WO2023040623A1 - Method for and application of site-directed mutation of brassica napus bnhbbd gene - Google Patents

Method for and application of site-directed mutation of brassica napus bnhbbd gene Download PDF

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WO2023040623A1
WO2023040623A1 PCT/CN2022/114878 CN2022114878W WO2023040623A1 WO 2023040623 A1 WO2023040623 A1 WO 2023040623A1 CN 2022114878 W CN2022114878 W CN 2022114878W WO 2023040623 A1 WO2023040623 A1 WO 2023040623A1
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bnhbbd
gene
brassica napus
seq
crispr
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Chinese (zh)
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谭小力
耿瑞
朱克明
王政
丁丽娜
曹军
李玉龙
薛怡萱
单悦
李雷
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江苏大学
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Definitions

  • the invention belongs to the technical field of plant gene editing and plant breeding, and in particular relates to a method and application of site-directed mutation of BnHBBD gene of Brassica napus.
  • Rapeseed (Brassica napus L.) is one of the most widely planted oil crops in my country. It can not only be used to produce edible oil, but also can be used for ornamental purposes. It is one of the important economic crops in my country. Biological breeding and seed engineering are developing rapidly. At present, my country's breeding methods and technologies pay more attention to biological breeding, and will soon set up key special projects for the excavation and innovative utilization of agricultural biological germplasm resources to enhance innovation capabilities and improve the level of independent research and development.
  • rapeseed when rapeseed grows and blooms in a natural environment, various parts of rapeseed may be spread by Sclerotinia ascospores.
  • the fallen petals have the highest rate of carrying bacteria, and the hyphae will fall to the stems and leaves as the petals fall off, reinfecting rapeseed, and causing a large area of sclerotinia.
  • rape also has problems such as easy cracking of siliques, large loss of rapeseed caused by mechanized harvesting, low harvesting efficiency, and short flowering period suitable for viewing.
  • the invention provides a method and application of site-directed mutation of BnHBBD gene of Brassica napus.
  • the BnHBBD gene of Brassica napus is bred by site-directed mutation using CIRSPR/Cas9 system, and a transgenic plant with long flowering period, anti-sclerotinia and hard-to-crack silique is obtained.
  • Bn represents the English abbreviation of rapeseed
  • H, B, B, and D are the Chinese pinyin initials of Hua (Hua), Petal (Ban), Bu (Bu), and Drop (Diao), respectively.
  • a CRISPR/Cas9 system sequence element set for site-directed mutation of Brassica napus BnHBBD gene is firstly provided, wherein the sequence element set includes U6-26p-Target1-gRNA, U6-26p-Target2 -gRNA and Cas9 gene optimized according to codons;
  • the U6-26p-Target1-gRNA includes a promoter U6-26p, a gRNA backbone structure and Target1;
  • the U6-26p-Target2-gRNA includes a promoter U6-26p, a gRNA backbone structure, and Target2;
  • the Brassica napus BnHBBD gene includes BnHBBD-C06 and BnHBBD-A07
  • the Target1 is the target sequence of the gene BnHBBD-C06
  • the -Target2 is the target sequence of the gene BnHBBD-A07.
  • nucleotide sequence of the Target1 is: 5'-TACGATGGTTCTGCTCTGTC-3' (SEQ.ID.NO.1);
  • the nucleotide sequence of Target2 is: 5'-TGCAAGAATTGGAGCCACCG-3' (SEQ.ID.NO.2);
  • the nucleotide sequence of sgRNA is:
  • nucleotide sequence of the BnHBBD-C06 is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ.ID.NO.6;
  • the nucleotide sequence of BnHBBD-A07 is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7.
  • the present invention also provides a gene editing vector pKSE401-BnHBBD-CRISPR, said gene editing vector comprises the above-mentioned CRISPR/Cas9 system sequence element set for site-directed mutation of Brassica napus BnHBBD gene.
  • the present invention also provides a genetically engineered bacterium for site-directed mutation of the Brassica napus BnHBBD gene, the genetically engineered bacterium is obtained by transforming the host bacterium with the above-mentioned gene editing vector pKSE401-BnHBBD-CRISPR.
  • the present invention also provides a kit for site-directed mutation of Brassica napus BnHBBD gene, said kit being the above-mentioned gene editing vector or genetic engineering bacteria.
  • the present invention also provides the application of the above-mentioned sequence element group, gene editing vector pKSE401-BnHBBD-CRISPR, genetically engineered bacteria or kits, and the application includes:
  • the present invention also provides a method for site-directed mutation of Brassica napus BnHBBD gene using CIRSPR/Cas9 system, comprising:
  • Target1 and Target2 for the BnHBBD gene in Brassica napus design screening targets Target1 and Target2 for the BnHBBD gene in Brassica napus, and design sgRNA sequences, connect the two targets Target1 and Target2 to the sgRNA sequences respectively, and construct the dual-target gene editing vector pKSE401-BnHBBD- CRISPR;
  • the Brassica napus BnHBBD gene includes BnHBBD-C06 and BnHBBD-A07
  • the Target1 is the target sequence of the gene BnHBBD-C06
  • the -Target2 is the target sequence of the gene BnHBBD-A07
  • the nucleotide sequence of the Target1 is shown in SEQ.ID.NO.1,
  • the nucleotide sequence of the Target2 is shown in SEQ.ID.NO.2,
  • the nucleotide sequence of the sgRNA is shown in SEQ.ID.NO.3,
  • the nucleotide sequence of the BnHBBD-C06 is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ.ID.NO.6,
  • the nucleotide sequence of the BnHBBD-A07 is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7.
  • the mutation of BnHBBD gene includes the insertion of T base.
  • the present invention also provides the application of the mutated BnHBBD gene obtained by the above method in regulating the abscission of Brassica napus flower organs.
  • the application includes inhibiting the normal synthesis of HBBD protein in Brassica napus, breeding of Brassica napus with long flowering period, breeding of Brassica napus with anti-sclerotinia, and breeding of Rapeseed napus that is not easy to crack.
  • Inflorescence abscission loss (INFLORESCENCE DEFICIENT IN ABSCISSION, IDA) can combine with the co-receptor HAE and HSL2 proteins on the membrane, through phosphorylation and signal cascade amplification reaction, and transmit the abscission signal to the intracellular downstream regulatory factors, making abscission
  • the fruit is not easy to crack, and the rapeseed grains are not easy to fall off, which reduces the loss during the mechanized receiving process and improves the production efficiency of rapeseed.
  • BnaA07g27400D and BnaC06g29530D which have the highest expression level and are most similar to Arabidopsis for controlling flower organ shedding in Brassica napus, are determined, named BnHBBD- In A07 and BnHBBD-C06, CIRSPR/Cas9 system was used to perform site-directed mutation on the above genes, and rapeseed germplasm with non-shedding petals was obtained. Because only on the petals, the ascospores of Sclerotinia sclerotiorum can germinate to form hyphae, but they cannot germinate and form mycelia when they fall directly on the rape leaves. Therefore, the non-shedding of petals prevents the sclerotinia from further infiltrating the lower leaves, and can achieve antibacterial effect. disease purpose.
  • the invention successfully utilizes gene editing technology to edit in Brassica napus, greatly shortens the acquisition cycle of new germplasm, and provides new ideas for rape breeding.
  • the transformed strain obtained after the gene editing vector pKSE401-BnHBBD-CRISPR constructed by the present invention transforms rape, provides experimental materials for studying the function and mechanism of action of the gene BnHBBD, and can also be used as a new long-flowering, anti-sclerotinia and non-shattering Germplasm resources provide new gene sources for rapeseed breeding and help promote the progress of agricultural science.
  • Figure 1 is a comparison diagram of the nucleotide and amino acid sequences of BnHBBD-A07 and BnHBBD-C06.
  • Figure 2 is a schematic diagram of the positions of the selected Target1 and Target2 targets on the gene (a) and a schematic diagram of the LB and RB ranges in the pKSE401-BnHBBD-CRISPR plasmid (b), in the figure, LB: left boundary; RB: right Border; Kan: kanamycin resistance gene; P-CaMV35S: CaMV35 promoter; U6-26p-Target1-gRNA: gRNA expression element set, including promoter U6-26p, gRNA backbone structure and target 1 (Target1) ; U6-26p-Target2-gRNA: gRNA expression element set, including promoter U6-26p, gRNA backbone structure and target 2 (Target2); Cas9: Cas9 gene optimized according to codons.
  • Figure 3 is the gel map of PCR identification of leaf genome extracted from two positive plants obtained through transformation; in the figure, WT: wild type; hbbd-1, hbbd-2: mutant transgenic plants; +: positive control, pKSE401-BnHBBD- CRISPR plasmid; -: Negative control, ddH 2 O; Marker: Takara DL2000 DNA Marker.
  • Fig. 4 is a schematic diagram showing the analysis of the sequencing results of the BnHBBD-A07 gene (a) and the BnHBBD-C06 gene (b) in the hbbd mutant compared with the wild type.
  • Figure 5 is a schematic diagram of the frameshift mutation caused by the T insertion at the target point 1 of the hbbd mutant; (a) in the figure is the change of the BnHBBD-A07 gene in the mutant compared with the wild type; (b) is the change compared with the wild type Compared with the changes in the BnHBBD-C06 gene in the mutant.
  • Figure 6 is a comparison of the flowering period of the wild type (a) and the hbbd mutant's flower organ non-shedding phenotype (b).
  • Fig. 7 is a comparison chart of the silique maturity period of the flower organ non-shedding phenotype (hbbd) and the wild type (WT) of three different lines of the hbbd mutant.
  • Figure 8 is a comparison of the inflorescence stages of the mutant (hbbd) and the wild type (WT).
  • the numbers in the figure represent the position numbers of the rapeseed inflorescences.
  • the first flower of the bud is numbered 1, and the second flower is numbered 2. analogy.
  • Fig. 9 is a schematic diagram showing the comparison of pathogenesis pathways of S. sclerotiorum infecting hbbd mutant and wild type under natural conditions.
  • Figure 10 is a schematic diagram of the comparison of Sclerotinia infecting hbbd mutants and wild-type WT in the incubator environment; where the small arrows in (a) and (c) in the figure are the inoculation positions of Sclerotinia, (b) Long arrows represent wild-type petals falling off on leaves, (d) long arrows and crosses represent mutant petals not falling off on leaves, 0dpi and 4dpi represent 0 days and 4 days of inoculation with Sclerotinia sclerotiorum.
  • Figure 11 is a statistical chart of the number of cases after inoculation with Sclerotinia sclerotiorum. After the t test, P ⁇ 0.001, the difference is significant, and it is represented by three *.
  • Fig. 12 is a graph of measuring cracking force of siliques between mutant (hbbd) and wild type (WT). After t test, P ⁇ 0.05, the difference is significant, indicated by a *.
  • the culture medium and its formula adopted in the present invention are as follows:
  • LB liquid culture medium Weigh 10g of tryptone, 5g of yeast extract, and 10g of sodium chloride, dissolve them in 80mL of double-distilled water, set the volume to 1L, then divide them into 10 Erlenmeyer flasks, seal them with sealing film, and extinguish under high temperature and high pressure at 121°C. Bacteria for 15 minutes, cooled and stored in a 4°C refrigerator.
  • LB solid medium Weigh 10g of tryptone, 5g of yeast extract, 10g of sodium chloride, and 15g of agar powder, dissolve them in 800mL of double-distilled water, then set the volume to 1L, and then divide into 10 Erlenmeyer flasks and seal them with parafilm. Sterilize under high temperature and high pressure at 121°C for 15 minutes, and store in a refrigerator at 4°C after cooling. When in use, put it in a microwave oven and heat it until it melts. After the liquid cools down to about 50°C, add antibiotics, shake it up and immediately pour it into a sterile plate, about 10mL per plate.
  • M0 medium MS powder 4.4g/L, sucrose 30g/L, double-distilled water to volume, adjust the pH value to 5.84-5.88, coagulant Agar 10g/L, and pack after sterilization.
  • DM medium MS powder 4.4g/L, sucrose 30g/L, constant volume with double distilled water, adjust the pH value to 5.84-5.88, sterilize, add AS after cooling the medium, add 1mL AS to 1L (mother solution 100 ⁇ mol/ mL), put it in the refrigerator at 4°C for use, or add AS when in use.
  • M1 medium MS powder 4.4g/L, sucrose 30g/L, mannitol 18g/L, 2,4-D 1mg/L, KT 0.3mg/L, distilled water to volume, adjust pH value to 5.84-5.88 , coagulant Agar 10g/L, add AS after cooling the medium after sterilization, add 1mL AS (mother solution 100 ⁇ mol/mL) to 1L, put it in a 4°C refrigerator for later use, or add AS when in use.
  • AS mother solution 100 ⁇ mol/mL
  • M2 medium MS powder 4.4g/L, sucrose 30g/L, mannitol 18g/L, 2,4-D 1mg/L, KT 0.3mg/L, distilled water to volume, adjust pH value to 5.84-5.88 , coagulant Agar 10g/L, after the medium is cooled after sterilization, add: Timentin TMT 300mg/L, STS 150 ⁇ mol/L (note that it is prepared and used now, precipitation will appear after a long time), kanamycin 25mg /L, and then dispensed into sterile plates.
  • M3 medium MS powder 4.4g/L, glucose 10g/L, xylose 0.25g/L, MES 0.6g/L, distilled water to volume, adjust the pH value to 5.84-5.88, coagulant Agar 10g/L, After the medium cools down after sterilization, add: ZT 2mg/L, IAA 0.1mg/L, Timentin TMT 300mg/L, AgNO 3 150 ⁇ mol/L, Kanamycin 25mg/L, and then divide into sterile plates middle.
  • M4 medium MS powder 4.4g/L, sucrose 10g/L, distilled water to volume, adjust the pH value to 5.84-5.88, coagulant Agar 8g/L, add Timentin after the medium cools down after sterilization TMT 300mg/L, then dispense.
  • PDA solid medium Weigh 7.4g of potato dextrose agar medium powder purchased from Sinopharm Group, add it to 200mL of distilled water, sterilize at 121°C for 15 minutes, store it in a refrigerator at 4°C after cooling, and heat it in a microwave oven when in use When the liquid is cooled to about 50°C, add antibiotics, shake well and immediately pour into sterile plates, about 20mL per plate.
  • Embodiment 1 Identification and acquisition of BnHBBD gene
  • HBBD has 5 members.
  • the present invention utilizes transcriptome data and bioinformatics analysis for these 5 member genes, and obtains 2 genes with the highest expression and highest homology through phylogenetic tree and homology comparison HBBD genes——BnaA07g27400D and BnaC06g29530D (https://www.genoscope.cns.fr/brassicanapus/), (hereinafter briefly referred to as BnHBBD-A07 and BnHBBD-C06), due to the high similarity of these two genes, only There are several base differences, which are difficult to be distinguished by common PCR methods. In this embodiment, BnHBBD-A07 and BnHBBD-C06 are distinguished by sequencing methods.
  • Primers were designed according to the coding sequence (CDS sequence, gene numbers BnaA07g27400D and BnaC06g29530D) of the BnHBBD gene on the rape website (https://www.genoscope.cns.fr/brassicanapus/), and the primer sequences were:
  • HBBD-F (SEQ.ID.NO.13):ATGGCTCCGTGTCGTACG
  • HBBD-R (SEQ.ID.NO.14): TCAATGAGGATGAGAGTC;
  • the PCR reaction program was: pre-denaturation at 95°C for 3 min; denaturation at 95°C for 15 s, annealing at 52°C for 15 s, extension at 72°C for 30 s, and a total of 35 cycles; final extension at 72°C for 5 min.
