WO2022151532A1 - Application of tegaserod maleate in treatment of acute myelocytic leukemia and colorectal cancer - Google Patents
Application of tegaserod maleate in treatment of acute myelocytic leukemia and colorectal cancer Download PDFInfo
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- WO2022151532A1 WO2022151532A1 PCT/CN2021/074340 CN2021074340W WO2022151532A1 WO 2022151532 A1 WO2022151532 A1 WO 2022151532A1 CN 2021074340 W CN2021074340 W CN 2021074340W WO 2022151532 A1 WO2022151532 A1 WO 2022151532A1
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- tumor
- tegaserod maleate
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- ythdf1
- leukemia
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- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/40—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
- A61K31/403—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with carbocyclic rings, e.g. carbazole
- A61K31/404—Indoles, e.g. pindolol
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- A—HUMAN NECESSITIES
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- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
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- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
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- G—PHYSICS
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- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
- G01N33/57407—Specifically defined cancers
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- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
- G01N33/57407—Specifically defined cancers
- G01N33/57426—Specifically defined cancers leukemia
Definitions
- the invention belongs to the field of molecular biology, in particular to the field of tumor treatment, and relates to a therapeutic drug obtained by screening acute myeloid leukemia and colorectal cancer specific and highly expressed markers.
- the present invention uses the N6-methyladenosine (m6A) recognition protein YTHDF1 for the first time to screen drugs for treating acute myeloid leukemia and colorectal cancer.
- the drug is Tegaserod maleate ).
- Leukemia is a malignant clonal disease of the hematopoietic system. According to the degree of differentiation and maturation of leukemia cells and the natural process, leukemia is divided into two categories: acute and chronic. Secondly, according to the main involved cell series, it can be divided into acute myeloid leukemia (AML), acute lymphoblastic leukemia (ALL), chronic myeloid leukemia (CML) and chronic lymphocytic leukemia (CLL) and rare types of leukemia, such as : Hairy cell leukemia, prolymphocytic leukemia, etc. The incidence rate in my country is (3-4)/100,000.
- leukemia In malignant tumor mortality, leukemia ranks 6th (male) and 7th (female), and in children and adults under 35 years old, it ranks 1st.
- the incidence of leukemia in my country is similar to that of Asian countries, but lower than that of European and American countries.
- the incidence rate in urban is higher than that in rural areas, AML is more common in adults, the incidence in men is higher than that in women (1.81:1), and ALL is more common in children.
- AML is cured in 35 to 40 percent of adult patients under the age of 60 and in 5 to 15 percent of patients over the age of 60. Most patients with AML will experience disease relapse within 3 years of diagnosis.
- Colorectal cancer is a gastrointestinal malignancy that seriously threatens human health, and its morbidity and mortality are in the forefront. Among them, the morbidity and mortality of CRC in the United States are ranked third in malignant tumors, while the incidence and mortality of CRC in my country are the fifth. Early-stage CRC can be surgically removed, and the treatment effect is good. The 5-year survival rate of patients can reach more than 90%. However, there is currently no effective treatment for metastatic CRC, and the 5-year survival rate of patients is only about 10%. The occurrence and development process of colorectal cancer in the body is very complicated, and comprehensive treatment is mostly used in clinical practice.
- mRNA methylation in the regulation of gene expression.
- an abundant and conserved mRNA modification is methylation of adenosine at the N-6 position, N6-methyladenosine (m6A).
- m6A is the most abundant methylation modification of mRNAs in eukaryotic cells. It affects every process of the RNA life cycle, such as mRNA stability, splicing, and precursor miRNA processing. It is also involved in tissue development, stem cell repair and differentiation. , DNA damage response, biological rhythm regulation and innate immune regulation and other biological processes.
- m6A recognition proteins YTHDF1/2 and eIF3, etc.
- FTO and ALKBH5 methyltransferase complexes
- YTHDF1/2 and eIF3, etc. m6A recognition proteins
- YTH domain family proteins are major mA-binding proteins that regulate various RNA metabolisms, including mRNA splicing, degradation, and translation.
- YTHDF1 also known as YTH domain-containing family protein 1 or C20orf21, is a 559 amino acid protein that is localized in the cytoplasm.
- M6A mRNA methylation is emerging as a pathway that affects cancer initiation and progression in a variety of tumors. So far, many studies have confirmed the functional importance of m6A modifications in leukemia, such as METTL3, METTL14, FTO and YTHDF2.
- YTHDF1 protein in the development of AML and CRC remains to be explored. Screening drugs targeting YTHDF1 protein will provide a new entry point for the treatment of AML and CRC.
- Tegaserod maleate trade name Zemaco, Changronin, is a chemical. Chemical name (R)-3-(5-methoxy-1H-indole-3-methylene)-N-pentyl-iminoguanidine maleate, molecular formula is C 20 H 27 N 5 O 5 , the molecular weight is 417.46. Tegaserod maleate is a selective, partial agonist of 5-HT 4 receptors, which is mainly used for short-term treatment of symptom relief in female patients with constipation-predominant irritable bowel syndrome.
- tegaserod maleate is a partial agonist of indole-type selective 5-HT 4 receptors, which stimulates the gastrointestinal tract by stimulating 5 -HT4 receptors stimulate gastrointestinal peristaltic reflex and intestinal secretion, and inhibit visceral sensitivity.
- tegaserod maleate can target m6A recognition protein YTHDF1 to treat acute myeloid leukemia and colorectal cancer, and achieve the effect of delaying the progression of acute myeloid leukemia and colorectal cancer and improving the survival of patients in the prior art. Not mentioned, and there is no animal experiment to prove its therapeutic effect.
- One aspect of the present invention is to provide the application of tegaserod maleate in preparing a preparation that blocks the binding of YTHDF1 to RNA containing m6A modification, thereby regulating the expression of downstream key target genes; in a specific embodiment, the wherein the key gene is CCNE2; in another specific embodiment, the regulation is inhibiting expression.
- Another aspect of the present invention is to provide the use of tegaserod maleate or a pharmaceutically acceptable salt thereof in the preparation of a medicament for treating tumors, characterized in that the tegaserod maleate blocks YTHDF1 by blocking the Binding with m6A-modified RNA to regulate the translation of downstream key target genes to achieve the effect of treating tumors.
- the tumor includes but is not limited to: the tumor in this application is selected from adenocortical carcinoma, anal carcinoma, anorectal carcinoma, anal canal carcinoma, appendix carcinoma, cerebellar astrocytoma , brain astrocytoma, basal cell carcinoma, skin cancer (non-melanoma), biliary tract cancer, extrahepatic cholangiocarcinoma, intrahepatic cholangiocarcinoma, bladder cancer, bone and joint cancer, osteosarcoma, malignant fibrous histiocytoma, brain cancer , brain tumor, brain stem glioma, ependymoma, medulloblastoma, visual pathway and hypothalamic glioma, breast cancer, bronchial adenoma, nervous system cancer, nervous system lymphoma, central nervous system Cancer, Central Nervous System Lymphoma, Cervical Cancer, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Chronic
- the tumor is a hematological tumor, preferably leukemia, more preferably acute myeloid leukemia.
- the tumor is a solid tumor, preferably colorectal cancer.
- the pharmaceutically acceptable salt is selected from mesylate, maleate, tartrate, succinate, acetate, difluoroacetate, fumaric acid Salts, citrates, citrates, benzenesulfonates, benzoates, naphthalenesulfonates, lactates, malates, hydrochlorides, hydrobromides, sulfates, and phosphates.
- the medicament further includes a pharmaceutically acceptable carrier
- the "pharmaceutically acceptable carrier” includes any and all solvents that are physiologically compatible, Dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like.
- the carrier is suitable for intravenous, intramuscular, subcutaneous, parenteral, intraperitoneal, spinal or epidermal administration (eg, by injection or infusion), and the pharmaceutical compositions of the present application may include one or more Pharmaceutically acceptable salts, antioxidants, aqueous and non-aqueous carriers, and/or adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents.
- the mode of administration of the drug includes, but is not limited to, intravenous, intramuscular, subcutaneous, parenteral, intraperitoneal, spinal or epidermal administration of the drug.
- the medicament further comprises a buffer, a stabilizer, and optionally a surfactant.
- the buffer can be selected from one or more of acetate, citrate, succinate, and phosphate.
- Stabilizers may be selected from sugars or amino acids, preferably disaccharides such as sucrose, lactose, trehalose, maltose.
