WO2020233655A1 - Nucleic acid, pharmaceutical composition, conjugate, preparation method, and use - Google Patents

Nucleic acid, pharmaceutical composition, conjugate, preparation method, and use Download PDF

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WO2020233655A1
WO2020233655A1 PCT/CN2020/091489 CN2020091489W WO2020233655A1 WO 2020233655 A1 WO2020233655 A1 WO 2020233655A1 CN 2020091489 W CN2020091489 W CN 2020091489W WO 2020233655 A1 WO2020233655 A1 WO 2020233655A1
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nucleotide sequence
nucleotide
sirna
seq
nucleotides
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PCT/CN2020/091489
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French (fr)
Chinese (zh)
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张鸿雁
高山
康代武
田宝磊
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苏州瑞博生物技术股份有限公司
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Priority to CA3141372A priority Critical patent/CA3141372A1/en
Priority to KR1020217040159A priority patent/KR20220011656A/en
Priority to CN202311628556.0A priority patent/CN117701564A/en
Priority to EP20809702.2A priority patent/EP3974530A4/en
Priority to AU2020280439A priority patent/AU2020280439A1/en
Priority to US17/595,584 priority patent/US20230313195A1/en
Priority to CN202080007281.7A priority patent/CN113286888B/en
Priority to JP2021569135A priority patent/JP2022533841A/en
Publication of WO2020233655A1 publication Critical patent/WO2020233655A1/en

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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • C12N15/1137Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing against enzymes
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    • C12Y304/00Hydrolases acting on peptide bonds, i.e. peptidases (3.4)
    • C12Y304/21Serine endopeptidases (3.4.21)
    • C12Y304/21061Kexin (3.4.21.61), i.e. proprotein convertase subtilisin/kexin type 9

Definitions

  • the present disclosure relates to a nucleic acid, a pharmaceutical composition and an siRNA conjugate capable of inhibiting the expression of the proprotein convertase subtilisin/kexin type 9 (PCSK9) gene.
  • the present disclosure also relates to the preparation method and application of the nucleic acid, the pharmaceutical composition and the siRNA conjugate.
  • Dyslipidemia especially the persistently high low-density lipoprotein cholesterol (LDL-c), is an important risk factor that induces and promotes the occurrence and development of atherosclerosis. It is closely related to ischemic cardiovascular and cerebrovascular diseases and seriously threatens human health. .
  • the existing drugs for treating dyslipidemia mainly include statins, cholesterol absorption inhibitors, resins, probucol, fibrates, niacin and its derivatives.
  • the application of lipid-lowering drugs to lower plasma cholesterol levels can reduce the risk of cardiovascular and cerebrovascular diseases, but a considerable proportion of patients still do not reach the ideal blood lipid level.
  • PCSK9 proprotein convertase subtilisin/kexin type 9
  • RNAi RNA interference
  • siRNA conjugates provided in the present disclosure can specifically inhibit the expression of PCSK9 gene, and specifically target the liver, inhibit the expression of PCSK9 gene in the liver, and realize the treatment or prevention of high cholesterol Blood disease.
  • the inventors have also invented siRNA and pharmaceutical compositions with higher activity.
  • the present disclosure provides a siRNA conjugate having a structure as shown in formula (308):
  • n1 is an integer selected from 1-3, n3 is an integer selected from 0-4; m1, m2 or m3 are independently an integer selected from 2-10; R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently H, or are selected from the group consisting of C 1 -C 10 alkyl, C 1 -C 10 haloalkyl, and C 1 -C 10 alkoxy;
  • R 3 is a group represented by the formula A59:
  • E 1 is OH, SH or BH 2 ;
  • Nu is siRNA, the siRNA contains a sense strand and an antisense strand, each nucleotide in the siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleotide sequence I , The antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, the nucleotide sequence I and the The nucleotide sequence II is selected from the following group i)-vi):
  • nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1 are equal in length, and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 2
  • the nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
  • Z 1 is C
  • Z 2 is G
  • the nucleotide sequence I contains a nucleotide Z 3 whose position corresponds to Z 1
  • the nucleotide sequence II contains a nucleoside whose position corresponds to Z 2 Acid Z 4 , where Z 4 is the first nucleotide at the 5'end of the antisense strand;
  • nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 62
  • the nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
  • Z 5 is A
  • Z 6 is U
  • the nucleotide sequence I contains a nucleotide Z 7 whose position corresponds to Z 5
  • the nucleotide sequence II contains a nucleoside whose position corresponds to Z 6 Acid Z 8 , said Z 8 being the first nucleotide at the 5'end of the antisense strand;
  • nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121 are the same in length and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 122
  • nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
  • Z 9 is A
  • Z 10 is U
  • the nucleotide sequence I contains the nucleotide Z 11 whose position corresponds to Z 9
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 10 Acid Z 12 , where Z 12 is the first nucleotide at the 5'end of the antisense strand;
  • nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 182
  • nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
  • Z 13 is U
  • Z 14 is A
  • the nucleotide sequence I contains the nucleotide Z 15 whose position corresponds to Z 13
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 14 Acid Z 16 , where Z 16 is the first nucleotide at the 5'end of the antisense strand;
  • nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 242
  • nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
  • Z 17 is U
  • Z 18 is A
  • the nucleotide sequence I contains the nucleotide Z 19 whose position corresponds to Z 17
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 18 Acid Z 20 , said Z 20 being the first nucleotide at the 5'end of the antisense strand;
  • nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 302
  • the nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
  • Z 21 is A
  • Z 22 is U
  • the nucleotide sequence I contains the nucleotide Z 23 whose position corresponds to Z 21
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 22 Acid Z 24 , said Z 24 being the first nucleotide at the 5'end of the antisense strand;
  • M 1 represents the targeting group
  • the present disclosure provides an siRNA capable of inhibiting PCSK9 gene expression.
  • the siRNA contains a sense strand and an antisense strand, and each nucleotide in the sense strand and the antisense strand is independently It is a fluorinated modified nucleotide or a non-fluorinated modified nucleotide; the sense strand contains a nucleotide sequence I, the antisense strand contains a nucleotide sequence II, and the nucleotide sequence I And the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, and the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and follow the 5'end to 3 The direction of the end, in the sense strand, the nucleotides at positions 7, 8, and 9 of the nucleotide sequence I are fluorinated modified nucleotides, and the nucleosides at the remaining positions
  • the present disclosure provides a pharmaceutical composition containing the siRNA of the present disclosure and a pharmaceutically acceptable carrier.
  • the present disclosure provides an siRNA conjugate containing the siRNA provided in the present disclosure and a conjugating group conjugated to the siRNA.
  • the present disclosure provides that the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure are used in the preparation of drugs for the treatment and/or prevention of diseases or physiological conditions caused by abnormal expression of PCSK9 gene the use of.
  • the present disclosure provides a method for treating and/or preventing diseases or physiological conditions caused by abnormal expression of the PCSK9 gene, the method comprising applying an effective amount of the siRNA and/or pharmaceutical composition of the present disclosure and/or Or the siRNA conjugate is administered to a subject in need.
  • the present disclosure provides a method for inhibiting PCSK9 gene expression in liver cells, the method comprising combining an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure with the liver. Cell contact.
  • the present disclosure provides a kit that contains the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure.
  • siRNA, pharmaceutical composition and siRNA conjugate provided in the present disclosure have good stability, high PCSK9 mRNA inhibitory activity, low off-target effect and toxicity, and/or can significantly treat or prevent the abnormal expression of PCSK9 gene.
  • the disease or physiological condition of the patient for example, hypercholesterolemia.
  • the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure shows excellent target mRNA inhibitory activity in in vitro cell experiments. In some embodiments, the siRNA, pharmaceutical composition, or siRNA conjugate provided by the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% in liver cells. Or 95% target mRNA inhibition rate.
  • the siRNA, pharmaceutical composition, or siRNA conjugate provided in the present disclosure may have higher stability and/or higher activity in vivo. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of target gene expression. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % PCSK9 gene expression inhibition rate.
  • the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of PCSK9 gene expression in the liver. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of PCSK9 gene expression in liver in animal models. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo.
  • the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure does not show significant off-target effects.
  • Off-target effects may be, for example, suppression of normal expression of genes other than target genes. It is believed that if the binding/inhibition of off-target gene expression is less than 50%, 40%, 30%, 20%, or 10% compared to the target gene effect, the off-target effect is not significant.
  • the present disclosure provides siRNA exhibited high inhibitory activity psiCHECK system, the target sequence between the IC 50 0.0194-0.0561nM.
  • the siRNA conjugate provided in the present disclosure is injected subcutaneously into a single injection of cynomolgus monkeys, at a dose of 9 mg/kg, relative to the 7th day before administration, and the NHP liver tissue PCSK9 on the 15th day after administration.
  • the inhibition rate of mRNA is 56-81%.
  • the siRNA conjugate provided in the present disclosure inhibits PCSK9 protein expression in serum more significantly, and the inhibition rate of PCSK9 protein expression in serum can reach more than 90% on the 14th day after administration.
  • the siRNA conjugate provided in the present disclosure can significantly inhibit serum LDL-c and CHO levels, especially during the 14th day to the 29th day after administration, the inhibition rate of LDL-c can be as high as 30% Above, even as high as 64%; it also has a higher inhibition rate for CHO, even as high as 35%.
  • a single administration of the siRNA conjugate provided in the present disclosure at a dose of 9 mg/kg can maintain an LDL-c inhibition rate higher than 50% for 11 weeks. No obvious toxicity was found in rats and mice.
  • the siRNA conjugate provided by the present disclosure has a fast onset of action, a long time of action, significant inhibition of target mRNA expression, can effectively reduce the content of PCSK9 protein in serum, has a strong inhibitory effect on LDL-c and CHO in serum, and has a biological Safety performance is good.
  • siRNA, pharmaceutical composition and siRNA conjugate provided in the present disclosure can inhibit the expression of PCSK9 gene, effectively treat and/or prevent diseases or physiological conditions caused by abnormal expression of PCSK9 gene, and have good application prospects.
  • Figures 1A-1F are the dose-effect curves fitted according to the relative residual activity of the reporter gene Renilla in the psiCHECK system after transfection of different siRNAs (siRNA 1-6).
  • Figure 2 is a graph of normalized PCSK9 protein levels in serum at different time points after a single subcutaneous injection of 9 mg/kg of conjugate 1, 4 or 7 in cynomolgus monkeys.
  • Figure 3 is a graph showing normalized LDL-c levels in serum at different time points after a single subcutaneous injection of 9 mg/kg of conjugate 4 or 7 in cynomolgus monkeys.
  • Figure 4 is a graph of normalized CHO levels in serum at different time points after a single subcutaneous injection of 9 mg/kg of conjugate 4 or 7 in cynomolgus monkeys.
  • PCSK9 mRNA refers to mRNA with the sequence shown in Genbank registration number NM_174936.3.
  • target gene used in the present disclosure refers to a gene capable of transcribing the aforementioned PCSK9 mRNA, and the term “target mRNA” refers to the aforementioned PCSK9 mRNA.
  • the capital letters C, G, U, A, T represent the base composition of nucleotides;
  • the lowercase letter m represents that the adjacent nucleotide to the left of the letter m is a Oxy-modified nucleotides;
  • lowercase letter f indicates that the adjacent nucleotide to the left of the letter f is a fluoro-modified nucleotide;
  • lowercase letter s indicates the two adjacent nucleotides to the left and right of the letter s Between them is the phosphorothioate group connection;
  • P1 indicates that the adjacent nucleotide to the right of P1 is a 5'-phosphate nucleotide or a nucleotide modified by a 5'-phosphate analogue, and
  • the letter combination VP represents the letter The adjacent nucleotide on the right side of the combination VP is a nucleotide modified by vinyl phosphate, and the letter combination Ps indicates that the adjacent nucleotide on the right
  • fluoro-modified nucleotide refers to a nucleotide in which the hydroxyl group at the 2'position of the ribose group of the nucleotide is replaced by fluorine
  • non-fluoro-modified nucleotide refers to Nucleotides or nucleotide analogs formed by substituting a non-fluorine group for the hydroxyl group at the 2'position of the ribose group of a nucleotide.
  • Nucleotide analogue refers to a nucleic acid that can replace nucleotides, but has a structure different from adenine ribonucleotides, guanine ribonucleotides, cytosine ribonucleotides, uracil ribonucleotides or thymus The group of pyrimidine deoxyribonucleotides. Such as heteronucleotide, bridged nucleotide (BNA) or acyclic nucleotide.
  • the "methoxy-modified nucleotide” refers to a nucleotide formed by replacing the 2'-hydroxyl group of the ribose group with a methoxy group.
  • the expressions "complementary” or “reverse complement” can be used interchangeably, and have the meaning well known to those skilled in the art, that is, in a double-stranded nucleic acid molecule, the bases of one strand are connected to the other strand. The bases on are paired in a complementary manner.
  • the purine base adenine (A) is always paired with the pyrimidine base thymine (T) (or uracil (U) in RNA);
  • the purine base guanine (C) is always paired with the pyrimidine base Cytosine (G) matches.
  • Each base pair includes a purine and a pyrimidine.
  • mismatch in the art means that in a double-stranded nucleic acid, bases at corresponding positions are not paired in a complementary manner.
  • substantially reverse complementary means that there are no more than 3 base mismatches between the two nucleotide sequences involved; “substantially reverse complementary” “Means that there is no more than one base mismatch between two nucleotide sequences; “complete reverse complement” means that there is no base mismatch between two nucleotide sequences.
  • nucleotide difference between one nucleotide sequence and another nucleotide sequence means that the base type of the nucleotide at the same position has changed compared with the latter. For example, when one nucleotide base in the latter is A, when the corresponding nucleotide base at the same position in the former is U, C, G, or T, it is regarded as one of the two nucleotide sequences There is a nucleotide difference at this position. In some embodiments, when an abasic nucleotide or its equivalent is substituted for the nucleotide at the original position, it can also be considered that there is a nucleotide difference at that position.
  • the nucleoside monomer refers to the siRNA to be prepared Or the type and sequence of nucleotides in siRNA conjugates, modified or unmodified nucleoside phosphoramidite monomers used in phosphoramidite solid phase synthesis (unmodified or modified RNA phosphoramidites, sometimes RNA phosphoramidites are also called Nucleoside phosphoramidites) .
  • Phosphoramidite solid phase synthesis is a method used in RNA synthesis well known to those skilled in the art.
  • the nucleoside monomers used in the present disclosure are all commercially available.
  • conjugate means that two or more chemical moieties each having a specific function are connected to each other in a covalent manner; correspondingly, “conjugate” is Refers to the compound formed by covalent linkage between the various chemical parts.
  • siRNA conjugate refers to a compound formed by covalently linking one or more chemical moieties with specific functions to siRNA.
  • siRNA conjugate of the present disclosure is also referred to simply as “conjugate”.
  • An siRNA conjugate should be understood as a general term for multiple siRNA conjugates or an siRNA conjugate represented by a certain chemical formula according to the context.
  • conjuggated molecule should be understood as a specific compound that can be conjugated to siRNA through a reaction, and finally form the siRNA conjugate of the present disclosure.
  • alkyl refers to straight and branched chains having a specified number of carbon atoms, the number is usually 1 to 20 carbon atoms, such as 1 to 10 carbon atoms, such as 1 to 8 Or 1 to 6 carbon atoms.
  • C 1 -C 6 alkyl groups include straight and branched chain alkyl groups of 1 to 6 carbon atoms.
  • alkyl residue having a specific number of carbons it is intended to cover all branched and straight chain forms having that number of carbons; therefore, for example, "butyl” means including n-butyl, sec-butyl , Isobutyl and tert-butyl; "propyl” includes n-propyl and isopropyl.
  • Alkylene is a subset of alkyl and refers to residues that are the same as alkyl but have two points of attachment.
  • alkenyl refers to an unsaturated branched or unbranched alkyl group having at least one carbon-carbon double bond, which is obtained from adjacent carbon atoms of the parent alkyl group. Obtained by removing one molecule of hydrogen. The group can be in the cis or trans configuration of the double bond.
  • alkenyl groups include but are not limited to: vinyl; propenyl, such as prop-1-en-1-yl, prop-1-en-2-yl, prop-2-en-1-yl (allyl Group), prop-2-en-2-yl; butenyl, such as but-1-en-1-yl, but-1-en-2-yl, 2-methylprop-1-ene-1- But-2-en-1-yl, but-2-en-2-yl, but-1,3-dien-1-yl, but-1,3-dien-2-yl, etc.
  • alkenyl groups have 2 to 20 carbon atoms, while in other embodiments, 2 to 10, 2 to 8, or 2 to 6 carbon atoms.
  • Alkenylene is a subset of alkenyl and refers to the same residue as alkenyl but with two points of attachment.
  • alkynyl refers to an unsaturated branched or unbranched alkyl group having at least one carbon-carbon triple bond, which is obtained from adjacent carbon atoms of the parent alkyl group. Obtained by removing two molecules of hydrogen.
  • Typical alkynyl groups include but are not limited to: ethynyl; propynyl, such as prop-1-yn-1-yl, prop-2-yn-1-yl; butynyl, such as but-1-yn- 1-yl, but-1-yn-3-yl, but-3-yn-1-yl, etc.
  • the alkynyl group has 2 to 20 carbon atoms, and in other embodiments, 2 to 10, 2 to 8, or 2 to 6 carbon atoms.
  • Alkynylene is a subset of alkynyl and refers to residues that are the same as alkynyl but have two points of attachment.
  • alkoxy refers to an alkyl group with a specified number of carbon atoms connected through an oxygen bridge, for example, methoxy, ethoxy, propoxy, isopropoxy, n-butoxy, S-butoxy, tert-butoxy, pentyloxy, 2-pentyloxy, isopentyloxy, neopentyloxy, hexyloxy, 2-hexyloxy, 3-hexyloxy, 3-methyl Pentyloxy and so on.
  • Alkoxy groups generally have 1 to 10, 1 to 8, 1 to 6, or 1 to 4 carbon atoms connected by oxygen bridges.
  • aryl refers to a group derived from an aromatic monocyclic or polycyclic hydrocarbon ring system by removing hydrogen atoms from ring carbon atoms.
  • the aromatic monocyclic or polycyclic hydrocarbon ring system contains only hydrogen atoms and 6 to 18 carbon atoms, wherein at least one ring in the ring system is completely unsaturated, that is, contains a ring according to Hückel's theory, Delocalized (4n+2) ⁇ -electron system.
  • Aryl groups include, but are not limited to, phenyl, fluorenyl, and naphthyl groups.
  • Arylene is a subset of aryl and refers to residues that are the same as aryl but have two points of attachment.
  • halogen substituent or halogen refers to fluoro, chloro, bromo or iodo, and the term “halogen” includes fluoro, chloro, bromo or iodo.
  • haloalkyl refers to an alkyl group as defined above in which the specified number of carbon atoms is replaced by one or more halogen atoms up to the maximum allowable number.
  • haloalkyl include, but are not limited to, trifluoromethyl, difluoromethyl, 2-fluoroethyl, or pentafluoroethyl.
  • Heterocyclyl refers to a stable 3- to 18-membered non-aromatic cyclic group containing 2-12 carbon atoms and 1-6 heteroatoms selected from nitrogen, oxygen or sulfur. Unless otherwise specified in the specification, heterocyclic groups are monocyclic, bicyclic, tricyclic, or tetracyclic ring systems, and may include fused or bridged ring systems. The heteroatoms in the heterocyclic group may be optionally oxidized. One or more nitrogen atoms (if present) are optionally quaternized. The heterocyclic group is partially saturated or fully saturated. The heterocyclic group can be attached to the rest of the molecule through any ring atom.
  • heterocyclic groups include, but are not limited to: dioxanyl, thienyl[1,3]dithianyl (thienyl[1,3]dithianyl), decahydroisoquinolinyl, imidazolinyl, imidazolidine Group, isothiazolidinyl, isoxazolidinyl, morpholinyl, octahydroindolyl, octahydroisoindolyl, 2-oxapiperazinyl, 2-oxapiperidinyl, 2-oxa Pyrrolidinyl, oxazolidinyl, piperidinyl, piperazinyl, 4-piperidinone, pyrrolidinyl, pyrazolidinyl, quinuclidinyl, thiazolidinyl, tetrahydrofuranyl, trithianyl (trithianyl) ), tetrahydropyranyl, thiomorph
  • Heteroaryl refers to a group derived from a 3- to 18-membered aromatic ring radical, containing 2 to 17 carbon atoms and 1 to 6 heteroatoms selected from nitrogen, oxygen and sulfur.
  • a heteroaryl group can be a monocyclic, bicyclic, tricyclic or tetracyclic ring system, wherein at least one ring in the ring system is fully unsaturated, that is, contains a cyclic delocalization according to Hückel's theory (4n +2) ⁇ -electron system.
  • Heteroaryl groups include fused or bridged ring systems. The heteroatoms in the heteroaryl group are optionally oxidized.
  • heteroaryl group is attached to the rest of the molecule through any ring atom.
  • heteroaryl groups include, but are not limited to: azepinyl, acridinyl, benzimidazolyl, benzindolyl, 1,3-benzodiaxazolyl, benzofuranyl, benzene Oxazolyl, benzo[d]thiazolyl, benzothiadiazolyl, benzo[b][1,4]dioxepinyl (benzo[b][1,4]dioxepinyl), benzo[ b][1,4]oxazinyl (benzo[b][1,4]oxazinyl), 1,4-benzodioxanyl (1,4-benzodioxanyl), benzonaphthofuranyl, benzo Oxazolyl, benzodioxolyl, benzodioxin
  • hydroxyl protecting groups can be used in this disclosure.
  • the protecting group makes the chemical functionality insensitive to specific reaction conditions, and can be added to and removed from the functional group in the molecule without substantially damaging the rest of the molecule.
  • Representative hydroxyl protecting groups are disclosed in Beaucage et al., Tetrahedron 1992, 48, 2223-2311, and Greene and Wuts, Protective Groups in Organic Synthesis, Chapter 2, 2d, John Wiley & Sons, New York, 1991, for reference The above-mentioned documents are incorporated into this article in their entirety.
  • the protecting group is stable under basic conditions, but can be removed under acidic conditions.
  • non-exclusive examples of hydroxyl protecting groups that can be used herein include dimethoxytrityl (DMT), monomethoxytrityl, 9-phenylxanthene-9-yl (Pixyl) or 9-(p-methoxyphenyl)xanthene-9-yl (Mox).
  • non-exclusive examples of hydroxyl protecting groups that can be used herein include Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-dimethoxy Trityl) or TMTr (4,4',4"-trimethoxytrityl).
  • subject refers to any animal, such as a mammal or marsupial.
  • Subjects of the present disclosure include, but are not limited to, humans, non-human primates (for example, rhesus monkeys or other types of macaques), mice, pigs, horses, donkeys, cattle, sheep, rats, or any kind of poultry .
  • treatment refers to a method of obtaining beneficial or desired results, including but not limited to therapeutic benefits.
  • “Therapeutic benefit” means eradicating or improving the underlying barriers being treated.
  • therapeutic benefits are obtained by eradicating or improving one or more physical symptoms associated with the underlying disorder, thereby observing improvement in the subject, although the subject may still be afflicted by the underlying disorder.
