WO2021031025A1 - Application of ptbp1 inhibitor in prevention and/or treatment of neurodegenerative disease - Google Patents

Application of ptbp1 inhibitor in prevention and/or treatment of neurodegenerative disease Download PDF

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WO2021031025A1
WO2021031025A1 PCT/CN2019/101201 CN2019101201W WO2021031025A1 WO 2021031025 A1 WO2021031025 A1 WO 2021031025A1 CN 2019101201 W CN2019101201 W CN 2019101201W WO 2021031025 A1 WO2021031025 A1 WO 2021031025A1
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ptbp1
gene
astrocytes
another preferred
protein
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PCT/CN2019/101201
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French (fr)
Chinese (zh)
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杨辉
周海波
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中国科学院脑科学与智能技术卓越创新中心
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Priority to PCT/CN2019/101201 priority Critical patent/WO2021031025A1/en
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • C12N9/22Ribonucleases RNAses, DNAses

Definitions

  • the invention relates to the field of biomedicine. More specifically, the present invention relates to the use of Ptbp1 inhibitors in the prevention and/or treatment of neurodegenerative diseases.
  • Parkinson's disease is a serious neurodegenerative disease characterized by the loss of dopamine neurons in the substantia nigra of the midbrain.
  • Previous studies have achieved the direct reprogramming of astrocytes into dopamine neurons in vitro and in animal models by simultaneously overexpressing several transcription factors.
  • Ptbp1 mediated neuronal reprogramming in vivo has not been reported yet.
  • the main treatment for Parkinson's disease is drugs represented by levodopa preparations.
  • surgical treatment can also improve symptoms to a certain extent. It should be pointed out that all these methods can only partially alleviate the disease, but cannot achieve the effect of preventing the development of the disease.
  • the purpose of the present invention is to provide a target that can effectively treat neurodegenerative diseases.
  • Another purpose of the present invention is to provide a new target Ptbp1 for the treatment of Parkinson's disease.
  • Ptbp1 By inhibiting the expression of Ptbp1, astrocytes in the striatum can be directly converted into dopamine neurons and the phenotype of Parkinson's disease can be restored. .
  • a Ptbp1 gene or its encoded protein inhibitor for preparing a composition or preparation, and the composition or preparation is used to prevent and/or treat neurodegenerative diseases.
  • composition or preparation is also used for one or more purposes selected from the following group:
  • the mammal includes a mammal suffering from a neurodegenerative disease.
  • the mammal includes a human or non-human mammal.
  • the non-human mammal includes rodents (such as mice, rats, or rabbits) and primates (such as monkeys).
  • the astrocytes are derived from the striatum, spinal cord, dorsal midbrain or cerebral cortex, preferably, the astrocytes are derived from the striatum.
  • the excitatory neurons include dopamine neurons.
  • the inhibitor is selected from the following group: antibodies, small molecule compounds, microRNA, siRNA, shRNA, gene editor, or a combination thereof.
  • the gene editor includes a DNA gene editor and an RNA gene editor.
  • the gene editor includes optional gRNA and gene editing protein.
  • the gRNA is RNA that guides the gene editing protein to specifically bind to the Ptbp1 gene.
  • the gRNA guide gene editing protein specifically binds to the mRNA of the Ptbp1 gene.
  • the gene editing protein is selected from the group consisting of CasRx, CRISPR/Cas9, Cpf1, Cas9, Cas13a, Cas13b, Cas13c, or a combination thereof.
  • the source of the gene editing protein is selected from the group consisting of Streptococcus pyogenes, Staphylococcus aureus, Acidaminococcus sp, Lachnospiraceae bacterium ), Ruminococcus Flavefaciens, or a combination thereof.
  • the Ptbp1 is derived from mammals; preferably, it is derived from humans, mice, rats, or rabbits; more preferably, it is derived from humans.
  • the Ptbp1 gene includes wild-type Ptbp1 gene and mutant Ptbp1 gene.
  • the mutant type includes a mutant form in which the function of the encoded protein is not changed after mutation (that is, the function is the same or substantially the same as that of the wild-type encoded protein).
  • polypeptide encoded by the mutant Ptbp1 gene is the same or substantially the same as the polypeptide encoded by the wild Ptbp1 gene.
  • the mutant Ptbp1 gene includes homology of ⁇ 80% (preferably ⁇ 90%, more preferably ⁇ 95%, more preferably ⁇ 98% compared with the wild Ptbp1 gene) Or 99%) polynucleotides.
  • mutant Ptbp1 gene is included in the 5'end and/or 3'end of the wild-type Ptbp1 gene, truncated or added 1-60 (preferably 1-30, more preferably 1 -10) nucleotide polynucleotides.
  • the Ptbp1 gene includes a cDNA sequence, a genome sequence, or a combination thereof.
  • the Ptbp1 protein includes active fragments of Ptbp1 or derivatives thereof.
  • the homology of the active fragment or its derivative with Ptbp1 is at least 90%, preferably 95%, more preferably 98%, 99%.
  • the active fragment or derivative thereof has at least 80%, 85%, 90%, 95%, 100% of Ptbp1 activity.
  • amino acid sequence of the Ptbp1 protein is selected from the following group:
  • amino acid sequence shown in SEQ ID NO.: 1 is formed by the substitution, deletion or addition of one or several (e.g. 1-10) amino acid residues, which has the function of the protein and is formed by ( i) Derived polypeptide; or
  • the homology between the amino acid sequence and the amino acid sequence shown in SEQ ID NO.:1 is ⁇ 90% (preferably ⁇ 95%, more preferably ⁇ 98% or 99%), and a polypeptide having the protein function.
  • nucleotide sequence of the Ptbp1 gene is selected from the following group:
  • the ptbp1 protein is shown in SEQ ID NO.:1.
  • nucleic acid encoding the ptbp1 protein is shown in SEQ ID NO.: 2.
  • the region targeted by the ptbp1 gene or the inhibitor of the encoded protein is the 4758-4787 and/or 5381-5410 positions of the ptbp1 gene sequence.
  • the inhibitor of the ptbp1 gene or its encoded protein inhibits the activity and/or expression of ptbp1.
  • the inhibitory rate of the ptbp1 gene or its encoded protein inhibitor on the activity and/or expression of ptbp1 is greater than 90%, preferably, 90%-95%.
  • the inhibitor targets astrocytes in brain tissue.
  • the neurodegenerative disease includes Parkinson's disease.
  • the second aspect of the present invention provides a composition comprising:
  • a gene editing protein or an expression vector thereof is selected from the group consisting of CasRx, CRISPR/Cas9, Cpf1, Cas9, Cas13a, Cas13b, Cas13c, or a combination thereof;
  • the gRNA is RNA that guides the gene editing protein to specifically bind to the Ptbp1 gene.
  • the gRNA guide gene editing protein specifically binds to the mRNA of the Ptbp1 gene.
  • the composition includes a pharmaceutical composition.
  • composition further includes:
  • the expression vector of the gene editing protein includes a vector targeting astrocytes of brain tissue.
  • the expression vector includes a viral vector.
  • the viral vector is selected from the following group: adeno-associated virus (AAV), adenovirus, lentivirus, retrovirus, herpes virus, SV40, poxvirus, or a combination thereof.
  • AAV adeno-associated virus
  • adenovirus adenovirus
  • lentivirus lentivirus
  • retrovirus lentivirus
  • herpes virus SV40
  • poxvirus poxvirus
  • the vector is selected from the following group: lentivirus, adenovirus, adeno-associated virus (AAV), or a combination thereof, preferably, the vector is adeno-associated virus (AAV).
  • the dosage form of the composition is selected from the group consisting of a lyophilized preparation, a liquid preparation, or a combination thereof.
  • the dosage form of the composition is a liquid preparation.
  • the dosage form of the composition is an injection dosage form.
  • other drugs for preventing and/or treating neurodegenerative diseases are selected from the following group: dopamine prodrugs, non-ergot dopamine receptor agonists, monoamine oxidase B inhibitors, or combinations thereof.
  • the composition is a cell preparation.
  • the expression vector of the gene editing protein and the expression vector of gRNA are the same vector or different vectors.
  • the weight ratio of the component (a) to the component (b) is 100:1 to 0.01:1, preferably, 10:1 to 0.1:1, more preferably, 2: 1-0.5:1.
  • the content of the component (a) in the composition is 0.001%-99%, preferably, 0.1%-90%, more preferably, 1%-70%.
  • the content of the component (b) is 0.001%-99%, preferably, 0.1%-90%, more preferably, 1%-70%.
  • the content of the component (c) in the composition is 1%-99%, preferably, 10%-90%, more preferably, 30%-70%.
  • the component (a), component (b) and optional component (c) account for 0.01-99.99 wt% of the total weight of the composition, which is greater than Preferably 0.1-90wt%, more preferably 1-80wt%.
  • the third aspect of the present invention provides a medicine kit including:
  • the gRNA guide gene editing protein specifically binds to the mRNA of the Ptbp1 gene.
  • the kit further includes:
  • first container, the second container, and the third container are the same or different containers.
  • the medicine in the first container is a unilateral preparation containing gene editing protein or its expression vector.
  • the medicine in the second container is a unilateral preparation containing gRNA or its expression vector.
  • the medicine in the third container is a single preparation containing other medicines for preventing and/or treating neurodegenerative diseases.
  • the dosage form of the drug is selected from the group consisting of a lyophilized preparation, a liquid preparation, or a combination thereof.
  • the dosage form of the drug is an oral dosage form or an injection dosage form.
  • the kit also contains instructions.
  • the fourth aspect of the present invention provides a composition according to the second aspect of the present invention or the use of the kit according to the third aspect of the present invention to prepare a medicine for preventing and/or treating neurodegenerative diseases.
  • the concentration (viral titer) of the other drugs for preventing and/or treating neurodegenerative diseases is> 1 ⁇ 10 13 , preferably, 1 ⁇ 10 13 —1 ⁇ 10 14 .
  • composition or kit includes (a) gene editing protein or its expression vector; and (b) gRNA or its expression vector; and (c) optionally other prevention and/or treatment of nerves Drugs for degenerative diseases; and (d) pharmaceutically acceptable carriers.
  • composition or kit in another preferred embodiment, (a) gene editing protein or its expression vector; and (b) gRNA or its expression vector; and (c) optional other prevention and/or treatment
  • the drug for neurodegenerative diseases accounts for 0.01-99.99% by weight of the total weight of the composition or the kit, preferably 0.1-90% by weight, more preferably 1-80% by weight.
  • the fifth aspect of the present invention provides a method for promoting the differentiation of astrocytes into excitatory neurons, including the steps:
  • astrocytes are cultured to promote the differentiation of astrocytes into excitatory neurons.
  • the excitatory neurons include dopamine neurons.
  • the astrocytes include striatal astrocytes.
  • the astrocytes are astrocytes of brain tissue.
  • the astrocytes are cells in vitro.
  • the effect of the concentration of the gene or its encoded protein Ptbp1 inhibitors > 1 ⁇ 10 13, preferably, 1 ⁇ 10 13 -1 ⁇ 10 14.
  • the sixth aspect of the present invention provides a method for preventing and/or treating neurodegenerative diseases, including:
  • Ptbp1 gene or its encoded protein inhibitor or the composition according to the second aspect of the present invention, or the kit according to the third aspect of the present invention is administered to a subject in need.
  • the subject includes a human or non-human mammal suffering from a neurodegenerative disease.
  • the non-human mammals include rodents and primates, preferably mice, rats, rabbits, and monkeys.
  • the seventh aspect of the present invention provides a method for screening candidate compounds for the prevention and/or treatment of neurodegenerative diseases, the method comprising the steps:
  • test group In the test group, add the test compound to the cell culture system, and observe the expression (E1) and/or activity (A1) of Ptbp1 in the cells of the test group; in the control group, in the same cell No test compound is added to the culture system, and the expression (E0) and/or activity (A0) of Ptbp1 in the cells of the control group is observed;
  • the expression level of Ptbp1 is obtained by qPCR.
  • the method further includes the steps:
  • step (b) For the candidate compound obtained in step (a), further test its promoting effect on the differentiation of astrocytes into excitatory neurons; and/or further test whether it has a down-regulation effect on the Ptbp1 gene.
  • the method includes step (c): applying the candidate compound determined in step (a) to a mammalian model, and determining its effect on the mammal.
  • the mammal is a mammal suffering from a neurodegenerative disease.
  • the "significantly lower” means E1/E0 ⁇ 1/2, preferably, ⁇ 1/3, more preferably ⁇ 1/4.
  • the "significantly lower” means that A1/A0 ⁇ 1/2, preferably, ⁇ 1/3, more preferably ⁇ 1/4.
  • the cells include astrocytes.
  • the cells include striatal astrocytes.
  • the cell is a cell cultured in vitro.
  • the method is non-diagnostic and non-therapeutic.
  • Figure 1 shows the direct conversion of astrocytes into functional neurons using CasRx-mediated Ptbp1 knockdown. among them,
  • FIG. 1 Schematic diagram of the process of using CasRx to mediate Ptbp1 knockdown.
  • FIG. 1 Schematic diagram of injection process.
  • Vector 1 AAV-GFAP-mCherry
  • vector 2 AAV-CasRx-Ptbp1 carries CasRx and two gRNAs.
  • AAV-GFAP-mCherry and AAV-CasRx-Ptbp1 targeting Ptbp1 were injected into the right striatum together. On the left side, only AAV-GFAP-mCherry was injected as a control. It takes about 5-6 weeks to complete transdifferentiation after injection.
  • FIG. 2 shows that CasRx-mediated Ptbp1 knockdown can reprogram astrocytes into dopamine neurons in a mouse model of 6-OHDA-induced Parkinsonism.
  • (c) Percentage of TH + /mCherry + cells in TH + cells in the injection area (n 3 mice). All values are expressed as mean ⁇ sem.
  • Figure 3 shows that induction of dopamine neurons can alleviate motor dysfunction in PD mouse models.
  • (a) the net rotation caused by apomorphine injection (number of turns/20 minutes).
  • (b) The ratio of spontaneous contact on the same side to the total number of contacts.
  • (c) Rotating rod test. It indicates the time (seconds) that the mouse stayed on the rotating rod before falling.
  • 6-OHDA+EFS-CasRx-Ptbp1, n 12 mice. The data was collected one month after the virus injection. ANOVA.
  • Figure 4 shows the loss of dopamine neurons and fibers caused by unilateral injection of 6-OHDA.
  • TH staining shows the reduction of TH + neurons (red) in the substantia nigra (the same side where 6-OHDA was injected) on one side. Scale bar: 50 ⁇ m.
  • DAT Dopamine transporter staining shows the reduction of dopamine fibers (green) on the same side as the injection of 6-OHDA. Scale bar: 1mm.
  • astrocytes such as striatum Astrocytes
  • excitatory neurons such as dopamine neurons
  • neurodegenerative diseases such as Parkinson's disease
  • Astrocytes are the most abundant type of cells in the mammalian brain. They perform many functions, including biochemical support (such as forming a blood-brain barrier), providing nutrients for neurons, maintaining extracellular ion balance, and participating in repair and scar formation after brain and spinal cord injury. According to the content of glial filaments and the shape of cell processes, astrocytes can be divided into two types: fibrous astrocytes (fibrous astrocytes) are mostly distributed in the white matter of the brain and spinal cord, with slender protrusions and fewer branches , The cytoplasm contains a lot of glial filaments; protoplasmic astrocytes (protoplasmic astrocytes) are mostly distributed in the gray matter, with stubby cell processes and many branches.
  • biochemical support such as forming a blood-brain barrier
  • astrocytes can be divided into two types: fibrous astrocytes (fibrous astrocytes) are mostly distributed in the white matter of the brain and spinal cord, with slender protru
  • the astrocytes that can be used in the present invention are not particularly limited, and include various astrocytes derived from the central nervous system of mammals, such as from the striatum, spinal cord, dorsal midbrain or cerebral cortex, preferably , From the striatum.
  • Dopaminergic neuron contains and releases dopamine (dopamine, DA) as a neurotransmitter.
  • Dopamine is a catecholamine neurotransmitter and plays an important biological role in the central nervous system.
  • Dopaminergic neurons in the brain are mainly concentrated in the substantria nigra pars compacta (SNc) of the midbrain and the ventral cover Area (ventral tegmental area, VTA), hypothalamus and periventricular. Many experiments have confirmed that dopaminergic neurons are closely related to many diseases of the human body, the most typical being Parkinson's disease.
  • Neurodegenerative diseases are diseases caused by the loss of neurons in the brain and spinal cord. Neurons are the most important part of the nervous system, and their death will eventually lead to the dysfunction of the nervous system. After a patient suffers from a neurodegenerative disease, there will be mobility or cognitive impairment, and the development of the disease often leads to many complications, causing serious damage to the patient's life.
  • neurodegenerative diseases mainly include Alzheimer's disease, Parkinson's disease, Huntington's disease, amyotrophic lateral sclerosis, and multiple sclerosis. At present, the neurodegenerative diseases can only be relieved or delayed, and cannot be completely cured.
  • Parkinson's disease (PD) is a serious neurodegenerative disease characterized by the loss of dopamine neurons in the substantia nigra of the midbrain.
  • the gene editor includes a DNA gene editor and an RNA gene editor.
  • the gene editor of the present invention includes a gene editing protein and optionally gRNA.