- Surfactant is selected from polyoxyethylene hydrogenated castor oil, glycerin fatty acid ester, polyoxyethylene sorbitan fatty acid ester, preferably described polyoxyethylene sorbitan fatty acid ester is polysorbate 20,
- the dosage of the drug is 1-20 mg/kg, preferably 2-15 mg/kg, more preferably 3-10 mg/kg, most preferably 5 mg/kg.
- Another aspect of the present invention is to provide the use of tegaserod maleate in the preparation of a preparation for blocking the binding reaction of the YTH domain with m6A-modified RNA, wherein the use is for non-therapeutic purposes.
- Another aspect of the present invention is the use of YTHDF1 as a target for screening tumor drugs.
- the tumor is a hematological tumor, preferably leukemia, more preferably acute myeloid leukemia.
- the tumor is a solid tumor, preferably a gastrointestinal tumor, more preferably a colorectal cancer.
- the beneficial effects of the present invention include 1) using a marker protein of acute myeloid leukemia and colorectal cancer (YTHDF1) as a target for screening drugs for treating acute myeloid leukemia and colorectal cancer, specifically, using biological information Bioinformatics technology, which simulates the high-level structure of the marker protein, and screens the drugs that can specifically bind to it from the marketed therapeutic drugs; further, the bioinformatics technology refers to virtual screening technology; further, the said bioinformatics technology refers to the virtual screening technology; Drugs are chemical drugs.
- YTHDF1 marker protein of acute myeloid leukemia and colorectal cancer
- the present invention finds for the first time that the drug tegaserod maleate for female constipation-type irritable bowel syndrome patients can be applied to the treatment of tumors, especially acute myeloid leukemia;
- tegaserod maleate is achieved by inhibiting the function of m6A recognition protein YTHDF1 in cells, thereby inhibiting cell proliferation, arresting cell cycle in G1 phase, and promoting cell apoptosis. tumor inhibition.
- FIG. 1 Tegaserod maleate is cytotoxic to acute myeloid leukemia THP-1 cells in a dose-dependent manner, with an IC50 value of 3.58 ⁇ M (Figure 1a), inhibiting cell proliferation (Figure 1b) and promoting cell apoptosis apoptosis (Fig. 1e), arresting the cell cycle in G1 phase (Fig. 1f).
- tegaserod maleate was also cytotoxic to human colorectal cancer cells HCT116 in a dose-dependent manner, with an IC50 value of 2.349 ⁇ M (Fig. 1c), and inhibited cell proliferation (Fig. 1d).
- Tegaserod maleate blocked the binding of m6A recognition protein YTHDF1 to m6A-modified RNAs with a K D value of 0.7993 ⁇ M (Fig. 2a). Tegaserod maleate was administered to THP-1 cells, and the expressions of YTHDF1 and CCNE2 were detected respectively. Taking DMSO as a control, administration of tegaserod maleate did not change the protein level of YTHDF1, while the protein expression level of CCNE2 was down-regulated ( Figure 2b).
- Fig. 3 In a mouse model of AML established by xenografting human THP-1 cells using severely immunodeficient NCG mice, administration of tegaserod maleate can prolong the survival time of mice and hinder the progression of leukemia.
- Acute myeloid leukemia cell line THP-1 and human colorectal cancer cell line HCT116 were provided by Stem Cell Bank of Chinese Academy of Sciences; RPMI1640 and DMEM were purchased from Gibco Company; fetal bovine serum was purchased from Hyclone Company.
- Cell CountingKit-8 reagent was purchased from DOJINDO Company, hCD45-FITC antibody, hCD117-PE-Cy7 antibody, apoptosis kit and cell cycle reagent were purchased from eBioscience Company.
- YTHDF1 and CCNE2 antibodies were purchased from Proteintech and CST, respectively. The primers were synthesized by Hangzhou Youkang Biological Company.
- Tegaserod maleate was purchased from MCE Company (HY-14153A); other drugs were of domestic analytical grade.
- Wright-Giemsa staining solution was purchased from BASO Company; Severe immunodeficiency NCG mice were purchased from Jiangsu JiCui Yaokang Biological Company.
- Acute myeloid leukemia cell lines were grown in suspension in RPMI 1640 medium containing 10% fetal bovine serum, and human colorectal cancer cell lines were adherently grown in DMEM medium containing 10% fetal bovine serum at 37°C, 5% Cultured in a CO2 humidified incubator and passaged every other day.
- Collect cells take 1 ⁇ 10 6 cells/tube, wash twice with PBS, and centrifuge for 5 minutes at 1000 rpm each time.
- Proteins were separated by SDS-PAGE, transferred to membrane, blocked, incubated with primary antibody overnight, and incubated with horseradish peroxidase (HRP)-labeled secondary antibody at room temperature for 1 hour. Substrate ECL was added to develop color, and the results were obtained by scanning with a chemiluminescence imager.
- HRP horseradish peroxidase
- Bone marrow cells were stained with Wright-Giemsa staining kit from BASO.
- mice The femurs of mice were isolated, bone marrow cells were collected, anti-human CD45 and CD177 antibodies were added, and the cells were incubated for 30 minutes. The red blood cells were lysed, washed twice with PBS, and the tumor load of the mice was detected by flow cytometry.
- mice 1 ⁇ 10 6 cells were collected and resuspended in 200 ⁇ l of PBS, and injected into 8-10-week-old male severely immunodeficient NCG mice through the tail vein aseptically. After the successful engraftment of leukemia cells was confirmed by flow cytometry, the drug was administered every other day. And weigh the weight of the mice to observe the life status of the mice.
- binding affinity of m6A- and non-m6A-containing RNAs to YTHDF1 protein was assessed by SPR experiments using a Biacore T200 instrument (GE Healthcare). Serial concentrations of YTHDF1 protein were injected into the flow system and analyzed separately. Next, a series of concentrations of compounds were injected into the flow system and analyzed for 90 s, with dissociation for 120 s. The association time was set to 120s, while the dissociation time was set to 360s. After dissociation, the chip surface was regenerated by 50 mM NaOH and 1 M NaCl. Before analysis, two reference subtractions were performed to remove changes in bulk refractive index, injected noise and data drift. Binding affinity was determined by ensemble fitting to the Langmuir 1:1 binding model in Biacore evaluation software (GE Healthcare).
- the crystal structure PDB ID: 4RCJ of hYTHDF1 was obtained from the PDB database (http://www.rcsb.org).
- the m6A binding region of hYTHDF1 protein was determined as the docking pocket for virtual screening, and the software used for virtual screening was Maestro 11.4.
- Protein Preparation Wizard Panel module to process the protein: dewatering, hydrogenation, structure optimization, deletion of redundant chains, energy minimization, etc., using the m6A binding region of hYTHDF1 protein as a docking pocket, and using the Receptor Grid Generation module to make grid files, boxes size is Then, prepare the compounds: The 2D format of the FDA-Approved Drug Library (containing 1805 compounds) is processed through the LigPrep Module module to output the 3D structure. Finally, virtual screening: Virtual Screening Workflow module is used for virtual screening, the prepared compounds are imported, and the Glide module is used for molecular docking, that is, the receptor and ligand molecules are docked with each other through geometric matching and energy matching.
- YTHDF1 acute myeloid leukemia
- Embodiment 2 Cytological experiment of tegaserod maleate
- Example 3 The ability of tegaserod maleate to block the binding of YTHDF1 protein to RNA containing m6A modification
- Example 2 Based on the results of virtual screening in Example 1 and the relationship between m6A recognition protein and acute myeloid leukemia and colorectal cancer known to those skilled in the art, we predicted that tegaserod maleate would be associated with acute myeloid leukemia and colorectal cancer.
- the m6A recognition protein of YTHDF1 is related to YTHDF1, so we speculate that when tegaserod maleate is administered to cells, the function and key target genes of YTHDF1 can be inhibited. It can block the binding of m6A recognition protein YTHDF1 to m6A-modified RNA, and the results are shown in Figure 2a.
- mice In order to further verify the effect of tegaserod maleate in the treatment of acute myeloid leukemia, we conducted a mouse experiment, that is, in the xenotransplantation of human AML cells to construct an AML mouse model, 5mg/kg of tegaseroate maleate significantly prolong the survival time of mice.
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Abstract
The present invention relates to the field of molecular biology, and in particular to tumor treatment. Specifically, tegaserod maleate obtained by screening from drugs disclosed in the prior art has an effect of treating acute myelocytic leukemia and colorectal cancer; cytological experiments and animal experiments prove that tegaserod maleate can inhibit the proliferation of acute myelocytic leukemia cell lines and human colorectal cancer cell lines, induce apoptosis and block a cell cycle in a G1 phase; in a mouse model, the survival time of a mouse can be significantly prolonged and the progression of leukemia can be blocked; moreover, it is also found for the first time that by inhibiting the function of m6A recognition protein YTHDF1 in a tumor cell, i.e., blocking the binding of YTHDF1 to an RNA containing an m6A modification, tegaserod maleate can inhibit a translation capability of a downstream key target gene to achieve the described effect.