  • prevention refers to methods of obtaining beneficial or desired results, including but not limited to preventive benefits.
  • siRNA conjugates or pharmaceutical compositions can be administered to subjects who are at risk of suffering from a specific disease, or to subjects who report one or more physiological symptoms of the disease, even if the disease is possible The diagnosis has not yet been made.
  • the present disclosure provides six siRNAs that can inhibit PCSK9 gene expression.
  • the siRNA of the present disclosure contains a nucleotide group as a basic structural unit, and those skilled in the art know that the nucleotide group contains a phosphate group, a ribose group and a base, which will not be repeated here.
  • the siRNA of the present disclosure contains a sense strand and an antisense strand, the length of the sense strand and the antisense strand are the same or different, the length of the sense strand is 19-23 nucleotides, and the length of the antisense strand is 19-26 Nucleotides.
  • the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure can be 19/19, 19/20, 19/21, 19/22, 19/23, 19/24, 19/25, 19/26, 20/20, 20/21, 20/22, 20/23, 20/24, 20/25, 20/26, 21/20, 21/21, 21/22, 21/23, 21/24, 21/ 25, 21/26, 22/20, 22/21, 22/22, 22/23, 22/24, 22/25, 22/26, 23/20, 23/21, 23/22, 23/23, 23/24, 23/25 or 23/26.
  • the length ratio of the siRNA sense strand and antisense strand is 19/21, 21/23, or 23/25.
  • the siRNA may be the first siRNA.
  • the first siRNA contains a sense strand and an antisense strand, each nucleotide in the first siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 1 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 2 The length is equal, and no more than 3 nucleotide differences:
  • Z 1 is C
  • Z 2 is G
  • the nucleotide sequence I contains a nucleotide Z 3 whose position corresponds to Z 1
  • the nucleotide sequence II contains a nucleoside whose position corresponds to Z 2 Acid Z 4
  • the Z 4 is the first nucleotide at the 5'end of the antisense strand.
  • positional correspondence refers to the same position in the nucleotide sequence from the same end of the nucleotide sequence.
  • the first nucleotide at the 3'end of the nucleotide sequence I is the nucleotide whose position corresponds to the first nucleotide at the 3'end of SEQ ID NO:1.
  • the sense strand only includes nucleotide sequence I
  • the antisense strand only includes nucleotide sequence II.
  • nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1, and/or the nucleotide sequence II and SEQ ID NO:1 ID NO: No more than one nucleotide difference between the nucleotide sequences shown in 2.
  • the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 2 includes the difference at position Z 4 , and Z 4 is selected from A, U or C. In some embodiments, the nucleotide difference is a difference at the Z 4 position, and Z 4 is selected from A, U, or C. In some embodiments, Z 3 is a nucleotide that is complementary to Z 4 .
  • the siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
  • the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary; the substantially reverse complement refers to two nuclei There are no more than 3 base mismatches between the nucleotide sequences; the substantially reverse complementation refers to the presence of no more than 1 base mismatch between two nucleotide sequences; complete reverse complementarity It means that there is no base mismatch between two nucleotide sequences.
  • nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 3
  • nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 4:
  • Z 4 is the first nucleotide at the 5'end of the antisense strand
  • Z 3 is selected from A, U, G or C
  • Z 4 is a nucleotide complementary to Z 3 ; in some embodiments Among them, Z 3 is C and Z 4 is G.
  • the sense strand further contains a nucleotide sequence III
  • the antisense strand further contains a nucleotide sequence IV.
  • the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II.
  • the nucleotide sequence IV is substantially reverse-complementary or completely reverse-complementary to the second nucleotide sequence
  • the second nucleotide sequence refers to the sequence in the target mRNA with the SEQ ID NO: 1 represents a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence and has the same length as the nucleotide sequence IV.
  • the length of the nucleotide sequence III and the nucleotide sequence IV are both 1 nucleotide, the base of the nucleotide sequence III is C, and the base of the nucleotide sequence IV is G ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
  • the base composition of acid sequence III is CC, and the base composition of nucleotide sequence IV is GG; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of nucleotide sequences III and IV Both are 3 nucleotides.
  • the base composition of nucleotide sequence III is CCC, and the base composition of nucleotide sequence IV is GGG; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is ACCC, the base composition of nucleotide sequence IV is GGGU; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is CC , The base composition of nucleotide sequence IV is GG; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
  • nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
  • the siRNA may be a second siRNA.
  • the second siRNA contains a sense strand and an antisense strand, each nucleotide in the second siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 61 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 62 The length is equal, and no more than 3 nucleotide differences:
  • Z 5 is A
  • Z 6 is U
  • the nucleotide sequence I contains a nucleotide Z 7 whose position corresponds to Z 5
  • the nucleotide sequence II contains a nucleoside whose position corresponds to Z 6 Acid Z 8
  • the Z 8 is the first nucleotide at the 5'end of the antisense strand.
  • the sense strand only includes nucleotide sequence I
  • the antisense strand only includes nucleotide sequence II.
  • nucleotide sequence I there is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61, and/or the nucleotide sequence II and SEQ ID NO: No more than one nucleotide difference between the nucleotide sequences shown in 62.
  • the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 62 includes the difference at the Z 8 position, and Z 8 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 8 position, and Z 8 is selected from A, C, or G. In some embodiments, Z 7 is a nucleotide that is complementary to Z 8 .
  • the siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
  • nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
  • nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 63
  • nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 64:
  • Z 8 is the first nucleotide at the 5'end of the antisense strand
  • Z 7 is selected from A, U, G, or C
  • Z 8 is a nucleotide complementary to Z 7 ; in some embodiments Among them, Z 7 is A and Z 8 is U.
  • the sense strand further contains a nucleotide sequence III
  • the antisense strand further contains a nucleotide sequence IV.
  • the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
  • Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
  • the second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 61 in the target mRNA and has the same length as the nucleotide sequence IV .
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is U, and the base of the nucleotide sequence IV is A ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
  • the base composition of acid sequence III is GU, and the base composition of nucleotide sequence IV is AC; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
  • the base composition of nucleotide sequence III is GGU, and the base composition of nucleotide sequence IV is ACC; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is GGGU, the base composition of nucleotide sequence IV is ACCC; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is GU , The base composition of nucleotide sequence IV is AC; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
  • nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
  • the third siRNA is the third siRNA
  • the siRNA may be a third siRNA.
  • the third siRNA contains a sense strand and an antisense strand, each nucleotide in the third siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I and the nucleotide sequence shown in SEQ ID NO: 121 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 122 The length is equal, and no more than 3 nucleotide differences:
  • Z 9 is A
  • Z 10 is U
  • the nucleotide sequence I contains the nucleotide Z 11 whose position corresponds to Z 9
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 10 Acid Z 12
  • the Z 12 is the first nucleotide at the 5'end of the antisense strand.
  • the sense strand only includes nucleotide sequence I
  • the antisense strand only includes nucleotide sequence II.
  • nucleotide sequence I there is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121, and/or the nucleotide sequence II and SEQ ID NO: 122 has no more than 1 nucleotide difference between the nucleotide sequences shown.
  • the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 122 includes the difference at position Z 12 , and Z 12 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 12 position, and Z 12 is selected from A, C, or G. In some embodiments, Z 11 is a nucleotide that is complementary to Z 12 .
  • the siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
  • nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
  • nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 123
  • nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 124:
  • Z 12 is the first nucleotide at the 5'end of the antisense strand
  • Z 11 is selected from A, U, G, or C
  • Z 12 is a nucleotide complementary to Z 11 ; in some embodiments Among them, Z 11 is A and Z 12 is U.
  • the sense strand further contains a nucleotide sequence III
  • the antisense strand further contains a nucleotide sequence IV.
  • the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
  • Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
  • the second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 121 in the target mRNA and has the same length as the nucleotide sequence IV .
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
  • the base composition of acid sequence III is AG, and the base composition of nucleotide sequence IV is CU; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
  • the base composition of nucleotide sequence III is UAG, and the base composition of nucleotide sequence IV is CUA; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AUAG, the base composition of nucleotide sequence IV is CUAU; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AG , The base composition of nucleotide sequence IV is CU; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
  • nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
  • the siRNA may be the fourth siRNA.
  • the fourth siRNA contains a sense strand and an antisense strand, and each nucleotide in the fourth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 181 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 182 The length is equal, and no more than 3 nucleotide differences:
  • Z 13 is U
  • Z 14 is A
  • the nucleotide sequence I contains the nucleotide Z 15 whose position corresponds to Z 13
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 14 Acid Z 16
  • the Z 16 is the first nucleotide at the 5'end of the antisense strand.
  • the sense strand only includes nucleotide sequence I
  • the antisense strand only includes nucleotide sequence II.
  • nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181, and/or the nucleotide sequence II and SEQ ID NO: There is no more than one nucleotide difference between the nucleotide sequences shown in 182.
  • the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 182 includes the difference at position Z 16 , and Z 16 is selected from U, C or G. In some embodiments, the nucleotide difference is a difference at the Z 16 position, and Z 16 is selected from U, C, or G. In some embodiments, Z 15 is a nucleotide that is complementary to Z 16 .
  • the siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
  • nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
  • nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 183
  • nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 184:
  • Z 16 is the first nucleotide at the 5'end of the antisense strand
  • Z 15 is selected from A, U, G or C
  • Z 16 is a nucleotide complementary to Z 15 ; in some embodiments Among them, Z 15 is U and Z 16 is A.
  • the sense strand further contains a nucleotide sequence III
  • the antisense strand further contains a nucleotide sequence IV.
  • the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
  • Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
  • This second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 181 in the target mRNA and has the same length as the nucleotide sequence IV .
  • the length of the nucleotide sequence III and the nucleotide sequence IV are both 1 nucleotide, the base of the nucleotide sequence III is C, and the base of the nucleotide sequence IV is G ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
  • the base composition of acid sequence III is AC
  • the base composition of nucleotide sequence IV is GU; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
  • the base composition of nucleotide sequence III is GAC, and the base composition of nucleotide sequence IV is GUC; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AGAC, the base composition of nucleotide sequence IV is GUCU; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AC , The base composition of nucleotide sequence IV is GU; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
  • nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
  • the siRNA may be the fifth siRNA.
  • the fifth siRNA contains a sense strand and an antisense strand, each nucleotide in the fifth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I and the nucleotide sequence shown in SEQ ID NO: 241 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 242 The length is equal, and no more than 3 nucleotide differences:
  • Z 17 is U
  • Z 18 is A
  • the nucleotide sequence I contains the nucleotide Z 19 whose position corresponds to Z 17
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 18 Acid Z 20
  • the Z 20 is the first nucleotide at the 5'end of the antisense strand.
  • the sense strand only includes nucleotide sequence I
  • the antisense strand only includes nucleotide sequence II.
  • nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241, and/or the nucleotide sequence II and SEQ ID NO: 242 shows no more than one nucleotide difference between the nucleotide sequences.
  • the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 242 includes the difference at position Z 20 , and Z 20 is selected from U, C or G. In some embodiments, the difference is a difference between the nucleotide at position 20 Z, Z 20 is selected from U, C or G. In some embodiments, Z 19 is a nucleotide that is complementary to Z 20 .
  • the siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
  • nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
  • nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 243
  • nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 244:
  • Z 20 is the first nucleotide at the 5'end of the antisense strand
  • Z 19 is selected from A, U, G or C
  • Z 20 is a nucleotide complementary to Z 19 ; in some embodiments Among them, Z 19 is U and Z 20 is A.
  • the sense strand further contains a nucleotide sequence III
  • the antisense strand further contains a nucleotide sequence IV.
  • the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
  • Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
  • the second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 241 and has the same length as the nucleotide sequence IV in the target mRNA .
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
  • the base composition of acid sequence III is UG, and the base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
  • the base composition of nucleotide sequence III is CUG, and the base composition of nucleotide sequence IV is CAG; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UCUG, the base composition of nucleotide sequence IV is CAGA; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UG , The base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
  • nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
  • the siRNA may be a sixth siRNA.
  • the sixth siRNA contains a sense strand and an antisense strand, each nucleotide in the sixth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 301 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 302 The length is equal, and no more than 3 nucleotide differences:
  • Z 21 is A
  • Z 22 is U
  • the nucleotide sequence I contains the nucleotide Z 23 whose position corresponds to Z 21
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 22 Acid Z 24
  • the Z 24 is the first nucleotide at the 5'end of the antisense strand.
  • the sense strand only includes nucleotide sequence I
  • the antisense strand only includes nucleotide sequence II.
  • nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301, and/or the nucleotide sequence II and SEQ ID NO: 302 shows no more than one nucleotide difference between the nucleotide sequences.
  • the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 302 includes the difference at position Z 24 , and Z 24 is selected from A, C or G. In some embodiments, the difference is a difference between the nucleotide at position 24 Z, Z 24 is selected from A, C or G. In some embodiments, Z 23 is a nucleotide complementary to Z 24 .
  • the siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
  • nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
  • nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 303
  • nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 304:
  • Z 24 is the first nucleotide at the 5'end of the antisense strand
  • Z 23 is selected from A, U, G, or C
  • Z 24 is a nucleotide complementary to Z 23 ; in some embodiments Among them, Z 23 is A and Z 24 is U.
  • the sense strand further contains a nucleotide sequence III
  • the antisense strand further contains a nucleotide sequence IV.
  • the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
  • Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
  • This second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 301 in the target mRNA and has the same length as the nucleotide sequence IV .
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end,
  • the base composition of acid sequence III is UG, and the base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
  • the base composition of nucleotide sequence III is AUG, and the base composition of nucleotide sequence IV is CAU; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UAUG, the base composition of nucleotide sequence IV is CAUA; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
  • the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UG , The base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
  • nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
  • nucleotide sequence V nucleic acid sequence
  • nucleotide modification in siRNA and modification sequence is applicable to any one of the above-mentioned first siRNA to sixth siRNA. That is, if there is no specific indication, the following description of siRNA should be regarded as describing the first siRNA, the second siRNA, the third siRNA, the fourth siRNA, the fifth siRNA and the sixth siRNA one by one. .
  • the siRNA also contains a nucleotide sequence V
  • the length of the sense strand and the antisense strand are different, and the antisense strand also contains a nucleotide sequence V.
  • the length of the nucleotide sequence V is 1 to 3 nucleotides.
  • the 3'end of the antisense strand constitutes the 3'overhang of the antisense strand.
  • the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure can be 19/20, 19/21, 19/22, 20/21, 20/22, 20/23, 21/22, 21/23 , 21/24, 22/23, 22/24, 22/25, 23/24, 23/25 or 23/26.
  • the length of the nucleotide sequence V is 2 nucleotides. Therefore, the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure may be 19/21, 21/23, or 23. /25.
  • Each nucleotide in the nucleotide sequence V can be any nucleotide.
  • the nucleotide sequence V is two consecutive thymine deoxyribonucleotides ( dTdT) or two consecutive uracil ribonucleotides (UU); or, in order to increase the affinity of the siRNA antisense strand with the target mRNA, the nucleotide sequence V is complementary to the nucleotide at the corresponding position of the target mRNA. Therefore, in some embodiments, the ratio of the length of the sense strand and the antisense strand of the siRNA of the present disclosure is 19/21 or 21/23. At this time, the siRNA of the present disclosure has better mRNA silencing activity.
  • the nucleotide at the corresponding position of the target mRNA refers to the nucleotide or nucleotide sequence adjacent to the third nucleotide sequence of the target mRNA at the 5'end.
  • Acid sequence II is substantially reverse complementary or completely reverse complementary, or the nucleotide sequence that is substantially reverse complementary or completely reverse complementary to the nucleotide sequence composed of nucleotide sequence II and nucleotide sequence IV .
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 5
  • the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 6
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 7
  • the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 8:
  • Z 4 is the first nucleotide at the 5'end of the antisense strand
  • Z 3 is selected from A, U, G or C
  • Z 4 is a nucleotide complementary to Z 3 .
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 65
  • the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 66
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 67
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 68:
  • Z 8 is the first nucleotide at the 5'end of the antisense strand
  • Z 7 is selected from A, U, G or C
  • Z 8 is a nucleotide complementary to Z 7 .
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 125
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 126.
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 127
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 128:
  • Z 12 is the first nucleotide at the 5'end of the antisense strand
  • Z 11 is selected from A, U, G, or C
  • Z 12 is a nucleotide complementary to Z 11 .
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 185
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 186.
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 187
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 188:
  • Z 16 is the first nucleotide at the 5'end of the antisense strand
  • Z 15 is selected from A, U, G, or C
  • Z 16 is a nucleotide complementary to Z 15 .
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 245, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 246.
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 247
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 248:
  • Z 20 is the first nucleotide at the 5'end of the antisense strand
  • Z 19 is selected from A, U, G or C
  • Z 20 is a nucleotide complementary to Z 19 .
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 305
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 306.
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 307
  • the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 308:
  • Z 24 is the first nucleotide at the 5'end of the antisense strand
  • Z 23 is selected from A, U, G or C
  • Z 24 is a nucleotide complementary to Z 23 .
  • the siRNA described in the present disclosure is siPCSKa1, siPCSKa2, siPCSKb1, siPCSKb2, siPCSKc1, siPCSKc2, siPCSKd1, siPCSKd2, siPCSKe1, siPCSKe2, siPCSKf1, or siPCSKf2 listed in Tables 1a-1f.
  • the nucleotides in the siRNA of the present disclosure are each independently a modified or unmodified nucleotide.
  • the nucleotides in the siRNA of the present disclosure are unmodified nucleotides; in some embodiments, some or all of the nucleotides in the siRNA of the present disclosure are modified nucleotides.
  • the siRNA of the present disclosure contains at least one modified nucleotide.
  • modified nucleotides refers to nucleotides or nucleotide analogs formed by replacing the 2'hydroxyl group of the ribose group of nucleotides with other groups, or having Nucleotides of modified bases.
  • the modified nucleotides will not cause the siRNA to significantly weaken or lose the function of inhibiting gene expression.
  • At least one nucleotide in the sense strand or the antisense strand of the siRNA provided in the present disclosure is a modified nucleotide, and/or at least one phosphate group is a phosphate with a modified group
  • at least a part of the phosphate group and/or ribose group in the phosphate-sugar backbone of at least one single chain in the sense strand and the antisense strand is a phosphate group with a modification group and/ Or a ribose group with a modified group.
  • all nucleotides in the sense strand and/or the antisense strand are modified nucleotides.
  • each nucleotide in the sense strand and the antisense strand of the siRNA provided in the present disclosure is independently a fluorinated modified nucleotide or a non-fluorinated modified nucleotide.
  • the inventors of the present disclosure surprisingly found that the siRNA described in the present disclosure achieved a high balance of plasma stability and gene silencing efficiency in animal experiments.
  • the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and, in the direction from the 5'end to the 3'end, the nucleotide sequence I At least the 7th, 8th and 9th nucleotides are fluorinated modified nucleotides; according to the direction from the 5'end to the 3'end, at least the 2, 6, 14, 16th positions in the nucleotide sequence II The nucleotides are fluoro-modified nucleotides.
  • the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and there are no more than 5 fluoro-modified nucleotides in the nucleotide sequence I,
  • the nucleotides at positions 7, 8, and 9 of the nucleotide sequence I are fluorinated modified nucleotides;
  • the fluorine in the nucleotide sequence II There are no more than 7 modified nucleotides, and the nucleotides at positions 2, 6, 14, and 16 of the nucleotide sequence II are fluorinated modified nucleotides.
  • the nucleus at positions 7, 8, 9 or 5, 7, 8, and 9 of the nucleotide sequence I Glycolic acid is a fluorinated modified nucleotide, and the nucleotides in the remaining positions in the sense strand are non-fluorinated modified nucleotides; in the direction from the 5'end to the 3'end, in the antisense strand
  • the nucleotides at positions 2, 6, 14, 16 or 2, 6, 8, 9, 14, and 16 of the nucleotide sequence II are fluorinated modified nucleotides, and the antisense strand
  • the nucleotides at the remaining positions are non-fluorinated modified nucleotides.
  • fluoromodified nucleotides refer to nucleotides in which the hydroxyl group at the 2'position of the ribose group of the nucleotide is substituted with fluorine, and has a structure represented by the following formula (7).
  • Non-fluorinated modified nucleotides refer to nucleotides or nucleotide analogs formed by replacing the hydroxyl group at the 2'position of the ribose group of the nucleotide with a non-fluorine group.
  • each non-fluorinated modified nucleotide is independently selected from among nucleotides or nucleotide analogs formed by the substitution of a non-fluorinated group for the hydroxyl group at the 2'position of the ribose group of the nucleotide.
  • nucleotides or nucleotide analogs formed by the substitution of a non-fluorinated group for the hydroxyl group at the 2'position of the ribose group of the nucleotide.
  • nucleotides formed by replacing the hydroxyl group at the 2'position of these ribose groups with non-fluorine groups are well known to those skilled in the art, and these nucleotides can be selected from 2'-alkoxy modified nucleotides, 2'- Substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-amino modified nucleotides, 2'- One of substituted amino-modified nucleotides and 2'-deoxynucleotides.
  • the 2'-alkoxy modified nucleotides are 2'-methoxy (2'-OMe) modified nucleotides, as shown in formula (8).
  • the 2'-substituted alkoxy-modified nucleotides can be, for example, 2'-O-methoxyethyl (2'-MOE) modified nucleotides, such as formula (9 ) Shown.
  • the 2'-amino (2'-NH 2 ) modified nucleotide is represented by formula (10).
  • the 2'-deoxynucleotide (DNA) is represented by formula (11):
  • Nucleotide analogs refer to nucleotides that can replace nucleotides in nucleic acids, but the structure is different from adenine ribonucleotides, guanine ribonucleotides, cytosine ribonucleotides, uracil ribonucleotides or thymine deoxynucleotides The group of ribonucleotides.
  • the nucleotide analogs can be isonucleotides, bridged nucleotides, or acyclic nucleotides.
  • BNA Bridged Nucleic Acid
  • BNA Bridged Nucleic Acid
  • BNA can contain a five-membered ring, a six-membered ring, or a seven-membered ring with a "fixed" C3'-endosugar condensed bridge structure. The bridge is usually incorporated into the 2'-, 4'-position of the ribose to provide a 2',4'-BNA nucleotide.
  • BNA may be LNA, ENA, cET BNA, etc., where LNA is shown in formula (12), ENA is shown in formula (13), and cET BNA is shown in formula (14):
  • Acyclic nucleotides are a type of nucleotides formed by opening the sugar ring of nucleotides.
  • acyclic nucleotides can be unlocked nucleic acids (UNA) or glycerol nucleic acids (GNA), wherein UNA is represented by formula (15) and GNA is represented by formula (16):
  • R is selected from H, OH or alkoxy (O-alkyl).
  • Isonucleotide refers to a compound formed by changing the position of the base in the nucleotide on the ribose ring.
  • the heteronucleotide may be a compound formed by moving a base from the 1'-position of the ribose ring to the 2'-position or the 3'-position, as shown in formula (17) or (18).
  • Base represents a base, such as A, U, G, C or T; R is selected from H, OH, F or the non-fluorine group as described above.
  • the nucleotide analog is selected from one of heteronucleotides, LNA, ENA, cET, UNA, and GNA.
