WO2021255213A1 - Heterobifunctional compounds as degraders of braf - Google Patents

Heterobifunctional compounds as degraders of braf Download PDF

Info

Publication number
WO2021255213A1
WO2021255213A1 PCT/EP2021/066526 EP2021066526W WO2021255213A1 WO 2021255213 A1 WO2021255213 A1 WO 2021255213A1 EP 2021066526 W EP2021066526 W EP 2021066526W WO 2021255213 A1 WO2021255213 A1 WO 2021255213A1
Authority
WO
WIPO (PCT)
Prior art keywords
dioxo
amino
methyl
piperidyl
difluoro
Prior art date
Application number
PCT/EP2021/066526
Other languages
French (fr)
Inventor
Cosimo Dolente
David Stephen HEWINGS
Daniel Hunziker
Bernd Kuhn
Piergiorgio Francesco Tommaso PETTAZZONI
Fabienne Ricklin
Claus Riemer
Juergen Wichmann
Original Assignee
F. Hoffmann-La Roche Ag
Hoffmann-La Roche Inc.
C4 Therapeutics, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by F. Hoffmann-La Roche Ag, Hoffmann-La Roche Inc., C4 Therapeutics, Inc. filed Critical F. Hoffmann-La Roche Ag
Publication of WO2021255213A1 publication Critical patent/WO2021255213A1/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents

Definitions

  • Present invention provides compounds that cause specifically the degradation of BRAF, via the ubiquitination of the BRAF protein and subsequent proteasomal degradation.
  • the present compounds are useful for the treatment of various cancers.
  • BRAF V600E/K mutations are often observed in a variety of human tumors including Melanoma, Tyroid cancer, Colorectal cancer, Lung Cancer and others. Despite the evident therapeutic benefits exerted by available BRAF inhibitors in the clinic in many of these indications, the duration of the antitumor response to these drugs is limited by the acquisition of drug resistance.
  • the BRAF protein presents a peculiar mechanism for signaling propagation that require protein homo (BRAF -BRAF) or hetero-dimerization with other RAF proteins (BRAF -RAF 1 or BRAF-ARAF).
  • BRAF is mutated, as observed in oncological indications with BRAF V600E/K substitution, BRAF signaling become independent from the generation of homo and/or heterodimers.
  • the kinase became hyperactivated as monomeric protein and drive cellular proliferative signals.
  • Targeted protein degradation is an emerging mode of action, which induce target ubiquitination by recruiting a specific E3 ligase thus promoting proteasome-mediated disruption of the engaged target.
  • BRAF trough targeted degradation offers evident advantage over conventional inhibition since allows eliminating scaffolding activities of BRAF V600E/K and particularly, by inducing BRAF protein extinction, it can prevent and exert activity on dimerization-mediated mechanisms of resistance.
  • BRAF protein abrogation could represent a strategy to delay the onset of resistance acquisition as well potentially targeting tumors that acquired resistance to available inhibitors offering novel therapeutic opportunities in the treatment of BRAF V600E/K mutated tumors like melanoma, colorecal cancer, lung cancer.
  • Present invention provides compounds that cause specifically the degradation of BRAF presenting the mutation V600E via the targeted ubiquitination of the BRAF protein and subsequent proteasomal degradation.
  • the present compounds bind to the ubiquitously expressed E3 ligase protein cereblon (CRBN) on one hand and alter the substrate specificity of the CRBN E3 ubiquitin ligase complex, resulting in the recruitment and ubiquitination of BRAF V600E.
  • CRBN E3 ligase protein cereblon
  • the present compounds are also effective binders of WT BRAF, RAFl and ARAF, however effective targeted degradation is triggered by these compounds only for BRAF V600E.
  • Present invention provides compounds of formula I or II, or a pharmaceutically acceptable salt thereof, wherein the substituents and variables are as described below and in the claims, or a pharmaceutically acceptable salt thereof.
  • the present compounds are useful for the therapeutic and/or prophylactic treatment of cancer.
  • the present invention provides a compound of formula I or II and their pharmaceutically acceptable salts thereof, the preparation of the above mentioned compounds, medicaments containing them and their manufacture as well as the use of the above mentioned compounds in the therapeutic and/or prophylactic treatment of cancer.
  • Ci- 6 -alkyl stands for a hydrocarbon radical which may be linear or branched, with single or multiple branching, wherein the alkyl group in general comprises 1 to 6 carbon atoms, for example, methyl (Me), ethyl (Et), propyl, isopropyl (i-propyl), n-butyl, i-butyl (isobutyl), 2-butyl (sec-butyl), t-butyl (/tvV-butyl), isopentyl, 2-ethyl-propyl (2 -methyl -propyl), 1,2-dimethyl -propyl and the like.
  • Specific groups are methyl and ethyl.
  • C3-8-cycloalkyl denotes a monovalent saturated monocyclic or bicyclic hydrocarbon group of 3 to 8 ring carbon atoms.
  • Bicyclic means a ring system consisting of two saturated carbocycles having one or two carbon atoms in common.
  • Examples of monocyclic C3-8- cycloalkyl are cyclopropyl, cyclobutanyl, cyclopentyl, cyclohexyl or cycloheptyl.
  • Example of bicyclic C3-8-cycloalkyl is spiro[3.3]heptanyl.
  • Particular monocyclic C3-8-cycloalkyl groups are cyclopropyl, cyclobutanyl. More particular monocyclic C3-8-cycloalkyl group is cyclopropyl.
  • halogen alone or in combination with other groups, denotes chloro (Cl), iodo (I), fluoro (F) and bromo (Br). Specific group is F.
  • heterocycloalkyl denotes a monovalent saturated or partly unsaturated mono- or bicyclic ring system of 4 to 9 ring atoms, comprising 1, 2, or 3 ring heteroatoms selected from N, O and S, the remaining ring atoms being carbon which is optionally substituted with oxo. Bicyclic means consisting of two cycles having one or two ring atoms in common.
  • the heterocycloalkyl is preferably a monovalent saturated or partly unsaturated monocyclic ring system of 4 to 6 ring atoms, comprising 1 or 2 ring heteroatoms selected from N, O and S (4- to 6- membered heterocycloalkyl).
  • Examples for monocyclic saturated heterocycloalkyl are 4,5-dihydro-oxazolyl, oxetanyl, azetidinyl, pyrrolidinyl, 2-oxo-pyrrolidin-4-yl, 3-oxo- morpholin-6-yl, tetrahydrofuranyl, tetrahydrothiophenyl, pyrazolidinyl, imidazolidinyl, oxazolidinyl, isoxazolidinyl, thiazolidinyl, piperidinyl, tetrahydropyranyl, tetrahydrothiopyranyl, piperazinyl, morpholinyl, thiomorpholinyl, l,l-dioxo-thiomorpholin-4-yl, azepanyl, diazepanyl, homopiperazinyl, or oxazepanyl.
  • bicyclic saturated heterocycloalkyl examples include oxabicyclo[2.2.1]heptanyl, oxaspiro[3.3]heptanyl, 8-aza-bicyclo[3.2.1]octyl, quinuclidinyl, 8- oxa-3-aza-bicyclo[3.2.1]octyl, 9-aza-bicyclo[3.3.1]nonyl, 3-oxa-9-aza-bicyclo[3.3.1]nonyl, or 3- thia-9-aza-bicyclo[3.3.1]nonyl.
  • heterocycloalkyl examples include dihydrofuryl, imidazolinyl, dihydro-oxazolyl, tetrahydro-pyridinyl or dihydropyranyl.
  • Heterocyclyl is preferably azetidinyl, morpholinyl, pyrrolidinyl, piperazinyl, oxetanyl, 2-oxo- pyrrolidin-4-yl, or 3-oxo- morpholin-6-yl.
  • Particular heterocycloalkyl is pyrrolidinyl.
  • pharmaceutically acceptable denotes an attribute of a material which is useful in preparing a pharmaceutical composition that is generally safe, non-toxic, and neither biologically nor otherwise undesirable and is acceptable for veterinary as well as human pharmaceutical use.
  • a pharmaceutically acceptable salt refers to a salt that is suitable for use in contact with the tissues of humans and animals.
  • suitable salts with inorganic and organic acids are, but are not limited to acetic acid, citric acid, formic acid, fumaric acid, hydrochloric acid, lactic acid, maleic acid, malic acid, methane-sulfonic acid, nitric acid, phosphoric acid, p- toluenesulphonic acid, succinic acid, sulfuric acid (sulphuric acid), tartaric acid, trifluoroacetic acid and the like.
  • Particular acids are formic acid, trifluoroacetic acid and hydrochloric acid.
  • auxiliary substance refers to carriers and auxiliary substances such as diluents or excipients that are compatible with the other ingredients of the formulation.
  • pharmaceutical composition encompasses a product comprising specified ingredients in pre-determined amounts or proportions, as well as any product that results, directly or indirectly, from combining specified ingredients in specified amounts. Particularly it encompasses a product comprising one or more active ingredients, and an optional carrier comprising inert ingredients, as well as any product that results, directly or indirectly, from combination, complexation or aggregation of any two or more of the ingredients, or from dissociation of one or more of the ingredients, or from other types of reactions or interactions of one or more of the ingredients.
  • “Therapeutically effective amount” means an amount of a compound that, when administered to a subject for treating a disease state, is sufficient to effect such treatment for the disease state. The “therapeutically effective amount” will vary depending on the compound, disease state being treated, the severity or the disease treated, the age and relative health of the subject, the route and form of administration, the judgment of the attending medical or veterinary practitioner, and other factors.
  • variable incorporates by reference the broad definition of the variable as well as particularly, more particularly and most particularly definitions, if any.
  • treating when referring to a chemical reaction means adding or mixing two or more reagents under appropriate conditions to produce the indicated and/or the desired product. It should be appreciated that the reaction which produces the indicated and/or the desired product may not necessarily result directly from the combination of two reagents which were initially added, i.e., there may be one or more intermediates which are produced in the mixture which ultimately leads to the formation of the indicated and/or the desired product.
  • pharmaceutically acceptable excipient denotes any ingredient having no therapeutic activity and being non-toxic such as disintegrators, binders, fillers, solvents, buffers, tonicity agents, stabilizers, antioxidants, surfactants or lubricants used in formulating pharmaceutical products.
  • composition encompasses a product comprising specified ingredients in pre-determined amounts or proportions, as well as any product that results, directly or indirectly, from combining specified ingredients in specified amounts. Particularly it encompasses a product comprising one or more active ingredients, and an optional carrier comprising inert ingredients, as well as any product that results, directly or indirectly, from combination, complexation or aggregation of any two or more of the ingredients, or from dissociation of one or more of the ingredients, or from other types of reactions or interactions of one or more of the ingredients.
  • inhibitor denotes a compound which competes with, reduces or prevents the binding of a particular ligand to particular receptor or which reduces or prevents the function of a particular protein.
  • “Therapeutically effective amount” means an amount of a compound that, when administered to a subject for treating a disease state, is sufficient to effect such treatment for the disease state.
  • the “therapeutically effective amount” will vary depending on the compound, disease state being treated, the severity or the disease treated, the age and relative health of the subject, the route and form of administration, the judgment of the attending medical or veterinary practitioner, and other factors.
  • aromatic denotes the conventional idea of aromaticity as defined in the literature, in particular in IUPAC.
  • chiral carbon Whenever a chiral carbon is present in a chemical structure, it is intended that all stereoisomers associated with that chiral carbon are encompassed by the structure as pure stereoisomers as well as mixtures thereof.
  • the invention also provides pharmaceutical compositions, methods of using, and methods of preparing the aforementioned compounds.
  • One embodiment of the invention relates to a compound of formula I or II, or a pharmaceutically acceptable salt thereof,
  • a 1 is selected from i) -NR 2 -, and ii) -CHR 3 -;
  • R 1 is selected from i) H, ii) Ci- 6 -alkyl, and iii) C 3-8 -cycloalkyl
  • R 2 is selected from i) H, ii) Ci- 6 -alkyl, and iii) C 3-8 -cycloalkyl; or R 1 and R 2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R 14 , R 15 and R 16 ;
  • R 3 is selected from i) H, ii) Ci- 6 -alkyl, and iii) C 3-8 -cycloalkyl; or R 1 and R 3 together with the carbon atom to which they are attached form a cycloalkyl optionally substituted by R 14 , R 15 and R 16 ;
  • R 14 , R 15 and R 16 are independently selected from i) H, ii) halogen, iii) Ci- 6 -alkyl, and iv) C 3-8 -cycloalkyl;
  • R 7 and R 8 are independently selected from i) H, and ii) halogen;
  • a 2 and A 3 are independently selected from i) -CH-, and ii) -N-;
  • X is selected from i) a bound, ii) -NR 4 -, and iii) -0-;
  • R 4 is selected from i) H, and ii) Ci- 6 -alkyl
  • a 4 is selected from i) -C(O)-, and ii) -CH2-;
  • A is selected from i) -(CFh)p-; and ii) the ring systems A, B, C, D, E and F; p is selected from i) 3, and ii) 5; m is selected from i) 0, ii) 1, iii) 2;
  • B is selected from the ring systems G and H; n is selected from i) 0, and ii) 1;
  • R 5 and R 6 are independently selected from i) H, and ii) Ci- 6 -alkyl; or R 5 and R 6 together form -CH2-.
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein A 1 is selected from i) -NR 2 -, and ii) -CHR 3 -;
  • R 1 is selected from i) Ci- 6 -alkyl, and ii) C 3-8 -cycloalkyl;
  • R 2 is Ci- 6 -alkyl; or R 1 and R 2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R 14 , R 15 and R 16 ;
  • R 3 is Ci- 6 -alkyl
  • R 7 and R 8 are halogen
  • a 2 and A 3 are independently selected from i) -CH-, and ii) -N-;
  • X is selected from i) a bound, ii) -NR 4 -, and iii) -0-;
  • R 4 is H
  • a 4 is selected from i) -C(O)-, and ii) -CH2-;
  • A is selected from i) -(CFh)p-; and ii) the ring systems A, B, C, D, E and F; p is selected from i) 3, and ii) 5; m is selected from i) 0, ii) 1, iii) 2;
  • B is selected from the ring systems G and H; n is selected from i) 0, and ii) 1;
  • R 5 and R 6 are H; or R 5 and R 6 together form -CH2-.
  • E3 A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein the compound is of formula (I).
  • E4 A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein the compound is of formula (II).
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 1 is selected from i) Ci-6-alkyl, and ii) C3-8-cycloalkyl.
  • E6 A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 2 is Ci- 6 -alkyl.
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 1 and R 2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R 14 , R 15 and R 16 .
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 1 and R 2 together with the nitrogen atom to which they are attached form an unsubstituted heterocycloalkyl.
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein the heterocycloalkyl formed by R 1 and R 2 together with the nitrogen atom to which they are attached is a pyrrolidinyl.
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 3 is Ci- 6 -alkyl.
  • El l A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 7 and R 8 are halogen.
  • E12 A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 4 is H.
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 5 and R 6 are H.
  • E14 A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R 5 and R 6 together form -CEh-.
  • El 5 A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, which is selected from the group consisting of
  • E16 A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for use as therapeutically active substance.
  • a certain embodiment of the invention relates to a pharmaceutical composition
  • a pharmaceutical composition comprising the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable auxiliary substance.
  • El 8 A certain embodiment of the invention relates to the use of compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for the therapeutic and/or prophylactic treatment of cancer, in particular melanoma, colorecal cancer and lung cancer.
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for use in the treatment and/or prophilaxyis of cancer, in particular melanoma, colorecal cancer and lung cancer.
  • a certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the therapeutic and/or prophylactic treatment of cancer, in particular melanoma, colorecal cancer and lung cancer.
  • a certain embodiment of the invention relates to a method for the therapeutic and/or prophylactic treatment of cancer, in particular melanoma, colorecal cancer and lung cancer, by administering the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, to a patient in need thereof.
  • the invention includes all optical isomers, i.e. diastereoisomers, diastereomeric mixtures, racemic mixtures, all their corresponding enantiomers and/or tautomers as well as their solvates, wherever applicable, of the compounds of formula I or II.
  • the compounds of formula I or II may contain one or more asymmetric centers and can therefore occur as racemates, racemic mixtures, single enantiomers, diastereomeric mixtures and individual diastereomers. Additional asymmetric centers may be present depending upon the nature of the various substituents on the molecule. Each such asymmetric center will independently produce two optical isomers and it is intended that all of the possible optical isomers and diastereomers in mixtures and as pure or partially purified compounds are included within this invention. The present invention is meant to encompass all such isomeric forms of these compounds. The independent syntheses of these diastereomers or their chromatographic separations may be achieved as known in the art by appropriate modification of the methodology disclosed herein.
  • Their absolute stereochemistry may be determined by the x-ray crystallography of crystalline products or crystalline intermediates which are derivatized, if necessary, with a reagent containing an asymmetric center of known absolute configuration.
  • racemic mixtures of the compounds may be separated so that the individual enantiomers are isolated. The separation can be carried out by methods well known in the art, such as the coupling of a racemic mixture of compounds to an enantiomerically pure compound to form a diastereomeric mixture, followed by separation of the individual diastereomers by standard methods, such as fractional crystallization or chromatography.
  • optically pure enantiomer means that the compound contains > 90 % of the desired isomer by weight, particularly > 95 % of the desired isomer by weight, or more particularly > 99 % of the desired isomer by weight, said weight percent based upon the total weight of the isomer(s) of the compound.
  • Chirally pure or chirally enriched compounds may be prepared by chirally selective synthesis or by separation of enantiomers. The separation of enantiomers may be carried out on the final product or alternatively on a suitable intermediate.
  • Degraders of formula (I) and (II) can be prepared by amide coupling of an CRBN intermediate of formula (III) or (V) with BRAF intermediate of formula (IV) in a solvent such as N,N- dimethylformamide, a base such as Huenig’s Base and a coupling reagent such as HATU.
  • Scheme 2 general scheme B Degraders of formula (I) or (II) can be prepared by treatment of CRBN intermediate of formula (VI) or (VII) with triphosgene in a solvent such as dichloromethane and a base such as Huenig’s Base. The carbamoyl intermediate is trapped in situ with an BRAF intermediate of formula (IV) in a solvent such as dichloromethane or N,N-dimethylformamide and a base such as Huenig’s Base.
  • CRBN intermediates of formula (VI) and (VII) can be prepared by thermal condensation of a fluoro-derivative of formula (VIII) with amino-acids of formula (IX) or (X) in a solvent such as DMSO or NMP and a base such as Huenig’s Base or triethylamine.
  • Amino-acids of formula xxx and xxx are either commercially available or can be prepared by methods known in the art
  • CRBN intermediates of formula (VI) or (VII) can be obtained by alkylation of an compound of formula (XI) with an alkyl halogenide such as tert-butyl bromoacetate in a solvent such as N,N- dimethylformamide and a base such as Huenig’s Base.
  • an alkyl halogenide such as tert-butyl bromoacetate
  • a solvent such as N,N- dimethylformamide
  • a base such as Huenig’s Base.
  • CRBN intermediates of formula (VI) or (VII) can be prepared by thermal condensation of an alkylated phenol derivative of formula (XII) with amino-glutarimide in a solvent such as acetonitrile and a base such as potassium carbonate.
  • Phenol derivatives of formula (XII) are either commercially available or can be prepared by methods known in the art.
  • Isolation and purification of the compounds Isolation and purification of the compounds and intermediates described herein can be effected, if desired, by any suitable separation or purification procedure such as, for example, filtration, extraction, crystallization, column chromatography, thin-layer chromatography, thick-layer chromatography, preparative low or high-pressure liquid chromatography or a combination of these procedures.
  • suitable separation and isolation procedures can be had by reference to the preparations and examples herein below. However, other equivalent separation or isolation procedures could, of course, also be used.
  • Racemic mixtures of chiral compounds of formula I or II can be separated using chiral HPLC.
  • Racemic mixtures of chiral synthetic intermediates may also be separated using chiral HPLC.
  • the compounds of formula I or II may be converted to a corresponding acid addition salt.
  • the conversion is accomplished by treatment with at least a stoichiometric amount of an appropriate acid, such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and the like, and organic acids such as acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid and the like.
  • an appropriate acid such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and the like
  • organic acids such as acetic acid, propionic acid, glycolic acid,
  • a specific salt is the fumarate.
  • the free base is dissolved in an inert organic solvent such as diethyl ether, ethyl acetate, chloroform, ethanol or methanol and the like, and the acid added in a similar solvent.
  • the temperature is maintained between 0 °C and 50 °C.
  • the resulting salt precipitates spontaneously or may be brought out of solution with a less polar solvent.
  • the compounds of general formula I or II in this invention may be derivatised at functional groups to provide derivatives which are capable of conversion back to the parent compound in vivo.
  • DMEM no-phenol red medium supplemented with L-glutamine was purchased from (Coming).
  • Fetal bovine serum (FBS) was purchased from Gibco (Grand Island, NY, USA).
  • Nano- Glo® HiBiT Lytic Assay Buffer & Reagents were purchased from Promega (Madison, WI, USA).
  • A375 (harboring BRAF homozygous V600E mutation) was purchased from ATCC.
  • A375.10 cell line was generated from A375 cell line from ATCC by knocking-in a HiBiT tag at the N-terminal of BRAF V600E protein via CRISPR technology.
  • Cell culture flasks and 384-well black flat-bottom polystyrene TC-treated microplates were acquired from Corning (Corning, NY, USA).
  • the A375.10 cell line Prior to the assay, the A375.10 cell line is maintained in DMEM no-phenol red medium supplemented with 10% fetal bovine serum (FBS). Following compound treatment, BRAF V600E degradation was determined based on quantification of HiBiT luminescence signal by lysing the cells followed by addition of Nano-Glo® HiBiT Lytic Assay Reagents. The luminescence signal detected correlates with the total BRAF V600E protein level in cells. Briefly, test compounds were added to the 384-well plate from a top concentration of 10 mM with 11 half log dilutions of compound, plated in duplicate.
  • FBS fetal bovine serum
  • Quantification of luminescence responses measured in the presence of compound were normalized to a high signal/no degradation control (untreated cells + lytic detection reagent) and a low signal/full degradation control (untreated cells, no lytic detection reagent). Data were analyzed with a 4-parameter logistic fit to generate sigmoidal dose-response curves.
  • the DC50 is the concentration of compound at which exactly 50% of the total cellular BRAF V600E has been degraded.
  • the Emax, or maximum effect of each compound represents the amount of residual protein remaining in the cell following compound treatment.
  • the compounds of formula I or II and the pharmaceutically acceptable salts can be used as therapeutically active substances, e.g. in the form of pharmaceutical preparations.
  • the pharmaceutical preparations can be administered orally, e.g. in the form of tablets, coated tablets, dragees, hard and soft gelatin capsules, solutions, emulsions or suspensions.
  • the administration can, however, also be effected rectally, e.g. in the form of suppositories, or parenterally, e.g. in the form of injection solutions.
  • the compounds of formula I or II and the pharmaceutically acceptable salts thereof can be processed with pharmaceutically inert, inorganic or organic carriers for the production of pharmaceutical preparations.
  • Lactose, com starch or derivatives thereof, talc, stearic acids or its salts and the like can be used, for example, as such carriers for tablets, coated tablets, dragees and hard gelatin capsules.
  • Suitable carriers for soft gelatin capsules are, for example, vegetable oils, waxes, fats, semi-solid and liquid polyols and the like. Depending on the nature of the active substance no carriers are however usually required in the case of soft gelatin capsules.
  • Suitable carriers for the production of solutions and syrups are, for example, water, polyols, glycerol, vegetable oil and the like.
  • Suitable carriers for suppositories are, for example, natural or hardened oils, waxes, fats, semi-liquid or liquid polyols and the like.
  • the pharmaceutical preparations can, moreover, contain pharmaceutically acceptable auxiliary substances such as preservatives, solubilizers, stabilizers, wetting agents, emulsifiers, sweeteners, colorants, flavorants, salts for varying the osmotic pressure, buffers, masking agents or antioxidants. They can also contain still other therapeutically valuable substances.
  • pharmaceutically acceptable auxiliary substances such as preservatives, solubilizers, stabilizers, wetting agents, emulsifiers, sweeteners, colorants, flavorants, salts for varying the osmotic pressure, buffers, masking agents or antioxidants. They can also contain still other therapeutically valuable substances.
  • Medicaments containing a compound of formula I or II or a pharmaceutically acceptable salt thereof and a therapeutically inert carrier are also provided by the present invention, as is a process for their production, which comprises bringing one or more compounds of formula I or II and/or pharmaceutically acceptable salts thereof and, if desired, one or more other therapeutically valuable substances into a galenical administration form together with one or more therapeutically inert carriers.
  • the dosage can vary within wide limits and will, of course, have to be adjusted to the individual requirements in each particular case.
  • the dosage for adults can vary from about 0.01 mg to about 1000 mg per day of a compound of general formula I or II or of the corresponding amount of a pharmaceutically acceptable salt thereof.
  • the daily dosage may be administered as single dose or in divided doses and, in addition, the upper limit can also be exceeded when this is found to be indicated.
  • the following examples illustrate the present invention without limiting it, but serve merely as representative thereof.
  • the pharmaceutical preparations conveniently contain about 1-500 mg, particularly 1-100 mg, of a compound of formula I or II. Examples of compositions according to the invention are:
  • Example A Tablets of the following composition are manufactured in the usual manner:
  • Example B-l Capsules of the following composition are manufactured:
  • the compound of formula I or II, lactose and corn starch are firstly mixed in a mixer and then in a comminuting machine.
  • the mixture is returned to the mixer; the talc is added thereto and mixed thoroughly.
  • the mixture is filled by machine into suitable capsules, e.g. hard gelatin capsules.
  • the compound of formula I or II is dissolved in a warm melting of the other ingredients and the mixture is filled into soft gelatin capsules of appropriate size.
  • the filled soft gelatin capsules are treated according to the usual procedures.
  • Table 6 possible suppository composition Manufacturing Procedure The suppository mass is melted in a glass or steel vessel, mixed thoroughly and cooled to
  • the compound of formula I or II is dissolved in a mixture of Polyethylene Glycol 400 and water for injection (part).
  • the pH is adjusted to 5.0 by acetic acid.
  • the volume is adjusted to 1.0 ml by addition of the residual amount of water.
  • the solution is filtered, filled into vials using an appropriate overage and sterilized.
  • the compound of formula I or II is mixed with lactose, microcrystalline cellulose and sodium carboxymethyl cellulose and granulated with a mixture of polyvinylpyrrolidone in water.
  • the granulate is mixed with magnesium stearate and the flavoring additives and filled into sachets.
  • the title compound was obtained as brown solid in 47 % with a purity of 77% by UV, according to the general procedure V from (3-(3-amino-2,6-difluorobenzoyl)-5-bromo-lH-pyrrolo[2,3- b]pyri din- l-yl)(2, 6-di chi orophenyl)methanone and (R)-3-fluoropyrrolidine-l-sulfamoyl chloride. MS m/e: 675, 677 ([M+H+] + ).
  • N-BOC deprotection a) To a mixture of an appropriately selected sulfamoyl intermediate (1 eq) or sulfonamide intermediate (1 eq), a boronic acid which is either commercially available or prepared by methods known in the art (1.5 eq) and potassium carbonate (3 eq) in 1, 2-dimethoxy ethane / water (4:1, 0.1- 0.2 M), which has been purged with argon, are consecutively added triphenylphosphine (0.1 eq) and palladium(II)acetate (0.05 eq). The mixture is stirred at reflux for 3-20 h.
  • the free base can be obtained by partitioning the hydrochloride or trifluoroacetic acid salt between 1 M aqueous sodium carbonate solution and an organic solvent, e.g. ethyl acetate or dichloromethane. The layers are separated and the aqueous layer is extracted with two portions of the organic solvent. The combined organic layers are dried over anhydrous sodium sulfate, filtered and concentrated in vacuo to give the free base of the desired BRAF intermediate.
  • an organic solvent e.g. ethyl acetate or dichloromethane.
  • the layers are separated and the aqueous layer is extracted with two portions of the organic solvent.
  • the combined organic layers are dried over anhydrous sodium sulfate, filtered and concentrated in vacuo to give the free base of the desired BRAF intermediate.
  • N- methylcyclopropanamine 222.07 mg, 3.12 mmol, 1.5 eq
  • the reaction mixture was concentrated under reduced pressure to give a residue.
  • the residue was purified by column on silica and concentrated under reduced pressure to give a mixture (1.3 g) as a yellow solid.
  • the reaction mixture was heated to 23 °C and stirred for 20 h under argon.
  • the crude reaction mixture was concentrated in vacuo, then diluted with AcOEt (10 ml) and 5 ml water, applicated over Chem Elut Cartridge (lOg), eluted with AcOEt (100 ml).
  • the crude reaction mixture was concentrated in vacuo and dried under vacuo over night.
  • a white solid (716 mg; yield 99%; UV purity 83%) was used without further purification for the next step.
  • XPHOS PD G2 (66.5 mg, 84.5 pmol, Eq: 0.2) and XPHOS (40.3 mg, 84.5 pmol, Eq: 0.2) were added.
  • the reaction mixture was heated to 130 °C and stirred for 2 h.
  • the reaction mixture was diluted with AcOEt (10 ml) and water (5 ml), applicated over Chem Elut Cartridge (lOg), eluted with AcOEt (100 ml) and concentrated in vacuo.
  • the crude material was purified by flash chromatography to give brown residue (220 mg; yield 74%; UV purity 68%).
  • the reaction mixture was partitioned between ethyl acetate (30 ml) and 0.1 M aqueous hydrogen chloride solution (30 ml). The layers were separated. The aqueous layer was extracted with two 30-ml portions of ethyl acetate. The combined organic layers were washed with one 30-ml portion of 0.1 M aqueous hydrogen chloride solution and one 20-ml portion of brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo. The residue was triturated in ethyl acetate (5-ml).
  • methyl 3-hydroxy-2-methylbenzoate (2.0 g, 12.04 mmol, 1 eq) was dissolved in DMF (10 mL) and K 2 CO 3 (3.32 g, 24.07 mmol, 2 eq) were added to the stirred solution. Then t-butyl 4-bromobutanoate (3.22 g, 14.44 mmol, 1.2 eq) was added dropwise. The resulting mixture was stirred at 60 °C for 12 h.
  • a coupling reagent such as HATU (l-[bis(dimethylamino)methylene]-lH-l,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate; 1 eq).
  • HATU l-[bis(dimethylamino)methylene]-lH-l,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate
  • the reaction mixture is stirred at room temperature for 30 minutes.
  • An appropriately selected BRAF intermediate is added and stirring is continued for 1-24 h.
  • the reaction mixture is partitioned between an organic solvent such as ethyl acetate or dichloromethane/methanol (19:1) and 1M sodium bicarbonate solution.
  • the layers are separated.
  • the aqueous layer is extracted with one or two portions of organic solvent.
  • the combined organic layers are washed with one portion of brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo. Purification by flash-chromatography with dichloromethane / methanol or by preparative HPLC give the desired degrader.
  • Example 2 5-[4-[[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-py rrol o [2, 3 -b ] pyri dine
  • general procedure III starting from 3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]piperidin-4-yl]propanoic acid (CRBN Intermediate 3) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro
  • Example 12 5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]oxypiperidine-l- carbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l /-pyrrolo[2,3-b]pyridine
  • general procedure IV starting from 2-(2,6-Dioxo-3-piperidyl)-5- (4piperidyloxy)isoindoline-l,3-dione (CRBN Intermediate 6) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH
  • Example 17 5-[6-[4-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]pyrrolidin-3- yl]acetyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l//-pyrrolo[2,3-b]pyridine
  • general procedure III starting from 2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]pyrrolidin-3-yl]acetic acid (CRBN Intermediate 2) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-

Abstract

Present invention provides compounds that cause specifically the degradation of BRAF. The present compounds are useful for the treatment of various cancers.