  • the nucleotides of the gene editing protein can be obtained by genetic engineering techniques, such as genome sequencing, polymerase chain reaction (PCR), etc., and the amino acid sequence can be derived from the nucleotide sequence.
  • the source of the wild-type gene editing protein includes (but is not limited to): Ruminococcus Flavefaciens, Streptococcus pyogenes, Staphylococcus aureus, and Acidaminococcus sp. , Lachnospiraceae bacterium (Lachnospiraceae bacterium).
  • the gene editing protein includes, but is not limited to Cas13 (such as CasRx), CRISPR/Cas9, Cpf1, SaCas9, Cas13a, Cas13b, and Cas13c.
  • protein of the present invention refers to a protein or polypeptide having an amino acid sequence of ptbp1. They include ptbp1 protein with or without starting methionine. In addition, the term also includes full-length ptbp1 and fragments thereof.
  • the ptbp1 protein referred to in the present invention includes its complete amino acid sequence, its secreted protein, its mutant and its functionally active fragments.
  • the ptbp1 protein is a polypyrimidine domain binding protein 1, which is an RNA binding protein that regulates RNA splicing. At the same time, it also plays a very critical role in other functions of RNA.
  • ptbp1 gene and “ptbp1 polynucleotide” are used interchangeably, and both refer to a nucleic acid sequence having a ptbp1 nucleotide sequence.
  • the genome of the human ptbp1 gene is 14936bp in length (NCBI GenBank accession number is 5725).
  • the genome of the mouse ptbp1 gene is 10004bp in length (NCBI GenBank accession number is 19205).
  • nucleic acid sequence encoding it can be constructed based on it, and specific probes can be designed based on the nucleotide sequence.
  • the full-length nucleotide sequence or its fragments can usually be obtained by PCR amplification, recombination, or artificial synthesis.
  • primers can be designed according to the ptbp1 nucleotide sequence disclosed in the present invention, especially the open reading frame sequence, and a commercially available cDNA library or a cDNA prepared by a conventional method known to those skilled in the art can be used.
  • the library is used as a template to amplify the relevant sequences. When the sequence is long, it is often necessary to perform two or more PCR amplifications, and then splice the amplified fragments together in the correct order.
  • the recombination method can be used to obtain the relevant sequence in large quantities. This usually involves cloning it into a vector, then transferring it into a cell, and then isolating the relevant sequence from the proliferated host cell by conventional methods.
  • artificial synthesis methods can also be used to synthesize related sequences, especially when the fragment length is short. Usually, by first synthesizing multiple small fragments, and then ligating to obtain a very long fragment.
  • the DNA sequence encoding the protein (or fragment or derivative thereof) of the present invention can be obtained completely through chemical synthesis.
  • the DNA sequence can then be introduced into various existing DNA molecules (such as vectors) and cells known in the art.
  • the polynucleotide sequence of the present invention can be used to express or produce recombinant ptbp1 polypeptide. Generally speaking, there are the following steps:
  • the ptbp1 polynucleotide sequence can be inserted into a recombinant expression vector.
  • any plasmid and vector can be used as long as it can replicate and stabilize in the host.
  • An important feature of an expression vector is that it usually contains an origin of replication, a promoter, a marker gene, and translation control elements.
  • the methods well known to those skilled in the art can be used to construct an expression vector containing the ptbp1 coding DNA sequence and appropriate transcription/translation control signals. These methods include in vitro recombinant DNA technology, DNA synthesis technology, and in vivo recombination technology.
  • the DNA sequence can be effectively linked to an appropriate promoter in the expression vector to guide mRNA synthesis.
  • the expression vector also includes a ribosome binding site for translation initiation and a transcription terminator.
  • the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selecting transformed host cells, such as dihydrofolate reductase for eukaryotic cell culture, neomycin resistance, and green Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
  • selectable marker genes to provide phenotypic traits for selecting transformed host cells, such as dihydrofolate reductase for eukaryotic cell culture, neomycin resistance, and green Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
  • a vector containing the above-mentioned appropriate DNA sequence and an appropriate promoter or control sequence can be used to transform an appropriate host cell so that it can express the protein.
  • the host cell can be a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell.
  • a prokaryotic cell such as a bacterial cell
  • a lower eukaryotic cell such as a yeast cell
  • a higher eukaryotic cell such as a mammalian cell.
  • Representative examples include: Escherichia coli, bacterial cells of the genus Streptomyces; fungal cells such as yeast; plant cells; insect cells; animal cells, etc.
  • Transformation of host cells with recombinant DNA can be performed by conventional techniques well known to those skilled in the art.
  • the host is a prokaryotic organism such as Escherichia coli
  • competent cells that can absorb DNA can be harvested after the exponential growth phase and treated with the CaCl 2 method. The steps used are well known in the art. Another method is to use MgCl 2 . If necessary, transformation can also be performed by electroporation.
  • the following DNA transfection methods can be selected: calcium phosphate co-precipitation method, conventional mechanical methods such as microinjection, electroporation, liposome packaging, etc.
  • the obtained transformants can be cultured by conventional methods to express the polypeptide encoded by the gene of the present invention.
  • the medium used in the culture can be selected from various conventional mediums.
  • the culture is carried out under conditions suitable for the growth of the host cell. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
  • the recombinant polypeptide in the above method can be expressed in the cell or on the cell membrane, or secreted out of the cell. If necessary, the physical, chemical, and other characteristics can be used to separate and purify the recombinant protein through various separation methods. These methods are well known to those skilled in the art. Examples of these methods include, but are not limited to: conventional renaturation treatment, treatment with protein precipitation agent (salting out method), centrifugation, osmotic cleavage, ultra-treatment, ultra-centrifugation, molecular sieve chromatography (gel filtration), adsorption layer Analysis, ion exchange chromatography, high performance liquid chromatography (HPLC) and other various liquid chromatography techniques and combinations of these methods.
  • Adeno-associated virus is smaller than other viral vectors, is non-pathogenic, and can transfect dividing and undivided cells, gene therapy methods for genetic diseases based on AAV vectors have been affected. Widespread concern.
  • Adeno-associated virus also known as adeno-associated virus, belongs to the Parvoviridae dependent virus genus. It is the simplest type of single-stranded DNA-deficient virus found so far and requires a helper virus (usually Viruses) participate in replication. It encodes the cap and rep genes in the inverted repeat (ITR) at both ends. ITRs play a decisive role in virus replication and packaging. The cap gene encodes the viral capsid protein, and the rep gene is involved in virus replication and integration. AAV can infect a variety of cells.
  • Recombinant adeno-associated virus vector is derived from non-pathogenic wild-type adeno-associated virus. Due to its good safety, wide range of host cells (dividing and non-dividing cells), and low immunogenicity, it can express foreign genes in vivo. Long and other characteristics, it is regarded as one of the most promising gene transfer vectors and has been widely used in gene therapy and vaccine research worldwide. After more than 10 years of research, the biological characteristics of recombinant adeno-associated virus have been deeply understood, especially its application effects in various cells, tissues and in vivo experiments have accumulated a lot of data.
  • rAAV is used in the research of gene therapy for various diseases (including in vivo and in vitro experiments); at the same time, as a characteristic gene transfer vector, it is also widely used in gene function research, disease model construction, and gene preparation. Knockout mice and other aspects.
  • the vector is a recombinant AAV vector.
  • AAVs are relatively small DNA viruses that can integrate into the genome of the cells they infect in a stable and site-specific manner. They can infect a large range of cells without any effect on cell growth, morphology or differentiation, and they do not seem to be involved in human pathology.
  • the AAV genome has been cloned, sequenced and characterized.
  • AAV contains an inverted terminal repeat (ITR) region of approximately 145 bases at each end, which serves as the origin of replication of the virus. The rest of the genome is divided into two important regions with encapsidation functions: the left part of the genome containing the rep gene involved in viral replication and viral gene expression; and the right part of the genome containing the cap gene encoding the viral capsid protein.
  • ITR inverted terminal repeat
  • AAV vectors can be prepared using standard methods in the art. Adeno-associated viruses of any serotype are suitable. Methods for purifying vectors can be found in, for example, U.S. Patent Nos. 6,566,118, 6,989,264, and 6,995,006, the disclosures of which are incorporated herein by reference in their entirety. The preparation of hybrid vectors is described in, for example, PCT Application No. PCT/US2005/027091, the disclosure of which is incorporated herein by reference in its entirety. The use of AAV-derived vectors for in vitro and in vivo gene transfer has been described (see, for example, International Patent Application Publication Nos. WO91/18088 and WO93/09239; U.S. Patent Nos.
  • Replication-deficient recombinant AAV can be prepared by co-transfecting the following plasmids into a cell line infected with a human helper virus (such as adenovirus): the nucleic acid sequence of interest is flanked by two AAV inverted terminal repeats (ITR) Region plasmids, and plasmids carrying AAV encapsidation genes (rep and cap genes).
  • a human helper virus such as adenovirus
  • the recombinant vector is capsidized to viral particles (e.g., including but not limited to AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15 And AAV virus particles of AAV16). Therefore, the present disclosure includes recombinant virus particles (recombinant because they contain recombinant polynucleotides) containing any of the vectors described herein. Methods of producing such particles are known in the art and are described in US Patent No. 6,596,535.
  • the ptbp1 inhibitor (or antagonist) that can be used in the present invention includes any substance that can inhibit the expression and/or activity of the ptbp1 gene or its encoded protein.
  • the inhibitor of ptbp1 includes an antibody of ptbp1, antisense RNA of ptbp1 nucleic acid, siRNA, shRNA, miRNA, gene editor, or an activity inhibitor of ptbp1.
  • a preferred inhibitor of ptbp1 refers to a gene editor capable of inhibiting the expression of ptbp1.
  • the inhibitors of ptbp1 of the present invention include inhibitors that target positions 4758-4787 and/or positions 5381-5410 of the ptbp1 gene sequence.
  • the targets of the ptbp1 inhibitor of the present invention include astrocytes.
  • the methods and steps for inhibiting ptbp1 include using an antibody of ptbp1 to neutralize its protein, and using shRNA or siRNA or a gene editor carried by a virus (such as adeno-associated virus) to silence the ptbp1 gene.
  • a virus such as adeno-associated virus
  • the inhibition rate of ptbp1 is generally at least 50% or more inhibition, preferably 60%, 70%, 80%, 90%, 95% inhibition, which can be based on conventional techniques, such as flow cytometry, fluorescent quantitative PCR or Western Methods such as blot control and detect the inhibition rate of ptbp1.
  • the inhibitor of the ptbp1 protein of the present invention when administered (administered) therapeutically, can inhibit the expression and/or activity of the ptbp1 protein, thereby inducing stars
  • the glial cells differentiate into dopamine neurons, thereby preventing and/or treating neurodegenerative diseases.
  • these substances can be formulated in a non-toxic, inert and pharmaceutically acceptable aqueous carrier medium, where the pH is usually about 5-8, preferably about 6-8, although the pH can be The nature of the formulated substance and the condition to be treated vary.
  • the formulated pharmaceutical composition can be administered by conventional routes, including (but not limited to): local, intramuscular, intraperitoneal, intravenous, subcutaneous, intradermal, topical administration, autologous cell extraction and culture and reinfusion Wait.
  • the present invention also provides a pharmaceutical composition, which contains a safe and effective amount of the inhibitor of the present invention (such as antibody, gene editor, antisense sequence (such as siRNA), or inhibitor) and a pharmaceutically acceptable carrier or excipient Shape agent.
  • a pharmaceutical composition which contains a safe and effective amount of the inhibitor of the present invention (such as antibody, gene editor, antisense sequence (such as siRNA), or inhibitor) and a pharmaceutically acceptable carrier or excipient Shape agent.
  • Such carriers include (but are not limited to): saline, buffer, glucose, water, glycerol, ethanol, and combinations thereof.
  • the pharmaceutical preparation should match the mode of administration.
  • the pharmaceutical composition of the present invention can be prepared in the form of injection, for example, prepared by conventional methods with physiological saline or an aqueous solution containing glucose and other adjuvants.
  • Pharmaceutical compositions such as tablets and capsules can be prepared by conventional methods.
  • Pharmaceutical compositions such as injections, solutions, tablets and capsules should be manufactured under sterile
  • the present invention found for the first time that reducing the expression or activity of the Ptbp1 gene or its encoded protein in astrocytes can induce the differentiation of astrocytes into dopamine neurons, thereby preventing and/or treating neurodegeneration Diseases (such as Parkinson's disease).
  • the present invention finds for the first time that using a gene editor (including gene editing protein and gRNA) to inhibit the expression of ptbp1 in astrocytes can make astrocytes transdifferentiate into dopamine neurons, which in turn is Parkinson’s Treatment provides a potential way.
  • a gene editor including gene editing protein and gRNA
  • the present invention found for the first time that the induction of dopamine neurons alleviated the motor dysfunction in the Parkinsonian mouse model.
  • the present invention finds for the first time that the RNA-targeted CRISPR system CasRx can avoid the risk of permanent DNA changes caused by traditional CRISPR-Cas9 editing. Therefore, CasRx-mediated RNA editing provides an effective means for the treatment of various diseases.
  • GRNA sequence The gRNA sequence targeting Ptbp1 is: gRNA1: 5'-tgtagatgggctgtccacgaagcactggcg-3'; gRNA2: 5'-gcttggagaagtcgatgcgcagcgtgcagc-3'.
  • Transient transfection of astrocytes and qPCR isolated and cultured as previously described 1 astrocytes. In short, astrocytes were seeded in 6-well plates. Using Lipofectamine 3000 (Thermo Fisher Scientific) according to standard procedures, 3 ⁇ g of gRNA-CasRx-GFP expressing vector was used for transient transfection. The control plasmid expresses non-targeted guidance.
  • GFP-positive cells were collected by flow fluorescence cell sorting (FACS) and lysed for qPCR analysis: first use Trizol (Ambion) to extract RNA, and then use reverse transcription kit (HiScript for qPCR) Q RT SuperMix, Vazyme, Biotech) reverse transcription of RNA into cDNA. The amplification was followed by AceQ qPCR SYBR Green Master Mix (Vazyme, Biotech).
  • Ptbp1 qPCR primers are: forward, 5'-AGAGGAGGCTGCCAACACTA-3'; reverse, 5'-GTCCAGGGTCACTGGGTAGA-3'.
  • Stereotactic injection AAV8 ( Figure 1) and AAV-PhP.eb ( Figures 2 and 3) were used in this study. Stereotactic injection (C57BL / 6,1-3 months) 2 method as described above.
  • the titers of AAV-CasRx-Ptbp1 in Figure 1 and Figures 2, 3 are about 5 ⁇ 10e12 (2 ⁇ l per injection) and 1.6 ⁇ 10e13 (2-3 ⁇ l per injection). Inject AAV into the striatum (AP+0.8mm, ML ⁇ 1.6mm and DV-2.8mm).
  • Immunofluorescence staining was performed 5-6 weeks ( Figure 1) or 3-4 weeks ( Figures 2 and 3) after injection. After the mice were perfused, their brains were taken and fixed with 4% paraformaldehyde (PFA) overnight, and kept in 30% sucrose for at least 12 hours. The sections were frozen after embedding, and the section thickness was 35 ⁇ m. Before immunofluorescence staining, the brain sections were washed thoroughly with 0.1M phosphate buffer (PB).
  • PB 0.1M phosphate buffer
  • Electrophysiological recordings after AAV injection electrophysiological recordings 5-6 weeks, 3 as previously described.
  • the mice were anesthetized and perfused into the heart, and their brains were put into carbon dioxide-filled NMDG artificial cerebrospinal fluid (aCSF) [NMDG aCSF(mM): NMDG 92, potassium chloride 2.5, sodium dihydrogen phosphate 1.25, bicarbonate Sodium 30, HEPES 20, glucose 25, thiourea 2, sodium ascorbate 5) at room temperature, sodium pyruvate 3, calcium chloride 0.5, magnesium sulfate 10].
  • aCSF NMDG artificial cerebrospinal fluid
  • HEPES HEPES aCSF filled with carbon dioxide at room temperature
  • HEPES which contains aCSF (mM): sodium chloride 92, potassium chloride 2.5, sodium dihydrogen phosphate 1.25, sodium bicarbonate 30, HEPES 20, Glucose 25, Thiourea 2, Sodium Ascorbate 5, Sodium Pyruvate 3, Calcium Chloride 2, Magnesium Sulfate 2].
  • aCSF (mM): sodium chloride 119, potassium chloride 2.5, sodium dihydrogen phosphate 1.25, sodium bicarbonate 24, glucose 12.5, chloride Calcium 2, magnesium sulfate 2].
  • the neuron-like mCherry positive cells were recorded under a microscope (Olympus BX51WI), and Clampex 10 was used to obtain the data.
  • mice were intraperitoneally injected with 0.5 mg/kg apomorphine (A4393, Sigma-Aldrich) 10 minutes before the test. After that, each of them was placed in an opaque cylinder (30 cm in diameter) and recorded on it by a camera for 20 minutes. Rotation is defined as a whole body turning with one hind paw as the center and no head orientation is switched. Calculate the number of rotations on the injection side and the contralateral side. The data was quantified as the number of contralateral reversals within 20 minutes.