  • each non-fluorinated modified nucleotide is a methoxy-modified nucleotide.
  • the methoxy-modified nucleotide refers to the 2'of the ribose group. -Nucleotides formed by the substitution of a hydroxy group with a methoxy group.
  • the siRNA of the present disclosure is an siRNA with the following modifications: in the direction from the 5'end to the 3'end, in the sense strand, positions 7, 8, and 9 of the nucleotide sequence I Or the nucleotides at positions 5, 7, 8, and 9 are fluoro-modified nucleotides, and the nucleotides at the remaining positions in the sense strand are methoxy-modified nucleotides; in the antisense strand Wherein, the nucleotides at positions 2, 6, 14, 16 or 2, 6, 8, 9, 14, and 16 of the nucleotide sequence II are fluoro-modified nucleotides, and the antisense The nucleotides at the remaining positions in the chain are methoxy modified nucleotides.
  • the siRNA of the present disclosure is an siRNA with the following modifications: in the direction from the 5'end to the 3'end, the siRNA is at positions 5, 7, 8 and 9 of nucleotide sequence I in the sense strand
  • the nucleotides are fluoro-modified nucleotides
  • the nucleotides in the remaining positions of the sense strand of the siRNA are methoxy-modified nucleotides
  • the siRNA in the direction from the 5'end to the 3'end
  • the nucleotides at positions 2, 6, 8, 9, 14 and 16 of nucleotide sequence II in the antisense strand are fluorinated modified nucleotides
  • the nucleotides at the remaining positions of the antisense strand of siRNA are methoxy groups Modified nucleotides;
  • the 5th, 7th, 8th and 9th nucleotides of the nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense The nucleotides at the remaining positions of the chain are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, and 14th nucleotide sequence II in the antisense strand of the siRNA And the nucleotides at position 16 are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of siRNA are methoxy-modified nucleotides;
  • the nucleotides at positions 7, 8 and 9 of nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense strand of the siRNA
  • the nucleotides at the remaining positions are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, 14th, and 16th nucleotide sequence II in the antisense strand of the siRNA
  • the nucleotides at the position are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of the siRNA are methoxy-modified nucleotides.
  • the siRNA provided in the present disclosure is siPCSKa1-M1, siPCSKa1-M2, siPCSKa1-M3, siPCSKa2-M1, siPCSKa2-M2, siPCSKa2-M3, siPCSKb1-M1, siPCSKb1- M2, siPCSKb1-M3, siPCSKb2-M1, siPCSKb2-M2, siPCSKb2-M3, siPCSKc1-M1, siPCSKc1-M2, siPCSKc1-M3, siPCSKc2-M1, siPCSKc2-M2, siPCSKc2-M3, siPCSKd1-M1, siPCSKd1-M2 siPCSKd1-M3, siPCSKd2-M1, siPCSKd2-M2, siPCSKd2-M3, siPCSKe1-M1, siPCSKe1-M2, siPCSKe1-M3, siPCSKe2-M1, siPCSKe2-M2, siPCSKe2-M3, siPCSKe1-M1, siPCSKe1-M2, siPCSKe
  • the modified siRNA is not only low in cost, but also makes the ribonuclease in the blood difficult to cut the nucleic acid, thereby increasing the stability of the nucleic acid and making the nucleic acid more resistant to nuclease hydrolysis.
  • the above-mentioned modified siRNA also has a higher activity of inhibiting target mRNA.
  • the phosphate groups in the phosphate-sugar backbone of at least one single strand in the sense strand and the antisense strand of the siRNA provided in the present disclosure is a phosphate group with a modification group.
  • the phosphate ester group with a modification group is a phosphorothioate group formed by replacing at least one oxygen atom in the phosphodiester bond in the phosphate ester group with a sulfur atom; in some embodiments, the The phosphate group with a modified group is a phosphorothioate group with a structure shown in formula (1):
  • This modification can stabilize the double-stranded structure of the siRNA and maintain the high specificity and affinity of base pairing.
  • the phosphorothioate group linkage exists in at least one of the following positions: the first and second cores of either end of the sense strand or the antisense strand Between nucleotides; between the second and third nucleotides at either end of the sense strand or the antisense strand; or any combination of the above.
  • the phosphorothioate group linkages are present at all the above positions except the 5'end of the sense chain.
  • the phosphorothioate group linkages are present at all the above positions except the 3'end of the sense chain.
  • the phosphorothioate group linkage is present in at least one of the following positions:
  • the siRNA provided in the present disclosure is siPCSKa1-M1S, siPCSKa1-M2S, siPCSKa1-M3S, siPCSKa2-M1S, siPCSKa2-M2S, siPCSKa2-M3S, siPCSKb1-M1S, siPCSKb1- listed in Tables 1a-1f.
  • the 5'terminal nucleotide of the siRNA antisense strand is a 5'-phosphate nucleotide or a 5'-phosphate analog modified nucleotide.
  • 5'-phosphate nucleotides or 5'-phosphate analog modified nucleotides are well known to those skilled in the art, for example, 5'-phosphate nucleotides may have the following structure:
  • R is selected from H, OH, methoxy, fluorine;
  • Base represents a base, selected from A, U, C, G or T.
  • the 5'-phosphate nucleotides are 5'-phosphate-containing nucleotides represented by formula (2), and the 5'-phosphate analog modified nucleotides are those containing vinyl phosphate (5 '-(E)-vinylphosphonate, E-VP) modified nucleotides, as shown in formula (3), or phosphorothioate modified nucleotides, as shown in formula (5).
  • the siRNA provided in the present disclosure is siPCSKa1-M1P1, siPCSKa1-M2P1, siPCSKa1-M3P1, siPCSKa2-M1P1, siPCSKa2-M2P1, siPCSKa2-M3P1, siPCSKb1-M1P1, siPCSKb1- M2P1, siPCSKb1-M3P1, siPCSKb2-M1P1, siPCSKb2-M2P1, siPCSKb2-M3P1, siPCSKc1-M1P1, siPCSKc1-M2P1, siPCSKc1-M3P1, siPCSKc2-M1P1, siPCSKc2-M1P1, siPCSKc2-M2P1, siPCSKc2-M1P1, siPCSKc2-M2P1, siPCSKc2-d1-M2P1, siPCSKc2-d1-M2P1, siPCSKc2-d1-M2P1, siPCSKc2-d1-M2P1, siPCSKc2-d1-
  • the siRNA may be a seventh siRNA.
  • the seventh siRNA contains a sense strand and an antisense strand, each nucleotide in the seventh siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 399 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 400 The length is equal, and no more than 3 nucleotide differences:
  • Z 25 is U
  • Z 26 is A
  • the nucleotide sequence I contains the nucleotide Z 27 whose position corresponds to Z 25
  • the nucleotide sequence II contains the nucleoside whose position corresponds to Z 26 Acid Z 28
  • the Z 28 is the first nucleotide at the 5'end of the antisense strand.
  • the sense strand only includes nucleotide sequence I
  • the antisense strand only includes nucleotide sequence II.
  • nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399, and/or the nucleotide sequence II and SEQ ID NO: No more than 1 nucleotide difference between the nucleotide sequences shown in 400.
  • the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 400 includes the difference at position Z 28 , and Z 28 is selected from G, U or C. In some embodiments, the nucleotide difference as a difference at a position of Z 28, Z 28 is selected from G, U or C. In some embodiments, Z 27 is a nucleotide that is complementary to Z 28 .
  • the nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399 includes the ninth nucleus from the 5'end of the nucleotide sequence I The difference of glycidyl acid Z, and Z is dT.
  • the nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399 includes the difference at position Z 27 , and Z 27 is selected from A, G or C.
  • nucleotide sequence I there are 2 nucleotide differences between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399, and the nucleotide sequence I and the nucleotide sequence Sequence II is fully reverse complementary, wherein the two nucleotide differences are the difference at positions Z and Z 27 , and Z is dT, and Z 27 is selected from A, G, or C.
  • siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
  • nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 401
  • nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 402:
  • dT is a thymine deoxynucleotide
  • the Z 28 is the first nucleotide at the 5'end of the antisense strand
  • Z 27 is selected from A, U, G or C
  • Z 28 is complementary to Z 27
  • Z 27 is U and Z 28 is A.
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 403, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 404.
  • the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 405
  • the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 406:
  • the siRNA described in the present disclosure is siPCSKg3 or siPCSKg4 listed in Table 1g.
  • the nucleotides are modified nucleotides, and the modified nucleotides are fluoro-modified nucleosides.
  • the fluorinated modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and, in the direction from the 5'end to the 3'end, the nuclear At least the nucleotides at positions 2, 6, 14, and 16 in the nucleotide sequence II are fluorinated modified nucleotides.
  • the siRNA provided in the present disclosure is siPCSKg3-M4, siPCSKg4-M5, siPCSKg3-M4S, siPCSKg4-M5S, siPCSKg3-M4P1, siPCSKg4-M5P1, siPCSKg3-M4SP1, or siPCSKg4-M5SP1 listed in Table 1g. Any kind of.
  • the inventors of the present disclosure unexpectedly discovered that the siRNA provided by the present disclosure not only has significantly enhanced plasma and lysosome stability, but also has higher target mRNA inhibitory activity.
  • the siRNA provided in the present disclosure can be obtained by conventional siRNA preparation methods in the art (for example, solid-phase synthesis and liquid-phase synthesis). Among them, solid phase synthesis already has commercial customized services.
  • the modified nucleotide groups can be introduced into the siRNA described in the present disclosure by using nucleoside monomers with corresponding modifications, the method for preparing nucleoside monomers with corresponding modifications and the introduction of modified nucleotide groups The siRNA method is also well known to those skilled in the art.
  • the present disclosure provides a pharmaceutical composition containing the siRNA as described above as an active ingredient and a pharmaceutically acceptable carrier.
  • the pharmaceutically acceptable carrier may be a carrier conventionally used in the field of siRNA administration, such as but not limited to magnetic nanoparticles (magnetic nanoparticles, such as nanoparticles based on Fe 3 O 4 or Fe 2 O 3 ), carbon nanotubes ( carbon nanotubes), mesoporous silicon, calcium phosphate nanoparticles (calcium phosphate nanoparticles), polyethylenimine (PEI), polyamidoamine (PAMAM) dendrimer, polylysine Acid (poly(L-lysine), PLL), chitosan (chitosan), 1,2-dioleoyl-3-trimethylammonium-propane (1,2-dioleoyl-3-trimethylammonium-propane, DOTAP), poly D Type or L type lactic acid/glycolic acid copolymer (poly(D&L-lactic/glycolic acid) copolymer, PLGA), poly(2-aminoethyl ethylene
  • the content of siRNA and pharmaceutically acceptable carrier there is no special requirement for the content of siRNA and pharmaceutically acceptable carrier, and may be the conventional content of each component.
  • the weight ratio of siRNA to the pharmaceutically acceptable carrier may be 1:(1-500), and in some embodiments, the weight ratio may be 1:(1-50).
  • the pharmaceutical composition may also contain other pharmaceutically acceptable auxiliary materials, which may be one or more of various formulations or compounds conventionally used in the art.
  • the pharmaceutically acceptable other auxiliary materials may include at least one of a pH buffer, a protective agent, and an osmotic pressure regulator.
  • the pH buffer can be a tris hydrochloride buffer with a pH of 7.5-8.5 and/or a phosphate buffer with a pH of 5.5-8.5, for example, it can be a phosphate with a pH of 5.5-8.5 Buffer.
  • the protective agent may be at least one of inositol, sorbitol, sucrose, trehalose, mannose, maltose, lactose, and glucose. Based on the total weight of the pharmaceutical composition, the content of the protective agent may be 0.01-30% by weight.
  • the osmotic pressure regulator may be sodium chloride and/or potassium chloride.
  • the content of the osmotic pressure regulator is such that the osmotic pressure of the pharmaceutical composition is 200-700 millosmole per kilogram (mOsm/kg). According to the required osmotic pressure, those skilled in the art can easily determine the content of the osmotic pressure regulator.
  • the pharmaceutical composition may be a liquid preparation, such as an injection, or a lyophilized powder injection, which is mixed with liquid excipients during administration to prepare a liquid preparation.
  • the liquid formulation can be, but not limited to, administered by subcutaneous, intramuscular or intravenous injection, and can also be, but not limited to, administered to the lungs by spraying, or administered to other organs and tissues (such as liver) by spraying through the lungs.
  • the pharmaceutical composition is for intravenous administration.
  • the pharmaceutical composition may be in the form of a liposome formulation.
  • the pharmaceutically acceptable carrier used in the liposome formulation contains an amine-containing transfection compound (hereinafter may also be referred to as an organic amine), auxiliary lipids and/or PEGylation Lipid.
  • the organic amine, auxiliary lipid and pegylated lipid may be selected from the amine-containing transfection compound described in CN103380113A (incorporated in its entirety by reference) or its pharmaceutically acceptable One or more of the accepted salt or derivative, auxiliary lipid, and pegylated lipid.
  • the organic amine may be a compound represented by formula (201) described in CN103380113A or a pharmaceutically acceptable salt thereof:
  • Each X 101 or X 102 is independently O, S, NA or CA, where A is hydrogen or a C1-C20 hydrocarbon chain;
  • Each R 101 , R 102 , R 103 , R 104 , R 105 , R 106 or R 107 is independently hydrogen, cyclic or acyclic, substituted or unsubstituted, branched or straight chain lipid Group group, cyclic or acyclic, substituted or unsubstituted, branched or straight chain heteroaliphatic group, substituted or unsubstituted, branched or straight chain acyl group, substituted Or unsubstituted, branched or straight chain aryl, substituted or unsubstituted, branched or straight chain heteroaryl;
  • x is an integer of 1-10;
  • R 103 and the nitrogen in formula (201) form a structure as shown in formula (202) or formula (203):
  • g, e, or f are each independently an integer from 1 to 6
  • HCC represents a hydrocarbon chain
  • each *N represents a nitrogen atom in formula (201).
  • R 103 is a polyamine. In other embodiments, R 103 is a ketal. In some embodiments, each of R 101 and R 102 in formula (201) is independently any substituted or unsubstituted, branched or straight chain alkyl or alkenyl group.
  • the radical or alkenyl group has 3 to about 20 carbon atoms, such as 8 to about 18 carbon atoms, and 0 to 4 double bonds, such as 0 to 2 double bonds.
  • R 103 can be any of the following formulas (204)-(213):
  • each "HCC” represents a hydrocarbon chain
  • each * shows R 103 and the formula (201)
  • the possible connection points of the nitrogen atom in where each H at any * position can be replaced to achieve the connection with the nitrogen atom in formula (201).
  • the compound represented by formula (201) can be prepared according to the description in CN103380113A.
  • the organic amine is an organic amine represented by formula (214) and/or an organic amine represented by formula (215):
  • the auxiliary lipid is cholesterol, cholesterol analogues and/or cholesterol derivatives
  • the pegylated lipid is 1,2-dipalmitamide-sn-glycerol-3-phosphatidylethanolamine-N-[methoxy(polyethylene glycol)]-2000.
  • the molar ratio between the organic amine, the auxiliary lipid and the pegylated lipid is (19.7-80): (19.7-80 ): (0.3-50), for example (50-70): (20-40): (3-20).
  • the particles of the pharmaceutical composition formed by the siRNA of the present disclosure and the above-mentioned amine-containing transfection reagent have an average diameter of about 30 nm to about 200 nm, usually about 40 nm to about 135 nm, and more generally, the liposome
  • the average diameter of the particles is about 50 nm to about 120 nm, about 50 nm to about 100 nm, about 60 nm to about 90 nm, or about 70 nm to about 90 nm, for example, the average diameter of the liposome particles is about 30, 40, 50, 60, 70 , 75, 80, 85, 90, 100, 110, 120, 130, 140, 150 or 160nm.
  • the weight of the siRNA and all lipids is from about 1:1 to about 1:50, from about 1:1 to about 1:30, from about 1:3 to about 1:20, from about 1:4 to about 1: 18.
  • the weight ratio of the siRNA of the present disclosure to all lipids is about 1:5, 1:6, 1:7, 1:8, 1:9, 1:10, 1 :11, 1:12, 1:13, 1:14, 1:15, 1:16, 1:17, or 1:18.
  • each component of the pharmaceutical composition may exist independently when sold, and may exist in the form of a liquid formulation when used.
  • the pharmaceutical composition formed by the siRNA provided in the present disclosure and the above-mentioned pharmaceutically acceptable carrier can be prepared according to various known methods, except that the siRNA provided in the present disclosure can replace the existing siRNA; in some In the embodiment, it can be prepared as follows:
  • the organic amine, auxiliary lipid and PEGylated lipid are suspended in alcohol according to the above molar ratio and mixed to obtain a lipid solution; the amount of alcohol is such that the total mass concentration of the resulting lipid solution is 2-25 mg/mL, For example, it can be 8-18 mg/mL.
  • the alcohol is selected from pharmaceutically acceptable alcohols, such as alcohols that are liquid near room temperature, for example, ethanol, propylene glycol, benzyl alcohol, glycerin, polyethylene glycol 200, polyethylene glycol 300, and polyethylene glycol 400 One or more of, for example, ethanol.
  • the siRNA provided in the present disclosure is dissolved in a buffered salt solution to obtain an aqueous siRNA solution.
  • concentration of the buffer salt solution is 0.05-0.5M, such as 0.1-0.2M, adjust the pH of the buffer salt solution to 4.0-5.5, such as 5.0-5.2, and the amount of the buffer salt solution is such that the concentration of siRNA does not exceed 0.6 mg /mL, for example, 0.2-0.4 mg/mL.
  • the buffer salt is selected from one or more of soluble acetate and soluble citrate, for example, sodium acetate and/or potassium acetate.
  • the lipid solution and the siRNA aqueous solution are mixed, and the mixed product is incubated at 40-60°C for at least 2 minutes, for example, for 5-30 minutes, to obtain an incubated liposome preparation.
  • the volume ratio of lipid solution and siRNA aqueous solution is 1: (2-5).
  • the incubated liposome preparation is concentrated or diluted to remove impurities and sterilize to obtain the pharmaceutical composition provided by the present disclosure.
  • Its physical and chemical parameters are pH 6.5-8, encapsulation rate not less than 80%, and particle size 40-200nm, polydispersity index is not higher than 0.30, osmotic pressure is 250-400mOsm/kg; for example, the physical and chemical parameters can be pH 7.2-7.6, encapsulation rate is not less than 90%, particle size is 60-100nm, more The dispersion index is not higher than 0.20, and the osmotic pressure is 300-400mOsm/kg.
  • concentration or dilution can be performed before, after or at the same time as removing impurities.
  • Various existing methods can be used to remove impurities, such as a tangential flow system, a hollow fiber column, ultrafiltration under 100K Da conditions, and the ultrafiltration exchange solution is phosphate buffered saline (PBS) with pH 7.4.
  • PBS phosphate buffered saline
  • the method of sterilization can adopt various existing methods, for example, it can be filtered and sterilized on a 0.22 ⁇ m filter.
  • the present disclosure provides an siRNA conjugate containing the above-mentioned siRNA and a conjugating group conjugated to the siRNA.
  • the conjugating group includes at least one pharmaceutically acceptable targeting group and an optional linker, and the siRNA, the linker and the targeting group are connected in sequence.
  • the targeting groups are 1-6.
  • the siRNA molecule can be non-covalently or covalently conjugated to the conjugating group, for example can be covalently conjugated to the conjugating group.
  • the conjugation site of the siRNA and the conjugating group can be at the 3'end or 5'end of the siRNA sense strand, or at the 5'end of the antisense strand, or in the internal sequence of the siRNA. In some embodiments, the conjugation site of the siRNA and the conjugating group is at the 3'end of the sense strand of the siRNA.
  • the conjugating group may be attached to the phosphate group, the 2'-position hydroxyl group or the base of the nucleotide. In some embodiments, the conjugating group can also be connected to the 3'-position hydroxyl group, in which case the nucleotides are connected by 2'-5' phosphodiester bond.
  • the conjugating group is usually attached to the phosphate group of the nucleotide; when the conjugating group is attached to the internal sequence of the siRNA, the conjugating group is Usually attached to the ribose ring or base.
  • connection methods can refer to the literature: Muthiah Manoharan et al. siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silence in vivo in hepatocytes. ACS Chemical biology, 2015, 10(5)
  • the siRNA and the conjugating group may be connected by acid-labile or reducible chemical bonds. Under the acidic environment of cell endosomes, these chemical bonds can be degraded, so that the siRNA becomes a free state.
  • the conjugating group can be attached to the sense strand of the siRNA to minimize the effect of conjugation on the activity of the siRNA.
  • the pharmaceutically acceptable targeting group may be a ligand commonly used in the field of siRNA administration, such as various ligands described in WO2009082607A2, the entire disclosure of which is incorporated by reference This article.
  • the pharmaceutically acceptable targeting group may be selected from one or more of the following targeting molecules or ligands formed by their derivatives: lipophilic molecules, such as cholesterol, bile acids, Vitamins (such as vitamin E), lipid molecules of different chain lengths; polymers, such as polyethylene glycol; polypeptides, such as membrane-permeable peptides; aptamers; antibodies; quantum dots; sugars, such as lactose, polylactose, and mannose Sugar, galactose, N-acetylgalactosamine (GalNAc); folic acid (folate); receptor ligands expressed by hepatic parenchymal cells, such as asialoglycoprotein, asialosugar residues, lipoproteins (such as high density Lipoprotein, low-density lipoprotein, etc.), glucagon, neurotransmitter (such as adrenaline), growth factor, transferrin, etc.
  • lipophilic molecules such as cholesterol, bile acids, Vitamins (such as vitamin
  • each of the ligands is independently selected from a ligand capable of binding to cell surface receptors.
  • at least one ligand is a ligand capable of binding to receptors on the surface of liver cells.
  • at least one ligand is a ligand capable of binding to a mammalian cell surface receptor.
  • at least one ligand is a ligand capable of binding to human liver cell surface receptors.
  • at least one ligand is a ligand capable of binding to the liver surface asialoglycoprotein receptor (ASGPR).
  • the types of these ligands are well-known to those skilled in the art, and their role is generally to bind to specific receptors on the surface of target cells and mediate the delivery of siRNA linked to the ligand to target cells.
  • the pharmaceutically acceptable targeting group may be any ligand that binds to the asialoglycoprotein receptor (ASGPR) on the surface of mammalian liver cells.
  • each ligand is independently an asialoglycoprotein, such as asialoorosomucoid (ASOR) or asialofetuin (ASF).
  • the ligand is a sugar or a sugar derivative.
  • At least one ligand is a sugar. In some embodiments, each ligand is a sugar. In some embodiments, at least one ligand is a monosaccharide, polysaccharide, modified monosaccharide, modified polysaccharide, or sugar derivative. In some embodiments, at least one of the ligands may be a monosaccharide, disaccharide, or trisaccharide. In some embodiments, at least one ligand is a modified sugar. In some embodiments, each ligand is a modified sugar.
  • each ligand is independently selected from polysaccharides, modified polysaccharides, monosaccharides, modified monosaccharides, polysaccharide derivatives, or monosaccharide derivatives.