Description
本发明属于分子生物学领域,具体为肿瘤治疗领域,涉及一种根据急性髓系白血病和结直肠癌特异性高表达的标志物筛选获得的治疗药物。具体的,本发明首次利用N6-甲基腺苷(m6A)识别蛋白YTHDF1筛选治疗急性髓系白血病和结直肠癌的药物,具体的,所述的药物为马来酸替加色罗(Tegaserod maleate)。The invention belongs to the field of molecular biology, in particular to the field of tumor treatment, and relates to a therapeutic drug obtained by screening acute myeloid leukemia and colorectal cancer specific and highly expressed markers. Specifically, the present invention uses the N6-methyladenosine (m6A) recognition protein YTHDF1 for the first time to screen drugs for treating acute myeloid leukemia and colorectal cancer. Specifically, the drug is Tegaserod maleate ).
白血病是造血系统的恶性克隆性疾病,根据白血病细胞的分化成熟程度和自然进程,将白血病分为急性和慢性两大类。其次,根据主要受累的细胞系列,可分为急性髓系白血病(AML)、急性淋巴细胞白血病(ALL)、慢性髓系白血病(CML)和慢性淋巴细胞白血病(CLL)及少见类型的白血病,如:毛细胞白血病、幼淋巴细胞白血病等。我国发病率为(3~4)/10万。在恶性肿瘤死亡率中,白血病居第6位(男性)和第7位(女性),在儿童及35岁以下成人中,则居第l位。我国白血病发病率与亚洲国家相近,低于欧美国家。城市的发病率高于农村,成人中以AML多见,男性发病率高于女性(1.81:1),儿童中则以ALL较多见。目前,AML在60岁以下的成年患者中治愈35%至40%,在60岁以上的患者中治愈5%至15%。大多数AML患者在诊断后3年内会发生疾病复发。Leukemia is a malignant clonal disease of the hematopoietic system. According to the degree of differentiation and maturation of leukemia cells and the natural process, leukemia is divided into two categories: acute and chronic. Secondly, according to the main involved cell series, it can be divided into acute myeloid leukemia (AML), acute lymphoblastic leukemia (ALL), chronic myeloid leukemia (CML) and chronic lymphocytic leukemia (CLL) and rare types of leukemia, such as : Hairy cell leukemia, prolymphocytic leukemia, etc. The incidence rate in my country is (3-4)/100,000. In malignant tumor mortality, leukemia ranks 6th (male) and 7th (female), and in children and adults under 35 years old, it ranks 1st. The incidence of leukemia in my country is similar to that of Asian countries, but lower than that of European and American countries. The incidence rate in urban is higher than that in rural areas, AML is more common in adults, the incidence in men is higher than that in women (1.81:1), and ALL is more common in children. Currently, AML is cured in 35 to 40 percent of adult patients under the age of 60 and in 5 to 15 percent of patients over the age of 60. Most patients with AML will experience disease relapse within 3 years of diagnosis.
结直肠癌(Colorectal Cancer,CRC)是一种严重威胁人类健康的消化道恶性肿瘤,其发病率和死亡率均位居前列。其中,美国CRC发病率和死亡率都位于恶性肿瘤第三位,而我国CRC发病率和死亡率为第五位。早期CRC可以通过手术切除,治疗效果较好,患者5年生存率可达90%以上;但目前对转移性CRC缺乏有效的治疗手段,患者5年生存率仅为10%左右。结直肠癌在机体内的发生发展过程十分复杂,临床上多采用手术为主的综合治疗。结直肠癌化疗效果受病人个体差异影响较大,但术后化疗仍有改善预后的意义,且可能是很多病人唯一能得到的治疗,因此针对不同靶点选择靶向药物提高结直肠癌对化疗药物的敏感性、减少无效治疗,对提高病人整体生存率有很重要的意义。Colorectal cancer (CRC) is a gastrointestinal malignancy that seriously threatens human health, and its morbidity and mortality are in the forefront. Among them, the morbidity and mortality of CRC in the United States are ranked third in malignant tumors, while the incidence and mortality of CRC in my country are the fifth. Early-stage CRC can be surgically removed, and the treatment effect is good. The 5-year survival rate of patients can reach more than 90%. However, there is currently no effective treatment for metastatic CRC, and the 5-year survival rate of patients is only about 10%. The occurrence and development process of colorectal cancer in the body is very complicated, and comprehensive treatment is mostly used in clinical practice. The effect of chemotherapy for colorectal cancer is greatly affected by individual differences of patients, but postoperative chemotherapy still has the significance to improve the prognosis, and may be the only treatment that many patients can get. Drug sensitivity and reducing ineffective treatment are of great significance to improving the overall survival rate of patients.
最近的研究指出了mRNA甲基化在基因表达调控中的作用。在真核细胞中,一种 丰富且保守的mRNA修饰是在N-6位的腺苷甲基化,即N6-甲基腺苷(m6A)。m6A是真核细胞中mRNAs丰度最高的甲基化修饰,影响了RNA生命周期的每个过程,如mRNA的稳定性、剪接及前体miRNA加工等,同时也参与了组织发育、干细胞修复分化、DNA损伤应答、生物节律调控和天然免疫调控等生物学过程。m6A在细胞内的稳态由甲基转移酶复合体(METTL3,METTL14,和WTAP等)和去甲基化酶(FTO和ALKBH5)维持,而且m6A识别蛋白(YTHDF1/2和eIF3等)特异性识别m6A位点并将信息传递,由此构建了一套高效有序的m6A调控网络。研究已确定FTO和ALKBH5可介导这种甲基化的可逆去除。此外,YTH结构域家族蛋白是主要的m6A结合蛋白,可调节各种RNA代谢,包括mRNA剪接,降解和翻译。YTHDF1,也称为含YTH结构域的家族蛋白1或C20orf21,是559个氨基酸的蛋白质,其定位于细胞质中。有证据表明,m6A依赖的mRNA调节在哺乳动物中是必不可少的,并且m6A甲基化的缺陷影响多种生物过程。M6A mRNA甲基化正在成为影响多种肿瘤中癌症发生和发展的途径。到目前为止,许多研究证实了m6A修饰在白血病中的功能重要性,例如METTL3,METTL14,FTO和YTHDF2。然而,YTHDF1蛋白在AML和CRC发生发展中的作用仍有待探索。靶向YTHDF1蛋白筛选药物,将为治疗AML和CRC提供了一个新的切入点。Recent studies have pointed to the role of mRNA methylation in the regulation of gene expression. In eukaryotic cells, an abundant and conserved mRNA modification is methylation of adenosine at the N-6 position, N6-methyladenosine (m6A). m6A is the most abundant methylation modification of mRNAs in eukaryotic cells. It affects every process of the RNA life cycle, such as mRNA stability, splicing, and precursor miRNA processing. It is also involved in tissue development, stem cell repair and differentiation. , DNA damage response, biological rhythm regulation and innate immune regulation and other biological processes. The homeostasis of m6A in cells is maintained by methyltransferase complexes (METTL3, METTL14, and WTAP, etc.) and demethylases (FTO and ALKBH5), and m6A recognition proteins (YTHDF1/2 and eIF3, etc.) are specific Identify m6A sites and transmit information, thus constructing an efficient and orderly m6A regulatory network. Studies have determined that FTO and ALKBH5 mediate this reversible removal of methylation. In addition, YTH domain family proteins are major mA-binding proteins that regulate various RNA metabolisms, including mRNA splicing, degradation, and translation. YTHDF1, also known as YTH domain-containing family protein 1 or C20orf21, is a 559 amino acid protein that is localized in the cytoplasm. There is evidence that m6A-dependent mRNA regulation is essential in mammals and that defects in m6A methylation affect a variety of biological processes. M6A mRNA methylation is emerging as a pathway that affects cancer initiation and progression in a variety of tumors. So far, many studies have confirmed the functional importance of m6A modifications in leukemia, such as METTL3, METTL14, FTO and YTHDF2. However, the role of YTHDF1 protein in the development of AML and CRC remains to be explored. Screening drugs targeting YTHDF1 protein will provide a new entry point for the treatment of AML and CRC.
