WO2022269007A1 - A molecule capable of inhibiting the integration of calcineurin with a substrate and uses thereof - Google Patents
A molecule capable of inhibiting the integration of calcineurin with a substrate and uses thereof Download PDFInfo
- Publication number
- WO2022269007A1 WO2022269007A1 PCT/EP2022/067275 EP2022067275W WO2022269007A1 WO 2022269007 A1 WO2022269007 A1 WO 2022269007A1 EP 2022067275 W EP2022067275 W EP 2022067275W WO 2022269007 A1 WO2022269007 A1 WO 2022269007A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- cell
- molecule
- stem cells
- cells
- seq
- Prior art date
Links
- 102000004631 Calcineurin Human genes 0.000 title claims abstract description 63
- 108010042955 Calcineurin Proteins 0.000 title claims abstract description 63
- 239000000758 substrate Substances 0.000 title claims abstract description 24
- 230000002401 inhibitory effect Effects 0.000 title claims abstract description 18
- 230000010354 integration Effects 0.000 title description 2
- 210000000130 stem cell Anatomy 0.000 claims abstract description 78
- 210000004504 adult stem cell Anatomy 0.000 claims abstract description 62
- 206010028980 Neoplasm Diseases 0.000 claims abstract description 56
- 238000000034 method Methods 0.000 claims abstract description 35
- 230000003993 interaction Effects 0.000 claims abstract description 21
- 238000000338 in vitro Methods 0.000 claims abstract description 19
- 238000004113 cell culture Methods 0.000 claims abstract description 17
- 210000004881 tumor cell Anatomy 0.000 claims abstract description 16
- 230000004069 differentiation Effects 0.000 claims abstract description 15
- 230000009758 senescence Effects 0.000 claims abstract description 15
- 210000004027 cell Anatomy 0.000 claims description 156
- 102000039446 nucleic acids Human genes 0.000 claims description 50
- 108020004707 nucleic acids Proteins 0.000 claims description 50
- 150000007523 nucleic acids Chemical class 0.000 claims description 50
- 239000013598 vector Substances 0.000 claims description 44
- 210000001178 neural stem cell Anatomy 0.000 claims description 25
- 108090000765 processed proteins & peptides Proteins 0.000 claims description 19
- 239000001963 growth medium Substances 0.000 claims description 14
- 241000713666 Lentivirus Species 0.000 claims description 13
- 210000001519 tissue Anatomy 0.000 claims description 12
- 230000001617 migratory effect Effects 0.000 claims description 11
- 102100035290 Fibroblast growth factor 13 Human genes 0.000 claims description 10
- 108090000379 Fibroblast growth factor 2 Proteins 0.000 claims description 10
- 210000004966 intestinal stem cell Anatomy 0.000 claims description 10
- 150000001413 amino acids Chemical group 0.000 claims description 9
- 230000035755 proliferation Effects 0.000 claims description 9
- 239000013603 viral vector Substances 0.000 claims description 9
- 230000015572 biosynthetic process Effects 0.000 claims description 8
- 239000003102 growth factor Substances 0.000 claims description 7
- 230000005764 inhibitory process Effects 0.000 claims description 7
- 239000002105 nanoparticle Substances 0.000 claims description 6
- 230000017423 tissue regeneration Effects 0.000 claims description 6
- 238000010494 dissociation reaction Methods 0.000 claims description 5
- 230000005593 dissociations Effects 0.000 claims description 5
- 210000003527 eukaryotic cell Anatomy 0.000 claims description 5
- 108020004999 messenger RNA Proteins 0.000 claims description 5
- 102100036976 X-ray repair cross-complementing protein 6 Human genes 0.000 claims description 4
- 101710124907 X-ray repair cross-complementing protein 6 Proteins 0.000 claims description 4
- 210000000956 olfactory bulb Anatomy 0.000 claims description 4
- 230000001177 retroviral effect Effects 0.000 claims description 4
- 241000702421 Dependoparvovirus Species 0.000 claims description 3
- 238000012544 monitoring process Methods 0.000 claims description 3
- FWMNVWWHGCHHJJ-SKKKGAJSSA-N 4-amino-1-[(2r)-6-amino-2-[[(2r)-2-[[(2r)-2-[[(2r)-2-amino-3-phenylpropanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]hexanoyl]piperidine-4-carboxylic acid Chemical compound C([C@H](C(=O)N[C@H](CC(C)C)C(=O)N[C@H](CCCCN)C(=O)N1CCC(N)(CC1)C(O)=O)NC(=O)[C@H](N)CC=1C=CC=CC=1)C1=CC=CC=C1 FWMNVWWHGCHHJJ-SKKKGAJSSA-N 0.000 claims description 2
- 108010062307 AAVALLPAVLLALLAP Proteins 0.000 claims description 2
- 101800002011 Amphipathic peptide Proteins 0.000 claims description 2
- 101100248440 Danio rerio ric8b gene Proteins 0.000 claims description 2
- 102100028072 Fibroblast growth factor 4 Human genes 0.000 claims description 2
- 101001060274 Homo sapiens Fibroblast growth factor 4 Proteins 0.000 claims description 2
- 108700003968 Human immunodeficiency virus 1 tat peptide (49-57) Proteins 0.000 claims description 2
- 102000017954 Nuclear factor of activated T cells (NFAT) Human genes 0.000 claims description 2
- 108050007058 Nuclear factor of activated T cells (NFAT) Proteins 0.000 claims description 2
- 108010088535 Pep-1 peptide Proteins 0.000 claims description 2
- 102000029797 Prion Human genes 0.000 claims description 2
- 108091000054 Prion Proteins 0.000 claims description 2
- 101710149951 Protein Tat Proteins 0.000 claims description 2
- 108010025307 buforin II Proteins 0.000 claims description 2
- 210000000170 cell membrane Anatomy 0.000 claims description 2
- UKVZSPHYQJNTOU-IVBHRGSNSA-N chembl1240717 Chemical compound C([C@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](NC(=O)CNC(=O)[C@H](C)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CO)NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@@H](N)[C@H](C)O)CC(C)C)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](C(C)C)C(=O)NCC(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC=1NC=NC=1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCCCN)C(O)=O)C1=CC=CC=C1 UKVZSPHYQJNTOU-IVBHRGSNSA-N 0.000 claims description 2
- BHONFOAYRQZPKZ-LCLOTLQISA-N chembl269478 Chemical compound C([C@H](NC(=O)[C@H](CC=1C2=CC=CC=C2NC=1)NC(=O)[C@H]([C@@H](C)CC)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](N)CCCNC(N)=N)[C@@H](C)CC)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC=1C2=CC=CC=C2NC=1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(O)=O)C1=CC=CC=C1 BHONFOAYRQZPKZ-LCLOTLQISA-N 0.000 claims description 2
- 210000004748 cultured cell Anatomy 0.000 claims description 2
- 238000012258 culturing Methods 0.000 claims description 2
- 239000003446 ligand Substances 0.000 claims description 2
- 108010011110 polyarginine Proteins 0.000 claims description 2
- PBKWZFANFUTEPS-CWUSWOHSSA-N transportan Chemical compound C([C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](CC(C)C)C(N)=O)[C@@H](C)CC)NC(=O)CNC(=O)[C@H](C)NC(=O)[C@H](CO)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CC=1C2=CC=CC=C2NC=1)NC(=O)CN)[C@@H](C)O)C1=CC=C(O)C=C1 PBKWZFANFUTEPS-CWUSWOHSSA-N 0.000 claims description 2
- 108010062760 transportan Proteins 0.000 claims description 2
- 108090000623 proteins and genes Proteins 0.000 description 40
- 241000699670 Mus sp. Species 0.000 description 23
- 108010040818 VIVIT peptide Proteins 0.000 description 20
- 108091005948 blue fluorescent proteins Proteins 0.000 description 20
- 102000004169 proteins and genes Human genes 0.000 description 18
- 108020004414 DNA Proteins 0.000 description 15
- 238000001727 in vivo Methods 0.000 description 14
- 102000040430 polynucleotide Human genes 0.000 description 14
- 108091033319 polynucleotide Proteins 0.000 description 14
- 239000002157 polynucleotide Substances 0.000 description 14
- 238000004458 analytical method Methods 0.000 description 13
- 210000004556 brain Anatomy 0.000 description 13
- NKANXQFJJICGDU-QPLCGJKRSA-N Tamoxifen Chemical compound C=1C=CC=CC=1C(/CC)=C(C=1C=CC(OCCN(C)C)=CC=1)/C1=CC=CC=C1 NKANXQFJJICGDU-QPLCGJKRSA-N 0.000 description 12
- 230000000694 effects Effects 0.000 description 12
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 11
- 125000003729 nucleotide group Chemical group 0.000 description 11
- 239000002773 nucleotide Substances 0.000 description 10
- 101001063456 Homo sapiens Leucine-rich repeat-containing G-protein coupled receptor 5 Proteins 0.000 description 9
- 102100031036 Leucine-rich repeat-containing G-protein coupled receptor 5 Human genes 0.000 description 9
- 102000004196 processed proteins & peptides Human genes 0.000 description 9
- 108091023040 Transcription factor Proteins 0.000 description 8
- 102000040945 Transcription factor Human genes 0.000 description 8
- 108091028043 Nucleic acid sequence Proteins 0.000 description 7
- 238000001994 activation Methods 0.000 description 7
- 208000015181 infectious disease Diseases 0.000 description 7
- 241001529936 Murinae Species 0.000 description 6
- 230000004913 activation Effects 0.000 description 6
- 210000001671 embryonic stem cell Anatomy 0.000 description 6
- 239000012634 fragment Substances 0.000 description 6
- 230000006870 function Effects 0.000 description 6
- 230000002068 genetic effect Effects 0.000 description 6
- 238000002347 injection Methods 0.000 description 6
- 239000007924 injection Substances 0.000 description 6
- 229920001184 polypeptide Polymers 0.000 description 6
- 230000001105 regulatory effect Effects 0.000 description 6
- 229960001603 tamoxifen Drugs 0.000 description 6
- OYPRJOBELJOOCE-UHFFFAOYSA-N Calcium Chemical compound [Ca] OYPRJOBELJOOCE-UHFFFAOYSA-N 0.000 description 5
- 108091026890 Coding region Proteins 0.000 description 5
- 241001465754 Metazoa Species 0.000 description 5
- 241000699666 Mus <mouse, genus> Species 0.000 description 5
- 102000008730 Nestin Human genes 0.000 description 5
- 108010088225 Nestin Proteins 0.000 description 5
- 229910052791 calcium Inorganic materials 0.000 description 5
- 239000011575 calcium Substances 0.000 description 5
- 230000008859 change Effects 0.000 description 5
- 238000012423 maintenance Methods 0.000 description 5
- WZUVPPKBWHMQCE-UHFFFAOYSA-N Haematoxylin Chemical compound C12=CC(O)=C(O)C=C2CC2(O)C1C1=CC=C(O)C(O)=C1OC2 WZUVPPKBWHMQCE-UHFFFAOYSA-N 0.000 description 4
- 102000004160 Phosphoric Monoester Hydrolases Human genes 0.000 description 4
- 108090000608 Phosphoric Monoester Hydrolases Proteins 0.000 description 4
- 230000000903 blocking effect Effects 0.000 description 4
- 201000011510 cancer Diseases 0.000 description 4
- 239000012636 effector Substances 0.000 description 4
- 238000010353 genetic engineering Methods 0.000 description 4
- 230000012010 growth Effects 0.000 description 4
- 230000001965 increasing effect Effects 0.000 description 4
- 230000000968 intestinal effect Effects 0.000 description 4
- 238000004519 manufacturing process Methods 0.000 description 4
- 239000003550 marker Substances 0.000 description 4
- 201000001441 melanoma Diseases 0.000 description 4
- 238000001890 transfection Methods 0.000 description 4
- CSCPPACGZOOCGX-UHFFFAOYSA-N Acetone Chemical compound CC(C)=O CSCPPACGZOOCGX-UHFFFAOYSA-N 0.000 description 3
- 108010032088 Calpain Proteins 0.000 description 3
- 102000007590 Calpain Human genes 0.000 description 3
- 108700026244 Open Reading Frames Proteins 0.000 description 3
- 102100024616 Platelet endothelial cell adhesion molecule Human genes 0.000 description 3
- 238000003559 RNA-seq method Methods 0.000 description 3
- 230000010261 cell growth Effects 0.000 description 3
- 230000000295 complement effect Effects 0.000 description 3
- 210000000877 corpus callosum Anatomy 0.000 description 3
- 238000005516 engineering process Methods 0.000 description 3
- 239000013604 expression vector Substances 0.000 description 3
- 210000000936 intestine Anatomy 0.000 description 3
- 230000007246 mechanism Effects 0.000 description 3
- 238000013508 migration Methods 0.000 description 3
- 230000005012 migration Effects 0.000 description 3
- 210000005055 nestin Anatomy 0.000 description 3
- 230000001537 neural effect Effects 0.000 description 3
- 230000037361 pathway Effects 0.000 description 3
- 230000001172 regenerating effect Effects 0.000 description 3
- 238000003786 synthesis reaction Methods 0.000 description 3
- 238000013518 transcription Methods 0.000 description 3
- 230000035897 transcription Effects 0.000 description 3
- 230000002103 transcriptional effect Effects 0.000 description 3
- 230000004614 tumor growth Effects 0.000 description 3
- 230000003612 virological effect Effects 0.000 description 3
- KDCGOANMDULRCW-UHFFFAOYSA-N 7H-purine Chemical compound N1=CNC2=NC=NC2=C1 KDCGOANMDULRCW-UHFFFAOYSA-N 0.000 description 2
- 102100027557 Calcipressin-1 Human genes 0.000 description 2
- 102000000584 Calmodulin Human genes 0.000 description 2
- 108010041952 Calmodulin Proteins 0.000 description 2
- 108020004705 Codon Proteins 0.000 description 2
- 206010009944 Colon cancer Diseases 0.000 description 2
- 208000001333 Colorectal Neoplasms Diseases 0.000 description 2
- 241000701022 Cytomegalovirus Species 0.000 description 2
- 229920002307 Dextran Polymers 0.000 description 2
- 101000580357 Homo sapiens Calcipressin-1 Proteins 0.000 description 2
- 108091092195 Intron Proteins 0.000 description 2
- 241000714177 Murine leukemia virus Species 0.000 description 2
- 241000699660 Mus musculus Species 0.000 description 2
- 108091005461 Nucleic proteins Proteins 0.000 description 2
- 108091034117 Oligonucleotide Proteins 0.000 description 2
- 239000004365 Protease Substances 0.000 description 2
- 101100247004 Rattus norvegicus Qsox1 gene Proteins 0.000 description 2
- 208000003721 Triple Negative Breast Neoplasms Diseases 0.000 description 2
- ISAKRJDGNUQOIC-UHFFFAOYSA-N Uracil Chemical compound O=C1C=CNC(=O)N1 ISAKRJDGNUQOIC-UHFFFAOYSA-N 0.000 description 2
- 241000700605 Viruses Species 0.000 description 2
- 238000009395 breeding Methods 0.000 description 2
- 230000001488 breeding effect Effects 0.000 description 2
- 239000000872 buffer Substances 0.000 description 2
- 230000022131 cell cycle Effects 0.000 description 2
- 238000005119 centrifugation Methods 0.000 description 2
- 230000001143 conditioned effect Effects 0.000 description 2
- 230000001276 controlling effect Effects 0.000 description 2
- 238000011161 development Methods 0.000 description 2
- 230000018109 developmental process Effects 0.000 description 2
- 210000002257 embryonic structure Anatomy 0.000 description 2
- 238000002474 experimental method Methods 0.000 description 2
- 238000003384 imaging method Methods 0.000 description 2
- 238000003364 immunohistochemistry Methods 0.000 description 2
- 230000001939 inductive effect Effects 0.000 description 2
- 238000011081 inoculation Methods 0.000 description 2
- 239000000463 material Substances 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 230000001404 mediated effect Effects 0.000 description 2
- 239000002609 medium Substances 0.000 description 2
- 239000000203 mixture Substances 0.000 description 2
- 238000009126 molecular therapy Methods 0.000 description 2
- 229920000642 polymer Polymers 0.000 description 2
- 238000000746 purification Methods 0.000 description 2
- 238000003753 real-time PCR Methods 0.000 description 2
- 238000012216 screening Methods 0.000 description 2
- 230000011664 signaling Effects 0.000 description 2
- 239000000243 solution Substances 0.000 description 2
- UCSJYZPVAKXKNQ-HZYVHMACSA-N streptomycin Chemical compound CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@@H]1[C@](C=O)(O)[C@H](C)O[C@H]1O[C@@H]1[C@@H](NC(N)=N)[C@H](O)[C@@H](NC(N)=N)[C@H](O)[C@H]1O UCSJYZPVAKXKNQ-HZYVHMACSA-N 0.000 description 2
- 239000000725 suspension Substances 0.000 description 2
- RWQNBRDOKXIBIV-UHFFFAOYSA-N thymine Chemical compound CC1=CNC(=O)NC1=O RWQNBRDOKXIBIV-UHFFFAOYSA-N 0.000 description 2
- 230000000451 tissue damage Effects 0.000 description 2
- 238000012546 transfer Methods 0.000 description 2
- 230000009466 transformation Effects 0.000 description 2
- 238000011830 transgenic mouse model Methods 0.000 description 2
- 230000001052 transient effect Effects 0.000 description 2
- 238000013519 translation Methods 0.000 description 2