  • apomorphine A4393, Sigma-Aldrich
  • Each mouse was gently put into a glass beaker (1000 ml), and the camera was recorded for 10 minutes in front of it. Calculate the number of wall touches on the injection side and the contralateral paw respectively, and quantify the data as the ratio of the number of wall touches on the same side to the total number of wall touches.
  • mice All mice were trained for 2 days and tested on the third day. On the first day, the mice were trained 4 times on a rotating rod at a fixed speed of 4 laps/min, each for 300 seconds. On the 2nd and 3rd days, the mice were trained or tested 4 times at an acceleration of 4 to 40 laps/min. The time the mouse stayed on the rod before falling off was recorded as the stay period, and the average of the 3 longest stay periods was used for analysis.
  • Example 1 Knockdown of Ptbp1 by CasRx can directly convert astrocytes into functional neurons
  • NeuN+/mCherry+ cells (16.2 ⁇ 3%, SEM) were found in the striatum of AAV-CasRx-Ptbp1 injection, but no AAV-CasRx-Ptbp1 in the striatum when the contralateral side was not injected NeuN+/mCherry+ cells (0%, SEM), which shows that CasRx successfully mediates the transformation of astrocytes into neurons ( Figure 1e, f).
  • Example 2 CasRx-mediated knockdown of Ptbp1 can convert astrocytes into dopamine neurons in a 6-OHDA-induced Parkinson's mouse model
  • the Parkinson's model used in the present invention is to inject 6-OHDA unilaterally into the right medial fascicle (MFB) to promote the loss of dopamine neurons in the ventral midbrain on the ipsilateral side and dedopaminergic neuronization of the striatum (Figure 4)
  • Figure 4a shows that TH staining proves that dopamine neurons are killed in the substantia nigra on the same side of OHDA injection;
  • Figure 4b shows that DAT staining proves that dopamine neurons are denervated in the striatum.
  • Example 3 The induced dopamine neurons can alleviate movement disorders in a mouse model of Parkinson's
  • the present invention studies whether the induced dopamine neurons can alleviate the motor symptoms of Parkinson in the 6-OHDA-induced mouse Parkinson's model.
  • the motor function of mice was evaluated by drug induction and spontaneous exercise: We first tested apomorphine-induced rotation behavior, which is a behavioral paradigm widely used to test symptoms after unilateral dopamine neuron loss. After three weeks, it was found that compared with untreated mice after 6-OHDA injection, the apomorphine-induced rotation of the treated mice was significantly reduced (Figure 3a); then the cylindrical test and the rotating rod test were used to test separately Asymmetry and coordination of the forelimb movement, it was found that the treated mice showed a lower percentage of contact on the same side of the cylinder ( Figure 3b) and a longer duration of rotation (Figure 3c).
  • the present invention found that only by knocking down the mRNA of PTBP1, striatum astrocytes can be effectively transformed into dopamine neurons, thereby reducing Parkinson-like symptoms.
  • the RNA-targeted CRISPR system CasRx can avoid the risk of permanent DNA changes caused by traditional CRISPR-Cas9 editing. Therefore, CasRx-mediated RNA editing provides an effective means for the treatment of various diseases.

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Abstract

Provided is an application of a Ptbp1 inhibitor in prevention and/or treatment of a neurodegenerative disease. Specifically, provided is use of an inhibitor for a Ptbp1 gene or an encoded protein thereof, used for preparing a composition or preparation, the composition or preparation being used for preventing and/or treating a neurodegenerative disease. By inhibiting the expression or activity of the Ptbp1 gene or the encoded protein thereof of astrocytes in brain tissues, the astrocytes may be effectively inducted to be differentiated into excitatory neuron, thereby preventing and/or treating the neurodegenerative disease.

Description

Ptbp1抑制剂在预防和/或治疗神经退行性疾病中的应用Application of Ptbp1 inhibitor in the prevention and/or treatment of neurodegenerative diseases 技术领域Technical field
本发明涉及生物医药领域。更具体地,本发明涉及Ptbp1抑制剂在预防和/或治疗神经退行性疾病中的应用。The invention relates to the field of biomedicine. More specifically, the present invention relates to the use of Ptbp1 inhibitors in the prevention and/or treatment of neurodegenerative diseases.
背景技术Background technique
帕金森病(PD)是一种严重的神经退行性疾病,其特征是中脑黑质多巴胺神经元的丧失。以往的研究通过同时过表达几种转录因子,已经实现了体外和动物模型中星形胶质细胞向多巴胺神经元的直接重编程。然而迄今为止,Ptbp1介导的体内神经元重编程还尚未报道。Parkinson's disease (PD) is a serious neurodegenerative disease characterized by the loss of dopamine neurons in the substantia nigra of the midbrain. Previous studies have achieved the direct reprogramming of astrocytes into dopamine neurons in vitro and in animal models by simultaneously overexpressing several transcription factors. However, so far, Ptbp1 mediated neuronal reprogramming in vivo has not been reported yet.
目前对帕金森疾病的主要治疗手段是以左旋多巴制剂为代表的药物。同时手术治疗也能在一定程度上改善症状。需要指出的是所有这些手段只能部分的缓解病情,还达不到阻止病情发展的效果。At present, the main treatment for Parkinson's disease is drugs represented by levodopa preparations. At the same time, surgical treatment can also improve symptoms to a certain extent. It should be pointed out that all these methods can only partially alleviate the disease, but cannot achieve the effect of preventing the development of the disease.
因此,本领域迫切需要开发能够有效治疗神经退行性疾病的靶点。Therefore, there is an urgent need in the art to develop targets that can effectively treat neurodegenerative diseases.
发明内容Summary of the invention
本发明的目的就是提供能够有效治疗神经退行性疾病的靶点。The purpose of the present invention is to provide a target that can effectively treat neurodegenerative diseases.
本发明的另一目的在于提供一个全新治疗帕金森疾病的靶点Ptbp1,通过抑制Ptbp1的表达可以将纹状体内的星形胶质细胞直接转化为多巴胺神经元并且可以恢复帕金森疾病的表型。Another purpose of the present invention is to provide a new target Ptbp1 for the treatment of Parkinson's disease. By inhibiting the expression of Ptbp1, astrocytes in the striatum can be directly converted into dopamine neurons and the phenotype of Parkinson's disease can be restored. .
在本发明第一方面,提供了一种Ptbp1基因或其编码蛋白抑制剂的用途,用于制备组合物或制剂,所述组合物或制剂用于预防和/或治疗神经退行性疾病。In the first aspect of the present invention, there is provided a use of a Ptbp1 gene or its encoded protein inhibitor for preparing a composition or preparation, and the composition or preparation is used to prevent and/or treat neurodegenerative diseases.
在另一优选例中,所述组合物或制剂还用于选自下组的一种或多种用途:In another preferred embodiment, the composition or preparation is also used for one or more purposes selected from the following group:
(a)诱导星形胶质细胞向兴奋性神经元转分化;(a) Inducing the transdifferentiation of astrocytes into excitatory neurons;
(b)治疗哺乳动物的运动障碍。(b) Treatment of movement disorders in mammals.
在另一优选例中,所述哺乳动物包括患有神经退行性疾病的哺乳动物。In another preferred example, the mammal includes a mammal suffering from a neurodegenerative disease.
在另一优选例中,所述哺乳动物包括人或非人哺乳动物。In another preferred embodiment, the mammal includes a human or non-human mammal.
在另一优选例中,所述非人哺乳动物包括啮齿动物(如小鼠、大鼠、或兔)、 灵长类动物(如猴)。In another preferred embodiment, the non-human mammal includes rodents (such as mice, rats, or rabbits) and primates (such as monkeys).
在另一优选例中,所述星形胶质细胞来源于纹状体、脊髓、背侧中脑或大脑皮层,较佳地,所述的星形胶质细胞来源于纹状体。In another preferred embodiment, the astrocytes are derived from the striatum, spinal cord, dorsal midbrain or cerebral cortex, preferably, the astrocytes are derived from the striatum.
在另一优选例中,所述兴奋性神经元包括多巴胺神经元。In another preferred embodiment, the excitatory neurons include dopamine neurons.
在另一优选例中,所述抑制剂选自下组:抗体、小分子化合物、microRNA、siRNA、shRNA、基因编辑器、或其组合。In another preferred embodiment, the inhibitor is selected from the following group: antibodies, small molecule compounds, microRNA, siRNA, shRNA, gene editor, or a combination thereof.
在另一优选例中,所述基因编辑器包括DNA基因编辑器和RNA基因编辑器。In another preferred embodiment, the gene editor includes a DNA gene editor and an RNA gene editor.
在另一优选例中,所述基因编辑器包括任选的gRNA和基因编辑蛋白。In another preferred embodiment, the gene editor includes optional gRNA and gene editing protein.
在另一优选例中,所述gRNA是引导基因编辑蛋白特异性结合Ptbp1基因的RNA。In another preferred example, the gRNA is RNA that guides the gene editing protein to specifically bind to the Ptbp1 gene.
在另一优选例中,所述gRNA引导基因编辑蛋白特异性结合Ptbp1基因的mRNA。In another preferred embodiment, the gRNA guide gene editing protein specifically binds to the mRNA of the Ptbp1 gene.
在另一优选例中,所述基因编辑蛋白选自下组:CasRx、CRISPR/Cas9,Cpf1、Cas9、Cas13a、Cas13b、Cas13c、或其组合。In another preferred embodiment, the gene editing protein is selected from the group consisting of CasRx, CRISPR/Cas9, Cpf1, Cas9, Cas13a, Cas13b, Cas13c, or a combination thereof.
在另一优选例中,所述基因编辑蛋白的来源选自下组:酿脓链球菌(Streptococcus pyogenes)、葡萄球菌(Staphylococcus aureus)、氨基酸球菌属(Acidaminococcus sp)、毛螺科菌(Lachnospiraceae bacterium)、黄化瘤胃球菌(Ruminococcus Flavefaciens)、或其组合。In another preferred embodiment, the source of the gene editing protein is selected from the group consisting of Streptococcus pyogenes, Staphylococcus aureus, Acidaminococcus sp, Lachnospiraceae bacterium ), Ruminococcus Flavefaciens, or a combination thereof.
在另一优选例中,所述Ptbp1来源于哺乳动物;优选地,来源于人、小鼠、大鼠、或兔;更优选地,来源于人。In another preferred example, the Ptbp1 is derived from mammals; preferably, it is derived from humans, mice, rats, or rabbits; more preferably, it is derived from humans.
在另一优选例中,所述Ptbp1基因包括野生型Ptbp1基因和突变型Ptbp1基因。In another preferred example, the Ptbp1 gene includes wild-type Ptbp1 gene and mutant Ptbp1 gene.
在另一优选例中,所述的突变型包括突变后编码蛋白的功能未发生改变的突变形式(即功能与野生型编码蛋白相同或基本相同)。In another preferred example, the mutant type includes a mutant form in which the function of the encoded protein is not changed after mutation (that is, the function is the same or substantially the same as that of the wild-type encoded protein).
在另一优选例中,所述的突变型Ptbp1基因编码的多肽与野生Ptbp1基因所编码的多肽相同或基本相同。In another preferred example, the polypeptide encoded by the mutant Ptbp1 gene is the same or substantially the same as the polypeptide encoded by the wild Ptbp1 gene.
在另一优选例中,所述的突变型Ptbp1基因包括与野生Ptbp1基因相比,同源性≥80%(较佳地≥90%,更佳地≥95%,更佳地,≥98%或99%)的多核苷酸。In another preferred example, the mutant Ptbp1 gene includes homology of ≥80% (preferably ≥90%, more preferably ≥95%, more preferably ≥98% compared with the wild Ptbp1 gene) Or 99%) polynucleotides.
在另一优选例中,所述的突变型Ptbp1基因包括在野生型Ptbp1基因的5'端和/或3'端截短或添加1-60个(较佳地1-30,更佳地1-10个)核苷酸的多核苷酸。In another preferred embodiment, the mutant Ptbp1 gene is included in the 5'end and/or 3'end of the wild-type Ptbp1 gene, truncated or added 1-60 (preferably 1-30, more preferably 1 -10) nucleotide polynucleotides.
在另一优选例中,所述的Ptbp1基因包括cDNA序列、基因组序列、或其组合。In another preferred example, the Ptbp1 gene includes a cDNA sequence, a genome sequence, or a combination thereof.
在另一优选例中,所述Ptbp1蛋白包括Ptbp1的活性片段或其衍生物。In another preferred embodiment, the Ptbp1 protein includes active fragments of Ptbp1 or derivatives thereof.
在另一优选例中,所述活性片段或其衍生物与Ptbp1的同源性至少为90%,优选为95%,更优选为98%、99%。In another preferred example, the homology of the active fragment or its derivative with Ptbp1 is at least 90%, preferably 95%, more preferably 98%, 99%.
在另一优选例中,所述活性片段或其衍生物至少具有80%、85%、90%、95%、100%的Ptbp1活性。In another preferred example, the active fragment or derivative thereof has at least 80%, 85%, 90%, 95%, 100% of Ptbp1 activity.
在另一优选例中,所述Ptbp1蛋白的氨基酸序列选自下组:In another preferred embodiment, the amino acid sequence of the Ptbp1 protein is selected from the following group:
(i)具有SEQ ID NO.:1所示氨基酸序列的多肽;(i) A polypeptide having the amino acid sequence shown in SEQ ID NO.:1;
(ii)将如SEQ ID NO.:1所示的氨基酸序列经过一个或几个(如1-10个)氨基酸残基的取代、缺失或添加而形成的,具有所述蛋白功能的、由(i)衍生的多肽;或(ii) The amino acid sequence shown in SEQ ID NO.: 1 is formed by the substitution, deletion or addition of one or several (e.g. 1-10) amino acid residues, which has the function of the protein and is formed by ( i) Derived polypeptide; or
(iii)氨基酸序列与SEQ ID NO.:1所示氨基酸序列的同源性≥90%(较佳地≥95%,更佳地≥98%或99%),具有所述蛋白功能的多肽。(iii) The homology between the amino acid sequence and the amino acid sequence shown in SEQ ID NO.:1 is ≥90% (preferably ≥95%, more preferably ≥98% or 99%), and a polypeptide having the protein function.
在另一优选例中,所述Ptbp1基因的核苷酸序列选自下组:In another preferred example, the nucleotide sequence of the Ptbp1 gene is selected from the following group:
(a)编码如SEQ ID NO.:1所示多肽的多核苷酸;(a) A polynucleotide encoding the polypeptide shown in SEQ ID NO.:1;
(b)序列如SEQ ID NO.:2所示的多核苷酸;(b) A polynucleotide whose sequence is shown in SEQ ID NO.: 2;
(c)核苷酸序列与SEQ ID NO.:2所示序列的同源性≥95%(较佳地≥98%,更佳地≥99%)的多核苷酸;(c) A polynucleotide whose nucleotide sequence has a homology of ≥95% (preferably ≥98%, more preferably ≥99%) with the sequence shown in SEQ ID NO.: 2;
(d)在SEQ ID NO.:2所示多核苷酸的5’端和/或3’端截短或添加1-60个(较佳地1-30,更佳地1-10个)核苷酸的多核苷酸;(d) Truncate or add 1-60 (preferably 1-30, more preferably 1-10) nuclei at the 5'end and/or 3'end of the polynucleotide shown in SEQ ID NO.: 2 Glycated polynucleotide;
(e)与(a)-(d)任一所述的多核苷酸互补的多核苷酸。(e) A polynucleotide complementary to any of the polynucleotides described in (a) to (d).
在另一优选例中,所述ptbp1蛋白如SEQ ID NO.:1所示。In another preferred embodiment, the ptbp1 protein is shown in SEQ ID NO.:1.
在另一优选例中,所述ptbp1蛋白的编码核酸如SEQ ID NO.:2所示。In another preferred embodiment, the nucleic acid encoding the ptbp1 protein is shown in SEQ ID NO.: 2.
在另一优选例中,所述ptbp1基因或其编码蛋白的抑制剂(如基因编辑蛋白)靶向的区域为ptbp1基因序列的第4758-4787位、和/或5381-5410位。In another preferred example, the region targeted by the ptbp1 gene or the inhibitor of the encoded protein (such as the gene editing protein) is the 4758-4787 and/or 5381-5410 positions of the ptbp1 gene sequence.
在另一优选例中,所述ptbp1基因或其编码蛋白的抑制剂抑制ptbp1的活性和/或表达量。In another preferred embodiment, the inhibitor of the ptbp1 gene or its encoded protein inhibits the activity and/or expression of ptbp1.
在另一优选例中,所述ptbp1基因或其编码蛋白的抑制剂的浓度(病毒的滴度)>1×10 13,较佳地,为1×10 13—1×10 14In another preferred embodiment, the concentration of the inhibitor gene or its encoded protein ptbp1 (virus titer)> 1 × 10 13, preferably, is 1 × 10 13 -1 × 10 14 .
在另一优选例中,所述ptbp1基因或其编码蛋白的抑制剂对ptbp1的活性和/或表达量的抑制率大于90%,较佳地,90%-95%。In another preferred example, the inhibitory rate of the ptbp1 gene or its encoded protein inhibitor on the activity and/or expression of ptbp1 is greater than 90%, preferably, 90%-95%.
在另一优选例中,所述抑制剂靶向脑组织的星形胶质细胞。In another preferred embodiment, the inhibitor targets astrocytes in brain tissue.