Description

HETEROBIFUNCTIONAL COMPOUNDS AS DEGRADERS OF BRAF
Field of the Invention
Present invention provides compounds that cause specifically the degradation of BRAF, via the ubiquitination of the BRAF protein and subsequent proteasomal degradation. The present compounds are useful for the treatment of various cancers.
Background of the Invention
BRAF V600E/K mutations are often observed in a variety of human tumors including Melanoma, Tyroid cancer, Colorectal cancer, Lung Cancer and others. Despite the evident therapeutic benefits exerted by available BRAF inhibitors in the clinic in many of these indications, the duration of the antitumor response to these drugs is limited by the acquisition of drug resistance.
The BRAF protein presents a peculiar mechanism for signaling propagation that require protein homo (BRAF -BRAF) or hetero-dimerization with other RAF proteins (BRAF -RAF 1 or BRAF-ARAF). When BRAF is mutated, as observed in oncological indications with BRAF V600E/K substitution, BRAF signaling become independent from the generation of homo and/or heterodimers. In this context, the kinase became hyperactivated as monomeric protein and drive cellular proliferative signals.
Because currently available inhibitors only block BRAF activity in its monomeric form while are inffective on BRAF homo or heterodimer, it is not surprising that many BRAFi- resistance inducing mechanisms act by restoring RAF homo and heterodimerisation mediated signaling.
Targeted protein degradation is an emerging mode of action, which induce target ubiquitination by recruiting a specific E3 ligase thus promoting proteasome-mediated disruption of the engaged target.
The degradation of BRAF trough targeted degradation offers evident advantage over conventional inhibition since allows eliminating scaffolding activities of BRAF V600E/K and particularly, by inducing BRAF protein extinction, it can prevent and exert activity on dimerization-mediated mechanisms of resistance.
In agreement with these evidences, literature reports demonstrated that BRAF protein abrogation could represent a strategy to delay the onset of resistance acquisition as well potentially targeting tumors that acquired resistance to available inhibitors offering novel therapeutic opportunities in the treatment of BRAF V600E/K mutated tumors like melanoma, colorecal cancer, lung cancer.
Summary of the Invention
Present invention provides compounds that cause specifically the degradation of BRAF presenting the mutation V600E via the targeted ubiquitination of the BRAF protein and subsequent proteasomal degradation. The present compounds bind to the ubiquitously expressed E3 ligase protein cereblon (CRBN) on one hand and alter the substrate specificity of the CRBN E3 ubiquitin ligase complex, resulting in the recruitment and ubiquitination of BRAF V600E. The present compounds are also effective binders of WT BRAF, RAFl and ARAF, however effective targeted degradation is triggered by these compounds only for BRAF V600E.
Present invention provides compounds of formula I or II, or a pharmaceutically acceptable salt thereof,
Figure imgf000003_0001
wherein the substituents and variables are as described below and in the claims, or a pharmaceutically acceptable salt thereof. The present compounds are useful for the therapeutic and/or prophylactic treatment of cancer.
Detailed Description of the Invention
The present invention provides a compound of formula I or II and their pharmaceutically acceptable salts thereof, the preparation of the above mentioned compounds, medicaments containing them and their manufacture as well as the use of the above mentioned compounds in the therapeutic and/or prophylactic treatment of cancer.
The following definitions of the general terms used in the present description apply irrespectively of whether the terms in question appear alone or in combination with other groups.
Unless otherwise stated, the following terms used in this application, including the specification and claims, have the definitions given below. It must be noted that, as used in the specification and the appended claims, the singular forms “a”, “an,” and “the” include plural referents unless the context clearly dictates otherwise.
The term "Ci-6-alkyl", alone or in combination with other groups, stands for a hydrocarbon radical which may be linear or branched, with single or multiple branching, wherein the alkyl group in general comprises 1 to 6 carbon atoms, for example, methyl (Me), ethyl (Et), propyl, isopropyl (i-propyl), n-butyl, i-butyl (isobutyl), 2-butyl (sec-butyl), t-butyl (/tvV-butyl), isopentyl, 2-ethyl-propyl (2 -methyl -propyl), 1,2-dimethyl -propyl and the like. Specific groups are methyl and ethyl.
The term “C3-8-cycloalkyl” denotes a monovalent saturated monocyclic or bicyclic hydrocarbon group of 3 to 8 ring carbon atoms. Bicyclic means a ring system consisting of two saturated carbocycles having one or two carbon atoms in common. Examples of monocyclic C3-8- cycloalkyl are cyclopropyl, cyclobutanyl, cyclopentyl, cyclohexyl or cycloheptyl. Example of bicyclic C3-8-cycloalkyl is spiro[3.3]heptanyl. Particular monocyclic C3-8-cycloalkyl groups are cyclopropyl, cyclobutanyl. More particular monocyclic C3-8-cycloalkyl group is cyclopropyl.
The term "halogen", alone or in combination with other groups, denotes chloro (Cl), iodo (I), fluoro (F) and bromo (Br). Specific group is F.
The term “heterocycloalkyl” denotes a monovalent saturated or partly unsaturated mono- or bicyclic ring system of 4 to 9 ring atoms, comprising 1, 2, or 3 ring heteroatoms selected from N, O and S, the remaining ring atoms being carbon which is optionally substituted with oxo. Bicyclic means consisting of two cycles having one or two ring atoms in common. The heterocycloalkyl is preferably a monovalent saturated or partly unsaturated monocyclic ring system of 4 to 6 ring atoms, comprising 1 or 2 ring heteroatoms selected from N, O and S (4- to 6- membered heterocycloalkyl). Examples for monocyclic saturated heterocycloalkyl are 4,5-dihydro-oxazolyl, oxetanyl, azetidinyl, pyrrolidinyl, 2-oxo-pyrrolidin-4-yl, 3-oxo- morpholin-6-yl, tetrahydrofuranyl, tetrahydrothiophenyl, pyrazolidinyl, imidazolidinyl, oxazolidinyl, isoxazolidinyl, thiazolidinyl, piperidinyl, tetrahydropyranyl, tetrahydrothiopyranyl, piperazinyl, morpholinyl, thiomorpholinyl, l,l-dioxo-thiomorpholin-4-yl, azepanyl, diazepanyl, homopiperazinyl, or oxazepanyl. Examples for bicyclic saturated heterocycloalkyl are oxabicyclo[2.2.1]heptanyl, oxaspiro[3.3]heptanyl, 8-aza-bicyclo[3.2.1]octyl, quinuclidinyl, 8- oxa-3-aza-bicyclo[3.2.1]octyl, 9-aza-bicyclo[3.3.1]nonyl, 3-oxa-9-aza-bicyclo[3.3.1]nonyl, or 3- thia-9-aza-bicyclo[3.3.1]nonyl. Examples for partly unsaturated heterocycloalkyl are dihydrofuryl, imidazolinyl, dihydro-oxazolyl, tetrahydro-pyridinyl or dihydropyranyl. Heterocyclyl is preferably azetidinyl, morpholinyl, pyrrolidinyl, piperazinyl, oxetanyl, 2-oxo- pyrrolidin-4-yl, or 3-oxo- morpholin-6-yl. Particular heterocycloalkyl is pyrrolidinyl.
The term “pharmaceutically acceptable” denotes an attribute of a material which is useful in preparing a pharmaceutical composition that is generally safe, non-toxic, and neither biologically nor otherwise undesirable and is acceptable for veterinary as well as human pharmaceutical use.
The term "a pharmaceutically acceptable salt" refers to a salt that is suitable for use in contact with the tissues of humans and animals. Examples of suitable salts with inorganic and organic acids are, but are not limited to acetic acid, citric acid, formic acid, fumaric acid, hydrochloric acid, lactic acid, maleic acid, malic acid, methane-sulfonic acid, nitric acid, phosphoric acid, p- toluenesulphonic acid, succinic acid, sulfuric acid (sulphuric acid), tartaric acid, trifluoroacetic acid and the like. Particular acids are formic acid, trifluoroacetic acid and hydrochloric acid.
The terms “pharmaceutically acceptable auxiliary substance” refer to carriers and auxiliary substances such as diluents or excipients that are compatible with the other ingredients of the formulation.
The term "pharmaceutical composition" encompasses a product comprising specified ingredients in pre-determined amounts or proportions, as well as any product that results, directly or indirectly, from combining specified ingredients in specified amounts. Particularly it encompasses a product comprising one or more active ingredients, and an optional carrier comprising inert ingredients, as well as any product that results, directly or indirectly, from combination, complexation or aggregation of any two or more of the ingredients, or from dissociation of one or more of the ingredients, or from other types of reactions or interactions of one or more of the ingredients. “Therapeutically effective amount” means an amount of a compound that, when administered to a subject for treating a disease state, is sufficient to effect such treatment for the disease state. The “therapeutically effective amount” will vary depending on the compound, disease state being treated, the severity or the disease treated, the age and relative health of the subject, the route and form of administration, the judgment of the attending medical or veterinary practitioner, and other factors.
The term “as defined herein” and “as described herein” when referring to a variable incorporates by reference the broad definition of the variable as well as particularly, more particularly and most particularly definitions, if any.
The terms “treating”, “contacting” and “reacting” when referring to a chemical reaction means adding or mixing two or more reagents under appropriate conditions to produce the indicated and/or the desired product. It should be appreciated that the reaction which produces the indicated and/or the desired product may not necessarily result directly from the combination of two reagents which were initially added, i.e., there may be one or more intermediates which are produced in the mixture which ultimately leads to the formation of the indicated and/or the desired product.
The term “pharmaceutically acceptable excipient” denotes any ingredient having no therapeutic activity and being non-toxic such as disintegrators, binders, fillers, solvents, buffers, tonicity agents, stabilizers, antioxidants, surfactants or lubricants used in formulating pharmaceutical products.
The term "pharmaceutical composition" encompasses a product comprising specified ingredients in pre-determined amounts or proportions, as well as any product that results, directly or indirectly, from combining specified ingredients in specified amounts. Particularly it encompasses a product comprising one or more active ingredients, and an optional carrier comprising inert ingredients, as well as any product that results, directly or indirectly, from combination, complexation or aggregation of any two or more of the ingredients, or from dissociation of one or more of the ingredients, or from other types of reactions or interactions of one or more of the ingredients.
The term “inhibitor” denotes a compound which competes with, reduces or prevents the binding of a particular ligand to particular receptor or which reduces or prevents the function of a particular protein.
“Therapeutically effective amount” means an amount of a compound that, when administered to a subject for treating a disease state, is sufficient to effect such treatment for the disease state. The “therapeutically effective amount” will vary depending on the compound, disease state being treated, the severity or the disease treated, the age and relative health of the subject, the route and form of administration, the judgment of the attending medical or veterinary practitioner, and other factors. The term “aromatic” denotes the conventional idea of aromaticity as defined in the literature, in particular in IUPAC.
Whenever a chiral carbon is present in a chemical structure, it is intended that all stereoisomers associated with that chiral carbon are encompassed by the structure as pure stereoisomers as well as mixtures thereof. The invention also provides pharmaceutical compositions, methods of using, and methods of preparing the aforementioned compounds.
All separate embodiments may be combined.
El: One embodiment of the invention relates to a compound of formula I or II, or a pharmaceutically acceptable salt thereof,
Figure imgf000007_0001
Figure imgf000008_0001
A1 is selected from i) -NR2-, and ii) -CHR3-;
R1 is selected from i) H, ii) Ci-6-alkyl, and iii) C3-8-cycloalkyl; R2 is selected from i) H, ii) Ci-6-alkyl, and iii) C3-8-cycloalkyl; or R1 and R2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R14, R15 and R16;
R3 is selected from i) H, ii) Ci-6-alkyl, and iii) C3-8-cycloalkyl; or R1 and R3 together with the carbon atom to which they are attached form a cycloalkyl optionally substituted by R14, R15 and R16;
R14, R15 and R16 are independently selected from i) H, ii) halogen, iii) Ci-6-alkyl, and iv) C3-8-cycloalkyl;
R7 and R8 are independently selected from i) H, and ii) halogen;
A2 and A3 are independently selected from i) -CH-, and ii) -N-;
X is selected from i) a bound, ii) -NR4-, and iii) -0-;
R4 is selected from i) H, and ii) Ci-6-alkyl;
A4 is selected from i) -C(O)-, and ii) -CH2-;
A is selected from i) -(CFh)p-; and ii) the ring systems A, B, C, D, E and F;
Figure imgf000010_0001
p is selected from i) 3, and ii) 5; m is selected from i) 0, ii) 1, iii) 2;
B is selected from the ring systems G and H;
Figure imgf000010_0002
n is selected from i) 0, and ii) 1;
R5 and R6 are independently selected from i) H, and ii) Ci-6-alkyl; or R5 and R6 together form -CH2-.
E2: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein A1 is selected from i) -NR2-, and ii) -CHR3-;
R1 is selected from i) Ci-6-alkyl, and ii) C3-8-cycloalkyl;
R2 is Ci-6-alkyl; or R1 and R2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R14, R15 and R16;
R3 is Ci-6-alkyl;
R7 and R8 are halogen;
A2 and A3 are independently selected from i) -CH-, and ii) -N-;
X is selected from i) a bound, ii) -NR4-, and iii) -0-;
R4 is H;
A4 is selected from i) -C(O)-, and ii) -CH2-;
A is selected from i) -(CFh)p-; and ii) the ring systems A, B, C, D, E and F;
Figure imgf000012_0001
p is selected from i) 3, and ii) 5; m is selected from i) 0, ii) 1, iii) 2;
B is selected from the ring systems G and H;
Figure imgf000012_0002
n is selected from i) 0, and ii) 1;
R5 and R6 are H; or R5 and R6 together form -CH2-.
E3 : A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein the compound is of formula (I). E4: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein the compound is of formula (II).
E5: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R1 is selected from i) Ci-6-alkyl, and ii) C3-8-cycloalkyl.
E6: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R2 is Ci-6-alkyl.
E7: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R1 and R2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R14, R15 and R16.
E8: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R1 and R2 together with the nitrogen atom to which they are attached form an unsubstituted heterocycloalkyl.
E9: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein the heterocycloalkyl formed by R1 and R2 together with the nitrogen atom to which they are attached is a pyrrolidinyl.
E10: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R3 is Ci-6-alkyl.
El l: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R7 and R8 are halogen.
E12: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R4 is H.
E13: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R5 and R6 are H.
E14: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, wherein R5 and R6 together form -CEh-. El 5: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, which is selected from the group consisting of
5-[4-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]butanoyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]acetyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-
2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
3 -[3 -[[ethyl (methyl )sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[rac-( l R,5S)-8-[4-
