一种靶向线粒体G-四链体DNA的荧光探针及其制备方法和应用Fluorescent probe targeting mitochondrial G-quadruplex DNA, preparation method and application thereof
技术领域Technical field
本发明涉及G-四链体DNA检测技术领域,更具体地,涉及一种靶向线粒体G-四链体DNA的荧光探针及其制备方法和应用。The present invention relates to the technical field of G-quadruplex DNA detection, and more specifically, to a fluorescent probe targeting mitochondrial G-quadruplex DNA, and a preparation method and application thereof.
背景技术Background technique
G-四链体(G-quadruplex)DNA是由富含鸟嘌呤的核酸序列通过hoogsteen氢键首先形成G-四分体,G-四分体进一步堆积折叠形成G-四链体DNA。生物信息学分析发现,人类基因组中约有37万个具有形成G-四链体可能性的序列,包括端粒末端鸟嘌呤重复序列启动子区、核糖体DNA(rDNA)、转录起始位点(TSS)、非翻译区(UTR)等区域,预示着G-四链体在人类基因组和转录组中扮演着重要的角色,参与了许多重要生命过程的调控。近十年来,对G-四链体的研究主要集中于核DNA G-四链体;近年的研究发现线粒体DNA同样能形成G-四链体结构,然而对线粒体G-四链体DNA的生物学功能知之甚少。因此,在细胞内能够特异性地检测出线粒体G-四链体DNA的存在,对于研究线粒体G-四链体DNA相关生物学功能以及对阐明与线粒体受损有关的细胞功能障碍及疾病的发病机制有着重要的意义。G-quadruplex DNA is a G-quadruplex formed by guanine-rich nucleic acid sequences through hoogsteen hydrogen bonds, and the G-quadruplexes are further stacked and folded to form G-quadruplex DNA. Bioinformatics analysis found that there are about 370,000 sequences in the human genome that have the possibility of forming G-quadruplexes, including the guanine repeat promoter region at the end of the telomere, ribosomal DNA (rDNA), and transcription initiation site (TSS), untranslated region (UTR) and other regions indicate that the G-quadruplex plays an important role in the human genome and transcriptome, and participates in the regulation of many important life processes. In the past ten years, research on G-quadruplexes has mainly focused on nuclear DNA and G-quadruplex; recent studies have found that mitochondrial DNA can also form a G-quadruplex structure. Little is known about the function of learning. Therefore, the presence of mitochondrial G-quadruplex DNA can be specifically detected in the cell, which is useful for studying the biological functions of mitochondrial G-quadruplex DNA and for elucidating cell dysfunction and disease pathogenesis related to mitochondrial damage. The mechanism has important meaning.
目前,在细胞内能检测DNA G-四链体结构的研究取得了一些进展。已有一些荧光探针能够实现G-四链体DNA细胞内的检测。然而能够特异性识别线粒体G-四链体DNA的荧光探针未见报道。而且由于体内大大过量的其他核酸二级结构的存在,以及复杂的细胞内环境,使得细胞内特异性检测线粒体G-四链体DAN相对于核G-四链体DNA检测需要解决更多的难题。At present, some progress has been made in the research of detecting the structure of DNA G-quadruplex in cells. There are some fluorescent probes that can realize the detection of G-quadruplex DNA in cells. However, there are no reports on fluorescent probes that can specifically recognize mitochondrial G-quadruplex DNA. Moreover, due to the existence of a large excess of other nucleic acid secondary structures in the body and the complex intracellular environment, the specific detection of mitochondrial G-quadruplex DNA in the cell requires more problems than nuclear G-quadruplex DNA detection. .
因此,亟待于提供一种细胞内特异性识别线粒体G-四链体DNA的荧光探针。Therefore, it is urgent to provide a fluorescent probe that specifically recognizes mitochondrial G-quadruplex DNA in cells.
发明内容Summary of the invention
本发明的目的在于针对现有技术中缺少可特异性识别线粒体G-四链体DNA的荧光探针的不足,提供一种靶向线粒体G-四链体DNA的荧光探针。本发明所述荧光探针可在细胞内特异性的识别线粒体G-四链体DNA,而不受细胞内其他组分的干扰,特别是其他位置G-四链体结构的干扰,例如核G-四链体DNA、G-四链体RNA,进而能够准确的检测和实时示踪活细胞中线粒体G-四链体DNA。The purpose of the present invention is to provide a fluorescent probe targeting mitochondrial G-quadruplex DNA against the lack of fluorescent probes that can specifically recognize mitochondrial G-quadruplex DNA in the prior art. The fluorescent probe of the present invention can specifically recognize mitochondrial G-quadruplex DNA in the cell without being interfered by other components in the cell, especially the interference of the G-quadruplex structure at other locations, such as nuclear G -Quadruplex DNA and G-quadruplex RNA, which can accurately detect and trace mitochondrial G-quadruplex DNA in living cells in real time.
本发明的另一目的在于提供所述靶向线粒体G-四链体DNA的荧光探针的制备方法。Another object of the present invention is to provide a method for preparing the fluorescent probe targeting mitochondrial G-quadruplex DNA.
本发明的再一目的在于提供所述靶向线粒体G-四链体DNA的荧光探针的应用。Another object of the present invention is to provide the application of the fluorescent probe targeting mitochondrial G-quadruplex DNA.