马来酸替加色罗(Tegaserod maleate),商品名泽马可、常罗宁,是一种化学品。化学名称(R)-3-(5-甲氧基-1H-吲哚-3-亚甲基)-N-戊基-亚胺胍马来酸盐,分子式为C
20H
27N
5O
5,分子量为417.46。马来酸替加色罗为选择性的、5-HT
4受体的部分激动剂,临床上主要适用于女性便秘型肠易激综合征患者缓解症状的短期治疗。
Tegaserod maleate, trade name Zemaco, Changronin, is a chemical. Chemical name (R)-3-(5-methoxy-1H-indole-3-methylene)-N-pentyl-iminoguanidine maleate, molecular formula is C 20 H 27 N 5 O 5 , the molecular weight is 417.46. Tegaserod maleate is a selective, partial agonist of 5-HT 4 receptors, which is mainly used for short-term treatment of symptom relief in female patients with constipation-predominant irritable bowel syndrome.
目前关于马来酸替加色罗在胃肠道中表现出促进的作用机理,即马来酸替加色罗是 吲哚类选择性5-HT
4受体的部分激动剂,通过激动胃肠道5-HT
4受体受体刺激胃肠蠕动反射和肠道分泌,并抑制内脏的敏感性。但是,马来酸替加色罗是否能够靶向m6A识别蛋白YTHDF1来治疗急性髓系白血病和结直肠癌,达到延缓急性髓系白血病和结直肠癌进展与提高患者生存的效果现有技术中并未提及,且未有动物实验证明其治疗效果。
At present, the mechanism of action of tegaserod maleate in the gastrointestinal tract is promoted, that is, tegaserod maleate is a partial agonist of indole-type selective 5-HT 4 receptors, which stimulates the gastrointestinal tract by stimulating 5 -HT4 receptors stimulate gastrointestinal peristaltic reflex and intestinal secretion, and inhibit visceral sensitivity. However, whether tegaserod maleate can target m6A recognition protein YTHDF1 to treat acute myeloid leukemia and colorectal cancer, and achieve the effect of delaying the progression of acute myeloid leukemia and colorectal cancer and improving the survival of patients in the prior art. Not mentioned, and there is no animal experiment to prove its therapeutic effect.
发明内容SUMMARY OF THE INVENTION
本发明的一个方面是提供马来酸替加色罗在制备阻断YTHDF1与含m6A修饰的RNA的结合,从而调控下游关键靶基因表达的制剂的应用;在一个具体的实施例中,所述的其中所述的关键基因为CCNE2;在另外一个具体的实施方式中,所述的调控为抑制表达。One aspect of the present invention is to provide the application of tegaserod maleate in preparing a preparation that blocks the binding of YTHDF1 to RNA containing m6A modification, thereby regulating the expression of downstream key target genes; in a specific embodiment, the wherein the key gene is CCNE2; in another specific embodiment, the regulation is inhibiting expression.
本发明的另外一个方面是提供马来酸替加色罗或其药学上可接受的盐在制备治疗肿瘤药物中的应用,其特征在于,所述的马来酸替加色罗通过阻断YTHDF1与含m6A修饰的RNA的结合,从而调控下游关键靶基因的翻译,达到治疗肿瘤的效果。Another aspect of the present invention is to provide the use of tegaserod maleate or a pharmaceutically acceptable salt thereof in the preparation of a medicament for treating tumors, characterized in that the tegaserod maleate blocks YTHDF1 by blocking the Binding with m6A-modified RNA to regulate the translation of downstream key target genes to achieve the effect of treating tumors.
在一个具体的实施例中,所述的肿瘤包括但不限于:本申请中所述肿瘤是选自上腺皮质癌、肛门癌、肛门直肠癌、肛管癌、阑尾癌、小脑星形细胞瘤、脑星形细胞瘤、基底细胞癌、皮肤癌(非黑色素瘤)、胆道癌、肝外胆管癌、肝内胆管癌、膀胱癌、骨关节癌、骨肉瘤、恶性纤维组织细胞瘤、脑癌、脑肿瘤、脑干胶质瘤、室管膜瘤、成神经管细胞瘤、视觉通路和下丘脑神经胶质瘤、乳腺癌、支气管腺瘤、神经系统癌、神经系统淋巴瘤、中枢神经系统癌、中枢神经系统淋巴瘤、宫颈癌、慢性淋巴细胞白血病、慢性粒细胞白血病、慢性骨髓增生性疾病、结肠癌、结直肠癌、皮肤T细胞淋巴瘤、淋巴肿瘤、蕈样真菌病、Sezary综合征、子宫内膜癌、食管癌、颅外生殖细胞肿瘤、性腺外生殖细胞肿瘤、眼癌、眼内黑色素瘤、视网膜母细胞瘤、胆囊癌、胃癌、胃肠道类癌、胃肠道间质瘤(GIST)、生殖细胞肿瘤、卵巢生殖细胞瘤、头颈癌、肝细胞癌、霍奇金淋巴瘤、胰岛细胞瘤、卡波西肉瘤、肾癌、喉癌、急性淋巴细胞白血病、急性髓系白血病、毛细胞白血病、唇和口腔腔癌、肝癌、肺癌、非小细胞肺癌、小细胞肺癌、非霍奇金淋巴瘤、原发性中枢神经系统淋巴瘤、Waldenstroem巨球蛋白血症、黑色素瘤、间皮瘤、转移性鳞癌、舌癌、多发性内分泌肿瘤综合征、骨髓增生异常综合征、多发性骨髓瘤、鼻咽癌、神经母细胞瘤、口咽癌、卵巢癌、卵巢上皮癌、卵巢低恶性潜能肿瘤、胰腺癌、胰岛细胞胰腺癌、鼻窦和鼻腔癌、甲状旁腺癌、阴茎癌、咽癌、嗜铬细胞瘤、松果体瘤、 垂体瘤、浆细胞肿瘤、胸膜肺母细胞瘤、前列腺癌、直肠癌、肾盂和输尿管移行细胞癌、视网膜母细胞瘤、横纹肌肉瘤、唾液腺癌、尤文家族肉瘤、卡波西肉瘤、滑膜肉瘤、子宫癌、子宫肉瘤、小肠癌、软组织肉瘤、鳞状细胞癌、幕上原始神经外胚层肿瘤、睾丸癌、咽喉癌、胸腺瘤、尿道癌、子宫内膜异位症、阴道癌、外阴癌或威尔姆氏肿瘤。In a specific embodiment, the tumor includes but is not limited to: the tumor in this application is selected from adenocortical carcinoma, anal carcinoma, anorectal carcinoma, anal canal carcinoma, appendix carcinoma, cerebellar astrocytoma , brain astrocytoma, basal cell carcinoma, skin cancer (non-melanoma), biliary tract cancer, extrahepatic cholangiocarcinoma, intrahepatic cholangiocarcinoma, bladder cancer, bone and joint cancer, osteosarcoma, malignant fibrous histiocytoma, brain cancer , brain tumor, brain stem glioma, ependymoma, medulloblastoma, visual pathway and hypothalamic glioma, breast cancer, bronchial adenoma, nervous system cancer, nervous system lymphoma, central nervous system Cancer, Central Nervous System Lymphoma, Cervical Cancer, Chronic Lymphocytic Leukemia, Chronic Myeloid Leukemia, Chronic Myeloproliferative Disorders, Colon Cancer, Colorectal Cancer, Cutaneous T-cell Lymphoma, Lymphoma, Mycosis Fungoides, Sezary Syndrome symptoms, endometrial cancer, esophageal cancer, extracranial germ cell tumor, extragonadal germ cell tumor, eye cancer, intraocular melanoma, retinoblastoma, gallbladder cancer, gastric cancer, gastrointestinal carcinoid, intergastrointestinal GIST Lineage leukemia, hairy cell leukemia, lip and oral cavity cancer, liver cancer, lung cancer, non-small cell lung cancer, small cell lung cancer, non-Hodgkin lymphoma, primary central nervous system lymphoma, Waldenstroem macroglobulinemia, melanin tumor, mesothelioma, metastatic squamous cell carcinoma, tongue cancer, multiple endocrine neoplasia syndrome, myelodysplastic syndrome, multiple myeloma, nasopharyngeal carcinoma, neuroblastoma, oropharyngeal carcinoma, ovarian cancer, ovarian epithelial Cancer, ovarian tumors of low malignant potential, pancreatic cancer, islet cell pancreatic cancer, sinus and nasal cavity cancer, parathyroid cancer, penile cancer, pharyngeal cancer, pheochromocytoma, pineal tumor, pituitary tumor, plasma cell tumor, pleura Pulmonary blastoma, prostate cancer, rectal cancer, renal pelvis and ureteral transitional cell carcinoma, retinoblastoma, rhabdomyosarcoma, salivary gland cancer, Ewing family sarcoma, Kaposi's sarcoma, synovial sarcoma, uterine cancer, uterine sarcoma, small bowel cancer , soft tissue sarcoma, squamous cell carcinoma, supratentorial primitive neuroectodermal tumor, testicular cancer, throat cancer, thymoma, urethral cancer, endometriosis, vaginal cancer, vulvar cancer, or Wilm's tumor.