[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]-3,8- diazabicyclo[3.2.1]octan-3-yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]butanoyl]piperazin-l-yl]methyl]-3-pyridyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[2-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]pyrimidin-5-yl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[2-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]butanoyl]piperazin-l-yl]pyrimidin-5-yl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
N-[3-[5-[4-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]butanoyl]piperazin-l-yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine-3- carbonyl]-2,4-difluoro-phenyl]pyrrolidine-l -sulfonamide formic acid;
3-[3-[[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-[4-[[2- (2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin-l- yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine formic acid; 5-[6-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-
2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]butanoyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-
2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]oxypiperidine-l- carbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine;
5-[6-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclohexanecarbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]methyl]-3-pyridyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]pyrrolidin-3- yl]acetyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine;
5-[6-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]azetidin-3- yl]propanoyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine;
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l- yl]-3 -pyri dyl]-3 -[3 -[[ethyl (methyl )sulfamoyl]ami no] -2,6-difluoro-benzoyl]-l H- pyrrolo[2,3 -bjpyridine; 5-[6-[4-[2-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]oxy-l- piperidyl]acetyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine;
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]piperidine-l- carbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine;
N-[3-[5-[6-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]-3-pyridyl]-lH-pyrrolo[2,3-b]pyridine-3- carbonyl]-2,4-difluoro-phenyl]butane-2-sulfonamide;
5-[2-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l- yljpyri mi din-5-yl]-3 -[3 -[[ethyl (methyl )sulfamoyl]ami no] -2,6-difluoro-benzoyl]-l H- pyrrolo[2,3 -bjpyridine;
5-[4-[[4-[l-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]acetyl]-4-piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[l-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]piperidine-4- carbonyl]-4-piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[l-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]-4- piperidyl]acetyl]-4-piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine;
5-[4-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l- yl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH- pyrrolo[2, 3 -bjpyridine; and 5-[4-[[4-[l-[6-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]hexanoyl]- 4-piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine .
E16: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for use as therapeutically active substance.
El 7: A certain embodiment of the invention relates to a pharmaceutical composition comprising the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable auxiliary substance.
El 8: A certain embodiment of the invention relates to the use of compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for the therapeutic and/or prophylactic treatment of cancer, in particular melanoma, colorecal cancer and lung cancer.
E19: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for use in the treatment and/or prophilaxyis of cancer, in particular melanoma, colorecal cancer and lung cancer.
E20: A certain embodiment of the invention relates to the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for the therapeutic and/or prophylactic treatment of cancer, in particular melanoma, colorecal cancer and lung cancer.
E21 : A certain embodiment of the invention relates to a method for the therapeutic and/or prophylactic treatment of cancer, in particular melanoma, colorecal cancer and lung cancer, by administering the compound of formula I or II as described herein, or a pharmaceutically acceptable salt thereof, to a patient in need thereof.
E22: The invention includes all substituents in its corresponding deuterated form, wherever applicable, of the compounds of formula I or II.
E23: The invention includes all optical isomers, i.e. diastereoisomers, diastereomeric mixtures, racemic mixtures, all their corresponding enantiomers and/or tautomers as well as their solvates, wherever applicable, of the compounds of formula I or II.
The compounds of formula I or II may contain one or more asymmetric centers and can therefore occur as racemates, racemic mixtures, single enantiomers, diastereomeric mixtures and individual diastereomers. Additional asymmetric centers may be present depending upon the nature of the various substituents on the molecule. Each such asymmetric center will independently produce two optical isomers and it is intended that all of the possible optical isomers and diastereomers in mixtures and as pure or partially purified compounds are included within this invention. The present invention is meant to encompass all such isomeric forms of these compounds. The independent syntheses of these diastereomers or their chromatographic separations may be achieved as known in the art by appropriate modification of the methodology disclosed herein. Their absolute stereochemistry may be determined by the x-ray crystallography of crystalline products or crystalline intermediates which are derivatized, if necessary, with a reagent containing an asymmetric center of known absolute configuration. If desired, racemic mixtures of the compounds may be separated so that the individual enantiomers are isolated. The separation can be carried out by methods well known in the art, such as the coupling of a racemic mixture of compounds to an enantiomerically pure compound to form a diastereomeric mixture, followed by separation of the individual diastereomers by standard methods, such as fractional crystallization or chromatography.
In the embodiments, where optically pure enantiomers are provided, optically pure enantiomer means that the compound contains > 90 % of the desired isomer by weight, particularly > 95 % of the desired isomer by weight, or more particularly > 99 % of the desired isomer by weight, said weight percent based upon the total weight of the isomer(s) of the compound. Chirally pure or chirally enriched compounds may be prepared by chirally selective synthesis or by separation of enantiomers. The separation of enantiomers may be carried out on the final product or alternatively on a suitable intermediate.
Compounds of formula (I) and (II) can be prepared according to the following processes. As described in the following general schemes 1 to 6 and using method known to the person silled in the art.
Scheme 1 : general scheme A
Degraders of formula (I) and (II) can be prepared by amide coupling of an CRBN intermediate of formula (III) or (V) with BRAF intermediate of formula (IV) in a solvent such as N,N- dimethylformamide, a base such as Huenig’s Base and a coupling reagent such as HATU.
Figure imgf000019_0001
Scheme 2: general scheme B Degraders of formula (I) or (II) can be prepared by treatment of CRBN intermediate of formula (VI) or (VII) with triphosgene in a solvent such as dichloromethane and a base such as Huenig’s Base. The carbamoyl intermediate is trapped in situ with an BRAF intermediate of formula (IV) in a solvent such as dichloromethane or N,N-dimethylformamide and a base such as Huenig’s Base.
Figure imgf000020_0001
Scheme 3 : general scheme C
CRBN intermediates of formula (VI) and (VII) can be prepared by thermal condensation of a fluoro-derivative of formula (VIII) with amino-acids of formula (IX) or (X) in a solvent such as DMSO or NMP and a base such as Huenig’s Base or triethylamine. Amino-acids of formula xxx and xxx are either commercially available or can be prepared by methods known in the art
Figure imgf000021_0001
(VI) or (VII) Scheme 4: general scheme D
CRBN intermediates of formula (VI) or (VII) can be obtained by alkylation of an compound of formula (XI) with an alkyl halogenide such as tert-butyl bromoacetate in a solvent such as N,N- dimethylformamide and a base such as Huenig’s Base.
Figure imgf000021_0002
Scheme 5: general scheme E
CRBN intermediates of formula (VI) or (VII) can be prepared by thermal condensation of an alkylated phenol derivative of formula (XII) with amino-glutarimide in a solvent such as acetonitrile and a base such as potassium carbonate. Phenol derivatives of formula (XII) are either commercially available or can be prepared by methods known in the art.
Figure imgf000022_0001
Scheme 6: general scheme F
Treatment of a protected intermediate of formula (XIII) with a sulfamoyl- or sulfonyl-chloride intermediate of formula (XIV) in a solvent such as pyridine at 80 °C gives rise to Bromo intermediates of formula (XV). Cross coupling of an intermediate of formula (XV) with a boronic acid ester of formula xxx in the presence of a palladium catalyst, e.g. formed in situ from palladium acetate and triphenylphosphine, and an inorganic base such as potassium carbonate gives an intermediate of formula (IV). ROUTE 1
(XIV)
Figure imgf000022_0002
Generally speaking, the sequence of steps used to synthesize the compounds of formula I or
II can also be modified in certain cases.
Isolation and purification of the compounds Isolation and purification of the compounds and intermediates described herein can be effected, if desired, by any suitable separation or purification procedure such as, for example, filtration, extraction, crystallization, column chromatography, thin-layer chromatography, thick-layer chromatography, preparative low or high-pressure liquid chromatography or a combination of these procedures. Specific illustrations of suitable separation and isolation procedures can be had by reference to the preparations and examples herein below. However, other equivalent separation or isolation procedures could, of course, also be used. Racemic mixtures of chiral compounds of formula I or II can be separated using chiral HPLC. Racemic mixtures of chiral synthetic intermediates may also be separated using chiral HPLC.
Salts of compounds of formula
Figure imgf000023_0001
In cases where the compounds of formula I or II are basic they may be converted to a corresponding acid addition salt. The conversion is accomplished by treatment with at least a stoichiometric amount of an appropriate acid, such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and the like, and organic acids such as acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, malic acid, malonic acid, succinic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid and the like. A specific salt is the fumarate. Typically, the free base is dissolved in an inert organic solvent such as diethyl ether, ethyl acetate, chloroform, ethanol or methanol and the like, and the acid added in a similar solvent. The temperature is maintained between 0 °C and 50 °C. The resulting salt precipitates spontaneously or may be brought out of solution with a less polar solvent.
Insofar as their preparation is not described in the examples, the compounds of formula I or II as well as all intermediate products can be prepared according to analogous methods or according to the methods set forth herein. Starting materials are commercially available, known in the art or can be prepared by methods known in the art or in analogy thereto.
It will be appreciated that the compounds of general formula I or II in this invention may be derivatised at functional groups to provide derivatives which are capable of conversion back to the parent compound in vivo.
Pharmacological Tests
The compounds of formula I or II and their pharmaceutically acceptable salts possess valuable pharmacological properties. The compounds were investigated in accordance with the test given hereinafter.
Materials DMEM no-phenol red medium supplemented with L-glutamine was purchased from (Coming). Fetal bovine serum (FBS) was purchased from Gibco (Grand Island, NY, USA). Nano- Glo® HiBiT Lytic Assay Buffer & Reagents were purchased from Promega (Madison, WI, USA). A375 (harboring BRAF homozygous V600E mutation) was purchased from ATCC. A375.10 cell line was generated from A375 cell line from ATCC by knocking-in a HiBiT tag at the N-terminal of BRAFV600E protein via CRISPR technology. Cell culture flasks and 384-well black flat-bottom polystyrene TC-treated microplates were acquired from Corning (Corning, NY, USA).
HiBiT Cellular BRAFV600E Degradation Assay
Prior to the assay, the A375.10 cell line is maintained in DMEM no-phenol red medium supplemented with 10% fetal bovine serum (FBS). Following compound treatment, BRAFV600E degradation was determined based on quantification of HiBiT luminescence signal by lysing the cells followed by addition of Nano-Glo® HiBiT Lytic Assay Reagents. The luminescence signal detected correlates with the total BRAFV600E protein level in cells. Briefly, test compounds were added to the 384-well plate from a top concentration of 10 mM with 11 half log dilutions of compound, plated in duplicate. Then, 30 uL of a suspension of A375.10 cell lines was dispensed into columns 1-24 of the 384-well plates at a cell density of 7500 cells per well. The plates were kept at 37 °C with 5% C02 for the duration of the assay (6 or 24 hr). After the desired incubation time with compound, 30 uL of Nano-Glo® HiBiT Lytic Buffer containing LgBiT protein (diluted 1:100) and luminescence substrate (diluted 1:50) were added to the cells in columns 1-23 of the assay plate. The plate was the incubated for 30 min on the bench at room temperature. Finally, HiBiT luminescence signal was acquired on EnVision™ Multilabel Reader (PerkinElmer, Santa Clara, CA, USA).
Quantification of luminescence responses measured in the presence of compound were normalized to a high signal/no degradation control (untreated cells + lytic detection reagent) and a low signal/full degradation control (untreated cells, no lytic detection reagent). Data were analyzed with a 4-parameter logistic fit to generate sigmoidal dose-response curves. The DC50 is the concentration of compound at which exactly 50% of the total cellular BRAFV600E has been degraded. The Emax, or maximum effect of each compound, represents the amount of residual protein remaining in the cell following compound treatment.
Table 1: DC50 value
Figure imgf000025_0001
Figure imgf000026_0001
Pharmaceutical Compositions
The compounds of formula I or II and the pharmaceutically acceptable salts can be used as therapeutically active substances, e.g. in the form of pharmaceutical preparations. The pharmaceutical preparations can be administered orally, e.g. in the form of tablets, coated tablets, dragees, hard and soft gelatin capsules, solutions, emulsions or suspensions. The administration can, however, also be effected rectally, e.g. in the form of suppositories, or parenterally, e.g. in the form of injection solutions.
The compounds of formula I or II and the pharmaceutically acceptable salts thereof can be processed with pharmaceutically inert, inorganic or organic carriers for the production of pharmaceutical preparations. Lactose, com starch or derivatives thereof, talc, stearic acids or its salts and the like can be used, for example, as such carriers for tablets, coated tablets, dragees and hard gelatin capsules. Suitable carriers for soft gelatin capsules are, for example, vegetable oils, waxes, fats, semi-solid and liquid polyols and the like. Depending on the nature of the active substance no carriers are however usually required in the case of soft gelatin capsules. Suitable carriers for the production of solutions and syrups are, for example, water, polyols, glycerol, vegetable oil and the like. Suitable carriers for suppositories are, for example, natural or hardened oils, waxes, fats, semi-liquid or liquid polyols and the like.
The pharmaceutical preparations can, moreover, contain pharmaceutically acceptable auxiliary substances such as preservatives, solubilizers, stabilizers, wetting agents, emulsifiers, sweeteners, colorants, flavorants, salts for varying the osmotic pressure, buffers, masking agents or antioxidants. They can also contain still other therapeutically valuable substances.