- UKVZSPHYQJNTOU-GQJPYGCMSA-N (2S)-6-amino-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[2-[[(2S)-2-[[(2S)-1-[(2S)-2-[[(2S)-5-amino-2-[[(2S)-2-[[2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3R)-2-amino-3-hydroxybutanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-hydroxypropanoyl]amino]-3-hydroxypropanoyl]amino]-5-carbamimidamidopentanoyl]amino]propanoyl]amino]acetyl]amino]-4-methylpentanoyl]amino]-5-oxopentanoyl]amino]-3-phenylpropanoyl]pyrrolidine-2-carbonyl]amino]-3-methylbutanoyl]amino]acetyl]amino]-5-carbamimidamidopentanoyl]amino]-3-methylbutanoyl]amino]-3-(1H-imidazol-5-yl)propanoyl]amino]-5-carbamimidamidopentanoyl]amino]-4-methylpentanoyl]amino]-4-methylpentanoyl]amino]-5-carbamimidamidopentanoyl]amino]hexanoic acid Chemical compound C([C@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](NC(=O)CNC(=O)[C@H](C)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](CO)NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@@H](N)[C@@H](C)O)CC(C)C)C(=O)N1[C@@H](CCC1)C(=O)N[C@@H](C(C)C)C(=O)NCC(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC=1NC=NC=1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCCCN)C(O)=O)C1=CC=CC=C1 UKVZSPHYQJNTOU-GQJPYGCMSA-N 0.000 description 1
- ASJSAQIRZKANQN-CRCLSJGQSA-N 2-deoxy-D-ribose Chemical group OC[C@@H](O)[C@@H](O)CC=O ASJSAQIRZKANQN-CRCLSJGQSA-N 0.000 description 1
- 102100040078 A-kinase anchor protein 5 Human genes 0.000 description 1
- 108010051219 Cre recombinase Proteins 0.000 description 1
- HMFHBZSHGGEWLO-SOOFDHNKSA-N D-ribofuranose Chemical compound OC[C@H]1OC(O)[C@H](O)[C@@H]1O HMFHBZSHGGEWLO-SOOFDHNKSA-N 0.000 description 1
- 102000053602 DNA Human genes 0.000 description 1
- 230000005971 DNA damage repair Effects 0.000 description 1
- 206010013457 Dissociation Diseases 0.000 description 1
- 102100023332 Dual specificity mitogen-activated protein kinase kinase 7 Human genes 0.000 description 1
- 102000000108 Dynamin-1 Human genes 0.000 description 1
- 241000282326 Felis catus Species 0.000 description 1
- WQZGKKKJIJFFOK-GASJEMHNSA-N Glucose Natural products OC[C@H]1OC(O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-GASJEMHNSA-N 0.000 description 1
- 108010061875 HN-1 peptide Proteins 0.000 description 1
- 101000890614 Homo sapiens A-kinase anchor protein 5 Proteins 0.000 description 1
- 101000624594 Homo sapiens Dual specificity mitogen-activated protein kinase kinase 7 Proteins 0.000 description 1
- 101150017554 LGR5 gene Proteins 0.000 description 1
- FYYHWMGAXLPEAU-UHFFFAOYSA-N Magnesium Chemical compound [Mg] FYYHWMGAXLPEAU-UHFFFAOYSA-N 0.000 description 1
- 241000124008 Mammalia Species 0.000 description 1
- 206010027476 Metastases Diseases 0.000 description 1
- 108010057466 NF-kappa B Proteins 0.000 description 1
- 102000003945 NF-kappa B Human genes 0.000 description 1
- 108010018525 NFATC Transcription Factors Proteins 0.000 description 1
- 102000002673 NFATC Transcription Factors Human genes 0.000 description 1
- 108010038807 Oligopeptides Proteins 0.000 description 1
- 102000015636 Oligopeptides Human genes 0.000 description 1
- 206010033128 Ovarian cancer Diseases 0.000 description 1
- 206010061535 Ovarian neoplasm Diseases 0.000 description 1
- 102000038030 PI3Ks Human genes 0.000 description 1
- 108091007960 PI3Ks Proteins 0.000 description 1
- 206010061902 Pancreatic neoplasm Diseases 0.000 description 1
- 108090000526 Papain Proteins 0.000 description 1
- 229930182555 Penicillin Natural products 0.000 description 1
- JGSARLDLIJGVTE-MBNYWOFBSA-N Penicillin G Chemical compound N([C@H]1[C@H]2SC([C@@H](N2C1=O)C(O)=O)(C)C)C(=O)CC1=CC=CC=C1 JGSARLDLIJGVTE-MBNYWOFBSA-N 0.000 description 1
- 108091005804 Peptidases Proteins 0.000 description 1
- 108010067902 Peptide Library Proteins 0.000 description 1
- 108091000080 Phosphotransferase Proteins 0.000 description 1
- 208000000236 Prostatic Neoplasms Diseases 0.000 description 1
- CZPWVGJYEJSRLH-UHFFFAOYSA-N Pyrimidine Chemical compound C1=CN=CN=C1 CZPWVGJYEJSRLH-UHFFFAOYSA-N 0.000 description 1
- 102100037486 Reverse transcriptase/ribonuclease H Human genes 0.000 description 1
- 108091028664 Ribonucleotide Proteins 0.000 description 1
- PYMYPHUHKUWMLA-LMVFSUKVSA-N Ribose Natural products OC[C@@H](O)[C@@H](O)[C@@H](O)C=O PYMYPHUHKUWMLA-LMVFSUKVSA-N 0.000 description 1
- MTCFGRXMJLQNBG-UHFFFAOYSA-N Serine Natural products OCC(N)C(O)=O MTCFGRXMJLQNBG-UHFFFAOYSA-N 0.000 description 1
- 108020004682 Single-Stranded DNA Proteins 0.000 description 1
- 108020004459 Small interfering RNA Proteins 0.000 description 1
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 1
- AYFVYJQAPQTCCC-UHFFFAOYSA-N Threonine Natural products CC(O)C(N)C(O)=O AYFVYJQAPQTCCC-UHFFFAOYSA-N 0.000 description 1
- 239000004473 Threonine Substances 0.000 description 1
- 102000006601 Thymidine Kinase Human genes 0.000 description 1
- 108020004440 Thymidine kinase Proteins 0.000 description 1
- 230000010632 Transcription Factor Activity Effects 0.000 description 1
- 229920004890 Triton X-100 Polymers 0.000 description 1
- 239000013504 Triton X-100 Substances 0.000 description 1
- 208000007097 Urinary Bladder Neoplasms Diseases 0.000 description 1
- 208000036142 Viral infection Diseases 0.000 description 1
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Polymers Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 description 1
- 150000001447 alkali salts Chemical class 0.000 description 1
- HMFHBZSHGGEWLO-UHFFFAOYSA-N alpha-D-Furanose-Ribose Natural products OCC1OC(O)C(O)C1O HMFHBZSHGGEWLO-UHFFFAOYSA-N 0.000 description 1
- 230000003321 amplification Effects 0.000 description 1
- 238000004873 anchoring Methods 0.000 description 1
- -1 antibodies Chemical class 0.000 description 1
- 230000001908 autoinhibitory effect Effects 0.000 description 1
- 230000001580 bacterial effect Effects 0.000 description 1
- 230000031018 biological processes and functions Effects 0.000 description 1
- 210000004369 blood Anatomy 0.000 description 1
- 239000008280 blood Substances 0.000 description 1
- 210000004958 brain cell Anatomy 0.000 description 1
- 210000000481 breast Anatomy 0.000 description 1
- 239000007853 buffer solution Substances 0.000 description 1
- 239000001506 calcium phosphate Substances 0.000 description 1
- 229910000389 calcium phosphate Inorganic materials 0.000 description 1
- 235000011010 calcium phosphates Nutrition 0.000 description 1
- 231100000504 carcinogenesis Toxicity 0.000 description 1
- 239000003054 catalyst Substances 0.000 description 1
- 230000003197 catalytic effect Effects 0.000 description 1
- 239000006143 cell culture medium Substances 0.000 description 1
- 230000024245 cell differentiation Effects 0.000 description 1
- 230000007910 cell fusion Effects 0.000 description 1
- 239000006285 cell suspension Substances 0.000 description 1
- 230000001413 cellular effect Effects 0.000 description 1
- 238000012512 characterization method Methods 0.000 description 1
- 239000003153 chemical reaction reagent Substances 0.000 description 1
- 239000003795 chemical substances by application Substances 0.000 description 1
- 210000000349 chromosome Anatomy 0.000 description 1
- 230000001684 chronic effect Effects 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 238000010367 cloning Methods 0.000 description 1
- 210000001072 colon Anatomy 0.000 description 1
- 238000010835 comparative analysis Methods 0.000 description 1
- 239000003636 conditioned culture medium Substances 0.000 description 1
- 238000004624 confocal microscopy Methods 0.000 description 1
- 238000011443 conventional therapy Methods 0.000 description 1
- 238000012937 correction Methods 0.000 description 1
- 230000002596 correlated effect Effects 0.000 description 1
- 230000018044 dehydration Effects 0.000 description 1
- 238000006297 dehydration reaction Methods 0.000 description 1
- 230000030609 dephosphorylation Effects 0.000 description 1
- 238000006209 dephosphorylation reaction Methods 0.000 description 1
- 235000014113 dietary fatty acids Nutrition 0.000 description 1
- 238000010790 dilution Methods 0.000 description 1
- 239000012895 dilution Substances 0.000 description 1
- 208000018459 dissociative disease Diseases 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 238000004520 electroporation Methods 0.000 description 1
- 210000002308 embryonic cell Anatomy 0.000 description 1
- 210000002889 endothelial cell Anatomy 0.000 description 1
- 239000003623 enhancer Substances 0.000 description 1
- 238000001952 enzyme assay Methods 0.000 description 1
- YQGOJNYOYNNSMM-UHFFFAOYSA-N eosin Chemical compound [Na+].OC(=O)C1=CC=CC=C1C1=C2C=C(Br)C(=O)C(Br)=C2OC2=C(Br)C(O)=C(Br)C=C21 YQGOJNYOYNNSMM-UHFFFAOYSA-N 0.000 description 1
- 230000007705 epithelial mesenchymal transition Effects 0.000 description 1
- 230000005284 excitation Effects 0.000 description 1
- 229930195729 fatty acid Natural products 0.000 description 1
- 239000000194 fatty acid Substances 0.000 description 1
- 150000004665 fatty acids Chemical class 0.000 description 1
- 238000000684 flow cytometry Methods 0.000 description 1
- 239000007850 fluorescent dye Substances 0.000 description 1
- 239000012595 freezing medium Substances 0.000 description 1
- 238000012239 gene modification Methods 0.000 description 1
- 230000005017 genetic modification Effects 0.000 description 1
- 235000013617 genetically modified food Nutrition 0.000 description 1
- 208000005017 glioblastoma Diseases 0.000 description 1
- 239000008103 glucose Substances 0.000 description 1
- ZDXPYRJPNDTMRX-UHFFFAOYSA-N glutamine Natural products OC(=O)C(N)CCC(N)=O ZDXPYRJPNDTMRX-UHFFFAOYSA-N 0.000 description 1
- 210000001320 hippocampus Anatomy 0.000 description 1
- 210000005260 human cell Anatomy 0.000 description 1
- 238000010191 image analysis Methods 0.000 description 1
- 210000000987 immune system Anatomy 0.000 description 1
- 238000011532 immunohistochemical staining Methods 0.000 description 1
- 239000007943 implant Substances 0.000 description 1
- 238000010348 incorporation Methods 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- 230000003834 intracellular effect Effects 0.000 description 1
- 238000007917 intracranial administration Methods 0.000 description 1
- 238000002955 isolation Methods 0.000 description 1
- 208000032839 leukemia Diseases 0.000 description 1
- 238000001638 lipofection Methods 0.000 description 1
- 238000011528 liquid biopsy Methods 0.000 description 1
- 208000014018 liver neoplasm Diseases 0.000 description 1
- 230000004807 localization Effects 0.000 description 1
- 229910052749 magnesium Inorganic materials 0.000 description 1
- 239000011777 magnesium Substances 0.000 description 1
- 108010082117 matrigel Proteins 0.000 description 1
- 230000009401 metastasis Effects 0.000 description 1
- 108091070501 miRNA Proteins 0.000 description 1
- 239000002679 microRNA Substances 0.000 description 1
- 238000000520 microinjection Methods 0.000 description 1
- 238000010232 migration assay Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 108091005601 modified peptides Proteins 0.000 description 1
- 238000007479 molecular analysis Methods 0.000 description 1
- 238000003032 molecular docking Methods 0.000 description 1
- 230000003990 molecular pathway Effects 0.000 description 1
- 238000010172 mouse model Methods 0.000 description 1
- 230000035772 mutation Effects 0.000 description 1
- 210000003061 neural cell Anatomy 0.000 description 1
- 238000003199 nucleic acid amplification method Methods 0.000 description 1
- 230000003287 optical effect Effects 0.000 description 1
- 238000003305 oral gavage Methods 0.000 description 1
- 210000000056 organ Anatomy 0.000 description 1
- 210000001672 ovary Anatomy 0.000 description 1
- 210000000496 pancreas Anatomy 0.000 description 1
- 229940055729 papain Drugs 0.000 description 1
- 235000019834 papain Nutrition 0.000 description 1
- 239000002245 particle Substances 0.000 description 1
- 230000035515 penetration Effects 0.000 description 1
- 229940049954 penicillin Drugs 0.000 description 1
- 102000020233 phosphotransferase Human genes 0.000 description 1
- 230000008832 photodamage Effects 0.000 description 1
- 230000004962 physiological condition Effects 0.000 description 1
- 239000013612 plasmid Substances 0.000 description 1
- 230000008488 polyadenylation Effects 0.000 description 1
- 239000002243 precursor Substances 0.000 description 1
- 230000008569 process Effects 0.000 description 1
- 210000001236 prokaryotic cell Anatomy 0.000 description 1
- 210000004129 prosencephalon Anatomy 0.000 description 1
- 210000002307 prostate Anatomy 0.000 description 1
- 201000001514 prostate carcinoma Diseases 0.000 description 1
- 235000019419 proteases Nutrition 0.000 description 1
- 230000017854 proteolysis Effects 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 238000010839 reverse transcription Methods 0.000 description 1
- 239000002336 ribonucleotide Substances 0.000 description 1
- 125000002652 ribonucleotide group Chemical group 0.000 description 1
- 239000012266 salt solution Substances 0.000 description 1
- 229920006395 saturated elastomer Polymers 0.000 description 1
- 239000004017 serum-free culture medium Substances 0.000 description 1
- 230000035939 shock Effects 0.000 description 1
- 210000003491 skin Anatomy 0.000 description 1
- 210000001988 somatic stem cell Anatomy 0.000 description 1
- 238000001228 spectrum Methods 0.000 description 1
- 238000010186 staining Methods 0.000 description 1
- 230000023895 stem cell maintenance Effects 0.000 description 1
- 238000003756 stirring Methods 0.000 description 1
- 229960005322 streptomycin Drugs 0.000 description 1
- 238000010254 subcutaneous injection Methods 0.000 description 1
- 239000007929 subcutaneous injection Substances 0.000 description 1
- 235000000346 sugar Nutrition 0.000 description 1
- 150000008163 sugars Chemical class 0.000 description 1
- 238000001356 surgical procedure Methods 0.000 description 1
- 229920001059 synthetic polymer Polymers 0.000 description 1
- 238000002626 targeted therapy Methods 0.000 description 1
- 238000012360 testing method Methods 0.000 description 1
- 230000001225 therapeutic effect Effects 0.000 description 1
- 229940113082 thymine Drugs 0.000 description 1
- 231100000827 tissue damage Toxicity 0.000 description 1
- 230000030968 tissue homeostasis Effects 0.000 description 1
- 230000008427 tissue turnover Effects 0.000 description 1
- 238000010361 transduction Methods 0.000 description 1
- 230000026683 transduction Effects 0.000 description 1
- 230000007704 transition Effects 0.000 description 1
- QORWJWZARLRLPR-UHFFFAOYSA-H tricalcium bis(phosphate) Chemical compound [Ca+2].[Ca+2].[Ca+2].[O-]P([O-])([O-])=O.[O-]P([O-])([O-])=O QORWJWZARLRLPR-UHFFFAOYSA-H 0.000 description 1
- 208000022679 triple-negative breast carcinoma Diseases 0.000 description 1
- 241001430294 unidentified retrovirus Species 0.000 description 1
- 229940035893 uracil Drugs 0.000 description 1
- 210000003932 urinary bladder Anatomy 0.000 description 1
- 230000009385 viral infection Effects 0.000 description 1
- 210000005253 yeast cell Anatomy 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/06—Animal cells or tissues; Human cells or tissues
- C12N5/0602—Vertebrate cells
- C12N5/0607—Non-embryonic pluripotent stem cells, e.g. MASC
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/06—Animal cells or tissues; Human cells or tissues
- C12N5/0602—Vertebrate cells
- C12N5/0693—Tumour cells; Cancer cells
- C12N5/0695—Stem cells; Progenitor cells; Precursor cells
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2510/00—Genetically modified cells
Definitions
- the present invention relates to a method for expanding activated adult stem cells or tumor stem cells and/or for maintaining an activated adult stem cell or tumor stem cell culture in vitro in a stem state and/or preventing its senescence and/or differentiation and/or for enriching a cell culture with activated adult stem cells or tumor cells, the method comprising stably providing a target stem cell or target stem cell culture with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif, where said target stem cell is an adult stem cell or tumor stem cells.