在一个具体的实施例中,所述的肿瘤为血液肿瘤,优选为白血病,更优选为急性髓系白血病。In a specific embodiment, the tumor is a hematological tumor, preferably leukemia, more preferably acute myeloid leukemia.
在另外一个具体的实施例中,所述的肿瘤为实体瘤,优选为结直肠癌。In another specific embodiment, the tumor is a solid tumor, preferably colorectal cancer.
在另外一个具体的实施例中,所述的药学上可接受的盐选自甲磺酸盐、马来酸盐、酒石酸盐、琥珀酸盐、醋酸盐、二氟醋酸盐、富马酸盐、柠檬酸盐、枸橼酸盐、苯磺酸盐、苯甲酸盐、萘磺酸盐、乳酸盐、苹果酸盐、盐酸盐、氢溴酸盐、硫酸盐、以及磷酸盐。In another specific embodiment, the pharmaceutically acceptable salt is selected from mesylate, maleate, tartrate, succinate, acetate, difluoroacetate, fumaric acid Salts, citrates, citrates, benzenesulfonates, benzoates, naphthalenesulfonates, lactates, malates, hydrochlorides, hydrobromides, sulfates, and phosphates.
在另外一个具体的实施例中,其中所述的药物还包括药学上可接受的载体,具体的,所述的“药学上可接受的载体”包括生理学上相容的任意的和所有的溶剂、分散介质、包衣剂、抗细菌剂和抗真菌剂、等渗剂和吸收延迟剂等。在一个实施方案中,所述的载体适合静脉、肌肉、皮下、胃肠外、腹腔、脊柱或表皮施用(例如,通过注射或输注),本申请的药物组合物可以包括一种或多种药学上可接受的盐、抗氧化剂、水性和非水性载体,和/或佐剂,诸如防腐剂、润湿剂、乳化剂和分散剂。In another specific embodiment, the medicament further includes a pharmaceutically acceptable carrier, specifically, the "pharmaceutically acceptable carrier" includes any and all solvents that are physiologically compatible, Dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like. In one embodiment, the carrier is suitable for intravenous, intramuscular, subcutaneous, parenteral, intraperitoneal, spinal or epidermal administration (eg, by injection or infusion), and the pharmaceutical compositions of the present application may include one or more Pharmaceutically acceptable salts, antioxidants, aqueous and non-aqueous carriers, and/or adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents.
在另外的一个具体的实施例中,所述的药物的给药方式包括但不限于所述药物通过静脉、肌肉、皮下、胃肠外、腹腔、脊柱或表皮施用。In another specific embodiment, the mode of administration of the drug includes, but is not limited to, intravenous, intramuscular, subcutaneous, parenteral, intraperitoneal, spinal or epidermal administration of the drug.
在另外的一个实施例中,所述的药物还包含缓冲剂、稳定剂,任选地还含有表面活性剂。缓冲剂可选自醋酸盐、柠檬酸盐、琥珀酸盐、以及磷酸盐中的一种或几种。稳定剂可选自糖或氨基酸,优选二糖,例如蔗糖、乳糖、海藻糖、麦芽糖。表面活性剂选自聚氧乙烯氢化蓖麻油、甘油脂肪酸酯、聚氧乙烯山梨醇酐脂肪酸酯,优选所述聚氧乙烯山梨醇酐脂肪酸酯为聚山梨酯20、In another embodiment, the medicament further comprises a buffer, a stabilizer, and optionally a surfactant. The buffer can be selected from one or more of acetate, citrate, succinate, and phosphate. Stabilizers may be selected from sugars or amino acids, preferably disaccharides such as sucrose, lactose, trehalose, maltose. Surfactant is selected from polyoxyethylene hydrogenated castor oil, glycerin fatty acid ester, polyoxyethylene sorbitan fatty acid ester, preferably described polyoxyethylene sorbitan fatty acid ester is polysorbate 20,
在另外的一个具体实施例中,所述的药物的给药剂量为1-20mg/kg,优选为2-15mg/kg,更有选为3-10mg/kg,最优选为5mg/kg。In another specific embodiment, the dosage of the drug is 1-20 mg/kg, preferably 2-15 mg/kg, more preferably 3-10 mg/kg, most preferably 5 mg/kg.
本发明的另外一个方面是提供马来酸替加色罗在制备用于阻断YTH结构域与含m6A修饰的RNA结合反应的制剂的用途,其中所述的用途为非治疗目的。Another aspect of the present invention is to provide the use of tegaserod maleate in the preparation of a preparation for blocking the binding reaction of the YTH domain with m6A-modified RNA, wherein the use is for non-therapeutic purposes.
本发明的另外一个方面是将YTHDF1作为筛选治疗肿瘤药物的靶点的应用。Another aspect of the present invention is the use of YTHDF1 as a target for screening tumor drugs.
在一个具体的实施例中,所述的肿瘤为血液肿瘤,优选为白血病,更优选为急性髓系白血病。In a specific embodiment, the tumor is a hematological tumor, preferably leukemia, more preferably acute myeloid leukemia.
在另外一个具体的实施例中,所述的肿瘤为实体瘤,优选为消化道肿瘤,更优选为结直肠癌。In another specific embodiment, the tumor is a solid tumor, preferably a gastrointestinal tumor, more preferably a colorectal cancer.
本发明的有益效果包括了1)将急性髓系白血病和结直肠癌的标志物蛋白(YTHDF1)作为筛选用于治疗急性髓系白血病和结直肠癌药物的作用靶点,具体的,利用生物信息学技术,模拟标志物蛋白的高级结构,从上市的治疗药物中进行筛选与其能够特异性结合的药物;进一步的,所述的生物信息学技术是指虚拟筛选技术;更进一步的,所述的药物为化学药物。The beneficial effects of the present invention include 1) using a marker protein of acute myeloid leukemia and colorectal cancer (YTHDF1) as a target for screening drugs for treating acute myeloid leukemia and colorectal cancer, specifically, using biological information Bioinformatics technology, which simulates the high-level structure of the marker protein, and screens the drugs that can specifically bind to it from the marketed therapeutic drugs; further, the bioinformatics technology refers to virtual screening technology; further, the said bioinformatics technology refers to the virtual screening technology; Drugs are chemical drugs.
2)本发明首次发现了用于女性便秘型肠易激综合征患者的药物马来酸替加色罗可以应用于肿瘤的治疗,特别是为急性髓系白血病;2) The present invention finds for the first time that the drug tegaserod maleate for female constipation-type irritable bowel syndrome patients can be applied to the treatment of tumors, especially acute myeloid leukemia;
3)本发明发现了马来酸替加色罗是通过抑制细胞中的m6A识别蛋白YTHDF1的功能,从而达到抑制细胞增殖,使细胞周期阻滞于G1期,以及促进细胞凋亡的效果,实现了对肿瘤的抑制。3) The present invention found that tegaserod maleate is achieved by inhibiting the function of m6A recognition protein YTHDF1 in cells, thereby inhibiting cell proliferation, arresting cell cycle in G1 phase, and promoting cell apoptosis. tumor inhibition.
图1马来酸替加色罗对急性髓系白血病THP-1细胞具有细胞毒性,且具有剂量依赖性,其IC50值为3.58μM(图1a),抑制细胞增殖(图1b),促进细胞凋亡(图1e),使细胞周期停滞于G1期(图1f)。同样地,马来酸替加色罗对人结直肠癌细胞HCT116也具有细胞毒性,且具有剂量依赖性,其IC50值为2.349μM(图1c),抑制细胞增殖(图1d)。Figure 1 Tegaserod maleate is cytotoxic to acute myeloid leukemia THP-1 cells in a dose-dependent manner, with an IC50 value of 3.58 μM (Figure 1a), inhibiting cell proliferation (Figure 1b) and promoting cell apoptosis apoptosis (Fig. 1e), arresting the cell cycle in G1 phase (Fig. 1f). Similarly, tegaserod maleate was also cytotoxic to human colorectal cancer cells HCT116 in a dose-dependent manner, with an IC50 value of 2.349 μM (Fig. 1c), and inhibited cell proliferation (Fig. 1d).