本发明的上述目的是通过以下方案予以实现的:The above-mentioned objects of the present invention are achieved through the following schemes:
一种靶向线粒体G-四链体DNA的荧光探针,其结构如式(Ⅰ)所示:A fluorescent probe targeting mitochondrial G-quadruplex DNA, the structure of which is shown in formula (I):
其中,R
1为H、F、Cl、Br或I;R
2为-O(CH
2)
n三苯基磷,其中n为2~10中任意一个整数;R
3为N-甲基哌嗪、-NR
4R
5或-NH(CH
2)
mR
6,其中m为1~8中任意一个整数,R
4和R
5各自独立地为氢、C
1~8烷基或C
1~8卤代烷基,R
6为胺基、C
1~8烷胺基或C
1~8烷氧基取代胺基;A
-为N甲基化阴离子、卤离子、对甲苯磺酸离子或三氟甲磺酸离子。
Wherein, R 1 is H, F, Cl, Br or I; R 2 is -O(CH 2 ) n triphenylphosphonium, where n is any integer from 2 to 10; R 3 is N-methylpiperazine , -NR 4 R 5 or -NH(CH 2 ) m R 6 , where m is any integer from 1 to 8, and R 4 and R 5 are each independently hydrogen, C 1-8 alkyl or C 1-8 Halogenated alkyl group, R 6 is amino group, C 1-8 alkylamino group or C 1-8 alkoxy substituted amino group; A - is N-methylated anion, halide ion, p-toluenesulfonic acid ion or trifluoromethanesulfonate Acid ion.
优选地,所述R
2为-O(CH
2)
n三苯基磷,其中n为2~6中任意一个整数;R
3为N-甲基哌嗪、-NR
4R
5或-NH(CH
2)
mR
6,其中m为1~5中任意一个整数,R
4和R
5各自独立地为氢、C
1~4烷基或C
1~4卤代烷基,R
6为胺基、C
1~4烷胺基或C
1~4烷氧基取代胺基。
Preferably, the R 2 is -O(CH 2 ) n triphenylphosphonium, where n is any integer from 2 to 6; R 3 is N-methylpiperazine, -NR 4 R 5 or -NH( CH 2 ) m R 6 , where m is any integer from 1 to 5, R 4 and R 5 are each independently hydrogen, C 1-4 alkyl or C 1-4 haloalkyl, R 6 is an amino group, C 1-4 alkylamino groups or C 1-4 alkoxy substituted amino groups.
优选地,所述R
2为-O(CH
2)
n三苯基磷,其中n为2~6中任意一个整数;R
3为-NR
4R
5,R
4和R
5各自独立地为氢、C
1~4烷基或C
1~4卤代烷基。
Preferably, the R 2 is -O(CH 2 ) n triphenylphosphonium, wherein n is any integer from 2 to 6; R 3 is -NR 4 R 5 , R 4 and R 5 are each independently hydrogen , C 1-4 alkyl or C 1-4 haloalkyl.
优选地,所述R
2为-O(CH
2)
n三苯基磷,其中n为2~6中任意一个整数;所述R
3为-NR
4R
5,R
4和R
5各自独立地为氢、C
1~4烷基或C
1~4卤代烷基。
Preferably, the R 2 is -O(CH 2 ) n triphenylphosphonium, wherein n is any integer from 2 to 6; the R 3 is -NR 4 R 5 , R 4 and R 5 are each independently It is hydrogen, C 1-4 alkyl or C 1-4 haloalkyl.
优选地,所述R
2为-O(CH
2)
4三苯基磷。
Preferably, the R 2 is -O(CH 2 ) 4 triphenylphosphonium.
优选地,所述R
3为-NR
4R
5,R
4和R
5各自独立地为氢、甲基、乙基、丙基、三氟甲基或三氟乙基。
Preferably, the R 3 is -NR 4 R 5 , and R 4 and R 5 are each independently hydrogen, methyl, ethyl, propyl, trifluoromethyl or trifluoroethyl.
优选地,所述A
-为卤离子、对甲苯磺酸离子或三氟甲磺酸离子。
Preferably, the A - is a halide ion, a p-toluenesulfonate ion or a trifluoromethanesulfonate ion.
优选地,所述荧光探针的结构如下结构之一所示:Preferably, the structure of the fluorescent probe is as shown in one of the following structures:
本发明同时还保护所述靶向线粒体G-四链体DNA的荧光探针的制备方法,包括如下步骤:The present invention also protects the preparation method of the fluorescent probe targeting mitochondrial G-quadruplex DNA, including the following steps:
S1.2-吡咯烷酮与式2化合物在三氯氧磷存在条件下反应,得式3化合物;S1.2-pyrrolidone reacts with a compound of formula 2 in the presence of phosphorus oxychloride to obtain a compound of formula 3;
S2.式3化合物在甲醇钠在甲醇作用下反应,得式4化合物;再脱去甲基,得式5化合物;S2. The compound of formula 3 is reacted with sodium methoxide under the action of methanol to obtain the compound of formula 4; then the methyl group is removed to obtain the compound of formula 5;
S3.式5化合物与Br(CH
2)
n Br发生取代反应,得式6化合物,然后再与三苯基磷发生取代反应,得式7化合物;
S3. The compound of formula 5 undergoes a substitution reaction with Br(CH 2 ) n Br to obtain a compound of formula 6, and then it undergoes a substitution reaction with triphenylphosphonium to obtain a compound of formula 7;
S4.式7化合物与甲基化试剂反应,得式8化合物,然后与式9化合物反应,制备得到式(Ⅰ)化合物;S4. The compound of formula 7 is reacted with the methylating reagent to obtain the compound of formula 8, and then the compound of formula 9 is reacted to prepare the compound of formula (I);
其中式2至式9化合物的结构如下所示,其中n为2~10中任意一个整数;The structures of the compounds of formula 2 to formula 9 are shown below, where n is any integer from 2 to 10;
所述靶向线粒体G-四链体DNA的荧光探针在检测线粒体G-四链体DNA中的应用也在本发明的保护范围之内。The application of the fluorescent probe targeting mitochondrial G-quadruplex DNA in detecting mitochondrial G-quadruplex DNA is also within the protection scope of the present invention.