Medicaments containing a compound of formula I or II or a pharmaceutically acceptable salt thereof and a therapeutically inert carrier are also provided by the present invention, as is a process for their production, which comprises bringing one or more compounds of formula I or II and/or pharmaceutically acceptable salts thereof and, if desired, one or more other therapeutically valuable substances into a galenical administration form together with one or more therapeutically inert carriers.
The dosage can vary within wide limits and will, of course, have to be adjusted to the individual requirements in each particular case. In the case of oral administration the dosage for adults can vary from about 0.01 mg to about 1000 mg per day of a compound of general formula I or II or of the corresponding amount of a pharmaceutically acceptable salt thereof. The daily dosage may be administered as single dose or in divided doses and, in addition, the upper limit can also be exceeded when this is found to be indicated. The following examples illustrate the present invention without limiting it, but serve merely as representative thereof. The pharmaceutical preparations conveniently contain about 1-500 mg, particularly 1-100 mg, of a compound of formula I or II. Examples of compositions according to the invention are:
Example A Tablets of the following composition are manufactured in the usual manner:
Figure imgf000027_0001
Table 2: possible tablet composition Manufacturing Procedure
1. Mix ingredients 1, 2, 3 and 4 and granulate with purified water.
2. Dry the granules at 50°C. 3. Pass the granules through suitable milling equipment.
4. Add ingredient 5 and mix for three minutes; compress on a suitable press.
Example B-l Capsules of the following composition are manufactured:
Figure imgf000028_0001
Table 3: possible capsule ingredient composition Manufacturing Procedure
1. Mix ingredients 1, 2 and 3 in a suitable mixer for 30 minutes. 2. Add ingredients 4 and 5 and mix for 3 minutes.
3. Fill into a suitable capsule.
The compound of formula I or II, lactose and corn starch are firstly mixed in a mixer and then in a comminuting machine. The mixture is returned to the mixer; the talc is added thereto and mixed thoroughly. The mixture is filled by machine into suitable capsules, e.g. hard gelatin capsules.
Example B-2
Soft Gelatin Capsules of the following composition are manufactured:
Figure imgf000028_0002
Table 4: possible soft gelatin capsule ingredient composition
Figure imgf000029_0001
Table 5: possible soft gelatin capsule composition Manufacturing Procedure
The compound of formula I or II is dissolved in a warm melting of the other ingredients and the mixture is filled into soft gelatin capsules of appropriate size. The filled soft gelatin capsules are treated according to the usual procedures.
Example C
Suppositories of the following composition are manufactured:
Figure imgf000029_0002
Table 6: possible suppository composition Manufacturing Procedure The suppository mass is melted in a glass or steel vessel, mixed thoroughly and cooled to
45°C. Thereupon, the finely powdered compound of formula I or II is added thereto and stirred until it has dispersed completely. The mixture is poured into suppository moulds of suitable size, left to cool; the suppositories are then removed from the moulds and packed individually in wax paper or metal foil. Example D
Injection solutions of the following composition are manufactured:
Figure imgf000030_0001
Table 7: possible injection solution composition Manufacturing Procedure
The compound of formula I or II is dissolved in a mixture of Polyethylene Glycol 400 and water for injection (part). The pH is adjusted to 5.0 by acetic acid. The volume is adjusted to 1.0 ml by addition of the residual amount of water. The solution is filtered, filled into vials using an appropriate overage and sterilized.
Example E
Sachets of the following composition are manufactured:
Figure imgf000030_0002
Table 8: possible sachet composition Manufacturing Procedure
The compound of formula I or II is mixed with lactose, microcrystalline cellulose and sodium carboxymethyl cellulose and granulated with a mixture of polyvinylpyrrolidone in water. The granulate is mixed with magnesium stearate and the flavoring additives and filled into sachets. Experimental Part
The following examples are provided for illustration of the invention. They should not be considered as limiting the scope of the invention, but merely as being representative thereof.
Bromo-Intermediates
General procedure I: Treatment of anilines with sulfamoyl chlorides / sulfonyl chlorides
A mixture of (3-(3-amino-2,6-difluorobenzoyl)-5-bromo-lH-pyrrolo[2,3-b]pyridin-l-yl)(2,6- dichlorophenyl)methanone CAS1501153-67-8 (1 eq) and an appropriately selected sulfamoyl chloride (3-4 eq) in pyridine (0.3 M) is stirred at 85 °C for 15-24 h. After cooling to room temperature the reaction mixture is partitioned between an organic solvent such as ethyl acetate or dichloromethane and 0.5M aqueous hydrogen chloride solution. The layers are separated. The aqueous layer is extracted with one or two portions of organic solvent. The combined organic layers are washed with one portion of 0.5 M aqueous hydrogen chloride solution, two 50-ml portions of 1 M sodium carbonate solution and one 50-ml portion of brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo. Purification is done by flash-chromatography.
Bromo-Intermediate 1
5-Bromo-l-(2,6-dichlorobenzoyl)-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]pyrrolo[2,3-b]pyridine
Figure imgf000031_0001
The title compound was obtained as off-white solid in 52% with a purity of 85% by UV according to the general procedure V from (3-(3-amino-2,6-difluorobenzoyl)-5-bromo-lH-pyrrolo[2,3- b]pyridin-l-yl)(2,6-dichlorophenyl)methanone and ethyl(methyl)sulfamoyl chloride. MS m/e: 646.9 ([M+H+]+). Bromo-Intermediate 2
N-[3-[5-Bromo-l -(2, 6-di chi orobenzoyl)pyrrolo[2, 3 -b]pyridine-3 -carbonyl ]-2,4-difluoro- phenyl ] pyrroli dine- 1 - sulfonami de
Figure imgf000032_0001
The title compound was obtained as off-white solid in 92 % with a purity of 80% by UV, according to the general procedure V from (3-(3-amino-2,6-difluorobenzoyl)-5-bromo-lH-pyrrolo[2,3- b]pyridin-l-yl)(2,6-dichlorophenyl)methanone and cyclopentysulfamoyl chloride. MS m/e: 659.1 ([M+H+]+). Bromo-Intermediate 3
(3R)-N-[3-[5-Bromo-l-(2,6-dichlorobenzoyl)pyrrolo[2,3-b]pyridine-3-carbonyl]-2,4- difluoro-phenyl]-3-fluoro-pyrrolidine-l-sulfonamide
Figure imgf000032_0002
The title compound was obtained as brown solid in 47 % with a purity of 77% by UV, according to the general procedure V from (3-(3-amino-2,6-difluorobenzoyl)-5-bromo-lH-pyrrolo[2,3- b]pyri din- l-yl)(2, 6-di chi orophenyl)methanone and (R)-3-fluoropyrrolidine-l-sulfamoyl chloride. MS m/e: 675, 677 ([M+H+]+).
Bromo-Intermediate 4 RS-N-[3-[5-Bromo-l-(2,6-dichlorobenzoyl)pyrrolo[2,3-b]pyridine-3-carbonyl]-2,4-difluoro- phenyl]butane-2-sulfonamide
Figure imgf000033_0001
To a solution of (3-(3-amino-2,6-difluorobenzoyl)-5-bromo-lH-pyrrolo[2,3-b]pyridin-l-yl)(2,6- dichlorophenyl)methanone (1 g, 1.9 mmol, Eq: 1) and pyridine (904 mg, 924 mΐ, 11.4 mmol, Eq: 6) in tetrahydrofuran (9.52 ml) was added butane-2-sulfonyl chloride (895 mg, 5.71 mmol, Eq:
3) at RT. The reaction mixture was heated at 65 °C for 3 d. The reaction mixture was partitioned between ethyl acetate (50 ml) and 0.5 M aqueous hydrogen chloride solution (30 ml). The layers were separated. The aqueous layer was extracted with one 50-ml portion of ethyl acetate. The combined organic layers were washed with one 30-ml portion of brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by flash chromatography to give the title compound (0.425 g, 35%) as off-white solid, MS m/e: 646.1 ([M+H+]+).
BRAE Intermediates
General procedure II: a) Suzuki cross coupling, b) 2,6-dichlorobenzoyl deprotection, c)
N-BOC deprotection a) To a mixture of an appropriately selected sulfamoyl intermediate (1 eq) or sulfonamide intermediate (1 eq), a boronic acid which is either commercially available or prepared by methods known in the art (1.5 eq) and potassium carbonate (3 eq) in 1, 2-dimethoxy ethane / water (4:1, 0.1- 0.2 M), which has been purged with argon, are consecutively added triphenylphosphine (0.1 eq) and palladium(II)acetate (0.05 eq). The mixture is stirred at reflux for 3-20 h. After cooling to room temperature the reaction mixture is partitioned between an organic solvent such as ethyl acetate or dichloromethane and 1M sodium bicarbonate solution. The layers are separated. The aqueous layer is extracted with one or two portions of organic solvent. The combined organic layers are washed with one portion of brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo. Purification by flash-chromatography gives the desired intermediate 1001. b) To a solution of an intermediate 1001 in methanol (0.1-0.3 M) is added potassium carbonate (3-5 eq). The mixture is stirred at reflux for 30-60 minutes. After cooling to room temperature the reaction mixture is filtrated over Decalite. The filtrate is concentrated in vacuo. Purification by flash-chromatography gives an intermediate 1002. c) A solution of an intermediate 1002 (1 eq) in dichloromethane (0.1 M) and trifluoroacetic acid (20 eq) is stirred at room temperature for 6-20 h. Alternatively an intermediate of formula xxx is stirred at room temperature in a solvent such as ethyl acetate or tetrahydrofuran (0.1-0.2M) and 4M hydrogen chloride solution in 1,4-dioxane (10 eq) for 20-72 h. The precipitate is filtrated and washed with ethyl acetate to give the an intermediate of formula xxx as hydrochloride salt. Optionally the free base can be obtained by partitioning the hydrochloride or trifluoroacetic acid salt between 1 M aqueous sodium carbonate solution and an organic solvent, e.g. ethyl acetate or dichloromethane. The layers are separated and the aqueous layer is extracted with two portions of the organic solvent. The combined organic layers are dried over anhydrous sodium sulfate, filtered and concentrated in vacuo to give the free base of the desired BRAF intermediate.
BRAF Intermediate 1
3-[3-[[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3- pyri dyl)- 1 H-pyrrol o [2, 3 -b ] pyri dine
Figure imgf000034_0001
The title compound was obtained as light yellow solid according to the general procedure VII after two deprotection steps, from 5-bromo-l-(2,6-dichlorobenzoyl)-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]pyrrolo[2,3-b]pyridine and (6-(4-(tert- butoxycarbonyl)piperazin- l-yl)pyri din-3 -yl)boronic acid. MS m/e: 556 ([M+H+]+).
BRAF Intermediate 2
3-[3-[[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l- ylmethyl)phenyl]-lH-pyrrolo[2,3-b]pyridine
Figure imgf000035_0001
The title compound was obtained as light brown solid according to the general procedure VII after two deprotection steps, from 5-bromo-l-(2,6-dichlorobenzoyl)-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]pyrrolo[2,3-b]pyridine and tert-butyl 4- [[4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl]methyl]piperazine-l-carboxylate. MS m/e: 569 ([M+H+]+).
BRAF Intermediate 3
3-[3-[[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(2-piperazin-l- ylpyrimidin-5-yl)-lH-pyrrolo[2,3-b]pyridine
Figure imgf000035_0002
The title compound was obtained as off-white solid according to the general procedure VII after two deprotection steps, from 5-bromo-l-(2,6-dichlorobenzoyl)-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]pyrrolo[2,3-b]pyridine and (2-(4-(tert- butoxycarbonyl)piperazin-l-yl)pyrimidin-5-yl)boronic acid. MS m/e: 557 ([M+H+]+).
BRAF Intermediate 4
3-[3-[[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[6-(piperazin-l- ylmethyl)-3-pyridyl]-lH-pyrrolo[2,3-b]pyridine
Figure imgf000036_0001
The title compound was obtained as off-white solid according to the general procedure VII after two deprotection steps, from 5-bromo-l-(2,6-dichlorobenzoyl)-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]pyrrolo[2,3-b]pyridine and (6-((4-(tert- butoxycarbonyl)piperazin- l-yl)methyl)pyri din-3 -yl)boronic acid. MS m/e: 570 ([M+H+]+).
BRAF Intermediate 5
3-[3-[[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(4-piperazin-l-ylphenyl)- lH-pyrrolo[2,3-b]pyridine
Figure imgf000036_0002
The title compound was obtained as light solid according to the general procedure VII after two deprotection steps, from 5-bromo-l-(2,6-dichlorobenzoyl)-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]pyrrolo[2,3-b]pyridine and (4-(4-(tert- butoxycarbonyl)piperazin-l-yl)phenyl)boronic acid. MS m/e: 555 ([M+H+]+).
BRAF Intermediate 6
3-[3-[[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l - ylmethyl)phenyl]-lH-pyrrolo[2,3-b]pyridine
Figure imgf000037_0001
a) tert-butyl4-[[4-[3-(3-amino-2,6-difluoro-benzoyl)-l-(2,6-dichlorobenzoyl)pyrrolo[2,3- b]pyridin-5-yl]phenyl]methyl]piperazine-l-carboxylate
Figure imgf000037_0002
A mixture of compound tert-butyl4-[[4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)phenyl]methyl]piperazine-l-carboxylate (2.433 g ,6.05 mmol), and (3 -amino-2, 6-difluoro- phenyl)-[5-bromo-l-(2,6-dichlorobenzoyl)pyrrolo[2,3-b]pyridin-3-yl]methanone (3.176 g, 6.05 mmol), l,r-bis(diphenylphosphino)ferrocene-palladium(II)di chloride dichloromethane complex (494.0 mg, 0.610 mmol) and potassium carbonate (1.673 g, 12.11 mmol) in 1,4-dioxane (50 mL) was stirred at 1000 C for 15 hours under N2. The mixture was filtered through celite, the filtrate was concentrated in vacuo to give a residue, which was purified by column chromatography on silica to afford tert-butyl4-[[4-[3-(3-amino-2,6-difluoro-benzoyl) -l-(2,6- dichlorobenzoyl)pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]piperazine-l-carboxylate (3120 mg, 71.6% yield) as yellow solid, MS m/e: 720.4 ([M+H+]+). b) tert-butyl4-[[4-[3-[3-[[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-l-(2,6- dichlorobenzoyl)pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]piperazine-l-carboxylate
Figure imgf000038_0001
To a solution of compound tert-butyl4-[[4-[3-(3-amino-2,6-difluoro-benzoyl)-l-(2,6- dichlorobenzoyl)pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]piperazine-l-carboxylate (1500.0 mg, 2.08 mmol, 1 eq) in DCM (75 mL) was added Triethylamine (0.87 mL, 6.24 mmol, 3 eq) and sulfuryl chloride (365.24 mg, 2.71 mmol, 1.3 eq) at -30 °C. After 2 h, N- methylcyclopropanamine (222.07 mg, 3.12 mmol, 1.5 eq) was added to the reaction, the reaction was stirred at -30°C for 1 h. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by column on silica and concentrated under reduced pressure to give a mixture (1.3 g) as a yellow solid. The above material was purified by prep- HPLC to give tert-butyl 4-[[4-[3-[3-[[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l-(2,6-dichlorobenzoyl)pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]piperazine-l- carboxylate (760 mg, 0.890 mmol, 37.2% yield) as a brown oil. MS m/e: 853.1 ([M+H+]+). c) 3-[3-[[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l- ylmethyl)phenyl]-lH-pyrrolo[2,3-b]pyridine hydrochloride
Figure imgf000038_0002
According to the general procedure VII starting from tert-butyl 4-[[4-[3-[3- [[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-l-(2,6- dichlorobenzoyl)pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]piperazine-l-carboxylate (750.0 mg, 0.760 mmol) and using only the two deprotection steps, the title compound was obtained as white solid (360 mg, 0.580 mmol, 94% yield) MS m/e: 581.1 ([M+H+]+).
BRAF Intermediate 7
N-[2,4-difluoro-3-[5-[4-(piperazin-l-ylmethyl)phenyl]-lH-pyrrolo[2,3-b]pyridine-3- carbonyl]phenyl]pyrrolidine-l -sulfonamide
Figure imgf000039_0001
Using to the above procedure described for BRAF Intermediate 6 starting from tert-butyl4-[[4- [3-(3-amino-2,6-difluoro-benzoyl)-l-(2,6-dichlorobenzoyl)pyrrolo[2,3-b]pyridin-5- yl]phenyl]methyl]piperazine-l-carboxylate, sulfuryl chloride and pyrrolidine, the title compound was obtained as white solid (800 mg, 70%, purity 98 %), MS m/e: 581.1 ([M+H+]+).
BRAF Intermediate 8
3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[rac-(lS,5R)-3,8- diazabicyclo[3.2.1]octan-3-yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine
Figure imgf000039_0002
a) tert-Butyl 3-[[4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl]methyl]-3,8- diazabicyclo[3.2.1 ]octane-8-carboxylate In a 25ml sealed tube, 2-(4-(bromomethyl)phenyl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (500 mg, 1.68 mmol, Eq: 1), K2C03 (465 mg, 3.37 mmol, Eq: 2) and tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (357 mg, 1.68 mmol, Eq: 1, CAS 149771-44-8) were combined with DMF (8.03 ml) to give a white suspension. The reaction mixture was heated to 23 °C and stirred for 20 h under argon. The crude reaction mixture was concentrated in vacuo, then diluted with AcOEt (10 ml) and 5 ml water, applicated over Chem Elut Cartridge (lOg), eluted with AcOEt (100 ml). The crude reaction mixture was concentrated in vacuo and dried under vacuo over night. A white solid (716 mg; yield 99%; UV purity 83%) was used without further purification for the next step. LCMS (ESI+) : 429.2 (M+H) b) tert-Butyl 3-[[4-[3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH- pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
In a 20 mL sealed tube, tert-butyl 3-(4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (362 mg, 845 pmol, Eq: 2), 5-bromo-3-[3- [[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine (200 mg, 423 pmol, Eq: 1) and potassium carbonate (175 mg, 1.27 mmol, Eq: 3) were combined with Dioxane (3 ml) and water (0.3 ml) to give a brown suspension under argon. XPHOS PD G2 (66.5 mg, 84.5 pmol, Eq: 0.2) and XPHOS (40.3 mg, 84.5 pmol, Eq: 0.2) were added. The reaction mixture was heated to 130 °C and stirred for 2 h. The reaction mixture was diluted with AcOEt (10 ml) and water (5 ml), applicated over Chem Elut Cartridge (lOg), eluted with AcOEt (100 ml) and concentrated in vacuo. The crude material was purified by flash chromatography to give brown residue (220 mg; yield 74%; UV purity 68%). LCMS (ESI+) : 695.4 (M+H)
Figure imgf000040_0001
c) 5-[4-(3,8-diazabicyclo[3.2.1]octan-3-ylmethyl)phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-
2.6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;2,2,2-trifluoroacetic acid
In a 25 mL round-bottomed flask, tert-butyl 3-(4-(3-(3-((N-ethyl-N-methylsulfamoyl)amino)-
2.6-difluorobenzoyl)-lH-pyrrolo[2,3-b]pyridin-5-yl)benzyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (220 mg, 317 pmol, Eq: 1) was combined with DCM (10 ml) to give a yellow solution. TFA (1.48 g, 1 ml, 13 mmol, Eq: 41) was added. The reaction mixture was heated to 23 °C and stirred for 20 h. The crude reaction mixture was concentrated in vacuo. The crude material was triturated with EtOAc and heptane to give K1 176 mg (78% yield; UV purity 100%) as white solid. LCMS (ESI+) : 595.2 (M+H)
BRAF Intermediate 9
3 -[3 -[[ethyl (methyl )sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-(4-pi peri dyl)piperazin-l - yl ] methyl ] phenyl ] - 1 H-pyrrol o [2, 3 -b ] pyri dine
Figure imgf000041_0001
a) tert-butyl 4-[4-[[4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl]methyl]piperazin-l- yl]piperidine-l-carboxylate
In a 250 mL round-bottomed flask, 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzaldehyde (862 mg, 3.71 mmol, Eq: 1), tert-butyl 4-(piperazin-l-yl)piperidine-l-carboxylate (lg, 3.71 mmol, Eq: 1) and acetic acid (223 mg, 213 mΐ, 3.71 mmol, Eq: 1) were combined with DCM (35ml) to give a light yellow solution. The reaction mixture was stirred for 15min at RT. Sodium triacetoxyborohydride (1.02 g, 4.83 mmol, Eq: 1.3) was added. The reaction mixture was stirred over night at RT, then diluted with AcOEt (10 ml) and water (5 ml), applicated over Chem Elut Cartridge (lOg), eluted with AcOEt (100 ml). The crude reaction mixture was concentrated in vacuo to give 3.5 g (83%, purity 43%) as white gum used for the next step without purification. b) tert-butyl 4-[4-[[4-[l-(2,6-dichlorobenzoyl)-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]pyrrolo[2,3-b]pyridin-5-yl]phenyl]methyl]piperazin-l-yl]piperidine-l- carboxylate
In a 20 mL tube, tert-butyl 4-(4-(4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzyl)piperazin-l-yl)piperidine-l-carboxylate (2.39 g, 2.11 mmol, Eq: 2), 5-bromo-3-[3- [[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine (500 mg, 1.06 mmol, Eq: 1) and potassium carbonate (292 mg, 2.11 mmol, Eq: 2) were combined with Dioxane (7.5 ml) and water (2ml) to give a light yellow suspension. Chloro(2- dicyclohexylphosphino-2',4',6'-triisopropyl-l,r-biphenyl)[2-(2'-amino-l,r- biphenyl)]palladium(II) (XPHOS PD G2) (166 mg, 211 pmol, Eq: 0.2) and 2- ( dicyclohexylphosphino)-2',4',6'- triisopropylbiphenyl (XPHOS) (101 mg, 211 pmol, Eq: 0.2) were added under argon. The reaction mixture was heated to 130 °C and stirred for 1.5h, and then concentrated in vacuo. The reaction mixture was diluted with AcOEt (10 ml) and water (5 ml), applicated over Chem Elut Cartridge (lOg), eluted with AcOEt (100 ml) and the volatiles were removed. The above material was purified by flash chromatography to give 488mg (61%, purity 87%) of a orange oil. LCMS (ESI+) : 752.6 (M+H). c) 3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-(4-piperidyl)piperazin- l-yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine; 2,2,2-trifluoroacetic acid
In a 150 mL round-bottomed flask, tert-butyl 4-(4-(4-(3-(3-((N-ethyl-N- methylsulfamoyl)amino)-2,6-difluorobenzoyl)-lH-pyrrolo[2,3-b]pyridin-5-yl)benzyl)piperazin- l-yl)piperidine-l-carboxylate (488mg, 649 pmol, Eq: 1) and TFA (740 mg, 500 pi, 6.49 mmol, Eq: 10) were combined with DCM (5 ml) to give a orange suspension. The reaction was stirred for 1.5hr at RT. The reaction mixture was concentrated in vacuo to give 593 mg light brown solid. Recrystallization from EtOAc and heptane afforded a light brown solid. K1 362 mg 73% purity 97% LCMS (ESI+) : 652.6 (M+H)
BRAF Intermediate 10
N-[2,4-difluoro-3-[5-(6-piperazin-l-yl-3-pyridyl)-lH-pyrrolo[2,3-b]pyridine-3- carbonyl]phenyl]butane-2-sulfonamide
Figure imgf000042_0001
The title compound was obtained as off-white solid according to the general procedure VII after two deprotection steps, from N-(3-(5-bromo-l-(2,6-dichlorobenzoyl)-lH-pyrrolo[2,3-b]pyridine- 3-carbonyl)-2,4-difluorophenyl)butane-2-sulfonamide and (6-(4-(tert-butoxycarbonyl)piperazin- l-yl)pyri din-3 -yl)boronic acid. MS m/e: 555 ([M+H+]+). CRBN Intermediates
CRBN Intermediate 1
2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-4-yl]piperidin-4-yl]acetic acid
Figure imgf000043_0001
A mixture of 2-(4-piperidyl)acetic acid hydrochloride (2341.26 mg, 13.03 mmol, 1.2 eq) 2 -(2, 6- dioxo-3-piperidyl)-4-fluoro-isoindoline-l,3-dione (3000.0 mg, 10.86 mmol, 1 eq) N,N- Diisopropylethylamine (5.68 mL, 32.58 mmol, 3 eq) in DMSO (50 mL) was stirred at 100 °C for 16 h. The reaction mixture was poured into water(500mL), and then the mixture was extracted with EtOAc (200.0 mL x 3). The combined organic layers were washed with brine (250.0 mL), dried (Na2S04) and concentrated to give a residue. The residue was dissolved in ACN(30mL) and stirred for 5 min, then a yellow solid was precipitated, filtered and the filter cake was dried under high vacuum to afford2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyljacetic acid (2300 mg, 5.76 mmol, 52% yield, purity 98% ) as a yellow solid, MS m/e : 400.1 ([M+H+]+).
CRBN Intermediate 2
2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-4-yl]pyrrolidin-3-yl]acetic acid
Figure imgf000043_0002
A mixture of 2-(2,6-dioxopiperidin-3-yl)-4-fluoroisoindoline-l,3-dione (CAS 835616-60-9) (0.3 g, 1.09 mmol, Eq: 1), 2-(pyrrolidin-3-yl)acetic acid hydrochloride (234 mg, 1.41 mmol, Eq: 1.3) and N,N-diisopropylethylamine (421 mg, 569 mΐ, 3.26 mmol, Eq: 3) in N-methyl-2-pyrrolidinone (2.17 ml) was heated at 150 °C and stirred for 1 h. The reaction mixture was partitioned between ethyl acetate (30 ml) and 0.1 M aqueous hydrogen chloride solution (30 ml). The layers were separated. The aqueous layer was extracted with two 30-ml portions of ethyl acetate. The combined organic layers were washed with one 30-ml portion of 0.1 M aqueous hydrogen chloride solution and one 20-ml portion of brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo. The residue was triturated in ethyl acetate (5-ml). The precipitate was collected by filtration, washed with cold ethyl acetate and dried in vacuo to give the title compound (0.395 g, 94 %; purity 100%) as yellow solid. MS m/e : 386.1 ([M+H+]+)
CRBN Intermediate 3
3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-4-yl]piperidin-4-yl]propanoic acid
Figure imgf000044_0001
Using a procedure analogous to that described in example CRBN intermediate 1 starting from 2- (2,6-dioxo-3-piperidyl)-4-fluoro-isoindoline-l,3-dione and 3-(4-piperidyl)propanoic acid hydrochloride, the title compound was obtained as yellow solid (2.30 g, 50%, purity 97%), MS m/e : 414.1 ([M+H+]+).
CRBN Intermediate 4 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-4-yl]amino]cyclohexane-l-carboxylic acid
Figure imgf000045_0002
To a solution of trans-4-aminocyclohexanecarboxylic acid (0.5 g, 3.49 mmol, 1 eq) in NMP (4 mL) was added 2-(2,6-dioxo-3-piperidyl)-4-fluoro-isoindoline-l,3-dione (0.96 g, 3.49 mmol, 1 eq) and TEA (1059.46 mg, 10.47 mmol, 3 eq), and the reaction mixture was stirred at 150 °C for 1 h at microwave. Purification by HPLC-prep (HC1) afford 4-[[2-(2,6-dioxo-3-piperidyl)-l,3- dioxo-isoindolin-4-yl]amino]cyclohexanecarboxylic acid (0.480 g, 1.2 mmol, 34 % yield) as yellow solid, MS m/e : 400 ([M+H]+ ).
CRBN Intermediate 5 3-[[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-4-yl]amino]cyclobutane-l-carboxylic acid
Figure imgf000045_0001
The title compound was obtained as a yellow solid (0.21 g, 52%), MS m/e : 372 ([M+H+]+), using an analogous procedure to the one used for example CRBN intermediate 2 starting from 2-(2,6- dioxo-3-piperidyl)-4-fluoro-isoindoline-l,3-dione and (lR,3R)-3-aminocyclobutane-l-carboxylic acid hydrochloride.
CRBN Intermediate 6
2-[4-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-5-yl]oxypiperidin-l-yl]acetic acid
Figure imgf000046_0001
a) tert-Butyl 2-(4-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-5-yl)oxy)piperidin-l- yl)acetate
To a solution of 2-(2,6-dioxopiperidin-3-yl)-5-(piperidin-4-yloxy)isoindoline-l,3-dione CAS2222116-10-9-(93 mg, 260 pmol, Eq: 1) and tert-butyl 2-bromoacetate (45.7 mg, 34.6 mΐ,
234 pmol, Eq: 0.9) in N,N-dimethylformamide (2.6 ml) was added DIPEA (101 mg, 136 pi, 781 pmol, Eq: 3). The reaction mixture was heated at 60 °C for 15 h. The reaction mixture was partitioned between ethyl acetate (15 ml) and 1 M sodium bicarbonate solution (10 ml). The layers were separated. The aqueous layer was extracted with 1 10-ml portions of ethyl acetate. The combined organic layers were washed with 3 10-ml portion of water and brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo to give off-white solid (125 mg, 100%, purity 100%), MS m/e : 472 ([M+2]+). b) 2-[4-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-5-yl]oxypiperidin-l-yl]acetic acid
To a solution of tert-butyl 2-(4-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-5- yl)oxy)piperidin-l-yl)acetate (125 mg, 265 pmol, Eq: 1) in dichloromethane (2.65 ml) was added trifluoroacetic acid (605 mg, 408 pi, 5.3 mmol, Eq: 20). The reaction mixture was stirred at rt for 30 hours, then concentrated in vacuo. Kugelrohr distillation was used to remove excess of DMF from previous step. The title compound was obtained as white powder (110 mg, 98%, purity 98%), MS m/e : 416 ([M+H+]+).
CRBN Intermediate 7
3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-4-yl]azetidin-3-yl]propanoic acid
Figure imgf000047_0001
The title compound was obtained as a yellow solid (0.25 g, 25%), MS m/e : 386 ([M+H+]+), using an analogous procedure to the one used for example CRBN intermediate 2 starting from 2-(2,6- dioxo-3-piperidyl)-4-fluoro-isoindoline-l,3-dione and 3-(azetidin-3-yl)propanoic acid hydrochloride.
CRBN Intermediate 8 l-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-5-yl]piperidine-4-carboxylic acid
Figure imgf000047_0003
The title compound was obtained as light green solid (2.93 g, 67%, purity 95%), MS m/e : 386.0 ([M+H+]+), using a procedure analogous to that described in example CRBN intermediate 1 starting from 2-(2,6-dioxo-3-piperidyl)-5-fluoro-isoindoline-l,3-dione and isonipecotic acid.
CRBN Intermediate 9 2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3-dioxoisoindol-5-yl]piperidin-4-yl]acetic acid
Figure imgf000047_0002
Using a procedure analogous to that described in example CRBN intermediate 1 starting from 2- (2,6-dioxo-3-piperidyl)-5-fluoro-isoindoline-l,3-dione and 2-(4-piperidyl)acetic acid hydrochloride, the title compound was obtained as yellow solid (2.12 g, 47%, purity 97%), MS m/e : 400.3 ([M+H+]+).
CRBN Intermediate 10
4-[[2-(2,6-dioxopiperidin-3-yl)- l -oxo-3//-isoindol-4-yl]oxy]butanoic acid
Figure imgf000048_0001
a) Methyl 4-(4-tert-butoxy-4-oxo-butoxy)-2-methyl-benzoate
In a round-bottom flask, methyl 3-hydroxy-2-methylbenzoate (2.0 g, 12.04 mmol, 1 eq) was dissolved in DMF (10 mL) and K2CO3 (3.32 g, 24.07 mmol, 2 eq) were added to the stirred solution. Then t-butyl 4-bromobutanoate (3.22 g, 14.44 mmol, 1.2 eq) was added dropwise. The resulting mixture was stirred at 60 °C for 12 h. The reaction mixture was purified by prep-HPLC (ACID) to afford methyl 3-(4-tert-butoxy-4-oxo-butoxy)-2- methyl -benzoate (3 g, 9.73 mmol, 80 % yield, purity >95%) as white solid. b) Methyl 2-(bromomethyl)-3-(4-tert-butoxy-4-oxo-butoxy)benzoate
A mixture of methyl 4-(4-tert-butoxy-4-oxo-butoxy)-2-m ethyl -benzoate (3.7 g, 12 mmol, 1 eq), N-bromosuccinimide (2.35 g, 13.2 mmol, 1.1 eq) and 2,2'-azobis(2- methylpropionitrile) (0.2 g, 1.2 mmol, 0.100 eq) in carbon tetrachloride (200 mL) was stirred at 80 °C for 4 h under N2 atmosphere. After cooling to room temperature, the solvent was removed under reduced pressure. The residue was purified by silica gel chromatography to give methyl 2-(bromomethyl)-4-(4-tert-butoxy-4-oxo-butoxy)benzoate (4.65 g) as a light yellow oil. c) tert-Butyl 4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoate
To a solution of methyl 2-(bromomethyl)-3-(4-tert-butoxy-4-oxo-butoxy)benzoate (4.0 g, 10.33 mmol, 1 eq) in ACN (70 mL) was added K2CO3 (11.49 g, 82.63 mmol, 8 eq) and 3-aminopiperidine-2,6-dione hydrochloride (1.7 g, 10.33 mmol, 1 eq), and the reaction mixture was stirred at 80 °C for 12 h. Purification by Prep-HPLC(acid) afford tert-butyl 4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoate (1 g, 2.48 mmol, 24% yield, purity 63%) as light yellow solid. d) 4-[2-(2,6-Dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoic acid
To a solution of tert-butyl 4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4- yljoxybutanoate (1.0 g, 2.48 mmol, 1 eq) in DCM (15 mL) was added TFA (5.0 mL, 2.48 mmol, 1 eq), and the reaction mixture was stirred at 25 °C for 12 h. Purification by prep- HPLC(TFA) afford 4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoic acid (0.270 g, 0.780 mmol, 30 % yield, purity 95%) as light yellow solid, MS m/e : 347 ([M+H+]+).
GENERAL COUPLING PROCEDURE General procedure III: Amide coupling
To a mixture of an appropriately selected acid CRBN intermediate (1 eq) in a solvent such as N,N-dimethylformamide or N-methylpyrrolidone (0.1-0.3 M) is added a coupling reagent such as HATU (l-[bis(dimethylamino)methylene]-lH-l,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate; 1 eq). The reaction mixture is stirred at room temperature for 30 minutes. An appropriately selected BRAF intermediate is added and stirring is continued for 1-24 h. The reaction mixture is partitioned between an organic solvent such as ethyl acetate or dichloromethane/methanol (19:1) and 1M sodium bicarbonate solution. The layers are separated. The aqueous layer is extracted with one or two portions of organic solvent. The combined organic layers are washed with one portion of brine, dried over anhydrous sodium sulfate, filtered and concentrated in vacuo. Purification by flash-chromatography with dichloromethane / methanol or by preparative HPLC give the desired degrader.
General procedure IV: Urea formation