在另一优选例中,所述神经退行性疾病包括帕金森疾病。In another preferred embodiment, the neurodegenerative disease includes Parkinson's disease.
本发明第二方面提供了一种组合物,包括:The second aspect of the present invention provides a composition comprising:
(a)基因编辑蛋白或其表达载体,所述基因编辑蛋白选自下组:CasRx、CRISPR/Cas9、Cpf1、Cas9、Cas13a、Cas13b、Cas13c、或其组合;和(a) A gene editing protein or an expression vector thereof, the gene editing protein is selected from the group consisting of CasRx, CRISPR/Cas9, Cpf1, Cas9, Cas13a, Cas13b, Cas13c, or a combination thereof; and
(b)gRNA或其表达载体,所述gRNA是引导所述基因编辑蛋白特异性结合Ptbp1基因的RNA。(b) gRNA or an expression vector thereof, the gRNA is RNA that guides the gene editing protein to specifically bind to the Ptbp1 gene.
在另一优选例中,所述gRNA引导基因编辑蛋白特异性结合Ptbp1基因的mRNA。In another preferred embodiment, the gRNA guide gene editing protein specifically binds to the mRNA of the Ptbp1 gene.
在另一优选例中,所述组合物包括药物组合物。In another preferred embodiment, the composition includes a pharmaceutical composition.
在另一优选例中,所述组合物还包括:In another preferred embodiment, the composition further includes:
(c)其他预防和/或治疗神经退行性疾病的药物。(c) Other drugs to prevent and/or treat neurodegenerative diseases.
在另一优选例中,所述基因编辑蛋白的表达载体包括靶向脑组织星形胶质细胞的载体。In another preferred embodiment, the expression vector of the gene editing protein includes a vector targeting astrocytes of brain tissue.
在另一优选例中,所述表达载体包括病毒载体。In another preferred embodiment, the expression vector includes a viral vector.
在另一优选例中,所述的病毒载体选自下组:腺相关病毒(AAV)、腺病毒、慢病毒、逆转录病毒、疱疹病毒、SV40、痘病毒、或其组合。In another preferred example, the viral vector is selected from the following group: adeno-associated virus (AAV), adenovirus, lentivirus, retrovirus, herpes virus, SV40, poxvirus, or a combination thereof.
在另一优选例中,所述的载体选自下组:慢病毒、腺病毒、腺相关病毒(AAV)、或其组合,较佳地,所述载体为腺相关病毒(AAV)。In another preferred embodiment, the vector is selected from the following group: lentivirus, adenovirus, adeno-associated virus (AAV), or a combination thereof, preferably, the vector is adeno-associated virus (AAV).
在另一优选例中,所述组合物的剂型选自下组:冻干制剂、液体制剂、或其组合。In another preferred embodiment, the dosage form of the composition is selected from the group consisting of a lyophilized preparation, a liquid preparation, or a combination thereof.
在另一优选例中,所述组合物的剂型为液体制剂。In another preferred embodiment, the dosage form of the composition is a liquid preparation.
在另一优选例中,所述组合物的剂型为注射剂型。In another preferred embodiment, the dosage form of the composition is an injection dosage form.
在另一优选例中,其他预防和/或治疗神经退行性疾病的药物选自下组:多巴胺前体药物、非麦角类多巴胺受体激动剂、单胺氧化酶B抑制剂、或其组合。In another preferred embodiment, other drugs for preventing and/or treating neurodegenerative diseases are selected from the following group: dopamine prodrugs, non-ergot dopamine receptor agonists, monoamine oxidase B inhibitors, or combinations thereof.
在另一优选例中,所述组合物为细胞制剂。In another preferred embodiment, the composition is a cell preparation.
在另一优选例中,所述基因编辑蛋白的表达载体和gRNA的表达载体为同一载体或不同载体。In another preferred example, the expression vector of the gene editing protein and the expression vector of gRNA are the same vector or different vectors.
在另一优选例中,所述组分(a)与组分(b)的重量比为100:1-0.01:1,较佳地,10:1-0.1:1,更佳地,2:1-0.5:1。In another preferred example, the weight ratio of the component (a) to the component (b) is 100:1 to 0.01:1, preferably, 10:1 to 0.1:1, more preferably, 2: 1-0.5:1.
在另一优选例中,所述组合物中,所述组分(a)的含量为0.001%-99%,较佳地,0.1%-90%,更佳地,1%-70%。In another preferred embodiment, the content of the component (a) in the composition is 0.001%-99%, preferably, 0.1%-90%, more preferably, 1%-70%.
在另一优选例中,所述组合物中,所述组分(b)的含量为0.001%-99%,较佳地,0.1%-90%,更佳地,1%-70%。In another preferred embodiment, in the composition, the content of the component (b) is 0.001%-99%, preferably, 0.1%-90%, more preferably, 1%-70%.
在另一优选例中,所述组合物中,所述组分(c)的含量为1%-99%,较佳地,10%-90%,更佳地,30%-70%。In another preferred example, the content of the component (c) in the composition is 1%-99%, preferably, 10%-90%, more preferably, 30%-70%.
在另一优选例中,所述组合物中,所述组分(a)和组分(b)和任选的组分(c)占所述组合物总重的0.01-99.99wt%,较佳地0.1-90wt%,更佳地1-80wt%。In another preferred example, in the composition, the component (a), component (b) and optional component (c) account for 0.01-99.99 wt% of the total weight of the composition, which is greater than Preferably 0.1-90wt%, more preferably 1-80wt%.
本发明第三方面提供了一种药盒,包括:The third aspect of the present invention provides a medicine kit including:
(a1)第一容器,以及位于所述第一容器中的基因编辑蛋白或其表达载体,或含有基因编辑蛋白或其表达载体的药物,所述基因编辑蛋白选自下组:CasRx、CRISPR/Cas9、Cpf1、Cas9、Cas13a、Cas13b、Cas13c、或其组合;(a1) The first container, and the gene editing protein or its expression vector located in the first container, or a medicine containing the gene editing protein or its expression vector, the gene editing protein is selected from the group consisting of CasRx, CRISPR/ Cas9, Cpf1, Cas9, Cas13a, Cas13b, Cas13c, or a combination thereof;
(b1)第二容器,以及位于所述第二容器中的gRNA或其表达载体,或含有gRNA或其表达载体的药物,所述gRNA是引导基因编辑蛋白特异性结合Ptbp1基因的RNA。(b1) A second container, and gRNA or its expression vector, or a drug containing gRNA or its expression vector, in the second container, and the gRNA is RNA that guides the gene editing protein to specifically bind to the Ptbp1 gene.
在另一优选例中,所述gRNA引导基因编辑蛋白特异性结合Ptbp1基因的mRNA。In another preferred embodiment, the gRNA guide gene editing protein specifically binds to the mRNA of the Ptbp1 gene.
在另一优选例中,所述药盒还包括:In another preferred embodiment, the kit further includes:
(c1)第三容器,以及位于所述第三容器中的其他预防和/或治疗神经退行性疾病的药物,或含有其他预防和/或治疗神经退行性疾病的药物的药物。(c1) The third container, and other drugs for preventing and/or treating neurodegenerative diseases, or drugs containing other drugs for preventing and/or treating neurodegenerative diseases.
在另一优选例中,所述的第一容器和第二容器、第三容器是相同或不同的容器。In another preferred embodiment, the first container, the second container, and the third container are the same or different containers.
在另一优选例中,所述的第一容器的药物是含基因编辑蛋白或其表达载体的单方制剂。In another preferred embodiment, the medicine in the first container is a unilateral preparation containing gene editing protein or its expression vector.
在另一优选例中,所述的第二容器的药物是含gRNA或其表达载体的单方制剂。In another preferred embodiment, the medicine in the second container is a unilateral preparation containing gRNA or its expression vector.
在另一优选例中,所述的第三容器的药物是含其他预防和/或治疗神经退行性疾病的药物的单方制剂。In another preferred embodiment, the medicine in the third container is a single preparation containing other medicines for preventing and/or treating neurodegenerative diseases.
在另一优选例中,所述药物的剂型选自下组:冻干制剂、液体制剂、或其组合。In another preferred embodiment, the dosage form of the drug is selected from the group consisting of a lyophilized preparation, a liquid preparation, or a combination thereof.
在另一优选例中,所述药物的剂型为口服剂型或注射剂型。In another preferred embodiment, the dosage form of the drug is an oral dosage form or an injection dosage form.
在另一优选例中,所述的试剂盒还含有说明书。In another preferred embodiment, the kit also contains instructions.
本发明第四方面提供了一种本发明第二方面所述的组合物或本发明第三 方面所述药盒的用途,用于制备用于预防和/或治疗神经退行性疾病的药物。The fourth aspect of the present invention provides a composition according to the second aspect of the present invention or the use of the kit according to the third aspect of the present invention to prepare a medicine for preventing and/or treating neurodegenerative diseases.
在另一优选例中,所述组合物中,基因编辑蛋白或其表达载体的作用浓度(病毒滴度)>1×10 13,较佳地,1×10 13—1×10 14In another preferred embodiment, the composition, the concentration of the role of protein or gene expression vector editing (viral titer)> 1 × 10 13, preferably, 1 × 10 13 -1 × 10 14.
在另一优选例中,所述组合物中,所述gRNA或其表达载体的作用浓度(病毒滴度)>1×10 13,较佳地,1×10 13—1×10 14In another preferred embodiment, the composition or expression of the gRNA concentration of the carrier (viral titer)> 1 × 10 13, preferably, 1 × 10 13 -1 × 10 14.
在另一优选例中,所述药物组合物中,所述其他预防和/或治疗神经退行性疾病的药物的作用浓度(病毒滴度)>1×10 13,较佳地,1×10 13—1×10 14In another preferred example, in the pharmaceutical composition, the concentration (viral titer) of the other drugs for preventing and/or treating neurodegenerative diseases is> 1×10 13 , preferably, 1×10 13 —1×10 14 .
在另一优选例中,所述组合物或药盒包括(a)基因编辑蛋白或其表达载体;和(b)gRNA或其表达载体;和(c)任选的其他预防和/或治疗神经退行性疾病的药物;和(d)药学上可接受的载体。In another preferred embodiment, the composition or kit includes (a) gene editing protein or its expression vector; and (b) gRNA or its expression vector; and (c) optionally other prevention and/or treatment of nerves Drugs for degenerative diseases; and (d) pharmaceutically acceptable carriers.
在另一优选例中,所述组合物或药盒中,(a)基因编辑蛋白或其表达载体;和(b)gRNA或其表达载体;和(c)任选的其他预防和/或治疗神经退行性疾病的药物占所述组合物或药盒总重的0.01-99.99wt%,较佳地0.1-90wt%,更佳地1-80wt%。In another preferred embodiment, in the composition or kit, (a) gene editing protein or its expression vector; and (b) gRNA or its expression vector; and (c) optional other prevention and/or treatment The drug for neurodegenerative diseases accounts for 0.01-99.99% by weight of the total weight of the composition or the kit, preferably 0.1-90% by weight, more preferably 1-80% by weight.
本发明第五方面提供了一种促进星形胶质细胞分化为兴奋性神经元的方法,包括步骤:The fifth aspect of the present invention provides a method for promoting the differentiation of astrocytes into excitatory neurons, including the steps:
在Ptbp1基因或其编码蛋白抑制剂或本发明第二方面所述的组合物存在下,培养星形胶质细胞,从而促进星形胶质细胞分化为兴奋性神经元。In the presence of the Ptbp1 gene or its encoded protein inhibitor or the composition according to the second aspect of the present invention, astrocytes are cultured to promote the differentiation of astrocytes into excitatory neurons.
在另一优选例中,所述兴奋性神经元包括多巴胺神经元。In another preferred embodiment, the excitatory neurons include dopamine neurons.
在另一优选例中,所述星形胶质细胞包括纹状体星形胶质细胞。In another preferred embodiment, the astrocytes include striatal astrocytes.
在另一优选例中,所述星形胶质细胞为脑组织的星形胶质细胞。In another preferred embodiment, the astrocytes are astrocytes of brain tissue.
在另一优选例中,所述星形胶质细胞为体外的细胞。In another preferred embodiment, the astrocytes are cells in vitro.
在另一优选例中,所述Ptbp1基因或其编码蛋白抑制剂的作用浓度(病毒滴度)>1×10 13,较佳地,1×10 13—1×10 14In another preferred embodiment, the effect of the concentration of the gene or its encoded protein Ptbp1 inhibitors (viral titer)> 1 × 10 13, preferably, 1 × 10 13 -1 × 10 14.
在另一优选例中,所述权利要求2所述组合物的作用浓度(病毒滴度)>1×10 13,较佳地,1×10 13—1×10 14In another preferred embodiment, the effect of the concentration of composition 2 (titer) 1 × 10 13, preferably, 1 × 10 13 -1 × 10 14 claim>.
本发明第六方面提供了一种预防和/或治疗神经退行性疾病的方法,包括:The sixth aspect of the present invention provides a method for preventing and/or treating neurodegenerative diseases, including:
给需要的对象施用Ptbp1基因或其编码蛋白抑制剂、或本发明第二方面所述的组合物、或本发明第三方面所述的药盒。Ptbp1 gene or its encoded protein inhibitor, or the composition according to the second aspect of the present invention, or the kit according to the third aspect of the present invention is administered to a subject in need.
在另一优选例中,所述对象包括患有神经退行性疾病的人或非人哺乳动物。In another preferred embodiment, the subject includes a human or non-human mammal suffering from a neurodegenerative disease.
在另一优选例中,所述非人哺乳动物包括啮齿动物和灵长目动物,优选小鼠、大鼠、兔、猴。In another preferred embodiment, the non-human mammals include rodents and primates, preferably mice, rats, rabbits, and monkeys.
本发明第七方面提供了一种筛选预防和/或治疗神经退行性疾病的候选化合物的方法,所述方法包括步骤:The seventh aspect of the present invention provides a method for screening candidate compounds for the prevention and/or treatment of neurodegenerative diseases, the method comprising the steps:
(a)测试组中,在细胞的培养体系中添加测试化合物,并观察所述测试组的细胞中Ptbp1的表达量(E1)和/或活性(A1);在对照组中,在相同细胞的培养体系中不添加测试化合物,并观察对照组的所述细胞中Ptbp1的表达量(E0)和/或活性(A0);(a) In the test group, add the test compound to the cell culture system, and observe the expression (E1) and/or activity (A1) of Ptbp1 in the cells of the test group; in the control group, in the same cell No test compound is added to the culture system, and the expression (E0) and/or activity (A0) of Ptbp1 in the cells of the control group is observed;
其中,如果测试组中细胞的Ptbp1的表达量(E1)和/或活性(A1)显著低于对照组,就表明该测试化合物是对Ptbp1的表达和/或活性有抑制作用的预防和/或治疗神经退行性疾病的候选化合物。Wherein, if the expression level (E1) and/or activity (A1) of cells in the test group is significantly lower than that of the control group, it indicates that the test compound is a preventive and/or inhibitory effect on the expression and/or activity of Ptbp1 Candidate compounds for the treatment of neurodegenerative diseases.
在另一优选例中,所述的Ptbp1的表达量是通过qPCR而得出的。In another preferred example, the expression level of Ptbp1 is obtained by qPCR.
在另一优选例中,所述方法还包括步骤:In another preferred embodiment, the method further includes the steps:
(b)对于步骤(a)中获得的候选化合物,进一步测试其对星形胶质细胞向兴奋性神经元分化的促进作用;和/或进一步测试其对Ptbp1基因是否有下调的作用。(b) For the candidate compound obtained in step (a), further test its promoting effect on the differentiation of astrocytes into excitatory neurons; and/or further test whether it has a down-regulation effect on the Ptbp1 gene.
在另一优选例中,所述的方法包括步骤(c):将步骤(a)中所确定的候选化合物施用于哺乳动物模型,测定其对哺乳动物的影响。In another preferred embodiment, the method includes step (c): applying the candidate compound determined in step (a) to a mammalian model, and determining its effect on the mammal.
在另一优选例中,所述哺乳动物为患有神经退行性疾病的哺乳动物。In another preferred embodiment, the mammal is a mammal suffering from a neurodegenerative disease.
在另一优选例中,所述“显著低于”指E1/E0≤1/2,较佳地,≤1/3,更佳地≤1/4。In another preferred embodiment, the "significantly lower" means E1/E0≤1/2, preferably,≤1/3, more preferably≤1/4.
在另一优选例中,所述“显著低于”指A1/A0≤1/2,较佳地,≤1/3,更佳地≤1/4。In another preferred example, the "significantly lower" means that A1/A0≤1/2, preferably,≤1/3, more preferably≤1/4.
在另一优选例中,所述细胞包括星形胶质细胞。In another preferred embodiment, the cells include astrocytes.
在另一优选例中,所述细胞包括纹状体星形胶质细胞。In another preferred embodiment, the cells include striatal astrocytes.
在另一优选例中,所述细胞为体外培养的细胞。In another preferred embodiment, the cell is a cell cultured in vitro.
在另一优选例中,所述的方法是非诊断和非治疗性的。In another preferred embodiment, the method is non-diagnostic and non-therapeutic.