图2马来酸替加色罗阻断m6A识别蛋白YTHDF1与含m6A修饰的RNAs的结合,其K
D值为0.7993μM(图2a)。对THP-1细胞施用马来酸替加色罗,分别检测YTHDF1和CCNE2的表达情况,以DMSO为对照,施用马来酸替加色罗使得YTHDF1蛋白水平不改变,而CCNE2蛋白表达水平下调(图2b)。
Fig. 2 Tegaserod maleate blocked the binding of m6A recognition protein YTHDF1 to m6A-modified RNAs with a K D value of 0.7993 μM (Fig. 2a). Tegaserod maleate was administered to THP-1 cells, and the expressions of YTHDF1 and CCNE2 were detected respectively. Taking DMSO as a control, administration of tegaserod maleate did not change the protein level of YTHDF1, while the protein expression level of CCNE2 was down-regulated ( Figure 2b).
图3利用重度免疫缺陷NCG小鼠,在异种移植人类THP-1细胞构建AML小鼠模型中,施用马来酸替加色罗可以延长小鼠生存时间,以及阻碍白血病进展。Fig. 3 In a mouse model of AML established by xenografting human THP-1 cells using severely immunodeficient NCG mice, administration of tegaserod maleate can prolong the survival time of mice and hinder the progression of leukemia.
实验方法experimental method
1、材料1. Materials
急性髓系白血病细胞系THP-1、人结直肠癌细胞HCT116由中国科学院干细胞库提供;RPMI1640、DMEM购于Gibco公司;胎牛血清购于Hyclone公司。Cell CountingKit-8试剂购于DOJINDO公司,hCD45-FITC抗体、hCD117-PE-Cy7抗体、凋亡试剂盒与细胞周期试剂购于eBioscience公司。YTHDF1和CCNE2抗体分别购于Proteintech和CST公司。引物委托杭州有康生物公司合成。马来酸替加色罗购买自MCE公司(HY-14153A);其他药品为国产分析纯。瑞氏-姬姆萨染色液购于BASO公司;重度免疫缺陷NCG小鼠购于江苏集萃药康生物公司。Acute myeloid leukemia cell line THP-1 and human colorectal cancer cell line HCT116 were provided by Stem Cell Bank of Chinese Academy of Sciences; RPMI1640 and DMEM were purchased from Gibco Company; fetal bovine serum was purchased from Hyclone Company. Cell CountingKit-8 reagent was purchased from DOJINDO Company, hCD45-FITC antibody, hCD117-PE-Cy7 antibody, apoptosis kit and cell cycle reagent were purchased from eBioscience Company. YTHDF1 and CCNE2 antibodies were purchased from Proteintech and CST, respectively. The primers were synthesized by Hangzhou Youkang Biological Company. Tegaserod maleate was purchased from MCE Company (HY-14153A); other drugs were of domestic analytical grade. Wright-Giemsa staining solution was purchased from BASO Company; Severe immunodeficiency NCG mice were purchased from Jiangsu JiCui Yaokang Biological Company.
2、细胞培养2. Cell culture
急性髓系白血病细胞系悬浮生长于含10%胎牛血清的RPMI 1640培养液中,人结直肠癌细胞系贴壁生长于含10%胎牛血清的DMEM培养液中,于37℃,5%CO2湿化培养箱中培养,隔天传代一次。Acute myeloid leukemia cell lines were grown in suspension in RPMI 1640 medium containing 10% fetal bovine serum, and human colorectal cancer cell lines were adherently grown in DMEM medium containing 10% fetal bovine serum at 37°C, 5% Cultured in a CO2 humidified incubator and passaged every other day.
3、CCK-8细胞增殖实验:3. CCK-8 cell proliferation experiment:
细胞增殖实验采用DOJINDO公司细胞增殖及细胞毒性检测试剂盒(CCK-8):Cell proliferation experiments were performed using DOJINDO's Cell Proliferation and Cytotoxicity Detection Kit (CCK-8):
(1)取对数生长期的THP-1细胞10000个/孔,HCT116细胞20000个/孔,接种于96孔板,每孔加含不同药物浓度的培养液至终体积100μl;置37℃,5%CO2培养;并设3个复孔,3个对照孔(不加细胞只加培养液的空白对照)。(1) Take 10,000 THP-1 cells/well and 20,000 HCT116 cells/well in logarithmic growth phase and inoculate them in a 96-well plate, add culture medium containing different drug concentrations to each well to a final volume of 100 μl; set at 37°C, 5% CO2 culture; 3 duplicate wells and 3 control wells (blank control without cells and only culture medium).
(2)细胞接种后按0h计时,在0h、12h、24h及72h后,分别在实验孔内加入10μl CCK-8溶液,37℃孵育4h。(2) After the cells were inoculated, the time was 0 h. After 0 h, 12 h, 24 h and 72 h, 10 μl of CCK-8 solution was added to the experimental wells and incubated at 37°C for 4 h.
(3)酶联免疫监测仪测定450nm波长的吸光度,以对照调零,以时间为横坐标,吸光值为纵坐标绘制细胞生长曲线。(3) The absorbance at the wavelength of 450 nm was measured by an enzyme-linked immunosorbent monitor, and the cell growth curve was drawn with the time as the abscissa and the absorbance value as the ordinate.
4、细胞凋亡实验4. Apoptosis assay
(1)取对数生长期的细胞,接种于6孔板,每孔加含不同药物浓度的培养液至终体积3ml;置37℃,5%CO2培养;并设3个复孔,3个对照孔(DMSO)。(1) Take the cells in the logarithmic growth phase and inoculate them in a 6-well plate, add culture medium containing different drug concentrations to each well to a final volume of 3ml; set it at 37°C, 5% CO2 for culture; and set up 3 duplicate wells, 3 Control wells (DMSO).
(2)收集细胞,取100μl细胞悬液重悬于流式管,分别加入Annexin V-APC和Propidium iodide流式抗体,室温条件下避光孵育15min。(2) Collect cells, resuspend 100 μl of cell suspension in a flow tube, add Annexin V-APC and Propidium iodide flow antibodies respectively, and incubate at room temperature for 15 minutes in the dark.
(3)流式细胞仪检测细胞凋亡,以DMSO组为对照,比较细胞凋亡的比例。(3) Cell apoptosis was detected by flow cytometry, and the ratio of cell apoptosis was compared with DMSO group as control.
5、细胞周期实验5. Cell cycle experiments
(1)取对数生长期的细胞,接种于6孔板,每孔加含不同药物浓度的培养液至终 体积3ml;置37℃,5%CO2培养;并设3个复孔,3个对照孔(DMSO)。(1) Take the cells in the logarithmic growth phase and inoculate them in a 6-well plate, add culture medium containing different drug concentrations to each well to a final volume of 3ml; set it at 37°C, 5% CO2 for culture; and set up 3 duplicate wells, 3 Control wells (DMSO).
(2)收集细胞,取1x10
6细胞/管,PBS洗涤两次,每次1000rpm,离心5分钟。
(2) Collect cells, take 1×10 6 cells/tube, wash twice with PBS, and centrifuge for 5 minutes at 1000 rpm each time.
(3)去除上清,加入1ml于-20℃预冷的70%乙醇,振荡混匀后将标本保存于-20℃过夜。(3) Remove the supernatant, add 1 ml of 70% ethanol pre-cooled at -20°C, shake and mix well, and store the specimen at -20°C overnight.
(4)取出样本,1000rpm,离心5分钟,去除上清,PBS洗涤一次,1000rpm,离心5分钟。(4) Take out the sample, centrifuge at 1000 rpm for 5 minutes, remove the supernatant, wash once with PBS, and centrifuge at 1000 rpm for 5 minutes.
(5)去除上清,加入染色液,即由PBS稀释PI(40μg/ml),RNase A,DNase and protease-free(0.2mg/ml)组成,充分混匀,避光孵育15min。(5) Remove the supernatant, add the staining solution, which is composed of PI (40μg/ml) diluted with PBS, RNase A, DNase and protease-free (0.2mg/ml), mix well, and incubate in the dark for 15min.
(6)流式细胞仪检测细胞周期。(6) The cell cycle was detected by flow cytometry.