  • the PCR product was subjected to gel electrophoresis in 2% agarose gel (mass volume fraction) at 120V for 30 min, and then photographed under an ultraviolet gel imager, and the results were recorded.
  • the results showed that the size of the target fragments amplified by the primers, namely the BnHBBD-A07 and BnHBBD-C06 gene fragments, was about 231bp.
  • the PCR amplification product BnHBBD gene was recovered from the agarose gel, and then the recovered PCR amplification product was The BnHBBD gene was connected to the pMD19-T vector (purchased from Treasure Bioengineering (Dalian) Co., Ltd.), and the connection system was: 4.5 ⁇ L gel recovery product, 0.5 ⁇ L pMD-19T vector, 5 ⁇ L Solution I (purchased from Treasure Bioengineering (Dalian) Co., Ltd. Co., Ltd.) at 16°C overnight to obtain the ligation product.
  • M13-R (SEQ. ID. NO. 16): CAGGAAACAGCTATGACC.
  • the PCR amplification reaction system is shown in Table 2.
  • the PCR reaction program was: pre-denaturation at 94°C for 3 min; denaturation at 94°C for 30 s, annealing at 50°C for 30 s, and extension at 72°C for 1 min, for a total of 28 cycles; final extension at 72°C for 10 min.
  • the result of PCR amplification was detected on 2% agarose gel, and the DNA fragment obtained by detection was found to be about 400bp, indicating that the transformation was successful.
  • Select 10 parts of successfully transformed bacterial solutions to draw 100 ⁇ L each and send them to Sangon Bioengineering ( Shanghai) Co., Ltd. sequencing.
  • the sequence of BnHBBD-A07 and BnHBBD-C06 can be obtained by analyzing the sequencing results, the nucleotide sequences of which are shown in SEQ.ID.NO.4 and SEQ.ID.NO.5, and the amino acid sequences are shown in SEQ.ID.NO.6 and SEQ.ID.NO.6 .ID.NO.7 shown.
  • nucleotide sequences of BnHBBD-C06 and BnHBBD-A07 differ by 4 bases in total, and these 4 bases are the 59th G ⁇ A and the 129th in BnHBBD-C06 and BnHBBD-A07, respectively.
  • Bit T ⁇ C, 140th bit T ⁇ A, and 159th bit C ⁇ G are the nucleotide sequence differences leading to two amino acid changes, which are N ⁇ S at position 20 and H ⁇ L at position 47 in BnHBBD-C06 and BnHBBD-A07, respectively. See Figure 1 for the comparison diagram.
  • Example 2 Construction of BnHBBD-A07 and BnHBBD-C06 editing vectors for directed mutation of Brassica napus genes based on CRISPR/Cas9 system
  • Target1 sequence is: 5 '-TACGATGGTTCTGCTCTGTC-3'(SEQ.ID.NO.1)
  • Target2 sequence is 5'-TGCAAGAATTGGAGCCACCG-3'(SEQ.ID.NO.2)
  • the 5' end of the sgRNA sequence [(20bptarget)GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGTCGGTGCTTTTTTTTT](SEQ.ID.NO.3), where (20bp target) is the length of Target1 and Target2, making the double-target gene editing vector pKSE401-BnHBBD -CRISPR can knock out the target sequence twice to ensure effective
  • the PCR reaction system is the same as that in Table 1. Denaturation at °C for 15s, annealing at 52°C for 15s, extension at 72°C for 30s, 35 cycles; final extension at 72°C for 5min.
  • the normal primer concentration of primers HBBD-DT1-BsF and HBBD-DT2-BsR is 10 ⁇ M; HBBD-DT1-F0 and HBBD-DT2-R0 are diluted 20 times, and the primer concentration should be 5 ⁇ M.
  • the specific reaction system is shown in Table 4.
  • the reaction conditions are 37°C for 5h, 50°C for 5min, and 80°C for 10min.
  • U626-IDF TGTCCCAGGATTAGAATGATTAGGC (SEQ.ID.NO.17)
  • the size of the fragment obtained after running the gel was 726bp.
  • the primer sequences are as follows:
  • U626-IDF TGTCCCAGGATTAGAATGATTAGGC (SEQ.ID.NO.17)
  • U629-IDF TTAATCCAAACTACTGCAGCCTGAC (SEQ.ID.NO.19);
  • the positive clones containing the two designed targets Target1 and Target2 in the sequencing results were expanded and cultured to extract the plasmid, so as to obtain the pKSE401-BnHBBD-CRISPR plasmid, and finally the plasmid was transformed into Agrobacterium GV3101, expanded and cultured to preserve the bacteria. to be used.
  • FIG. 2 is a schematic diagram (a) of the positions of the selected Target1 and Target2 targets on the gene and a schematic diagram (b) of the LB and RB ranges in the pKSE401-BnHBBD-CRISPR plasmid.
  • LB left border
  • RB right border
  • Kan kanamycin resistance gene
  • P-CaMV35S CaMV35 promoter
  • U6-26p-Target1-gRNA including promoter U6-26p, gRNA backbone structure and Target 1 (Target1)
  • U6-26p-Target2-gRNA gRNA expression element group, including promoter U6-26p, gRNA backbone structure and target 2 (Target2)
  • Cas9 according to the Cas9 gene after codon optimization, the The Cas9 gene is derived from the sequence of Streptococcus pyogenes and based on maize codon optimization, and the codon-optimized Cas9 gene is purchased from http://www.addgene.org
  • Brassica napus Y127 seeds that can grow quickly without vernalization (the seeds are from teacher Hong Dengfeng of Huazhong Agricultural University), put them in a 10mL centrifuge tube, and add alcohol with a volume fraction of 75% , turn it upside down, soak for 1min, absorb alcohol with a pipette, add an appropriate amount of sterile water to rinse 3-5 times; then add 15% bleach solution (8.115mL sterile water + 1.875mL sodium hypochlorite + 10 ⁇ L triton), Turn the centrifuge tube upside down and soak the seeds for 6 minutes.
  • the inoculation time must be strictly calculated. Choose repeated inoculation intervals of 2 hours, such as inoculation at 18:00 and 20:00 respectively, and select an appropriate concentration at 8:00 the next morning, which can prevent excessive bacterial concentration.
  • select a positive single colony to inoculate the bacteria on the resistant plate, and incubate at 28°C for 48 hours. After the positive bacteria reproduce a single colony on the plate, use a 10 ⁇ L pipette tip to absorb the single colony and repeatedly blow it in the culture medium several times. make the bacteria grow evenly.
  • a spectrophotometer to measure the OD value of the bacteria in the LB medium described in step B. It is better to select the bacterial solution with an OD value of about 0.4, and generally shake the bacteria for 14-16 hours.
  • step A Use sterile dissecting scissors to cut the rape hypocotyls grown after sowing in step A, cut them into small pieces of 0.8cm-1.0cm, put them in a petri dish containing 18mL of DM liquid, wait until the hypocotyls are all cut into small pieces , and then pour 2mL of the bacteria solution resuspended with DM (AS + ) solution above, at this time the volume of the liquid in the dish is 20mL, soak for 10-15min (the time should not be long, otherwise the explants will easily die), and shake it at intervals 1 time, 4 to 5 times.
  • AS + the bacteria solution resuspended with DM
  • the green shoot that will have complete growth point is transferred in the M4 medium and grows up and takes root, needs about 20 days. After rooting, it can be directly placed in the cultivation room for seedling hardening. After the seedlings are in a stable state, take them out of the medium. Do not damage the root system of the plant during the seedling taking process, and then move the seedlings to the soil for cultivation. During cultivation, they need to be kept moist with plastic wrap In 1-2 weeks, the transgenic rape waiting to be identified can be obtained.
  • the DNA in the transgenic rapeseed leaf is extracted by the CTAB method, and the specific steps are as follows:
  • Primer set 1 the length of the amplified fragment is 726bp
  • U626-IDF TGTCCCAGGATTAGAATGATTAGGC (SEQ.ID.NO.17)
  • Primer set 2 the length of the amplified fragment is 701bp
  • Cas9-F TGCAGGAGATTTTTCTCCAACGA (SEQ.ID.NO.20)
  • Cas9-R AGCCTTCGTAATCTCGGTGTTCA (SEQ.ID.NO.21)
  • Figure 3 is the gel map of PCR identification of leaf genome extracted from two positive plants obtained through transformation; in the figure, WT: wild type; hbbd-1, hbbd-2: mutant transgenic plants; +: positive control, pKSE401-BnHBBD- CRISPR plasmid; -: negative control, ddH2O; Marker: Takara DL2000 DNA Marker.
  • Example 3 It can be confirmed in the figure that the gene editing vector constructed in Example 3 was successfully transformed into rapeseed, and it was confirmed that through the process of plant tissue culture, a positive strain with successful identification was obtained.
  • Figure 5 is a schematic diagram of the frameshift mutation caused by the T insertion at the target point 1 of the hbbd mutant; (a) in the figure is the change of the BnHBBD-A07 gene in the mutant compared with the wild type; (b) is the change compared with the wild type Compared with the changes in the BnHBBD-C06 gene in the mutant.
  • Example 5 Analysis of non-shedding phenotype of flower organs of transgenic Brassica napus
  • Example 4 Place the successfully verified hbbd mutant in Example 4 in an incubator with 16 hours of light, 8 hours of darkness, and a relative humidity of 70%. ) and mutants to observe and record the petal shedding. Three biological repetitions were carried out in this experiment. The attachment of flower organs refers to the natural shedding situation not affected by external force. The specific time is from flower bud opening to complete shedding. The results are shown in Table 5.
  • Figure 6 is a comparison of the flowering period of the wild type (a) and the hbbd mutant's floral organ non-shedding phenotype (b), it can be clearly found that the mutant's floral organ is attached to the detachment area, and through the statistics of Table 5, it can be found that the hbbd mutant's Under the influence of no external force, flower organs can continue to exist from the flower bud stage, early bloom stage, full flower stage, pollination stage, and mature stage.
  • Fig. 7 is a comparison chart of the silique maturity period of the flower organ non-shedding phenotype (hbbd) and the wild type (WT) of three different lines of the hbbd mutant.
  • Figure 8 is a comparison of inflorescence stages between the hbbd mutant type (hbbd) and the wild type (WT).
  • the numbers in the figure represent the position numbers of the rapeseed inflorescences. And so on. It can be seen from the figure that if the flower is marked according to the position of the inflorescence, the phenotype that the flower organ does not detach can be seen more clearly.
  • Fig. 9 is a schematic diagram showing the comparison of pathogenesis pathways of S. sclerotiorum infecting hbbd mutant and wild type under natural conditions. It can be seen from the figure that the floral organ of the hbbd mutant does not fall off, and the ascospores floating on the floral organ will not grow.
  • the hbbd mutant flower organ is also tested in the incubator environment to avoid the disease phenotype of Sclerotinia sclerotiorum
  • the specific test method is: inoculate the Sclerotinia sclerotia obtained by separating in the test field on PDA solid culture In the dish, cultured upside down at 28°C for 6 days. After the hyphae grow to the edge of the dish, take a 0.3cm*0.3cm stack of bacteria from the edge and inoculate them on the petals of 3 wild-type and 3 mutant strains respectively. 6 petals were inoculated, and then the inoculated plants were placed in an artificial climate box (purchased from Shanghai Yiheng Scientific Instrument Co., Ltd.) for cultivation.
  • the cultivation conditions were 22° C. of temperature, 90% humidity, 12h weak light, 12h dark culture, every 12h to observe the growth of mycelia. . .
  • Table 6 shows the statistics of the disease after inoculation of S. sclerotiorum on the petals.
  • Table 6 is a statistical table of the incidence of Sclerotinia sclerotiorum on the petals. It can be seen from the table that after S. sclerotiorum infects the hbbd mutant and wild-type WT, the petals of the wild-type WT basically all fell ill after inoculation, while hbbd The mutants were basically free of disease after inoculation.
  • Figure 10 is a schematic diagram of the comparison of the incidence of hbbd mutants and wild-type WT infected by S.
  • Arrows represent wild-type petals shedding on leaves, (d) long arrows and crosses represent mutant petals not falling on leaves, dpi (day of post-inoculation), 0dpi and 4dpi represent 0 days and 4 days of inoculation with Sclerotinia sclerotiorum sky. It can be seen from the figure that the petals of wild-type WT will fall off, and with a high probability, the sclerotinia that has started to grow will detach and attach to the leaves.
  • Figure 11 is a statistical chart of the number of diseased petals after inoculation with Sclerotinia sclerotiorum. After the t test, P ⁇ 0.001, it can be seen that the number of diseased petals of the mutant hbbd is significantly lower than that of the wild-type WT.
  • the hbbd mutant and wild-type siliques were also tested for cracking force.
  • the specific test steps are as follows: take a total of 10 mature siliques of the wild-type and hbbd mutant 40 days after flowering, and place them in a temperature of 25°C and a humidity of 50°C. % environment for one week, then stick the siliques on the thin board with glue, so that the plane where the rape silique pseudo-diaphragm is located is parallel to the plane of the plank, the tail of the silique is aligned with the edge of the plank, and the silique stalk is outside the plank.
  • FIG. 12 is the measurement diagram of the cracking force of mutant (hbbd) and wild type (WT) siliques. It can be seen from the figure that the maximum cracking force data of wild type siliques is about 0.3-0.5N, and the maximum tensile force of mutant siliques is The cracking force data is about 0.6-0.8N. After the t test, P ⁇ 0.05, the cracking force of the mutant is significantly increased compared with the wild type, that is, the ability of the silique to resist cracking is enhanced.
  • HBBD protein in Brassica napus is also one of the important proteins that regulate the shedding of floral organs, and it provides certain utilization resources for prolonging the flowering period, anti-sclerotinia and mechanized harvesting.

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Abstract

Provided are a method for and an application of site-directed mutation of a Brassica napus BnHBBD gene, belonging to the technical field of plant gene editing and plant breeding. Screening targets Target1 and Target2 for the Brassica napus BnHBBD gene are designed, an sgRNA sequence is also designed, and the two targets, Target1 and Target2, are then linked to two identical sgRNA sequences to construct a dual-target gene editing vector pKSE401-BnHBBD-CRISPR to transform Brassica napus, so as to realize site-directed mutation of the Brassica napus BnHBBD gene and obtain a transgenic plant that has a long flowering period, is resistant to sclerotinia, and has hard-to-crack siliques; the gene editing technology is successfully used to edit Brassica napus, which greatly shortens the acquisition period of new germplasm and provides new ideas for rapeseed breeding.

Description

一种甘蓝型油菜BnHBBD基因定点突变的方法及应用A method and application of site-directed mutation of Brassica napus BnHBBD gene 技术领域technical field
本发明属于植物基因编辑和植物育种技术领域,具体涉及一种甘蓝型油菜BnHBBD基因定点突变的方法及应用。The invention belongs to the technical field of plant gene editing and plant breeding, and in particular relates to a method and application of site-directed mutation of BnHBBD gene of Brassica napus.