应理解,在本发明范围内中,本发明的上述各技术特征和在下文(如实施例)中具体描述的各技术特征之间都可以互相组合,从而构成新的或优选的技术方案。限于篇幅,在此不再一一累述。It should be understood that within the scope of the present invention, the above-mentioned technical features of the present invention and the technical features specifically described in the following (such as the embodiments) can be combined with each other to form a new or preferred technical solution. Due to space limitations, I will not repeat them here.
附图说明Description of the drawings
图1显示了利用CasRx介导的Ptbp1敲低将星形胶质细胞直接转化为有功 能的神经元。其中,Figure 1 shows the direct conversion of astrocytes into functional neurons using CasRx-mediated Ptbp1 knockdown. among them,
(a)利用CasRx介导Ptbp1敲低的流程示意图。(b)编码两个gRNA与CasRx的质粒能显著敲低星形胶质细胞的Ptbp1转录水,平n=2次重复。(c,d)注射流程示意图。载体1(AAV-GFAP-mCherry)编码了由星形胶质细胞特异性启动子GFAP驱动的mCherry,载体2(AAV-CasRx-Ptbp1)则携带着CasRx与两个gRNA。AAV-GFAP-mCherry和靶向Ptbp1的AAV-CasRx-Ptbp1两种载体一起被注射进右侧纹状体中。而左侧则只注射了作为对照的AAV-GFAP-mCherry。注射后还需要大约5-6周完成转分化。(e)注射后5周纹状体免疫荧光图.NeuN是成熟神经元标记物.白色箭头指示的是不与NeuN共标的mCherry信号,而橙色箭头指的是共标的NeuN与mCherry信号。比例尺:50μm。(f)在mCherry +细胞中mCherry +NeuN +细胞的百分比(n=6只小鼠;p<0.001,t=4.72)。(g)一个mCherry +NeuN +Tbr1 +细胞的代表。比例尺:20μm。(h,i)纹状体脑片中记录到的一个诱导产生的神经元的电信号的代表(n=8个细胞)。所有数值都采用平均数±s.e.m.表示。.***p<0.001,非成对t检验。 (a) Schematic diagram of the process of using CasRx to mediate Ptbp1 knockdown. (b) The plasmids encoding the two gRNAs and CasRx can significantly knock down the Ptbp1 transcription level of astrocytes, and n=2 repeats. (c,d) Schematic diagram of injection process. Vector 1 (AAV-GFAP-mCherry) encodes mCherry driven by astrocyte-specific promoter GFAP, and vector 2 (AAV-CasRx-Ptbp1) carries CasRx and two gRNAs. AAV-GFAP-mCherry and AAV-CasRx-Ptbp1 targeting Ptbp1 were injected into the right striatum together. On the left side, only AAV-GFAP-mCherry was injected as a control. It takes about 5-6 weeks to complete transdifferentiation after injection. (e) Immunofluorescence of the striatum at 5 weeks after injection. NeuN is a mature neuron marker. The white arrow indicates the mCherry signal that is not co-labeled with NeuN, and the orange arrow indicates the co-labeled NeuN and mCherry signals. Scale bar: 50μm. (f) Percentage of mCherry + NeuN + cells in mCherry + cells (n=6 mice; p<0.001, t=4.72). (g) A representative of mCherry + NeuN + Tbr1 + cells. Scale bar: 20μm. (h,i) Representative of the electrical signal of an induced neuron recorded in the brain slice of the striatum (n=8 cells). All values are expressed as mean±sem. .***p<0.001, unpaired t test.
图2显示了CasRx介导的Ptbp1敲低在6-OHDA诱导帕金森的小鼠模型中可以将星形胶质细胞重编程为多巴胺神经元。其中,(a)实验方案。在双侧MFB分别注射6-OHDA和盐水。大约一个月后后,向注射6-OHDA的一侧纹状体注射混合的AAV-CasRx-Ptbp1和AAV-GFAP-mCherry,并在注射后3-4周后做免疫染色和行为学检测。(b)多巴胺神经元的共聚焦图像。橙色箭头指示了mCherry与TH共标的信号。注:TH是多巴胺神经元标记物。比例尺:50μm(左),10μm(右)。(c)在注射区域TH +细胞中TH +/mCherry +细胞的百分比(n=3只小鼠)。所有数值都采用平均数±s.e.m.表示。 Figure 2 shows that CasRx-mediated Ptbp1 knockdown can reprogram astrocytes into dopamine neurons in a mouse model of 6-OHDA-induced Parkinsonism. Among them, (a) experimental program. 6-OHDA and saline were injected into bilateral MFB. About one month later, the side of the striatum where 6-OHDA was injected was injected with a mixture of AAV-CasRx-Ptbp1 and AAV-GFAP-mCherry, and immunostaining and behavioral tests were performed 3-4 weeks after the injection. (b) Confocal image of dopamine neurons. The orange arrow indicates the signal that mCherry is co-labeled with TH. Note: TH is a marker of dopamine neurons. Scale bars: 50μm (left), 10μm (right). (c) Percentage of TH + /mCherry + cells in TH + cells in the injection area (n=3 mice). All values are expressed as mean±sem.
图3显示了诱导多巴胺神经元可缓解PD小鼠模型的运动功能障碍。其中,(a)阿扑吗啡注射液引起的净旋转(圈数/20分钟)。(b)自发同侧接触与总接触次数的比值。(c)转杆试验。指示的是小鼠落下前停留在转杆上的时间(秒)。盐水组,n=12只小鼠;6-OHDA盐水组,n=14只小鼠。6-OHDA+EFS-CasRx-Ptbp1,n=12只小鼠。该数据采集自病毒注射后一个月后。单因素方差分析。Figure 3 shows that induction of dopamine neurons can alleviate motor dysfunction in PD mouse models. Among them, (a) the net rotation caused by apomorphine injection (number of turns/20 minutes). (b) The ratio of spontaneous contact on the same side to the total number of contacts. (c) Rotating rod test. It indicates the time (seconds) that the mouse stayed on the rotating rod before falling. Saline group, n=12 mice; 6-OHDA saline group, n=14 mice. 6-OHDA+EFS-CasRx-Ptbp1, n=12 mice. The data was collected one month after the virus injection. ANOVA.
图4显示了单侧注射6-OHDA导致多巴胺神经元与纤维的丢失。其中,(a)TH染色显示在一侧黑质(与注射6-OHDA的同侧)中TH +神经元(红色)的减少。比例尺:50μm。(b)多巴胺转运蛋白(DAT)染色表明与注射6-OHDA的同侧 多巴胺纤维(绿色)的减少。比例尺:1mm。 Figure 4 shows the loss of dopamine neurons and fibers caused by unilateral injection of 6-OHDA. Among them, (a) TH staining shows the reduction of TH + neurons (red) in the substantia nigra (the same side where 6-OHDA was injected) on one side. Scale bar: 50μm. (b) Dopamine transporter (DAT) staining shows the reduction of dopamine fibers (green) on the same side as the injection of 6-OHDA. Scale bar: 1mm.
具体实施方式detailed description
本发明人经过广泛而深入的研究,首次意外地发现,抑制脑组织中的星形胶质细胞的ptbp1基因或其编码蛋白的表达或活性,可有效诱导星形胶质细胞(如纹状体星形胶质细胞)向兴奋性神经元(如多巴胺神经元)的分化,从而预防和/或治疗神经退行性疾病(如帕金森病)。在此基础上,本发明人完成了本发明。After extensive and in-depth research, the inventors unexpectedly discovered for the first time that inhibiting the expression or activity of the ptbp1 gene or its encoded protein of astrocytes in brain tissue can effectively induce astrocytes (such as striatum Astrocytes) differentiate into excitatory neurons (such as dopamine neurons) to prevent and/or treat neurodegenerative diseases (such as Parkinson's disease). On this basis, the inventor completed the present invention.
星形胶质细胞Astrocyte
星形胶质细胞,是哺乳动物脑内数量最多的一类细胞。它们执行许多功能,包括生化支撑(例如形成血-脑屏障),为神经元提供营养,维持细胞外离子平衡,并参与脑和脊髓损伤后的修复和瘢痕形成。根据胶质丝的含量以及胞突的形状可将星形胶质细胞分为两种:纤维性星形胶质细胞(fibrous astrocyte)多分布在脑和脊髓的白质,突起细长,分支较少,胞质中含大量胶质丝;原浆性星形胶质细胞(protoplasmic astrocyte),多分布在灰质,细胞突起粗短,分支多。Astrocytes are the most abundant type of cells in the mammalian brain. They perform many functions, including biochemical support (such as forming a blood-brain barrier), providing nutrients for neurons, maintaining extracellular ion balance, and participating in repair and scar formation after brain and spinal cord injury. According to the content of glial filaments and the shape of cell processes, astrocytes can be divided into two types: fibrous astrocytes (fibrous astrocytes) are mostly distributed in the white matter of the brain and spinal cord, with slender protrusions and fewer branches , The cytoplasm contains a lot of glial filaments; protoplasmic astrocytes (protoplasmic astrocytes) are mostly distributed in the gray matter, with stubby cell processes and many branches.
可用于本发明的星形胶质细胞没有特别限制,包括哺乳动物中枢神经系统来源的各种星形胶质细胞,例如来源于纹状体、脊髓、背侧中脑或大脑皮层,较佳地,来源于纹状体。The astrocytes that can be used in the present invention are not particularly limited, and include various astrocytes derived from the central nervous system of mammals, such as from the striatum, spinal cord, dorsal midbrain or cerebral cortex, preferably , From the striatum.
多巴胺神经元Dopamine neuron
多巴胺能神经元(dopaminergic neuron)含有并释放多巴胺(dopamine,DA)作为神经递质的神经元。多巴胺属于儿茶酚胺类神经递质,在中枢神经系统中发挥重要的生物学作用,大脑内的多巴胺能神经元主要集中在中脑的黑质致密区(substantria nigra pars compacta,SNc)、腹侧被盖区(ventral tegmental area,VTA)、下丘脑和脑室周围。很多实验证实多巴胺能神经元与人体的多种疾病密切相关,最典型的就是帕金森疾病。Dopaminergic neuron (dopaminergic neuron) contains and releases dopamine (dopamine, DA) as a neurotransmitter. Dopamine is a catecholamine neurotransmitter and plays an important biological role in the central nervous system. Dopaminergic neurons in the brain are mainly concentrated in the substantria nigra pars compacta (SNc) of the midbrain and the ventral cover Area (ventral tegmental area, VTA), hypothalamus and periventricular. Many experiments have confirmed that dopaminergic neurons are closely related to many diseases of the human body, the most typical being Parkinson's disease.
神经退行性疾病Neurodegenerative diseases
神经退行性疾病是脑部和脊髓的神经元丧失所致的疾病。神经元是神经系 统最重要的组层部分,他的死亡会最终导致神经系统的功能障碍。病人在罹患神经退行性疾病之后,会出现行动或认知障碍,病情的发展往往导致诸多并发症,给患者的生活造成严重伤害。在临床上,神经退行性疾病主要包括有阿尔茨海默病、帕金森氏病、亨廷顿氏舞蹈症、肌萎缩性侧索硬化症、多发性硬化症等。目前对神经性退行性疾病只能做到缓解或者延缓疾病的进展,不能达到完全治愈的地步。帕金森病(PD)是一种严重的神经退行性疾病,其特征是中脑黑质多巴胺神经元的丧失。Neurodegenerative diseases are diseases caused by the loss of neurons in the brain and spinal cord. Neurons are the most important part of the nervous system, and their death will eventually lead to the dysfunction of the nervous system. After a patient suffers from a neurodegenerative disease, there will be mobility or cognitive impairment, and the development of the disease often leads to many complications, causing serious damage to the patient's life. Clinically, neurodegenerative diseases mainly include Alzheimer's disease, Parkinson's disease, Huntington's disease, amyotrophic lateral sclerosis, and multiple sclerosis. At present, the neurodegenerative diseases can only be relieved or delayed, and cannot be completely cured. Parkinson's disease (PD) is a serious neurodegenerative disease characterized by the loss of dopamine neurons in the substantia nigra of the midbrain.
基因编辑器Gene editor
在本发明中,所述基因编辑器包括DNA基因编辑器和RNA基因编辑器。在一优选实施方式中,本发明的基因编辑器包括基因编辑蛋白和任选的gRNA。In the present invention, the gene editor includes a DNA gene editor and an RNA gene editor. In a preferred embodiment, the gene editor of the present invention includes a gene editing protein and optionally gRNA.
基因编辑蛋白Gene editing protein
在本发明中,基因编辑蛋白的核苷酸可以通过基因工程技术来获得,如基因组测序、聚合酶链式反应(PCR)等,其氨基酸序列可由核苷酸序列推导而得到。所述野生型的基因编辑蛋白的来源包括(但并不限于):黄化瘤胃球菌(Ruminococcus Flavefaciens)、酿脓链球菌(Streptococcus pyogenes)、葡萄球菌(Staphylococcus aureus)、氨基酸球菌属(Acidaminococcus sp)、毛螺科菌(Lachnospiraceae bacterium)。In the present invention, the nucleotides of the gene editing protein can be obtained by genetic engineering techniques, such as genome sequencing, polymerase chain reaction (PCR), etc., and the amino acid sequence can be derived from the nucleotide sequence. The source of the wild-type gene editing protein includes (but is not limited to): Ruminococcus Flavefaciens, Streptococcus pyogenes, Staphylococcus aureus, and Acidaminococcus sp. , Lachnospiraceae bacterium (Lachnospiraceae bacterium).
在本发明的一个优选例中,所述基因编辑蛋白包括,但并不限于Cas13(如CasRx)、CRISPR/Cas9、Cpf1、SaCas9、Cas13a、Cas13b、Cas13c。In a preferred embodiment of the present invention, the gene editing protein includes, but is not limited to Cas13 (such as CasRx), CRISPR/Cas9, Cpf1, SaCas9, Cas13a, Cas13b, and Cas13c.
ptbp1蛋白和多核苷酸ptbp1 protein and polynucleotide
在本发明中,术语“本发明蛋白”、“ptbp1蛋白”、“ptbp1多肽”可互换使用,都指具有ptbp1氨基酸序列的蛋白或多肽。它们包括含有或不含起始甲硫氨酸的ptbp1蛋白。此外,该术语还包括全长的ptbp1及其片段。本发明所指的ptbp1蛋白包括其完整的氨基酸序列、其分泌蛋白、其突变体以及其功能上活性的片段。In the present invention, the terms "protein of the present invention", "ptbp1 protein" and "ptbp1 polypeptide" are used interchangeably, and all refer to a protein or polypeptide having an amino acid sequence of ptbp1. They include ptbp1 protein with or without starting methionine. In addition, the term also includes full-length ptbp1 and fragments thereof. The ptbp1 protein referred to in the present invention includes its complete amino acid sequence, its secreted protein, its mutant and its functionally active fragments.
ptbp1蛋白为多聚嘧啶区结合蛋白1,是一个RNA结合蛋白,调控着RNA剪接调控。同时也对RNA的其他功能起到非常关键的左右。The ptbp1 protein is a polypyrimidine domain binding protein 1, which is an RNA binding protein that regulates RNA splicing. At the same time, it also plays a very critical role in other functions of RNA.
在本发明中,术语“ptbp1基因”、“ptbp1多核苷酸”可互换使用,都指具有 ptbp1核苷酸序列的核酸序列。In the present invention, the terms "ptbp1 gene" and "ptbp1 polynucleotide" are used interchangeably, and both refer to a nucleic acid sequence having a ptbp1 nucleotide sequence.
人ptbp1基因的基因组全长14936bp(NCBI GenBank登录号为5725)。The genome of the human ptbp1 gene is 14936bp in length (NCBI GenBank accession number is 5725).
鼠ptbp1基因的基因组全长10004bp(NCBI GenBank登录号为19205)。The genome of the mouse ptbp1 gene is 10004bp in length (NCBI GenBank accession number is 19205).
人和鼠ptbp1,在DNA水平的相似性为88%,蛋白序列相似性为84%。需理解的是,当编码相同的氨基酸时,密码子中核苷酸的取代是可接受的。另外需理解的是,由核苷酸取代而产生保守的氨基酸取代时,核苷酸的变换也是可被接受的。The similarity of human and mouse ptbp1 at the DNA level is 88%, and the similarity of protein sequence is 84%. It should be understood that when encoding the same amino acid, the substitution of nucleotides in the codon is acceptable. In addition, it should be understood that when conservative amino acid substitutions are generated by nucleotide substitutions, nucleotide changes are also acceptable.
在得到了ptbp1的氨基酸片段的情况下,可根据其构建出编码它的核酸序列,并且根据核苷酸序列来设计特异性探针。核苷酸全长序列或其片段通常可以用PCR扩增法、重组法或人工合成的方法获得。对于PCR扩增法,可根据本发明所公开的ptbp1核苷酸序列,尤其是开放阅读框序列来设计引物,并用市售的cDNA库或按本领域技术人员已知的常规方法所制备的cDNA库作为模板,扩增而得有关序列。当序列较长时,常常需要进行两次或多次PCR扩增,然后再将各次扩增出的片段按正确次序拼接在一起。When the amino acid fragment of ptbp1 is obtained, a nucleic acid sequence encoding it can be constructed based on it, and specific probes can be designed based on the nucleotide sequence. The full-length nucleotide sequence or its fragments can usually be obtained by PCR amplification, recombination, or artificial synthesis. For the PCR amplification method, primers can be designed according to the ptbp1 nucleotide sequence disclosed in the present invention, especially the open reading frame sequence, and a commercially available cDNA library or a cDNA prepared by a conventional method known to those skilled in the art can be used. The library is used as a template to amplify the relevant sequences. When the sequence is long, it is often necessary to perform two or more PCR amplifications, and then splice the amplified fragments together in the correct order.