  • each or at least one ligand is selected from the group consisting of the following sugars: glucose and its derivatives, mannan and its derivatives, galactose and its derivatives, xylose and its derivatives Food, ribose and its derivatives, fucose and its derivatives, lactose and its derivatives, maltose and its derivatives, arabinose and its derivatives, fructose and its derivatives, and sialic acid.
  • each of the ligands may be independently selected from D-mannanose, L-mannanose, D-arabinose, D-xylofuranose, L-xylofuranose, D- Glucose, L-glucose, D-galactose, L-galactose, ⁇ -D-mannanose, ⁇ -D-mannanose, ⁇ -D-mannanose, ⁇ -D-mannanose, ⁇ -D-glucopyranose, ⁇ -D-glucopyranose, ⁇ -D-glucopyranose, ⁇ -D-glucopyranose, ⁇ -D-frutofuranose, ⁇ -D-fructose pyranose, ⁇ -D-pyrano Galactopyrose, ⁇ -D-galactopyranose, ⁇ -D-galactofuranose, ⁇ -D-galactofuranose, glucosamine, sialic acid, galactosamine,
  • the pharmaceutically acceptable targeting group in the siRNA conjugate may be galactose or N-acetylgalactosamine, wherein the galactose or N-acetylgalactosamine molecule may be monovalent , Second price, three price, four price. It should be understood that the monovalent, bivalent, trivalent, and tetravalent mentioned herein refer to the siRNA molecule and the conjugation group containing galactose or N-acetylgalactosamine as the targeting group to form siRNA conjugates.
  • the molar ratio of the siRNA molecule to the galactose or N-acetylgalactosamine molecule in the siRNA conjugate is 1:1, 1:2, 1:3 or 1:4.
  • the pharmaceutically acceptable targeting group is N-acetylgalactosamine.
  • the siRNA described in the present disclosure is conjugated with a N-acetylgalactosamine-containing conjugating group, the N-acetylgalactosamine molecule is trivalent or tetravalent.
  • the siRNA described in the present disclosure is conjugated with a N-acetylgalactosamine-containing conjugating group, the N-acetylgalactosamine molecule is trivalent.
  • the targeting group can be connected to the siRNA molecule via a suitable linker, and those skilled in the art can select a suitable linker according to the specific type of the targeting group.
  • linkers, targeting groups, and connection methods with siRNA please refer to the disclosure of WO2015006740A2, and the entire content is incorporated herein by reference.
  • a suitable linker may have a structure as shown in formula (301):
  • k is an integer of 1-3;
  • L A having the formula (302) contains an amide bond-like portion of the structure shown, each of the L A at its two ends respectively of said group and the targeting moieties via ether linkages L C phase connection:
  • L B having the formula (303) comprises a pyrrolidine N- acyl chain portion shown structure, the linear portion having a carbonyl group at one end thereof and connected with the L C moiety through an amide bond, at the other end It has an oxygen group and is connected to the siRNA through a phosphate bond:
  • L C based aminomethane two monovalent 2-4 aminomethane or tris (hydroxymethyl) aminomethane linking group, via an oxygen atom of the L C L A portion of each of the phases by ether linkages connection, and connected by an amide bond via a nitrogen atom and L B of the portion.
  • the double helix structure represents siRNA.
  • the conjugation site of the siRNA and the conjugating group can be at the 3'end or 5'end of the siRNA sense strand, or at the 5'end of the antisense strand, or in the internal sequence of the siRNA.
  • the double helix structure represents the siRNA, and the linker is connected to the 3'end of the sense strand of the siRNA.
  • a suitable linker may have a structure as shown in formula (306):
  • l is an integer from 0-3;
  • # Indicates the site on the linker that is connected to the siRNA via a phosphate bond.
  • the siRNA conjugate has a structure as shown in formula (307):
  • the double helix structure represents the siRNA, and the linker is connected to the 3'end of the sense strand of the siRNA.
  • WO2015006740A2 describes in detail the preparation methods of various conjugates.
  • the siRNA conjugate of the present disclosure is obtained by a method well known to those skilled in the art.
  • WO2014025805A1 describes the preparation method of the structure represented by formula (305), Rajeev et al. described the preparation method of the structure represented by formula (307) in ChemBioChem2015, 16, 903-908.
  • the siRNA conjugate has a structure as shown in formula (308):
  • n1 is an integer selected from 1-3, n3 is an integer selected from 0-4;
  • Each m1, m2 or m3 is independently an integer selected from 2-10;
  • R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently H, or are selected from the group consisting of C 1 -C 10 alkyl, C 1 -C 10 haloalkane Group and C 1 -C 10 alkoxy;
  • R 3 is a group represented by the formula A59:
  • E 1 is OH, SH or BH 2
  • Nu is the siRNA of the disclosure
  • L 1 may be selected from the group consisting of A1-A26 groups or any combination thereof, wherein the structure and definition of A1-A26 are as follows:
  • Each R' is independently C 1 -C 10 alkyl
  • Each Ra is independently selected from the group consisting of groups represented by formulas (A27)-(A45) or any combination thereof:
  • Each Rb is independently C 1 -C 10 alkyl; Represents the point at which the group is covalently attached.
  • L 1 is defined as a linear alkylene group for convenience, it may not be a linear group or have a different name, such as an amine or alkenyl group due to the above substitutions and/or substitutions.
  • the length of L 1 is the number of atoms in the chain connecting the two connection points.
  • a ring (such as a heterocyclylene or heteroarylene group) obtained by replacing the carbon atom of the linear alkylene group is counted as one atom.
  • each M 1 represents a targeting group, and its definition and selectable range are the same as the above-mentioned targeting group.
  • each M 1 is independently selected from one of the ligands having affinity for the asialoglycoprotein receptor on the surface of mammalian liver cells.
  • n1 may be an integer of 1-3
  • n3 may be an integer of 0-4
  • M 1 targeting groups in the conjugate is at least 2; in some embodiments, n1+n3 ⁇ 2, so that the number of M 1 targeting groups is at least 3, thereby This makes it easier for the M 1 targeting group to bind to the asialoglycoprotein receptor on the liver surface, thereby promoting the conjugate to enter the cell through endocytosis.
  • n1 is an integer of 1-2
  • n3 is an integer of 0-1
  • n1+n3 2-3.
  • each of m1, m2, or m3 are each independently an integer selected from 2 to 10, M 1 may be a plurality of spaces between the position for the targeting group M 1 and the surface of liver targeting group
  • M 1 may be a plurality of spaces between the position for the targeting group M 1 and the surface of liver targeting group
  • each m1, m2, or m3 is independently An integer of 2-5.
  • R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently selected from H, C 1 -C 10 alkyl, C 1 -C 10 haloalkyl, and C One of the 1- C 10 alkoxy groups will not change the properties of the siRNA conjugate of the present disclosure, and can achieve the purpose of the present disclosure.
  • R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently selected from H, methyl, or ethyl.
  • R 10 , R 11 , R 12 , R 13 , R 14 and R 15 are all H.
  • R 3 is a group represented by the formula A59, wherein E 1 is OH, SH or BH 2. Based on the consideration of the availability of raw materials for preparation, in some embodiments, E 1 is OH or SH.
  • R 2 The choice of R 2 is to realize the connection with the N atom on the nitrogen-containing skeleton and A59.
  • nitrogen-containing skeleton refers to a chain structure in which carbon atoms to which R 10 , R 11 , R 12 , R 13 , R 14 and R 15 are connected and N atoms are connected to each other. Therefore, R 2 may be any linking group capable of linking the A59 group to the N atom on the nitrogen-containing skeleton in an appropriate manner.
  • the R 2 group in the case of preparing the siRNA conjugate represented by formula (308) by a solid-phase synthesis process, needs to also contain a connection site connected to the N atom on the nitrogen-containing backbone And the connection site to the P atom in R 3 .
  • the site connected to the N atom on the nitrogen-containing skeleton in R 2 forms an amide bond with the N atom
  • the site connected to the P atom on R 3 forms a phosphate bond with the P atom
  • R 2 can be B5, B6, B5' or B6':
  • the value range of q 2 can be an integer of 1-10. In some embodiments, q 2 is an integer of 1-5.
  • L 1 The role of L 1 is to connect the M 1 targeting group to the N on the nitrogen-containing backbone to provide the liver targeting function for the siRNA conjugate represented by formula (308).
  • L 1 is selected from one or more linked combinations of groups of formula A1-A26.
  • L 1 is selected from a connection combination of one or more of A1, A4, A5, A6, A8, A10, A11, and A13.
  • L 1 is selected from a connection combination of at least two of A1, A4, A8, A10, and A11.
  • L 1 is selected from a connection combination of at least two of A1, A8, and A10.
  • the length of L 1 can be 3-25 atoms, 3-20 atoms, 4-15 atoms, or 5-12 atoms. In some embodiments, the length of L 1 is 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60 atom.
  • j1 is an integer of 2-10, and in some embodiments, j1 is an integer of 3-5. In some embodiments, j2 is an integer from 2-10, and in some embodiments, j2 is an integer from 3-5.
  • R' is a C 1 -C 4 alkyl group, and in some embodiments, R'is one of methyl, ethyl, and isopropyl.
  • Ra is one of A27, A28, A29, A30, and A31. In some embodiments, Ra is A27 or A28.
  • Rb is a C 1 -C 5 alkyl group. In some embodiments, Rb is one of methyl, ethyl, isopropyl and butyl.
  • each of j1, j2, R', Ra, Rb is selected in formula A1-A26, so that the M 1 targeting group is connected to the N atom on the nitrogen-containing backbone, and the M 1 target
  • the spatial position between the orientation groups is more suitable for the M 1 targeting group to bind to the asialoglycoprotein receptor on the liver surface.
  • the conjugate has the formula (403), (404), (405), (406), (407), (408), (409), (410), (411), (412 ), (413), (414), (415), (416), (417), (418), (419), (420), (421) or (422):
  • the P atom in formula A59 can be attached to any possible position in the siRNA sequence.
  • the P atom in formula A59 can be attached to any nucleotide in the sense strand or antisense strand of the siRNA;
  • the P atom in formula A59 is connected to any nucleotide in the sense strand of the siRNA.
  • the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand; in some embodiments, the P atom in formula A59 is connected to the end of the siRNA sense strand. The end refers to the first 4 nucleotides from one end of the sense strand or the antisense strand.
  • the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand; in some embodiments, the P atom in formula A59 is connected to the 3'end of the siRNA sense strand.
  • the siRNA conjugate represented by formula (308) enters the cell, when unwinding, a separate siRNA antisense strand can be released to block PCSK9 mRNA translation The protein process inhibits PCSK9 gene expression.
  • P in formula A59 can be attached to any possible position on the nucleotide in the siRNA, for example, the 5'position of the nucleotide, the 2'position of the nucleotide, the 3'of the nucleotide Position or nucleotide base.
  • the P atom in formula A59 can be connected to the 2', 3'or 5'position of the nucleotide in the siRNA by forming a phosphodiester bond.
  • the P atom in formula A59 is connected to the oxygen atom formed after the 3'hydroxyl group of the 3'terminal nucleotide of the siRNA sense strand is dehydrogenated (at this time, the P atom in A59 can also be regarded as siRNA
  • the P atom in the phosphate group contained in A59), or the P atom in formula A59 is connected to the nucleotide by substituting the hydrogen in the 2'-hydroxyl group of one nucleotide in the sense strand of siRNA, or the P in formula A59
  • the atom is connected to the nucleotide by replacing the hydrogen in the 5'hydroxyl group of the 5'terminal nucleotide of the siRNA sense strand.
  • the inventors of the present disclosure unexpectedly discovered that the siRNA conjugate of the present disclosure has significantly improved plasma stability and low off-target effects, while also exhibiting higher PCSK9 mRNA silencing activity, and also has higher blood lipid suppression effect.
  • the siRNA of the present disclosure may be one of the siRNAs shown in Tables 1a-1g. The conjugates containing these siRNAs showed higher PCSK9 mRNA silencing activity.
  • each adjacent nucleotide is connected by a phosphodiester bond or a phosphorothioate bond, and the phosphodiester bond or phosphorothioate bond is not bridged
  • the oxygen atom or sulfur atom has a negative charge, it can exist in the form of a hydroxyl group or a mercapto group, and the hydrogen ion in the hydroxyl group or mercapto group can also be partially or completely replaced by a cation.
  • the cation may be any cation, such as one of metal cation, ammonium ion NH 4 + , and organic ammonium cation.
  • the cation is selected from one or more of alkali metal ions, ammonium cations formed by tertiary amines, and quaternary ammonium cations.
  • the alkali metal ion may be K + and/or Na +
  • the cation formed by the tertiary amine may be an ammonium ion formed by triethylamine and/or an ammonium ion formed by N,N-diisopropylethylamine. Therefore, the siRNA or siRNA conjugate described in the present disclosure may exist at least partially in the form of a salt.
  • the non-bridging oxygen atom or sulfur atom in the phosphodiester bond or phosphorothioate bond is at least partially combined with sodium ions, and the siRNA or siRNA conjugate described in the present disclosure is sodium salt or partial sodium salt.
  • modified nucleotide groups can be introduced into the siRNA described in the present disclosure by using nucleoside monomers with corresponding modifications.
  • the method of preparing nucleoside monomers with corresponding modifications and the method of introducing modified nucleotide groups into siRNA are also well known to those skilled in the art. All modified nucleoside monomers are commercially available or prepared by known methods.
  • the siRNA conjugate represented by formula (308) can be prepared by the following method, which includes under the conditions of phosphoramidite solid-phase synthesis, according to the nucleotides of the sense strand and antisense strand of the siRNA, respectively. Type and order, according to the direction of 3'to 5', connect the nucleoside monomers in turn.
  • the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization; isolate the sense strand of siRNA And the antisense strand, annealing, wherein the siRNA is the above-mentioned siRNA of the present disclosure;
  • the method also includes contacting the compound represented by formula (321) with a nucleoside monomer or a nucleotide sequence linked to a solid support in the presence of coupling reaction conditions and a coupling reagent, so that the formula (321) The compound shown in) is linked to the nucleotide sequence through a coupling reaction.
  • the compound represented by formula (321) is also referred to as a conjugate molecule.
  • R 4 is a group capable of binding to the siRNA represented by Nu in the compound represented by formula (308). In some embodiments, R 4 is a group capable of covalently bonding to the siRNA represented by Nu. In some embodiments, R 4 is a group capable of being conjugated to any functional group of siRNA represented by Nu through a phosphodiester bond through a reaction;
  • Each S 1 is independently a group formed by replacing all active hydroxyl groups in M 1 with YCOO- groups, wherein each Y is independently selected from methyl, trifluoromethyl, difluoromethyl, and monofluoromethyl
  • Y is independently selected from methyl, trifluoromethyl, difluoromethyl, and monofluoromethyl
  • phenyl group trichloromethyl, dichloromethyl, monochloromethyl, ethyl, n-propyl, isopropyl, phenyl, halophenyl, and alkylphenyl
  • Y is methyl.
  • n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , and M 1 are as described above.
  • R 4 is to realize the connection with the N atom on the nitrogen-containing backbone and to provide a suitable reaction site for the synthesis of the siRNA conjugate represented by formula (308).
  • R 4 includes an R 2 linking group or a protected R 2 linking group, and a functional group that can react with siRNA to form the structure shown in A59.
  • R 4 includes a first functional group that can form a phosphite with a group on the siRNA or nucleoside monomer represented by Nu and a second functional group that can react with a hydroxyl group or an amino group to form a covalent bond, or contains The solid phase carrier connected by the covalent bond.
  • the first functional group is phosphoramidite, hydroxyl or protected hydroxyl.
  • the second functional group is phosphoramidite, carboxyl or carboxylate.
  • the second functional group is a solid support connected to other parts of the molecule via a covalent bond, and the covalent bond is formed by a hydroxyl group or an amino group.
  • the solid support is connected via a phosphate bond, a carboxylate bond, or an amide bond.
  • the solid phase carrier is a resin.
  • the first functional group contains a hydroxyl group, -OR k, or a group represented by formula (C3);
  • the second functional group contains formula (C1), (C2), (C3), (C1' ) Or (C3'):
  • q 1 is an integer from 1 to 4
  • X is O or NH
  • M + is a cation
  • R k is a hydroxyl protecting group
  • SPS is a solid phase carrier
  • the first functional group contains a phosphoramidite group, as shown in formula (C3)
  • the phosphoramidite group can be combined with a hydroxyl group at any position on the nucleotide, such as the 2'hydroxyl group or
  • the 3'hydroxyl group undergoes a coupling reaction to form a phosphite, which is oxidized or vulcanized to form a phosphodiester bond or a phosphorothioate bond represented by formula A59, and the conjugation molecule is conjugated to the siRNA.
  • the compound of formula (321) can be conjugated to nucleotides without affecting the obtaining of the siRNA conjugate represented by formula (308).
  • the compound of formula (321) is reacted with the hydroxyl group on the terminal nucleotide in the nucleotide sequence, and then During the oxidation or vulcanization process, a phosphodiester linkage or phosphorothioate linkage is formed, and the compound of formula (321) is conjugated to siRNA.
  • the first functional group contains a protected hydroxyl group.
  • the second functional group includes a group that can react with a solid-phase support, and the reaction provides a conjugate molecule including the solid-phase support.
  • the second functional group contains a carboxyl group, a carboxylate or phosphoramidite, as shown in formula (C1), (C2) or (C3), when the second functional group contains a carboxyl group or a carboxylate.
  • the compound of formula (321) undergoes an esterification reaction or amidation reaction with a solid support, such as a hydroxyl group or an amino group on the resin, to form a conjugated molecule containing the solid support connected via a carboxylate bond.
  • the compound of formula (321) undergoes a coupling reaction with a general solid-phase carrier, such as a hydroxyl group on a resin, and is oxidized to form a solid-phase carrier-containing compound connected via a phosphodiester bond Conjugation molecule.
  • a general solid-phase carrier such as a hydroxyl group on a resin
  • the nucleoside monomers are sequentially connected according to the phosphoramidite solid phase synthesis method to obtain the sense strand or the antisense strand of the siRNA with the conjugation group attached.
  • the first functional group is deprotected and then coupled with the phosphoramidite group on the nucleoside monomer under coupling reaction conditions.
  • the first functional group contains a hydroxyl group or a protected hydroxyl group
  • the second functional group contains a solid-phase carrier connected via a carboxylate bond or a solid-phase carrier connected via an amide bond, or a phosphate bond
  • the connected solid phase carrier is represented by formula (C1') or (C3').
  • the carboxylate may be expressed as -COO - M + , where M + is a cation, for example, one selected from the group consisting of metal cations, ammonium cations NH 4 + , and organic ammonium cations.
  • M + is a cation, for example, one selected from the group consisting of metal cations, ammonium cations NH 4 + , and organic ammonium cations.
  • the metal ion is selected from one of alkali metal ions, such as K + or Na + .
  • the organic ammonium ion is an ammonium cation formed by a tertiary amine or a quaternary ammonium cation, such as an ammonium ion formed by triethylamine or N,N-diamine Ammonium ion formed by isopropylethylamine.
  • the carboxylate is triethylamine carboxylate or N,N-diisopropylethylamine carboxylate.
  • R 4 contains a structure represented by formula (B9), (B10), (B9'), (B10'), (B11), (B12), (B11') or (B12'):
  • q 1 is an integer of 1-4
  • q 2 is an integer of 1-10
  • X is O or NH
  • M + is a cation
  • R k is a hydroxyl protecting group
  • SPS is a solid phase carrier
  • q 1 is 1 or 2.
  • q 2 is an integer of 1-5.
  • R 4 contains a structure represented by formula (B9) or (B10).
  • R 4 contains a structure represented by formula (B11) or (B12).
  • R k is Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-bismethoxytrityl), TMTr (4 ,4',4"-trimethoxytrityl).
  • R k may be DMTr, that is, 4,4'-bismethoxytrityl ( 4,4'-dimethoxytrityl).
  • L 1 The definition of L 1 is as described above.
  • L 1 is used to connect the M 1 targeting group to the N atom on the nitrogen-containing backbone, thereby providing the liver targeting function for the siRNA conjugate represented by formula (308).
  • L 1 comprises any one of A1-A26 or a combination thereof.
  • the first functional group and the optional second functional group can be used to connect the conjugated molecule.
  • the siRNA conjugate represented by formula (308) to any possible position of the nucleotide sequence for example, the conjugate molecule is connected to the end of the nucleotide sequence, and the conjugate molecule is connected to the end of the nucleotide sequence.
  • the reaction conditions and reagents involved in the phosphoramidite nucleic acid solid-phase synthesis method known in the art are also applicable to these reactions. Exemplary reaction conditions and reagents will be described in detail later.
  • each S 1 is independently M 1 . In some embodiments, each S 1 is independently a group formed by protecting at least one active hydroxyl group in M 1 by a hydroxyl protecting group. In some embodiments, each S 1 is independently a group formed by protecting all active hydroxyl groups present in M 1 by a hydroxyl protecting group. In some embodiments, any hydroxyl protecting group known to those skilled in the art can be used to protect the active hydroxyl group in M 1 .
  • the protected hydroxyl group can be represented by the formula YCOO-, wherein each Y is independently selected from the group consisting of C 1 -C 10 alkyl and C 6 -C 10 aryl, and the C The 1- C 10 alkyl group and the C 6 -C 10 aryl group are optionally substituted with one or more substituents selected from the group consisting of halogen and C 1 -C 6 alkyl.
  • each Y is independently selected from the group consisting of: methyl, trifluoromethyl, difluoromethyl, monofluoromethyl, trichloromethyl, dichloromethyl , Monochloromethyl, ethyl, n-propyl, isopropyl, phenyl, halophenyl, and C 1 -C 6 alkyl phenyl.
  • each S 1 is independently selected from the group consisting of formula A46-A54:
  • S 1 is formula A49 or A50.
  • each Y is independently selected from methyl, trifluoromethyl, difluoromethyl, monofluoromethyl, trichloromethyl, dichloromethyl, monochloromethyl, ethyl, normal One of propyl, isopropyl, phenyl, halophenyl, and alkylphenyl; in some embodiments, Y is methyl.
  • the preparation method of the siRNA conjugate represented by formula (308) also includes the following steps: synthesizing another strand of siRNA (for example, when the above step synthesizes the siRNA sense strand to which the conjugate molecule is connected, also Including the synthesis of the antisense strand of siRNA according to the solid-phase synthesis method, and vice versa), separation of the sense strand and antisense strand, and annealing.
  • the solid-phase carrier connected to the nucleotide sequence and/or the conjugate molecule is cleaved, and the necessary protective group is removed (at this time, each S in the compound of formula (321) 1 group is converted into the corresponding M 1 targeting group) to obtain the siRNA sense strand (or antisense strand) and the corresponding antisense strand (or sense strand) connected with the conjugate molecule, and the sense strand and antisense strand are annealed A double-stranded RNA structure is formed, and the siRNA conjugate represented by formula (308) is obtained.
  • the preparation method of the siRNA conjugate represented by formula (308) includes the following steps: in the presence of coupling reaction conditions and coupling reagents, the compound represented by formula (321) is combined with the sense strand or reverse The first nucleoside monomer at the 3'end of the sense strand is contacted to connect the compound represented by formula (321) to the first nucleotide in the sequence.