与现有技术相比,本发明具有以下有益效果:Compared with the prior art, the present invention has the following beneficial effects:
本发明提供的荧光探针在活细胞内可以特异性地检测识别线粒体G-四链体 DNA结构,检测过程不受其他组分的干扰;同时所述荧光探针具有较好的化学稳定性、光稳定性,较好的溶解性和生物兼容性,制备过程简单、成本低廉在线粒体G-四链体DNA生物学功能研究上具有广阔的应用空间。The fluorescent probe provided by the present invention can specifically detect and recognize the structure of mitochondrial G-quadruplex DNA in living cells, and the detection process is not interfered by other components; at the same time, the fluorescent probe has good chemical stability, Light stability, good solubility and biocompatibility, simple preparation process and low cost have broad application space in the study of the biological function of mitochondrial G-quadruplex DNA.
附图说明Description of the drawings
图1为荧光探针MitoISCH-1在Tris-盐酸缓冲液的紫外可见吸收光谱。Figure 1 shows the UV-Vis absorption spectrum of the fluorescent probe MitoISCH-1 in Tris-hydrochloric acid buffer.
图2为向荧光探针MitoISCH-1在Tris-HCl缓冲溶液中滴加不同量的线粒体G-四链体DNA Mito27的紫外可见吸收光谱。其中,荧光探针的浓度为5μM。Figure 2 shows the UV-Vis absorption spectrum of MitoISCH-1, a fluorescent probe MitoISCH-1, in the Tris-HCl buffer solution with different amounts of mitochondrial G-quadruplex DNA Mito27. Among them, the concentration of the fluorescent probe is 5 μM.
图3为荧光探针MitoISCH-1中滴加不同线粒体DNA样品的荧光光谱图。其中,荧光探针的浓度为1μM,线粒体DNA样品的浓度为3μM。Figure 3 shows the fluorescence spectra of different mitochondrial DNA samples dropped into the fluorescent probe MitoISCH-1. Among them, the concentration of the fluorescent probe is 1 μM, and the concentration of the mitochondrial DNA sample is 3 μM.
图4为荧光探针MitoISCH-1在Tris-HCl缓冲溶液中滴加不同线粒体DNA样品的荧光滴定曲线。其中,荧光探针的浓度为1μM。Figure 4 shows the fluorescence titration curve of the fluorescent probe MitoISCH-1 dripped with different mitochondrial DNA samples in the Tris-HCl buffer solution. Among them, the concentration of the fluorescent probe is 1 μM.
图5为荧光探针MitoISCH-1检测活细胞内线粒体G-四链体DNA的激光共聚焦显微成像。Figure 5 shows the confocal laser confocal microscopy imaging of the fluorescent probe MitoISCH-1 to detect mitochondrial G-quadruplex DNA in living cells.
具体实施方式Detailed ways
下面结合具体实施例对本发明做出进一步地详细阐述,所述实施例只用于解释本发明,并非用于限定本发明的范围。下述实施例中所使用的试验方法如无特殊说明,均为常规方法;所使用的材料、试剂等,如无特殊说明,为可从商业途径得到的试剂和材料。The present invention will be further elaborated below in conjunction with specific embodiments, which are only used to explain the present invention and not used to limit the scope of the present invention. The test methods used in the following examples are conventional methods unless otherwise specified; the materials and reagents used, unless otherwise specified, are commercially available reagents and materials.
实施例1 化合物MitoISCH-1,MitoISCH-2,MitoISCH-3的合成Example 1 Synthesis of Compound MitoISCH-1, MitoISCH-2, MitoISCH-3
化合物MitoISCH-1,MitoISCH-2,MitoISCH-3的具体制备过程如下:The specific preparation process of the compounds MitoISCH-1, MitoISCH-2 and MitoISCH-3 is as follows:
(1)取10g 2-氨基-4,5-二氟苯甲酸和18g 2-吡咯烷酮溶于150mL干燥甲苯中,搅拌至充分溶解后;室温下,缓慢滴加35mL POCl
3。室温下搅拌5h。旋蒸出甲苯和三氯氧磷,将浓缩液倒入冰水中,调节pH至弱碱性,析出大量白色固体。抽滤干燥得10.47g白色固体,即化合物(a)。
(1) Take 10 g of 2-amino-4,5-difluorobenzoic acid and 18 g of 2-pyrrolidone and dissolve them in 150 mL of dry toluene, stir until fully dissolved; at room temperature, slowly add 35 mL of POCl 3 dropwise. Stir at room temperature for 5h. The toluene and phosphorus oxychloride were spun off by rotary evaporation, and the concentrated liquid was poured into ice water, the pH was adjusted to weakly alkaline, and a large amount of white solid was precipitated. It was filtered and dried to obtain 10.47 g of white solid, namely compound (a).
(2)取5g化合物(a)和5g甲醇钠溶于50mL甲醇中,60℃回流反应24h,冷却至室温,减压抽滤,蒸干滤液得4.6g白色固体,即化合物(b)。(2) Dissolve 5 g of compound (a) and 5 g of sodium methoxide in 50 mL of methanol, reflux for 24 hours at 60°C, cool to room temperature, filter under reduced pressure, and evaporate the filtrate to obtain 4.6 g of white solid, namely compound (b).