一旦获得了有关的序列,就可以用重组法来大批量地获得有关序列。这通常是将其克隆入载体,再转入细胞,然后通过常规方法从增殖后的宿主细胞中分离得到有关序列。Once the relevant sequence is obtained, the recombination method can be used to obtain the relevant sequence in large quantities. This usually involves cloning it into a vector, then transferring it into a cell, and then isolating the relevant sequence from the proliferated host cell by conventional methods.
此外,还可用人工合成的方法来合成有关序列,尤其是片段长度较短时。通常,通过先合成多个小片段,然后再进行连接可获得序列很长的片段。In addition, artificial synthesis methods can also be used to synthesize related sequences, especially when the fragment length is short. Usually, by first synthesizing multiple small fragments, and then ligating to obtain a very long fragment.
目前,已经可以完全通过化学合成来得到编码本发明蛋白(或其片段,衍生物)的DNA序列。然后可将该DNA序列引入本领域中已知的各种现有的DNA分子(如载体)和细胞中。At present, the DNA sequence encoding the protein (or fragment or derivative thereof) of the present invention can be obtained completely through chemical synthesis. The DNA sequence can then be introduced into various existing DNA molecules (such as vectors) and cells known in the art.
通过常规的重组DNA技术,可利用本发明的多核苷酸序列可用来表达或生产重组的ptbp1多肽。一般来说有以下步骤:Through conventional recombinant DNA technology, the polynucleotide sequence of the present invention can be used to express or produce recombinant ptbp1 polypeptide. Generally speaking, there are the following steps:
(1).用本发明的编码人ptbp1多肽的多核苷酸(或变异体),或用含有该多核苷酸的重组表达载体转化或转导合适的宿主细胞;(1) Transform or transduce suitable host cells with the polynucleotide (or variant) encoding human ptbp1 polypeptide of the present invention, or with a recombinant expression vector containing the polynucleotide;
(2).在合适的培养基中培养的宿主细胞;(2). Host cells cultured in a suitable medium;
(3).从培养基或细胞中分离、纯化蛋白质。(3). Separate and purify protein from culture medium or cells.
本发明中,ptbp1多核苷酸序列可插入到重组表达载体中。总之,只要能在宿主体内复制和稳定,任何质粒和载体都可以用。表达载体的一个重要特征是通常含有复制起点、启动子、标记基因和翻译控制元件。In the present invention, the ptbp1 polynucleotide sequence can be inserted into a recombinant expression vector. In short, any plasmid and vector can be used as long as it can replicate and stabilize in the host. An important feature of an expression vector is that it usually contains an origin of replication, a promoter, a marker gene, and translation control elements.
本领域的技术人员熟知的方法能用于构建含ptbp1编码DNA序列和合适的转录/翻译控制信号的表达载体。这些方法包括体外重组DNA技术、DNA合成技术、体内重组技术等。所述的DNA序列可有效连接到表达载体中的适当启动子上,以指导mRNA合成。表达载体还包括翻译起始用的核糖体结合位点和转录终止子。The methods well known to those skilled in the art can be used to construct an expression vector containing the ptbp1 coding DNA sequence and appropriate transcription/translation control signals. These methods include in vitro recombinant DNA technology, DNA synthesis technology, and in vivo recombination technology. The DNA sequence can be effectively linked to an appropriate promoter in the expression vector to guide mRNA synthesis. The expression vector also includes a ribosome binding site for translation initiation and a transcription terminator.
此外,表达载体优选地包含一个或多个选择性标记基因,以提供用于选择转化的宿主细胞的表型性状,如真核细胞培养用的二氢叶酸还原酶、新霉素抗性以及绿色荧光蛋白(GFP),或用于大肠杆菌的四环素或氨苄青霉素抗性。In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selecting transformed host cells, such as dihydrofolate reductase for eukaryotic cell culture, neomycin resistance, and green Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
包含上述的适当DNA序列以及适当启动子或者控制序列的载体,可以用于转化适当的宿主细胞,以使其能够表达蛋白质。A vector containing the above-mentioned appropriate DNA sequence and an appropriate promoter or control sequence can be used to transform an appropriate host cell so that it can express the protein.
宿主细胞可以是原核细胞,如细菌细胞;或是低等真核细胞,如酵母细胞;或是高等真核细胞,如哺乳动物细胞。代表性例子有:大肠杆菌,链霉菌属的细菌细胞;真菌细胞如酵母;植物细胞;昆虫细胞;动物细胞等。The host cell can be a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples include: Escherichia coli, bacterial cells of the genus Streptomyces; fungal cells such as yeast; plant cells; insect cells; animal cells, etc.
用重组DNA转化宿主细胞可用本领域技术人员熟知的常规技术进行。当宿主为原核生物如大肠杆菌时,能吸收DNA的感受态细胞可在指数生长期后收获,用CaCl 2法处理,所用的步骤在本领域众所周知。另一种方法是使用MgCl 2。如果需要,转化也可用电穿孔的方法进行。当宿主是真核生物,可选用如下的DNA转染方法:磷酸钙共沉淀法,常规机械方法如显微注射、电穿孔、脂质体包装等。 Transformation of host cells with recombinant DNA can be performed by conventional techniques well known to those skilled in the art. When the host is a prokaryotic organism such as Escherichia coli, competent cells that can absorb DNA can be harvested after the exponential growth phase and treated with the CaCl 2 method. The steps used are well known in the art. Another method is to use MgCl 2 . If necessary, transformation can also be performed by electroporation. When the host is a eukaryote, the following DNA transfection methods can be selected: calcium phosphate co-precipitation method, conventional mechanical methods such as microinjection, electroporation, liposome packaging, etc.
获得的转化子可以用常规方法培养,表达本发明的基因所编码的多肽。根据所用的宿主细胞,培养中所用的培养基可选自各种常规培养基。在适于宿主细胞生长的条件下进行培养。当宿主细胞生长到适当的细胞密度后,用合适的方法(如温度转换或化学诱导)诱导选择的启动子,将细胞再培养一段时间。The obtained transformants can be cultured by conventional methods to express the polypeptide encoded by the gene of the present invention. Depending on the host cell used, the medium used in the culture can be selected from various conventional mediums. The culture is carried out under conditions suitable for the growth of the host cell. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在上面的方法中的重组多肽可在细胞内、或在细胞膜上表达、或分泌到细胞外。如果需要,可利用其物理的、化学的和其它特性通过各种分离方法分离和纯化重组的蛋白。这些方法是本领域技术人员所熟知的。这些方法的例子包括但并不限于:常规的复性处理、用蛋白沉淀剂处理(盐析方法)、离心、渗透破菌、超处理、超离心、分子筛层析(凝胶过滤)、吸附层析、离子交换层析、高效液相层析(HPLC)和其它各种液相层析技术及这些方法的结合。The recombinant polypeptide in the above method can be expressed in the cell or on the cell membrane, or secreted out of the cell. If necessary, the physical, chemical, and other characteristics can be used to separate and purify the recombinant protein through various separation methods. These methods are well known to those skilled in the art. Examples of these methods include, but are not limited to: conventional renaturation treatment, treatment with protein precipitation agent (salting out method), centrifugation, osmotic cleavage, ultra-treatment, ultra-centrifugation, molecular sieve chromatography (gel filtration), adsorption layer Analysis, ion exchange chromatography, high performance liquid chromatography (HPLC) and other various liquid chromatography techniques and combinations of these methods.
腺相关病毒Adeno-associated virus
因腺相关病毒(Adeno-associated virus,AAV)较其他病毒载体小,无致病性,可转染正在分裂和未分裂的细胞等特性,基于AAV载体的针对遗传性疾病的基因治疗方法受到了广泛的关注。Because Adeno-associated virus (AAV) is smaller than other viral vectors, is non-pathogenic, and can transfect dividing and undivided cells, gene therapy methods for genetic diseases based on AAV vectors have been affected. Widespread concern.
腺相关病毒(adeno-associated virus,AAV),也称腺伴随病毒,属于微小病毒科依赖病毒属,是目前发现的一类结构最简单的单链DNA缺陷型病毒,需要辅助病毒(通常为腺病毒)参与复制。它编码两个末端的反向重复序列(ITR)中的cap和rep基因。ITRs对于病毒的复制和包装具有决定性作用。cap基因编码病毒衣壳蛋白,rep基因参与病毒的复制和整合。AAV能感染多种细胞。Adeno-associated virus (adeno-associated virus, AAV), also known as adeno-associated virus, belongs to the Parvoviridae dependent virus genus. It is the simplest type of single-stranded DNA-deficient virus found so far and requires a helper virus (usually Viruses) participate in replication. It encodes the cap and rep genes in the inverted repeat (ITR) at both ends. ITRs play a decisive role in virus replication and packaging. The cap gene encodes the viral capsid protein, and the rep gene is involved in virus replication and integration. AAV can infect a variety of cells.
重组腺相关病毒载体(rAAV)源于非致病的野生型腺相关病毒,由于其安全性好、宿主细胞范围广(分裂和非分裂细胞)、免疫源性低,在体内表达外源基因时间长等特点,被视为最有前途的基因转移载体之一,在世界范围内的基因治疗和疫苗研究中得到广泛应用。经过10余年的研究,重组腺相关病毒的生物学特性己被深入了解,尤其是其在各种细胞、组织和体内实验中的应用效果方面已经积累了许多资料。在医学研究中,rAAV被用于多种疾病的基因治疗的研究(包括体内、体外实验);同时作为一种有特点的基因转移载体,还广泛用于基因功能研究、构建疾病模型、制备基因敲除鼠等方面。Recombinant adeno-associated virus vector (rAAV) is derived from non-pathogenic wild-type adeno-associated virus. Due to its good safety, wide range of host cells (dividing and non-dividing cells), and low immunogenicity, it can express foreign genes in vivo. Long and other characteristics, it is regarded as one of the most promising gene transfer vectors and has been widely used in gene therapy and vaccine research worldwide. After more than 10 years of research, the biological characteristics of recombinant adeno-associated virus have been deeply understood, especially its application effects in various cells, tissues and in vivo experiments have accumulated a lot of data. In medical research, rAAV is used in the research of gene therapy for various diseases (including in vivo and in vitro experiments); at the same time, as a characteristic gene transfer vector, it is also widely used in gene function research, disease model construction, and gene preparation. Knockout mice and other aspects.
在本发明一个优选的实施例中,载体为重组AAV载体。AAV是相对较小的DNA病毒,其可以稳定和位点特异性方式整合到它们所感染的细胞的基因组中。它们能够感染一大系列的细胞而不对细胞生长、形态或分化产生任何影响,并且它们似乎并不涉及人体病理学。AAV基因组己被克隆、测序及表征。AAV在每个末端包含约145个碱基的反向末端重复序列(ITR)区域,其作为病毒的复制起点。该基因组的其余被分成两个带有衣壳化功能的重要区域:包含涉及病毒复制和病毒基因表达的rep基因的基因组左边部分;以及包含编码病毒衣壳蛋白的cap基因的基因组右边部分。In a preferred embodiment of the present invention, the vector is a recombinant AAV vector. AAVs are relatively small DNA viruses that can integrate into the genome of the cells they infect in a stable and site-specific manner. They can infect a large range of cells without any effect on cell growth, morphology or differentiation, and they do not seem to be involved in human pathology. The AAV genome has been cloned, sequenced and characterized. AAV contains an inverted terminal repeat (ITR) region of approximately 145 bases at each end, which serves as the origin of replication of the virus. The rest of the genome is divided into two important regions with encapsidation functions: the left part of the genome containing the rep gene involved in viral replication and viral gene expression; and the right part of the genome containing the cap gene encoding the viral capsid protein.
AAV载体可采用本领域的标准方法制备。任何血清型的腺相关病毒均是合适的。用于纯化载体的方法可见于例如美国专利No.6566118、6989264和6995006,它们的公开内容整体以引用方式并入本文。杂合载体的制备在例如PCT申请No.PCT/US2005/027091中有所描述,该申请的公开内容整体以引用方式并入本文。用于体外和体内转运基因的衍生自AAV的载体的使用己有描述(参见例如国际专利申请公布No.WO91/18088和WO93/09239;美国专利No.4,797,368、6,596,535和5,139,941,以及欧洲专利No.0488528,它们均整体以引用方式并入本文)。这些专利公布描述了其中rep和/或cap基因缺失并被所关注的基因替换的各种来源于AAV的构建体,以及这些构建体在体外(进入培养的细胞中)或体内(直接进入生物体)转运所关注的基因的用途。复制缺陷重组AAV可通过将以下质粒共转染进被人类辅助病毒(例如腺病毒)感染的细胞系而制备:所含的所关注核酸序列的侧翼为两 个AAV反向末端重复序列(ITR)区域的质粒,和携带AAV衣壳化基因(rep和cap基因)的质粒。然后通过标准技术纯化所产生的AAV重组体。AAV vectors can be prepared using standard methods in the art. Adeno-associated viruses of any serotype are suitable. Methods for purifying vectors can be found in, for example, U.S. Patent Nos. 6,566,118, 6,989,264, and 6,995,006, the disclosures of which are incorporated herein by reference in their entirety. The preparation of hybrid vectors is described in, for example, PCT Application No. PCT/US2005/027091, the disclosure of which is incorporated herein by reference in its entirety. The use of AAV-derived vectors for in vitro and in vivo gene transfer has been described (see, for example, International Patent Application Publication Nos. WO91/18088 and WO93/09239; U.S. Patent Nos. 4,797,368, 6,596,535 and 5,139,941, and European Patent No. 0488528, they are all incorporated herein by reference in their entirety). These patent publications describe various AAV-derived constructs in which the rep and/or cap genes are missing and replaced by the gene of interest, and these constructs are in vitro (into cultured cells) or in vivo (into the organism directly) ) The purpose of transporting the gene of interest. Replication-deficient recombinant AAV can be prepared by co-transfecting the following plasmids into a cell line infected with a human helper virus (such as adenovirus): the nucleic acid sequence of interest is flanked by two AAV inverted terminal repeats (ITR) Region plasmids, and plasmids carrying AAV encapsidation genes (rep and cap genes). The resulting AAV recombinants are then purified by standard techniques.
在一些实施方案中,重组载体被衣壳化到病毒粒子(例如包括但不限于AAV1、AAV2、AAV3、AAV4、AAV5、AAV6、AAV7、AAV8、AAV9、AAV10、AAV11、AAV12、AAV13、AAV14、AAV15和AAV16的AAV病毒粒子)中。因此,本公开包括含有本文所述的任何载体的重组病毒粒子(因其包含重组多核苷酸而为重组的)。产生这样的粒子的方法是本领域己知的,并在美国专利No.6,596,535中有所描述。In some embodiments, the recombinant vector is capsidized to viral particles (e.g., including but not limited to AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV13, AAV14, AAV15 And AAV virus particles of AAV16). Therefore, the present disclosure includes recombinant virus particles (recombinant because they contain recombinant polynucleotides) containing any of the vectors described herein. Methods of producing such particles are known in the art and are described in US Patent No. 6,596,535.
ptbp1抑制剂和药物组合物ptbp1 inhibitor and pharmaceutical composition
利用本发明蛋白,通过各种常规筛选方法,可筛选出与ptbp1基因或蛋白发生相互作用的物质,尤其是抑制剂等。Using the protein of the present invention, through various conventional screening methods, substances that interact with the ptbp1 gene or protein, especially inhibitors, can be screened out.
可用于本发明的ptbp1抑制剂(或拮抗剂)包括任何可以抑制ptbp1基因或其编码蛋白的表达和/或活性的物质。The ptbp1 inhibitor (or antagonist) that can be used in the present invention includes any substance that can inhibit the expression and/or activity of the ptbp1 gene or its encoded protein.
例如,所述ptbp1的抑制剂包括ptbp1的抗体、ptbp1核酸的反义RNA、siRNA、shRNA、miRNA、基因编辑器、或ptbp1的活性抑制剂。一种优选的ptbp1的抑制剂指的是能够抑制ptbp1表达的基因编辑器。For example, the inhibitor of ptbp1 includes an antibody of ptbp1, antisense RNA of ptbp1 nucleic acid, siRNA, shRNA, miRNA, gene editor, or an activity inhibitor of ptbp1. A preferred inhibitor of ptbp1 refers to a gene editor capable of inhibiting the expression of ptbp1.
优选的,本发明的ptbp1的抑制剂包括靶向ptbp1基因序列的第4758-4787位、和/或5381-5410位的抑制剂。本发明ptbp1抑制剂所作用的对象包括星形胶质细胞。Preferably, the inhibitors of ptbp1 of the present invention include inhibitors that target positions 4758-4787 and/or positions 5381-5410 of the ptbp1 gene sequence. The targets of the ptbp1 inhibitor of the present invention include astrocytes.
在一种优选的实施方式中,抑制ptbp1的方法和步骤包括利用ptbp1的抗体中和其蛋白,利用病毒(如腺相关病毒)携带的shRNA或siRNA或基因编辑器进行ptbp1基因的沉默。In a preferred embodiment, the methods and steps for inhibiting ptbp1 include using an antibody of ptbp1 to neutralize its protein, and using shRNA or siRNA or a gene editor carried by a virus (such as adeno-associated virus) to silence the ptbp1 gene.