- CN calcineurin
- the invention also refers to cells obtainable by the method and uses thereof and to a molecule able to chronically inhibit the interaction of calcineurin (CN) with a substrate containing the PxIxIT motifs for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
- CN calcineurin
- Calcineurin is a ubiquitously expressed serine (Ser)/threonine (Thr) phosphatase and is composed of a catalytic subunit A (CNA), and a regulatory subunit B (CNB).
- CNA catalytic subunit A
- CNB regulatory subunit B
- CN is activated by calmodulin or calpain following an increase in intracellular calcium levels (1).
- calcium binds to the CNB regulatory sites inducing a conformational change on the CN that allows the interaction of the CN with the calmodulin/calcium complex. This interaction leads to the exposure of the CN catalyst site.
- the increase in calcium induces the protease activity of calpain that cuts the CN autoinhibitory domain, generating a constitutively active form (2).
- CN interacts with substrates that have two main binding sites: the PxIxIT motif, which is considered the primary docking site, and the Lx VP motif (3). Proteins containing either or both of these motifs can be partitioned into regulators and effectors. Regulators are proteins that control CN activity by modulating its subcellular activation and localisation or by recruiting effector molecules. Effectors are transcription factors or kinases. For example, among ubiquitously expressed CN substrates containing the PxIxIT motif, Cabinl, RCAN1/DSCR1, and AKAP79 show regulator functions, while Dynamin 1 GTPase, MKK7 kinase, and NFAT family of transcription factors have effector functions. Clinical and experimental trials have shown the role of CN in controlling cancer progression.
- CN colorectal cancer
- CN phosphatase function induces tumour regression (4).
- CN is activated in triple- negative breast cancers and is responsible for tumour growth and metastasis formation (5).
- a correlation between CN and tumourigenesis has also been observed in other cancers, including melanoma, leukaemia, glioblastoma and cancer of the liver, pancreas, bladder, ovary and prostate (6)(7)(8)(9)(10)(11).
- Pro-X-Ile-X-Ile-Thr (PxIxIT) sequence peptides (SEQ ID NO:21), derived from the conserved CN-binding motif found in NFAT proteins, compete with NFAT for CN- binding, compromising NFAT binding and dephosphorylation as shown in enzyme assays.
- the Val-Ile-Val-Ile-Thr (VIVIT) oligopeptide (SEQ ID NO:l) 16mero possesses a high affinity for CN and effectively inhibits NFAT and its activity, but not NF-kB transcription factor activity as indicated by the activation of the respective genes (12).
- VIVIT peptide is more selective than CsA and FK506, which inhibit the activation of both transcription factors as they block the phosphatase activity of CN.
- This peptide was identified by random screening of a peptide library. Competing for the main CN binding site, it inhibits the interaction between CN and, not only NFAT, but any substrate containing the PxIxIT motif ( Figure 1) (12). It has been shown that the NFAT family of transcription factors is required for differentiation of embryonic stem cells.
- the stem cells do not differentiate under conditions that normally induce differentiation (subtraction of growth factors that allow the maintenance of sternness) (Xiang Li et ak, “Calcineurin-NFAT signalling critically regulates early lineage specification in mouse embryonic stem cells and embryos”, Cell Stem Cell , Vol. 8, 46-58, January 2011).
- Adult stem cells also known as somatic stem cells or tissue stem cells
- tissue stem cells are rare populations of undifferentiated cells found in the body during most of the postnatal life. They are defined as multipotent in that they are able to self-renew but only give rise to mature cells of the tissue in which they reside. Their progeny replaces cells lost due to tissue turnover or damage, thus ensuring the maintenance of tissue homeostasis.
- Adult stem cells are usually kept in a quiescent state but, once activated, proliferate to reconstitute damaged tissues. Their division is asymmetrical in that a stem cell, which maintains the tissue niche, and a precursor, which differentiates into the mature cell, are generated from a stem cell. Multiple organs are known to possess a stem niche.
- Some well-researched examples in mammals include tissues with high regenerative capacity such as blood, skin, intestine, and others to lesser or almost no regenerative capacity, such as the brain.
- tissues with high regenerative capacity such as blood, skin, intestine, and others to lesser or almost no regenerative capacity, such as the brain.
- adult stem cells are all the more abundant in a given tissue the greater the latter’s capacity (and need) to regenerate.
- the adult neural stem cells are numerically small and are located in specific areas of the brain: the hippocampus, the subventricular area and the olfactory bulbs.
- the biggest limitation observed is the difficulty of maintaining adult stem cells in culture and expanding them in an in vitro system to obtain an adequate number for the reinfusion for the shelter of tissue damage.
- cancer stem cells mediate primary and acquired resistance to conventional and target therapies.
- CSCs have similar characteristics to stem cells and have been isolated from many cancers. They are generally characterised by a differentiating potential (recapitulating intratumour heterogeneity), by slow proliferation phenotype, high expression of DNA damage repair mechanisms, anti-apototic proteins, immune system evasion mechanisms (13), and increased activity of the sternness pathways (i.e. Wnt and PI3K/Akt) (14)(15). Isolating CSCs is very difficult because no specific markers are known. There are therefore no standardised protocols, and each laboratory concerned uses non-standardised, secret and expensive protocols. In addition, CSCs may not always be obtained from liquid biopsies or solid tumours.
- tumor cells expressing a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif maintained an undifferentiated condition with a migratory phenotype both in vitro and in vivo.
- an object of the invention is a method for expanding activated adult stem cells or tumor stem cells and/or for maintaining an activated adult stem cell or tumor stem cell culture in vitro in a stem state and/or preventing its senescence and/or differentiation and/or for enriching a cell culture with activated adult stem cells or tumor cells, the method comprising providing, preferably stably providing, a target stem cell or target stem cell culture with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif, where said target stem cell is an adult stem cell or tumor stem cells.
- CN calcineurin
- the provision, preferably stably provision, of said molecule to said target stem cell or target stem cell culture allows to obtain activated adult stem cells or tumor stem cells or cultures thereof.
- the activated adult stem cells or tumor stem cells are cells in active proliferation and/or with migratory capacity.
- said target cells are adult stem cells of various tissues, preferably neural stem cells, intestinal stem cells, tumor stem cells, preferably of human or mouse origin, more preferably said neural stem cells are obtained from the olfactory bulb and they are preferably human.
- said molecule is a competitor for the binding site of the CN with the nuclear factor of activated T-cells (NFAT).
- said molecule is expressed, preferably stably expressed, by the target stem cell or target stem cell culture.
- said molecule is a peptide comprising or consisting of the sequence SEQ ID NO:l VIVIT, SEQ ID NO: 2 CGGGKMAGP VIVIT GPHEE, SEQ ID NO:3 CGGVIVIT, SEQ ID NO:4 CGGGKMAGPHPVIVITGPHEE or SEQ ID NO:5 C GGGM AGP VI VIT GPHEE .
- the molecule further comprises an amino acid sequence which allows passage through the cell membrane of an eukaryotic cell, preferably said sequence selected from the following group poly-arginine, Arg 11 (RRRRRRRRRRR/SEQ ID NO: 6) ;
- MAP model amphipathic peptide
- the provision, preferably stably provision, of the molecule to the target cell comprises:
- cassette is preferably comprised in a replicable vector, preferably a viral vector, preferably an adeno-associated virus (AAV), an unintegrated lentivirus, an adenoviral or retroviral vector, or a non-viral vector and / or
- a replicable vector preferably a viral vector, preferably an adeno-associated virus (AAV), an unintegrated lentivirus, an adenoviral or retroviral vector, or a non-viral vector and / or
- nucleic acid encoding the molecule including mRNA, preferably linked to a nanoparticle, such as a nanovector.
- the method comprises the steps of: i. culturing neural stem cells in vitro in an appropriate culture medium comprising growth factors, e.g. EGF and / or FGF2, for 5-20 days, preferably 15 days, ii. perform at least one dissociation of the cultured cells and obtain neurospheres, iii. provide the neurospheres with a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif as defined in any one claims 3-5, iv. culture the neurospheres in a culture medium comprising growth factors, for example EGF and / or FGF2, until their natural senescence is reached, preferably for 60-90 days, and optionally v. isolate stem cell colonies from the culture resulting from the step iv.
- growth factors e.g. EGF and / or FGF2
- the method comprises the steps of: i. Cultivate in vitro tumor cells, preferably a tumor line, in an appropriate culture medium comprising growth factors, for example EGF and / or FGF2, ii. Perform at least 3 culture passages, iii. provide the cells with a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif as defined in any one of claims 3-5, iv. Perform at least 3 culture passages, v. Bringing culture to a state of complete confluence each time and monitoring the formation of spheres, e.g.7-10 days and optionally vi. isolate stem cell colonies from the culture resulting from the step v.
- Cultivate in vitro tumor cells preferably a tumor line
- an appropriate culture medium comprising growth factors, for example EGF and / or FGF2
- ii. Perform at least 3 culture passages, iii. provide the cells with a molecule capable of inhibiting the interaction of calcineur
- step iii. comprises delivery with a vector expressing the molecule as defined herein and / or comprising a nucleic acid encoding said molecule.
- the vector is a viral vector, preferably a lentivirus.
- said molecule is a peptide comprising or consisting of the sequence SEQ ID NO:l VIVIT
- Another object of the invention is a cell obtainable from the method as defined herein, preferably for medical use, more preferably for use in cell or tissue regeneration.
- a further object of the inventions is a cell population comprising at least one cell as defined herein, preferably for medical use, more preferably for use in cell or tissue regeneration.
- Another object of the invention is the use of the cell or population according as defined herein for in vitro experimentation.
- a further object of the invention is a molecule able to chronically inhibit the interaction of calcineurin (CN) with a substrate containing the PxIxIT motifs as defined herein for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
- CN calcineurin
- the activated adult stem cells are cells in active proliferation and/or with migratory capacity.
- the activated adult stem cells are obtained by providing, preferably stably providing, said molecule to adult stem cells and/or wherein the activated adult stem cells express, preferably stably express, said molecule.
- Another object of the invention is a nucleic acid encoding the molecule as defined herein for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
- a further object of the invention is a vector expressing the molecule as defined herein or comprising the nucleic acid as defined herein or nanoparticle, such as a nanovector, comprising the molecule as defined herein or comprising the nucleic acid as defined herein for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
- Another object of the invention is use of the molecule as defined herein, of the nucleic acid according as defined herein or of the vector as defined herein or the nanoparticle as defined herein to stably inhibit the bond between the CN and one or more of its specific ligands.
- Another object of the invention is a cell comprising and / or expressing the molecule as defined herein or the nucleic acid as defined herein or the vector as defined herein and / or engineered to comprise and / or express said molecule or said nucleic acid or said vector, preferably for medical use, more preferably in cell or tissue regeneration.
- the cell stably express said molecule.
- a cell population comprising at least one cell as defined herein, preferably for medical use, more preferably in cell or tissue regeneration, and the use of the cell or population as defined herein for in vitro experimentation.
- the molecule according to the invention can be selected from, but is not limited to, nucleic acids, peptides, proteins, antibodies, sugars, synthetic polymers, polynucleotides, fatty acids, small organic molecules or combinations thereof.
- the activated adult stem cells or “activated tumor stem cells” (or cultures thereof) means adult stem cells or tumor stem cells in active proliferation and/or with migratory capacity (or cultures thereof), preferably in active proliferation and with migratory capacity. Such cells may also be defined as non-quiescent or non-quiescent-activated.
- Such cells are obtained by respectively providing target adult stem cells or target tumor cells (or cultures thereof) with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif,
- such molecule is provided to the target cells, e.g. by genetically modifying the cell, e g. by transduction, transformation or transfection with the polynucleotide or with the vector as described herein.
- such molecule is stably provided to the target cells, e.g. by genetically modifying the cell, e.g. by transfection with the polynucleotide or with the vector as described herein.
- the target stem cell or target stem cell culture or the activated adult stem cells or activated tumor stem cells transiently or stably express the above molecule.
- the expression of VIVIT indeed induces the expansion of activated (or non-quiescent-activated) adult stem cells, characterized by a greater migratory capacity compared to cells that do not express VIVT peptide.
- active proliferation it intended e.g. a cell state in which stem cells are able to proliferate, proceeding toward the various phases of the cell cycle, rather than being blocked in GO phase.
- active proliferation The opposite of ‘active proliferation’ are ‘quiescence’, a cell state in which stem cells do not proliferate but do not die, they simply remain in the GO phase of the cell cycle until they receive specific signals.
- tumor stem cells or “cancer stem cells” may be used interchangeably.
- the step of providing target adult stem cells or target tumor cells (or cultures thereof) with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif may comprise or consists of:
- cassette is preferably comprised in a replicable vector, preferably a viral vector, preferably an adeno- associated virus (AAV), an unintegrated lentivirus, an adenoviral or retroviral vector, or a non- viral vector and / or
- a replicable vector preferably a viral vector, preferably an adeno- associated virus (AAV), an unintegrated lentivirus, an adenoviral or retroviral vector, or a non- viral vector and / or
- nucleic acid encoding the molecule including mRNA, preferably linked to a nanoparticle, such as a nanovector and/or
- the cells of the invention may also be defined as host cells or genetically modified cell.
- the stem cells of the invention or the cells of the invention are not human embryonic cells.
- expression vector refers to a nucleic acid that transduces, transforms or infects a host cell, causing the cell to produce nucleic acids and/or proteins other than those that are native to the cell, or causing it to express nucleic acids and/or proteins in a manner not native to the cell.
- endogenous refers to a molecule (e g. A nucleic acid or a polypeptide) or process that occurs naturally, e.g. in a nonrecombinant host cell.
- polynucleotide and “nucleic acid” used interchangeably herein refer to a polymeric form of nucleotides of any length, either ribonucleotides or deoxynucleotides. Thus, this term includes, but is not limited to, single-, double-, or multi-stranded DNA or RNA, genomic DNA, cDNA, DNA-RNA hybrids, or a polymer comprising purine and pyrimidine bases, or other natural, chemically or biochemically modified, non-natural, or functionalised nucleotide bases.