  • nucleoside monomers are sequentially connected in the 3'to 5'direction to synthesize the sense strand or antisense strand of siRNA; wherein, the compound of formula (321) is contained in R 4
  • the first functional group and the second functional group the first functional group contains a protected hydroxyl group, and the second functional group has a structure as shown in formula (C1') or (C3').
  • the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or sulfurization; the sense or antisense strand of the nucleic acid with the conjugation group is obtained;
  • nucleoside monomers are sequentially connected in a 3'to 5'direction according to the type and sequence of the antisense strand or sense strand nucleotides to synthesize the antisense strand or sense strand of the nucleic acid;
  • the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization; removing the protective group and cutting with the solid phase carrier, separating and purifying to obtain the sense strand and antisense strand, and annealing.
  • the preparation method of the siRNA conjugate represented by formula (308) includes the following steps: according to the nucleotide type and sequence of the sense strand or the antisense strand in the double-stranded siRNA, in accordance with 3'to 5'
  • the nucleoside monomers are connected in order to synthesize the sense strand and the antisense strand.
  • the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization to obtain a solid-phase carrier.
  • the sense strand and the antisense strand attached to the solid phase carrier in the presence of coupling reaction conditions and coupling reagents, the compound represented by formula (321) and the sense strand attached to the solid phase carrier or connected to the solid phase
  • the antisense strand on the carrier is contacted to connect the compound of formula (321) to the sense strand or the antisense strand, wherein the compound of formula (321) is a formula in which R 4 contains the first functional group and the first functional group is a phosphoramidite group (321) compound; remove the protective group and cut with the solid phase carrier, separate and purify separately, obtain the sense strand or antisense strand of siRNA, and anneal, wherein the sense strand or antisense strand of the siRNA is connected with a conjugating group group.
  • the P atom in formula A59 is connected to the 3'end of the sense strand in the siRNA, and the preparation method of the siRNA conjugate represented by formula (308) includes:
  • the method for removing the protective group R k in the compound of formula (321) includes contacting the compound of formula (321) with a deprotection reagent under deprotection conditions.
  • the deprotection conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 30-300 seconds, and in some embodiments 50-150 seconds, the deprotection reagent may be selected from trifluoroacetic acid One or more of trichloroacetic acid, dichloroacetic acid, and monochloroacetic acid, in some embodiments, dichloroacetic acid.
  • the molar ratio of the deprotection reagent to the compound of formula (321) is 10:1 to 1000:1, in some embodiments 50:1 to 500:1.
  • the coupling reaction conditions and coupling reagents can use any conditions and reagents suitable for the aforementioned coupling reaction. In some embodiments, the same conditions and reagents as the coupling reaction in the solid phase synthesis method used can be used.
  • the conditions of the coupling reaction include a reaction temperature of 0-50°C, and in some embodiments, 15-35°C.
  • the molar ratio of the compound of formula (321) to the nucleoside monomer is 1:1-1:50, and in some embodiments is 1:2-1:5; the molar ratio of the compound of formula (321) and the coupling reagent can be 1:1-1:50, in some embodiments 1:3-1:10, and the reaction time is 200-3000 seconds, and in some embodiments 500-1500 seconds.
  • the coupling reagent is selected from one or more of 1H-tetrazole, 5-ethylthio 1H-tetrazole, 5-benzylthio 1H-tetrazole, in some embodiments 5-ethylsulfide Base 1H-tetrazolium.
  • the coupling reaction may be carried out in an organic solvent, and the organic solvent is selected from one or more of anhydrous acetonitrile, anhydrous DMF, and anhydrous methylene chloride, and in some embodiments is anhydrous acetonitrile.
  • the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
  • step (2) by the method of phosphoramidite nucleic acid solid-phase synthesis, using the nucleoside monomers prepared by the above steps and connected to the solid-phase carrier by the conjugate molecule, siRNA is synthesized according to the 3'-5' direction The sense strand SS of the conjugate. At this time, the conjugating group is attached to the 3'end of the resulting sense chain.
  • conditions for the solid-phase synthesis described in steps (2) and (3) include deprotection conditions of nucleoside monomers, types and amounts of deprotection reagents, coupling reaction conditions, types and amounts of coupling reagents, and capping reaction conditions.
  • the conditions, the type and amount of the capping reagent, the oxidation reaction conditions, the type and amount of the oxidizing reagent, the vulcanization reaction conditions, and the type and amount of the vulcanizing reagent adopt various reagents, amounts and conditions conventionally used in the art.
  • the solid-phase synthesis in steps (2) and (3) may use the following conditions:
  • the deprotection conditions of the nucleoside monomer include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 30-300 seconds, and in some embodiments 50-150 seconds, the deprotection reagent can be selected One or more of trifluoroacetic acid, trichloroacetic acid, dichloroacetic acid, monochloroacetic acid, and in some embodiments is dichloroacetic acid.
  • the molar ratio of the deprotection reagent to the 4,4'-dimethoxytrityl protecting group on the solid support can be 2:1-100:1, and in some embodiments, 3:1-50:1 .
  • the coupling reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, and the molar ratio of the nucleic acid sequence linked to the solid support to the nucleoside monomer can be 1:1-1:50. In some embodiments, it is 1:5-1:15; the molar ratio of the nucleic acid sequence connected to the solid-phase carrier and the coupling reagent is 1:1-1:100, and in some embodiments, it is 1:50-1:80
  • the reaction time and the choice of coupling reagents are the same as above.
  • the capping reaction conditions include a temperature of 0-50°C, 15-35°C in some embodiments, a reaction time of 5-500 seconds, and 10-100 seconds in some embodiments, and the selection of the capping reagent is the same as described above.
  • the molar ratio of the total amount of capping reagent to the nucleic acid sequence linked on the solid phase carrier is 1:100-100:1, and in some embodiments, 1:10-10:1.
  • the capping reagent uses equimolar amounts of acetic anhydride and N-methylimidazole
  • the molar ratio of acetic anhydride, N-methylimidazole and the nucleic acid sequence linked to the solid-phase carrier can be 1:1:10-10: 10:1, and in some embodiments 1:1:2-2:2:1.
  • the oxidation reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 1-100 seconds, and in some embodiments 5-50 seconds, the oxidizing reagent is iodine in some embodiments (In some embodiments, it is provided in the form of iodine water).
  • the molar ratio of the oxidizing reagent to the nucleic acid sequence connected to the solid support in the coupling step can be 1:1-100:1, and in some embodiments, 5:1-50:1.
  • the vulcanization reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 50-2000 seconds, and in some embodiments 100-1000 seconds, the vulcanization reagent is hydrogenation in some embodiments. Xanthan.
  • the molar ratio of the vulcanizing reagent to the nucleic acid sequence linked to the solid support in the coupling step is 10:1 to 1000:1, and in some embodiments, 10:1 to 500:1.
  • the method also includes separating the sense strand and antisense strand of the siRNA.
  • the separation method is well known to those skilled in the art, and generally includes cutting the synthesized nucleotide sequence from the solid support, removing the protective groups on the base, phosphate and ligand, purification and desalting .
  • Cleaving the synthesized nucleotide sequence from the solid support and removing the protective groups on the base, phosphate and ligand can be carried out according to the conventional cutting and deprotection methods in siRNA synthesis.
  • the obtained nucleotide sequence connected with the solid phase carrier is contacted with concentrated ammonia; in the process of deprotection, the protecting group YCOO- of the A46-A54 group is converted into a hydroxyl group, and the S 1 group is converted into the corresponding
  • the M 1 group produces the siRNA conjugate represented by formula (308).
  • the concentrated ammonia water can be 25-30% by weight ammonia water, and the amount of concentrated ammonia water can be 0.2ml/ ⁇ mol-0.8ml/ ⁇ mol compared with the target siRNA sequence.
  • the method further includes contacting the nucleotide sequence removed from the solid phase carrier with triethylamine trihydrofluoride to remove the 2'-TBDMS protection.
  • the corresponding nucleotide in the obtained target siRNA sequence has a free 2'-hydroxyl group.
  • the dosage of pure triethylamine trihydrofluoride can be 0.4ml/ ⁇ mol-1.0ml/ ⁇ mol. In this way, the siRNA conjugate represented by formula (308) can be obtained.
  • a preparative ion chromatography purification column can be used to complete the purification of nucleic acid through gradient elution of NaBr or NaCl; after the product is collected and combined, a reverse phase chromatography purification column can be used for desalting.
  • the non-bridging oxygen atom or sulfur atom in the phosphodiester bond or phosphorothioate bond between the nucleotides is basically bonded to the sodium ion, and the formula ( The siRNA conjugate shown in 308) basically exists in the form of sodium salt.
  • a well-known ion exchange method can be used to replace the sodium ions with hydrogen ions and/or other cations to obtain other forms of siRNA conjugates represented by formula (308). The cation is as described above.
  • the purity and molecular weight of the nucleic acid sequence can be tested at any time to better control the synthesis quality.
  • detection methods are well known to those skilled in the art.
  • the purity of nucleic acid can be detected by ion exchange chromatography, and the molecular weight can be determined by liquid mass spectrometry (LC-MS).
  • the annealing method is also well known to those skilled in the art.
  • the synthesized sense strand (SS chain) and antisense strand (AS chain) can be simply mixed in an equimolar ratio, heated to 70-95°C in water for injection, and then cooled at room temperature to form a double bond through hydrogen bonding. Chain structure.
  • the siRNA conjugate represented by formula (308) can be obtained.
  • the synthesized siRNA conjugate represented by formula (308) can be characterized by methods such as liquid-mass spectrometry chromatography, etc., by means of molecular weight detection. It is determined that the synthesized siRNA conjugate is the siRNA conjugate represented by formula (308) designed for the target, and the sequence of the synthesized siRNA is the sequence of the desired siRNA, for example, one of the sequences listed in Tables 1a-1g One.
  • the compound represented by formula (321) can be obtained by the following preparation method: the method includes combining the compound represented by formula (313) with a cyclic compound in an organic solvent, under esterification reaction conditions, and in the presence of a base and an esterification catalyst. Contact with acid anhydride, ion exchange, and separation to obtain the compound represented by formula (321):
  • n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , and S 1 are as described above;
  • R 6 is a group providing R 4 in formula (321); in some embodiments, R 6 has the structure shown in formula (A61):
  • R i is any group that can be connected to the N atom on the nitrogen-containing skeleton, connected to R k O and connected to a free hydroxyl group, and R k is a hydroxyl protecting group.
  • R 4 contains a first functional group and a second functional group as a hydroxyl protecting group, and the second functional group contains a compound of formula (321) having a structure represented by formula (C1) or (C2).
  • the esterification reaction conditions include a reaction temperature of 0-100°C and a reaction time of 8-48 hours. In some embodiments, the esterification reaction conditions are a reaction temperature of 10-40°C and a reaction time of 20-30. hour.
  • the organic solvent includes epoxy-based solvents, ether-based solvents, halogenated alkane-based solvents, dimethylsulfoxide, N,N-dimethylformamide, and N,N-diisopropylethylamine One or more of.
  • the epoxy solvent is dioxane and/or tetrahydrofuran
  • the ether solvent is diethyl ether and/or methyl tert-butyl ether
  • the halogenated alkane solvent is dichloromethane, trihydrofuran One or more of methyl chloride and 1,2-dichloroethane.
  • the organic solvent is dichloromethane. Relative to the compound represented by formula (313), the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
  • the cyclic anhydride is one of succinic anhydride, glutaric anhydride, adipic anhydride, or pimelic anhydride, and in some embodiments, succinic anhydride.
  • the molar ratio of the cyclic acid anhydride to the compound represented by formula (313) is 1:1-10:1, and in some embodiments, 2:1-5:1.
  • the esterification catalyst may be any catalyst that catalyzes the esterification reaction, for example, the catalyst may be 4-dimethylaminopyridine.
  • the molar ratio of the catalyst to the compound represented by formula (313) is 1:1-10:1, and in some embodiments, 2:1-5:1.
  • the base may be any inorganic base, organic base or a combination thereof. Considering solubility and product stability, the base may be, for example, a tertiary amine. In some embodiments, the tertiary amine is triethylamine or N,N-diisopropylethylamine. The molar ratio of the tertiary amine to the compound represented by formula (313) is 1:1-20:1, and in some embodiments, 3:1-10:1.
  • the ion exchange effect is to convert the compound of formula (321) into the desired form of carboxylic acid or carboxylate.
  • the method of ion exchange is well known to those skilled in the art. Suitable ion exchange solutions and exchange conditions can be used to obtain The conjugate molecule of M + cation will not be detailed here.
  • the ion exchange reaction is performed using a triethylamine phosphate solution, and the concentration of the triethylamine phosphate solution is 0.2-0.8M.
  • the triethylamine phosphate solution The concentration of the triethylamine phosphate solution is 0.4-0.6M, relative to the compound of formula (313), the amount of the triethylamine phosphate solution is 3-6L/mol, in a further embodiment 4-5L/mol.
  • any suitable separation method can be used to separate the compound of formula (321) from the reaction mixture.
  • the solvent can be removed by evaporation, and then the compound of formula (321) can be separated by chromatographic methods.
  • the solvent can be directly removed to obtain a crude product of the compound of formula (321), which can be directly used in subsequent reactions.
  • the preparation method of the compound of formula (321) further comprises under the conditions of the condensation reaction, in an organic solvent, in the presence of a condensation agent, a condensation catalyst and a tertiary amine, the product obtained by the above ion exchange reaction It is further contacted with a solid phase carrier containing an amino group or a hydroxyl group.
  • R 4 contains a first functional group and a second functional group
  • the first functional group contains a hydroxyl protecting group
  • the second functional group contains a compound of formula (321) having a structure represented by formula (C1′).
  • the solid-phase carrier is one of the carriers used in solid-phase synthesis of siRNA, some of which are well known to those skilled in the art.
  • the solid phase carrier may be selected from solid phase carriers containing active hydroxyl groups or amino functional groups.
  • the solid phase carrier is an amino resin or a hydroxyl resin.
  • the amino or hydroxyl resin has the following parameters: a particle size of 100-400 mesh, and a surface amino or hydroxyl loading of 0.2-0.5 mmol/g.
  • the dosage ratio of the compound represented by the formula (321) to the solid phase carrier is 10-400 ⁇ mol compound per gram of solid phase carrier ( ⁇ mol/g). In some embodiments, the dosage ratio of the compound represented by formula (321) to the solid phase carrier is 50-200 ⁇ mol/g.
  • the organic solvent may be any suitable solvent or mixed solvent known to those skilled in the art.
  • the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl.
  • the epoxy solvent is dioxane and/or tetrahydrofuran
  • the ether solvent is diethyl ether and/or methyl tert-butyl ether
  • the halogenated alkane solvent is dichloromethane, trihydrofuran One or more of methyl chloride and 1,2-dichloroethane.
  • the organic solvent is acetonitrile. Relative to the compound of formula (321), the amount of the organic solvent is 20-200 L/mol, and in some embodiments, 50-100 L/mol.
  • the condensing agent may be benzotriazol-1-yl-oxytripyrrolidino phosphonium hexafluorophosphate (PyBop), 3- Diethoxyphosphoryl-1,2,3-benzotriazin-4(3H)-one (3-(Diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)-one, DEPBT) and/or O- O-benzotriazol-1-yl-tetramethyluronium hexafluorophosphate (O-benzotriazol-1-yl-tetramethyluronium hexafluorophosphate), in some embodiments, the condensing agent is O-benzotriazol-tetramethyl Urea hexafluorophosphate.
  • the molar ratio of the condensing agent to the compound represented by formula (321) is 1:1-20:1, and in other embodiments is 1:1-5:1.
  • the tertiary amine is triethylamine and/or N,N-diisopropylethylamine, in some embodiments it is N,N-diisopropylethylamine; the tertiary The molar ratio of amine to the compound represented by formula (321) is 1:1-20:1, and in some embodiments, 1:1-5:1.
  • the method for preparing the compound of formula (321) may also include contacting the obtained condensation product with a capping reagent and an acylation catalyst in an organic solvent under capping reaction conditions to obtain the formula (321) Compound.
  • the function of the capping reaction is to remove any reactive functional groups that have not yet been completely reacted, so as to avoid unnecessary by-products in subsequent reactions.
  • the conditions of the capping reaction include a reaction temperature of 0-50°C, in some embodiments 15-35°C, and a reaction time of 1-10h, and in some embodiments 3-6h.
  • the capping reagent can be the capping reagent used in siRNA solid-phase synthesis, and the capping reagent used in siRNA solid-phase synthesis is well known to those skilled in the art.
  • the capping reagent consists of capping reagent 1 (cap1) and capping reagent 2 (cap2), wherein capping reagent 1 is N-methylimidazole, and in some embodiments, it is Pyridine/acetonitrile is provided as a mixed solution, wherein the volume ratio of pyridine to acetonitrile is 1:10-1:1, in some embodiments, 1:3-1:1, and the total volume of pyridine and acetonitrile is compared with N-methyl The volume ratio of imidazole is 1:1-10:1, and in some embodiments, 3:1-7:1.
  • the capping reagent 2 is acetic anhydride.
  • the capping reagent 2 is provided in the form of a solution of acetic anhydride in acetonitrile, wherein the volume ratio of acetic anhydride and acetonitrile is 1:1-1:10, and in a further embodiment is 1:2-1 :6.
  • the ratio of the volume of the pyridine/acetonitrile mixed solution of N-methylimidazole to the mass of the compound of formula (321) is 5ml/g-50ml/g, and in some embodiments 15ml/g- 30ml/g.
  • the ratio of the volume of the acetonitrile solution of acetic anhydride to the mass of the compound of formula (321) is 0.5ml/g-10ml/g, and in some embodiments is 1ml/g-5ml/g.
  • the capping reagent uses equimolar amounts of acetic anhydride and N-methylimidazole.
  • the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl.
  • the organic solvent is acetonitrile.
  • the amount of the organic solvent is 10-50 L/mol, and in some embodiments, 5-30 L/mol.
  • the acylation catalyst may be selected from any catalyst that can be used for esterification condensation or amidation condensation, such as basic heterocyclic compounds.
  • the acylation catalyst is 4-dimethylaminopyridine.
  • the mass ratio of the catalyst to the compound represented by formula (321) is 0.001:1 to 1:1, in some embodiments 0.01:1 to 0.1:1.
  • any suitable separation method may be used to separate the compound of formula (321) from the reaction mixture.
  • the compound of formula (321) can be obtained by fully washing with an organic solvent and filtering to remove unreacted reactants, excess capping reagents and other impurities.
  • the organic solvent is selected from acetonitrile and dichloromethane. , Methanol, in some embodiments acetonitrile.
  • the preparation method of the conjugate molecule represented by formula (321) includes combining the compound represented by formula (313) with phosphorous in an organic solvent, under coupling reaction conditions, and in the presence of a coupling reagent.
  • the diamide is contacted and separated to obtain the compound represented by formula (321).
  • R 4 contains a first functional group and a second functional group
  • the first functional group contains a hydroxyl protecting group
  • the second functional group contains a compound of formula (321) having a structure represented by formula (C3).
  • the coupling reaction conditions include that the temperature can be 0-50°C, for example 15-35°C, and the molar ratio of the compound of formula (313) to the phosphoramidite can be 1:1-1:50, For example, it is 1:5-1:15; the molar ratio of formula (313) compound and coupling reagent can be 1:1-1:100, for example, 1:50-1:80; reaction time can be 200-3000 seconds , For example, 500-1500 seconds.
  • the phosphoramidite may be, for example, bis(diisopropylamino)(2-cyanoethoxy)phosphine, which is commercially available or synthesized according to a method known in the art.
  • the coupling reagent is selected from one or more of 1H-tetrazole, 5-ethylthio 1H-tetrazole, 5-benzylthio 1H-tetrazole, for example 5-ethylthio 1H-tetrazole Azole.
  • the coupling reaction can be carried out in an organic solvent, and the organic solvent is selected from one or more of anhydrous acetonitrile, anhydrous DMF, and anhydrous methylene chloride, for example, anhydrous acetonitrile.
  • the amount of the organic solvent is 3-50 L/mol, for example, 5-20 L/mol.
  • the hydroxyl group in the compound of formula (313) reacts with the phosphoramidite to form a phosphoramidite group.
  • the solvent can be directly removed to obtain a crude product of the compound of formula (321), which can be directly used in subsequent reactions.
  • the preparation method of the compound of formula (321) further includes the following steps: under coupling reaction conditions, in an organic solvent, and in the presence of a coupling reagent, the separated product is further combined with a hydroxyl-containing product.
  • the solid support is brought into contact.
  • the compound of formula (321) is isolated.
  • R 4 contains a first functional group and a second functional group, the first functional group containing a hydroxyl protective group, the second functional group having a compound of the formula (C3 ') of formula (321) structure shown in FIG.
  • the solid phase carrier is a solid phase carrier known in the art that can be used for nucleic acid solid phase synthesis, for example, it may be a commercially available general solid phase carrier after deprotection reaction ( UnyLinker TM 300 Oligonucleotide Synthesis Support, Kinovate Life Sciences company, structure shown in formula B80):
  • the deprotection reaction is well known to those skilled in the art.
  • the deprotection conditions include a temperature of 0-50°C, such as 15-35°C, and a reaction time of 30-300 seconds, such as 50-150 seconds.
  • the deprotection reagent can be selected from one or more of trifluoroacetic acid, trichloroacetic acid, dichloroacetic acid, and monochloroacetic acid.
  • the deprotection reagent is dichloroacetic acid.
  • the molar ratio of the deprotection reagent to the -DMTr (4,4'-dimethoxytrityl) protecting group on the stationary phase is 2:1-100:1, for example, 3:1-50:1.
  • the coupling reaction conditions and the selection of coupling reagents can be as described above.
  • the free hydroxyl group formed in the deprotection reaction reacts with the phosphoramidite group to form a phosphite linkage.
  • the capping reaction conditions include a temperature of 0-50°C, such as 15-35°C, and a reaction time of 5-500 seconds, such as 10-100 seconds, and the capping reaction is performed in the presence of a capping reagent.
  • the selection and amount of capping reagent can be as described above.
  • the oxidation reaction conditions include a temperature of 0-50°C, such as 15-35°C, a reaction time of 1-100 seconds, such as 5-50 seconds, and an oxidizing reagent such as iodine (in some embodiments, iodine Provided in the form of water).
  • an oxidizing reagent such as iodine (in some embodiments, iodine Provided in the form of water).
  • the molar ratio of the oxidizing reagent to the nucleic acid sequence linked to the solid phase carrier is 1:1-100:1, for example, it may be 5:1-50:1.
  • R 6 is one of the groups of formula B7 or B8,
  • the compound represented by formula (313) can be obtained by the following preparation method: in an organic solvent, under amidation reaction conditions, and in the presence of a condensing agent and tertiary amine for amidation reaction, the formula (314) The compound is contacted with the compound represented by formula (A-1) or the compound represented by formula (A-2), and then separated:
  • n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , S 1 , q 2 and R k are each defined and selectable ranges as As mentioned earlier.
  • the amidation reaction conditions may include a reaction temperature of 0-100°C and a reaction time of 1-48 hours. In some embodiments, the amidation reaction conditions may include a reaction temperature of 10-40°C and a reaction time of 2- 16 hours.