6、免疫印迹法6. Immunoblotting
SDS-PAGE分离蛋白质,转膜、封闭、一抗孵育过夜,辣根过氧化物酶(HRP)标记的二抗室温孵育1小时,加入底物ECL显色,化学发光成像仪扫描获取结果。Proteins were separated by SDS-PAGE, transferred to membrane, blocked, incubated with primary antibody overnight, and incubated with horseradish peroxidase (HRP)-labeled secondary antibody at room temperature for 1 hour. Substrate ECL was added to develop color, and the results were obtained by scanning with a chemiluminescence imager.
7、骨髓(BM)细胞瑞氏-姬姆萨染色7. Wright-Giemsa staining of bone marrow (BM) cells
骨髓细胞染色采用BASO公司的瑞氏-姬姆萨染色液试剂盒。Bone marrow cells were stained with Wright-Giemsa staining kit from BASO.
(1)分离小鼠的股骨,去除两端干骺端,用400μl PBS反复冲洗骨髓腔于1.5ml Ep管内收集细胞,吸取10μl骨髓液滴加于载玻片上,用另一块载玻片涂片;(1) Separate the femur of the mouse, remove the metaphysis at both ends, rinse the bone marrow cavity with 400 μl PBS repeatedly, collect the cells in a 1.5 ml Ep tube, pipette 10 μl bone marrow dropwise onto a glass slide, and smear with another glass slide ;
(2)在干燥的血涂片上滴加0.5ml~1ml的A液,染色1分钟(注意:A液全程湿润覆盖,切勿让A液染料晾干);(2) Add 0.5ml to 1ml of A solution dropwise on the dry blood smear, and dye for 1 minute (Note: A solution is wet and covered throughout, do not let A solution dye dry);
(3)将B液滴加于A液上(滴加量为A液的2~3倍),用洗耳球吹风或者轻晃载玻片,使两夜充分混合,染色3-10分钟;(3) Add drop B on solution A (the drop amount is 2 to 3 times that of solution A), blow air with ear-washing balls or shake the glass slide gently, mix thoroughly for two nights, and stain for 3-10 minutes;
(4)水洗(冲洗时不能先倒掉染料,应以流水冲洗,以防染料沉渣再标本上),待干,镜检。(4) Wash with water (the dye should not be poured out first when rinsing, it should be washed with running water to prevent the dye residue from re-applying on the specimen), let it dry, and then perform microscopic examination.
8、AML肿瘤负荷检测实验8. AML tumor burden detection experiment
分离小鼠的股骨,收集骨髓细胞,加入抗人的CD45和CD177抗体,孵育30分钟,裂解红细胞,PBS洗涤2次,流式细胞仪检测小鼠肿瘤负荷。The femurs of mice were isolated, bone marrow cells were collected, anti-human CD45 and CD177 antibodies were added, and the cells were incubated for 30 minutes. The red blood cells were lysed, washed twice with PBS, and the tumor load of the mice was detected by flow cytometry.
9、异种移植人类AML细胞构建AML小鼠模型9. Xenotransplantation of human AML cells to construct an AML mouse model
收集1×10
6细胞重悬于200μl的PBS中,无菌操作尾静脉注射于8-10周龄的雄性重度免疫缺陷NCG小鼠,流式检测确认白血病细胞植入成功之后,隔天给药和称量小鼠体重,观察小鼠生命状态。
1×10 6 cells were collected and resuspended in 200 μl of PBS, and injected into 8-10-week-old male severely immunodeficient NCG mice through the tail vein aseptically. After the successful engraftment of leukemia cells was confirmed by flow cytometry, the drug was administered every other day. And weigh the weight of the mice to observe the life status of the mice.
10、SPR检测-SA芯片10. SPR detection-SA chip
使用Biacore T200仪器(GE Healthcare)通过SPR实验评估含m6A和非m6A的RNA与YTHDF1蛋白的结合亲和力。将系列浓度的YTHDF1蛋白注入流动系统并分别进行分析。接下来,将一系列浓度的化合物注入流动系统并分析90s,解离为120s。关联时间设置为120s,而解离时间设置为360s。解离后,芯片表面通过50mM NaOH和1M NaCl再生。在分析之前,先进行两次参考减法以消除体折射率的变化,注入噪声和数据漂移。通过对Biacore评估软件(GE Healthcare)中的Langmuir 1:1结合模型进行整体拟合来确定结合亲和力。The binding affinity of m6A- and non-m6A-containing RNAs to YTHDF1 protein was assessed by SPR experiments using a Biacore T200 instrument (GE Healthcare). Serial concentrations of YTHDF1 protein were injected into the flow system and analyzed separately. Next, a series of concentrations of compounds were injected into the flow system and analyzed for 90 s, with dissociation for 120 s. The association time was set to 120s, while the dissociation time was set to 360s. After dissociation, the chip surface was regenerated by 50 mM NaOH and 1 M NaCl. Before analysis, two reference subtractions were performed to remove changes in bulk refractive index, injected noise and data drift. Binding affinity was determined by ensemble fitting to the Langmuir 1:1 binding model in Biacore evaluation software (GE Healthcare).
实施例1药物筛选Example 1 Drug Screening
首先,从PDB数据库(http://www.rcsb.org)中获取hYTHDF1的晶体结构PDB ID:4RCJ。确定以hYTHDF1蛋白m6A结合区域作为虚拟筛选的对接口袋,虚拟筛选所用软件为
Maestro 11.4。使用Protein Preparation Wizard Panel模块对蛋白进行处理:去水、加氢、优化结构、删除多余链、能量最小化等,将hYTHDF1蛋白m6A结合区域作为对接口袋,用Receptor Grid Generation模块制作格点文件,盒子大小为
然后,准备化合物:将FDA-Approved Drug Library(含1805个化合物)的2D格式通过LigPrep Module模块进行处理,输出3D结构。最后,虚拟筛选:采用Virtual Screening Workflow模块进行虚拟筛选,将准备好的化合物导入,利用Glide模块进行分子对接,即受体和配体分子之间通过几何匹配和能量匹配而互相对接。采用Glide模块中高精度(XP)模式进行筛选,获得小分子化合物的排名。最后进行人工挑选,即人工复核靶点与化合物结合力、化合物结构等,优选出FDA-Approved Drug Library排名前21名化合物输出,并用细胞生物学实验证实筛选出来的化合物抑制效果。
First, the crystal structure PDB ID: 4RCJ of hYTHDF1 was obtained from the PDB database (http://www.rcsb.org). The m6A binding region of hYTHDF1 protein was determined as the docking pocket for virtual screening, and the software used for virtual screening was Maestro 11.4. Use the Protein Preparation Wizard Panel module to process the protein: dewatering, hydrogenation, structure optimization, deletion of redundant chains, energy minimization, etc., using the m6A binding region of hYTHDF1 protein as a docking pocket, and using the Receptor Grid Generation module to make grid files, boxes size is Then, prepare the compounds: The 2D format of the FDA-Approved Drug Library (containing 1805 compounds) is processed through the LigPrep Module module to output the 3D structure. Finally, virtual screening: Virtual Screening Workflow module is used for virtual screening, the prepared compounds are imported, and the Glide module is used for molecular docking, that is, the receptor and ligand molecules are docked with each other through geometric matching and energy matching. Screening was performed using the high precision (XP) mode in the Glide module to obtain the ranking of small molecule compounds. Finally, manual selection is carried out, that is, the binding force between the target and the compound, the structure of the compound, etc. are manually checked, and the top 21 compounds in the FDA-Approved Drug Library are selected for output, and the inhibitory effect of the selected compounds is confirmed by cell biology experiments.
最终,针对急性髓系白血病的标志物蛋白(YTHDF1)筛选已上市药物,发现马来酸替加色罗(Tegaserod maleate),能够抑制YTHDF1蛋白的功能,从而抑制其在急性髓系白血病和结直肠癌中的作用。Finally, the marketed drugs were screened against the marker protein of acute myeloid leukemia (YTHDF1), and it was found that Tegaserod maleate could inhibit the function of YTHDF1 protein, thereby inhibiting its function in acute myeloid leukemia and colorectal cancer. role in cancer.
实施例2马来酸替加色罗的细胞学实验 Embodiment 2 Cytological experiment of tegaserod maleate
取培养状态良好的急性髓系白血病THP-1细胞和人结直肠癌HCT116细胞,对其施用不同浓度的马来酸替加色罗,观察马来酸替加色罗对于细胞的毒性,以及细胞的增殖、细胞周期、凋亡情况。Take well-cultured acute myeloid leukemia THP-1 cells and human colorectal cancer HCT116 cells, and administer tegaserod maleate with different concentrations to them to observe the toxicity of tegaseroate maleate to cells, and the cellular proliferation, cell cycle, and apoptosis.