- peptide refers to a polymeric form of amino acids of any length, which can include coded and non-coded amino acids, chemically or biochemically modified or derivatised amino acids, and polypeptides having modified peptide backbones.
- the terms “operon” and “single transcription unit” are used interchangeably to refer to two or more contiguous coding regions (nucleotide sequences that encode a gene product such as an RNA or a protein) that are coordinately regulated by one or more controlling elements (e.g. a promoter).
- the term “gene product” refers to an RNA encoded by DNA (or vice versa) or protein that is encoded by an RNA or DNA, where a gene will typically comprise one or more nucleotide sequences that encode a protein, and may also include introns and other non-coding nucleotide sequences.
- heterologous nucleic acid refers to a nucleic acid wherein at least one of the following statements is true: (a) the nucleic acid is foreign (“exogenous”) to (that is, not naturally found in) a given host cell; (b) the nucleic acid comprises a nucleotide sequence that is naturally found in (that is, is “endogenous”) to a given host cell, but the nucleotide sequence is produced in an unnatural (for example, greater than expected or greater than naturally found) amount in the cell; (c) the nucleic acid comprises a nucleotide sequence the sequence of which differs from an endogenous nucleotide sequence, but the nucleotide sequence encodes the same protein (having the same or substantially the same amino acid sequence) and is produced in an unnatural (for example, greater than expected or greater than naturally found) amount in the cell; or (d) the nucleic acid comprises two or more nucleotide sequences that are not in the same relationship with
- recombinant means that a particular nucleic acid (DNA or RNA) is the product of various combinations of cloning, restriction, and/or ligation steps, resulting in the formation of a construct having a structural coding sequence or non-coding sequence distinguishable from endogenous nucleic acids found in natural systems.
- DNA sequences encoding the structural coding sequence can be assembled from cDNA fragments and short oligonucleotide linkers, or from a series of synthetic oligonucleotides, to provide a synthetic nucleic acid which is capable of being expressed from a recombinant transcriptional unit contained in a cell or in a cell-free transcription and translation system.
- sequences can be provided in the form of an open reading frame uninterrupted by internal non- translated sequences, or introns, which are typically present in eukaryotic genes.
- Genomic DNA comprising the sequences of interest can also be used in the formation of a recombinant gene or a transcriptional unit. Sequences of non-translated DNA may be present at 5’ or 3’ of the open reading frame, where such sequences do not interfere with manipulation or expression of the coding regions, and may indeed act to modulate production of a desired product by various mechanisms (see “DNA regulatory sequences”, below).
- the term “recombinant” polynucleotide or nucleic acid refers to one which is not naturally occurring, e.g. which is made by the artificial combination of two otherwise separated segments of sequence with human intervention.
- This artificial combination is often accomplished either by chemical synthesis means or by the artificial manipulation of isolated segments of nucleic acids, e.g. by genetic engineering techniques. Generally, this is done in order to replace a codon with a redundant codon coding for the same or a conservative amino acid, typically by introducing or removing the sequence recognition site at the same time. Alternatively, it is performed to join together nucleic acid segments with desired functions to generate a desired combination of functions.
- This artificial combination is often accomplished either by chemical synthesis means or by the artificial manipulation of isolated segments of nucleic acids, e.g. by genetic engineering techniques.
- transformation or “genetic modification” refers to a genetic change, permanent or transient, induced in a cell following introduction of a new nucleic acid.
- a “genetically modified cell” is a host cell into which a new (e.g. exogenous; heterologous) nucleic acid has been introduced.
- a genetic change (“modification”) can be accomplished either by incorporation of the new DNA into the genome of the host cell, or by transient or stable maintenance of the new DNA as an episomal element.
- a permanent genetic change is generally achieved by introducing DNA into the cell’s genome.
- a permanent genetic change can be introduced into the chromosome or via extrachromosomal elements, such as plasmids and expression vectors, which may contain one or more selectable markers to aid in their maintenance in the recombinant host cell.
- DNA regulatory sequences refer to transcriptional and translational control sequences, such as promoters, enhancers, polyadenylation signals, terminators, protein degradation signals, and the like, that provide for and/or regulate expression of a coding sequence and/or production of an encoded polypeptide in a host cell.
- operably linked refers to a juxtaposition wherein the components so described are in a relationship that enables them to function in the intended manner.
- a promoter is operatively linked to a nucleotide sequence if the promoter affects the transcription or expression of the nucleotide sequence.
- a “host cell,” as used herein, denotes an in vitro eukaryotic cell (e.g. a yeast cell), which eukaryotic cell can be, or has been, used as a recipient for a nucleic acid, and comprises the progeny of the original cell which has been genetically modified with the nucleic acid. It is understood that the progeny of a single cell may not necessarily be completely identical in morphology or in genomic or total DNA complement as the original parent, due to natural, accidental or deliberate mutation.
- a “recombinant host cell” (also referred to as a “genetically modified host cell”) is a host cell into which has been introduced a heterologous nucleic acid, e.g. an expression vector.
- a suitable eukaryotic host cell is a genetically modified eukaryotic host cell by virtue of introduction into a suitable eukaryotic host cell a heterologous nucleic acid, e g. an exogenous nucleic acid that is foreign to the eukaryotic host cell, or a recombinant nucleic acid that is not normally found in the eukaryotic host cell.
- a heterologous nucleic acid e g. an exogenous nucleic acid that is foreign to the eukaryotic host cell, or a recombinant nucleic acid that is not normally found in the eukaryotic host cell.
- the term “isolated” is meant to describe a polynucleotide, a polypeptide, or a cell that is in an environment different from that in which the polynucleotide, the polypeptide, or the cell naturally occurs.
- polynucleotides includes DNA, RNA, siRNA and miRNA, whether viral, bacterial, plant or animal (e.g. mammalian), synthetic, single- or double-stranded, comprising natural, non-natural or chemically modified nucleotides.
- the molecule can also include labelled molecules, such as radioactively or fluorophore labelled molecules.
- RNA molecules identical to said polynucleotides are also comprised in the invention, except that the RNA sequence contains uracil instead of thymine and the skeleton of the RNA molecule contains ribose instead of deoxyribose, RNA sequences complementary to the sequences described therein, functional fragments, mutants and derivatives thereof, proteins encoded by them, functional fragments, mutants and derivatives thereof.
- nucleic acid or amino acid sequences derived from the nucleotide or amino acid sequences shown in the present invention e.g.
- the CSCs were obtained from murine melanoma, e.g. from B16 cells and/or from murine triple negative breast cancer e.g. 4T1 cells.
- the cells are preferably murine neural stem cells obtained from the subventricular area of the brain and/or intestinal stem cells extracted from the mouse intestine
- the term “complete confluence” denotes the state in which the cells are at such a density that there is no space between them and can be assessed by means of a microscope.
- the term denotes, for example, a confluence of more than 80 per cent.
- the cells described herein are characterised by the fact that exogenous nucleic acid has been introduced by the use of a viral vector, for example in the form of a viral expression construct, more preferably a lentiviral or retroviral vector.
- the cells described herein are characterised by the fact that exogenous nucleic acid is or comprises a construct of non-viral expression.
- the polynucleotide (or exogenous nucleic acid) is under the control of a promoter capable of expressing said polynucleotide efficiently.
- the polynucleotide sequence in the vector is operatively linked to an appropriate expression control sequence (promoter) to direct the synthesis of the mRNA.
- promoters include the immediate promoter of early cytomegalovirus (CMV) genes, thymidine kinase HSV, early and late SV40, LTRs from retrovirus, preferably derived from murine leukemia viruses (MLV).
- CMV cytomegalovirus
- HSV thymidine kinase HSV
- early and late SV40 LTRs from retrovirus, preferably derived from murine leukemia viruses (MLV).
- MMV murine leukemia viruses
- the vectors may also contain one or more selectable gene markers.
- the term “genetically modified cell” refers to a host cell that has been transduced, transformed or transfected with the polynucleotide or with the vector as described above.
- the introduction of the polynucleotide or vector previously described in the host cell may be carried out using methods known to the person skilled in the state of the art, such as calcium phosphate transfection, DEAE-dextran mediated transfection, electroporation, lipofection, microinjection, viral infection, thermal shock, cell fusion, and so forth.
- Figure 1 Molecular model of the CN with the two anchoring sites of the substrates indicated.
- the site indicated in yellow is the binding site of the substrates that have the PxIxIT motif.
- the figure also lists the known substrates of the CN.
- Figure 2 Vector used to translate the VIVIT peptide into murine and human cells.
- FIG. 3 B16-VIVIT or 4T1-VIVIT cells and the respective control cells were cultured in suspension plates in Neurocult commercial culture medium (stem cell technologies). One million cells have been plated in a 10 cm diameter petri dish for two weeks. The selected B16-VIVIT and 4T1 -VIVIT cells were able to form spheres like stem cells while the control cells were not.
- Figure 4. Expression of stem cell genes in B16 and 4T1 cells following constitutive expression of the VIVIT peptide and subsequent culture as compared to control cells (B16-BFP and 4T1- BFP).
- Figure 5. Molecular analysis of 4T1-VIYIT and 4Tl-control by RNAseq.
- 4T1-VIVIT and 4T1- control cells were cultured in suspension plates in serum-free culture medium. One million cells were plated in 10cm diameter petri dishes for two weeks. The RNA was then extracted and RNAseq analysis was performed.
- A Dot plot showing GSEA results of 4T1-VIVIT vs 4T1- control for Gene Ontology Biological Process category. The top 10 pathways ordered by normalized enrichment score (NES) are shown. Dot colour denotes NES and dot size denotes - Iogl0(adjusted p-value).
- 4T1-VIVIT significantly upregulates genes involved in the epithelium-mesenchymal transition indicating an enrichment of stem cells in the culture.
- FIG. 6 4T1 cells, expressing or not the VTVTT peptide, were grown as spheres and then adoptively transferred in vivo in the indicated amounts. Tumor growth curves over time (days after transfer) are shown. Notably, tumor derived from 4T1 cells that express VIVIT shows a higher growth rate.
- FIG. 7 Vascularisation of B16-VIVIT or control tumours (B16-BFP). (top panels) At day 6 after in vivo tumour cell transfer, mice were treated with fluorescent dextran (injected IV). The implanted tumours were then analysed under a two-photon microscope to highlight the vessels. Note that the number of vessels is much higher in control tumours. The lower panels instead show sections of tumours implanted on day six and analysed in immunohistochemistry for expression of CD31, a marker of endothelial cells.
- Figure 8 Flow cytometry analysis of BFP protein expression in neurospheres SVZ-VIVIT (red dots) SVZ-BFP (green dots) compared with uninfected SVZ (blue dots), 8 days after infection with 100 MOI lentivirus.
- Figure 9 Images of neurosphere cultures derived from SVZ-VIVIT and SVZ-BFP at 5 and 29 days of culture in conditioned medium with EGF and FGF2.
- Figure 10 Growth curve obtained by counting neural cells of SVZ-VIVIT and SVZ-BFP cultures every 8 days during 60 days of in vitro maintenance in medium conditioned with EGF and FGF2.
- B Migration assay of SVZ-VIVIT and SVZ-BFP adult neural stem cells after 5 days of culture in transwell.
- Figure 11. A) Expansion of adult NSCs expressing the VIVIT peptide in vivo. Histological sections of mouse brain after 30 days (left panel) or 90 days (right panel) of VIVIT or BFP intracranial injection in the adult stem cells niches of the subventricular zone NSCs are stained with anti-Nestin antibody (NSC marker).
- NSC marker anti-Nestin antibody
- the lentiviral vector containing the VIVIT peptide or just the GFP protein (control vector) is described in Monica Soldi et ak, “Laboratory-Scale Lentiviral Vector Production and Purification for Enhanced Ex Vivo and In Vivo Genetic Engineering”, Molecular Therapy: Methods & Clinical Development Vol. 19, December 2020.
- tumour cell lines Two different tumour cell lines were transduced with the lentivirus expressing VIVIT or with the control lentivirus (BFP): murine melanoma tumour cells (B16), murine mammary tumour cells (4T1).
- BFP murine melanoma tumour cells
- 4T1 murine mammary tumour cells
- the cells were infected with 100 MOI of virus for 18 hours. After infection, the cells were left to rest for 72 hours, adding fresh culture medium each day. Subsequently, the infection was checked by assessing the expression levels of the reporter protein BFP in the flow cytometer. All of the lines used for the experiments showed a BFP positivity of more than 97%.
- cDNA Complementary single-stranded DNA
- high-capacity cDNA reverse transcription kits catalog number 4368814, Applied Biosystems.
- NanoDrop Thermo Scientific was used to titrate the mRNA.
- Amplification of the cDNA of Oct4, Sox2 and NanoG was performed using sybr green Master Mix.
- mice were inoculated with 2.5 x 10 5 B16 or 4T1 by subcutaneous injection into the flank at day 0. tumours were measured every 2 days for length, width and thickness using calipers.
- Tumours explanted 6 days after inoculation were incorporated into OCT (Bio-optics) freezing medium.
- the sections (5 pm) were cut on a cryostat, adhered to the Superfrost Plus slide (Thermo Scientific), fixed with acetone and blocked with PBS containing 0.3% of Triton X-100 (Sigma-Aldrich) and 10% FBS.
- the sections were then stained with purified anti-mouse CD31 antibody (1 :200) in blocking buffer, 1 hour at room temperature. Sections were washed with TBS buffer and incubated with the Rat-on-Mouse HRP - Polymer (Biocare Medical) kit.
- Dako EnVision System - HRP was used as a chromogen and counterstaining with Mayer’s Hematoxylin (Bio-optics) After dehydration, the coloured slides were mounted with Eukitt and images were acquired with a dotSlide Vsl20 (Olympus). Image analysis was performed using FIJI - ImageJ (Schindelin et al., 2012, 2015). ROI colour deconvolution was used to separate the DAB signal, and particle analysis was used to automatically recognise, count, and measure all CD31 -positive points within the total tumour area.
- the direct optical microscope (BX51; Olympus) was used for intravitally imaging the explanted tumours.
- the infrared laser source (Mai Tai HP + DeepSee, Spectra Physics, USA; with 120 fs pulses at full width at half maximum and 80 MHz repetition frequency) is coupled to the head of FV300 scanning (Olympus, Japan). All measurements were acquired using a 20 x, 0.95 - NA, 2 - mm - WD lens (XLUMPlan FI; Olympus, Japan).
- TPE allows limited photodamage of samples, simultaneous excitation of multiple fluorescent probes and deep penetration into thick tissues such as tumours.
- the fluorescence signal is directed to an unscanned unit and divided into three channels (blue, green and red channel) by two dichroic beam dividers.
- the entire microscope was surrounded by a custom-made thermostatic cabinet in which the temperature was maintained at 37°C (air thermostatation from “The Cube”; Life Imaging Services, Basel, CH) and the physiological conditions were guaranteed during the entire analysis by flowing a buffer solution at 37°C saturated with a mixture of 95% 02-5% C02. Volocity (Perkin-Elmer Inc.) was used to analyse recorded footage. The extracted traces were then analysed for the measurement of interaction time using a specially designed MatLab code (MathWorks Inc.).
- 4T1 a breast tumour model
- B16 a melanoma model.
- Figure 2 shows that undergoes self-cleavage leading to expression of the two separate peptides (BFP and VIVIT).
- tumor cells transduced with the VIVIT peptide and control cells were cultured for approximately two weeks, undergoing at least two 1:10 dilution steps after reaching complete confluence. At the end of the two weeks all the BFP cells continued to grow in adhesion or aggregated in random structures, while the cells expressing the VIVIT peptide grew into a sphere, a typical phenotypic condition of stem cells ( Figure 3). The cells were analyzed for the expression of stem cell genes ( Figure 4). B16 and 4T1 cells were also subjected to further analysis. First, an RNAseq analysis of 4T1 cells was performed.
- B16-VIVIT cells and B16-control cells were transferred in vivo into recipient mice of the same genetic background and B16-VIVIT tumors were found to be poorly vascularized compared to control tumors which had a high degree of vascularization (Figure 7).