(3)取4g化合物(b)溶于20mL冰乙酸和20mL氢溴酸,加热140℃回流反应48h,抽滤,蒸干滤液得3.4g白色固体,即化合物(c)。(3) Dissolve 4 g of compound (b) in 20 mL of glacial acetic acid and 20 mL of hydrobromic acid, heat to reflux at 140°C for 48 hours, filter with suction, and evaporate the filtrate to obtain 3.4 g of white solid, namely compound (c).
(4)将2g化合物(c),2.5g碳酸钾和2.4mL 1,4-二溴丁烷溶于40mL丙酮,60℃回流搅拌24h,减压抽滤,蒸干滤液。以甲醇︰二氯甲烷(体积比1︰250)为洗脱剂通过硅胶层析纯化,分离得到2.8g白色固体,即化合物(d)。(4) Dissolve 2g of compound (c), 2.5g of potassium carbonate and 2.4mL of 1,4-dibromobutane in 40mL of acetone, reflux and stir at 60°C for 24h, filter under reduced pressure, and evaporate the filtrate. Purified by silica gel chromatography using methanol: dichloromethane (volume ratio 1:250) as the eluent, and separated to obtain 2.8 g of white solid, namely compound (d).
(5)将1g化合物(d)和1.3g三苯基膦溶于20mL乙腈中,90℃回流搅拌24h。冷却至室温,蒸干乙腈,以甲醇︰二氯甲烷(体积比1︰50)为洗脱剂通过硅胶层析纯化,分离得到1.4g白色固体,即化合物(e)。(5) Dissolve 1g of compound (d) and 1.3g of triphenylphosphine in 20mL of acetonitrile, and stir at 90°C under reflux for 24h. After cooling to room temperature, the acetonitrile was evaporated to dryness, and purified by silica gel chromatography using methanol: dichloromethane (volume ratio 1:50) as the eluent to obtain 1.4 g of white solid, namely compound (e).
(6)将0.5合物(e)溶于2mL乙腈中,加入1mL碘甲烷,70℃下反应(6) Dissolve 0.5 compound (e) in 2mL acetonitrile, add 1mL methyl iodide, and react at 70℃
24h,冷至室温,抽滤,用无水乙醚洗后真空干燥得0.5g浅黄色固体,即化合物(f)。After 24h, cooled to room temperature, filtered with suction, washed with anhydrous ether and dried in vacuo to obtain 0.5 g of light yellow solid, namely compound (f).
(7)将0.4g即化合物(f)和0.18g 7-(二乙基氨基)香豆素醛溶于20mL乙醇中,加入催化量的哌啶,90℃回流搅拌过夜。冷却至室温,蒸干乙醇,以甲醇︰二氯甲烷(体积比1︰25)为洗脱剂通过硅胶层析纯化,分离得到0.37g棕褐色固体,即化合物(MitoISCH-1)。(7) Dissolve 0.4 g of compound (f) and 0.18 g of 7-(diethylamino) coumarin aldehyde in 20 mL of ethanol, add a catalytic amount of piperidine, and stir at 90°C under reflux overnight. Cool to room temperature, evaporate ethanol, and purify by silica gel chromatography using methanol: dichloromethane (volume ratio 1:25) as eluent to obtain 0.37 g of tan solid, namely compound (MitoISCH-1).
(8)将0.4g即化合物(f)和0.18g 7-氨基-香豆素醛溶于20mL乙醇中,加入催化量的哌啶,90℃回流搅拌过夜。冷却至室温,蒸干乙醇,以甲醇︰二氯甲烷(体积比1︰20)为洗脱剂通过硅胶层析纯化,分离得到0.32g棕褐色固体,即化合物(MitoISCH-2)。(8) Dissolve 0.4 g of compound (f) and 0.18 g of 7-amino-coumarin aldehyde in 20 mL of ethanol, add a catalytic amount of piperidine, and stir at 90°C under reflux overnight. Cool to room temperature, evaporate ethanol, and purify by silica gel chromatography using methanol: dichloromethane (volume ratio 1:20) as eluent to obtain 0.32 g of tan solid, namely compound (MitoISCH-2).
(9)将0.4g即化合物(f)和0.18g 7-(甲基哌嗪)-香豆素醛溶于20mL乙醇中,加入催化量的哌啶,90℃回流搅拌过夜。冷却至室温,蒸干乙醇,以甲醇︰二氯甲烷(体积比1︰15)为洗脱剂通过硅胶层析纯化,分离得到0.28g棕褐色固体,即化合物(MitoISCH-3)。(9) Dissolve 0.4 g of compound (f) and 0.18 g of 7-(methylpiperazine)-coumarin aldehyde in 20 mL of ethanol, add a catalytic amount of piperidine, and stir at 90°C under reflux overnight. Cool to room temperature, evaporate ethanol, and purify by silica gel chromatography using methanol: dichloromethane (volume ratio 1:15) as eluent to obtain 0.28 g of tan solid, namely compound (MitoISCH-3).
化合物MitoISCH-1的结构和核磁共振氢谱数据如下所示:The structure and proton nuclear magnetic resonance data of compound MitoISCH-1 are shown below:
1H NMR(400MHz,MeOD)δ8.21(s,1H),8.05–8.01(m,2H),7.92–7.71(m,15H),7.60(d,J=9.1Hz,1H),7.52(d,J=6.7Hz,1H),6.85(dd,J=9.1,2.3Hz,1H),6.61(d,J=2.1Hz,1H),4.48(t,J=5.8Hz,2H),4.39–4.32(m,5H),3.65-3.52(m,6H),3.48–3.41(m,2H),2.24-2.15(m,2H),2.03-1.91(m,2H),1.25(t,J=7.1Hz,6H).