To a solution of an appropriately selected CRBN intermediate (1 eq) in a solvent mixture consisting of tetrahydrofuran and dichloromethane (1:1 to 5:1, 0.003 M) is added N-N- diisopropylethyl amine (5 eq) and bis(trichloromethyl)carbonate (0.4 eq) at room temperature. After lh, an appropriately selected BRAF intermediate (1 eq) is added to the reaction. The reaction mixture is heated to 60-70 °C and stirring is continued for 2-12 h. The solvent mixture is evaporated and the residue is purified by preparative HPLC to give the desired degrader. Example 1
Figure imgf000050_0001
5-[4-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin-l- yl]methyl]phenyl]-3 -[3 -[[ethyl (methyl )sulfamoyl]amino]-2,6-difluoro-benzoyl]-l //-pyrrol o[2, 3- b] pyri dine
According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]butanoic acid (CAS 2225940-47-4) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l-ylmethyl)phenyl]-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 2), the title compound was obtained as yellow solid, MS m/e: 910.3 ([M+H+ j ).
Example 2
Figure imgf000050_0002
5-[4-[[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-py rrol o [2, 3 -b ] pyri dine According to general procedure III starting from 3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]piperidin-4-yl]propanoic acid (CRBN Intermediate 3) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l-ylmethyl)phenyl]-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 2), the title compound was obtained as white solid, MS m/e: 964.4 ([M+H+ j ).
Example 3
Figure imgf000051_0001
5-[4-[[4-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]acetyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-b enzoyl ] - 1 H-py rrol o [2, 3 -b ] pyri dine
According to general procedure III starting from 2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]piperidin-4-yl]acetic acid (CRBN Intermediate 1) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l-ylmethyl)phenyl]-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 2), the title compoundwas obtained as yellow solid, MS m/e: 950.4 (/M H / ).
Example 4
Figure imgf000051_0002
3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[rac-(lR,5S)-8-[4-[[2-(2,6- dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]-3,8-diazabicyclo[3.2.1]octan-3- yl ] methyl ] phenyl ] - 1 //-pyrrol o [2, 3 -b ] pyri dine According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]butanoic acid (CAS 2225940-47-4) and 3-[3- [[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[rac-(lS,5R)-3,8- diazabicyclo[3.2.1]octan-3-yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 8), the title compound was obtained as yellow solid (10 mg, 19%), MS m/e: 936.4 ([M+H+]+).
Example 5
Figure imgf000052_0001
5-[6-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin-l- yl]methyl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-l//- pyrrolo[2,3-b]pyridine
According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]butanoic acid (CAS 2225940-47-4) and 3-[3-
[[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[6-(piperazin-l-ylmethyl)-3-pyridyl]- lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 4), the title compound was obtained as white solid, MS m/e: 456 (/M 2 H / ).
Example 6
Figure imgf000053_0001
5-[2-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]pyrimidin-5-yl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]- l//-pyrrolo[2,3-b]pyridine
According to general procedure III starting from 3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]piperidin-4-yl]propanoic acid (CRBN Intermediate 3) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(2-piperazin-l-ylpyrimidin-5-yl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 3), the title compound was obtained as white solid, MS m/e: 953 ([M+H+ j ).
Example 7
Figure imgf000053_0002
5-[2-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin-l- yl]pyrimidin-5-yl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3- b] pyridine
According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]butanoic acid (CAS 2225940-47-4) and 3-[3- [[Ethyl (methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(2-piperazin-l-ylpyrimidin-5-yl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 3), the title compoundwas obtained as yellow solid, MS m/e: 898 (/M H / ).
Example 8
Figure imgf000054_0001
N-[3-[5-[4-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]butanoyl]piperazin-l -yl]methyl]phenyl] - l//-pyrrolo[2,3-b]pyridine-3-carbonyl]-2,4- difluoro-phenyl]pyrrolidine-l -sulfonamide formic acid According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]butanoic acid (CAS 2225940-47-4) and N-[2,4-difluoro-3-[5-[4- (piperazin-l-ylmethyl)phenyl]-lH-pyrrolo[2,3-b]pyridine-3-carbonyl]phenyl]pynOlidine-l- sulfonamide (BRAF Intermediate 7), the title compoundwas obtained as yellow solid (55 mg, 28% yield), MS m/e: 922.0 (/M H / ).
Example 9
Figure imgf000055_0001
3-[3-[[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-[4-[[2-(2,6-dioxo-3- piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin-l-yl]methyl]phenyl]-l/7- pyrrolo[2,3-b]pyridine formic acid
According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]butanoic acid (CAS 2225940-47-4) and 3-[3- [[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l- ylmethyl)phenyl]-lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 6), the title compoundwas obtained as yellow solid (20.8 mg, 25% yield), MS m/e: 922.0 (/M H j ).
Example 10
Figure imgf000055_0002
5-[6-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]-l//-pyrrolo[2,3-b]pyridine According to general procedure III starting from 3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]piperidin-4-yl]propanoic acid (CRBN Intermediate 3) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1), the title compound was obtained as yellow solid, MS m/e: 951.4 ([M+H+ j ).
Example 11
Figure imgf000056_0001
5-[6-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin-l-yl]- 3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-l //-pyrrol o[2, 3- b] pyridine
According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]butanoic acid (CAS 2225940-47-4) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1 ), the title compoundwas obtained as white solid, MS m/e: 897.3 (/M H / ).
Example 12
Figure imgf000056_0002
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]oxypiperidine-l- carbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l /-pyrrolo[2,3-b]pyridine According to general procedure IV starting from 2-(2,6-Dioxo-3-piperidyl)-5- (4piperidyloxy)isoindoline-l,3-dione (CRBN Intermediate 6) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1 ), the title compoundwas obtained as white solid, MS m/e: 939.5 (/M H / ).
Example 13
Figure imgf000057_0001
5-[6-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclohexanecarbonyl]piperazin-l-yl]-3-pyridyl]-3-[3- [[ethyl (methyl )sulfamoyl]amino]-2,6-difluoro-benzoyl]-l //-pyrrol o[2,3-b]pyri dine
According to general procedure III starting from 4-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]cyclohexane-l -carboxylic acid (CRBN Intermediate 4) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1 ), the title compound was obtained as white solid, MS m/e: 937.6 (/M H / ).
Example 14
Figure imgf000058_0001
5-[4-[[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-l /-pyrrolo[2,3-b]pyridine
According to general procedure III starting from 3-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]cyclobutane-l-carboxylic acid (CRBN Intermediate 5) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-(piperazin-l-ylmethyl)phenyl]-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 2), the title compoundwas obtained as white solid, MS m/e: 922 ([M+H+ j ).
Example 15
Figure imgf000058_0002
5-[6-[[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]methyl]-3-pyridyl]-3-[3-
[[ethyl (methyl )sulfamoyl]amino]-2,6-difluoro-benzoyl]-l //-pyrrol o[2,3-b]pyri dine
According to general procedure III starting from 3-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]cyclobutane-l-carboxylic acid (CRBN Intermediate 5) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[6-(piperazin-l-ylmethyl)-3-pyridyl]- lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 4), the title compound was obtained as yellow solid, MS m/e: 923 (/M H / ). Example 16
Figure imgf000059_0001
5-[6-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]- 2,6-difluoro-benzoyl]-l//-pyrrolo[2,3-b]pyridine
According to general procedure III starting from 3-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]cyclobutane-l-carboxylic acid (CRBN Intermediate 5) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1 ), the title compoundwas obtained as white solid, MS m/e: 455 (/M 2 H / ).
Example 17
Figure imgf000059_0002
5-[6-[4-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]pyrrolidin-3- yl]acetyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l//-pyrrolo[2,3-b]pyridine According to general procedure III starting from 2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]pyrrolidin-3-yl]acetic acid (CRBN Intermediate 2) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1 ), the title compound was obtained as yellow solid, MS m/e: 923 (/M H / ).
Example 18
Figure imgf000060_0001
5-[6-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]azetidin-3- yl]propanoyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl] -l//-pyrrolo[2,3-b]pyri dine
According to general procedure III starting from 3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]azetidin-3-yl]propanoic acid (CRBN Intermediate 7) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1 ), the title compoundwas obtained as yellow solid, MS m/e: 923 (/M H / ).
Example 19
Figure imgf000061_0001
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l-yl]-3- pyridyl] -3 -[3 -[[ethyl (methyl )sulfamoyl]amino]-2,6-difluoro-benzoyl]-l /-pyrrol o[2,3-b]pyri dine According to general procedure III starting from 4-[[2-(2,6-dioxopiperidin-3-yl)-l-oxo-3 /- isoindol-4-yl]oxy]butanoic acid (CRBN Intermediate 10) and 3-[3-
[[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate l), the title compoundwas obtained as white solid, MS m/e: 884.6 (/M H / ).
Example 20
Figure imgf000061_0002
5-[6-[4-[2-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]oxy-l- piperidyl]acetyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l /-pyrrolo[2,3-b]pyridine
According to general procedure III starting from 2-[4-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-5-yl]oxypiperidin-l-yl]acetic acid (CRBN Intermediate 6) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 1 ), the title compound was obtained as white solid, MS m/e: Ml (/M 2 H / ). Example 21
Figure imgf000062_0001
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]piperidine-l-carbonyl]piperazin- 1 -yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]- l//-pyrrolo[2,3- b] pyridine
According to general procedure IV starting from 2-(2,6-Dioxopiperidin-3-yl)-5-piperidin-4- ylisoindole-l,3-dione (CAS 2229718-43-6) and 3-[3-[[Ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]-5-(6-piperazin-l-yl-3-pyridyl)-lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 1), the title compound was obtained as white solid, MS m/e: 462 ([ /2+H+ / ).
Example 22
Figure imgf000062_0002
/V-[3-[5-[6-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin- 1 -yl]-3-pyridyl]- l//-pyrrolo[2,3-b]pyridine-3- carbonyl]-2,4-difluoro-phenyl]butane-2-sulfonamide
According to general procedure III starting from 3-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]cyclobutane-l-carboxylic acid (CRBN Intermediate 5) and N-[2,4- difluoro-3-[5-(6-piperazin-l-yl-3-pyridyl)-lH-pyrrolo[2,3-b]pyridine-3-carbonyl]phenyl]butane- 2-sulfonamide (BRAF Intermediate 10), the title compound was obtained as yellow solid, MS m/e: 455 ([M/2+H+]+). Example 23
Figure imgf000063_0001
5-[2-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l- yljpyri mi din-5-yl]-3 -[3 -[[ethyl (methyl )sulfamoyl]amino]-2,6-dif1uoro-benzoyl]- l //-pyrrol o[2, 3- b] pyridine
According to general procedure III starting from 4-[[2-(2,6-dioxopiperidin-3-yl)-l-oxo-3 /- isoindol-4-yl]oxy]butanoic acid (CRBN Intermediate 10) and 3-[3- [[Ethyl (methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(2-piperazin-l-ylpyrimidin-5-yl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 3), the title compoundwas obtained as white solid, MS m/e: 885.6 ([M+H+J+f
Example 24
Figure imgf000063_0002
5-[4-[[4-[l-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4-piperidyl]acetyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-! //-pyrrolo[2,3-b]pyri dine According to general procedure III starting from 2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]piperidin-4-yl]acetic acid (CRBN Intermediate 1) and 3-[3- [[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-(4-piperidyl)piperazin-l- yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 9), the title compound was obtained as yellow solid, MS m/e: 1033.9 f/M H I ). Example 25
Figure imgf000064_0001
5-[4-[[4-[l-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]piperidine-4-carbonyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]- l//-pyrrolo[2,3-b]pyridine
According to general procedure III starting from l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-5-yl]piperidine-4-carboxylic acid (CRBN Intermediate 8) and 3-[3- [[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-(4-piperidyl)piperazin-l- yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 9), the title compound was obtained as yellow solid, MS m/e: 1019.9 (jM H / ).
Example 26
Figure imgf000064_0002
5-[4-[[4-[l-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]-4-piperidyl]acetyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l//-pyrrolo[2,3-b]pyridine According to general procedure III starting from 2-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-5-yl]piperidin-4-yl]acetic acid (CRBN Intermediate 9) and 3-[3- [[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-(4-piperidyl)piperazin-l- yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 9), the title compound was obtained as white solid, MS m/e: 1033.9 ([M+H+]+).
Example 27
Figure imgf000065_0001
5-[4-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl] -l//-pyrrolo[2,3-b]pyri dine
According to general procedure III starting from 3-[l-[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]piperidin-4-yl]propanoic acid (CRBN Intermediate 3) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(4-piperazin-l-ylphenyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 5), the title compound was obtained as yellow solid, MS m/e: 950.8 (/M H / ).
Example 28
Figure imgf000066_0001
5-[4-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-
2,6-difluoro-benzoyl]-l /-pyrrolo[2,3-b]pyridine
According to general procedure III starting from 3-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]cyclobutane-l-carboxylic acid (CRBN Intermediate 5) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(4-piperazin-l-ylphenyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 5), the title compoundwas obtained as white solid, MS m/e: 908.7 ([M+H+ j ).
Example 29
Figure imgf000066_0002
5-[4-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l-yl]phenyl]- 3 -[3 -[[ethyl (methyl )sulfamoyl]ami no] -2,6-difluoro-benzoyl]-l //-pyrrol o[2,3-b]pyri dine According to general procedure III starting from 4-[[2-(2,6-dioxopiperidin-3-yl)-l -oxo-3//- isoindol-4-yl]oxy]butanoic acid (CRBN Intermediate 10) and 3-[3- [[Ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-(4-piperazin-l-ylphenyl)-lH- pyrrolo[2,3-b]pyridine (BRAF Intermediate 5), the title compoundwas obtained as white solid, MS m/e: 883.7 ([M+H+ j ).
Figure imgf000067_0001
5-[4-[[4-[l-[6-[[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindol-4-yl]amino]hexanoyl]piperidin-4- yl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluorobenzoyl]- 1 //-pyrrol o[2, 3 -bjpyridine
5-[4-[[4-[l-[6-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]hexanoyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-l /-pyrrolo[2,3-b]pyridine
According to general procedure III starting from 6-[[2-(2,6-Dioxopiperidin-3-yl)-l,3- dioxoisoindol-4-yl]amino]hexanoic acid (CAS 2225940-49-6) and 3-[3- [[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-(4-piperidyl)piperazin-l- yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine (BRAF Intermediate 9), the title compoundwas obtained as yellow solid, MS m/e: 1021.9 ([M+H+ / ).