- mice Four-month-old c57bl6 mice (ENVIGO breeding, Bresso, Italy) were euthanised by cervical dislocation. Brains were removed and placed in the PG solution (saline solution containing 30% glucose). The subventricular zone (SVZ) of the forebrain was taken by performing a 6 to 8 mm coronal cut from the olfactory bulbs and was shredded into small fragments. The tissue fragments were then digested with a solution containing papain, incubated at 45°C to 37°C under mild stirring.
- PG solution saline solution containing 30% glucose
- the tissue was resuspended in 1 ml of EBSS (Eagle’s basic salt solution free of calcium and magnesium) and mechanically dissociated with the lOOOul micropipette. After further centrifugation the cells were counted and plated at a concentration of 10 4 cells/cm 2 in the Neurocult TM commercial culture medium (Stem cells technologies).
- the neurospheres were mechanically dissociated to a single-cell suspension and reinserted into the specific culture medium to regenerate secondary and tertiary neurospheres for up to 60 days of culture. Infection of SVZ neurospheres by lentiviral vector expressing VIVIT
- the lentiviral vector containing the VIVIT peptide or only the BFP protein are described in Monica Soldi et ah, “Laboratory-Scale Lentiviral Vector Production and Purification for Enhanced Ex Vivo and In Vivo Genetic Engineering”, Molecular Therapy: Methods & Clinical Development, Vol. 19, December 2020.
- Neural stem cells generated from the SVZ zone of the brain of C57bl/6 mice were harvested and dissociated to single cell status, then replanted into complete culture medium (NeurocultTM, Stem cells technologies). After 24 hours of dissociation, when the cells were still in the single cell phase, they were infected with 100 MOI of virus for 18 hours. After infection, the cells were left to rest for 72 hours, adding fresh culture medium each day. Subsequently, the infection was checked by assessing the expression levels of the reporter protein BFP in the flow cytometer. Analysis of adult NSC migration
- the lentiviral vector containing the VIVIT peptide or only the BFP protein was injected into the subventricular area of the brain of four-month-old c57bl6 mice (ENVIGO breeding, Bresso, Italy) using stereotaxic surgery.
- the following stereotaxic coordinates were used: 0.6mm anteroposterior, 1.6mm mediolateral, 3-2 dorsoventral.
- the brain was removed, frozen in OCT and cut in sections of 20um. Subsequently, immunohistochemical staining of the Nestin protein, a marker of neural stem cells, was performed.
- mice that express an inducible form of VIVIT selectively in the intestinal stem cells.
- transgenic mice that have the VIVIT insert flanked by loxP sequences and transgenic mice expressing CRE recombinase under the LGR5 gene promoter (present only in intestinal stem cells).
- CRE activation is induced by tamoxifen treatment. Once activated, the CRE protein recognizes the loxP sites that flank the VIVIT and by cutting in correspondence with these it allows VIVIT expression.
- LGR5-CRE-VIVIT mice were treated or not (control) for three weeks every 7 days with 1.2 mg of tamoxifen administered by oral gavage. Mice were then euthanized by cervical dislocation, the colon was extracted and frozen in OCT. Histological sections of 5um were performed and visualized with confocal microscopy. In these animals, the GFP reporter is expressed in LGR5 positive cells, while the expression of the TdTomato reporter is generated only when VIVIT is expressed.
- SVZ-VIVIT neurospheres remained much more viable and were always numerically superior to SVZ-BFP cultures ( Figure 9).
- the SVZ-VIVIT and BFP neurospheres were maintained in culture medium containing EGF and FGF2 until their natural senescence was reached, which is observed in vitro between 60 and 90 days.
- cells were dissociated, counted, and replated every 8 days, and a growth curve was generated to evaluate a possible effect of VIVIT on neurosphere expansion (Figure 10A).
- This monitoring showed that chronic expression of the VIVIT peptide in SVZ stem cells keeps the neurospheres in their stem state and prevents their natural senescence. The final effect is therefore to enrich adult neural stem cultures strongly (Figure 10A).
- the migratory capacity of the NSCs- VIVIT compared to the NSCs-BFP was also assessed.
- the cells were plated in a transwell and after 5 days their ability to migrate to the slide placed under the transwell was evaluated. As shown in Figure 10B, VIVIT- expressing cells exhibit greater migratory capacity. This result shows that the expression of VIVIT induces the expansion of non-quiescent-activated adult stem cells, characterized by a greater migratory capacity.
- the lentiviral vector containing the VIVIT peptide or only the BFP protein (control vector) was injected into the subventricular area of the brain of four-month-old c57bl6 mice.
Landscapes
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Life Sciences & Earth Sciences (AREA)
- Biomedical Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- Organic Chemistry (AREA)
- Chemical & Material Sciences (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Developmental Biology & Embryology (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Cell Biology (AREA)
- Oncology (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
Abstract
The present invention refers to a method for expanding activated adult stem cells or tumor stem cells and/or for maintaining an activated adult stem cell or tumor stem cell culture in vitro in a stem state and/or preventing its senescence and/or differentiation and/or for enriching a cell culture with activated adult stem cells or tumor cells, the method comprising stably providing a target stem cell or target stem cell culture with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif, where said target stem cell is an adult stem cell or tumor stem cells
Description
A MOLECULE CAPABLE OF INHIBITING THE INTEGRATION OF CALCINEURIN WITH A SUBSTRATE AND USES THEREOF FIELD OF THE INVENTION
The present invention relates to a method for expanding activated adult stem cells or tumor stem cells and/or for maintaining an activated adult stem cell or tumor stem cell culture in vitro in a stem state and/or preventing its senescence and/or differentiation and/or for enriching a cell culture with activated adult stem cells or tumor cells, the method comprising stably providing a target stem cell or target stem cell culture with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif, where said target stem cell is an adult stem cell or tumor stem cells. The invention also refers to cells obtainable by the method and uses thereof and to a molecule able to chronically inhibit the interaction of calcineurin (CN) with a substrate containing the PxIxIT motifs for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
PRIOR ART
Calcineurin (CN) is a ubiquitously expressed serine (Ser)/threonine (Thr) phosphatase and is composed of a catalytic subunit A (CNA), and a regulatory subunit B (CNB). CN is activated by calmodulin or calpain following an increase in intracellular calcium levels (1). In the calmodulin- mediated activation process, calcium binds to the CNB regulatory sites inducing a conformational change on the CN that allows the interaction of the CN with the calmodulin/calcium complex. This interaction leads to the exposure of the CN catalyst site. When the CN is activated by calpain, the increase in calcium induces the protease activity of calpain that cuts the CN autoinhibitory domain, generating a constitutively active form (2).
CN interacts with substrates that have two main binding sites: the PxIxIT motif, which is considered the primary docking site, and the Lx VP motif (3). Proteins containing either or both of these motifs can be partitioned into regulators and effectors. Regulators are proteins that control CN activity by modulating its subcellular activation and localisation or by recruiting effector molecules. Effectors are transcription factors or kinases. For example, among ubiquitously expressed CN substrates containing the PxIxIT motif, Cabinl, RCAN1/DSCR1, and AKAP79 show regulator functions, while Dynamin 1 GTPase, MKK7 kinase, and NFAT family of transcription factors have effector functions. Clinical and experimental trials have shown the role of CN in controlling cancer progression. Indeed, activation of CN in human colorectal cancer (CRC) is correlated with increased mortality, while inhibiting CN phosphatase function induces tumour regression (4). In line with these results, CN is activated in triple-
negative breast cancers and is responsible for tumour growth and metastasis formation (5). A correlation between CN and tumourigenesis has also been observed in other cancers, including melanoma, leukaemia, glioblastoma and cancer of the liver, pancreas, bladder, ovary and prostate (6)(7)(8)(9)(10)(11). Pro-X-Ile-X-Ile-Thr (PxIxIT) sequence peptides (SEQ ID NO:21), derived from the conserved CN-binding motif found in NFAT proteins, compete with NFAT for CN- binding, compromising NFAT binding and dephosphorylation as shown in enzyme assays. In particular, the Val-Ile-Val-Ile-Thr (VIVIT) oligopeptide (SEQ ID NO:l) 16mero possesses a high affinity for CN and effectively inhibits NFAT and its activity, but not NF-kB transcription factor activity as indicated by the activation of the respective genes (12). Thus, the VIVIT peptide is more selective than CsA and FK506, which inhibit the activation of both transcription factors as they block the phosphatase activity of CN. This peptide was identified by random screening of a peptide library. Competing for the main CN binding site, it inhibits the interaction between CN and, not only NFAT, but any substrate containing the PxIxIT motif (Figure 1) (12). It has been shown that the NFAT family of transcription factors is required for differentiation of embryonic stem cells. Indeed, by blocking the activation of NFAT or the phosphatase activity of the CN, the stem cells do not differentiate under conditions that normally induce differentiation (subtraction of growth factors that allow the maintenance of sternness) (Xiang Li et ak, “Calcineurin-NFAT signalling critically regulates early lineage specification in mouse embryonic stem cells and embryos”, Cell Stem Cell , Vol. 8, 46-58, January 2011).
Adult stem cells (also known as somatic stem cells or tissue stem cells) are rare populations of undifferentiated cells found in the body during most of the postnatal life. They are defined as multipotent in that they are able to self-renew but only give rise to mature cells of the tissue in which they reside. Their progeny replaces cells lost due to tissue turnover or damage, thus ensuring the maintenance of tissue homeostasis. Adult stem cells are usually kept in a quiescent state but, once activated, proliferate to reconstitute damaged tissues. Their division is asymmetrical in that a stem cell, which maintains the tissue niche, and a precursor, which differentiates into the mature cell, are generated from a stem cell. Multiple organs are known to possess a stem niche. Some well-researched examples in mammals include tissues with high regenerative capacity such as blood, skin, intestine, and others to lesser or almost no regenerative capacity, such as the brain. Generally, it is thought that adult stem cells are all the more abundant in a given tissue the greater the latter’s capacity (and need) to regenerate. For example, the adult neural stem cells are numerically small and are located in specific areas of the brain: the hippocampus, the subventricular area and the olfactory bulbs. Considering the easier accessibility of adult stem cells than embryonic stem cells, and considering the extraordinary
therapeutic potential in the field of regenerative medicine, there is increasing attention to the methods of isolation and characterisation of these stem cells residing in adult tissues. However, the biggest limitation observed is the difficulty of maintaining adult stem cells in culture and expanding them in an in vitro system to obtain an adequate number for the reinfusion for the shelter of tissue damage.
Within tumours, cancer stem cells (CSCs) mediate primary and acquired resistance to conventional and target therapies. CSCs have similar characteristics to stem cells and have been isolated from many cancers. They are generally characterised by a differentiating potential (recapitulating intratumour heterogeneity), by slow proliferation phenotype, high expression of DNA damage repair mechanisms, anti-apototic proteins, immune system evasion mechanisms (13), and increased activity of the sternness pathways (i.e. Wnt and PI3K/Akt) (14)(15). Isolating CSCs is very difficult because no specific markers are known. There are therefore no standardised protocols, and each laboratory concerned uses non-standardised, secret and expensive protocols. In addition, CSCs may not always be obtained from liquid biopsies or solid tumours. Since CN acting with its phosphatase activity on targets such as NFAT, induces differentiation of embryonic stem cells (Calcineurin-NFAT Signaling Critically Regulates Early Lineage Specification in Mouse Embryonic Stem Cells and Embryos Xiang Li, Lili Zhu, Acong Yang, Jiangwei Lin, Fan Tang, Shibo Jin,l Zhe Wei, Jinsong Li, and Ying Jin Cell Stem Cell 8, 46-58, January 7, 2011), blocking this activity, i.e. the possibility of interacting with substrates containing the PxIxIT motif, could allow CSCs and adult stem cells to be expanded by inhibiting differentiation.
There is therefore still a need to obtain an agent capable of blocking stem cell differentiation. SUMMARY OF THE INVENTION
The present authors found that tumor cells expressing a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif maintained an undifferentiated condition with a migratory phenotype both in vitro and in vivo.
Therefore, an object of the invention is a method for expanding activated adult stem cells or tumor stem cells and/or for maintaining an activated adult stem cell or tumor stem cell culture in vitro in a stem state and/or preventing its senescence and/or differentiation and/or for enriching a cell culture with activated adult stem cells or tumor cells, the method comprising providing, preferably stably providing, a target stem cell or target stem cell culture with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif,
where said target stem cell is an adult stem cell or tumor stem cells.
Preferably, the provision, preferably stably provision, of said molecule to said target stem cell or target stem cell culture allows to obtain activated adult stem cells or tumor stem cells or cultures thereof.
Preferably, the activated adult stem cells or tumor stem cells are cells in active proliferation and/or with migratory capacity.
Preferably, said target cells are adult stem cells of various tissues, preferably neural stem cells, intestinal stem cells, tumor stem cells, preferably of human or mouse origin, more preferably said neural stem cells are obtained from the olfactory bulb and they are preferably human. Preferably, said molecule is a competitor for the binding site of the CN with the nuclear factor of activated T-cells (NFAT).
Preferably, said molecule is expressed, preferably stably expressed, by the target stem cell or target stem cell culture.
Preferably, said molecule is a peptide comprising or consisting of the sequence SEQ ID NO:l VIVIT, SEQ ID NO: 2 CGGGKMAGP VIVIT GPHEE, SEQ ID NO:3 CGGVIVIT, SEQ ID NO:4 CGGGKMAGPHPVIVITGPHEE or SEQ ID NO:5 C GGGM AGP VI VIT GPHEE . Preferably, the molecule further comprises an amino acid sequence which allows passage through the cell membrane of an eukaryotic cell, preferably said sequence selected from the following group poly-arginine, Arg 11 (RRRRRRRRRRR/SEQ ID NO: 6) ;
Tat / RKKRRQRRR/SEQ ID NO: 7;
Penetratine / RQIKIWF QNRRMKWKK/SEQ BD NO: 8;
Buforin II / TRS SRAGLQFPVGRVHRLLRK/SEQ ID NO: 9; Transportan / GWTLN S AGYLLGKTNLKALAALAKKIL/SEQ ID NO: 10;
MAP (model amphipathic peptide) / KLALKLALKALKAALKLA/SEQ ID NO: 11; K-FGF / AAVALLPAVLLALLAP/SEQ ID NO: 12;
Ku70 / VPMLK/SEQ ID NO: 13
Ku70 / PMLKE/SEQ ID NO: 14; Prion / MANLGYWLLALFVTMWTDVGLCKKRPKP/SEQ ID NO: 15; pVEC / LLIILRRRIRKQAHAHSK/SEQ ID NO: 16;
Pep-1 / KETWWETWWTEWSQPKKKRKV/SEQ ID NO: 17;
SynBl / RGGRLSYSRRRFSTSTGR/SEQ ID NO: 18;
Pep-7 / SDLWEMMMV SLACQY/SEQ ID NO: 19; and HN-I / TSPLNIHNGQKL/SEQ ID NO: 20
Preferably, the provision, preferably stably provision, of the molecule to the target cell comprises:
- the delivery of an expression cassette of the molecule to said target cell where said cassette is preferably comprised in a replicable vector, preferably a viral vector, preferably an adeno-associated virus (AAV), an unintegrated lentivirus, an adenoviral or retroviral vector, or a non-viral vector and / or
- the delivery of nucleic acid encoding the molecule, including mRNA, preferably linked to a nanoparticle, such as a nanovector.
In a preferred embodiment of the invention, the method comprises the steps of: i. culturing neural stem cells in vitro in an appropriate culture medium comprising growth factors, e.g. EGF and / or FGF2, for 5-20 days, preferably 15 days, ii. perform at least one dissociation of the cultured cells and obtain neurospheres, iii. provide the neurospheres with a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif as defined in any one claims 3-5, iv. culture the neurospheres in a culture medium comprising growth factors, for example EGF and / or FGF2, until their natural senescence is reached, preferably for 60-90 days, and optionally v. isolate stem cell colonies from the culture resulting from the step iv.
In a preferred embodiment of the invention, the method comprises the steps of: i. Cultivate in vitro tumor cells, preferably a tumor line, in an appropriate culture medium comprising growth factors, for example EGF and / or FGF2, ii. Perform at least 3 culture passages, iii. provide the cells with a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif as defined in any one of claims 3-5, iv. Perform at least 3 culture passages, v. Bringing culture to a state of complete confluence each time and monitoring the formation of spheres, e.g.7-10 days and optionally vi. isolate stem cell colonies from the culture resulting from the step v.