  • the organic solvent is alcohol solvent, epoxy solvent, ether solvent, halogenated alkane solvent, dimethyl sulfoxide, N,N-dimethylformamide and N,N-diiso One or more of propylethylamine.
  • the alcohol solvent is one or more of methanol, ethanol, and propanol in some embodiments, and ethanol in some embodiments.
  • the epoxy solvent is dioxane and/or tetrahydrofuran in some embodiments.
  • the ether solvent is diethyl ether and/or methyl tert-butyl ether in some embodiments.
  • the halogenated alkane solvent is one or more of dichloromethane, chloroform and 1,2-dichloroethane in some embodiments. In some embodiments, the organic solvent is dichloromethane. Relative to the compound of formula (314), the amount of the organic solvent is 3-50 L/mol, and in a further embodiment, 3-20 L/mol.
  • the amidation reaction condensing agent is benzotriazol-1-yl-oxytripyrrolidinylphosphonium hexafluorophosphate, 3-diethoxyphosphoryl-1,2, 3-Benzazole 4(3H)-one, 4-(4,6-dimethoxytriazin-2-yl)-4-methylmorpholine hydrochloride, 2-ethoxy-1-ethoxy Carbonyl-1,2-dihydroquinoline (EEDQ) or O-benzotriazole-tetramethylurea hexafluorophosphate, in a further embodiment 3-diethoxyphosphoryl- 1,2,3-Benzazole 4(3H)-one.
  • the molar ratio of the amidation reaction condensing agent to the compound represented by formula (314) may be 1:1-10:1, and in some embodiments, 2.5:1-5:1.
  • the tertiary amine is triethylamine or N,N-diisopropylethylamine, and in a further embodiment is N,N-diisopropylethylamine.
  • the molar ratio of the tertiary amine to the compound represented by formula (314) is 3:1-20:1, and in some embodiments, 5:1-10:1.
  • the compounds of formula (A-1) and formula (A-2) can be prepared in any suitable manner.
  • R k is a DMTr group
  • the compound of formula (A-1) can be prepared by reacting calcium glycerate with DMTrCl; similarly, 3-amino-1,2-propanediol can be contacted with cyclic anhydride first, and then The compound of formula (A-2) is prepared by reacting with DMTrCl.
  • the compound of formula (313) can also be prepared by sequentially reacting the compound represented by formula (314) with the cyclic anhydride, 3-amino-1,2-propanediol and DMTrCl. It is easily understood by those skilled in the art that these modifications will not affect the structure and function of the compound of formula (313), and these modifications are easily realized by those skilled in the art on the basis of the above methods.
  • any suitable separation method can be used to separate the compound of formula (313) from the reaction mixture.
  • the solvent can be removed by evaporation, and then the compound of formula (313) can be separated by chromatographic methods.
  • the solvent can be directly removed to obtain a crude product of the compound of formula (313), which can be directly used in subsequent reactions.
  • the compound represented by formula (314) can be obtained by the following preparation method: the method includes in an organic solvent, in the presence of a condensing agent for amidation reaction and a tertiary amine, under condensation reaction conditions, the formula ( The compound represented by 320) is contacted with the compound represented by formula (316) and then separated:
  • n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , and R 15 have the same definitions and selectable ranges as described above.
  • the compound of formula (316) can be prepared by, for example, the compounds disclosed in J. Am. Chem. Soc. 2014, 136, 16958-16961, or the compound of formula (316) can be prepared by a person skilled in the art by various methods, for example, Certain compounds of formula (316) were prepared with reference to the method disclosed in Example 1 of US Patent No. 8,106,022 B2, and the entire contents of the above documents are incorporated herein by reference in their entirety.
  • the condensation reaction conditions include a reaction temperature of 0-100°C and a reaction time of 0.1-24 hours, and in some embodiments, a reaction temperature of 10-40°C and a reaction time of 0.5-16 hours.
  • the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl.
  • the halogenated alkane solvent is one or more of dichloromethane, chloroform and 1,2-dichloroethane.
  • the organic solvent is two Methyl chloride. Relative to the compound of formula (320), the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
  • the amidation reaction condensing agent is benzotriazol-1-yl-oxytripyrrolidinylphosphonium hexafluorophosphate, 3-diethoxyphosphoryl-1,2, 3-Benzazole 4(3H)-one (DEPBT), O-benzotriazole-tetramethylurea hexafluorophosphate/ester, 4-(4,6-dimethoxytriazin-2-yl) )
  • One or more of 4-methylmorpholine hydrochloride or 1-hydroxybenzotriazole in a further embodiment, benzotriazol-1-yl-oxytripyrrolidinyl phosphonium A mixture of hexafluorophosphate and 1-hydroxybenzotriazole, wherein benzotriazol-1-yl-oxytripyrrolidinyl phosphonium hexafluorophosphate and 1-hydroxybenzotriazole are etc. Molar amount. The molar ratio of the total amidation reaction condensing agent to the compound
  • the tertiary amine can be N-methylmorpholine, triethylamine, or N,N-diisopropylethylamine, and in some embodiments, it is N-methylmorpholine; the tertiary amine has the same formula ( The molar ratio of the compound shown in 316) may be 2:1-10:1, and in some embodiments, 2:1-5:1.
  • any suitable separation method can be used to separate the compound of formula (314) from the reaction mixture.
  • the solvent can be removed by evaporation, and then the compound of formula (314) can be separated by chromatography.
  • the solvent can be directly removed to obtain a crude product of the compound of formula (314), which can be directly used in subsequent reactions.
  • siRNA conjugate of the present disclosure can also be used in combination with other pharmaceutically acceptable excipients, which can be one or more of various formulations or compounds conventionally used in the art.
  • pharmaceutically acceptable excipients can be one or more of various formulations or compounds conventionally used in the art.
  • pharmaceutical composition please refer to the above about the present disclosure. Description of the pharmaceutical composition.
  • siRNA composition and conjugate of the present disclosure
  • the present disclosure provides that the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure are used in the preparation of drugs for the treatment and/or prevention of diseases or physiological conditions caused by abnormal expression of PCSK9 gene the use of.
  • the present disclosure provides a method for preventing and/or treating diseases or physiological conditions caused by abnormal expression of the PCSK9 gene, the method comprising applying an effective amount of the siRNA and/or pharmaceutical composition of the present disclosure and/or Or the siRNA conjugate is administered to a subject in need.
  • the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure can be used to prevent and/or treat diseases or physiological conditions caused by the abnormal expression of the PCSK9 gene, or to prepare for the prevention and/or treatment of Drugs for diseases or physiological conditions caused by abnormal expression of PCSK9 gene.
  • the disease or physiological condition caused by the abnormal expression of the PCSK9 gene refers to hypercholesterolemia, and cardiovascular diseases such as atherosclerosis, coronary heart disease, and hypertension caused thereby.
  • administration/administration refers to a method or approach that allows the siRNA, pharmaceutical composition and/or siRNA conjugate of the present disclosure to be at least partially positioned at a desired site to produce a desired effect.
  • the siRNA, pharmaceutical composition, and/or siRNA conjugate of the present disclosure are placed in a subject.
  • the routes of administration suitable for the methods of the present disclosure include local administration and systemic administration. Generally speaking, local administration results in the delivery of more siRNA conjugates to a specific site compared to the subject's systemic circulation; while systemic administration results in the delivery of the siRNA, pharmaceutical composition and/or siRNA conjugate of the present disclosure Basic systemic circulation to the subject.
  • an administration method capable of delivering drugs to the liver is adopted.
  • the subject can be administered to the subject by any suitable route known in the art, including but not limited to: oral or parenteral routes, such as intravenous administration, intramuscular administration, subcutaneous administration, and transdermal administration. Medicine, airway administration (aerosol), pulmonary administration, nasal administration, rectal administration and topical administration (including buccal administration and sublingual administration).
  • the frequency of administration can be one or more times per day, every week, every two weeks, every three weeks, every month, every two months, every three months, every six months, or every year.
  • the dosage of the siRNA, pharmaceutical composition or siRNA conjugate described in the present disclosure can be a conventional dosage in the art, and the dosage can be determined according to various parameters, especially the age, weight and sex of the subject. Toxicity and efficacy can be measured in cell culture or laboratory animals through standard pharmaceutical procedures, such as measuring LD 50 (lethal dose that kills 50% of the population), ED 50 (in quantitative response, the dose that can cause 50% of the maximum response intensity, In the qualitative response, it refers to the dose that can cause a positive response in 50% of the subjects) or IC 50 (the concentration of inhibitor/drug when the quantitative response is inhibited by half).
  • the range of human doses can be derived based on data obtained from cell culture analysis and animal studies.
  • the amount of siRNA is calculated as: ( i)
  • the amount of siRNA can be 0.001-100 mg/kg body weight, in some embodiments 0.01-50 mg/kg body weight, in some embodiments 0.05-20 mg/kg body weight, and in other embodiments In some embodiments, it is 0.1-15 mg/kg body weight, and in other embodiments, it is 0.1-10 mg/kg body weight; (ii) For a pharmaceutical composition formed by siRNA and a pharmaceutically acceptable carrier, the amount of siRNA may be 0.001-50 mg/kg The body weight is 0.01-10 mg/kg body weight in some embodiments, 0.05-5 mg/kg body weight in some embodiments, and 0.1-3 mg/kg body weight in some embodiments.
  • the present disclosure provides a method for inhibiting PCSK9 gene expression in liver cells, the method comprising combining an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure with the liver.
  • Cell contact, the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure are introduced into the hepatocytes, and the purpose of inhibiting PCSK9 gene expression in the hepatocytes is achieved through the mechanism of RNA interference.
  • the liver cells may be selected from liver cancer cell lines such as SMMC-7721, HepG2, Huh7, or isolated primary liver cells.
  • the cell is a HepG2 liver cancer cell.
  • the amount of siRNA in the provided modified siRNA, pharmaceutical composition and/or siRNA conjugate is generally such an amount that it is sufficient to reduce the expression of the target gene, and This results in an extracellular concentration of 1 pM to 1 ⁇ M, or 0.01 nM to 100 nM, or 0.05 nM to 50 nM, or 0.05 nM to about 5 nM at the surface of the target cell.
  • the amount required to achieve this local concentration will vary with various factors, including the delivery method, the delivery site, the number of cell layers between the delivery site and the target cell or tissue, the delivery route (local or systemic), etc. .
  • the concentration at the delivery site can be significantly higher than the concentration at the surface of the target cell or tissue.
  • the present disclosure provides a kit comprising an effective amount of at least one of the modified siRNA, pharmaceutical composition and siRNA conjugate of the present disclosure.
  • kits described herein can provide modified siRNA in one container.
  • the kits described herein may include a container that provides pharmaceutically acceptable excipients.
  • the kit may also contain other ingredients, such as stabilizers or preservatives.
  • the kits described herein may contain at least one other therapeutic agent in a container other than the container that provides the modified siRNA described herein.
  • the kit may include instructions for mixing the modified siRNA with pharmaceutically acceptable carriers and/or excipients or other ingredients (if any).
  • the modified siRNA and a pharmaceutically acceptable carrier and/or adjuvant, and the modified siRNA, pharmaceutical composition and/or siRNA conjugate and/or conjugate, and/ Or pharmaceutically acceptable excipients can be provided in any form, such as liquid form, dried form or lyophilized form.
  • the modified siRNA and pharmaceutically acceptable carriers and/or adjuvants and the pharmaceutical composition and/or conjugate and optional pharmaceutically acceptable adjuvants are substantially pure and/or Sterile.
  • sterile water can be provided in the kit of the present disclosure.
  • the reagents and media used in the following examples are all commercially available products, and the nucleic acid electrophoresis, real-time PCR and other operations used are described in Molecular Cloning (Cold Spring Harbor Laboratory Press (1989)) Method to proceed.
  • Lipofectamine TM 2000 (Invitrogen) is used as the transfection reagent, and the specific operation refers to the instructions provided by the manufacturer .
  • the experimental data are (Mean ⁇ standard error) means that the data analysis uses Graphpad prism 6.0 statistical analysis software.
  • the conjugate 1 shown in Table 3 was synthesized, and its number was L10-siPCSKa1M1S.
  • the siRNA conjugated in this conjugate has the sense strand and antisense strand sequences corresponding to conjugate 1 in Table 3.
  • the L-10 compound was synthesized according to the following method:
  • GAL-1 N-acetyl-D-galactosamine hydrochloride, CAS number: 1772-03-8, purchased from Ningbo Hongxiang Biochemical Company, 463.8mmol
  • acetic anhydride purchased from Enox Company, 5565.6mmol
  • TMSOTf Trimethylsilyl fluoromethanesulfonate
  • step (1-1-1b) The GAL-3 (26.9g, 81.7mmol) obtained in step (1-1-1b) was dissolved in 136ml of anhydrous 1,2-dichloroethane, and the dried 30g molecular sieve powder, then add 9.0g 5-hexen-1-ol (CAS number: 821-41-0, purchased from Adamas-beta company, 89.9mmol), stir at room temperature for 30 minutes, add under ice bath and nitrogen protection 9.08g TMSOTf (40.9mmol), stirred and reacted overnight at room temperature.
  • 9.0g 5-hexen-1-ol CAS number: 821-41-0, purchased from Adamas-beta company, 89.9mmol
  • the filtrate is diluted with 300ml dichloromethane, filtered with diatomaceous earth, and then 500ml saturated sodium bicarbonate aqueous solution is added and stirred for 10 minutes to wash, separate the organic phase, the aqueous phase is extracted once with 300ml dichloroethane, and the organic phases are combined They were washed with 300ml saturated sodium bicarbonate aqueous solution and 300ml saturated brine respectively, the organic phase was separated, dried with anhydrous sodium sulfate, and the solvent was evaporated under reduced pressure to obtain 41.3g of yellow sugar thin product GAL-4, which was carried out directly without purification.
  • One-step oxidation reaction is carried out directly without purification.
  • GAL-4 (14.9g, 34.7mmol,) obtained according to the method described in step (1-1-1c) was dissolved in a mixed solvent of 77ml dichloromethane and 77ml acetonitrile, and 103ml deionized water and 29.7g were added respectively Sodium periodate (CAS number: 7790-28-5, purchased from Aladdin Company, 138.8mmol), stirred under ice water bath for 10 minutes, adding ruthenium trichloride (CAS number: 14898-67-0, purchased from An Nai Kyrgyzstan, 238mg, 1.145mmol), react at room temperature overnight.
  • the reaction solution was diluted with 300 ml of water and stirred, and saturated sodium bicarbonate was added to adjust the pH to about 7.5.
  • the organic phase was separated and discarded.
  • the aqueous phase was extracted with dichloromethane three times with 200 ml each time and the organic phase was discarded. Adjust the pH of the aqueous phase to about 3 with citric acid solid, extract three times with 200ml of dichloromethane, combine the organic phases, dry with anhydrous sodium sulfate, and evaporate the solvent under reduced pressure to obtain 6.85g of white foamy solid product GAL-5 .
  • step (1-1-2) The L-8 (40g, 27.09mmol, obtained by combining multiple batches) obtained in step (1-1-2) and A-1 (41.418g, 81.27) obtained in step (1-1-3a) mmol), dissolve in 271ml of dichloromethane, add 3-diethoxyphosphoryl-1,2,3-benzoxazole 4(3H)-one (DEPBT) (24.318g, 81.37mmol), then add diiso Propylethylamine (21.007g, 162.54mmol), stirred for 1.5h at 25°C, washed the organic phase with 800ml saturated sodium bicarbonate, and extracted the aqueous phase with dichloromethane 3 times, each time with 50ml, washed with 150ml saturated brine The organic phase and the aqueous phase were extracted once with 50 ml of dichloromethane.
  • DEPBT 3-diethoxyphosphoryl-1,2,3-benzoxazole 4(3H)-one
  • the L-10 compound is prepared by attaching the L-9 conjugated molecule to the solid support.
  • HBTU O-benzotriazole-tetramethylurea hexafluorophosphate
  • DIEA diisopropylethylamine
  • the filter cake was rinsed with DCM twice, 300ml each time, and acetonitrile rinsed 3 times, each 300ml each time, vacuum oil pump drying for 18h, and then add the raw materials (CapA, CapB, 4-dimethylaminopyridine (DMAP) and acetonitrile) according to the feeding ratio shown in Table 2 for capping reaction.
  • DMAP 4-dimethylaminopyridine
  • the L-10 compound (ie, the L-9 conjugated molecule connected to the solid support) was 102 g, and the loading was 90.8 ⁇ mol/g.
  • CapA and CapB are capping reagent solutions
  • CapA is a pyridine/acetonitrile mixed solution of 20% by volume N-methylimidazole, and the volume ratio of pyridine to acetonitrile is 3:5
  • CapB is a solution of 20% by volume of acetic anhydride in acetonitrile.
  • each connection of a nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization. Among them, when two nucleotides are connected by phosphate ester, when the next nucleoside monomer is connected, there are four steps of deprotection, coupling, capping, and oxidation. When two nucleotides are connected by phosphorothioate, when the next nucleoside monomer is connected, there are four steps of protection, coupling, capping and vulcanization.
  • the synthesis conditions are given as follows:
  • the nucleoside monomer is provided in 0.1M acetonitrile solution.
  • the conditions of the deprotection reaction in each step are the same, that is, the temperature is 25°C, the reaction time is 70 seconds, and the deprotection reagent is dichloroacetic acid in dichloromethane (3% v/v), the molar ratio of dichloroacetic acid to the 4,4'-dimethoxytrityl protecting group on the solid support is 5:1.
  • each step of the coupling reaction is the same, including the temperature of 25°C, the molar ratio of the nucleic acid sequence connected to the solid-phase carrier to the nucleoside monomer is 1:10, the molar ratio of the nucleic acid sequence connected to the solid-phase carrier and the coupling reagent The ratio is 1:65, the reaction time is 600 seconds, and the coupling reagent is a 0.5 M acetonitrile solution of 5-(Ethylthio)-1H-tetrazole (ETT).
  • ETT Ethylthio-1H-tetrazole
  • the capping conditions for each step are the same, including a temperature of 25°C and a reaction time of 15 seconds.
  • the oxidation reaction conditions for each step are the same, including a temperature of 25°C, a reaction time of 15 seconds, and an oxidizing reagent of 0.05M iodine water.
  • the molar ratio of iodine to the nucleic acid sequence connected to the solid phase carrier in the coupling step is 30:1.
  • each step of the vulcanization reaction is the same, including the temperature of 25°C, the reaction time of 300 seconds, and the vulcanizing reagent is hydroxanthin.
  • the molar ratio of the vulcanizing reagent to the nucleic acid sequence connected to the solid support in the coupling step is 120:1.
  • the nucleic acid sequence connected on the solid phase carrier is cut, deprotected, purified, and desalted in sequence, and then lyophilized to obtain the sense strand, where,
  • the cutting and deprotection conditions are as follows: add the synthesized nucleotide sequence linked to the carrier into 25wt% ammonia water, the amount of ammonia water is 0.5ml/ ⁇ mol, react at 55°C for 16h, filter to remove the remaining carrier, and remove the supernatant. Concentrate to dryness in vacuo.
  • eluent A 20mM sodium phosphate (pH 8.1)
  • elution gradient: eluent A: eluent B 100:0-50:50
  • the specific conditions include using a Sephadex G25 (Sephadex G25) as the filler and eluting with deionized water.
  • the detection method is as follows: ion exchange chromatography (IEX-HPLC) is used to detect the purity of the above-mentioned sense chain, and liquid mass spectrometry (LC-MS) is used to analyze the molecular weight. The measured value is consistent with the theoretical value, indicating that the synthesized 3'end is the sense strand SS conjugated with an L-9 conjugate molecule.
  • IEX-HPLC ion exchange chromatography
  • LC-MS liquid mass spectrometry
  • the universal solid-phase carrier (UnyLinker TM loaded Solid Supports, Kinovate Life Sciences, Inc.) initiated the cycle to synthesize the antisense strand of Conjugate 1 in Table 3.
  • the deprotection, coupling, capping, oxidation or vulcanization reaction conditions, cleavage and deprotection, purification and desalting conditions in the solid-phase synthesis method are the same as the synthetic sense strand.
  • the purity of the antisense strand was detected by ion exchange chromatography (IEX-HPLC), and the molecular weight was analyzed by liquid mass spectrometry (LC-MS). As a result, the measured value agrees with the theoretical value, indicating that the synthesized antisense strand AS has the target sequence.
  • the sense strand and antisense strand were separately dissolved in water for injection to obtain a 40 mg/mL solution, mixed in an equimolar ratio, heated at 50°C for 15 min, and cooled at room temperature to obtain the annealed product, which was freeze-dried , Get lyophilized powder.
  • Use ultrapure water (Milli-Q ultrapure water meter, resistivity 18.2M ⁇ *cm(25°C)) to dilute the conjugate to a concentration of 0.2mg/mL, then use liquid mass spectrometry (LC-MS, Liquid Chromatography-Mass Spectrometry, purchased from Waters, Model: LCT Premier) for molecular weight detection.
  • the measured value is consistent with the theoretical value, indicating that the synthesized siRNA conjugate 1 is a target designed double-stranded nucleic acid sequence with an L-9 conjugate molecule. Its structure is shown in formula (403), and the conjugated siRNA sequence is shown in Table 3 and corresponds to the sequence of conjugate 1 (also known as L10-siPCSKa1M1S).
  • conjugates 2-7 shown in Table 3 were synthesized, and molecular weight detection was performed. The difference is that the sense strand and antisense strand sequences used in the synthesis are respectively shown in Table 3. The sequence shown corresponds to the sense strand and antisense strand of the siRNA conjugated in Conjugate 2, Conjugate 3, Conjugate 4, Conjugate 5, Conjugate 6, or Conjugate 7. Thus, conjugates 2-7 were obtained respectively.
  • Table 3 lists the conjugate number and siRNA sequence composition.
  • siRNA 1 shown in Table 4 was synthesized using the same method as Preparation Example 1, except that:
  • the sequence of siRNA 1 is compared with the sequence of the siRNA antisense strand conjugated in Conjugate 1.
  • the antisense strand of siRNA 1 has a 5'at the first nucleotide at the 5'-end -Phosphoric acid. Therefore, in the process of preparing the antisense chain according to the solid-phase phosphoramidite method, after connecting the last nucleoside monomer of the antisense chain, the CPR-I monomer is deprotected, coupled, capped, and oxidized. (Suzhou Gima, Cat#13-2601-XX) is connected to the 5'end of the antisense strand to form a 5'-phosphate modification.
  • siRNA sense strand and antisense strand used in the synthesis are the sense strand and antisense strand corresponding to siRNA 2 as shown in Table 4 Sequence to get siRNA2.
  • siRNA 3, siRNA 4, siRNA 5 or siRNA 6 are obtained respectively.
  • Table 4 lists the siRNA number and siRNA sequence composition.
  • each antisense strand of siRNA 1-6 in the in vitro psiCHECK system was detected to inhibit its expression in the target plasmid, and the expression of each siRNA sense strand, antisense strand seed region or sense strand seed region of its off-target plasmid was inhibited.
  • modified siRNA with a DNA seeded arm is a powerful tool for mammalian gene silence with significantly reduced off-target, effect.