背景技术Background technique
油菜(Brassica napus L.)是我国种植最广泛的油料作物之一,它不仅可以用来生产食用油,也可用来观赏,是我国重要的经济作物之一。生物育种和种子工程发展迅速,目前,我国的育种手段和技术更加注重生物育种,并即将对农业生物种质资源挖掘与创新利用设立重点专项,增强创新能力,提高自主研发水平。Rapeseed (Brassica napus L.) is one of the most widely planted oil crops in my country. It can not only be used to produce edible oil, but also can be used for ornamental purposes. It is one of the important economic crops in my country. Biological breeding and seed engineering are developing rapidly. At present, my country's breeding methods and technologies pay more attention to biological breeding, and will soon set up key special projects for the excavation and innovative utilization of agricultural biological germplasm resources to enhance innovation capabilities and improve the level of independent research and development.
在现代社会,随着人们生活水平的提高,加之油菜花颜色鲜艳、花色多、分布广泛、管理简单、投入较低,很自然的就成为了极具观赏价值的农田景观作物,油菜旅游业逐渐愈发火热。最为出名的江苏兴化的垛田油菜花景区和青海门源的油菜花海景区,仅一天的门票收入就有近百万,综合旅游收入数十亿(数据来源江苏省人民政府、门源县人民政府)。In modern society, with the improvement of people's living standards, rapeseed has bright colors, many colors, wide distribution, simple management, and low investment. It has naturally become a farmland landscape crop with great ornamental value. Rapeseed tourism has gradually It's getting hotter. The most famous Duotian Rapeseed Blossom Scenic Spot in Xinghua, Jiangsu Province and the Rapeseed Blossom Sea Scenic Spot in Menyuan, Qinghai Province have nearly one million ticket sales per day, and billions of comprehensive tourism revenue (data sourced from People’s Government of Jiangsu Province, Menyuan County People's Government).
基因编辑(Gene Editing),是一种新兴、精确的能对生物体基因组特定基因进行修饰的基因工程技术。近年来,有研究利用基因编辑技术将大豆中LNK2基因的敲除影响了大豆的开花时间,还有研究利用CRISPR/Cas9系统获得水稻突变体,发现丙酮酸酶和细胞周期蛋白的表达之间的关系,提高了籽粒产量;研究还发现通过多重gRNA和单gRNA敲除油菜中异源四倍体的多个溶血磷脂酸酰基转移酶LPAT(Lysophosphatidic acid acyltransferase)基因会引起脂肪酸含量变化。目前,CRISPR/Cas9系统定点突变技术已经逐步成熟,可以极大缩短新种质的获得周期。Gene editing is an emerging and precise genetic engineering technology that can modify specific genes in the genome of organisms. In recent years, some studies have used gene editing technology to knock out the LNK2 gene in soybeans to affect the flowering time of soybeans, and some studies have used the CRISPR/Cas9 system to obtain rice mutants, and found that there is a relationship between the expression of pyruvatease and cell cycle proteins. The study also found that knocking out multiple lysophosphatidic acid acyltransferase (Lysophosphatidic acid acyltransferase) genes in rapeseed by multiple gRNA and single gRNA can cause changes in fatty acid content. At present, the site-directed mutation technology of CRISPR/Cas9 system has gradually matured, which can greatly shorten the acquisition cycle of new germplasm.
目前,油菜在自然环境下生长开花时,油菜的各个部位可能会被传播核盘菌子囊孢子。在油菜的各个部位中,凋落的花瓣带菌率最高,且菌丝会随着花瓣的脱落飘落到茎和叶片上,对油菜进行再次侵染,进而造成大面积菌核病发病。除此之外,油菜还存在着角果易开裂,机械化收割造成菜籽损耗大、收割效率不高、适宜观赏花期短等问题。At present, when rapeseed grows and blooms in a natural environment, various parts of rapeseed may be spread by Sclerotinia ascospores. Among the various parts of rapeseed, the fallen petals have the highest rate of carrying bacteria, and the hyphae will fall to the stems and leaves as the petals fall off, reinfecting rapeseed, and causing a large area of sclerotinia. In addition, rape also has problems such as easy cracking of siliques, large loss of rapeseed caused by mechanized harvesting, low harvesting efficiency, and short flowering period suitable for viewing.
发明内容Contents of the invention
针对现有技术中存在不足,本发明提供了一种甘蓝型油菜BnHBBD基因定点突变的方法及应用。在本发明中,利用CIRSPR/Cas9系统对甘蓝型油菜的BnHBBD基因定点突变来育种,获得了一种具有长开花期、抗菌核病和角果不易开裂的转基因植株。其中,基因BnHBBD名中,Bn表示油菜英文简写,H、B、B、D分别为花(Hua)、瓣(Ban)、不(Bu)、掉(Diao)的汉语拼音首字母。Aiming at the deficiencies in the prior art, the invention provides a method and application of site-directed mutation of BnHBBD gene of Brassica napus. In the present invention, the BnHBBD gene of Brassica napus is bred by site-directed mutation using CIRSPR/Cas9 system, and a transgenic plant with long flowering period, anti-sclerotinia and hard-to-crack silique is obtained. Among them, in the name of the gene BnHBBD, Bn represents the English abbreviation of rapeseed, and H, B, B, and D are the Chinese pinyin initials of Hua (Hua), Petal (Ban), Bu (Bu), and Drop (Diao), respectively.
本发明中,首先提供了一种用于甘蓝型油菜BnHBBD基因定点突变的CRISPR/Cas9系统序列元件组,其特征在于,所述序列元件组包括U6-26p-Target1-gRNA、U6-26p-Target2-gRNA和根据密码子优化后的Cas9基因;In the present invention, a CRISPR/Cas9 system sequence element set for site-directed mutation of Brassica napus BnHBBD gene is firstly provided, wherein the sequence element set includes U6-26p-Target1-gRNA, U6-26p-Target2 -gRNA and Cas9 gene optimized according to codons;
所述U6-26p-Target1-gRNA包括启动子U6-26p,gRNA骨架结构和Target1;所述U6-26p-Target2-gRNA包括启动子U6-26p,gRNA骨架结构,Target2;The U6-26p-Target1-gRNA includes a promoter U6-26p, a gRNA backbone structure and Target1; the U6-26p-Target2-gRNA includes a promoter U6-26p, a gRNA backbone structure, and Target2;
其中,所述甘蓝型油菜BnHBBD基因包括BnHBBD-C06和BnHBBD-A07,所述Target1为基因BnHBBD-C06的靶点序列,所述-Target2为基因BnHBBD-A07的靶点序列。Wherein, the Brassica napus BnHBBD gene includes BnHBBD-C06 and BnHBBD-A07, the Target1 is the target sequence of the gene BnHBBD-C06, and the -Target2 is the target sequence of the gene BnHBBD-A07.
其中,所述Target1的核苷酸序列为:5’-TACGATGGTTCTGCTCTGTC-3’(SEQ.ID.NO.1);Wherein, the nucleotide sequence of the Target1 is: 5'-TACGATGGTTCTGCTCTGTC-3' (SEQ.ID.NO.1);
Target2的核苷酸序列为:5’-TGCAAGAATTGGAGCCACCG-3’(SEQ.ID.NO.2);The nucleotide sequence of Target2 is: 5'-TGCAAGAATTGGAGCCACCG-3' (SEQ.ID.NO.2);
sgRNA的核苷酸序列为:The nucleotide sequence of sgRNA is:
GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGTCGGTGCTTTTTTT(SEQ.ID.NO.3)。GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGTCGGTGCTTTTTTT (SEQ. ID. NO. 3).
进一步的,所述BnHBBD-C06的核苷酸序列如SEQ.ID.NO.4所示,氨基酸序列如SEQ.ID.NO.6所示;Further, the nucleotide sequence of the BnHBBD-C06 is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ.ID.NO.6;
BnHBBD-A07的核苷酸序列如SEQ.ID.NO.5所示,氨基酸序列如SEQ.ID.NO.7所示。The nucleotide sequence of BnHBBD-A07 is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7.
本发明中还提供了一种基因编辑载体pKSE401-BnHBBD-CRISPR,所述基因编辑载体包含上述用于甘蓝型油菜BnHBBD基因定点突变的CRISPR/Cas9系统序列元件组。The present invention also provides a gene editing vector pKSE401-BnHBBD-CRISPR, said gene editing vector comprises the above-mentioned CRISPR/Cas9 system sequence element set for site-directed mutation of Brassica napus BnHBBD gene.
本发明中还提供了用于甘蓝型油菜BnHBBD基因定点突变的基因工程菌,所述基因工程菌采用上述基因编辑载体pKSE401-BnHBBD-CRISPR转化宿主细菌得到。The present invention also provides a genetically engineered bacterium for site-directed mutation of the Brassica napus BnHBBD gene, the genetically engineered bacterium is obtained by transforming the host bacterium with the above-mentioned gene editing vector pKSE401-BnHBBD-CRISPR.
本发明中还提供了一种用于甘蓝型油菜BnHBBD基因定点突变的试剂盒,所述试剂盒上述基因编辑载体或基因工程菌。The present invention also provides a kit for site-directed mutation of Brassica napus BnHBBD gene, said kit being the above-mentioned gene editing vector or genetic engineering bacteria.
本发明中还提供了上述序列元件组、基因编辑载体pKSE401-BnHBBD-CRISPR、基因工程菌或试剂盒的应用,所述应用包括:The present invention also provides the application of the above-mentioned sequence element group, gene editing vector pKSE401-BnHBBD-CRISPR, genetically engineered bacteria or kits, and the application includes:
A)在甘蓝型油菜基因BnHBBD-C06和/或基因BnHBBD-A07定点突变中的应用,所述BnHBBD-C06基因的核苷酸序列如SEQ.ID.NO.4所示,氨基酸序列如SEQ.ID.NO.6所示,所述BnHBBD-A07基因的核苷酸序列如SEQ.ID.NO.5所示,氨基酸序列如SEQ.ID.NO.7所示;A) Application in Brassica napus gene BnHBBD-C06 and/or gene BnHBBD-A07 site-directed mutation, the nucleotide sequence of the BnHBBD-C06 gene is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ. As shown in ID.NO.6, the nucleotide sequence of the BnHBBD-A07 gene is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7;
B)在具有长开花期的甘蓝型油菜育种中的应用;和/或B) use in the breeding of Brassica napus with a long flowering period; and/or
C)在具有抗菌核病的甘蓝型油菜育种中的应用;和/或C) application in the breeding of Brassica napus with anti-sclerotinia; and/or
D)在具有角果不易开裂的甘蓝型油菜育种中的应用。D) Application in the breeding of Brassica napus with siliques that are not easy to crack.
本发明中还提供了一种利用CIRSPR/Cas9系统对甘蓝型油菜BnHBBD基因定点突变的方法,包括:The present invention also provides a method for site-directed mutation of Brassica napus BnHBBD gene using CIRSPR/Cas9 system, comprising:
(1)针对甘蓝型油菜中的BnHBBD基因设计筛选靶点Target1和Target2,并设计sgRNA序列,将2个靶点Target1和Target2分别与sgRNA序列连接,构建出双靶点基因编辑载体pKSE401-BnHBBD-CRISPR;(1) Design screening targets Target1 and Target2 for the BnHBBD gene in Brassica napus, and design sgRNA sequences, connect the two targets Target1 and Target2 to the sgRNA sequences respectively, and construct the dual-target gene editing vector pKSE401-BnHBBD- CRISPR;
(2)将基因编辑载体pKSE401-BnHBBD-CRISPR转化农杆菌GV3101,得到含有基因编辑表达载体pKSE401-BnHBBD-CRISPR的农杆菌;(2) Transforming the gene editing vector pKSE401-BnHBBD-CRISPR into Agrobacterium GV3101 to obtain the Agrobacterium containing the gene editing expression vector pKSE401-BnHBBD-CRISPR;
(3)扩大培养,利用得到的农杆菌菌液介导油菜下胚轴转化;(3) expanding the culture, using the obtained Agrobacterium bacterium liquid to mediate the transformation of rape hypocotyl;
(4)油菜下胚轴培养、诱导愈伤组织、再分化、生根培养、炼苗、移栽,得到转基因油菜;(4) Rapeseed hypocotyl culture, callus induction, redifferentiation, rooting culture, seedling hardening, transplanting, to obtain transgenic rapeseed;
(5)鉴定获得BnHBBD基因发生突变的转基因植株。(5) Identify the transgenic plants with mutations in the BnHBBD gene.
其中,所述甘蓝型油菜BnHBBD基因包括BnHBBD-C06和BnHBBD-A07,所述Target1为基因BnHBBD-C06的靶点序列,所述-Target2为基因BnHBBD-A07的靶点序列,Wherein, the Brassica napus BnHBBD gene includes BnHBBD-C06 and BnHBBD-A07, the Target1 is the target sequence of the gene BnHBBD-C06, and the -Target2 is the target sequence of the gene BnHBBD-A07,
所述Target1的核苷酸序列如SEQ.ID.NO.1所示,The nucleotide sequence of the Target1 is shown in SEQ.ID.NO.1,
所述Target2的核苷酸序列如SEQ.ID.NO.2所示,The nucleotide sequence of the Target2 is shown in SEQ.ID.NO.2,
所述sgRNA的核苷酸序列如SEQ.ID.NO.3所示,The nucleotide sequence of the sgRNA is shown in SEQ.ID.NO.3,
所述BnHBBD-C06的核苷酸序列如SEQ.ID.NO.4所示,氨基酸序列如SEQ.ID.NO.6所示,The nucleotide sequence of the BnHBBD-C06 is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ.ID.NO.6,
所述BnHBBD-A07的核苷酸序列如SEQ.ID.NO.5所示,氨基酸序列如SEQ.ID.NO.7所示。The nucleotide sequence of the BnHBBD-A07 is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7.
其中,BnHBBD基因发生的突变包括T碱基的插入。Wherein, the mutation of BnHBBD gene includes the insertion of T base.
本发明中还提供了上述方法获得的突变后的BnHBBD基因在调控甘蓝型油菜花器官脱落中的应用。The present invention also provides the application of the mutated BnHBBD gene obtained by the above method in regulating the abscission of Brassica napus flower organs.
具体的,所述应用包括抑制甘蓝型油菜中的HBBD蛋白正常合成、长开花期的甘蓝型油菜育种、抗菌核病甘蓝型油菜育种、角果不易开裂油菜育种。Specifically, the application includes inhibiting the normal synthesis of HBBD protein in Brassica napus, breeding of Brassica napus with long flowering period, breeding of Brassica napus with anti-sclerotinia, and breeding of Rapeseed napus that is not easy to crack.