Preferably, step iii. comprises delivery with a vector expressing the molecule as defined herein and / or comprising a nucleic acid encoding said molecule.
Preferably, the vector is a viral vector, preferably a lentivirus.
Preferably, said molecule is a peptide comprising or consisting of the sequence SEQ ID NO:l VIVIT
Another object of the invention is a cell obtainable from the method as defined herein, preferably for medical use, more preferably for use in cell or tissue regeneration.
A further object of the inventions is a cell population comprising at least one cell as defined herein, preferably for medical use, more preferably for use in cell or tissue regeneration. Another object of the invention is the use of the cell or population according as defined herein for in vitro experimentation.
A further object of the invention is a molecule able to chronically inhibit the interaction of calcineurin (CN) with a substrate containing the PxIxIT motifs as defined herein for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
Preferably, the activated adult stem cells are cells in active proliferation and/or with migratory capacity.
Preferably, the activated adult stem cells are obtained by providing, preferably stably providing, said molecule to adult stem cells and/or wherein the activated adult stem cells express, preferably stably express, said molecule.
Another object of the invention is a nucleic acid encoding the molecule as defined herein for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
A further object of the invention is a vector expressing the molecule as defined herein or comprising the nucleic acid as defined herein or nanoparticle, such as a nanovector, comprising the molecule as defined herein or comprising the nucleic acid as defined herein for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
Another object of the invention is use of the molecule as defined herein, of the nucleic acid according as defined herein or of the vector as defined herein or the nanoparticle as defined herein to stably inhibit the bond between the CN and one or more of its specific ligands. Another object of the invention is a cell comprising and / or expressing the molecule as defined herein or the nucleic acid as defined herein or the vector as defined herein and / or engineered to comprise and / or express said molecule or said nucleic acid or said vector, preferably for medical use, more preferably in cell or tissue regeneration.
Preferably the cell stably express said molecule.
Other objects of the invention are: a cell population comprising at least one cell as defined herein, preferably for medical use, more preferably in cell or tissue regeneration, and the use of the cell or population as defined herein for in vitro experimentation.
DETAILED DESCRIPTION OF THE INVENTION
The molecule according to the invention can be selected from, but is not limited to, nucleic acids, peptides, proteins, antibodies, sugars, synthetic polymers, polynucleotides, fatty acids, small organic molecules or combinations thereof.
The term “the activated adult stem cells” or “activated tumor stem cells” (or cultures thereof) means adult stem cells or tumor stem cells in active proliferation and/or with migratory capacity (or cultures thereof), preferably in active proliferation and with migratory capacity. Such cells may also be defined as non-quiescent or non-quiescent-activated.
Such cells (or cultures thereof) are obtained by respectively providing target adult stem cells or target tumor cells (or cultures thereof) with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif,
Preferably such molecule is provided to the target cells, e.g. by genetically modifying the cell, e g. by transduction, transformation or transfection with the polynucleotide or with the vector as described herein.
Preferably such molecule is stably provided to the target cells, e.g. by genetically modifying the cell, e.g. by transfection with the polynucleotide or with the vector as described herein. Preferably the target stem cell or target stem cell culture or the activated adult stem cells or activated tumor stem cells transiently or stably express the above molecule. The expression of VIVIT indeed induces the expansion of activated (or non-quiescent-activated) adult stem cells, characterized by a greater migratory capacity compared to cells that do not express VIVT peptide.
For “active proliferation” it intended e.g. a cell state in which stem cells are able to proliferate, proceeding toward the various phases of the cell cycle, rather than being blocked in GO phase. The opposite of ‘active proliferation’ are ‘quiescence’, a cell state in which stem cells do not proliferate but do not die, they simply remain in the GO phase of the cell cycle until they receive specific signals.
The terms “tumor stem cells” or “cancer stem cells” may be used interchangeably.
The step of providing target adult stem cells or target tumor cells (or cultures thereof) with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif may comprise or consists of:
- the delivery of an expression cassette of the molecule to said target cell where said cassette is preferably comprised in a replicable vector, preferably a viral vector, preferably an adeno- associated virus (AAV), an unintegrated lentivirus, an adenoviral or retroviral vector, or a non- viral vector and / or
- the delivery to said target cell of nucleic acid encoding the molecule, including mRNA, preferably linked to a nanoparticle, such as a nanovector and/or
- the delivery to said target cell of a vector expressing the molecule as defined herein and / or comprising a nucleic acid encoding said molecule.
The cells of the invention may also be defined as host cells or genetically modified cell.
Preferably, the stem cells of the invention or the cells of the invention are not human embryonic cells.
The terms “expression vector” or “vector” refer to a nucleic acid that transduces, transforms or infects a host cell, causing the cell to produce nucleic acids and/or proteins other than those that are native to the cell, or causing it to express nucleic acids and/or proteins in a manner not native to the cell.
The term “endogenous” refers to a molecule (e g. A nucleic acid or a polypeptide) or process that occurs naturally, e.g. in a nonrecombinant host cell.
The terms “polynucleotide” and “nucleic acid” used interchangeably herein refer to a polymeric form of nucleotides of any length, either ribonucleotides or deoxynucleotides. Thus, this term includes, but is not limited to, single-, double-, or multi-stranded DNA or RNA, genomic DNA, cDNA, DNA-RNA hybrids, or a polymer comprising purine and pyrimidine bases, or other natural, chemically or biochemically modified, non-natural, or functionalised nucleotide bases. The terms “peptide”, “polypeptide” and “protein” are used interchangeably, and refer to a polymeric form of amino acids of any length, which can include coded and non-coded amino acids, chemically or biochemically modified or derivatised amino acids, and polypeptides having modified peptide backbones.
As used herein, the terms “operon” and “single transcription unit” are used interchangeably to refer to two or more contiguous coding regions (nucleotide sequences that encode a gene product such as an RNA or a protein) that are coordinately regulated by one or more controlling elements
(e.g. a promoter). As used herein, the term “gene product” refers to an RNA encoded by DNA (or vice versa) or protein that is encoded by an RNA or DNA, where a gene will typically comprise one or more nucleotide sequences that encode a protein, and may also include introns and other non-coding nucleotide sequences.
As used herein, the term “heterologous nucleic acid” refers to a nucleic acid wherein at least one of the following statements is true: (a) the nucleic acid is foreign (“exogenous”) to (that is, not naturally found in) a given host cell; (b) the nucleic acid comprises a nucleotide sequence that is naturally found in (that is, is “endogenous”) to a given host cell, but the nucleotide sequence is produced in an unnatural (for example, greater than expected or greater than naturally found) amount in the cell; (c) the nucleic acid comprises a nucleotide sequence the sequence of which differs from an endogenous nucleotide sequence, but the nucleotide sequence encodes the same protein (having the same or substantially the same amino acid sequence) and is produced in an unnatural (for example, greater than expected or greater than naturally found) amount in the cell; or (d) the nucleic acid comprises two or more nucleotide sequences that are not in the same relationship with each other in nature (e.g. nucleic acid is recombinant).
The term “recombinant”, as used herein, means that a particular nucleic acid (DNA or RNA) is the product of various combinations of cloning, restriction, and/or ligation steps, resulting in the formation of a construct having a structural coding sequence or non-coding sequence distinguishable from endogenous nucleic acids found in natural systems. Generally, DNA sequences encoding the structural coding sequence can be assembled from cDNA fragments and short oligonucleotide linkers, or from a series of synthetic oligonucleotides, to provide a synthetic nucleic acid which is capable of being expressed from a recombinant transcriptional unit contained in a cell or in a cell-free transcription and translation system. Such sequences can be provided in the form of an open reading frame uninterrupted by internal non- translated sequences, or introns, which are typically present in eukaryotic genes. Genomic DNA comprising the sequences of interest can also be used in the formation of a recombinant gene or a transcriptional unit. Sequences of non-translated DNA may be present at 5’ or 3’ of the open reading frame, where such sequences do not interfere with manipulation or expression of the coding regions, and may indeed act to modulate production of a desired product by various mechanisms (see “DNA regulatory sequences”, below).
Thus, the term “recombinant” polynucleotide or nucleic acid, for example, refers to one which is not naturally occurring, e.g. which is made by the artificial combination of two otherwise separated segments of sequence with human intervention.
This artificial combination is often accomplished either by chemical synthesis means or by the artificial manipulation of isolated segments of nucleic acids, e.g. by genetic engineering techniques. Generally, this is done in order to replace a codon with a redundant codon coding for the same or a conservative amino acid, typically by introducing or removing the sequence recognition site at the same time. Alternatively, it is performed to join together nucleic acid segments with desired functions to generate a desired combination of functions. This artificial combination is often accomplished either by chemical synthesis means or by the artificial manipulation of isolated segments of nucleic acids, e.g. by genetic engineering techniques.
The term “transformation” or “genetic modification” refers to a genetic change, permanent or transient, induced in a cell following introduction of a new nucleic acid. Thus, a “genetically modified cell” is a host cell into which a new (e.g. exogenous; heterologous) nucleic acid has been introduced. A genetic change (“modification”) can be accomplished either by incorporation of the new DNA into the genome of the host cell, or by transient or stable maintenance of the new DNA as an episomal element. In eukaryotic cells, a permanent genetic change is generally achieved by introducing DNA into the cell’s genome. In prokaryotic cells, a permanent genetic change can be introduced into the chromosome or via extrachromosomal elements, such as plasmids and expression vectors, which may contain one or more selectable markers to aid in their maintenance in the recombinant host cell.
The terms “DNA regulatory sequences”, “control elements”, and “regulatory elements”, used interchangeably herein, refer to transcriptional and translational control sequences, such as promoters, enhancers, polyadenylation signals, terminators, protein degradation signals, and the like, that provide for and/or regulate expression of a coding sequence and/or production of an encoded polypeptide in a host cell.
The term “operably linked” refers to a juxtaposition wherein the components so described are in a relationship that enables them to function in the intended manner. For instance, a promoter is operatively linked to a nucleotide sequence if the promoter affects the transcription or expression of the nucleotide sequence.
A “host cell,” as used herein, denotes an in vitro eukaryotic cell (e.g. a yeast cell), which eukaryotic cell can be, or has been, used as a recipient for a nucleic acid, and comprises the progeny of the original cell which has been genetically modified with the nucleic acid. It is understood that the progeny of a single cell may not necessarily be completely identical in morphology or in genomic or total DNA complement as the original parent, due to natural, accidental or deliberate mutation. A “recombinant host cell” (also referred to as a “genetically modified host cell”) is a host cell into which has been introduced a heterologous nucleic acid,
e.g. an expression vector. For example, a suitable eukaryotic host cell is a genetically modified eukaryotic host cell by virtue of introduction into a suitable eukaryotic host cell a heterologous nucleic acid, e g. an exogenous nucleic acid that is foreign to the eukaryotic host cell, or a recombinant nucleic acid that is not normally found in the eukaryotic host cell.
As used herein, the term “isolated” is meant to describe a polynucleotide, a polypeptide, or a cell that is in an environment different from that in which the polynucleotide, the polypeptide, or the cell naturally occurs. The term “polynucleotides” includes DNA, RNA, siRNA and miRNA, whether viral, bacterial, plant or animal (e.g. mammalian), synthetic, single- or double-stranded, comprising natural, non-natural or chemically modified nucleotides. Furthermore, the molecule can also include labelled molecules, such as radioactively or fluorophore labelled molecules.
In the context of the present invention, when reference is made to specific DNA sequences, it is intended that RNA molecules identical to said polynucleotides are also comprised in the invention, except that the RNA sequence contains uracil instead of thymine and the skeleton of the RNA molecule contains ribose instead of deoxyribose, RNA sequences complementary to the sequences described therein, functional fragments, mutants and derivatives thereof, proteins encoded by them, functional fragments, mutants and derivatives thereof. Also included in the present invention are nucleic acid or amino acid sequences derived from the nucleotide or amino acid sequences shown in the present invention, e.g. functional fragments, mutants, derivatives, analogues and sequences with a % identity of at least 70, at least 80, at least 85 at least 90, 91, 92, 93, 94, 95, 96, 97, 98 or 99 % with the sequences mentioned above. Further molecules capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif may be selected by a person skilled in the state of the art using cellular screening methodologies.
Preferably the CSCs were obtained from murine melanoma, e.g. from B16 cells and/or from murine triple negative breast cancer e.g. 4T1 cells.
The cells are preferably murine neural stem cells obtained from the subventricular area of the brain and/or intestinal stem cells extracted from the mouse intestine
In the context of the present invention, the term “complete confluence” denotes the state in which the cells are at such a density that there is no space between them and can be assessed by means of a microscope. The term denotes, for example, a confluence of more than 80 per cent.
Any method known to the person skilled in the state of the art to provide the molecule of the invention to the cells can be used in the present invention. In a preferred embodiment of the invention, the cells described herein are characterised by the fact that exogenous nucleic acid has been introduced by the use of a viral vector, for example in the form of a viral expression
construct, more preferably a lentiviral or retroviral vector. Alternatively, the cells described herein are characterised by the fact that exogenous nucleic acid is or comprises a construct of non-viral expression.
Preferably, in the vector as described above, the polynucleotide (or exogenous nucleic acid) is under the control of a promoter capable of expressing said polynucleotide efficiently.
The polynucleotide sequence in the vector is operatively linked to an appropriate expression control sequence (promoter) to direct the synthesis of the mRNA. Examples of promoters include the immediate promoter of early cytomegalovirus (CMV) genes, thymidine kinase HSV, early and late SV40, LTRs from retrovirus, preferably derived from murine leukemia viruses (MLV). The vectors may also contain one or more selectable gene markers.
As used herein, the term “genetically modified cell” refers to a host cell that has been transduced, transformed or transfected with the polynucleotide or with the vector as described above.
The introduction of the polynucleotide or vector previously described in the host cell may be carried out using methods known to the person skilled in the state of the art, such as calcium phosphate transfection, DEAE-dextran mediated transfection, electroporation, lipofection, microinjection, viral infection, thermal shock, cell fusion, and so forth.
It should be noted that, as used herein and in the appended claims, the singular indefinite articles “a” and “an” and the singular or plural definite article “the” include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to “a protein” includes a plurality of such proteins, and so forth.
The present invention will now be illustrated by means of non-limiting examples, with reference to the following figures.
Figure 1. Molecular model of the CN with the two anchoring sites of the substrates indicated. In particular, the site indicated in yellow is the binding site of the substrates that have the PxIxIT motif. The figure also lists the known substrates of the CN.
Figure 2. Vector used to translate the VIVIT peptide into murine and human cells.
Figure 3. B16-VIVIT or 4T1-VIVIT cells and the respective control cells were cultured in suspension plates in Neurocult commercial culture medium (stem cell technologies). One million cells have been plated in a 10 cm diameter petri dish for two weeks. The selected B16-VIVIT and 4T1 -VIVIT cells were able to form spheres like stem cells while the control cells were not. Figure 4. Expression of stem cell genes in B16 and 4T1 cells following constitutive expression of the VIVIT peptide and subsequent culture as compared to control cells (B16-BFP and 4T1- BFP).
Figure 5. Molecular analysis of 4T1-VIYIT and 4Tl-control by RNAseq. 4T1-VIVIT and 4T1- control cells were cultured in suspension plates in serum-free culture medium. One million cells were plated in 10cm diameter petri dishes for two weeks. The RNA was then extracted and RNAseq analysis was performed. (A) Dot plot showing GSEA results of 4T1-VIVIT vs 4T1- control for Gene Ontology Biological Process category. The top 10 pathways ordered by normalized enrichment score (NES) are shown. Dot colour denotes NES and dot size denotes - Iogl0(adjusted p-value). Notably, 4T1-VIVIT significantly upregulates genes involved in the epithelium-mesenchymal transition indicating an enrichment of stem cells in the culture. B) Overlap between the input gene list and the Stem Cell types present in StemChecker. In left panel, the overlap significance is plotted as -loglO(p-value); in right panel, table with the results is shown. C) Overlap between the input gene list and the Transcription Factors. In left panel, the overlap significance is plotted as -loglO(p-value); in right panel, the table displays the significance of enrichment of genes included as transcription factor targets among the input genes found in StemChecker. Significance (p-value) is calculated by the hypergeometric test and the adjusted p-value is calculated by Bonferroni correction.