对ptbp1的抑制率一般为达到至少50%以上的抑制,优选为60%、70%、80%、90%、95%的抑制,可以基于常规技术,例如流式细胞术、荧光定量PCR或Western blot等方法对ptbp1的抑制率进行控制和检测。The inhibition rate of ptbp1 is generally at least 50% or more inhibition, preferably 60%, 70%, 80%, 90%, 95% inhibition, which can be based on conventional techniques, such as flow cytometry, fluorescent quantitative PCR or Western Methods such as blot control and detect the inhibition rate of ptbp1.
本发明ptbp1蛋白的抑制剂(包括抗体、反义核酸、基因编辑器以及其他抑制剂),当在治疗上进行施用(给药)时,可抑制ptbp1蛋白的表达和/或活性,进而诱导星形胶质细胞分化为多巴胺神经元,从而预防和/或治疗神经退行性疾病。通常,可将这些物质配制于无毒的、惰性的和药学上可接受的水性载体介质中,其中pH通常约为5-8,较佳地pH约为6-8,尽管pH值可随被配制物质的性 质以及待治疗的病症而有所变化。配制好的药物组合物可以通过常规途径进行给药,其中包括(但并不限于):局部、肌内、腹膜内、静脉内、皮下、皮内、局部给药、自体细胞提取培养后回输等。The inhibitor of the ptbp1 protein of the present invention (including antibodies, antisense nucleic acids, gene editors and other inhibitors), when administered (administered) therapeutically, can inhibit the expression and/or activity of the ptbp1 protein, thereby inducing stars The glial cells differentiate into dopamine neurons, thereby preventing and/or treating neurodegenerative diseases. Generally, these substances can be formulated in a non-toxic, inert and pharmaceutically acceptable aqueous carrier medium, where the pH is usually about 5-8, preferably about 6-8, although the pH can be The nature of the formulated substance and the condition to be treated vary. The formulated pharmaceutical composition can be administered by conventional routes, including (but not limited to): local, intramuscular, intraperitoneal, intravenous, subcutaneous, intradermal, topical administration, autologous cell extraction and culture and reinfusion Wait.
本发明还提供了一种药物组合物,它含有安全有效量的本发明抑制剂(如抗体、基因编辑器、反义序列(如siRNA)、或抑制剂)以及药学上可接受的载体或赋形剂。这类载体包括(但并不限于):盐水、缓冲液、葡萄糖、水、甘油、乙醇、及其组合。药物制剂应与给药方式相匹配。本发明的药物组合物可以被制成针剂形式,例如用生理盐水或含有葡萄糖和其他辅剂的水溶液通过常规方法进行制备。诸如片剂和胶囊之类的药物组合物,可通过常规方法进行制备。药物组合物如针剂、溶液、片剂和胶囊宜在无菌条件下制造。活性成分的给药量是治疗有效量,例如每天约1微克-10毫克/千克体重。The present invention also provides a pharmaceutical composition, which contains a safe and effective amount of the inhibitor of the present invention (such as antibody, gene editor, antisense sequence (such as siRNA), or inhibitor) and a pharmaceutically acceptable carrier or excipient Shape agent. Such carriers include (but are not limited to): saline, buffer, glucose, water, glycerol, ethanol, and combinations thereof. The pharmaceutical preparation should match the mode of administration. The pharmaceutical composition of the present invention can be prepared in the form of injection, for example, prepared by conventional methods with physiological saline or an aqueous solution containing glucose and other adjuvants. Pharmaceutical compositions such as tablets and capsules can be prepared by conventional methods. Pharmaceutical compositions such as injections, solutions, tablets and capsules should be manufactured under sterile conditions. The dosage of the active ingredient is a therapeutically effective amount, for example, about 1 μg-10 mg/kg body weight per day.
本发明的主要优点包括:The main advantages of the present invention include:
(1)本发明首次发现,降低星形胶质细胞中的Ptbp1基因或其编码蛋白的表达或活性,可诱导星形胶质细胞向多巴胺神经元的分化,从而预防和/或治疗神经退行性疾病(如帕金森病)。(1) The present invention found for the first time that reducing the expression or activity of the Ptbp1 gene or its encoded protein in astrocytes can induce the differentiation of astrocytes into dopamine neurons, thereby preventing and/or treating neurodegeneration Diseases (such as Parkinson's disease).
(2)本发明首次发现,用基因编辑器(包括基因编辑蛋白和gRNA)抑制星形胶质细胞中的ptbp1的表达,可以使星形胶质细胞转分化为多巴胺神经元,进而为帕金森治疗提供了一种潜在的途径。(2) The present invention finds for the first time that using a gene editor (including gene editing protein and gRNA) to inhibit the expression of ptbp1 in astrocytes can make astrocytes transdifferentiate into dopamine neurons, which in turn is Parkinson’s Treatment provides a potential way.
(3)本发明首次发现,多巴胺神经元的诱导缓解了帕金森小鼠模型的运动功能障碍。(3) The present invention found for the first time that the induction of dopamine neurons alleviated the motor dysfunction in the Parkinsonian mouse model.
(4)本发明首次发现,RNA靶向的CRISPR系统CasRx可避免传统的CRISPR-Cas9编辑引起的永久性DNA改变的风险。因此,CasRx介导的RNA编辑为治疗各种疾病提供了一种有效的手段。(4) The present invention finds for the first time that the RNA-targeted CRISPR system CasRx can avoid the risk of permanent DNA changes caused by traditional CRISPR-Cas9 editing. Therefore, CasRx-mediated RNA editing provides an effective means for the treatment of various diseases.
下面结合具体实施例,进一步阐述本发明。应理解,这些实施例仅用于说明本发明而不用于限制本发明的范围。下列实施例中未注明具体条件的实验方法,通常按照常规条件,例如Sambrook等人,分子克隆:实验室手册(New York:Cold Spring Harbor Laboratory Press,1989)中所述的条件,或按照制造厂商所建议的条件。除非另外说明,否则百分比和份数是重量百分比和重量份数。The present invention will be further described below in conjunction with specific embodiments. It should be understood that these embodiments are only used to illustrate the present invention and not to limit the scope of the present invention. The experimental methods without specific conditions in the following examples usually follow conventional conditions, such as Sambrook et al., Molecular Cloning: Laboratory Manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the conditions described in manufacturing The conditions suggested by the manufacturer. Unless otherwise specified, percentages and parts are weight percentages and parts by weight.
除非特别说明,否则本发明实施例中所用材料和试剂均为市售产品。Unless otherwise specified, the materials and reagents used in the examples of the present invention are all commercially available products.
通用方法General method
动物伦理:动物的使用和饲养符合中国科学院神经科学研究所生物医学研究伦理委员会的指导原则。Animal ethics: The use and feeding of animals conform to the guidelines of the Biomedical Research Ethics Committee of the Institute of Neuroscience, Chinese Academy of Sciences.
gRNA序列:靶向Ptbp1的gRNA序列是:gRNA1:5'-tgtagatgggctgtccacgaagcactggcg-3';gRNA2:5'-gcttggagaagtcgatgcgcagcgtgcagc-3'。GRNA sequence: The gRNA sequence targeting Ptbp1 is: gRNA1: 5'-tgtagatgggctgtccacgaagcactggcg-3'; gRNA2: 5'-gcttggagaagtcgatgcgcagcgtgcagc-3'.
瞬时转染星形胶质细胞和qPCR:星形胶质细胞的分离和培养如前所述 1。简而言之,将星形胶质细胞接种在6孔板中。按照标准程序使用Lipofectamine 3000(Thermo Fisher Scientific),用3μg表达gRNA-CasRx-GFP的载体瞬时转染。对照质粒表达非靶向指导。瞬时转染后1-2天,通过流式荧光细胞分选(FACS)收集GFP阳性细胞并裂解作qPCR分析:首先使用Trizol(Ambion)提取RNA,然后使用逆转录试剂盒(用于qPCR的HiScript Q RT SuperMix,Vazyme,Biotech)将RNA逆转录为cDNA。通过AceQ qPCR SYBR Green Master Mix(Vazyme,Biotech)追踪扩增。Ptbp1 qPCR引物是:正向,5'-AGAGGAGGCTGCCAACACTA-3';反向,5'-GTCCAGGGTCACTGGGTAGA-3'。 Transient transfection of astrocytes and qPCR: isolated and cultured as previously described 1 astrocytes. In short, astrocytes were seeded in 6-well plates. Using Lipofectamine 3000 (Thermo Fisher Scientific) according to standard procedures, 3 μg of gRNA-CasRx-GFP expressing vector was used for transient transfection. The control plasmid expresses non-targeted guidance. 1-2 days after transient transfection, GFP-positive cells were collected by flow fluorescence cell sorting (FACS) and lysed for qPCR analysis: first use Trizol (Ambion) to extract RNA, and then use reverse transcription kit (HiScript for qPCR) Q RT SuperMix, Vazyme, Biotech) reverse transcription of RNA into cDNA. The amplification was followed by AceQ qPCR SYBR Green Master Mix (Vazyme, Biotech). Ptbp1 qPCR primers are: forward, 5'-AGAGGAGGCTGCCAACACTA-3'; reverse, 5'-GTCCAGGGTCACTGGGTAGA-3'.
立体定向注射:在该研究中使用到了AAV8(图1)和AAV-PhP.eb(图2和3)。立体定向注射(C57BL/6,1-3个月大)的方法如前所述 2。图1和图2,3中的AAV-CasRx-Ptbp1的滴度分别为约5×10e12(每次注射2μl)和1.6×10e13(每次注射2-3μl)。将AAV注入纹状体(AP+0.8mm,ML±1.6mm和DV-2.8mm)。 Stereotactic injection: AAV8 (Figure 1) and AAV-PhP.eb (Figures 2 and 3) were used in this study. Stereotactic injection (C57BL / 6,1-3 months) 2 method as described above. The titers of AAV-CasRx-Ptbp1 in Figure 1 and Figures 2, 3 are about 5×10e12 (2μl per injection) and 1.6×10e13 (2-3μl per injection). Inject AAV into the striatum (AP+0.8mm, ML±1.6mm and DV-2.8mm).
免疫荧光染色:免疫荧光染色实施于注射后5-6周(图1)或3-4周(图2和3)。灌注小鼠后取脑并用4%多聚甲醛(PFA)固定过夜,并在30%蔗糖中保持至少12小时。在包埋后冷冻切片,切片厚度为35μm。免疫荧光染色之前,用0.1M磷酸盐缓冲液(PB)彻底冲洗脑切片。一抗:兔多克隆NeuN抗体(Brain,1:500,#ABN78,Millipore),兔多克隆Tbr1抗体(#NG1854874,Millipore),小鼠TH抗体(1:300,MAB318,Millipore)以及兔DAT抗体(1:100,MAB369,Millipore)。二抗:在该研究中使用驴抗小鼠(#715-545-150,Jackson ImmunoResearch),驴抗兔(#711-545-152,Jackson ImmunoResearch)。在抗体孵育后,洗涤切片并用封片剂(Life Technology) 覆盖。Immunofluorescence staining: Immunofluorescence staining was performed 5-6 weeks (Figure 1) or 3-4 weeks (Figures 2 and 3) after injection. After the mice were perfused, their brains were taken and fixed with 4% paraformaldehyde (PFA) overnight, and kept in 30% sucrose for at least 12 hours. The sections were frozen after embedding, and the section thickness was 35 μm. Before immunofluorescence staining, the brain sections were washed thoroughly with 0.1M phosphate buffer (PB). Primary antibodies: rabbit polyclonal NeuN antibody (Brain, 1:500, #ABN78, Millipore), rabbit polyclonal Tbr1 antibody (#NG1854874, Millipore), mouse TH antibody (1:300, MAB318, Millipore) and rabbit DAT antibody (1:100, MAB369, Millipore). Secondary antibodies: Donkey anti-mouse (#715-545-150, Jackson ImmunoResearch) and donkey anti-rabbit (#711-545-152, Jackson ImmunoResearch) were used in this study. After the antibody incubation, the sections were washed and covered with mounting media (Life Technology).
电生理记录:,AAV注射后5-6周进行电生理学记录,方法如前所述 3。简言之,将小鼠麻醉并经心脏灌注后把脑子放入充有二氧化碳的NMDG人工脑脊液(aCSF)[NMDG aCSF(mM):NMDG 92,氯化钾2.5,磷酸二氢钠1.25,碳酸氢钠30,HEPES 20,葡萄糖25,硫脲2,抗坏血酸钠5)在室温下,丙酮酸钠3,氯化钙0.5,硫酸镁10]。灌注后提取脑并将其置于冰冷的NMDG aCSF溶液中30秒。修剪脑并以250-350μm的厚度切片,速度为0.04-0.05mm/s。将脑切片移入充满二氧化碳NMDG aCSF的皿中,并在32-34℃保持≤12分钟。在室温下将切片转移到充二氧化碳的HEPES aCSF的新皿中[HEPES,其中含有aCSF(mM):氯化钠92,氯化钾2.5,磷酸二氢钠1.25,碳酸氢钠30,HEPES 20,葡萄糖25,硫脲2,抗坏血酸钠5,丙酮酸钠3,氯化钙2,硫酸镁2]。1小时后将切片转移到记录皿中,该皿含有记录缓冲液[记录aCSF(mM):氯化钠119,氯化钾2.5,磷酸二氢钠1.25,碳酸氢钠24,葡萄糖12.5,氯化钙2,硫酸镁2]。在显微镜(Olympus BX51WI)下记录神经元样mCherry阳性细胞,并使用Clampex 10获得数据。 Electrophysiological recordings: after AAV injection electrophysiological recordings 5-6 weeks, 3 as previously described. In short, the mice were anesthetized and perfused into the heart, and their brains were put into carbon dioxide-filled NMDG artificial cerebrospinal fluid (aCSF) [NMDG aCSF(mM): NMDG 92, potassium chloride 2.5, sodium dihydrogen phosphate 1.25, bicarbonate Sodium 30, HEPES 20, glucose 25, thiourea 2, sodium ascorbate 5) at room temperature, sodium pyruvate 3, calcium chloride 0.5, magnesium sulfate 10]. After perfusion, the brain was extracted and placed in an ice-cold NMDG aCSF solution for 30 seconds. Trim the brain and slice at a thickness of 250-350 μm at a speed of 0.04-0.05 mm/s. Move the brain slices into a dish filled with carbon dioxide NMDG aCSF and keep it at 32-34°C for ≤12 minutes. Transfer the sections to a new dish of HEPES aCSF filled with carbon dioxide at room temperature [HEPES, which contains aCSF (mM): sodium chloride 92, potassium chloride 2.5, sodium dihydrogen phosphate 1.25, sodium bicarbonate 30, HEPES 20, Glucose 25, Thiourea 2, Sodium Ascorbate 5, Sodium Pyruvate 3, Calcium Chloride 2, Magnesium Sulfate 2]. After 1 hour, the slices were transferred to a recording dish containing a recording buffer [record aCSF (mM): sodium chloride 119, potassium chloride 2.5, sodium dihydrogen phosphate 1.25, sodium bicarbonate 24, glucose 12.5, chloride Calcium 2, magnesium sulfate 2]. The neuron-like mCherry positive cells were recorded under a microscope (Olympus BX51WI), and Clampex 10 was used to obtain the data.
6-OHDA PD小鼠模型6-OHDA PD mouse model
该研究过程基于以前的研究 4。腹腔注射成年C57BL/6小鼠(7-10周)。在麻醉前半小时注射25mg/kg盐酸地昔帕明(D3900,Sigma-Aldrich)。麻醉后,根据以下坐标向小鼠右侧内侧前脑束注射3μg 6-OHDA(H116,Sigma-Aldrich)或生理盐水:前后位(A/P)=-1.2mm,内外侧(M/L)=-1.1mm,背腹(D/V)=-5mm。手术后1小时给所有小鼠皮下注射1ml 4%葡萄糖-盐水溶液。小鼠在之后3周食用浸泡过的食物颗粒。 The study was based on previous studies 4. Adult C57BL/6 mice were injected intraperitoneally (7-10 weeks). Inject 25mg/kg desipramine hydrochloride (D3900, Sigma-Aldrich) half an hour before anesthesia. After anesthesia, 3μg 6-OHDA (H116, Sigma-Aldrich) or normal saline was injected into the right medial forebrain tract of the mouse according to the following coordinates: anteroposterior (A/P) = -1.2mm, medial and lateral (M/L) = -1.1mm, dorsoventricular (D/V) = -5mm. One hour after the operation, all mice were injected subcutaneously with 1 ml of 4% glucose-saline solution. The mice consumed the soaked food pellets for the next 3 weeks.
阿扑吗啡诱导的旋转试验Apomorphine-induced rotation test
小鼠在测试前10分钟腹腔注射0.5mg/kg阿扑吗啡(A4393,Sigma-Aldrich)。之后,将它们各自放置在不透明的圆柱体(直径30cm)中,由摄像机在其上方记录20分钟。旋转的定义为全身转向,其中一个后爪作为中心并且没有切换头部朝向。计算注射一侧和对侧旋转数。将数据量化为20分钟内的对侧逆转数。Mice were intraperitoneally injected with 0.5 mg/kg apomorphine (A4393, Sigma-Aldrich) 10 minutes before the test. After that, each of them was placed in an opaque cylinder (30 cm in diameter) and recorded on it by a camera for 20 minutes. Rotation is defined as a whole body turning with one hind paw as the center and no head orientation is switched. Calculate the number of rotations on the injection side and the contralateral side. The data was quantified as the number of contralateral reversals within 20 minutes.