与现有技术相比,本发明的有益效果在于:Compared with prior art, the beneficial effect of the present invention is:
花序脱落缺失(INFLORESCENCE DEFICIENT IN ABSCISSION,IDA)可以通过与膜上的共受体HAE和HSL2蛋白进行结合,通过磷酸化和信号级联放大反应,将脱落信号传递给胞内下游调控因子,使得脱落区(ABSCISSION ZONE,AZ)细胞扩大,最终导致花器官脱离,而突变体脱离区细胞不再扩张,花瓣不再脱落,使角果果皮和假隔膜之间的离层受到一定影响,进而使角果不易开裂,油菜粒不易脱落,减少机械化收货过程中的损失,提高油菜的生产效率。本发明中,在油菜的5个同源基因中,确定了表达量最高,且与拟南芥最为相近的2个在甘蓝型油菜中控制花器官脱落的有效基因BnaA07g27400D和BnaC06g29530D,命名为BnHBBD-A07和BnHBBD-C06,利用CIRSPR/Cas9系统对上述基因进行定点突变,获得了花瓣不脱落的油菜种质。由于只有在花瓣上,核盘菌的子囊孢子才能萌发形成菌丝,而 直接落在油菜叶片上不能萌发形成菌丝,因此花瓣不脱落阻断了菌核菌进一步浸染下部叶片,可以达到抗菌核病的目的。Inflorescence abscission loss (INFLORESCENCE DEFICIENT IN ABSCISSION, IDA) can combine with the co-receptor HAE and HSL2 proteins on the membrane, through phosphorylation and signal cascade amplification reaction, and transmit the abscission signal to the intracellular downstream regulatory factors, making abscission The cells in the ABSCISSION ZONE (AZ) expanded, which eventually led to the detachment of the floral organ, while the cells in the detachment zone of the mutant no longer expanded, and the petals no longer fell off, which affected the absorptive layer between the silique peel and the pseudodiaphragm, and then made the horn The fruit is not easy to crack, and the rapeseed grains are not easy to fall off, which reduces the loss during the mechanized receiving process and improves the production efficiency of rapeseed. In the present invention, among the five homologous genes of rapeseed, two effective genes BnaA07g27400D and BnaC06g29530D, which have the highest expression level and are most similar to Arabidopsis for controlling flower organ shedding in Brassica napus, are determined, named BnHBBD- In A07 and BnHBBD-C06, CIRSPR/Cas9 system was used to perform site-directed mutation on the above genes, and rapeseed germplasm with non-shedding petals was obtained. Because only on the petals, the ascospores of Sclerotinia sclerotiorum can germinate to form hyphae, but they cannot germinate and form mycelia when they fall directly on the rape leaves. Therefore, the non-shedding of petals prevents the sclerotinia from further infiltrating the lower leaves, and can achieve antibacterial effect. disease purpose.
本发明成功利用基因编辑技术在甘蓝型油菜中进行编辑,极大的缩短了新种质的获得周期,为油菜育种提供新思路。本发明构建的基因编辑载体pKSE401-BnHBBD-CRISPR转化油菜后获得的转化株,为研究基因BnHBBD的功能及作用机制提供了实验材料,也可作为新的长开花期、抗菌核病和不落粒种质资源,为油菜育种提供新的基因源,有助于推动农业科学进步。The invention successfully utilizes gene editing technology to edit in Brassica napus, greatly shortens the acquisition cycle of new germplasm, and provides new ideas for rape breeding. The transformed strain obtained after the gene editing vector pKSE401-BnHBBD-CRISPR constructed by the present invention transforms rape, provides experimental materials for studying the function and mechanism of action of the gene BnHBBD, and can also be used as a new long-flowering, anti-sclerotinia and non-shattering Germplasm resources provide new gene sources for rapeseed breeding and help promote the progress of agricultural science.
附图说明Description of drawings
图1为BnHBBD-A07和BnHBBD-C06核苷酸及氨基酸序列差异比对图。Figure 1 is a comparison diagram of the nucleotide and amino acid sequences of BnHBBD-A07 and BnHBBD-C06.
图2为所选取的Target1和Target2靶点在基因上的位置示意图(a)与pKSE401-BnHBBD-CRISPR质粒中LB和RB范围内简略示意图(b),图中,LB:左边界;RB:右边界;Kan:卡那霉素抗性基因;P-CaMV35S:CaMV35启动子;U6-26p-Target1-gRNA:gRNA表达元件组,包括启动子U6-26p、gRNA骨架结构和靶点1(Target1);U6-26p-Target2-gRNA:gRNA表达元件组,包括启动子U6-26p、gRNA骨架结构和靶点2(Target2);Cas9:根据密码子优化后的Cas9基因。Figure 2 is a schematic diagram of the positions of the selected Target1 and Target2 targets on the gene (a) and a schematic diagram of the LB and RB ranges in the pKSE401-BnHBBD-CRISPR plasmid (b), in the figure, LB: left boundary; RB: right Border; Kan: kanamycin resistance gene; P-CaMV35S: CaMV35 promoter; U6-26p-Target1-gRNA: gRNA expression element set, including promoter U6-26p, gRNA backbone structure and target 1 (Target1) ; U6-26p-Target2-gRNA: gRNA expression element set, including promoter U6-26p, gRNA backbone structure and target 2 (Target2); Cas9: Cas9 gene optimized according to codons.
图3为经过转化得到2株阳性株中提取叶片基因组的PCR鉴定胶图;图中,WT:野生型;hbbd-1、hbbd-2:突变体转基因植株;+:正对照,pKSE401-BnHBBD-CRISPR质粒;-:负对照,ddH 2O;Marker:Takara DL2000 DNA Marker。 Figure 3 is the gel map of PCR identification of leaf genome extracted from two positive plants obtained through transformation; in the figure, WT: wild type; hbbd-1, hbbd-2: mutant transgenic plants; +: positive control, pKSE401-BnHBBD- CRISPR plasmid; -: Negative control, ddH 2 O; Marker: Takara DL2000 DNA Marker.
图4为与野生型相比hbbd突变体中BnHBBD-A07基因(a)和BnHBBD-C06基因(b)的测序结果分析示意图。Fig. 4 is a schematic diagram showing the analysis of the sequencing results of the BnHBBD-A07 gene (a) and the BnHBBD-C06 gene (b) in the hbbd mutant compared with the wild type.
图5为hbbd突变体靶点1处T插入导致的移码突变简析示意图;图中(a)为与野生型相比突变体中BnHBBD-A07基因发生的改变;(b)为与野生型相比突变体中BnHBBD-C06基因发生的改变。Figure 5 is a schematic diagram of the frameshift mutation caused by the T insertion at the target point 1 of the hbbd mutant; (a) in the figure is the change of the BnHBBD-A07 gene in the mutant compared with the wild type; (b) is the change compared with the wild type Compared with the changes in the BnHBBD-C06 gene in the mutant.
图6为野生型(a)与hbbd突变体花器官不脱落表型(b)的花期对比图。Figure 6 is a comparison of the flowering period of the wild type (a) and the hbbd mutant's flower organ non-shedding phenotype (b).
图7为hbbd突变体3个不同株系的花器官不脱落表型(hbbd)与野生型(WT)的角果成熟期对比图。Fig. 7 is a comparison chart of the silique maturity period of the flower organ non-shedding phenotype (hbbd) and the wild type (WT) of three different lines of the hbbd mutant.
图8为突变体(hbbd)与野生型(WT)的花序时期对比图,图中数字代表油菜花序的位置编号,花苞开放的第一朵花编号为1,第二朵花编号为2,依次类推。Figure 8 is a comparison of the inflorescence stages of the mutant (hbbd) and the wild type (WT). The numbers in the figure represent the position numbers of the rapeseed inflorescences. The first flower of the bud is numbered 1, and the second flower is numbered 2. analogy.
图9为在自然情况下,核盘菌侵染hbbd突变体与野生型发病途径对比示意图。Fig. 9 is a schematic diagram showing the comparison of pathogenesis pathways of S. sclerotiorum infecting hbbd mutant and wild type under natural conditions.
图10为在培养箱环境下,核盘菌侵染hbbd突变体与野生型WT发病情况对比示意图;其中图中(a)与(c)的小箭头处为核盘菌接种位置,(b)为长箭头代表野生型花瓣脱落至叶片 上,(d)为长箭头与叉号代表突变体花瓣不脱落至叶片上,0dpi和4dpi代表接种核盘菌0天和4天。Figure 10 is a schematic diagram of the comparison of Sclerotinia infecting hbbd mutants and wild-type WT in the incubator environment; where the small arrows in (a) and (c) in the figure are the inoculation positions of Sclerotinia, (b) Long arrows represent wild-type petals falling off on leaves, (d) long arrows and crosses represent mutant petals not falling off on leaves, 0dpi and 4dpi represent 0 days and 4 days of inoculation with Sclerotinia sclerotiorum.
图11为接种核盘菌后发病数量统计图,经过t检验,P<0.001,差异显著,使用三个*表示。Figure 11 is a statistical chart of the number of cases after inoculation with Sclerotinia sclerotiorum. After the t test, P<0.001, the difference is significant, and it is represented by three *.
图12为突变体(hbbd)与野生型(WT)角果开裂力测定图,经过t检验,P<0.05,差异显著,使用一个*表示。Fig. 12 is a graph of measuring cracking force of siliques between mutant (hbbd) and wild type (WT). After t test, P<0.05, the difference is significant, indicated by a *.
具体实施方式Detailed ways
下面结合附图以及具体实施例对本发明作进一步的说明,但本发明的保护范围并不限于此。The present invention will be further described below in conjunction with the accompanying drawings and specific embodiments, but the protection scope of the present invention is not limited thereto.
在以下的实施例中,未详细描述的各种过程和方法均是本领域中公知的常规方法。所用试剂的来源、商品名以及有必要列出其组成成分者,均在首次出现时表明,其后所用相同试剂无特殊说明,均以首次表明的内容相同;所涉及到的是试剂、材料等如无特殊说明,均为商业途径获得。In the following examples, various processes and methods not described in detail are conventional methods well known in the art. The source and trade name of the reagents used, as well as those whose components must be listed, are indicated when they appear for the first time. There is no special description for the same reagents used thereafter, and the content indicated for the first time is the same; what is involved is reagents, materials, etc. Unless otherwise specified, all are commercially obtained.
本发明中所采用的培养基及其配方如下所示:The culture medium and its formula adopted in the present invention are as follows:
LB液体培养基:称取胰蛋白胨10g、酵母提取物5g、氯化钠10g溶于80mL双蒸水中,定容1L,然后分装至10个锥形瓶用封口膜封口,121℃高温高压灭菌15min,冷却后放入4℃冰箱保存。LB liquid culture medium: Weigh 10g of tryptone, 5g of yeast extract, and 10g of sodium chloride, dissolve them in 80mL of double-distilled water, set the volume to 1L, then divide them into 10 Erlenmeyer flasks, seal them with sealing film, and extinguish under high temperature and high pressure at 121°C. Bacteria for 15 minutes, cooled and stored in a 4°C refrigerator.
LB固体培养基:称取胰蛋白胨10g、酵母提取物5g、氯化钠10g、琼脂粉15g溶于800mL双蒸水中,然后定容1L,然后分装至10个锥形瓶用封口膜封口,121℃高温高压灭菌15min,冷却后放入4℃冰箱保存。使用时放入微波炉中加热至融化,待液体冷却到50℃左右加入抗生素,摇匀后立刻倒至无菌平皿中,每皿约10mL。LB solid medium: Weigh 10g of tryptone, 5g of yeast extract, 10g of sodium chloride, and 15g of agar powder, dissolve them in 800mL of double-distilled water, then set the volume to 1L, and then divide into 10 Erlenmeyer flasks and seal them with parafilm. Sterilize under high temperature and high pressure at 121°C for 15 minutes, and store in a refrigerator at 4°C after cooling. When in use, put it in a microwave oven and heat it until it melts. After the liquid cools down to about 50°C, add antibiotics, shake it up and immediately pour it into a sterile plate, about 10mL per plate.
M0培养基:MS粉4.4g/L,蔗糖30g/L,双蒸水定容,调节pH值为5.84-5.88,凝固剂Agar 10g/L,灭菌后分装。M0 medium: MS powder 4.4g/L, sucrose 30g/L, double-distilled water to volume, adjust the pH value to 5.84-5.88, coagulant Agar 10g/L, and pack after sterilization.
DM培养基:MS粉4.4g/L,蔗糖30g/L,双蒸水定容,调节pH值为5.84-5.88,灭菌,等培养基冷却后加入AS,1L中加入1mL AS(母液100μmol/mL),放于4℃冰箱待用,也可以在用时在加入AS。DM medium: MS powder 4.4g/L, sucrose 30g/L, constant volume with double distilled water, adjust the pH value to 5.84-5.88, sterilize, add AS after cooling the medium, add 1mL AS to 1L (mother solution 100μmol/ mL), put it in the refrigerator at 4°C for use, or add AS when in use.
M1培养基:MS粉4.4g/L,蔗糖30g/L,甘露醇18g/L,2,4-D 1mg/L,KT 0.3mg/L,双蒸水定容,调节pH值为5.84-5.88,凝固剂Agar 10g/L,灭菌后等培养基冷却后加入AS,1L中加入1mL AS(母液100μmol/mL),放于4℃冰箱待用,也可以在用时在加入AS。M1 medium: MS powder 4.4g/L, sucrose 30g/L, mannitol 18g/L, 2,4-D 1mg/L, KT 0.3mg/L, distilled water to volume, adjust pH value to 5.84-5.88 , coagulant Agar 10g/L, add AS after cooling the medium after sterilization, add 1mL AS (mother solution 100μmol/mL) to 1L, put it in a 4°C refrigerator for later use, or add AS when in use.
M2培养基:MS粉4.4g/L,蔗糖30g/L,甘露醇18g/L,2,4-D 1mg/L,KT 0.3mg/L,双蒸水定容,调节pH值为5.84-5.88,凝固剂Agar 10g/L,灭菌后等培养基冷却后加入:特美 汀TMT 300mg/L,STS 150μmol/L(注意现配现用,时间长会有沉淀出现),卡那霉素25mg/L,然后分装到无菌平皿中。M2 medium: MS powder 4.4g/L, sucrose 30g/L, mannitol 18g/L, 2,4-D 1mg/L, KT 0.3mg/L, distilled water to volume, adjust pH value to 5.84-5.88 , coagulant Agar 10g/L, after the medium is cooled after sterilization, add: Timentin TMT 300mg/L, STS 150μmol/L (note that it is prepared and used now, precipitation will appear after a long time), kanamycin 25mg /L, and then dispensed into sterile plates.
M3培养基:MS粉4.4g/L,葡萄糖10g/L,木糖0.25g/L,MES 0.6g/L,双蒸水定容,调节pH值为5.84-5.88,凝固剂Agar 10g/L,灭菌后等培养基冷却后加入:ZT 2mg/L,IAA 0.1mg/L,特美汀TMT 300mg/L,AgNO 3 150μmol/L,卡那霉素25mg/L,然后分装到无菌平皿中。 M3 medium: MS powder 4.4g/L, glucose 10g/L, xylose 0.25g/L, MES 0.6g/L, distilled water to volume, adjust the pH value to 5.84-5.88, coagulant Agar 10g/L, After the medium cools down after sterilization, add: ZT 2mg/L, IAA 0.1mg/L, Timentin TMT 300mg/L, AgNO 3 150μmol/L, Kanamycin 25mg/L, and then divide into sterile plates middle.
M4培养基:MS粉4.4g/L,蔗糖10g/L,双蒸水定容,调节pH值为5.84-5.88,凝固剂Agar 8g/L,灭菌后等培养基冷却后加入:特美汀TMT 300mg/L,然后分装。M4 medium: MS powder 4.4g/L, sucrose 10g/L, distilled water to volume, adjust the pH value to 5.84-5.88, coagulant Agar 8g/L, add Timentin after the medium cools down after sterilization TMT 300mg/L, then dispense.
PDA固体培养基:称取买自国药集团的马铃薯葡萄糖琼脂培养基粉末7.4g,加入200mL蒸馏水中,121℃高温高压灭菌15min,冷却后放入4℃冰箱保存,使用时放入微波炉中加热至融化,待液体冷却到50℃左右加入抗生素,摇匀后立刻倒至无菌平皿中,每皿约20mL。PDA solid medium: Weigh 7.4g of potato dextrose agar medium powder purchased from Sinopharm Group, add it to 200mL of distilled water, sterilize at 121°C for 15 minutes, store it in a refrigerator at 4°C after cooling, and heat it in a microwave oven when in use When the liquid is cooled to about 50°C, add antibiotics, shake well and immediately pour into sterile plates, about 20mL per plate.