13C NMR(126MHz, DMSO)δ160.00,159.03,156.64,155.84(d,J
C,F=2.3Hz),153.02(d,J
C,F=12.1Hz),152.51,150.94(d,J
C,F=251.6Hz),144.77,139.03,138.46,134.62(d,
4J
C,P=2.9Hz,3C),133.21(d,
2J
C,P=10.1Hz,6C),131.37,129.93(d,
3J
C,P=12.5Hz,6C),126.68,118.12(d,
1J
C,P=85.7Hz,3C),112.73,112.53(d,J
C,F=21.0Hz),112.02(d,J
C,F=7.5Hz),110.13,108.21,104.31,96.31,68.81,46.38,44.18(2C),40.93,28.54(d,
2J
C,P=16.8Hz),27.32,20.12(d,
1J
C,P=50.7Hz),18.22(d,
3J
C,P=3.7Hz),12.06(2C).
19F NMR(376 MHz,DMSO)δ-131.36.
31P NMR(162 MHz,DMSO)δ24.06.Purity:99.4%by HPLC.HRMS(ESI):calcd for[(M-2I)/2]
2+389.6639,found 389.6626.
1 H NMR(400MHz,MeOD)δ8.21(s,1H), 8.05–8.01(m,2H), 7.92–7.71(m,15H), 7.60(d,J=9.1Hz,1H), 7.52(d ,J=6.7Hz,1H), 6.85(dd,J=9.1,2.3Hz,1H), 6.61(d,J=2.1Hz,1H), 4.48(t,J=5.8Hz,2H), 4.39–4.32 (m,5H),3.65-3.52(m,6H),3.48–3.41(m,2H),2.24-2.15(m,2H),2.03-1.91(m,2H),1.25(t,J=7.1Hz ,6H). 13 C NMR (126MHz, DMSO) δ 160.00, 159.03, 156.64, 155.84 (d, J C, F = 2.3Hz), 153.02 (d, J C, F = 12.1Hz), 152.51, 150.94 (d, J C,F =251.6Hz),144.77,139.03,138.46,134.62(d, 4 J C,P =2.9Hz,3C),133.21(d, 2 J C,P =10.1Hz,6C),131.37,129.93 (d, 3 J C, P = 12.5Hz, 6C), 126.68, 118.12(d, 1 J C, P = 85.7Hz, 3C), 112.73, 112.53(d, J C, F = 21.0Hz), 112.02( d,J C,F =7.5Hz),110.13,108.21,104.31,96.31,68.81,46.38,44.18(2C),40.93,28.54(d, 2 J C,P =16.8Hz),27.32,20.12(d, 1 J C, P = 50.7 Hz), 18.22 (d, 3 J C, P = 3.7 Hz), 12.06 (2C). 19 F NMR (376 MHz, DMSO)δ-131.36. 31 P NMR (162 MHz, DMSO )δ24.06.Purity:99.4% by HPLC.HRMS(ESI):calcd for[(M-2I)/2] 2+ 389.6639,found 389.6626.
1H NMR(400 MHz,MeOD)δ8.23(s,1H),8.04–8.02(m,2H),7.94–7.70(m,15H),7.63(d,J=9.0Hz,1H),7.51(d,J=6.8Hz,1H),6.85(dd,J=9.0,2.4Hz,1H),6.63(d,J=2.2Hz,1H),4.45(t,J=5.6Hz,2H),4.39–4.32(m,5H),3.90(s,2H),3.65-3.52(m,2H),3.47–3.41(m,2H),2.25-2.13(m,2H),2.03-1.91(m,2H).
13C NMR(126 MHz,DMSO)δ160.05,159.01,156.62,155.83(d,J
C,F=2.4Hz),153.03(d,J
C,F=12.3Hz),152.52,150.96(d,J
C,F=251.8Hz),144.72,139.02,138.44,134.61(d,
4J
C,P=2.9Hz,3C),133.22(d,
2J
C,P=10.2Hz,6C),131.36,129.94(d,
3J
C,P=12.6Hz,6C),126.67,118.14(d,
1J
C,P=85.8Hz,3C),112.74,112.51(d,J
C,F=21.1Hz),112.03(d,J
C,F=7.6Hz),110.12,108.23,104.34,96.33,68.80,46.36,40.91,28.52(d,
2J
C,P=16.8Hz),27.34,20.15(d,
1J
C,P=50.7Hz),18.23(d,
3J
C,P=3.8Hz).
19F NMR(376 MHz,DMSO)δ-131.20.
31P NMR(162 MHz,DMSO)δ24.00.Purity:98.2%by HPLC.HRMS(ESI):calcd for[(M-2I)/2]
2+361.6325,found 361.6332.