  • the method described in 2136-2151 construct a detection plasmid, co-transfect the detection plasmid and the siRNA to be tested into HEK293A cells, and reflect the on-target activity of the siRNA through the expression level of the dual luciferase reporter gene Off-target effect. Specific steps are as follows:
  • GSCM means the target plasmid
  • PSCM GSSM
  • PSSM means off-target plasmid
  • GSCM is used to detect the on-target activity of the siRNA antisense strand.
  • GSCM contains a target sequence that contains a region that is completely complementary to the sequence of the siRNA antisense strand to be tested. Among them, siRNA 1, 2, 4, 5 The target sequence in GSCM corresponding to 6 is shown in SEQ ID NO: 373:
  • the target sequence in GSCM corresponding to siRNA 3 is shown in SEQ ID NO: 374:
  • PSCM used to detect the off-target effect of the sense strand, contains a target sequence that is exactly the same as the sequence of the antisense strand of the siRNA to be tested.
  • the target sequence in the PSCM corresponding to each siRNA is shown in Table 5a:
  • siRNA PSCM target sequence (sequence direction 5'-3') SEQ ID NO siRNA 1 GATAAATGTCTGCTTGCTTGG 375
  • siRNA 2 TTAATAAAAATGCTACAAAAC 376 siRNA 3 TTCCGAATAAACTCCAGGCCT 377 siRNA 4 AGTTACAAAAGCAAAACAGGT 378 siRNA 5 ATAAAAATGCTACAAAACCCA 379 siRNA 6 TTTTATTTTAAAAAGTCACCA 380
  • GSSM is used to detect the off-target effect of the seed region of the antisense strand.
  • the target sequence in GSSM corresponding to each siRNA is shown in Table 5b:
  • siRNA GSSM target sequence (sequence direction 5'-3') SEQ ID NO siRNA 1 AACCTACCTACTCCATTTATC 381 siRNA 2 TGGGGTGCTACGGTTTATTAA 382 siRNA 3 CTTAAGTTCTGGGATTCGGAA 383 siRNA 4 CAAGTGGGGTAGGTTGTAACT 384 siRNA 5 GTTTGGGGTGCTAATTTTTAT 385 siRNA 6 GTTGTCAGGGGGCAAATAAAA 386
  • PSSM PSMA-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S-S RNA sequence corresponding to each siRNA is shown in Table 5c:
  • siRNA PSSM target sequence (sequence direction 5'-3') SEQ ID NO siRNA 1 TCGCCCGTGAGGCTTGCTTTT 387 siRNA 2 GGCCGCCCCCGGCTACAAACA 388 siRNA 3 GGAATCCGCCCCTCCAGGCAG 389 siRNA 4 CTGGCACCCCTCAAAACAGTG 390 siRNA 5 CGCCCCCGTAGACAAAACCAC 391 siRNA 6 GGGGCGGGGCCAAAGTCACAC 392
  • H-DMEM complete medium HyClone
  • FBS fetal bovine serum
  • penicillin double antibody Penicillin-Streptomycin, HyClone
  • each A1-A11 solution contains 1 ⁇ l of the above 11 concentrations of siRNA working solution, 0.05 ⁇ l of detection plasmid working solution (containing 10ng of detection plasmid) and 10 ⁇ l of Opti-MEM medium.
  • each B solution contains 0.2 ⁇ l Lipofectamine TM 2000 and 10 ⁇ l Opti-MEM medium.
  • each C solution contains 0.05 ⁇ l of detection plasmid working solution (containing 10ng of detection plasmid) and 10 ⁇ l Opti-MEM medium.
  • transfection complex X1-X11 In the culture wells, add transfection complex X1-X11, mix evenly, add 20 ⁇ l/well, and add 3 transfection complexes with the same siRNA concentration to three different culture wells to obtain the final siRNA concentration.
  • Co-transfection mixtures of 10nM, 3.33nM, 1.11nM, 0.37nM, 0.123nM, 0.0412nM, 0.0137nM, 0.0046nM, 0.0015nM, 0.0005nM and 0.00017nM were recorded as test groups 1-11.
  • the transfection complex X12 was added to obtain a transfection mixture without siRNA.
  • the added amount was 20 ⁇ l/well, which was recorded as the control group.
  • the co-transfection mixture containing siRNA and the transfection mixture without siRNA were transfected in the culture wells for 4 hours, and each well was supplemented with 100 ⁇ l H-DMEM complete medium containing 20% FBS. Place the 96-well plate in a CO 2 incubator and continue culturing for 24 hours.
  • GSCM and siRNA 2-6 were co-transfected using the same method as the co-transfection of GSCM and siRNA 1, except that siRNA 2-6 was used in turn instead of siRNA1.
  • PSCM and siRNA 1-6 were co-transfected in the same way as GSCM and siRNA 1-6, except that PSCM was used instead of GSCM.
  • GSSM and siRNA 1-6 were co-transfected using the same method as GSCM and siRNA 1-6, except that GSSM was used instead of GSCM.
  • PSSM and siRNA 1-6 were co-transfected using the same method as GSCM and siRNA 1-6, except that PSSM was used instead of GSCM.
  • the luminescence ratio Ratio (test) or Ratio (control) of each test group or control group is the average of the ratio of the three culture wells; take the luminescence ratio of the control group as the benchmark , Normalize the luminescence ratio of each test group to obtain the ratio R of Ratio (test)/Rati (control), which represents the expression level of the Renilla reporter gene, that is, the relative residual activity.
  • the inhibition rate of siRNA was (1-R) ⁇ 100%.
  • Y is the ratio R, the relative residual activity of Renilla
  • X is the logarithm of the transfection siRNA concentration
  • Bot is the Y value at the bottom of the steady-state period
  • Top is the Y value at the top of the steady-state period
  • X' is the corresponding X value when Y is halfway from the bottom to the top
  • HillSlope is the slope of the curve at X'.
  • siRNA provided by the present disclosure has a higher inhibitory activity in HEK293A cells in vitro, with an IC 50 between 0.0194-0.0561 nM.
  • siRNA of the present disclosure has good targeting specificity, and there is no obvious off-target effect in the sense strand, antisense strand seed region, and sense strand seed region.
  • Each conjugate was prepared into a solution of 9 mg/ml (based on siRNA, the same below) with sterile sodium chloride injection, the administration volume of each animal was 1 ml/kg, and the administration dose was 9 mg/kg.
  • the n days before administration is defined as D-n, the day of administration is defined as D1, and the nth day after administration is defined as Dn.
  • Liver puncture was performed on the cynomolgus monkeys administered with Conjugate 1, Conjugate 2, Conjugate 4, Conjugate 5, or Conjugate 7 on D-7 and D15, and the liver was collected each time
  • the tissue is about 2 ⁇ 2 ⁇ 8mm 3 , stored in a 1.5mL sterile EP tube containing 1ml RNAlater preservation solution (Sigma Aldrich), placed in a refrigerator at 4°C for 24h, and then transferred to -80°C for storage.
  • liver tissue was homogenized with a tissue homogenizer, and then Trizol (Thermo Fisher) was used to extract the total RNA from the liver tissue according to the operation steps of total RNA extraction in the manual.
  • RNA extracted from the liver tissue of each animal 1 ⁇ g total RNA was used as the template for reverse transcription, and the reverse transcription kit Goldenstar TM RT6 cDNA Synthesis Kit (purchased from Beijing Kinco Xinye Biotechnology Co., Ltd., catalog number TSK301M)
  • the reagent provided by among which Goldenstar TM Oligo (dT) 17 is selected as the primer, and 20 ⁇ l of the reverse transcription reaction system is configured according to the reverse transcription operation steps in the kit manual, and the total RNA of each liver is reversely transcribed.
  • the conditions for reverse transcription are: incubate each reverse transcription reaction system at 50°C for 50 minutes, then incubate at 85°C for 5 minutes, and finally incubate at 4°C for 30 seconds. After the reaction is over, add 80 ⁇ l of DEPC water to each reverse transcription reaction system to obtain Solution containing cDNA.
  • each reverse transcription reaction system For each reverse transcription reaction system, take 5 ⁇ l of the above-mentioned cDNA-containing solution as the qPCR template, and use SYBR qPCR SuperMix Plus kit (purchased from Nearshore Protein Technology Co., Ltd., catalog number E096-01B) provides reagents with 20 ⁇ l qPCR reaction system, among which, the PCR primer sequences used to amplify the target gene PCSK9 and the internal reference gene GAPDH are shown in Table 7 As shown, the final concentration of each primer is 0.25 ⁇ M. Place each qPCR reaction system on the ABI StepOnePlus Real-Time PCR machine, and use the three-step method for amplification.
  • the amplification program is 95°C pre-denaturation for 10 minutes, then 95°C denaturation for 30s, 60°C annealing for 30s, and 72°C extension for 30s.
  • a product W containing the amplified target gene PCSK9 and the internal reference gene GAPDH was obtained.
  • the product W was incubated at 95°C for 15s, 60°C for 1 min, and 95°C for 15s.
  • the real-time fluorescent quantitative PCR instrument collected the melting curves of the target gene PCSK9 and the internal reference gene GAPDH in the product W to obtain the Ct value.
  • ⁇ Ct (D15) Ct (D15 target gene)-Ct (D15 internal reference gene)
  • ⁇ Ct (D-7) Ct (D-7 target gene)-Ct (D-7 internal reference gene)
  • ⁇ Ct(D-7) ⁇ Ct(D-7)- ⁇ Ct(D-7 average)
  • ⁇ Ct (D-7 average) is the arithmetic mean of ⁇ Ct (D-7) of each animal before administration.
  • each animal corresponds to a ⁇ Ct (D15) and ⁇ Ct (D-7).
  • D-7 normalize the expression level of D15 PCSK9 mRNA of this animal, and define the expression level of D-7PCSK9 mRNA as 100%.
  • the inhibition rate of the conjugate to PCSK9 mRNA was the arithmetic mean of the inhibition rate corresponding to each animal in this group.
  • Table 8 shows the inhibition rate of each conjugate on liver PCSK9 mRNA.
  • Conjugate Numbering Inhibition rate% Conjugate 1 L10-siPCSKa1M1S 79 ⁇ 4 Conjugate 2 L10-siPCSKb1M1S 68 ⁇ 11 Conjugate 4 L10-siPCSKd1M1S 81 ⁇ 6 Conjugate 5 L10-siPCSKe1M1S 65 ⁇ 18 Conjugate 7 L10-siPCSKg4M5S 56 ⁇ 22
  • venous blood was collected on D-15, D-9, and D1 before administration, and venous blood was collected on D3, D8, D14, D22, and D29 after administration. Blood was collected once a week and continued for 18 weeks until D127.
  • venous blood was collected on D-14, D-7, and D1 before administration, and venous blood was collected on D4, D8, D15, D22, and D29 after administration. After that, blood was collected once a week for 12 weeks until D85.
  • the blood samples were collected to separate serum at room temperature.
  • Inhibition rate of PCSK9 protein expression (1-PCSK9 protein content after administration/PCSK9 protein content before administration) ⁇ 100%.
  • the PCSK9 protein content before administration is the PCSK9 protein content of D-9.
  • Normalized blood lipid level (blood lipid content after administration/blood lipid content before administration) ⁇ 100%.
  • Inhibition rate of blood lipid (1-blood lipid content after administration / blood lipid content before administration) ⁇ 100%.
  • the blood lipid content before administration is the arithmetic mean of the three blood lipids of D-15, D-9 and D1 before administration; blood lipid refers to LDL-c or CHO.
  • pre-administration blood lipid level 100%, which is represented by D0 in Figs. 3 and 4.
  • the blood lipid (LDL-c and CHO) content in the serum of cynomolgus monkeys administered with Conjugate 7 was detected.
  • the serum obtained at each time point after administration of conjugate 7 in (2-2) is selected for blood lipid detection;
  • the blood lipid content before administration is D-14, D-7 before administration And
  • D1 the arithmetic average of three blood lipids.
  • the inhibition rate of LDL-c was 36% on the 22nd day after a single administration; from the second week to the fourth week after the administration, the inhibition rate of LDL-c was maintained at about 30%; During the observation period of up to 11 weeks, the serum LDL-c level of NHP administered with conjugate 7 was always lower than before administration.
  • the inhibition rate of CHO was 38% on the 22nd day after a single administration; the inhibition rate of CHO was basically maintained above 30% from the 2nd week to the 8th week after administration; During the 11-week observation period, the serum CHO level of NHP administered with conjugate 7 was always lower than before administration.
  • the animals administered with conjugate 4 or 5 were subjected to intravenous blood sampling.
  • the automatic five-category hematology analyzer (ADVIA 2120/ADVIA 2120i, Siemens, Germany) and the automatic blood coagulation analyzer (CA-7000/CS-2000i, Sysmex Corporation, Japan) were used to test blood routine and coagulation function.
  • the results show that there is no significant difference in the effects of each conjugate on blood routine and coagulation function after administration compared to before administration, showing that the siRNA conjugate provided in the present disclosure has better biological safety.
  • Body weight measure the body weight on D1 before administration, D3, D6, D10, D14 after administration and D15 on the anatomy day;
  • 1.9ml blood was collected from the rat abdominal aorta on D15 before anatomy, of which 1.0ml blood sample was anticoagulated with EDTA-K2, and whole blood was directly injected to detect the following blood cytological indicators (including red blood cell count (RBC) ), white blood cell count (WBC), platelet count (PLT), hemoglobin (HGB), red blood cell volume (HCT), average red blood cell volume (MCV), average red blood cell hemoglobin (MCH), average red blood cell hemoglobin concentration (MCHC), reticulocyte Count (RET), reticulocyte percentage (RET%), neutrophil (NEU) count and percentage, lymphocyte (LYM) count and percentage, monocyte (MONO) count and percentage, eosinophil (EOS) ) Counts and percentages, and basophils (BASO) counts and percentages); the remaining 0.9mL blood sample is anticoagulated with sodium citrate and centrifuged at 1800 ⁇ g at 15 ⁇ 25°C for 10 minutes to separate the
  • Blood biochemistry 0.6ml of blood was collected from the jugular vein of the rat after administration on D2, and 3ml of blood was collected from the rat abdominal aorta before dissection on D15, none of which was anticoagulant. Centrifuge at 1800 ⁇ g for 10 minutes at 15 ⁇ 25°C for separation.
  • Serum is tested for alkaline phosphatase (ALP), alanine aminotransferase (ALT), aspartate aminotransferase (AST), creatine kinase (CK), lactate dehydrogenase (LDH), ⁇ -gluten glutamyl transferase (GGT), urea (urea), creatinine (Crea), the sodium ion concentration (Na +), potassium ion concentration (K +), chloride ion (Cl -), glucose (GLU), total bilirubin (TBIL), total protein (TP), albumin (ALB) and white sphere ratio (A/G) blood biochemical indicators;
  • ALP alkaline phosphatase
  • ALT alanine aminotransferase
  • AST aspartate aminotransferase
  • CK creatine kinase
  • LDH lactate dehydrogenase
  • GGT ⁇ -gluten glutamyl transferase
  • urea ure
  • Body weight Measure body weight before administration on D1, D8, D15 and D16 on the day of anatomy

Abstract

An siRNA which inhibits proprotein convertase subtilisin/kexin type 9 (PCSK9) gene expression, a pharmaceutical composition containing the siRNA, and a conjugate. Each nucleotide in the siRNA is independently a modified or unmodified nucleotide. The siRNA contains a sense strand and an antisense strand. The sense strand contains nucleotide sequence I, nucleotide sequence I having the same length as the nucleotide sequence shown in SEQ ID NO: 1, with no more than three nucleotide differences. The antisense strand contains nucleotide sequence II, nucleotide sequence II having the same length as the nucleotide sequence shown in SEQ ID NO: 2, with no more than three nucleotide differences. The siRNA, the pharmaceutical composition thereof and the conjugate can effectively treat and/or prevent hypercholesterolemia.

Description

核酸、药物组合物与缀合物及制备方法和用途Nucleic acid, pharmaceutical composition and conjugate, preparation method and application 技术领域Technical field
本公开涉及一种能够抑制前蛋白转化酶枯草杆菌蛋白酶/kexin 9型(PCSK9)基因表达的核酸、药物组合物和siRNA缀合物。本公开还涉及该核酸、药物组合物与siRNA缀合物的制备方法和用途。The present disclosure relates to a nucleic acid, a pharmaceutical composition and an siRNA conjugate capable of inhibiting the expression of the proprotein convertase subtilisin/kexin type 9 (PCSK9) gene. The present disclosure also relates to the preparation method and application of the nucleic acid, the pharmaceutical composition and the siRNA conjugate.
背景技术Background technique
血脂异常,尤其是低密度脂蛋白胆固醇(LDL-c)持续偏高是诱发和促进动脉粥样硬化发生、发展的重要危险因素,与缺血性心脑血管疾病密切相关,严重威胁着人类健康。现有的治疗血脂异常的药物主要有他汀类、胆固醇吸收抑制剂、树脂类、普罗步考、贝特类和烟酸及其衍生物。应用降脂药降低血浆胆固醇水平可降低心脑血管疾病的发病风险,但仍有相当比例的患者未达到理想的血脂水平。Dyslipidemia, especially the persistently high low-density lipoprotein cholesterol (LDL-c), is an important risk factor that induces and promotes the occurrence and development of atherosclerosis. It is closely related to ischemic cardiovascular and cerebrovascular diseases and seriously threatens human health. . The existing drugs for treating dyslipidemia mainly include statins, cholesterol absorption inhibitors, resins, probucol, fibrates, niacin and its derivatives. The application of lipid-lowering drugs to lower plasma cholesterol levels can reduce the risk of cardiovascular and cerebrovascular diseases, but a considerable proportion of patients still do not reach the ideal blood lipid level.
研究表明,前蛋白转化酶枯草杆菌蛋白酶/kexin 9型(PCSK9)基因在脂质代谢、特别是胆固醇代谢中具有重要作用。通过抑制PCSK9基因表达,能够有效降低血浆胆固醇水平。小干扰RNA(small interfering RNA,siRNA)可基于RNA干扰(RNA interference,RNAi)这一机制,以序列特异性的方式抑制或阻断感兴趣的目的基因的表达,从而达到治疗疾病的目的。若能从mRNA层面,抑制PCSK9基因表达,无疑将是最为理想的治疗手段。Studies have shown that the proprotein convertase subtilisin/kexin type 9 (PCSK9) gene plays an important role in lipid metabolism, especially cholesterol metabolism. By inhibiting PCSK9 gene expression, plasma cholesterol levels can be effectively reduced. Small interfering RNA (siRNA) can be based on the mechanism of RNA interference (RNAi) to inhibit or block the expression of the target gene of interest in a sequence-specific manner, thereby achieving the purpose of treating diseases. If the expression of PCSK9 gene can be inhibited from the mRNA level, it will undoubtedly be the most ideal treatment.
开发抑制PCSK9基因表达和治疗高胆固醇血症的siRNA药物的关键在于寻找合适的siRNA及其修饰以及有效的递送系统。The key to developing siRNA drugs that inhibit PCSK9 gene expression and treat hypercholesterolemia is to find suitable siRNA and its modification as well as an effective delivery system.
发明内容Summary of the invention
本公开的发明人意外发现,具有本公开提供的如下siRNA缀合物能够特异性地抑制PCSK9基因的表达,并且特异性地靶向肝脏,抑制肝脏中PCSK9基因的表达,实现治疗或预防高胆固醇血症。此外,发明人还发明了具有较高活性的siRNA和药物组合物。The inventor of the present disclosure unexpectedly discovered that the following siRNA conjugates provided in the present disclosure can specifically inhibit the expression of PCSK9 gene, and specifically target the liver, inhibit the expression of PCSK9 gene in the liver, and realize the treatment or prevention of high cholesterol Blood disease. In addition, the inventors have also invented siRNA and pharmaceutical compositions with higher activity.