实施例1:BnHBBD基因的鉴定及获得Embodiment 1: Identification and acquisition of BnHBBD gene
在甘蓝型油菜中,HBBD有5个成员,本发明对这5个成员基因利用转录组数据及生物信息学分析,通过进化树及同源性比对获得2个表达量最高、同源性最高的HBBD基因——BnaA07g27400D和BnaC06g29530D(https://www.genoscope.cns.fr/brassicanapus/),(下文简述为BnHBBD-A07和BnHBBD-C06),由于这两个基因相似度较高,仅有几个碱基的差别,难以通过普通PCR的方法区分开,本实施例中通过测序的方法来分辨BnHBBD-A07和BnHBBD-C06。In Brassica napus, HBBD has 5 members. The present invention utilizes transcriptome data and bioinformatics analysis for these 5 member genes, and obtains 2 genes with the highest expression and highest homology through phylogenetic tree and homology comparison HBBD genes——BnaA07g27400D and BnaC06g29530D (https://www.genoscope.cns.fr/brassicanapus/), (hereinafter briefly referred to as BnHBBD-A07 and BnHBBD-C06), due to the high similarity of these two genes, only There are several base differences, which are difficult to be distinguished by common PCR methods. In this embodiment, BnHBBD-A07 and BnHBBD-C06 are distinguished by sequencing methods.
根据油菜网站(https://www.genoscope.cns.fr/brassicanapus/)上的BnHBBD基因的编码序列(CDS序列,基因号BnaA07g27400D和BnaC06g29530D)设计引物,引物序列为:Primers were designed according to the coding sequence (CDS sequence, gene numbers BnaA07g27400D and BnaC06g29530D) of the BnHBBD gene on the rape website (https://www.genoscope.cns.fr/brassicanapus/), and the primer sequences were:
HBBD-F(SEQ.ID.NO.13):ATGGCTCCGTGTCGTACGHBBD-F (SEQ.ID.NO.13):ATGGCTCCGTGTCGTACG
HBBD-R(SEQ.ID.NO.14):TCAATGAGGATGAGAGTC;HBBD-R (SEQ.ID.NO.14): TCAATGAGGATGAGAGTC;
然后以油菜品种Y127(来源于华中农业大学)的叶片DNA为模板,使用高保真酶2*Phanta MAX Master Mix(购自南京诺唯赞生物科技股份有限公司)扩增BnHBBD基因的CDS序列,PCR反应如表1所示。Then, using the leaf DNA of rapeseed variety Y127 (from Huazhong Agricultural University) as a template, the CDS sequence of the BnHBBD gene was amplified using high-fidelity enzyme 2*Phanta MAX Master Mix (purchased from Nanjing Nuvizym Biotechnology Co., Ltd.), and PCR The reactions are shown in Table 1.
表1.高保真酶PCR扩增反应体系Table 1. High fidelity enzyme PCR amplification reaction system
PCR反应体系PCR reaction system 体积volume
ddH 2O ddH 2 O 20μL20 μL
2*Phanta Max Master Mix2*Phanta Max Master Mix 25μL25 μL
上游引物(10μM)Upstream primer (10μM) 2μL2μL
下游引物(10μM)Downstream primer (10μM) 2μL2μL
模板DNA(50-400ng)Template DNA (50-400ng) 1μL1μL
PCR反应程序为:95℃预变性3min;95℃变性15s、52℃退火15s、72℃延伸30s,共进行35个循环;72℃终延伸5min。PCR反应结束后,将PCR产物在2%琼脂糖凝胶(质量体积分数)中120V下进行凝胶电泳30min,然后在紫外凝胶成像仪下照相,记录结果。结果显示,该引物扩增出的目的片段,即BnHBBD-A07和BnHBBD-C06基因片段的大小为231bp左右。The PCR reaction program was: pre-denaturation at 95°C for 3 min; denaturation at 95°C for 15 s, annealing at 52°C for 15 s, extension at 72°C for 30 s, and a total of 35 cycles; final extension at 72°C for 5 min. After the PCR reaction, the PCR product was subjected to gel electrophoresis in 2% agarose gel (mass volume fraction) at 120V for 30 min, and then photographed under an ultraviolet gel imager, and the results were recorded. The results showed that the size of the target fragments amplified by the primers, namely the BnHBBD-A07 and BnHBBD-C06 gene fragments, was about 231bp.
参照UNIQ-10柱式DNA胶回收试剂盒(购自生工生物工程(上海)股份有限公司)中操作说明,从琼脂糖凝胶中回收PCR扩增产物BnHBBD基因,然后将回收的PCR扩增产物BnHBBD基因连接到pMD19-T载体(购自宝生物工程(大连)有限公司)上,连接体系为:4.5μL胶回收产物、0.5μLpMD-19T载体、5μL Solution Ⅰ(购自宝生物工程(大连)有限公司),在16℃下连接过夜,得到连接产物。Referring to the operating instructions in the UNIQ-10 Column DNA Gel Recovery Kit (purchased from Sangon Bioengineering (Shanghai) Co., Ltd.), the PCR amplification product BnHBBD gene was recovered from the agarose gel, and then the recovered PCR amplification product was The BnHBBD gene was connected to the pMD19-T vector (purchased from Treasure Bioengineering (Dalian) Co., Ltd.), and the connection system was: 4.5 μL gel recovery product, 0.5 μL pMD-19T vector, 5 μL Solution Ⅰ (purchased from Treasure Bioengineering (Dalian) Co., Ltd. Co., Ltd.) at 16°C overnight to obtain the ligation product.
向30μL大肠杆菌感受态细胞(购自南京诺唯赞生物科技股份有限公司)中加入10μL的连接产物,通过热激法将连接产物转入大肠杆菌中,然后利用含终浓度为30mg/mL的Amp的LB培养基筛选阳性菌落,并挑取10个单菌落震荡培养12-16h,取2μL菌液作为模板PCR扩增进行鉴定,PCR反应的引物为:Add 10 μL of the ligation product to 30 μL Escherichia coli competent cells (purchased from Nanjing Novozyme Biotechnology Co., Ltd.), transfer the ligation product into E. coli by heat shock method, and then use Amp's LB medium screened positive colonies, picked 10 single colonies and cultured them with shaking for 12-16 hours, took 2 μL of bacterial liquid as a template for PCR amplification for identification, and the primers for the PCR reaction were:
M13-F(SEQ.ID.NO.15):TGTAAAACGACGGCCAGTM13-F (SEQ.ID.NO.15): TGTAAAACGACGGCCAGT
M13-R(SEQ.ID.NO.16):CAGGAAACAGCTATGACC。M13-R (SEQ. ID. NO. 16): CAGGAAACAGCTATGACC.
PCR扩增反应体系如表2所示,PCR反应程序为:94℃预变性3min;94℃变性30s、50℃退火30s、72℃延伸1min,共进行28个循环;72℃终延伸10min。The PCR amplification reaction system is shown in Table 2. The PCR reaction program was: pre-denaturation at 94°C for 3 min; denaturation at 94°C for 30 s, annealing at 50°C for 30 s, and extension at 72°C for 1 min, for a total of 28 cycles; final extension at 72°C for 10 min.
表2.菌液PCR扩增反应体系Table 2. Bacteria Liquid PCR Amplification Reaction System
PCR反应体系PCR reaction system 体积volume
ddH 2O ddH 2 O 6μL6μL
rTaqrTaq 10μL10 μL
上游引物(10μM)Upstream primer (10μM) 1μL1μL
下游引物(10μM)Downstream primer (10μM) 1μL1μL
菌液Bacteria 2μL2μL
将PCR扩增的结果在2%的琼脂糖凝胶上进行检测,检测发现得到的DNA片段为400bp左右,说明转化成功,选10份转化成功的菌液各吸取100μL送到生工生物工程(上海)股份有限公司测序。分析测序结果可得BnHBBD-A07和BnHBBD-C06序列,其核苷酸序列如SEQ.ID.NO.4和SEQ.ID.NO.5所示,氨基酸序列如SEQ.ID.NO.6和SEQ.ID.NO.7所示。The result of PCR amplification was detected on 2% agarose gel, and the DNA fragment obtained by detection was found to be about 400bp, indicating that the transformation was successful. Select 10 parts of successfully transformed bacterial solutions to draw 100 μL each and send them to Sangon Bioengineering ( Shanghai) Co., Ltd. sequencing. The sequence of BnHBBD-A07 and BnHBBD-C06 can be obtained by analyzing the sequencing results, the nucleotide sequences of which are shown in SEQ.ID.NO.4 and SEQ.ID.NO.5, and the amino acid sequences are shown in SEQ.ID.NO.6 and SEQ.ID.NO.6 .ID.NO.7 shown.
根据序列表比对发现BnHBBD-C06和BnHBBD-A07的核苷酸序列共相差4个碱基,这4个碱基在BnHBBD-C06和BnHBBD-A07中分别是第59位G→A、第129位T→C、第140位 T→A和第159位C→G。上述核苷酸的序列差异导致了2个氨基酸变化,这2个氨基酸在BnHBBD-C06和BnHBBD-A07中分别是第20位N→S和第47位H→L,比对示意图见图1。According to the sequence table comparison, it is found that the nucleotide sequences of BnHBBD-C06 and BnHBBD-A07 differ by 4 bases in total, and these 4 bases are the 59th G→A and the 129th in BnHBBD-C06 and BnHBBD-A07, respectively. Bit T→C, 140th bit T→A, and 159th bit C→G. The above-mentioned nucleotide sequence differences lead to two amino acid changes, which are N→S at position 20 and H→L at position 47 in BnHBBD-C06 and BnHBBD-A07, respectively. See Figure 1 for the comparison diagram.
实施例2:基于CRISPR/Cas9系统定向突变甘蓝型油菜基因BnHBBD-A07和BnHBBD-C06编辑载体的构建Example 2: Construction of BnHBBD-A07 and BnHBBD-C06 editing vectors for directed mutation of Brassica napus genes based on CRISPR/Cas9 system
将BnHBBD-A07和BnHBBD-C06基因序列提交到网站http://cbi.hzau.edu.cn/cgi-bin/CRISPR,筛选靶点,选取靶位点Target1和Target2,所述Target1序列为:5’-TACGATGGTTCTGCTCTGTC-3’(SEQ.ID.NO.1),Target2序列为5’-TGCAAGAATTGGAGCCACCG-3’(SEQ.ID.NO.2),把上述2个靶点序列分别连接到2个相同的sgRNA序列的5’端:[(20bptarget)GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGTCGGTGCTTTTTTT](SEQ.ID.NO.3),其中,(20bp target)分别为Target1和Target2的长度,使得建出的双靶点基因编辑载体pKSE401-BnHBBD-CRISPR可对目的序列敲除2次,保证产生有效编辑。Submit the BnHBBD-A07 and BnHBBD-C06 gene sequences to the website http://cbi.hzau.edu.cn/cgi-bin/CRISPR, screen the targets, and select the target sites Target1 and Target2, the Target1 sequence is: 5 '-TACGATGGTTCTGCTCTGTC-3'(SEQ.ID.NO.1), Target2 sequence is 5'-TGCAAGAATTGGAGCCACCG-3'(SEQ.ID.NO.2), connect the above two target sequences to two identical The 5' end of the sgRNA sequence: [(20bptarget)GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTATCAACTTGAAAAAGTGGCACCGAGTCGGTGCTTTTTTTTT](SEQ.ID.NO.3), where (20bp target) is the length of Target1 and Target2, making the double-target gene editing vector pKSE401-BnHBBD -CRISPR can knock out the target sequence twice to ensure effective editing.
根据筛选的靶点设计CRISPR/Cas9载体靶点引物,引物序列如表3所示,确保设计的2个靶点可以同时敲除BnHBBD-A07和BnHBBD-C06。Design CRISPR/Cas9 vector target primers according to the screened targets, and the primer sequences are shown in Table 3 to ensure that the two designed targets can simultaneously knock out BnHBBD-A07 and BnHBBD-C06.
表3.CRISPR/Cas9载体靶点引物Table 3. CRISPR/Cas9 Vector Target Primers
引物Primer 序列5’-3’Sequence 5'-3'
HBBD-DT1-F0(SEQ.ID.NO.9)HBBD-DT1-F0 (SEQ.ID.NO.9) TGTACGATGGTTCTGCTCTGTCGTTTTAGAGCTAGAAATAGCTGTACGATGGTTCTGCTCTGTCGTTTTGAGCTAGAAATAGC
HBBD-DT2-R0(SEQ.ID.NO.10)HBBD-DT2-R0 (SEQ.ID.NO.10) AACCGGTGGCTCCAATTCTTGCACAATCTCTTAGTCGACTCTACAACCGGTGGCTCCAATTCTTGCACAATCTCTTAGTCGACTCTAC
HBBD-DT1-Bs(SEQ.ID.NO.11)HBBD-DT1-Bs (SEQ.ID.NO.11) ATATATGGTCTCGATTGTACGATGGTTCTGCTCTGTCGTTATATATGGTCTCGATTGTACGATGGTTCTGCTCTGTCGTT
HBBD-DT2-BsR(SEQ.ID.NO.12)HBBD-DT2-BsR (SEQ.ID.NO.12) ATTATTGGTCTCGAAACCGGTGGCTCCAATTCTTGCACAAATTATTGGTCTCGAAACCGGTGGCTCCAATTCTTGCACAA
随后使用表3中的四种引物对模板入门载体pCBC-DT1T2(来自华中农业大学洪登峰老师)进行PCR扩增,PCR反应体系与表1中相同,PCR反应程序为:95℃预变性3min;95℃变性15s、52℃退火15s、72℃延伸30s,35个循环;72℃终延伸5min。其中引物HBBD-DT1-BsF和HBBD-DT2-BsR正常引物浓度10μM;HBBD-DT1-F0和HBBD-DT2-R0稀释20倍,引物浓度应为5μM,纯化回收上述PCR产物,该PCR产物的长度为626bp,然后建立酶切-连接反应体系,具体的反应体系如表4所示,反应条件为37℃保持5h,50℃保持5min,80℃保持10min。Then use the four primers in Table 3 to perform PCR amplification on the template entry vector pCBC-DT1T2 (from teacher Hong Dengfeng of Huazhong Agricultural University). The PCR reaction system is the same as that in Table 1. Denaturation at ℃ for 15s, annealing at 52℃ for 15s, extension at 72℃ for 30s, 35 cycles; final extension at 72℃ for 5min. The normal primer concentration of primers HBBD-DT1-BsF and HBBD-DT2-BsR is 10 μM; HBBD-DT1-F0 and HBBD-DT2-R0 are diluted 20 times, and the primer concentration should be 5 μM. Purify and recover the above PCR product, the length of the PCR product 626bp, and then set up the enzyme cleavage-ligation reaction system. The specific reaction system is shown in Table 4. The reaction conditions are 37°C for 5h, 50°C for 5min, and 80°C for 10min.