1 H NMR (400 MHz, MeOD) δ 8.23 (s, 1H), 8.04-8.02 (m, 2H), 7.94-7.70 (m, 15H), 7.63 (d, J = 9.0 Hz, 1H), 7.51 ( d,J=6.8Hz,1H), 6.85(dd,J=9.0,2.4Hz,1H), 6.63(d,J=2.2Hz,1H), 4.45(t,J=5.6Hz,2H), 4.39- 4.32 (m, 5H), 3.90 (s, 2H), 3.65-3.52 (m, 2H), 3.47-3.41 (m, 2H), 2.25-2.13 (m, 2H), 2.03-1.91 (m, 2H). 13 C NMR (126 MHz, DMSO) δ 160.05 , 159.01, 156.62, 155.83 (d, J C, F = 2.4 Hz), 153.03 (d, J C, F = 12.3 Hz), 152.52, 150.96 (d, J C, F = 251.8 Hz), 144.72, 139.02, 138.44, 134.61 (d, 4 J C, P = 2.9 Hz, 3C), 133.22 (d, 2 J C, P = 10.2 Hz, 6C), 131.36, 129.94 (d, 3 J C,P =12.6Hz,6C),126.67,118.14(d, 1 J C,P =85.8Hz,3C),112.74,112.51(d,J C,F =21.1Hz),112.03(d,J C,F =7.6Hz),110.12,108.23,104.34,96.33,68.80,46.36,40.91,28.52(d, 2 J C,P = 16.8Hz), 27.34, 20.15(d, 1 J C,P = 50.7Hz ), 18.23 (d, 3 J C, P = 3.8 Hz). 19 F NMR (376 MHz, DMSO) δ-131.20. 31 P NMR (162 MHz, DMSO) δ 24.00. Purity: 98.2% by HPLC.HRMS (ESI):calcd for[(M-2I)/2] 2+ 361.6325,found 361.6332.
1H NMR(400 MHz,MeOD)δ8.23(s,1H),8.03–8.02(m,2H),7.91–7.70(m,15H),7.61(d,J=9.0Hz,1H),7.50(d,J=6.6Hz,1H),6.86(dd,J=9.0,2.4Hz,1H),6.63(d,J=2.2Hz,1H),4.47(t,J=5.8Hz,2H),4.40–4.33(m,5H),3.67-3.51(m,6H),3.49–3.40(m,2H),2.39-2.30(m,4H),2.26-2.14(m,2H),2.22(s,3H),2.03-1.91(m,2H).
13C NMR(126MHz,DMSO)δ160.07,159.05,156.56,155.79(d,J
C,F=2.5Hz),153.13(d,J
C,F=12.3Hz),152.59,150.83(d,J
C,F=251.7Hz),144.68,139.13,138.53,134.67(d,
4J
C,P=3.0Hz, 3C),133.25(d,
2J
C,P=10.3Hz,6C),131.43,129.86(d,
3J
C,P=12.8Hz,6C),126.69,118.23(d,
1J
C,P=85.9Hz,3C),112.79,112.59(d,J
C,F=21.3Hz),112.13(d,J
C,F=7.8Hz),110.17,108.21,104.38,96.30,68.89,46.43,46.08,44.21(2C),40.87,28.59(d,
2J
C,P=16.9Hz),27.39,20.19(d,
1J
C,P=50.7Hz),18.27(d,
3J
C,P=3.8Hz),12.06(2C).
19F NMR(376MHz,DMSO)δ-131.42.
31P NMR(162MHz,DMSO)δ24.09.Purity:95.8%by HPLC.HRMS(ESI):calcd for[(M-2I)/2]
2+403.1693,found 403.1686.
1 H NMR (400 MHz, MeOD) δ 8.23 (s, 1H), 8.03-8.02 (m, 2H), 7.91-7.70 (m, 15H), 7.61 (d, J = 9.0 Hz, 1H), 7.50 ( d,J=6.6Hz,1H), 6.86(dd,J=9.0,2.4Hz,1H), 6.63(d,J=2.2Hz,1H), 4.47(t,J=5.8Hz,2H), 4.40– 4.33 (m, 5H), 3.67-3.51 (m, 6H), 3.49-3.40 (m, 2H), 2.39-2.30 (m, 4H), 2.26-2.14 (m, 2H), 2.22 (s, 3H), 2.03-1.91 (m, 2H). 13 C NMR (126MHz, DMSO) δ 160.07, 159.05, 156.56, 155.79 (d, J C, F = 2.5 Hz), 153.13 (d, J C, F = 12.3 Hz), 152.59 ,150.83(d,J C,F =251.7Hz),144.68,139.13,138.53,134.67(d, 4 J C,P =3.0Hz, 3C),133.25(d, 2 J C,P =10.3Hz,6C ),131.43,129.86(d, 3 J C, P = 12.8Hz, 6C), 126.69, 118.23(d, 1 J C, P = 85.9Hz, 3C), 112.79, 112.59(d, J C, F = 21.3 Hz),112.13(d,J C,F =7.8Hz),110.17,108.21,104.38,96.30,68.89,46.43,46.08,44.21(2C),40.87,28.59(d, 2 J C,P =16.9Hz) , 27.39, 20.19 (d, 1 J C, P = 50.7 Hz), 18.27 (d, 3 J C, P = 3.8 Hz), 12.06 (2C). 19 F NMR (376MHz, DMSO) δ-131.42. 31 P NMR(162MHz,DMSO)δ24.09.Purity:95.8% by HPLC.HRMS(ESI):calcd for[(M-2I)/2] 2+ 403.1693,found 403.1686.
实施例2 性能测试实验Example 2 Performance test experiment
以荧光探针MitoISCH-1为代表,检测荧光探针MitoISCH-1识别线粒体G-四链体DNA的性能。Take the fluorescent probe MitoISCH-1 as a representative to test the performance of the fluorescent probe MitoISCH-1 to recognize mitochondrial G-quadruplex DNA.
