodgkin’s or non-Hodgkin’s lymphoma, Waldenstrom’s Macroglobulinemia, hairy cell lymphoma, Burkett’s lymphoma, glioblastoma, melanoma, and rhabdomyosarcoma.
- The method of claim 108, wherein the cancer is lung cancer, prostate cancer, colon cancer, breast cancer, melanoma, renal cell carcinoma, multiple myeloma, gastric cancer, or rhabdomyosarcoma.
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Citations (6)
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WO2005074603A2 (en) * | 2004-02-03 | 2005-08-18 | Abbott Laboratories | Aminobenzoxazoles as therapeutic agents |
WO2007144202A1 (en) * | 2006-06-13 | 2007-12-21 | Bayer Schering Pharma Aktiengesellschaft | Substituted aminopyrazolopyridines and salts thereof, their preparations and pharmaceutical compositions comprising them |
CN109348715A (en) * | 2016-03-28 | 2019-02-15 | 因赛特公司 | Pyrrolotriazine compounds as TAM inhibitor |
CN110627796A (en) * | 2018-06-21 | 2019-12-31 | 北京越之康泰生物医药科技有限公司 | Nitrogenous heterocyclic derivative and application thereof in medicine |
WO2021233236A1 (en) * | 2020-05-18 | 2021-11-25 | 北京范恩柯尔生物科技有限公司 | Substituted heteroaryl compound, and composition and use thereof |
CN113912628A (en) * | 2020-07-10 | 2022-01-11 | 北京范恩柯尔生物科技有限公司 | Triazine compound and composition and application thereof |
-
2022
- 2022-09-22 TW TW111135931A patent/TW202330519A/en unknown
- 2022-09-26 CN CN202280007313.2A patent/CN116437918A/en active Pending
- 2022-09-26 WO PCT/CN2022/121368 patent/WO2023051464A1/en active Application Filing
- 2022-09-29 AR ARP220102627A patent/AR127185A1/en unknown
Patent Citations (6)
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WO2005074603A2 (en) * | 2004-02-03 | 2005-08-18 | Abbott Laboratories | Aminobenzoxazoles as therapeutic agents |
WO2007144202A1 (en) * | 2006-06-13 | 2007-12-21 | Bayer Schering Pharma Aktiengesellschaft | Substituted aminopyrazolopyridines and salts thereof, their preparations and pharmaceutical compositions comprising them |
CN109348715A (en) * | 2016-03-28 | 2019-02-15 | 因赛特公司 | Pyrrolotriazine compounds as TAM inhibitor |
CN110627796A (en) * | 2018-06-21 | 2019-12-31 | 北京越之康泰生物医药科技有限公司 | Nitrogenous heterocyclic derivative and application thereof in medicine |
WO2021233236A1 (en) * | 2020-05-18 | 2021-11-25 | 北京范恩柯尔生物科技有限公司 | Substituted heteroaryl compound, and composition and use thereof |
CN113912628A (en) * | 2020-07-10 | 2022-01-11 | 北京范恩柯尔生物科技有限公司 | Triazine compound and composition and application thereof |
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TW202330519A (en) | 2023-08-01 |
CN116437918A (en) | 2023-07-14 |
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