圆筒试验Cylinder test
将每只小鼠轻轻放入玻璃烧杯(1000ml)中,在其前面用相机记录10分 钟。分别计算注射侧和对侧爪触壁次数,并将数据量化为同侧触壁数与总触壁数的比率。Each mouse was gently put into a glass beaker (1000 ml), and the camera was recorded for 10 minutes in front of it. Calculate the number of wall touches on the injection side and the contralateral paw respectively, and quantify the data as the ratio of the number of wall touches on the same side to the total number of wall touches.
转杆试验Rotating rod test
将所有小鼠训练2天并在第3天进行测试。在第1天,在转杆上以4圈/分钟的固定速度训练小鼠4次,每次300秒。在第2天和第3天,以4至40圈/分钟的加速训练或测试小鼠4次。将小鼠在脱落前在杆上停留的时间记录为停留期,并且使用3个最长停留期的平均值进行分析。All mice were trained for 2 days and tested on the third day. On the first day, the mice were trained 4 times on a rotating rod at a fixed speed of 4 laps/min, each for 300 seconds. On the 2nd and 3rd days, the mice were trained or tested 4 times at an acceleration of 4 to 40 laps/min. The time the mouse stayed on the rod before falling off was recorded as the stay period, and the average of the 3 longest stay periods was used for analysis.
统计分析:由s.e.m.设置误差线,以非成对双尾t检验或单因素方差分析计算统计学显着性(p<0.05)。所有实验均随机制定,未使用统计学方法预确定样本量,但我们的样本量参考了先前文献中的报道 5。假设数据分布正常但未经正式检验。数据收集和分析并未在盲实验条件下进行。 Statistical analysis: set error bars by sem, and calculate statistical significance by unpaired two-tailed t test or one-way analysis of variance (p<0.05). All experiments were randomized to develop, not to use statistical methods to determine the pre-sample size, but our sample size reference 5 reported previously in the literature. It is assumed that the data distribution is normal but not formally tested. Data collection and analysis were not performed under blind experimental conditions.
实施例1:通过CasRx敲低Ptbp1可以直接将星形胶质细胞转化为有功能的神经元Example 1: Knockdown of Ptbp1 by CasRx can directly convert astrocytes into functional neurons
为了实现对Ptbp1的有效敲低,分别设计了两个靶向Ptbp1的4号和7号外显子的gRNA,这两个gRNA由一个U6启动子驱动。接下来把这两个gRNA与CasRx基因一起被装载到一个单独的载体上,并且发现该载体能在转染2天后有效下调培养星形胶质细胞中的Ptbp1mRNA(图1a,b)。为了确实是否能否实现体内神经转分化,将AAV-CasRx-Ptbp1和AAV-GFAP-mCherry(用于标记星形胶质细胞)混合后注入纹状体(图1c,d)。在注射后5-6周,发现AAV-CasRx-Ptbp1注射纹状体中出现NeuN+/mCherry+细胞(16.2±3%,S.E.M.),但对侧没有注射AAV-CasRx-Ptbp1纹状体中则没有出现NeuN+/mCherry+细胞(0%,S.E.M.),这表明CasRx成功介导星形胶质细胞转化成了神经元(图1e,f)。此外,大多数转化的神经元(NeuN+/mCherry+)和兴奋性神经元标记物Tbr1共染(75%在avarege,n=2小鼠)(图1g),说明转化的神经元大部分都是兴奋性神经元。为了检查所诱导的神经元是否有功能,对诱导成功的mCherry+神经元样细胞做了全细胞电生理记录。结果发现,所有记录的细胞(n=8个细胞)都能在电流钳模式(图1h)下响应去极化电流注入而产生动作电位,并在电压钳模式(图1i)下表现出自发的突触后电流,这表明转化产生的神经元可以接受功能性突触信号输入。In order to achieve effective knockdown of Ptbp1, two gRNAs targeting exons 4 and 7 of Ptbp1 were designed respectively, and these two gRNAs were driven by a U6 promoter. Next, the two gRNAs and CasRx genes were loaded onto a separate vector, and it was found that the vector can effectively down-regulate Ptbp1mRNA in cultured astrocytes 2 days after transfection (Figure 1a, b). In order to confirm whether neurotransdifferentiation can be achieved in vivo, AAV-CasRx-Ptbp1 and AAV-GFAP-mCherry (used to label astrocytes) were mixed and injected into the striatum (Figure 1c, d). 5-6 weeks after injection, NeuN+/mCherry+ cells (16.2±3%, SEM) were found in the striatum of AAV-CasRx-Ptbp1 injection, but no AAV-CasRx-Ptbp1 in the striatum when the contralateral side was not injected NeuN+/mCherry+ cells (0%, SEM), which shows that CasRx successfully mediates the transformation of astrocytes into neurons (Figure 1e, f). In addition, most of the transformed neurons (NeuN+/mCherry+) were co-stained with the excitatory neuron marker Tbr1 (75% in avarege, n=2 mice) (Figure 1g), indicating that most of the transformed neurons are excited Sex neuron. In order to check whether the induced neurons are functional, a whole-cell electrophysiological record was made on the successfully induced mCherry+ neuron-like cells. It was found that all recorded cells (n=8 cells) could generate action potentials in response to the depolarizing current injection in the current clamp mode (Figure 1h), and showed spontaneous action in the voltage clamp mode (Figure 1i). Postsynaptic current, which indicates that the transformed neurons can receive functional synaptic signal input.
实施例2 CasRx介导的Ptbp1的敲低可以在6-OHDA诱导的帕金森小鼠模型中将星形胶质细胞转化为多巴胺神经元Example 2 CasRx-mediated knockdown of Ptbp1 can convert astrocytes into dopamine neurons in a 6-OHDA-induced Parkinson's mouse model
此外,为了探讨CasRx介导神经元重编程的治疗潜力,进一步在帕金森小鼠模型中研究了星形胶质细胞向多巴胺神经元转化的可能性。本发明使用的帕金森模型是通过将6-OHDA单侧注入到右前脑内侧束(MFB)中,促使同侧中脑腹侧多巴胺神经元丢失与纹状体去多巴胺能神经化(图4),其中图4a显示TH染色证明多巴胺神经元在OHDA注射同侧的黑质中被杀死;图4b显示DAT染色证明多巴胺神经元在纹状体的去神经化。注射6-OHDA三周后,将AAV-CasRx-Ptbp1和AAV-GFAP-mCherry混合注入同侧(与6-OHDA注射同侧)纹状体(图2a),注射AAV后3-4周,纹状体中开始出现Th+细胞(图2b)。超过80%(80±5%,S.E.M.)的Th+细胞为mCherry阳性(图2c),表明使用CasRx敲除Ptbp1可诱导星形细胞向多巴胺神经元的转化。In addition, in order to explore the therapeutic potential of CasRx-mediated neuronal reprogramming, the possibility of the transformation of astrocytes into dopamine neurons was further studied in the Parkinson's mouse model. The Parkinson's model used in the present invention is to inject 6-OHDA unilaterally into the right medial fascicle (MFB) to promote the loss of dopamine neurons in the ventral midbrain on the ipsilateral side and dedopaminergic neuronization of the striatum (Figure 4) Figure 4a shows that TH staining proves that dopamine neurons are killed in the substantia nigra on the same side of OHDA injection; Figure 4b shows that DAT staining proves that dopamine neurons are denervated in the striatum. Three weeks after 6-OHDA injection, AAV-CasRx-Ptbp1 and AAV-GFAP-mCherry were mixed and injected into the striatum on the same side (same side as 6-OHDA injection) (Figure 2a). 3-4 weeks after AAV injection, the striatum Th+ cells began to appear in the body (Figure 2b). More than 80% (80±5%, S.E.M.) of Th+ cells were positive for mCherry (Figure 2c), indicating that knocking out Ptbp1 with CasRx can induce astrocytes to transform into dopamine neurons.
实施例3诱导的多巴胺神经元能够缓解帕金森小鼠模型的运动障碍Example 3 The induced dopamine neurons can alleviate movement disorders in a mouse model of Parkinson's
本发明研究了在6-OHDA诱导的小鼠帕金森模型中,诱导产生的多巴胺神经元是否能够减轻帕金森的运动症状。分别通过药物诱导以及自发运动来评价小鼠的运动功能:我们首先测试了阿扑吗啡诱导的旋转行为,这是一种广泛用于测试单侧多巴胺神经元丢失后症状的行为范式,在AAV注射三周后,结果发现与注射6-OHDA后未经治疗的小鼠相比,经治疗的小鼠阿扑吗啡诱导的旋转显著降低(图3a);然后用圆柱试验和转杆试验分别测试了前肢运动不对称性和运动协调性,结果发现,经过治疗的小鼠表现出较低的圆筒同侧接触百分比(图3b)和较长的转杆持续时间(图3c)。The present invention studies whether the induced dopamine neurons can alleviate the motor symptoms of Parkinson in the 6-OHDA-induced mouse Parkinson's model. The motor function of mice was evaluated by drug induction and spontaneous exercise: We first tested apomorphine-induced rotation behavior, which is a behavioral paradigm widely used to test symptoms after unilateral dopamine neuron loss. After three weeks, it was found that compared with untreated mice after 6-OHDA injection, the apomorphine-induced rotation of the treated mice was significantly reduced (Figure 3a); then the cylindrical test and the rotating rod test were used to test separately Asymmetry and coordination of the forelimb movement, it was found that the treated mice showed a lower percentage of contact on the same side of the cylinder (Figure 3b) and a longer duration of rotation (Figure 3c).
这些结果表明,纹状体多巴胺神经元的诱导确实缓解了帕金森小鼠模型的运动功能障碍。These results indicate that the induction of dopamine neurons in the striatum indeed alleviates the motor dysfunction in the Parkinson's mouse model.
总结to sum up
本发明发现,仅仅通过对PTBP1的mRNA的敲低,纹状体的星形胶质细胞就能有效转化为多巴胺神经元,从而减轻帕金森样症状。RNA靶向的CRISPR系统CasRx可避免传统的CRISPR-Cas9编辑引起的永久性DNA改变的风险。因此,CasRx介导的RNA编辑为治疗各种疾病提供了一种有效的手段。The present invention found that only by knocking down the mRNA of PTBP1, striatum astrocytes can be effectively transformed into dopamine neurons, thereby reducing Parkinson-like symptoms. The RNA-targeted CRISPR system CasRx can avoid the risk of permanent DNA changes caused by traditional CRISPR-Cas9 editing. Therefore, CasRx-mediated RNA editing provides an effective means for the treatment of various diseases.
在本发明提及的所有文献都在本申请中引用作为参考,就如同每一篇文献被单独引用作为参考那样。此外应理解,在阅读了本发明的上述讲授内容之后,本领域技术人员可以对本发明作各种改动或修改,这些等价形式同样落于本申请所附权利要求书所限定的范围。All documents mentioned in the present invention are cited as references in this application, as if each document was individually cited as a reference. In addition, it should be understood that after reading the above teaching content of the present invention, those skilled in the art can make various changes or modifications to the present invention, and these equivalent forms also fall within the scope defined by the appended claims of the present application.

Claims (10)

  1. 一种Ptbp1基因或其编码蛋白抑制剂的用途,其特征在于,用于制备组合物或制剂,所述组合物或制剂用于预防和/或治疗神经退行性疾病。A use of Ptbp1 gene or its encoded protein inhibitor is characterized in that it is used to prepare a composition or preparation, and the composition or preparation is used to prevent and/or treat neurodegenerative diseases.
  2. 如权利要求1所述的用途,其特征在于,所述组合物或制剂还用于选自下组的一种或多种用途:The use according to claim 1, wherein the composition or preparation is further used for one or more uses selected from the following group:
    (a)诱导星形胶质细胞向兴奋性神经元转分化;(a) Inducing the transdifferentiation of astrocytes into excitatory neurons;
    (b)治疗哺乳动物的运动障碍。(b) Treatment of movement disorders in mammals.
  3. 如权利要求2所述的用途,其特征在于,所述星形胶质细胞来源于纹状体、脊髓、背侧中脑或大脑皮层,较佳地,所述的星形胶质细胞来源于纹状体。The use according to claim 2, wherein the astrocytes are derived from the striatum, spinal cord, dorsal midbrain or cerebral cortex, preferably, the astrocytes are derived from Striatum.
  4. 如权利要求2所述的用途,其特征在于,所述兴奋性神经元包括多巴胺神经元。The use according to claim 2, wherein the excitatory neurons comprise dopamine neurons.
  5. 如权利要求1所述的用途,其特征在于,所述抑制剂选自下组:抗体、小分子化合物、microRNA、siRNA、shRNA、基因编辑器、或其组合。The use according to claim 1, wherein the inhibitor is selected from the group consisting of antibodies, small molecule compounds, microRNA, siRNA, shRNA, gene editors, or combinations thereof.
  6. 一种组合物,其特征在于,包括:A composition characterized by comprising:
    (a)基因编辑蛋白或其表达载体,所述基因编辑蛋白选自下组:CasRx、CRISPR/Cas9、Cpf1、Cas9、Cas13a、Cas13b、Cas13c、或其组合;和(a) A gene editing protein or an expression vector thereof, the gene editing protein is selected from the group consisting of CasRx, CRISPR/Cas9, Cpf1, Cas9, Cas13a, Cas13b, Cas13c, or a combination thereof; and
    (b)gRNA或其表达载体,所述gRNA是引导基因编辑蛋白特异性结合Ptbp1基因的RNA。(b) gRNA or its expression vector, the gRNA is RNA that guides the gene editing protein to specifically bind to the Ptbp1 gene.
  7. 一种药盒,其特征在于,包括:A medicine box is characterized in that it comprises:
    (a1)第一容器,以及位于所述第一容器中的基因编辑蛋白或其表达载体,或含有基因编辑蛋白或其表达载体的药物,所述基因编辑蛋白选自下组:CasRx、CRISPR/Cas9、Cpf1、Cas9、Cas13a、Cas13b、Cas13c、或其组合;(a1) The first container, and the gene editing protein or its expression vector located in the first container, or a medicine containing the gene editing protein or its expression vector, the gene editing protein is selected from the group consisting of CasRx, CRISPR/ Cas9, Cpf1, Cas9, Cas13a, Cas13b, Cas13c, or a combination thereof;
    (b1)第二容器,以及位于所述第二容器中的gRNA或其表达载体,或含有gRNA或其表达载体的药物,所述gRNA是引导基因编辑蛋白特异性结合Ptbp1基因的RNA。(b1) A second container, and gRNA or its expression vector, or a drug containing gRNA or its expression vector, in the second container, and the gRNA is RNA that guides the gene editing protein to specifically bind to the Ptbp1 gene.
  8. 一种权利要求6所述的组合物或权利要求7所述药盒的用途,其特征在于,用于制备用于预防和/或治疗神经退行性疾病的药物。A use of the composition according to claim 6 or the kit according to claim 7, characterized in that it is used to prepare a medicine for preventing and/or treating neurodegenerative diseases.
  9. 一种促进星形胶质细胞分化为兴奋性神经元的方法,其特征在于,包括步骤:A method for promoting the differentiation of astrocytes into excitatory neurons is characterized in that it comprises the steps:
    在Ptbp1基因或其编码蛋白抑制剂或权利要求6所述组合物存在下,培养星形胶质细胞,从而促进星形胶质细胞分化为兴奋性神经元。In the presence of the Ptbp1 gene or its encoded protein inhibitor or the composition of claim 6, astrocytes are cultured to promote the differentiation of astrocytes into excitatory neurons.
  10. 一种筛选预防和/或治疗神经退行性疾病的候选化合物的方法,其特征在于,所述方法包括步骤:A method for screening candidate compounds for the prevention and/or treatment of neurodegenerative diseases, characterized in that the method comprises the steps:
    (a)测试组中,在细胞的培养体系中添加测试化合物,并观察所述测试组的细胞中Ptbp1的表达量(E1)和/或活性(A1);在对照组中,在相同细胞的培养体系中不添加测试化合物,并观察对照组的所述细胞中Ptbp1的表达量(E0)和/或活性(A0);(a) In the test group, add the test compound to the cell culture system, and observe the expression (E1) and/or activity (A1) of Ptbp1 in the cells of the test group; in the control group, in the same cell No test compound is added to the culture system, and the expression (E0) and/or activity (A0) of Ptbp1 in the cells of the control group is observed;
    其中,如果测试组中细胞的Ptbp1的表达量(E1)和/或活性(A1)显著低于对照组,就表明该测试化合物是对Ptbp1的表达和/或活性有抑制作用的预防和/或治疗神经退行性疾病的候选化合物。Wherein, if the expression level (E1) and/or activity (A1) of cells in the test group is significantly lower than that of the control group, it indicates that the test compound is a preventive and/or inhibitory effect on the expression and/or activity of Ptbp1 Candidate compounds for the treatment of neurodegenerative diseases.
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