Figure 6. 4T1 cells, expressing or not the VTVTT peptide, were grown as spheres and then adoptively transferred in vivo in the indicated amounts. Tumor growth curves over time (days after transfer) are shown. Notably, tumor derived from 4T1 cells that express VIVIT shows a higher growth rate.
Figure 7. Vascularisation of B16-VIVIT or control tumours (B16-BFP). (top panels) At day 6 after in vivo tumour cell transfer, mice were treated with fluorescent dextran (injected IV). The implanted tumours were then analysed under a two-photon microscope to highlight the vessels. Note that the number of vessels is much higher in control tumours. The lower panels instead show sections of tumours implanted on day six and analysed in immunohistochemistry for expression of CD31, a marker of endothelial cells.
Figure 8. Flow cytometry analysis of BFP protein expression in neurospheres SVZ-VIVIT (red dots) SVZ-BFP (green dots) compared with uninfected SVZ (blue dots), 8 days after infection with 100 MOI lentivirus.
Figure 9. Images of neurosphere cultures derived from SVZ-VIVIT and SVZ-BFP at 5 and 29 days of culture in conditioned medium with EGF and FGF2.
Figure 10. Growth curve obtained by counting neural cells of SVZ-VIVIT and SVZ-BFP cultures every 8 days during 60 days of in vitro maintenance in medium conditioned with EGF and FGF2. B) Migration assay of SVZ-VIVIT and SVZ-BFP adult neural stem cells after 5 days of culture in transwell.
Figure 11. A) Expansion of adult NSCs expressing the VIVIT peptide in vivo. Histological sections of mouse brain after 30 days (left panel) or 90 days (right panel) of VIVIT or BFP intracranial injection in the adult stem cells niches of the subventricular zone NSCs are stained with anti-Nestin antibody (NSC marker). Images show the expansion of NSCs in brain of mice who received VIVIT peptide as compared to control mice (BFP treatment) and their migration toward the corpus callosum (CC) (arrows). The expansion of NSCs in distal sections from the site of injection (right panels) observed in VIVIT-treated mice indicates an increase in their ability to migrate along the brain as compared to NSCs of BFP -treated mice.
B) Expansion of intestinal adult stem cells (identify as cells that express LGR5 protein, also referred as LGR5 positive cells) expressing the VIVIT peptide in vivo. For these experiments we used mouse model in which the expression of VIVIT is induced by tamoxifen treatment selectively in cells that express LGR5 protein. Images shows intestinal section of LGR5-CRE- VIVIT mice that were treated with tamoxifen once a week for 3 weeks to obtain the expression of VIVIT peptide. Untreated mice were used as control. (Right panel). Images show the induction of VIVIT expression (red) in tamoxifen treated mice only in LGR5 positive cells (green). (Left panel) Images shows only the LGR5 staining. Notably, an increase in the number of intestinal stem cells (LGR5 positive, green) in mice that express VIVIT peptide as compared to control mice has been observed.
EXAMPLE 1 Materials and Methods
Infection of tumour cell lines with lentiviral vector expressing VIVIT
The lentiviral vector containing the VIVIT peptide or just the GFP protein (control vector) is described in Monica Soldi et ak, “Laboratory-Scale Lentiviral Vector Production and Purification for Enhanced Ex Vivo and In Vivo Genetic Engineering”, Molecular Therapy: Methods & Clinical Development Vol. 19, December 2020.
Two different tumour cell lines were transduced with the lentivirus expressing VIVIT or with the control lentivirus (BFP): murine melanoma tumour cells (B16), murine mammary tumour cells (4T1). The cells were infected with 100 MOI of virus for 18 hours. After infection, the cells were left to rest for 72 hours, adding fresh culture medium each day. Subsequently, the infection was checked by assessing the expression levels of the reporter protein BFP in the flow cytometer. All of the lines used for the experiments showed a BFP positivity of more than 97%.
Culture condition
All tumour cell lines transduced with the lentivirus expressing the VIVIT or the control lentivirus were plated at the physiological confluence (2 million cells in T 175 cm2 flask), in commercial medium NeuroCult ™ (Neural Stem Cell Culture Media) added with 1% glutamine and 1% penicillin / streptomycin and placed in an incubator at 37 ° C with 5% C02. After 48 hours the cells reached maximum physiological confluence and were divided 1:10 for two consecutive times. At this point the cells were used for analyses.
Real-time PCR
Expression of sternness genes was performed by real-time PCR in both in vitro grown cell samples and tumours surgically removed from animals. Samples were homogenised in the TRIzol reagent, then RNA was extracted using Quick-RNA MiniPrep or microPrep kits (Zymo, cat R2050 and R1051 research respectively). Complementary single-stranded DNA (cDNA) was synthesised using high-capacity cDNA reverse transcription kits (catalogue number 4368814, Applied Biosystems). NanoDrop (Thermo Scientific) was used to titrate the mRNA. Amplification of the cDNA of Oct4, Sox2 and NanoG was performed using sybr green Master Mix.
Inoculation of tumours
Mice were inoculated with 2.5 x 105 B16 or 4T1 by subcutaneous injection into the flank at day 0. tumours were measured every 2 days for length, width and thickness using calipers.
Histological analysis of explanted tumours
Tumours explanted 6 days after inoculation were incorporated into OCT (Bio-optics) freezing medium. The sections (5 pm) were cut on a cryostat, adhered to the Superfrost Plus slide (Thermo Scientific), fixed with acetone and blocked with PBS containing 0.3% of Triton X-100 (Sigma-Aldrich) and 10% FBS. The sections were then stained with purified anti-mouse CD31 antibody (1 :200) in blocking buffer, 1 hour at room temperature. Sections were washed with TBS buffer and incubated with the Rat-on-Mouse HRP - Polymer (Biocare Medical) kit. Dako EnVision System - HRP was used as a chromogen and counterstaining with Mayer’s Hematoxylin (Bio-optics) After dehydration, the coloured slides were mounted with Eukitt and images were acquired with a dotSlide Vsl20 (Olympus). Image analysis was performed using FIJI - ImageJ (Schindelin et al., 2012, 2015). ROI colour deconvolution was used to separate the DAB signal, and particle analysis was used to automatically recognise, count, and measure all CD31 -positive points within the total tumour area.
Analysis of vascularisation using a two-photon microscope
The direct optical microscope (BX51; Olympus) was used for intravitally imaging the explanted tumours. The infrared laser source (Mai Tai HP + DeepSee, Spectra Physics, USA; with 120 fs pulses at full width at half maximum and 80 MHz repetition frequency) is coupled to the head of FV300 scanning (Olympus, Japan). All measurements were acquired using a 20 x, 0.95 - NA, 2 - mm - WD lens (XLUMPlan FI; Olympus, Japan). TPE allows limited photodamage of samples, simultaneous excitation of multiple fluorescent probes and deep penetration into thick tissues such as tumours. The fluorescence signal is directed to an unscanned unit and divided into three channels (blue, green and red channel) by two dichroic beam dividers. For the analysis of the tumour implants, the entire microscope was surrounded by a custom-made thermostatic cabinet in which the temperature was maintained at 37°C (air thermostatation from “The Cube”; Life Imaging Services, Basel, CH) and the physiological conditions were guaranteed during the entire analysis by flowing a buffer solution at 37°C saturated with a mixture of 95% 02-5% C02. Volocity (Perkin-Elmer Inc.) was used to analyse recorded footage. The extracted traces were then analysed for the measurement of interaction time using a specially designed MatLab code (MathWorks Inc.).
Results
Generation of tumour lines expressing the VIVIT peptide
The authors generated stable tumour lines expressing the VIVIT peptide and tumour control lines (empty vector) to study the effects of inhibiting CN interaction with molecules containing the PxIxIT motif. We selected two types of cancer cell lines: 4T1, a breast tumour model, and B16, a melanoma model. We infected these cell lines with a lentiviral vector expressing a single transcript encoding both the VIVIT peptide and the blue fluorescent protein (BFP) bound by the self-cleaving 2A peptide sequence. After translation, the peptide 2A undergoes self-cleavage leading to expression of the two separate peptides (BFP and VIVIT). (Figure 2).
Selection of CSCs
To select CSCs, tumor cells transduced with the VIVIT peptide and control cells (tumor-BFP) were cultured for approximately two weeks, undergoing at least two 1:10 dilution steps after reaching complete confluence. At the end of the two weeks all the BFP cells continued to grow in adhesion or aggregated in random structures, while the cells expressing the VIVIT peptide grew into a sphere, a typical phenotypic condition of stem cells (Figure 3). The cells were analyzed for the expression of stem cell genes (Figure 4). B16 and 4T1 cells were also subjected to further analysis. First, an RNAseq analysis of 4T1 cells was performed. From the comparative analysis of the molecular pathways that are differentially expressed between the 4T1-VIVIT and
the 4Tl-control it is seen that the 4T1-VIVIT significantly upregulates the epithelial- mesenchymal transition pathway, demonstrating that these cells have a more stem-cell phenotype as compared to controls. Moreover, to further characterize stem cell properties of 4T1-VIVIT cells, we interrogated a web-based tool that allows to explore sternness signatures in user-defined gene sets and to investigate whether the input genes are targeted by a set of transcription factors linked to pluripotency and stem cell maintenance. As input genes we used genes which were significantly upregulated in 4T1-YIVIT as compared to 4T1 -control. Interestingly, StemChecker mainly identified in our gene set similarities with gene sets expressed by adult stem cells and embryonic stem cells (Figure 5B). The analysis of transcription factor target genes, revealed a representation of targets of the pluripotency master regulators Nanog, Sox2 and OCT4 (Figure 5C). Subsequently, 4T1-VIVIT and 4Tl-control cells were transferred in mice of the same genetic background at different concentrations and tumor growth was monitored. As can be seen from Figure 6, in both conditions used, the tumor derived from cells expressing VIVIT, show a higher growth rate in vivo as compared to tumor derived from control cells, further demonstrating a more sternness phenotype of 4T1 -VIVIT cells as compared to control cells. Furthermore, selected B16-VIVIT cells and B16-control cells were transferred in vivo into recipient mice of the same genetic background and B16-VIVIT tumors were found to be poorly vascularized compared to control tumors which had a high degree of vascularization (Figure 7).
Example 2
Materials and Methods
Generation of neurospheres from stem cells of the subventricular area of the brain
Four-month-old c57bl6 mice (ENVIGO breeding, Bresso, Italy) were euthanised by cervical dislocation. Brains were removed and placed in the PG solution (saline solution containing 30% glucose). The subventricular zone (SVZ) of the forebrain was taken by performing a 6 to 8 mm coronal cut from the olfactory bulbs and was shredded into small fragments. The tissue fragments were then digested with a solution containing papain, incubated at 45°C to 37°C under mild stirring. After centrifugation for 10 minutes at 192 x g, the tissue was resuspended in 1 ml of EBSS (Eagle’s basic salt solution free of calcium and magnesium) and mechanically dissociated with the lOOOul micropipette. After further centrifugation the cells were counted and plated at a concentration of 104 cells/cm2 in the Neurocult ™ commercial culture medium (Stem cells technologies). At each stage of the subculture, the neurospheres were mechanically dissociated to a single-cell suspension and reinserted into the specific culture medium to regenerate secondary and tertiary neurospheres for up to 60 days of culture.
Infection of SVZ neurospheres by lentiviral vector expressing VIVIT
The lentiviral vector containing the VIVIT peptide or only the BFP protein (control vector) are described in Monica Soldi et ah, “Laboratory-Scale Lentiviral Vector Production and Purification for Enhanced Ex Vivo and In Vivo Genetic Engineering”, Molecular Therapy: Methods & Clinical Development, Vol. 19, December 2020.
Neural stem cells generated from the SVZ zone of the brain of C57bl/6 mice were harvested and dissociated to single cell status, then replanted into complete culture medium (Neurocult™, Stem cells technologies). After 24 hours of dissociation, when the cells were still in the single cell phase, they were infected with 100 MOI of virus for 18 hours. After infection, the cells were left to rest for 72 hours, adding fresh culture medium each day. Subsequently, the infection was checked by assessing the expression levels of the reporter protein BFP in the flow cytometer. Analysis of adult NSC migration
Adult NSCs expressing VIVIT or only the BFP reporter protein generated as described above, were plated on transwells placed on matrigel-coated slides. After 5 days the slides were removed and stained with hematoxylin and eosin. The migrated cells on the slides were visualized and acquired using the Hamamatzu slide scanner.
In vivo expansion of NSCs
To obtain stem cell expansion directly in vivo, the lentiviral vector containing the VIVIT peptide or only the BFP protein (control vector) was injected into the subventricular area of the brain of four-month-old c57bl6 mice (ENVIGO breeding, Bresso, Italy) using stereotaxic surgery. The following stereotaxic coordinates were used: 0.6mm anteroposterior, 1.6mm mediolateral, 3-2 dorsoventral. After 30 days or 90 days from the injection, the brain was removed, frozen in OCT and cut in sections of 20um. Subsequently, immunohistochemical staining of the Nestin protein, a marker of neural stem cells, was performed.
In vivo expansion of intestinal adult stem cells
To obtain intestinal adult stem cell expansion we generated mice that express an inducible form of VIVIT selectively in the intestinal stem cells. To do this, we crossed transgenic mice that have the VIVIT insert flanked by loxP sequences and transgenic mice expressing CRE recombinase under the LGR5 gene promoter (present only in intestinal stem cells). Thus, the LGR5-CRE- VIVIT mice generated, possess the CRE DNA-recombinase under the control of the LGR5 promoter, therefore it is expressed only in intestinal stem cells in an inactivated form. CRE activation is induced by tamoxifen treatment. Once activated, the CRE protein recognizes the loxP sites that flank the VIVIT and by cutting in correspondence with these it allows VIVIT expression. Therefore, with this model, we were able to induce the selective expression of VIVIT
in intestinal stem cells after treatment with tamoxifen. LGR5-CRE-VIVIT mice were treated or not (control) for three weeks every 7 days with 1.2 mg of tamoxifen administered by oral gavage. Mice were then euthanized by cervical dislocation, the colon was extracted and frozen in OCT. Histological sections of 5um were performed and visualized with confocal microscopy. In these animals, the GFP reporter is expressed in LGR5 positive cells, while the expression of the TdTomato reporter is generated only when VIVIT is expressed.
Results
Generation of neural primary stem cells expressing VIVIT peptide
We generated neural stem cells expressing the VIVIT peptide or only the BFP reporter protein (empty control vector) to investigate the effects of inhibiting CN interaction with molecules containing the PxIxIT motif. We first derived neural stem cells from the subventricular zone of the brain of adult wild-type mice with background C57bl/6. After being cultivated in culture medium conditioned with EGF and FGF2 for 15 days and after performing two dissociations, the neurospheres were dissociated and infected with the VIVIT-expressing lentivirus (Figure 2) or with the empty lentivirus at MOI of 100. We subsequently evaluated the percentage of infected cells, analysing the expression of the BFP reporter protein in a flow cytometer (Figure 8). Analysis of neurosphere formation from SVZ neural stems
We evaluated the formation of neurospheres in SVZ-VIVIT and SVZ-BFP cultures. We observed how SVZ-VIVIT cultures formed neurospheres early after dissociation and in greater amounts than the SVZ-BFP control culture (Figure 9). Furthermore, the observation of neurospheres in culture at late times allowed us to assess how
SVZ-VIVIT neurospheres remained much more viable and were always numerically superior to SVZ-BFP cultures (Figure 9). The SVZ-VIVIT and BFP neurospheres were maintained in culture medium containing EGF and FGF2 until their natural senescence was reached, which is observed in vitro between 60 and 90 days. During this culture phase, cells were dissociated, counted, and replated every 8 days, and a growth curve was generated to evaluate a possible effect of VIVIT on neurosphere expansion (Figure 10A). This monitoring showed that chronic expression of the VIVIT peptide in SVZ stem cells keeps the neurospheres in their stem state and prevents their natural senescence. The final effect is therefore to enrich adult neural stem cultures strongly (Figure 10A). The migratory capacity of the NSCs- VIVIT compared to the NSCs-BFP was also assessed. The cells were plated in a transwell and after 5 days their ability to migrate to the slide placed under the transwell was evaluated. As shown in Figure 10B, VIVIT- expressing cells exhibit greater migratory capacity. This result shows that the expression of VIVIT induces the expansion of non-quiescent-activated adult stem cells, characterized by a
greater migratory capacity. To obtain stem cell expansion directly in vivo , the lentiviral vector containing the VIVIT peptide or only the BFP protein (control vector) was injected into the subventricular area of the brain of four-month-old c57bl6 mice. After 30 days and 90 days from the injection, we evaluated by immunohistochemistry the presence of cells expressing Nestin protein, a marker of NSCs. As shown in Figure 11 A, the animals that received VIVIT show an increase in the number of Nestin positive cells both 30 and 90 days after the injection of the lentivirus. Furthermore, it can be appreciated how Nestin positive cells are mainly located in the corpus callosum, indicating a propensity of these cells to migrate along the brain. The same result is underlined by the fact that Nestin positive cells are more represented in the mice treated with VIVIT even in sections not proximal to the site of injection (Figure 11A, right panel). These results are in line with the observation of the increased migration of NSCs expressing VIVIT obtained in vitro. Finally, we also evaluated whether the selective expression of VIVIT in intestinal stem cells induced its expansion in vivo. As shown in Figure 1 IB, even in the intestine, animals expressing VIVIT in intestinal stem cells show an increase in the number of LGR5 positive cells.