一、测试荧光探针MitoISCH-1对线粒体G-四链体DNA的体外识别作用1. Test the in vitro recognition effect of the fluorescent probe MitoISCH-1 on mitochondrial G-quadruplex DNA
测试的线粒体DNA样品序列包括:The sequence of the mitochondrial DNA sample tested includes:
Mito27:5’-(AGGTCGGGGCGGTGATGTAGAGGGTGATGGT)-3’Mito27: 5’-(AGGTCGGGGCGGTGATGTAGAGGGTGATGGT)-3’
Mito160:Mito160:
5’-GGGCTTGATGTGGGGAGGGGTGTTTAAGGGGTTGGCTAGGGTATAATTGT5’-GGGCTTGATGTGGGGAGGGGTGTTTAAGGGGTTGGCTAGGGTATAATTGT
CTGGG-3’CTGGG-3’
Mito27mut:5’-AGGTCGAAGCGGTGATGTAGAGAGTGATAGT-3’Mito27mut: 5’-AGGTCGAAGCGGTGATGTAGAGAGTGATAGT-3’
Mito160mut:Mito160mut:
5’-GAGCTTGATGTGAAGAGAAGTGTTTAAGAAGTTGGCTAGAGTATAATTGT5’-GAGCTTGATGTGAAGAGAAGTGTTTAAGAAGTTGGCTAGAGTATAATTGT
CTGAG-3’CTGAG-3’
MitoHP19:MitoHP19:
5’-CAGTATCTGTCTTTGATTCTTTTTTGAATCAAAGACAGATACTG-3’5’-CAGTATCTGTCTTTGATTCTTTTTTGAATCAAAGACAGATACTG-3’
其中,Mito27、Mito160为线粒体G-四链体DNA结构,MitoHP19是线粒体双链DNA结构,Mito27mut和Mito160为单链DNA结构。DNA样品购自上海生工。将DNA样品适量溶于Tris-HCl的缓冲液中(PH7.4,10mM Tris,100mM KCl),超微量紫外定浓,在95℃下加热5min后缓慢冷却退火到室温作为储存液,4℃储存待用。Among them, Mito27 and Mito160 are mitochondrial G-quadruplex DNA structures, MitoHP19 is a mitochondrial double-stranded DNA structure, Mito27mut and Mito160 are single-stranded DNA structures. DNA samples were purchased from Shanghai Shenggong. Dissolve an appropriate amount of DNA sample in Tris-HCl buffer (pH7.4, 10mM Tris, 100mM KCl), set ultra-micro UV concentration, heat at 95℃ for 5min, slowly cool and anneal to room temperature as storage solution, store at 4℃ stand-by.
以化合物MitoISCH-1为测试荧光探针,将其用二甲基亚砜溶解,配成10mM的储存液,再用Tris-HCl的缓冲液中(pH 7.4,10mM Tris,100mM KCl)分别稀释成5uM或1uM浓度的荧光探针溶液用于测试。Take compound MitoISCH-1 as the test fluorescent probe, dissolve it in dimethyl sulfoxide to prepare a 10mM stock solution, and then dilute it into a Tris-HCl buffer (pH 7.4, 10mM Tris, 100mM KCl). A fluorescent probe solution with a concentration of 5uM or 1uM is used for testing.
(1)将配置好的荧光5uM探针溶液进行吸光度测试,结果如图1所示,荧光探针MitoISCH-1在525nm左右有最大紫外吸收强度。(1) Test the absorbance of the configured fluorescent 5uM probe solution. As shown in Figure 1, the fluorescent probe MitoISCH-1 has a maximum ultraviolet absorption intensity at about 525nm.
(2)以Mito27为测试线粒体G-四链体DNA,向配置好的5uM的荧光探针MitoISCH-1的缓冲溶液中滴加Mito27线粒体G-四链体DNA,随着滴加量的增加,混合液的吸光度结果如图2所示。(2) Using Mito27 as the test mitochondrial G-quadruplex DNA, add Mito27 mitochondrial G-quadruplex DNA to the prepared 5uM fluorescent probe MitoISCH-1 buffer solution. As the amount of drop increases, The absorbance results of the mixed solution are shown in Figure 2.
测试结果为:荧光探针MitoISCH-1的最大紫外吸收峰由530nm处红移至600nm左右,并且在570nm处出现等色点。The test result is: the maximum ultraviolet absorption peak of the fluorescent probe MitoISCH-1 is red-shifted from 530nm to about 600nm, and an isochromatic point appears at 570nm.
(3)分别向1uM的荧光探针MitoISCH-1的缓冲溶液中滴加上述不同的线粒体DNA样品,DNA的终浓度为3uM,检测荧光探针MitoISCH-1中加入不同线粒体DNA后的荧光强度,测试结果如图3所示。(3) Drop the above-mentioned different mitochondrial DNA samples into the 1uM fluorescent probe MitoISCH-1 buffer solution respectively, the final concentration of DNA is 3uM, and detect the fluorescence intensity after adding different mitochondrial DNA to the fluorescent probe MitoISCH-1, The test result is shown in Figure 3.
测试结果为荧光探针MitoISCH-1对线粒体G-四链体DNA(Mito27,Mito160)的荧光响应明显高于其他核酸二级结构。由此可见,荧光探针MitoISCH-1能够特异性识别线粒体G-四链体DNA结构。The test result is that the fluorescence response of the fluorescent probe MitoISCH-1 to mitochondrial G-quadruplex DNA (Mito27, Mito160) is significantly higher than that of other nucleic acid secondary structures. It can be seen that the fluorescent probe MitoISCH-1 can specifically recognize the structure of mitochondrial G-quadruplex DNA.