表4.酶切-连接反应体系Table 4. Digestion-ligation reaction system
成分Element 体积volume
PCR产物(626bp)PCR product (626bp) 2μL2μL
pKSE401 pKSE401 2μL2μL
10*NEB T4 Buffer10*NEB T4 Buffer 1.5μL1.5μL
10*BSA10*BSA 1.5μL1.5μL
Bsa I(NEB)Bsa I (NEB) 1μL1μL
T4 Ligase(NEB)/高浓度T4 Ligase(NEB)/high concentration 1μL1μL
ddH2OddH2O 6μL6μL
反应结束取5μL连接产物转化感受态大肠杆菌DH5α,使用含有50mg/mL Kan的固体LB平板培养基进行筛选,37℃过夜培养后,挑取阳性克隆在400μL含有50mg/mL Kan的液体LB培养基进行震荡培养4-6h,取2μL菌液作为模板PCR扩增进行鉴定,使用pKSE401载体上U6启动子中的序列设计鉴定引物,退火温度改为57℃,其他PCR扩增反应体系和条件与表2中菌液PCR扩增反应相同,具体引物序列如下所示:At the end of the reaction, take 5 μL of the ligation product and transform it into competent Escherichia coli DH5α, use solid LB plate medium containing 50 mg/mL Kan for screening, and after overnight culture at 37°C, pick positive clones in 400 μL liquid LB medium containing 50 mg/mL Kan Perform shaking culture for 4-6 hours, take 2 μL of the bacterial liquid as a template for PCR amplification for identification, use the sequence in the U6 promoter on the pKSE401 vector to design and identify primers, and change the annealing temperature to 57°C. Other PCR amplification reaction systems and conditions are as shown in the table 2. The PCR amplification reaction of the bacterial solution is the same, and the specific primer sequences are as follows:
U626-IDF:TGTCCCAGGATTAGAATGATTAGGC(SEQ.ID.NO.17)U626-IDF: TGTCCCAGGATTAGAATGATTAGGC (SEQ.ID.NO.17)
U629-IDR:AGCCCTCTTCTTTCGATCCATCAAC(SEQ.ID.NO.18);U629-IDR:AGCCCTCTTCTTTCGATCCATCAAC (SEQ.ID.NO.18);
经过PCR鉴定跑胶后得到的片段大小为726bp,吸取片段大小正确的阳性克隆菌液100μL送至生工生物工程(上海)股份有限公司进行测序,然后在pKSE401载体上U6启动子中的序列设计正向测序引物,引物序列如下:After PCR identification, the size of the fragment obtained after running the gel was 726bp. Take 100 μL of the positive clone liquid with the correct fragment size and send it to Sangon Bioengineering (Shanghai) Co., Ltd. for sequencing, and then design the sequence in the U6 promoter on the pKSE401 vector Forward sequencing primers, the primer sequences are as follows:
U626-IDF:TGTCCCAGGATTAGAATGATTAGGC(SEQ.ID.NO.17)U626-IDF: TGTCCCAGGATTAGAATGATTAGGC (SEQ.ID.NO.17)
U629-IDF:TTAATCCAAACTACTGCAGCCTGAC(SEQ.ID.NO.19);U629-IDF: TTAATCCAAACTACTGCAGCCTGAC (SEQ.ID.NO.19);
将测序结果中含有设计的2个靶点Target1和Target2的阳性克隆菌液进行扩大培养以提取质粒,从而获得pKSE401-BnHBBD-CRISPR质粒,最后将质粒转入农杆菌GV3101中,扩大培养并保菌以待使用。The positive clones containing the two designed targets Target1 and Target2 in the sequencing results were expanded and cultured to extract the plasmid, so as to obtain the pKSE401-BnHBBD-CRISPR plasmid, and finally the plasmid was transformed into Agrobacterium GV3101, expanded and cultured to preserve the bacteria. to be used.
图2为所选取的Target1和Target2靶点在基因上的位置示意图(a)与pKSE401-BnHBBD-CRISPR质粒中LB和RB范围内简略示意图(b)。图中,LB:左边界;RB:右边界;Kan:卡那霉素抗性基因;P-CaMV35S:CaMV35启动子;U6-26p-Target1-gRNA:包括启动子U6-26p、gRNA骨架结构和靶点1(Target1);U6-26p-Target2-gRNA:gRNA表达元件组,包括启动子U6-26p、gRNA骨架结构和靶点2(Target2);Cas9:根据密码子优化后的Cas9基因,所述Cas9基因来源于化脓性链球菌的序列并基于玉米密码子优化,所述密码子优化后的Cas9基因购自http://www.addgene.org/62202/。Figure 2 is a schematic diagram (a) of the positions of the selected Target1 and Target2 targets on the gene and a schematic diagram (b) of the LB and RB ranges in the pKSE401-BnHBBD-CRISPR plasmid. In the figure, LB: left border; RB: right border; Kan: kanamycin resistance gene; P-CaMV35S: CaMV35 promoter; U6-26p-Target1-gRNA: including promoter U6-26p, gRNA backbone structure and Target 1 (Target1); U6-26p-Target2-gRNA: gRNA expression element group, including promoter U6-26p, gRNA backbone structure and target 2 (Target2); Cas9: according to the Cas9 gene after codon optimization, the The Cas9 gene is derived from the sequence of Streptococcus pyogenes and based on maize codon optimization, and the codon-optimized Cas9 gene is purchased from http://www.addgene.org/62202/.
实施例3:pKSE401-BnHBBD-CRISPR基因编辑重组载体转化甘蓝型油菜(Brassica napus)Example 3: Transformation of Brassica napus with pKSE401-BnHBBD-CRISPR gene editing recombinant vector
A.播种:A. Sowing:
为了快速获得所需的油菜新种质,选取无需春化、可快速生长的甘蓝型油菜Y127种子(种子来自华中农业大学洪登峰老师),放在10mL离心管中,加入体积分数为75%的酒精, 上下翻转,浸泡1min,用移液器吸取酒精,加入适量无菌水冲洗3-5遍;再加入15%bleach溶液(配置为8.115mL无菌水+1.875mL次氯酸钠+10μL曲拉通),将离心管上下翻转,浸泡种子6min,污染较重的种子酒精消毒和灭菌的时间可以适当延长,但时间过长会影响种子发芽。随后吸掉消毒液,加入适量无菌水冲洗3-5遍,每次均上下翻转,保持离心管内为无菌环境。最后吸掉无菌水,用烧好的无菌镊子将灭菌种子播到M0培养基上,每瓶25粒左右,置于暗光24℃下培养6天,即可获得所需长度的油菜下胚轴。In order to quickly obtain the required new germplasm of rapeseed, select Brassica napus Y127 seeds that can grow quickly without vernalization (the seeds are from teacher Hong Dengfeng of Huazhong Agricultural University), put them in a 10mL centrifuge tube, and add alcohol with a volume fraction of 75% , turn it upside down, soak for 1min, absorb alcohol with a pipette, add an appropriate amount of sterile water to rinse 3-5 times; then add 15% bleach solution (8.115mL sterile water + 1.875mL sodium hypochlorite + 10μL triton), Turn the centrifuge tube upside down and soak the seeds for 6 minutes. The time for alcohol disinfection and sterilization of heavily polluted seeds can be extended appropriately, but too long time will affect the germination of the seeds. Then suck off the disinfectant, add an appropriate amount of sterile water to rinse 3-5 times, and turn it upside down each time to keep the centrifuge tube in a sterile environment. Finally, suck out the sterile water, sow the sterilized seeds on the M0 medium with the boiled sterile tweezers, about 25 seeds per bottle, and culture them under dark light at 24°C for 6 days to obtain rapeseed of the required length. hypocotyl.
B.菌液准备:B. Bacterial solution preparation:
播种5-7天后用液体LB培养实施例2中得到的含有pKSE401-BnHBBD-CRISPR质粒的农杆菌,具体培养方式如下:在5mL抗性LB(加入50mg/L Kan+50mg/L Gen+50mg/L Rif)中加入20μL含有pKSE401-BnHBBD-CRISPR质粒的农杆菌,于28℃、180-220rpm摇床中培养约14-16h。5-7 days after sowing, cultivate the Agrobacterium containing the pKSE401-BnHBBD-CRISPR plasmid obtained in Example 2 with liquid LB. Add 20 μL of Agrobacterium containing the pKSE401-BnHBBD-CRISPR plasmid to L Rif), and incubate for about 14-16 hours at 28°C in a shaker at 180-220rpm.
由于农杆菌在培养液中繁殖速度与其活性有关,而在对数期繁殖状态下的农杆菌活力最好,最易侵染植物,所以要严格计算好接菌时间。选择间隔2h重复接菌,如分别18:00、20:00接菌,次日早8:00挑选合适浓度,能够防止出现细菌浓度过高的情况。摇菌之前要挑选阳性单菌落在抗性平板上接种细菌,28℃下培养48h,等到阳性细菌在平板上繁殖出单菌落后用10μL枪头吸取该单菌落在培养液中反复吹打几次,使得菌均匀生长。Since the propagation speed of Agrobacterium in the culture medium is related to its activity, and the Agrobacterium in the logarithmic phase has the best vigor and is most likely to infect plants, so the inoculation time must be strictly calculated. Choose repeated inoculation intervals of 2 hours, such as inoculation at 18:00 and 20:00 respectively, and select an appropriate concentration at 8:00 the next morning, which can prevent excessive bacterial concentration. Before shaking the bacteria, select a positive single colony to inoculate the bacteria on the resistant plate, and incubate at 28°C for 48 hours. After the positive bacteria reproduce a single colony on the plate, use a 10 μL pipette tip to absorb the single colony and repeatedly blow it in the culture medium several times. make the bacteria grow evenly.
C.侵染及共培养:C. Infection and co-culture:
准备好共培养培养基M1和DM液,M1培养基经过121℃15min灭菌后快冷却(约50℃)时快冷却时(约50℃)加入乙酰丁香酮AS(终浓度100μM),DM液也加入AS(终浓度100μM),记为DM(AS +),备用。 Prepare the co-cultivation medium M1 and DM solution. The M1 medium is sterilized at 121°C for 15 minutes and then cooled rapidly (about 50°C). AS was also added (final concentration 100 μM), recorded as DM (AS + ), and set aside.
采用分光光度计测步骤B中所述的LB培养基中菌的OD值,选取OD值为0.4左右时的菌液较好,一般摇菌14-16小时即可。吸取2mL培养好的菌液到无菌离心管中,3000rpm 3min离心,弃上清;然后加入2mL DM(AS +)液悬浮,3000rpm 3min离心,弃上清;再加入2mL的DM(AS +)液悬浮,放4℃冰箱备用。 Use a spectrophotometer to measure the OD value of the bacteria in the LB medium described in step B. It is better to select the bacterial solution with an OD value of about 0.4, and generally shake the bacteria for 14-16 hours. Draw 2mL of the cultured bacterial solution into a sterile centrifuge tube, centrifuge at 3000rpm for 3min, discard the supernatant; then add 2mL of DM (AS + ) solution to suspend, centrifuge at 3000rpm for 3min, discard the supernatant; then add 2mL of DM(AS + ) Suspended in liquid, put in refrigerator at 4°C for later use.
用无菌解剖剪刀剪取步骤A播种后生长出来的油菜下胚轴,切成0.8cm-1.0cm的小段,放在含有18mL的DM液体的培养皿中,等下胚轴全部切成小段后,再倒入2mL上述用DM(AS +)液重悬后的菌液,这时皿里液体体积为20mL,浸染10-15min(时间不能长,不然外植体易死亡),隔段时间摇晃1次,4~5次即可。当侵染8min时开始用移液器吸掉DM(AS +)菌液,用无菌镊子夹取外植体到无菌滤纸上放置片刻,吸走外植体上多余的菌液,然后将外植体再转到M1固体培养基中,外植体暗光下24℃放置或放在光照培养室避光处。 Use sterile dissecting scissors to cut the rape hypocotyls grown after sowing in step A, cut them into small pieces of 0.8cm-1.0cm, put them in a petri dish containing 18mL of DM liquid, wait until the hypocotyls are all cut into small pieces , and then pour 2mL of the bacteria solution resuspended with DM (AS + ) solution above, at this time the volume of the liquid in the dish is 20mL, soak for 10-15min (the time should not be long, otherwise the explants will easily die), and shake it at intervals 1 time, 4 to 5 times. When infecting for 8 minutes, start to suck off the DM (AS + ) bacterial solution with a pipette, use sterile tweezers to clamp the explants and place them on sterile filter paper for a while, suck away the excess bacterial solution on the explants, and then put The explants were then transferred to the M1 solid medium, and the explants were placed at 24°C in the dark or in a dark place in a light culture room.
D.选择培养及愈伤诱导:D. Selection culture and callus induction:
将在M1培养基中培养36-48h的外植体转入到M2培养基中,光下正常培养,培养条件为24℃条件下,采用白天16h、晚上8h的方式交替培养,2-3周诱导愈伤。Transfer the explants cultured in the M1 medium for 36-48 hours to the M2 medium, and culture them normally under the light at 24°C, and alternately cultivate them for 16 hours during the day and 8 hours at night for 2-3 weeks Induce healing.
E.再分化:E. Redifferentiation:
将外植体转到M3培养基中,每2-3星期继代一次,直至出现绿芽。Transfer the explants to M3 medium and subculture every 2-3 weeks until green shoots appear.
F.生根培养F. Rooting culture
将有完整生长点的绿芽转入M4培养基中长大生根,约需要20天。生根后,可以直接放置培养间进行炼苗,待苗状态稳定后,从培养基中取出,取苗过程中不要破坏植物的根系,然后将苗移到土壤中培养,培养时需要用保鲜膜保湿1-2周,即可获得等待鉴定的转基因油菜。The green shoot that will have complete growth point is transferred in the M4 medium and grows up and takes root, needs about 20 days. After rooting, it can be directly placed in the cultivation room for seedling hardening. After the seedlings are in a stable state, take them out of the medium. Do not damage the root system of the plant during the seedling taking process, and then move the seedlings to the soil for cultivation. During cultivation, they need to be kept moist with plastic wrap In 1-2 weeks, the transgenic rape waiting to be identified can be obtained.
实施例4:转基因甘蓝型油菜的鉴定以及基因编辑位点检测Example 4: Identification of transgenic Brassica napus and detection of gene editing sites
待实施例3中的转基因油菜植株生长稳定后,采取CTAB法提取转基因油菜叶片中的DNA,具体步骤如下:After the growth of the transgenic rapeseed plant in Example 3 is stable, the DNA in the transgenic rapeseed leaf is extracted by the CTAB method, and the specific steps are as follows:
A.取少量叶片放入1.5mL离心管中,使用液氮进行研磨,研磨成干粉后,加入600μL CTAB,然后将样品放入65℃水浴锅中孵育60min。A. Take a small amount of leaves and put them into a 1.5mL centrifuge tube, grind them with liquid nitrogen, and then add 600μL CTAB, then put the samples in a 65℃ water bath and incubate for 60min.
B.等待孵育完成后,在管中加入600μL氯仿/异戊醇(体积比为24:1)溶液,剧烈震荡,充分除去蛋白质,然后放入离心机中12000g离心10min。B. After the incubation is completed, add 600 μL of chloroform/isoamyl alcohol (volume ratio 24:1) solution to the tube, shake vigorously to fully remove the protein, and then put it in a centrifuge for 10 minutes at 12000g.
C.离心后轻轻取出离心管,此时溶液分为三层,依次是水相、叶片碎片杂质层、有机相,吸取400-500μL上清水相,转移到新的离心管中,然后向上清中加入400-500μL异丙醇,轻轻颠倒混匀,接着将样品放入-20℃冰箱中冷却至少10min,以使异丙醇更加有效沉淀DNA。C. Gently take out the centrifuge tube after centrifugation. At this time, the solution is divided into three layers, which are the water phase, the leaf debris impurity layer, and the organic phase. Take 400-500 μL of the supernatant water phase and transfer it to a new centrifuge tube, and then supernatant Add 400-500 μL of isopropanol to the sample, invert and mix gently, and then place the sample in a -20°C refrigerator to cool for at least 10 minutes, so that isopropanol can precipitate DNA more effectively.