首先,我们发现通过细胞凋亡实验发现马来酸替加色罗具有细胞毒性,其对THP-1细胞和HCT116细胞的IC50分别为为3.58μM、2.349μM(参见图1a、1c);且其对于THP-1细胞和HCT116细胞的增殖具有浓度依赖的抑制作用(参见图1b、1d);First, we found that tegaserod maleate was cytotoxic through apoptosis experiments, and its IC50 for THP-1 cells and HCT116 cells were 3.58 μM and 2.349 μM, respectively (see Figure 1a, 1c); It has a concentration-dependent inhibitory effect on the proliferation of THP-1 cells and HCT116 cells (see Figure 1b, 1d);
同时其能给诱导THP-1细胞的凋亡、使THP-1细胞周期停滞于G1期(参见图1c和1d)。At the same time, it can induce apoptosis of THP-1 cells and arrest the THP-1 cell cycle in G1 phase (see Figure 1c and 1d).
实施例3马来酸替加色罗阻断YTHDF1蛋白与含m6A修饰的RNA的结合能力Example 3 The ability of tegaserod maleate to block the binding of YTHDF1 protein to RNA containing m6A modification
基于实施例1的虚拟筛选的结果以及本领域技术人员所知晓的m6A识别蛋白与急性髓系白血病、结直肠癌的关系,我们预测马来酸替加色罗与急性髓系白血病、结直肠癌的m6A识别蛋白YTHDF1有关,因此我们推测当对细胞施用马来酸替加色罗时,可以抑制YTHDF1的功能及关键靶基因,为此,我们利用Biacore系统证实了施用马来酸替加色罗能够阻断m6A识别蛋白YTHDF1与含m6A修饰的RNA的结合,结果如图2a所示。Based on the results of virtual screening in Example 1 and the relationship between m6A recognition protein and acute myeloid leukemia and colorectal cancer known to those skilled in the art, we predicted that tegaserod maleate would be associated with acute myeloid leukemia and colorectal cancer. The m6A recognition protein of YTHDF1 is related to YTHDF1, so we speculate that when tegaserod maleate is administered to cells, the function and key target genes of YTHDF1 can be inhibited. It can block the binding of m6A recognition protein YTHDF1 to m6A-modified RNA, and the results are shown in Figure 2a.
同时,我们采用免疫印迹法发现,THP-1细胞在马来酸替加色罗药物处理后,周期素E2(cyclin E2,CCNE2)蛋白水平下调,而YTHDF1蛋白水平不发生改变,提示马来酸替加色罗抑制YTHDF1蛋白的功能,导致下游关键靶基因CCNE2的翻译能力下降,达到了阻碍白血病细胞进展的目的(图2b)。At the same time, we used western blotting to find that after THP-1 cells were treated with tegaserod maleate, the protein level of cyclin E2 (CCNE2) was down-regulated, while the protein level of YTHDF1 did not change, suggesting that maleic acid Tegaserod inhibited the function of YTHDF1 protein, resulting in a decrease in the translation ability of the downstream key target gene CCNE2, and achieved the purpose of hindering the progression of leukemia cells (Figure 2b).
实施例4异种移植人类AML细胞构建AML小鼠模型实验Example 4 Xenotransplantation of human AML cells to construct an AML mouse model experiment
为进一步验证马来酸替加色罗治疗急性髓系白血病的作用,我们进行了小鼠实验,即在异种移植人类AML细胞构建AML小鼠模型中,5mg/kg马来酸替加色罗显著延长小鼠生存时间。In order to further verify the effect of tegaserod maleate in the treatment of acute myeloid leukemia, we conducted a mouse experiment, that is, in the xenotransplantation of human AML cells to construct an AML mouse model, 5mg/kg of tegaseroate maleate significantly prolong the survival time of mice.
AML肿瘤负荷结果及骨髓涂片显示,马来酸替加色罗能够阻碍急性髓系白血病进展过程(参见图3)。AML tumor burden results and bone marrow smears showed that tegaserod maleate can block the progression of acute myeloid leukemia (see Figure 3).
本领域技术人员所公知的是,上述的具体实施例是本领域已知的最佳的实施方式,但是其并不对本申请请求保护的范围有所限制,所属领域技术人员所熟知的本领域的普遍技术均可纳入本申请所要求保护的范围。It is well known to those skilled in the art that the above-mentioned specific embodiments are the best implementations known in the art, but they do not limit the scope of protection of the present application. Common techniques can be included in the scope of protection claimed in this application.
Claims (10)
- 马来酸替加色罗在制备阻断YTHDF1与含m6A修饰的RNA的结合,从而调控下游关键靶基因表达的制剂的应用,所述的应用为非治疗目的。The application of tegaserod maleate in the preparation of a preparation for blocking the binding of YTHDF1 to RNA containing m6A modification, thereby regulating the expression of downstream key target genes, the application is for non-therapeutic purposes.
- 根据权利要求1所述的应用,其中所述的关键基因为CCNE2,所述的调控为抑制表达。The application according to claim 1, wherein the key gene is CCNE2, and the regulation is inhibiting expression.
- 马来酸替加色罗或其药学上可接受的盐在制备治疗肿瘤药物中的应用,其特征在于,所述的马来酸替加色罗通过阻断YTHDF1与含m6A修饰的RNA的结合,从而调控下游关键靶基因的翻译,达到治疗肿瘤的效果。The application of tegaserod maleate or a pharmaceutically acceptable salt thereof in the preparation of a drug for treating tumors, characterized in that the tegaserod maleate blocks the binding of YTHDF1 to RNA containing m6A modification , so as to regulate the translation of downstream key target genes and achieve the effect of tumor treatment.
- 根据权利要求3所述的应用,所述的肿瘤为血液肿瘤,优选为白血病,更优选为急性髓系白血病;或者所述的肿瘤为实体瘤,优选为结直肠癌。According to the application of claim 3, the tumor is a hematological tumor, preferably leukemia, more preferably acute myeloid leukemia; or the tumor is a solid tumor, preferably colorectal cancer.
- 权利要求3-4任一一项所述的应用,所述的药学上可接受的盐选自甲磺酸盐、马来酸盐、酒石酸盐、琥珀酸盐、醋酸盐、二氟醋酸盐、富马酸盐、柠檬酸盐、枸橼酸盐、苯磺酸盐、苯甲酸盐、萘磺酸盐、乳酸盐、苹果酸盐、盐酸盐、氢溴酸盐、硫酸盐、以及磷酸盐。The application described in any one of claims 3-4, the pharmaceutically acceptable salt is selected from mesylate, maleate, tartrate, succinate, acetate, difluoroacetic acid Salt, Fumarate, Citrate, Citrate, Besylate, Benzoate, Naphthalene Sulfonate, Lactate, Malate, Hydrochloride, Hydrobromide, Sulfate , and phosphates.
- 权利要求3-5任一项所述的用途,其中所述的药物还包括药学上可接受的载体,优选的,所述的药学上可接受的载体包括生理学上相容的任意的溶剂、分散介质、包衣剂、抗细菌剂和抗真菌剂、等渗剂和吸收延迟剂。The use according to any one of claims 3-5, wherein the medicine further comprises a pharmaceutically acceptable carrier, preferably, the pharmaceutically acceptable carrier comprises any physiologically compatible solvent, dispersion Vehicles, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents.
- 权利要求3-6任一项所述的用途,其中所述的被调节翻译的关键的靶基因为CCNE2。The use of any one of claims 3-6, wherein the key target gene whose translation is regulated is CCNE2.
- 根据权利要求3-10所述的用途,其中给药剂量为1-20mg/kg,优选为2-15mg/kg,更有选为3-10mg/kg,最优选为5mg/kg。Use according to claims 3-10, wherein the administered dose is 1-20 mg/kg, preferably 2-15 mg/kg, more preferably 3-10 mg/kg, most preferably 5 mg/kg.
- 马来酸替加色罗在制备用于阻断YTH结构域与含m6A修饰的RNA结合反应的制剂的用途,其中所述的用途为非治疗目的。The use of tegaserod maleate in the preparation of a preparation for blocking the binding reaction of a YTH domain with an RNA containing m6A modification, wherein the use is for non-therapeutic purposes.
- YTHDF1作为筛选治疗肿瘤药物的靶点的应用;优选的,所述的肿瘤为血液肿瘤或实体瘤,优选为白血病,更优选为急性髓性白血病或结直肠癌。The application of YTHDF1 as a target for screening tumor drugs; preferably, the tumor is a hematological tumor or a solid tumor, preferably leukemia, more preferably acute myeloid leukemia or colorectal cancer.
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