(4)分别向1uM的荧光探针MitoISCH-1的缓冲溶液中滴加上述不同线粒体DNA测试液,测试随着DNA浓度的升高,混合液的荧光强度变化情况,测试结果如图4所示。(4) Drop the above-mentioned different mitochondrial DNA test solutions into the 1uM fluorescent probe MitoISCH-1 buffer solution respectively, and test the changes in the fluorescence intensity of the mixed solution as the DNA concentration increases. The test results are shown in Figure 4. .
结果显示在相同浓度下,探针对线粒体G-四链体Mito27和Mito160的荧光响应明显高于其他二级结构,且随着浓度的增加,荧光强度越来越强,与其他二级结构的区别也越来越明显。证明荧光探针MitoISCH-1特异性识别线粒体G-四链体DNA结构。The results show that at the same concentration, the fluorescence response of the probe to the mitochondrial G-quadruplex Mito27 and Mito160 is significantly higher than other secondary structures, and with the increase of the concentration, the fluorescence intensity becomes stronger and stronger. The difference is becoming more and more obvious. It is proved that the fluorescent probe MitoISCH-1 specifically recognizes the structure of mitochondrial G-quadruplex DNA.
二、测试荧光探针MitoISCH-1对活细胞内线粒体G-四链体DNA的特异性识别作用2. Test the specific recognition effect of the fluorescent probe MitoISCH-1 on mitochondrial G-quadruplex DNA in living cells
(1)对线粒体中G-四链体DNA的荧光显微成像(1) Fluorescence microscopic imaging of G-quadruplex DNA in mitochondria
将Hela(人宫颈癌细胞)细胞放在培养基(DMEM培养液和10%胚牛血清)中,放置于条件为37℃、5%CO
2和20%O
2的培养箱中培养24~48h。取荧光探针MitoISCH-1(用Hela细胞培养基配制1.0μM MitoISCH-1)加入到培养皿中继续培养3h后,使用培养基清洗样本3次,进行荧光成像,结果见图5。
Put Hela (human cervical cancer cell) cells in culture medium (DMEM culture medium and 10% embryonic bovine serum), and place them in an incubator at 37°C, 5% CO 2 and 20% O 2 for 24 to 48 hours . Take the fluorescent probe MitoISCH-1 (prepared with Hela cell culture medium 1.0μM MitoISCH-1) and add it to the culture dish and continue to culture for 3 hours. The sample is washed with culture medium for 3 times and fluorescence imaging is performed. The result is shown in Figure 5.
实验结果发现,染有MitoISCH-1的细胞线粒体中呈现出较强的荧光,实验结果表明MitoISCH-1具有较好的细胞膜透过性,能够定位于细胞的线粒体中。预先用G-四链体配体PDS(10μM)培养24h后的Hela细胞,线粒体中的荧光强度明显增强,表明MitoISCH-1能够用于线粒体中G-四链体DNA的检测,并且在测试过程中细胞保持较高的活性。The experimental results found that the mitochondria of cells stained with MitoISCH-1 showed strong fluorescence. The experimental results showed that MitoISCH-1 has good cell membrane permeability and can be located in the mitochondria of cells. After pre-cultured with G-quadruplex ligand PDS (10μM) for 24 hours in Hela cells, the fluorescence intensity in mitochondria was significantly increased, indicating that MitoISCH-1 can be used for the detection of G-quadruplex DNA in mitochondria, and during the test process Medium cells maintain high activity.
上述实验结果表明本发明所述荧光探针具有特异性识别活细胞线粒体中G-四链体DNA的作用,能够实时检测线粒体中G-四链体DNA的变化。The above experimental results show that the fluorescent probe of the present invention has the function of specifically recognizing the G-quadruplex DNA in the mitochondria of living cells, and can detect the changes of the G-quadruplex DNA in the mitochondria in real time.
本发明提供的荧光探针,其结构如式(Ⅰ)所示,结构中Isaindigotone结构和香豆素形成的共轭体系是探针能够特异性识别G-四链体DNA的母体结构。其中R
1,R
3取代基发生变化时,对于活性的影响不大。R
2为线粒体定位基团,其中连接三苯基膦的linker的长度不影响探针在线粒体中的定位和对线粒体中G-四链体DNA特异性识别,因此化合物MitoISCH-2和MitoISCH-3同样具有靶向线粒体G-四链体DNA的作用。
The fluorescent probe provided by the present invention has a structure as shown in formula (I). In the structure, the conjugated system formed by the Isaindigotone structure and the coumarin is the parent structure of the probe that can specifically recognize the G-quadruplex DNA. Among them , when the substituents of R 1 and R 3 are changed, it has little effect on the activity. R 2 is the mitochondrial localization group, where the length of the linker connecting triphenylphosphine does not affect the positioning of the probe in the mitochondria and the specific recognition of G-quadruplex DNA in the mitochondria, so the compounds MitoISCH-2 and MitoISCH-3 It also has the effect of targeting mitochondrial G-quadruplex DNA.
最后所应当说明的是,以上实施例仅用以说明本发明的技术方案而非对本发明保护范围的限制,对于本领域的普通技术人员来说,在上述说明及思路的基础上还可以做出其它不同形式的变化或变动,这里无需也无法对所有的实施方式予以穷举。凡在本发明的精神和原则之内所作的任何修改、等同替换和改进等,均应包含在本发明权利要求的保护范围之内。Finally, it should be noted that the above embodiments are only used to illustrate the technical solutions of the present invention and not to limit the scope of protection of the present invention. For those of ordinary skill in the art, they can also make decisions based on the above descriptions and ideas. For other changes or changes in different forms, it is not necessary and impossible to enumerate all the implementation methods here. Any modification, equivalent replacement and improvement made within the spirit and principle of the present invention shall be included in the protection scope of the claims of the present invention.