D.将离心管放入离心机中,室温下12000g离心10min。D. Put the centrifuge tube into the centrifuge and centrifuge at 12000g for 10min at room temperature.
E.离心后弃上清,加入700μL预冷的体积分数为70%乙醇洗涤,弹起沉淀,轻轻颠倒洗涤,12000g瞬旋。E. Discard the supernatant after centrifugation, add 700 μL of pre-cooled 70% ethanol to wash, pop up the precipitate, gently invert to wash, and spin at 12000g.
F.离心后弃上清,用移液器吸去乙醇溶液,然后在超净台风干沉淀,去除挥发性有机溶液。F. Discard the supernatant after centrifugation, absorb the ethanol solution with a pipette, and then dry the precipitate in an ultra-clean typhoon to remove the volatile organic solution.
G.向离心管中加入50-100μL ddH 2O溶解沉淀,放入37℃水浴锅中30min,得到基因组样品。 G. Add 50-100 μL ddH 2 O to the centrifuge tube to dissolve the precipitate, put it in a 37° C. water bath for 30 minutes, and obtain the genome sample.
H.取1μL基因组样品测定浓度,检测合格后,将基因组样品放入-20℃冰箱中备用。 H. Take 1 μL of the genome sample to measure the concentration. After passing the test, put the genome sample into a -20°C refrigerator for later use.
将上述步骤中得到的基因组样品为模板,pKSE401-BnHBBD-CRISPR质粒为正对照,以未经过遗传转化的受体材料DNA和ddH 2O为负对照,进行PCR鉴定,根据pKSE401载体上的U6启动子和Cas9蛋白序列设计鉴定引物(使用2对引物同时对待鉴定的转基因油菜基因组进行鉴定,以保证结果的可信度)退火温度分别为57℃和62℃,其他PCR扩增反应程序 以及条件与表2菌液PCR反应相同,引物序列如下: Use the genomic sample obtained in the above steps as a template, the pKSE401-BnHBBD-CRISPR plasmid as a positive control, and the untransformed recipient material DNA and ddH 2 O as a negative control for PCR identification. Identification primers were designed for the Cas9 protein sequence and Cas9 protein sequence (two pairs of primers were used to identify the transgenic rapeseed genome to be identified at the same time to ensure the credibility of the results). The annealing temperatures were 57°C and 62°C, respectively. The bacterial liquid PCR reaction of table 2 is the same, and the primer sequences are as follows:
引物组1:扩增片段长度为726bpPrimer set 1: the length of the amplified fragment is 726bp
U626-IDF:TGTCCCAGGATTAGAATGATTAGGC(SEQ.ID.NO.17)U626-IDF: TGTCCCAGGATTAGAATGATTAGGC (SEQ.ID.NO.17)
U629-IDR:AGCCCTCTTCTTTCGATCCATCAAC(SEQ.ID.NO.18);U629-IDR:AGCCCTCTTCTTTCGATCCATCAAC (SEQ.ID.NO.18);
引物组2:扩增片段长度为701bpPrimer set 2: the length of the amplified fragment is 701bp
Cas9-F:TGCAGGAGATTTTCTCCAACGA(SEQ.ID.NO.20)Cas9-F: TGCAGGAGATTTTTCTCCAACGA (SEQ.ID.NO.20)
Cas9-R:AGCCTTCGTAATCTCGGTGTTCA(SEQ.ID.NO.21)Cas9-R: AGCCTTCGTAATCTCGGTGTTCA (SEQ.ID.NO.21)
待PCR完成后,将扩增产物在1%的琼脂糖凝胶中进行电泳,使用紫外凝胶成像仪照相,记录结果。图3为经过转化得到2株阳性株中提取叶片基因组的PCR鉴定胶图;图中,WT:野生型;hbbd-1、hbbd-2:突变体转基因植株;+:正对照,pKSE401-BnHBBD-CRISPR质粒;-:负对照,ddH2O;Marker:Takara DL2000 DNA Marker。After the PCR is completed, electrophoresis is performed on the amplified product in 1% agarose gel, and the results are recorded by using a UV gel imager to take pictures. Figure 3 is the gel map of PCR identification of leaf genome extracted from two positive plants obtained through transformation; in the figure, WT: wild type; hbbd-1, hbbd-2: mutant transgenic plants; +: positive control, pKSE401-BnHBBD- CRISPR plasmid; -: negative control, ddH2O; Marker: Takara DL2000 DNA Marker.
图中可以证实实施例3中所构建的基因编辑载体成功转入到油菜中,确定通过植物组织培养的过程,获得了鉴定成功的阳性株。It can be confirmed in the figure that the gene editing vector constructed in Example 3 was successfully transformed into rapeseed, and it was confirmed that through the process of plant tissue culture, a positive strain with successful identification was obtained.
为了进一步确定的阳性株所发生的基因编辑情况,需要将上述鉴定成功的阳性株的基因组,使用高保真酶对BnHBBD-A07和BnHBBD-C06进行PCR扩增、跑胶、胶回收以及连接pMD19-T载体,转化大肠杆菌,挑菌鉴定,送单克隆菌液至生工生物工程(上海)股份有限公司进行测序,具体实验操作及方法与实施例1中相同。In order to further confirm the gene editing of the positive strains, it is necessary to use high-fidelity enzymes to perform PCR amplification, gel running, gel recovery, and ligation of pMD19- T vector, transform Escherichia coli, pick and identify the bacteria, and send the monoclonal bacterial liquid to Sangon Bioengineering (Shanghai) Co., Ltd. for sequencing. The specific experimental operation and method are the same as in Example 1.
对得到的测序结果进行分析,测序结果如图4所示,并将测序结果与实施例1中得到的BnHBBD-A07和BnHBBD-C06野生型真实测序结果进行比对分析,可以发现较多的单克隆在靶点1处表现出T碱基的插入,故此对其进行进一步分析,分析结果见图5。The obtained sequencing results were analyzed, as shown in Figure 4, and the sequencing results were compared with the real sequencing results of BnHBBD-A07 and BnHBBD-C06 wild type obtained in Example 1, and more single The clone showed the insertion of a T base at the target site 1, so it was further analyzed, and the analysis results are shown in Figure 5.
图5为hbbd突变体靶点1处T插入导致的移码突变简析示意图;图中(a)为与野生型相比突变体中BnHBBD-A07基因发生的改变;(b)为与野生型相比突变体中BnHBBD-C06基因发生的改变。从图中可以看出,hbbd突变体的BnHBBD-A07和BnHBBD-C06基因中均会发生移码突变,导致HBBD基因翻译过程中的提前终止,HBBD蛋白不能正常合成,这可以证实基因编辑载体成功在目的靶点行使功能,成功敲除甘蓝型油菜中BnHBBD-A07和BnHBBD-C06基因。Figure 5 is a schematic diagram of the frameshift mutation caused by the T insertion at the target point 1 of the hbbd mutant; (a) in the figure is the change of the BnHBBD-A07 gene in the mutant compared with the wild type; (b) is the change compared with the wild type Compared with the changes in the BnHBBD-C06 gene in the mutant. It can be seen from the figure that frameshift mutations occur in the BnHBBD-A07 and BnHBBD-C06 genes of the hbbd mutant, resulting in premature termination of the HBBD gene translation process, and HBBD protein cannot be synthesized normally, which can confirm the success of the gene editing vector Exercising function at the target site, successfully knocking out the BnHBBD-A07 and BnHBBD-C06 genes in Brassica napus.
实施例5:转基因甘蓝型油菜的花器官不脱落表型分析Example 5: Analysis of non-shedding phenotype of flower organs of transgenic Brassica napus
将实施例4中验证成功的hbbd突变体放置于16h光照,8h黑暗,相对湿度70%的培养箱中进行生长,待进入花期后,对野生型(甘蓝型油菜Y127,来自华中农业大学洪登峰老师)和突变体进行观察并记录花瓣脱落情况。本实验进行3次生物学重复,花器官附着情况是指不受外力影响的自然脱落情况,具体时间从花蕾开放到完全脱落,结果如表5所示。Place the successfully verified hbbd mutant in Example 4 in an incubator with 16 hours of light, 8 hours of darkness, and a relative humidity of 70%. ) and mutants to observe and record the petal shedding. Three biological repetitions were carried out in this experiment. The attachment of flower organs refers to the natural shedding situation not affected by external force. The specific time is from flower bud opening to complete shedding. The results are shown in Table 5.
表5.花器官附着情况统计表Table 5. Statistical table of flower organ attachment
株系名称Strain name 调查花器官数量Investigate the number of flower organs 花器官附着状况(天)Attachment status of floral organs (days)
WT WT 1010 5±0.55±0.5
hbbd-1hbbd-1 1212
hbbd-2hbbd-2 1010
hbbd-3hbbd-3 1111
图6为野生型(a)与hbbd突变体花器官不脱落表型(b)的花期对比图,可以明显发现突变体花器官附着在脱离区,并且经过表5统计可以发现,hbbd突变体的花器官在不受外力的作用下,从花蕾期、初开期、盛花期、授粉期、成熟期,均可以持续的存在。图7为hbbd突变体3个不同株系的花器官不脱落表型(hbbd)与野生型(WT)的角果成熟期对比图。从图中可以看出,花器官的颜色从黄色逐步转变为白色,哪怕是角果生长期、角果成熟期,花器官不脱落的表型将会一直持续。图8为hbbd突变体型(hbbd)与野生型(WT)的花序时期对比图,图中数字代表油菜花序的位置编号,花苞开放的第一朵花编号为1,第二朵花编号为2,依次类推。从图中可以看出,按照花序的位置,进行标花,可以更加明显的看出花器官不脱离的表型。Figure 6 is a comparison of the flowering period of the wild type (a) and the hbbd mutant's floral organ non-shedding phenotype (b), it can be clearly found that the mutant's floral organ is attached to the detachment area, and through the statistics of Table 5, it can be found that the hbbd mutant's Under the influence of no external force, flower organs can continue to exist from the flower bud stage, early bloom stage, full flower stage, pollination stage, and mature stage. Fig. 7 is a comparison chart of the silique maturity period of the flower organ non-shedding phenotype (hbbd) and the wild type (WT) of three different lines of the hbbd mutant. It can be seen from the picture that the color of the flower organs gradually changes from yellow to white, and even in the silique growth period and the silique mature stage, the phenotype that the flower organs will not fall off will continue. Figure 8 is a comparison of inflorescence stages between the hbbd mutant type (hbbd) and the wild type (WT). The numbers in the figure represent the position numbers of the rapeseed inflorescences. And so on. It can be seen from the figure that if the flower is marked according to the position of the inflorescence, the phenotype that the flower organ does not detach can be seen more clearly.
由于自然界中核盘菌的子囊孢子飘落在花瓣上,随着野生型花器官的脱落,飘落在叶或茎处时,核盘菌的菌丝开始生长,形成侵染环境,病情严重时,会在茎中形成菌核,此时油菜的茎会由于核盘菌的侵染变得中空,从而导致整株植物死亡,带来极大的经济损失。图9为在自然情况下,核盘菌侵染hbbd突变体与野生型发病途径对比示意图。从图中可以看出,hbbd突变体的花器官不脱落,飘落在花器官上的子囊孢子不会生长。As the ascospores of Sclerotinia in nature fall on the petals, as the wild-type flower organs fall off, when they fall on the leaves or stems, the hyphae of Sclerotinia begin to grow and form an infection environment. The sclerotium is formed in the stem, and the stem of rape will become hollow due to the infection of Sclerotinia sclerotiorum, which will cause the death of the whole plant and bring great economic losses. Fig. 9 is a schematic diagram showing the comparison of pathogenesis pathways of S. sclerotiorum infecting hbbd mutant and wild type under natural conditions. It can be seen from the figure that the floral organ of the hbbd mutant does not fall off, and the ascospores floating on the floral organ will not grow.
本实施例中还在培养箱环境中测试了hbbd突变体花器官不脱落对菌核病的避病表型,具体测试方法为:将由试验田中分离得到的核盘菌菌核接种在PDA固体培养皿中,28℃倒置培养6天,等到菌丝生长到培养皿的边缘后,取边缘处0.3cm*0.3cm的菌叠分别接种到3株野生型和3株突变体的花瓣上,每株接种6处花瓣,然后将接种后的植株均放置在人工气候箱(购买自上海一恒科学仪器有限公司)中进行培养,为了模拟自然条件,所述培养条件为温度22℃、湿度90%、12h弱光照、12h黑暗培养,每12h观察菌丝生长情况。。。花瓣上接种核盘菌后发病情况统计如表6所示。In the present embodiment, the hbbd mutant flower organ is also tested in the incubator environment to avoid the disease phenotype of Sclerotinia sclerotiorum, and the specific test method is: inoculate the Sclerotinia sclerotia obtained by separating in the test field on PDA solid culture In the dish, cultured upside down at 28°C for 6 days. After the hyphae grow to the edge of the dish, take a 0.3cm*0.3cm stack of bacteria from the edge and inoculate them on the petals of 3 wild-type and 3 mutant strains respectively. 6 petals were inoculated, and then the inoculated plants were placed in an artificial climate box (purchased from Shanghai Yiheng Scientific Instrument Co., Ltd.) for cultivation. In order to simulate natural conditions, the cultivation conditions were 22° C. of temperature, 90% humidity, 12h weak light, 12h dark culture, every 12h to observe the growth of mycelia. . . Table 6 shows the statistics of the disease after inoculation of S. sclerotiorum on the petals.
表6.花瓣上接种核盘菌后发病情况统计表Table 6. Statistical table of the incidence of sclerotinia after inoculation on the petals
株系名称Strain name 接种花瓣数量Number of petals to inoculate 接种后发病数量Number of cases after vaccination
WT-1WT-1 66 66
WT-2WT-2 66 55
WT-3WT-3 66 55
hbbd-1hbbd-1 66 11
hbbd-2hbbd-2 66 00
hbbd-3hbbd-3 66 00
表6为花瓣上接种核盘菌后发病情况统计表,从表中可以看出,核盘菌侵染hbbd突变体与野生型WT后,野生型WT的花瓣接种后基本都发病了,而hbbd突变体接种后基本没有发病。Table 6 is a statistical table of the incidence of Sclerotinia sclerotiorum on the petals. It can be seen from the table that after S. sclerotiorum infects the hbbd mutant and wild-type WT, the petals of the wild-type WT basically all fell ill after inoculation, while hbbd The mutants were basically free of disease after inoculation.
图10为培养箱环境下核盘菌侵染hbbd突变体与野生型WT发病情况对比示意图,其中图中(a)与(c)的小箭头处为核盘菌接种位置,(b)为长箭头代表野生型花瓣脱落至叶片上,(d)为长箭头与叉号代表突变体花瓣不脱落至叶片上,dpi(day of post-inoculation),0dpi和4dpi代表接种核盘菌0天和4天。从图中可以看出,野生型WT的花瓣会脱落,极大概率会带着已经开始生长的核盘菌脱离并附着在叶片上,核盘菌持续侵染使得植物叶片成腐烂状,造成了极大的病害;而hbbd突变体花器官不脱落,且处于植株的顶层,湿度不高,通风较好,核盘菌不易生长,没有发病现象,植物正常生长,不会被核盘菌的侵染,造成植株的死亡。Figure 10 is a schematic diagram of the comparison of the incidence of hbbd mutants and wild-type WT infected by S. Arrows represent wild-type petals shedding on leaves, (d) long arrows and crosses represent mutant petals not falling on leaves, dpi (day of post-inoculation), 0dpi and 4dpi represent 0 days and 4 days of inoculation with Sclerotinia sclerotiorum sky. It can be seen from the figure that the petals of wild-type WT will fall off, and with a high probability, the sclerotinia that has started to grow will detach and attach to the leaves. The continuous infection of sclerotinia makes the leaves of the plant rotten, resulting in Great disease; while the hbbd mutant flower organ does not fall off, and is in the top layer of the plant, the humidity is not high, the ventilation is better, the sclerotinia is not easy to grow, there is no disease phenomenon, the plant grows normally, and will not be invaded by the sclerotinia infection, resulting in plant death.