Claims

Claims
1. A compound of formula (I) or (II), or a pharmaceutically acceptable salt thereof,
Figure imgf000068_0001
A1 is selected from i) -NR2-, and ii) -CHR3-;
R1 is selected from i) H, ii) Ci-6-alkyl, and iii) C3-8-cycloalkyl; R2 is selected from i) H, ii) Ci-6-alkyl, and iii) C3-8-cycloalkyl; or R1 and R2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R14, R15 and R16;
R3 is selected from i) H, ii) Ci-6-alkyl, and iii) C3-8-cycloalkyl; or R1 and R3 together with the carbon atom to which they are attached form a cycloalkyl optionally substituted by R14, R15 and R16;
R14, R15 and R16 are independently selected from i) H, ii) halogen, iii) Ci-6-alkyl, and iv) C3-8-cycloalkyl;
R7 and R8 are independently selected from i) H, and ii) halogen;
A2 and A3 are independently selected from i) -CH-, and ii) -N-;
X is selected from i) a bound, ii) -NR4-, and iii) -0-;
R4 is selected from i) H, and ii) Ci-6-alkyl;
A4 is selected from i) -C(O)-, and ii) -CH2-; A is selected from i) -(CFh)p-; and ii) the ring systems A, B, C, D, E and F;
Figure imgf000070_0001
p is selected from i) 3, and ii) 5; m is selected from i) 0, ii) 1, iii) 2;
B is selected from the ring systems G and H;
Figure imgf000070_0002
n is selected from i) 0, and ii) 1;
R5 and R6 are independently selected from i) H, and i) Ci-6-alkyl; or R5 and R6 together form -CH2-.
2. A compound according to claim 1, or a pharmaceutically acceptable salt thereof, wherein A1 is selected from i) -NR2-, and ii) -CHR3-;
R1 is selected from i) Ci-6-alkyl, and ii) C3-8-cycloalkyl;
R2 is Ci-6-alkyl; or R1 and R2 together with the nitrogen atom to which they are attached form an unsubstituted heterocycloalkyl;
R3 is Ci-6-alkyl;
R7 and R8 are halogen;
A2 and A3 are independently selected from i) -CH-, and ii) -N-;
X is selected from i) a bound, ii) -NR4-, and iii) -0-;
R4 is H;
A4 is selected from i) -C(O)-, and ii) -CH2-;
A is selected from i) -(CFh)p-; and ii) the ring systems A, B, C, D, E and F;
Figure imgf000072_0001
p is selected from i) 3, and ii) 5; m is selected from i) 0, ii) 1, iii) 2;
B is selected from the ring systems G and H;
Figure imgf000072_0002
n is selected from i) 0, and ii) 1;
R5 and R6 are H; or R5 and R6 together form -CH2-.
3. A compound according to claims 1 or 2, or a pharmaceutically acceptable salt thereof, wherein the compound is of formula (I).
4. A compound according to claims 1 or 2, or a pharmaceutically acceptable salt thereof, wherein the compound is of formula (II).
5. A compound according to anyone of claims 1 to 4, or a pharmaceutically acceptable salt thereof, wherein R1 is selected from i) Ci-6-alkyl, and ii) C3-8-cycloalkyl.
6. A compound according to anyone of claims 1 to 5, or a pharmaceutically acceptable salt thereof, wherein R2 is Ci-6-alkyl.
7. A compound according to any one of claims 1 to 6, or a pharmaceutically acceptable salt thereof, wherein R1 and R2 together with the nitrogen atom to which they are attached form a heterocycloalkyl optionally substituted by R14, R15 and R16.
8. A compound according to any one of claims 1 to 7, or a pharmaceutically acceptable salt thereof, wherein R1 and R2 together with the nitrogen atom to which they are attached form anunsub stituted heterocycloalkyl .
9. A compound according to any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, wherein the heterocycloalkyl formed by R1 and R2 together with the nitrogen atom to which they are attached is a pyrrolidinyl.
10. A compound according to any one of claims 1 to 9, or a pharmaceutically acceptable salt thereof, wherein R3 is Ci-6-alkyl.
11. A compound according to any one of claims 1 to 10, or a pharmaceutically acceptable salt thereof, wherein R7 and R8 are halogen.
12. A compound according to any one of claims 1 to 11, or a pharmaceutically acceptable salt thereof, wherein R4 is H.
13. A compound according to any one of claims 1 to 12, or a pharmaceutically acceptable salt thereof, wherein R5 and R6 are H.
14. A compound according to any one of claims 1 to 13, or a pharmaceutically acceptable salt thereof, wherein R5 and R6 together form -CH2-.
15. A compound according to any one of claims 1 to 14, or a pharmaceutically acceptable salt thereof, selected from 5-[4-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin- l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH- pyrrol o [2, 3 -b ] pyri dine ;
5-[4-[[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-
2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]acetyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[rac-(lR,5S)-8-[4-[[2-
(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]-3,8- diazabicyclo[3.2.1]octan-3-yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin- l-yl]methyl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH- pyrrolo[2,3-b]pyridine;
5-[2-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]pyrimidin-5-yl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-
2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[2-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin- 1 -yl]pyri mi din-5-yl]-3 -[3 -[[ethyl (methyl )sulfamoyl]amino]-2,6-difluoro-benzoyl]-l H- pyrrolo[2,3-b]pyridine;
N-[3-[5-[4-[[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]butanoyl]piperazin-l-yl]methyl]phenyl]-lH-pyrrolo[2,3-b]pyridine-3-carbonyl]- 2,4-difluoro-phenyl]pyrrolidine-l -sulfonamide formic acid;
3-[3-[[cyclopropyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-5-[4-[[4-[4-[[2-(2,6- dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin-l-yl]methyl]phenyl]- lH-pyrrolo[2,3-b]pyridine formic acid;
5-[6-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]-lH-pynOlo[2,3-b]pyridine; 5-[6-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]butanoyl]piperazin- l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH- pyrrolo[2,3-b]pyridine;
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]oxypiperidine-l- carbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[4-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclohexanecarbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]methyl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]methyl]-3-pyridyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]pyrrolidin-3- yl]acetyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]azetidin-3- yl]propanoyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l-yl]-3- pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3- bjpyridine;
5-[6-[4-[2-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]oxy-l- piperidyl]acetyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine; 5-[6-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]piperidine-l- carbonyl]piperazin-l-yl]-3-pyridyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-lH-pyrrolo[2,3-b]pyridine;
N-[3-[5-[6-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]-3-pyridyl]-lH-pyrrolo[2,3-b]pyridine-3- carbonyl]-2,4-difluoro-phenyl]butane-2-sulfonamide;
5-[2-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l- yl]pyrimidin-5-yl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH- pyrrolo[2,3-b]pyridine;
5-[4-[[4-[l-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4-piperidyl]acetyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[l-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]piperidine-4-carbonyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[[4-[l-[2-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-5-yl]-4-piperidyl]acetyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[4-[3-[l-[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]-4- piperidyl]propanoyl]piperazin-l-yl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6- difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[4-[3-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4- yl]amino]cyclobutanecarbonyl]piperazin-l-yl]phenyl]-3-[3-
[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3-b]pyridine;
5-[4-[4-[4-[2-(2,6-dioxo-3-piperidyl)-l-oxo-isoindolin-4-yl]oxybutanoyl]piperazin-l- yl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro-benzoyl]-lH-pyrrolo[2,3- bjpyridine; and
5-[4-[[4-[l-[6-[[2-(2,6-dioxo-3-piperidyl)-l,3-dioxo-isoindolin-4-yl]amino]hexanoyl]-4- piperidyl]piperazin-l-yl]methyl]phenyl]-3-[3-[[ethyl(methyl)sulfamoyl]amino]-2,6-difluoro- b enzoyl] - 1 H-pyrrolo [2, 3 -b ] pyri dine .
16. A compound according to any one of claims 1 to 15, or a pharmaceutically acceptable salt thereof, for use as therapeutically active substance.
17. A pharmaceutical composition comprising a compound according to any one of claims 1 to 15, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.
18. The use of a compound according to any one of claims 1 to 15, or a pharmaceutically acceptable salt thereof, for the therapeutic and/or prophylactic treatment of cancer.
19. A compound according to any one of claims 1 to 15, or a pharmaceutically acceptable salt thereof, for use in the treatment and/or prophylaxis of cancer.
20. The use of a compound according to any one of claims 1 to 15, or a pharmaceutically acceptable salt thereof, for the preparation of a medicament for the therapeutic and/or prophylactic treatment of cancer.
21. A method for the therapeutic and/or prophylactic treatment of cancer, which method comprises administering an effective amount of a compound according to any one of claims 1 to 15, or a pharmaceutically acceptable salt thereof.
22. The invention as hereinbefore described.
PCT/EP2021/066526 2020-06-19 2021-06-18 Heterobifunctional compounds as degraders of braf WO2021255213A1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
EP20180966 2020-06-19
EP20180966.2 2020-06-19

Publications (1)

Publication Number Publication Date
WO2021255213A1 true WO2021255213A1 (en) 2021-12-23

Family

ID=71111258

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2021/066526 WO2021255213A1 (en) 2020-06-19 2021-06-18 Heterobifunctional compounds as degraders of braf

Country Status (1)

Country Link
WO (1) WO2021255213A1 (en)

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023025091A1 (en) * 2021-08-24 2023-03-02 Biofront Ltd (Cayman) Hpk1 degraders, compositions thereof, and methods of using the same
WO2024073507A1 (en) 2022-09-28 2024-04-04 Theseus Pharmaceuticals, Inc. Macrocyclic compounds and uses thereof
US11957759B1 (en) 2022-09-07 2024-04-16 Arvinas Operations, Inc. Rapidly accelerated fibrosarcoma (RAF) degrading compounds and associated methods of use

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2018119448A1 (en) * 2016-12-23 2018-06-28 Arvinas, Inc. Compounds and methods for the targeted degradation of rapidly accelerated fibrosarcoma polypeptides
WO2020051564A1 (en) * 2018-09-07 2020-03-12 Arvinas Operations, Inc. Polycyclic compounds and methods for the targeted degradation of rapidly accelerated fibrosarcoma polypeptides

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2018119448A1 (en) * 2016-12-23 2018-06-28 Arvinas, Inc. Compounds and methods for the targeted degradation of rapidly accelerated fibrosarcoma polypeptides
WO2020051564A1 (en) * 2018-09-07 2020-03-12 Arvinas Operations, Inc. Polycyclic compounds and methods for the targeted degradation of rapidly accelerated fibrosarcoma polypeptides

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
HAN XIAO-RAN ET AL: "Discovery of Selective Small Molecule Degraders of BRAF-V600E", JOURNAL OF MEDICINAL CHEMISTRY, vol. 63, no. 8, 23 April 2020 (2020-04-23), pages 4069 - 4080, XP055802838, ISSN: 0022-2623, DOI: 10.1021/acs.jmedchem.9b02083 *
HAN XIAO-RAN ET AL: "S1 SUPPORTING INFORMATION Discovery of Selective Small Molecule Degraders of BRAF-V600E", 30 March 2020 (2020-03-30), XP055829798, Retrieved from the Internet <URL:https://pubs.acs.org/doi/suppl/10.1021/acs.jmedchem.9b02083/suppl_file/jm9b02083_si_001.pdf> [retrieved on 20210803] *

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023025091A1 (en) * 2021-08-24 2023-03-02 Biofront Ltd (Cayman) Hpk1 degraders, compositions thereof, and methods of using the same
US11957759B1 (en) 2022-09-07 2024-04-16 Arvinas Operations, Inc. Rapidly accelerated fibrosarcoma (RAF) degrading compounds and associated methods of use
WO2024073507A1 (en) 2022-09-28 2024-04-04 Theseus Pharmaceuticals, Inc. Macrocyclic compounds and uses thereof

Similar Documents

Publication Publication Date Title
JP6779992B2 (en) N-sulfonylated pyrazolo [3,4-b] pyridine-6-carboxamide and usage
AU2020250185B2 (en) Pyridine carbonyl derivatives and therapeutic uses thereof as TRPC6 inhibitors
JP6242885B2 (en) 5-azaindazole compounds and methods of use
WO2021255213A1 (en) Heterobifunctional compounds as degraders of braf
AU2019294414B2 (en) Compounds
EP3405196B1 (en) New substituted cyanoindoline derivatives as nik inhibitors
CN111615512A (en) Compounds causing EGFR degradation for anticancer
JP2022527216A (en) Ikaros and Ailos tricyclic degradation inducers
CN111491933A (en) EGFR bifunctional inhibitors with E3 ubiquitin ligase moiety
EP3558967A1 (en) 2-benzopyrazinyl-n-heteroaryl-2-phenyl-acetamide compounds
EP3405464B1 (en) New 6-membered heteroaromatic substituted cyanoindoline derivatives as nik inhibitors
AU2015266453C1 (en) Alk kinase inhibitor, and preparation method and use thereof
EP3027598B1 (en) Oxoquinazolinyl-butanamide derivatives
AU2017208998A1 (en) Bruton&#39;s tyrosine kinase inhibitors
CN114728936A (en) Bifunctional compounds for the treatment of cancer
US20230145336A1 (en) Braf degraders
JP2021527100A (en) Piridinyl heterocyclyl compounds for the treatment of autoimmune diseases
AU2018312836A1 (en) Novel heterocyclic compounds as CDK8/19 inhibitors
KR20160098500A (en) Fluoro-naphthyl derivatives
KR20190026917A (en) Aminopyridine derivatives and their use as selective ALK-2 inhibitors
US20150274733A1 (en) Dihydropyrrolidino-pyrimidines as kinase inhibitors
TWI833773B (en) Compounds
CN116848115A (en) Wnt pathway inhibitor compounds

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 21733123

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 21733123

Country of ref document: EP

Kind code of ref document: A1