Claims
1. A method for expanding activated adult stem cells or tumor stem cells and/or for maintaining an activated adult stem cell or tumor stem cell culture in vitro in a stem state and/or preventing its senescence and/or differentiation and/or for enriching a cell culture with activated adult stem cells or tumor cells, the method comprising providing, preferably stably providing, a target stem cell or target stem cell culture with a molecule capable of chronically inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif, where said target stem cell is an adult stem cell or tumor stem cells.
2. The method according to claim 1 wherein the provision of said molecule to said target stem cell or target stem cell culture allows to obtain activated adult stem cells or tumor stem cells or cultures thereof.
3. The method of claim 1 or 2 wherein the activated adult stem cells or tumor stem cells are cells in active proliferation and/or with migratory capacity.
4. The method according to any one of previous claims, wherein said target cells are adult stem cells of various tissues, preferably neural stem cells, intestinal stem cells, tumor stem cells, preferably of human or mouse origin, more preferably said neural stem cells are obtained from the olfactory bulb.
5. The method according to any one of previous claim, wherein said molecule is a competitor for the binding site of the CN with the nuclear factor of activated T-cells (NFAT).
6. The method according to any one of the previous claims wherein said molecule is stably expressed by the target stem cell or target stem cell culture.
7. The method according to one of the preceding claims, wherein said molecule is a peptide comprising or consisting of the sequence SEQ ID NO:l (VIVIT), SEQ ID NO: 2 (CGGGKMAGPVIVITGPHEE), SEQ ID NO: 3 (CGGVIVIT), SEQ ID NO:4 (CGGGKMAGPHPVIVITGPHEE) or SEQ ID NO: 5 (CGGGMAGPVIVITGPHEE).
8. The method according to claim 7 wherein the molecule further comprises an amino acid sequence which allows passage through the cell membrane of an eukaryotic cell, preferably said sequence selected from the following group poly-arginine, Arg 11 (RRRRRRRRRRR/SEQ ID NO: 6) ;
Tat / RKKRRQRRR/SEQ ID NO: 7;
Penetratine / RQIKIWF QNRRMKWKK/SEQ BD NO: 8;
Buforin II / TRS SRAGLQFP V GRVHRLLRK/ SEQ ID NO: 9; Transportan / GWTLNS AGYLLGKTNLKAL AALAKKIL/SEQ ID NO: 10;
MAP (model amphipathic peptide) / KLALKLALKALKAALKLA/SEQ ID NO: 11; K-FGF / AAVALLP AVLLALLAP/SEQ ID NO: 12;
Ku70 / VPMLK/SEQ ID NO: 13
Ku70 / PMLKE/SEQ ID NO: 14; Prion /
MANLGYWLLALFVTMWTDVGLCKKRPKP/SEQ ID NO: 15; pVEC / LLIILRRRIRKQAHAHSK/SEQ ID NO: 16;
Pep-1 / KETWWETWWTEWSQPKKKRKV/SEQ ID NO: 17;
SynBl / RGGRLSYSRRRFSTSTGR/SEQ ID NO: 18;
Pep-7 / SDLWEMMM V SL ACQ Y/SEQ ID NO: 19; and HN-I / T SPLNIHN GQKL/SEQ ID NO: 20.
9. The method according to one of the preceding claims, wherein the provision of the molecule to the target cell comprises:
- the delivery of an expression cassette of the molecule to said target cell where said cassette is preferably comprised in a replicable vector, preferably a viral vector, preferably an adeno-associated virus (AAV), an unintegrated lentivirus, an adenoviral or retroviral vector, or a non-viral vector and / or
- the delivery of nucleic acid encoding the molecule, including mRNA, preferably linked to a nanoparticle, such as a nanovector.
10. The method according to any one of the preceding claims comprising the steps of: i. culturing neural stem cells in vitro in an appropriate culture medium comprising growth factors, e.g. EGF and / or FGF2, for 5-20 days, preferably 15 days,
ii. perform at least one dissociation of the cultured cells and obtain neurospheres, iii. provide the neurospheres with a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif as defined in any one claims 3-5, iv. culture the neurospheres in a culture medium comprising growth factors, for example EGF and / or FGF2, until their natural senescence is reached, preferably for 60-90 days, and optionally v. isolate stem cell colonies from the culture resulting from the step iv.
11. The method according to any one of claims 1-9 comprising the steps of: i. Cultivate in vitro tumor cells, preferably a tumor line, in an appropriate culture medium comprising growth factors, for example EGF and / or FGF2, ii. Perform at least 3 culture passages, iii. provide the cells with a molecule capable of inhibiting the interaction of calcineurin (CN) with a substrate containing the PxIxIT motif as defined in any one of claims 3-5, iv. Perform at least 3 culture passages, v. Bringing culture to a state of complete confluence each time and monitoring the formation of spheres, e.g.7-10 days and optionally vi. isolate stem cell colonies from the culture resulting from the step v.
12. The method according to claim 10 or 11, wherein step iii. comprises delivery with a vector expressing the molecule as defined in any one of claims 1-8 and / or comprising a nucleic acid encoding said molecule.
13. The method according to claim 12 wherein the vector is a viral vector, preferably a lenti virus.
14. The method according to claim 13, wherein said molecule is a peptide comprising or consisting of the sequence SEQ ID NO:l VIVIT.
15. Cell obtainable from the method according to any one of the preceding claims.
16. Cell population comprising at least one cell according to claim 15.
17. Cell according to claim 15 or population according to claim 16 for medical use, preferably for use in cell or tissue regeneration.
18. Use of the cell according to claim 15 or population according to claim 16 for in vitro experimentation.
19. A molecule able to chronically inhibit the interaction of calcineurin (CN) with a substrate containing the PxIxIT motifs as defined in any one of claims 1-8 for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
20. The molecule for use according to claim 19 wherein the activated adult stem cells are cells in active proliferation and/or with migratory capacity.
21. The molecule for use according to claim 19 or 20 wherein the activated adult stem cells are obtained by providing, preferably stably providing, said molecule to adult stem cells and/or wherein the activated adult stem cells express, preferably stably, said molecule.
22. Nucleic acid encoding the molecule as defined in any one of claims 1-8 for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
23. Vector expressing the molecule as defined in any one of claims 1-8 or comprising the nucleic acid according to claim 22 or nanoparticle, such as a nanovector, comprising the molecule as defined in any one of claims 1-8 or comprising the nucleic acid according to claim 22 for use in the expansion of activated adult stem cells and / or in the inhibition of differentiation and / or of senescence of activated adult stem cells.
24. Use of the molecule as defined in one of claims 1-8, of the nucleic acid according to claim 22 or of the vector according to claim 23 or the nanovector according to claim 23 to stably inhibit the bond between the CN and one or more of its specific ligands.
25. A cell comprising and / or expressing the molecule as defined in any one of claims 1- 8 or the nucleic acid of claim 22 or the vector of claim 23 and / or engineered to comprise and / or express said molecule or said nucleic acid or said vector.
26. The cell of claim 25 wherein the cell stably express said molecule.
27. Cell population comprising at least one cell according to claim 26.
28. Cell according to claim 25 or 26 or population according to claim 27 for medical use, preferably in cell or tissue regeneration.
29. Use of the cell according to claim 25 or 26 or population according to claim 27 for in vitro experimentation.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP22738409.6A EP4359513A1 (en) | 2021-06-23 | 2022-06-23 | A molecule capable of inhibiting the integration of calcineurin with a substrate and uses thereof |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
IT202100016535 | 2021-06-23 | ||
IT102021000016538 | 2021-06-23 | ||
IT102021000016538A IT202100016538A1 (en) | 2021-06-23 | 2021-06-23 | CULTURE METHOD, CELLS OBTAINABLE FROM THE METHOD AND RELATED USES |
IT102021000016535 | 2021-06-23 |
Publications (1)
Publication Number | Publication Date |
---|---|
WO2022269007A1 true WO2022269007A1 (en) | 2022-12-29 |
Family
ID=82446664
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/EP2022/067275 WO2022269007A1 (en) | 2021-06-23 | 2022-06-23 | A molecule capable of inhibiting the integration of calcineurin with a substrate and uses thereof |
Country Status (2)
Country | Link |
---|---|
EP (1) | EP4359513A1 (en) |
WO (1) | WO2022269007A1 (en) |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2003072604A1 (en) * | 2002-02-28 | 2003-09-04 | Japan Science And Technology Agency | Transmembrane nfat inhibitory peptide |
WO2016033368A1 (en) * | 2014-08-27 | 2016-03-03 | Ohio State Innovation Foundation | Improved peptidyl calcineurin inhibitors |
US20170114322A1 (en) * | 2014-03-26 | 2017-04-27 | Kyoto University | Culture medium for pluripotent stem cells |
WO2020080561A1 (en) * | 2018-10-15 | 2020-04-23 | (주)메디톡스 | Pluripotent stem cell culture medium and culture method using same |
-
2022
- 2022-06-23 EP EP22738409.6A patent/EP4359513A1/en active Pending
- 2022-06-23 WO PCT/EP2022/067275 patent/WO2022269007A1/en active Application Filing
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2003072604A1 (en) * | 2002-02-28 | 2003-09-04 | Japan Science And Technology Agency | Transmembrane nfat inhibitory peptide |
US20170114322A1 (en) * | 2014-03-26 | 2017-04-27 | Kyoto University | Culture medium for pluripotent stem cells |
WO2016033368A1 (en) * | 2014-08-27 | 2016-03-03 | Ohio State Innovation Foundation | Improved peptidyl calcineurin inhibitors |
WO2020080561A1 (en) * | 2018-10-15 | 2020-04-23 | (주)메디톡스 | Pluripotent stem cell culture medium and culture method using same |
Non-Patent Citations (9)
Title |
---|
FÖLDES GÁBOR ET AL: "Immunosuppressive Agents Modulate Function, Growth, and Survival of Cardiomyocytes and Endothelial Cells Derived from Human Embryonic Stem Cells", STEM CELLS AND DEVELOPMENT, vol. 23, no. 5, 1 March 2014 (2014-03-01), US, pages 467 - 476, XP055896081, ISSN: 1547-3287, DOI: 10.1089/scd.2013.0229 * |
LALIDA ROJANATHAMMANEE ET AL: "Attenuation of microglial activation in a mouse model of Alzheimer?s disease via NFAT inhibition", JOURNAL OF NEUROINFLAMMATION, BIOMED CENTRAL LTD., LONDON, GB, vol. 12, no. 1, 4 March 2015 (2015-03-04), pages 42, XP021214282, ISSN: 1742-2094, DOI: 10.1186/S12974-015-0255-2 * |
LI XIANG ET AL: "Calcineurin-NFAT Signaling Critically Regulates Early Lineage Specification in Mouse Embryonic Stem Cells and Embryos", CELL STEM CELL, vol. 8, no. 1, 7 January 2011 (2011-01-07), AMSTERDAM, NL, pages 46 - 58, XP055788092, ISSN: 1934-5909, DOI: 10.1016/j.stem.2010.11.027 * |
LI XIANG ET AL: "Supplemental Information Calcineurin-NFAT Signaling Critically Regulates Early Lineage Specification in Mouse Embryonic Stem Cells and Embryos", CELL STEM CELL, vol. 8, 7 January 2007 (2007-01-07), AMSTERDAM, NL, pages 1 - 19, XP055896611, ISSN: 1934-5909, Retrieved from the Internet <URL:https://ars.els-cdn.com/content/image/1-s2.0-S1934590910006491-mmc1.pdf> DOI: 10.1016/j.stem.2010.11.027 * |
MONICA SOLDI ET AL.: "Laboratory-Scale Lentiviral Vector Production and Purification for Enhanced Ex Vivo and In Vivo Genetic Engineering", MOLECULAR THERAPY: METHODS & CLINICAL DEVELOPMENT, 19 December 2020 (2020-12-19) |
MONICA SOLDI ET AL.: "Laboratory-Scale Lentiviral Vector Production and Purification for Enhanced Ex Vivo and In Vivo Genetic Engineering", MOLECULAR THERAPY: METHODS & CLINICAL DEVELOPMENT, vol. 19, December 2020 (2020-12-01) |
SERRANO-PÉREZ MARÍA C. ET AL: "NFAT transcription factors regulate survival, proliferation, migration, and differentiation of neural precursor cells : NFAT Effects on Neural Precursor Cells", GLIA, vol. 63, no. 6, 2 March 2015 (2015-03-02), US, pages 987 - 1004, XP055896076, ISSN: 0894-1491, DOI: 10.1002/glia.22797 * |
XIANG LI ET AL.: "Calcineurin-NFAT signalling critically regulates early lineage specification in mouse embryonic stem cells and embryos", CELL STEM CELL, vol. 8, January 2011 (2011-01-01), pages 46 - 58 |
XIANG LILILI ZHUACONG YANGJIANGWEI LINFAN TANGSHIBO JINZHE WEIJINSONG LIYING JIN: "Calcineurin-NFAT Signaling Critically Regulates Early Lineage Specification in Mouse Embryonic Stem Cells and Embryos", CELL STEM CELL, vol. 8, 7 January 2011 (2011-01-07), pages 46 - 58, XP055788092, DOI: 10.1016/j.stem.2010.11.027 |
Also Published As
Publication number | Publication date |
---|---|
EP4359513A1 (en) | 2024-05-01 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US20220145253A1 (en) | Conditionally immortalized long-term stem cells and methods of making and using such cells | |
CN103124784A (en) | Method for expansion of stem cells and the use of such cells | |
JP6861438B2 (en) | Modified endothelial cells expressing ETS transcription factor | |
CN110121555B (en) | Blood brain barrier comprising engineered endothelial cells | |
US12098193B2 (en) | Netrin G1 as a biomarker for enhancing tumor treatment efficacy | |
WO2022269007A1 (en) | A molecule capable of inhibiting the integration of calcineurin with a substrate and uses thereof | |
Rodrigues et al. | Bidirectional activation of stem-like programs between metastatic cancer and alveolar type 2 cells within the niche | |
JP6749595B2 (en) | Method for inducing lacrimal gland epithelial cells from ES cells and other stem cells | |
EP2329024A1 (en) | An endogenous short hairpin rna and the use of the same | |
IT202100016538A1 (en) | CULTURE METHOD, CELLS OBTAINABLE FROM THE METHOD AND RELATED USES | |
AU2014202016B2 (en) | Conditionally immortalized long-term stem cells and methods of making and using such cells | |
WO2024192351A2 (en) | Transient modified-rna based elevated expression of fli-1 to augment hematopoietic stem and progenitor cell expansion | |
ES2357627T3 (en) | ADULT MOTHER CELLS IMMORTALIZED IN A LONG-TERM CONDITIONAL FORM AND METHODS TO MAKE AND USE SUCH CELLS. | |
CN101308143A (en) | Novel function of c-Jun participating in classical Wnt signal transduction path |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
121 | Ep: the epo has been informed by wipo that ep was designated in this application |
Ref document number: 22738409 Country of ref document: EP Kind code of ref document: A1 |
|
WWE | Wipo information: entry into national phase |
Ref document number: 2022738409 Country of ref document: EP |
|
NENP | Non-entry into the national phase |
Ref country code: DE |
|
ENP | Entry into the national phase |
Ref document number: 2022738409 Country of ref document: EP Effective date: 20240123 |