图11为接种核盘菌后发病数量统计图,经过t检验,P<0.001,可以看出突变体hbbd的花瓣发病数量与野生型WT相比,显著降低。Figure 11 is a statistical chart of the number of diseased petals after inoculation with Sclerotinia sclerotiorum. After the t test, P<0.001, it can be seen that the number of diseased petals of the mutant hbbd is significantly lower than that of the wild-type WT.
本实施例中还测试了hbbd突变体与野生型角果开裂力,具体测试步骤如下:取野生型和hbbd突变体开花后40天的共10个成熟角果,放置于温度25℃、湿度50%的环境一周,然后用胶水把角果粘在薄板上,使得油菜角果假隔膜所在平面平行于木板平面,角果的尾部与木板边沿对齐,角果柄处于木板之外。使用TA.XT Plus物性仪(英国Stable Micro System公司)把L形钩固定在探头上,在垂直于平板的方向于角果基部钩住固定在平板上角果和果柄的结合处。测定时用手压住平板,以1mm/min的速率匀速向上运动,当接触到角果柄时,转为0.5mm/min的速率匀速向上运动,拉开角果,同时记录野生型和突变体的拉裂力数据。In this example, the hbbd mutant and wild-type siliques were also tested for cracking force. The specific test steps are as follows: take a total of 10 mature siliques of the wild-type and hbbd mutant 40 days after flowering, and place them in a temperature of 25°C and a humidity of 50°C. % environment for one week, then stick the siliques on the thin board with glue, so that the plane where the rape silique pseudo-diaphragm is located is parallel to the plane of the plank, the tail of the silique is aligned with the edge of the plank, and the silique stalk is outside the plank. Use the TA.XT Plus physical property analyzer (UK Stable Micro System Company) to fix the L-shaped hook on the probe, hook the silique base in the direction perpendicular to the plate, and fix it on the joint of the silique and the stalk on the plate. During the measurement, press the plate with your hand and move upward at a constant speed of 1mm/min. When it touches the silique stalk, turn to move upward at a constant speed of 0.5mm/min, pull the silique, and record the wild type and mutant at the same time tear force data.
角果开裂前,受到的力不断增加,角果开裂后,受到的力突然减小,受力峰值即为角果开裂力的最大拉裂力数据,峰值越大,角果抗裂角能力越大。图12为突变体(hbbd)与野生型(WT)角果开裂力测定图,从图中可以看出,野生型角果最大拉裂力数据在0.3-0.5N左右,突变体角果最大拉裂力数据在0.6-0.8N左右,经过t检验,P<0.05,突变体和野生型相比拉裂力显著增加,即角果抗裂角能力增强。Before the siliques crack, the force received is continuously increasing, and after the siliques are cracked, the force received is suddenly reduced. The peak value of the force is the maximum cracking force data of the silique cracking force. The larger the peak value, the better the silique resistance big. Figure 12 is the measurement diagram of the cracking force of mutant (hbbd) and wild type (WT) siliques. It can be seen from the figure that the maximum cracking force data of wild type siliques is about 0.3-0.5N, and the maximum tensile force of mutant siliques is The cracking force data is about 0.6-0.8N. After the t test, P<0.05, the cracking force of the mutant is significantly increased compared with the wild type, that is, the ability of the silique to resist cracking is enhanced.
上述实验结果可以说明甘蓝型油菜中HBBD蛋白也是调控花器官脱落的重要蛋白质之一,为延长花期、抗菌核病和机械化收割提供了一定的利用资源。The above experimental results can show that the HBBD protein in Brassica napus is also one of the important proteins that regulate the shedding of floral organs, and it provides certain utilization resources for prolonging the flowering period, anti-sclerotinia and mechanized harvesting.
以上显示和描述了本发明的基本原理、主要特征以及本发明的优点。本行业的技术人员应该了解,本发明不受上述实施例的限制,上述实施例和说明书中描述的只是说明本发明的 原理,在不脱离本发明精神和范围的前提下,本发明还会有各种变化和改进,这些变化和改进都落入要求保护的本发明范围内。本发明要求保护范围由所附的权利要求书及其等效物界定。The basic principles, main features and advantages of the present invention have been shown and described above. Those skilled in the industry should understand that the present invention is not limited by the above-mentioned embodiments. What are described in the above-mentioned embodiments and the description only illustrate the principle of the present invention. Without departing from the spirit and scope of the present invention, the present invention will also have Variations and improvements are possible, which fall within the scope of the claimed invention. The protection scope of the present invention is defined by the appended claims and their equivalents.

Claims (12)

  1. 一种用于甘蓝型油菜BnHBBD基因定点突变的CRISPR/Cas9系统序列元件组,其特征在于,所述序列元件组包括U6-26p-Target1-gRNA、U6-26p-Target2-gRNA和根据密码子优化后的Cas9基因;所述U6-26p-Target1-gRNA包括启动子U6-26p,gRNA骨架结构和Target1;所述U6-26p-Target2-gRNA包括启动子U6-26p,gRNA骨架结构,Target2;A CRISPR/Cas9 system sequence element group for site-directed mutation of Brassica napus BnHBBD gene, characterized in that, the sequence element group includes U6-26p-Target1-gRNA, U6-26p-Target2-gRNA and according to codon optimization After the Cas9 gene; the U6-26p-Target1-gRNA includes promoter U6-26p, gRNA backbone structure and Target1; the U6-26p-Target2-gRNA includes promoter U6-26p, gRNA backbone structure, Target2;
    其中,所述甘蓝型油菜BnHBBD基因包括BnHBBD-C06和BnHBBD-A07,所述Target1为基因BnHBBD-C06的靶点序列,所述-Target2为基因BnHBBD-A07的靶点序列。Wherein, the Brassica napus BnHBBD gene includes BnHBBD-C06 and BnHBBD-A07, the Target1 is the target sequence of the gene BnHBBD-C06, and the -Target2 is the target sequence of the gene BnHBBD-A07.
  2. 根据权利要求1所述的用于甘蓝型油菜BnHBBD基因定点突变的CRISPR/Cas9系统序列元件组,其特征在于,所述Target1的核苷酸序列如SEQ.ID.NO.1所示;The CRISPR/Cas9 system sequence element set for site-directed mutation of Brassica napus BnHBBD gene according to claim 1, wherein the nucleotide sequence of the Target1 is as shown in SEQ.ID.NO.1;
    所述Target2的核苷酸序列如SEQ.ID.NO.2所示;The nucleotide sequence of the Target2 is shown in SEQ.ID.NO.2;
    所述sgRNA的核苷酸序列如SEQ.ID.NO.3所示。The nucleotide sequence of the sgRNA is shown in SEQ.ID.NO.3.
  3. 根据权利要求1所述的用于甘蓝型油菜BnHBBD基因定点突变的CRISPR/Cas9系统序列元件组,其特征在于,The CRISPR/Cas9 system sequence element set for site-directed mutation of Brassica napus BnHBBD gene according to claim 1, characterized in that,
    BnHBBD-C06的核苷酸序列如SEQ.ID.NO.4所示,氨基酸序列如SEQ.ID.NO.6所示;The nucleotide sequence of BnHBBD-C06 is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ.ID.NO.6;
    BnHBBD-A07的核苷酸序列如SEQ.ID.NO.5所示,氨基酸序列如SEQ.ID.NO.7所示。The nucleotide sequence of BnHBBD-A07 is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7.
  4. 一种基因编辑载体pKSE401-BnHBBD-CRISPR,其特征在于,所述基因编辑载体包含权利要求1~3任一项所述的用于甘蓝型油菜BnHBBD基因定点突变的CRISPR/Cas9系统序列元件组。A gene editing vector pKSE401-BnHBBD-CRISPR, characterized in that the gene editing vector comprises the CRISPR/Cas9 system sequence element set for site-directed mutation of Brassica napus BnHBBD gene according to any one of claims 1 to 3.
  5. 一种用于甘蓝型油菜BnHBBD基因定点突变的基因工程菌,其特征在于,所述基因工程菌采用权利要求4所述的基因编辑载体pKSE401-BnHBBD-CRISPR转化宿主细菌得到。A genetically engineered bacterium for site-directed mutation of Brassica napus BnHBBD gene, characterized in that the genetically engineered bacterium is obtained by transforming a host bacterium with the gene editing vector pKSE401-BnHBBD-CRISPR according to claim 4.
  6. 一种用于甘蓝型油菜BnHBBD基因定点突变的试剂盒,其特征在于,所述试剂盒包括权利要求4所述的基因编辑载体或权利要求5所述的基因工程菌。A kit for site-directed mutation of Brassica napus BnHBBD gene, characterized in that the kit includes the gene editing vector according to claim 4 or the genetically engineered bacterium according to claim 5.
  7. 权利要求1-3任一所述的序列元件组、权利要求4所述的基因编辑载体pKSE401-BnHBBD-CRISPR、权利要求5所述的基因工程菌或权利要求6所述的试剂盒的应用,其特征在于,所述应用包括:The application of the sequence element group described in any one of claims 1-3, the gene editing vector pKSE401-BnHBBD-CRISPR described in claim 4, the genetically engineered bacteria described in claim 5, or the kit described in claim 6, It is characterized in that the application includes:
    A)在甘蓝型油菜基因BnHBBD-C06和/或基因BnHBBD-A07定点突变中的应用,所述BnHBBD-C06基因的核苷酸序列如SEQ.ID.NO.4所示,氨基酸序列如SEQ.ID.NO.6所示,所述BnHBBD-A07基因的核苷酸序列如SEQ.ID.NO.5所示,氨基酸序列如SEQ.ID.NO.7所示;A) Application in Brassica napus gene BnHBBD-C06 and/or gene BnHBBD-A07 site-directed mutation, the nucleotide sequence of the BnHBBD-C06 gene is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ. As shown in ID.NO.6, the nucleotide sequence of the BnHBBD-A07 gene is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7;
    B)在具有长开花期的甘蓝型油菜育种中的应用;和/或B) use in the breeding of Brassica napus with a long flowering period; and/or
    C)在具有抗菌核病的甘蓝型油菜育种中的应用;和/或C) application in the breeding of Brassica napus with anti-sclerotinia; and/or
    D)在具有角果不易开裂的甘蓝型油菜育种中的应用。D) Application in the breeding of Brassica napus with siliques that are not easy to crack.
  8. 一种利用CIRSPR/Cas9系统对甘蓝型油菜BnHBBD基因定点突变的方法,其特征在 于,包括:A method for site-directed mutation of Brassica napus BnHBBD gene utilizing CIRSPR/Cas9 system, is characterized in that, comprising:
    (1)针对甘蓝型油菜中的BnHBBD基因设计筛选靶点Target1和Target2,并设计sgRNA序列,将2个靶点Target1和Target2分别与sgRNA序列连接,构建出双靶点基因编辑载体pKSE401-BnHBBD-CRISPR;(1) Design screening targets Target1 and Target2 for the BnHBBD gene in Brassica napus, and design sgRNA sequences, connect the two targets Target1 and Target2 to the sgRNA sequences respectively, and construct the dual-target gene editing vector pKSE401-BnHBBD- CRISPR;
    (2)将基因编辑载体pKSE401-BnHBBD-CRISPR转化农杆菌GV3101,得到含有基因编辑表达载体pKSE401-BnHBBD-CRISPR的农杆菌;(2) Transforming the gene editing vector pKSE401-BnHBBD-CRISPR into Agrobacterium GV3101 to obtain the Agrobacterium containing the gene editing expression vector pKSE401-BnHBBD-CRISPR;
    (3)扩大培养,利用得到的农杆菌菌液介导油菜下胚轴转化;(3) expanding the culture, using the obtained Agrobacterium bacterium liquid to mediate the transformation of rape hypocotyl;
    (4)油菜下胚轴培养、诱导愈伤组织、再分化、生根培养、炼苗、移栽,得到转基因油菜;(4) Rapeseed hypocotyl culture, callus induction, redifferentiation, rooting culture, seedling hardening, transplanting, to obtain transgenic rapeseed;
    (5)鉴定获得BnHBBD基因发生突变的转基因植株。(5) Identify the transgenic plants with mutations in the BnHBBD gene.
  9. 根据权利要求8所述的方法,其特征在于,所述甘蓝型油菜BnHBBD基因包括BnHBBD-C06和BnHBBD-A07,所述Target1为基因BnHBBD-C06的靶点序列,所述-Target2为基因BnHBBD-A07的靶点序列,The method according to claim 8, wherein the Brassica napus BnHBBD gene comprises BnHBBD-C06 and BnHBBD-A07, the Target1 is the target sequence of the gene BnHBBD-C06, and the -Target2 is the gene BnHBBD- A07 target sequence,
    所述Target1的核苷酸序列如SEQ.ID.NO.1所示,The nucleotide sequence of the Target1 is shown in SEQ.ID.NO.1,
    所述Target2的核苷酸序列如SEQ.ID.NO.2所示,The nucleotide sequence of the Target2 is shown in SEQ.ID.NO.2,
    所述sgRNA的核苷酸序列如SEQ.ID.NO.3所示,The nucleotide sequence of the sgRNA is shown in SEQ.ID.NO.3,
    所述BnHBBD-C06的核苷酸序列如SEQ.ID.NO.4所示,氨基酸序列如SEQ.ID.NO.6所示,The nucleotide sequence of the BnHBBD-C06 is shown in SEQ.ID.NO.4, and the amino acid sequence is shown in SEQ.ID.NO.6,
    所述BnHBBD-A07的核苷酸序列如SEQ.ID.NO.5所示,氨基酸序列如SEQ.ID.NO.7所示。The nucleotide sequence of the BnHBBD-A07 is shown in SEQ.ID.NO.5, and the amino acid sequence is shown in SEQ.ID.NO.7.
  10. 根据权利要求8所述的方法,其特征在于,BnHBBD基因发生的突变包括T碱基的插入。The method according to claim 8, characterized in that the mutation in the BnHBBD gene includes the insertion of a T base.
  11. 权利要求8~10中任一项所述方法获得的突变后的BnHBBD基因在调控甘蓝型油菜花器官脱落中的应用。The application of the mutated BnHBBD gene obtained by the method according to any one of claims 8 to 10 in regulating the abscission of Brassica napus flower organs.
  12. 根据权利要求11所述的应用,其特征在于,所述应用包括抑制甘蓝型油菜中的HBBD蛋白正常合成、长开花期的甘蓝型油菜育种、抗菌核病甘蓝型油菜育种、角果不易开裂油菜育种。The application according to claim 11, characterized in that, the application includes inhibiting the normal synthesis of HBBD protein in Brassica napus, the breeding of Brassica napus with long flowering period, the breeding of Brassica napus with anti-sclerotinia, and the hard-to-crack rape of silique breeding.
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