在一些实施方式中,本公开提供了一种siRNA缀合物,该缀合物具有如式(308)所示的结构:In some embodiments, the present disclosure provides a siRNA conjugate having a structure as shown in formula (308):
Figure PCTCN2020091489-appb-000001
Figure PCTCN2020091489-appb-000001
其中:n1为选自1-3的整数,n3为选自0-4的整数;m1、m2或m3独立地为选自2-10的整数;R 10、R 11、R 12、R 13、R 14或R 15各自独立地为H,或选自于由以下基团所组成的组:C 1-C 10烷基、C 1-C 10卤代烷基以及C 1-C 10烷氧基; Wherein: n1 is an integer selected from 1-3, n3 is an integer selected from 0-4; m1, m2 or m3 are independently an integer selected from 2-10; R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently H, or are selected from the group consisting of C 1 -C 10 alkyl, C 1 -C 10 haloalkyl, and C 1 -C 10 alkoxy;
R 3为式A59所示结构的基团: R 3 is a group represented by the formula A59:
Figure PCTCN2020091489-appb-000002
Figure PCTCN2020091489-appb-000002
其中,E 1为OH、SH或BH 2Wherein, E 1 is OH, SH or BH 2 ;
Nu为siRNA,该siRNA含有正义链和反义链,所述siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,所述核苷酸序列I和所述核苷酸序列II选自如下i)-vi)中的一组:Nu is siRNA, the siRNA contains a sense strand and an antisense strand, each nucleotide in the siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleotide sequence I , The antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, the nucleotide sequence I and the The nucleotide sequence II is selected from the following group i)-vi):
i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列长度相等,且不多于3个核苷酸差异:i) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1 are equal in length, and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 2 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
5'-AAGCAAGCAGACAUUUAUZ 1-3'(SEQ ID NO:1); 5'-AAGCAAGCAGACAUUUAUZ 1 -3' (SEQ ID NO:1);
5'-Z 2AUAAAUGUCUGCUUGCUU-3'(SEQ ID NO:2), 5'-Z 2 AUAAAUGUCUGCUUGCUU-3' (SEQ ID NO: 2),
其中,Z 1为C,Z 2为G,所述核苷酸序列I中包含位置对应于Z 1的核苷酸Z 3,所述核苷酸序列II中包含位置对应于Z 2的核苷酸Z 4,所述Z 4是所述反义链5'末端的第一个核苷酸; Wherein, Z 1 is C, Z 2 is G, the nucleotide sequence I contains a nucleotide Z 3 whose position corresponds to Z 1 , and the nucleotide sequence II contains a nucleoside whose position corresponds to Z 2 Acid Z 4 , where Z 4 is the first nucleotide at the 5'end of the antisense strand;
ii)所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列长度相等,且不多于3个核苷酸差异:ii) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 62 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
5'-UUUGUAGCAUUUUUAUUAZ 5-3'(SEQ ID NO:61); 5'-UUUGUAGCAUUUUUAUUAZ 5 -3' (SEQ ID NO: 61);
5'-Z 6UAAUAAAAAUGCUACAAA-3'(SEQ ID NO:62), 5'-Z 6 UAAUAAAAAUGCUACAAA-3' (SEQ ID NO: 62),
其中,Z 5为A,Z 6为U,所述核苷酸序列I中包含位置对应于Z 5的核苷酸Z 7,所述核苷酸序列II中包含位置对应于Z 6的核苷酸Z 8,所述Z 8是所述反义链5'末端的第一个核苷酸; Wherein, Z 5 is A, Z 6 is U, the nucleotide sequence I contains a nucleotide Z 7 whose position corresponds to Z 5 , and the nucleotide sequence II contains a nucleoside whose position corresponds to Z 6 Acid Z 8 , said Z 8 being the first nucleotide at the 5'end of the antisense strand;
iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列长度相等,且不多于3个核苷酸差异:iii) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121 are the same in length and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 122 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
5'-GCCUGGAGUUUAUUCGGAZ 9-3'(SEQ ID NO:121); 5'-GCCUGGAGUUUAUUCGGAZ 9 -3' (SEQ ID NO: 121);
5'-Z 10UCCGAAUAAACUCCAGGC-3'(SEQ ID NO:122), 5'-Z 10 UCCGAAUAAACUCCAGGC-3' (SEQ ID NO: 122),
其中,Z 9为A,Z 10为U,所述核苷酸序列I中包含位置对应于Z 9的核苷酸Z 11,所述核苷酸序列II中包含位置对应于Z 10的核苷酸Z 12,所述Z 12是所述反义链5'末端的第一个核苷酸; Wherein, Z 9 is A, Z 10 is U, the nucleotide sequence I contains the nucleotide Z 11 whose position corresponds to Z 9 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 10 Acid Z 12 , where Z 12 is the first nucleotide at the 5'end of the antisense strand;
iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列长度相等,且不多于3个核苷酸差异:iv) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 182 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
5'-CUGUUUUGCUUUUGUAACZ 13-3'(SEQ ID NO:181); 5'-CUGUUUUGCUUUUGUAACZ 13 -3' (SEQ ID NO: 181);
5'-Z 14GUUACAAAAGCAAAACAG-3'(SEQ ID NO:182), 5'-Z 14 GUUACAAAAGCAAAACAG-3' (SEQ ID NO: 182),
其中,Z 13为U,Z 14为A,所述核苷酸序列I中包含位置对应于Z 13的核苷酸Z 15,所述核苷酸序列II中包含位置对应于Z 14的核苷酸Z 16,所述Z 16是所述反义链5'末端的第一个核苷酸; Wherein, Z 13 is U, Z 14 is A, the nucleotide sequence I contains the nucleotide Z 15 whose position corresponds to Z 13 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 14 Acid Z 16 , where Z 16 is the first nucleotide at the 5'end of the antisense strand;
v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列长度相等,且不多于3个核苷酸差异:v) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 242 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
5'-GGUUUUGUAGCAUUUUUAZ 17-3'(SEQ ID NO:241); 5'-GGUUUUGUAGCAUUUUUAZ 17 -3' (SEQ ID NO: 241);
5'-Z 18UAAAAAUGCUACAAAACC-3'(SEQ ID NO:242), 5'-Z 18 UAAAAAUGCUACAAAACC-3' (SEQ ID NO: 242),
其中,Z 17为U,Z 18为A,所述核苷酸序列I中包含位置对应于Z 17的核苷酸Z 19,所述核苷酸序列II中包含位置对应于Z 18的核苷酸Z 20,所述Z 20是所述反义链5'末端的第一个核苷酸;并且, Wherein, Z 17 is U, Z 18 is A, the nucleotide sequence I contains the nucleotide Z 19 whose position corresponds to Z 17 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 18 Acid Z 20 , said Z 20 being the first nucleotide at the 5'end of the antisense strand; and,
vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列长度相等,且不多于3个核苷酸差异:vi) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 302 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
5'-GUGACUUUUUAAAAUAAAZ 21-3'(SEQ ID NO:301); 5'-GUGACUUUUUAAAAUAAAZ 21 -3' (SEQ ID NO: 301);
5'-Z 22UUUAUUUUAAAAAGUCAC-3'(SEQ ID NO:302), 5'-Z 22 UUUAUUUUAAAAAGUCAC-3' (SEQ ID NO: 302),
其中,Z 21为A,Z 22为U,所述核苷酸序列I中包含位置对应于Z 21的核苷酸Z 23,所述核苷酸序列II中包含位置对应于Z 22的核苷酸Z 24,所述Z 24是所述反义链5'末端的第一个核苷酸; Wherein, Z 21 is A, Z 22 is U, the nucleotide sequence I contains the nucleotide Z 23 whose position corresponds to Z 21 , and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 22 Acid Z 24 , said Z 24 being the first nucleotide at the 5'end of the antisense strand;
R 2是长度为1-20个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自于以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中,R 2可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、-SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、N(C 1-C 10烷基)(C 1-C 10烷基苯基)、NH(C 1-C 10烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤代烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基); R 2 is a linear alkylene group with a length of 1-20 carbon atoms, wherein one or more carbon atoms are optionally replaced by any one or more selected from the group consisting of: C (O), NH, O, S, CH=N, S(O) 2 , C 2 -C 10 alkenylene, C 2 -C 10 alkynylene, C 6 -C 10 arylene, C 3- C 18 heterocyclylene and C 5 -C 10 heteroarylene; and wherein R 2 may optionally have any one or more substituents in the group consisting of: C 1 -C 10 alkyl, C 6 -C 10 aryl, C 5 -C 10 heteroaryl, C 1 -C 10 haloalkyl, -OC 1 -C 10 alkyl, -OC 1 -C 10 alkylphenyl,- C 1 -C 10 alkyl-OH, -OC 1 -C 10 haloalkyl, -SC 1 -C 10 alkyl, -SC 1 -C 10 alkylphenyl, -C 1 -C 10 alkyl-SH, -SC 1 -C 10 haloalkyl, halogen substituent, -OH, -SH, -NH 2 , -C 1 -C 10 alkyl -NH 2 , -N (C 1 -C 10 alkyl) (C 1- C 10 alkyl), -NH (C 1 -C 10 alkyl), N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl phenyl), NH (C 1 -C 10 alkyl benzene) Group), cyano, nitro, -CO 2 H, -C(O)O (C 1 -C 10 alkyl), -CON (C 1 -C 10 alkyl) (C 1 -C 10 alkyl) , -CONH (C 1 -C 10 alkyl), -CONH 2 , -NHC(O) (C 1 -C 10 alkyl), -NHC(O) (phenyl), -N(C 1 -C 10 Alkyl) C (O) (C 1 -C 10 alkyl), -N (C 1 -C 10 alkyl) C (O) (phenyl), -C (O) C 1 -C 10 alkyl, -C(O)C 1 -C 10 alkylphenyl, -C(O)C 1 -C 10 haloalkyl, -OC(O)C 1 -C 10 alkyl, -SO 2 (C 1 -C 10 Alkyl), -SO 2 (phenyl), -SO 2 (C 1 -C 10 haloalkyl), -SO 2 NH 2 , -SO 2 NH (C 1 -C 10 alkyl), -SO 2 NH ( phenyl), - NHSO 2 (C 1 -C 10 alkyl), - NHSO 2 (phenyl), and -NHSO 2 (C 1 -C 10 haloalkyl);
每个L 1独立地是长度为1-70个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自于以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中,L 1可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、 -SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、N(C 1-C 10烷基)(C 1-C 10烷基苯基)、NH(C 1-C 10烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基); Each L 1 is independently a linear alkylene group with a length of 1 to 70 carbon atoms, wherein one or more carbon atoms are optionally selected from any one or more of the following groups Replacement: C(O), NH, O, S, CH=N, S(O) 2 , C 2 -C 10 alkenylene, C 2 -C 10 alkynylene, C 6 -C 10 arylene , C 3 -C 18 heterocyclylene and C 5 -C 10 heteroarylene; and wherein, L 1 may optionally have any one or more substituents in the group consisting of the following groups: C 1 -C 10 alkyl, C 6 -C 10 aryl, C 5 -C 10 heteroaryl, C 1 -C 10 haloalkyl, -OC 1 -C 10 alkyl, -OC 1 -C 10 alkyl Phenyl, -C 1 -C 10 alkyl-OH, -OC 1 -C 10 haloalkyl, -SC 1 -C 10 alkyl, -SC 1 -C 10 alkylphenyl, -C 1 -C 10 alkane Group -SH, -SC 1 -C 10 haloalkyl, halogen substituent, -OH, -SH, -NH 2 , -C 1 -C 10 alkyl -NH 2 , -N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl), -NH (C 1 -C 10 alkyl), N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl phenyl), NH (C 1 -C 10 alkyl phenyl), cyano, nitro, -CO 2 H, -C (O) O (C 1 -C 10 alkyl), -CON (C 1 -C 10 alkyl) (C 1 -C 10 alkyl), -CONH (C 1 -C 10 alkyl), -CONH 2 , -NHC(O) (C 1 -C 10 alkyl), -NHC(O)(phenyl), -N(C 1 -C 10 alkyl) C (O) (C 1 -C 10 alkyl), -N (C 1 -C 10 alkyl) C (O) (phenyl), -C (O) C 1 -C 10 alkyl, -C(O)C 1 -C 10 alkylphenyl, -C(O)C 1 -C 10 haloalkyl, -OC(O)C 1 -C 10 alkyl, -SO 2 ( C 1 -C 10 alkyl), -SO 2 (phenyl), -SO 2 (C 1 -C 10 haloalkyl), -SO 2 NH 2 , -SO 2 NH (C 1 -C 10 alkyl), -SO 2 NH (phenyl), - NHSO 2 (C 1 -C 10 alkyl), - NHSO 2 (phenyl), and -NHSO 2 (C 1 -C 10 haloalkyl);
Figure PCTCN2020091489-appb-000003
表示基团共价连接的位点;M 1表示靶向基团。
Figure PCTCN2020091489-appb-000003
Represents the site where the group is covalently attached; M 1 represents the targeting group.
在一些实施方式中,本公开提供了一种能够抑制PCSK9基因表达的siRNA,所述siRNA含有正义链和反义链,所述正义链和所述反义链中的每一个核苷酸独立地为氟代修饰的核苷酸或非氟代修饰的核苷酸;所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,并且,按照5'末端到3'末端的方向,在所述正义链中,所述核苷酸序列I的第7、8、9位的核苷酸为氟代修饰的核苷酸,所述正义链中其余位置的核苷酸为非氟代修饰的核苷酸;按照5'末端到3'末端的方向,在所述反义链中,所述核苷酸序列II的第2、6、14、16位的核苷酸为氟代修饰的核苷酸,所述反义链中其余位置的核苷酸为非氟代修饰的核苷酸,并且,所述核苷酸序列I和所述核苷酸序列II选自上述i)-vi)中的一组。In some embodiments, the present disclosure provides an siRNA capable of inhibiting PCSK9 gene expression. The siRNA contains a sense strand and an antisense strand, and each nucleotide in the sense strand and the antisense strand is independently It is a fluorinated modified nucleotide or a non-fluorinated modified nucleotide; the sense strand contains a nucleotide sequence I, the antisense strand contains a nucleotide sequence II, and the nucleotide sequence I And the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, and the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and follow the 5'end to 3 The direction of the end, in the sense strand, the nucleotides at positions 7, 8, and 9 of the nucleotide sequence I are fluorinated modified nucleotides, and the nucleosides at the remaining positions in the sense strand Acid is a non-fluorinated modified nucleotide; in the direction from the 5'end to the 3'end, in the antisense strand, the nucleosides at positions 2, 6, 14, and 16 of the nucleotide sequence II The acid is a fluorinated modified nucleotide, the nucleotides at the remaining positions in the antisense strand are non-fluorinated modified nucleotides, and the nucleotide sequence I and the nucleotide sequence II are selected From one of the above i)-vi).
在一些实施方式中,本公开提供了一种药物组合物,所述药物组合物含有本公开的siRNA和药学上可接受的载体。In some embodiments, the present disclosure provides a pharmaceutical composition containing the siRNA of the present disclosure and a pharmaceutically acceptable carrier.
在一些实施方式中,本公开提供了一种siRNA缀合物,所述siRNA缀合物含有本公开提供的siRNA以及缀合连接至该siRNA的缀合基团。In some embodiments, the present disclosure provides an siRNA conjugate containing the siRNA provided in the present disclosure and a conjugating group conjugated to the siRNA.
在一些实施方式中,本公开提供了本公开的siRNA和/或药物组合物和/或siRNA缀合物在制备用于治疗和/或预防由PCSK9基因异常表达引起的疾病或生理状况的药物中的用途。In some embodiments, the present disclosure provides that the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure are used in the preparation of drugs for the treatment and/or prevention of diseases or physiological conditions caused by abnormal expression of PCSK9 gene the use of.
在一些实施方式中,本公开提供了一种治疗和/或预防由PCSK9基因异常表达引起的疾病或生理状况的方法,该方法包括将有效量的本公开的siRNA和/或药物组合物和/或siRNA缀合物给予有需要的受试者。In some embodiments, the present disclosure provides a method for treating and/or preventing diseases or physiological conditions caused by abnormal expression of the PCSK9 gene, the method comprising applying an effective amount of the siRNA and/or pharmaceutical composition of the present disclosure and/or Or the siRNA conjugate is administered to a subject in need.
在一些实施方式中,本公开提供了一种抑制肝细胞中PCSK9基因表达的方法,该方法包括将有效量的本公开的siRNA和/或药物组合物和/或siRNA缀合物与所述肝细胞接触。In some embodiments, the present disclosure provides a method for inhibiting PCSK9 gene expression in liver cells, the method comprising combining an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure with the liver. Cell contact.
在一些实施方式中,本公开提供了一种试剂盒,所述试剂盒含有本公开的siRNA和/或药物组合物和/或siRNA缀合物。In some embodiments, the present disclosure provides a kit that contains the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure.
有益效果Beneficial effect
本公开提供的siRNA、药物组合物和siRNA缀合物具有良好的稳定性,较高的PCSK9 mRNA抑制活性,较低的脱靶效应及毒性,和/或能显著治疗或预防由PCSK9基因异常表达引起的疾病或生理状况,例如,高胆固醇血症。The siRNA, pharmaceutical composition and siRNA conjugate provided in the present disclosure have good stability, high PCSK9 mRNA inhibitory activity, low off-target effect and toxicity, and/or can significantly treat or prevent the abnormal expression of PCSK9 gene. The disease or physiological condition of the patient, for example, hypercholesterolemia.
在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物在体外细胞实验中显示出优异的靶mRNA抑制活性。在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物在肝细胞中显示出至少20%、30%、40%、50%、60%、70%、80%、90%或95%的靶mRNA抑制率。In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure shows excellent target mRNA inhibitory activity in in vitro cell experiments. In some embodiments, the siRNA, pharmaceutical composition, or siRNA conjugate provided by the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% in liver cells. Or 95% target mRNA inhibition rate.
在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物可在体内具有更高的稳定性和/或更高的活性。在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物在体内显示出至少20%、30%、40%、50%、60%、70%、80%、90%或95%的靶基因表达抑制率。在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物在体内显示出至少20%、30%、40%、50%、60%、70%、80%、90%或95%的PCSK9基因表达抑制率。在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物在体内显示出至少20%、30%、40%、50%、60%、70%、80%、90%或95%的肝内PCSK9基因表达抑制率。在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物在体内显示出至少20%、30%、40%、50%、60%、70%、80%、90%或95%的动物模型中肝内PCSK9基因表达抑制率。在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物在体内显示出至少20%、30%、40%、50%、60%、70%、80%、90%或95%的人类受试者中肝内PCSK9基因表达抑制率。在一些实施方式中,本公开提供的siRNA、药物组合物或siRNA缀合物未显示出明显脱靶效应。脱靶效应可以是例如抑制非靶基因的基因正常表达。据认为,如果脱靶基因表达的结合/抑制与在靶基因效果相比低于50%、40%、30%、20%或10%时,该脱靶效应就是不显著的。In some embodiments, the siRNA, pharmaceutical composition, or siRNA conjugate provided in the present disclosure may have higher stability and/or higher activity in vivo. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of target gene expression. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % PCSK9 gene expression inhibition rate. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of PCSK9 gene expression in the liver. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of PCSK9 gene expression in liver in animal models. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. Inhibition rate of PCSK9 gene expression in the liver in% of human subjects. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure does not show significant off-target effects. Off-target effects may be, for example, suppression of normal expression of genes other than target genes. It is believed that if the binding/inhibition of off-target gene expression is less than 50%, 40%, 30%, 20%, or 10% compared to the target gene effect, the off-target effect is not significant.
在一些实施方式中,本公开提供的siRNA在psiCHECK系统中显示出较高的抑制活性,对目标序列的IC 50在0.0194-0.0561nM之间。在一些实施方式中,本公开提供的siRNA缀合物经皮下单次注射食蟹猴,9mg/kg的剂量下,相对于给药前第7天,给药后第15天对NHP肝组织 PCSK9 mRNA的抑制率达56-81%。在一些实施方式中,本公开提供的siRNA缀合物对血清中PCSK9蛋白表达的抑制更为显著,给药后第14天血清中PCSK9蛋白表达的抑制率可达90%以上。在一些实施方式中,本公开提供的siRNA缀合物能够显著抑制血清LDL-c和CHO水平,尤其在给药后第14天至第29天期间,对LDL-c的抑制率可高达30%以上,甚至高达64%;对CHO也有较高的抑制率,甚至可高达35%以上。在一些实施方式中,本公开提供的siRNA缀合物单次给药9mg/kg的剂量,对高于50%LDL-c抑制率可维持11周之久,并且本公开提供的siRNA缀合物在大鼠、小鼠中均未发现明显的毒性。综上,本公开提供的siRNA缀合物起效快,作用时间长,抑制靶mRNA表达显著,能够有效降低血清中PCSK9蛋白含量,对血清中LDL-c和CHO有强烈的抑制作用,且生物安全性能良好。 In some embodiments, the present disclosure provides siRNA exhibited high inhibitory activity psiCHECK system, the target sequence between the IC 50 0.0194-0.0561nM. In some embodiments, the siRNA conjugate provided in the present disclosure is injected subcutaneously into a single injection of cynomolgus monkeys, at a dose of 9 mg/kg, relative to the 7th day before administration, and the NHP liver tissue PCSK9 on the 15th day after administration. The inhibition rate of mRNA is 56-81%. In some embodiments, the siRNA conjugate provided in the present disclosure inhibits PCSK9 protein expression in serum more significantly, and the inhibition rate of PCSK9 protein expression in serum can reach more than 90% on the 14th day after administration. In some embodiments, the siRNA conjugate provided in the present disclosure can significantly inhibit serum LDL-c and CHO levels, especially during the 14th day to the 29th day after administration, the inhibition rate of LDL-c can be as high as 30% Above, even as high as 64%; it also has a higher inhibition rate for CHO, even as high as 35%. In some embodiments, a single administration of the siRNA conjugate provided in the present disclosure at a dose of 9 mg/kg can maintain an LDL-c inhibition rate higher than 50% for 11 weeks. No obvious toxicity was found in rats and mice. In summary, the siRNA conjugate provided by the present disclosure has a fast onset of action, a long time of action, significant inhibition of target mRNA expression, can effectively reduce the content of PCSK9 protein in serum, has a strong inhibitory effect on LDL-c and CHO in serum, and has a biological Safety performance is good.
由此说明,本公开提供的siRNA、药物组合物以及siRNA缀合物能够抑制PCSK9基因的表达,有效治疗和/或预防由PCSK9基因异常表达引起的疾病或生理状况,具有良好的应用前景。This shows that the siRNA, pharmaceutical composition and siRNA conjugate provided in the present disclosure can inhibit the expression of PCSK9 gene, effectively treat and/or prevent diseases or physiological conditions caused by abnormal expression of PCSK9 gene, and have good application prospects.
本公开的其他特征和优点将在随后的具体实施方式部分予以详细说明。Other features and advantages of the present disclosure will be described in detail in the following specific embodiments.
附图说明Description of the drawings
图1A-1F依次为依据转染了不同的siRNA(siRNA 1-6)后,psiCHECK系统中报告基因Renilla的相对残留活性而拟合的剂量-效应曲线。Figures 1A-1F are the dose-effect curves fitted according to the relative residual activity of the reporter gene Renilla in the psiCHECK system after transfection of different siRNAs (siRNA 1-6).
图2为对食蟹猴单次皮下注射9mg/kg的缀合物1、4或7后,不同时间点下的血清中标准化的PCSK9蛋白水平图。Figure 2 is a graph of normalized PCSK9 protein levels in serum at different time points after a single subcutaneous injection of 9 mg/kg of conjugate 1, 4 or 7 in cynomolgus monkeys.
图3为分别对食蟹猴单次皮下注射9mg/kg的缀合物4或7后,不同时间点下的血清中标准化的LDL-c水平图。Figure 3 is a graph showing normalized LDL-c levels in serum at different time points after a single subcutaneous injection of 9 mg/kg of conjugate 4 or 7 in cynomolgus monkeys.
图4为分别对食蟹猴单次皮下注射9mg/kg的缀合物4或7后,不同时间点下的血清中标准化的CHO水平图。Figure 4 is a graph of normalized CHO levels in serum at different time points after a single subcutaneous injection of 9 mg/kg of conjugate 4 or 7 in cynomolgus monkeys.
具体实施方式Detailed ways
以下对本公开的具体实施方式进行详细说明。应当理解的是,此处所描述的具体实施方式仅用于说明和解释本公开,并不用于限制本公开。The specific embodiments of the present disclosure will be described in detail below. It should be understood that the specific embodiments described here are only used to illustrate and explain the present disclosure, and are not used to limit the present disclosure.
在本公开中,PCSK9 mRNA是指具有Genbank注册号为NM_174936.3所示序列的mRNA。进一步地,若无其它说明,本公开中所使用的术语“靶基因”是指能转录出上述PCSK9 mRNA的基因,术语“靶mRNA”是指上述PCSK9 mRNA。In this disclosure, PCSK9 mRNA refers to mRNA with the sequence shown in Genbank registration number NM_174936.3. Further, unless otherwise stated, the term "target gene" used in the present disclosure refers to a gene capable of transcribing the aforementioned PCSK9 mRNA, and the term "target mRNA" refers to the aforementioned PCSK9 mRNA.
定义definition
在上文及下文中,如无特别说明,大写字母C、G、U、A、T表示核苷酸的碱基组成;小写字母m表示该字母m左侧相邻的一个核苷酸为甲氧基修饰的核苷酸;小写字母f表示该字母f左侧相邻的一个核苷酸为氟代修饰的核苷酸;小写字母s表示与该字母s左右相邻的两个核苷酸之间为硫代磷酸酯基连接;P1表示该P1右侧相邻的一个核苷酸为5'-磷酸核苷酸或5'-磷酸类似物修饰的核苷酸,字母组合VP表示该字母组合VP右侧相邻的一个核苷酸为乙烯基磷酸酯修饰的核苷酸,字母组合Ps表示该字母组合Ps右侧相邻的一个核苷酸为硫代磷酸酯修饰的核苷酸,大写字母P表示该字母P右侧相邻的一个核苷酸为5'-磷酸核苷酸。In the above and below, unless otherwise specified, the capital letters C, G, U, A, T represent the base composition of nucleotides; the lowercase letter m represents that the adjacent nucleotide to the left of the letter m is a Oxy-modified nucleotides; lowercase letter f indicates that the adjacent nucleotide to the left of the letter f is a fluoro-modified nucleotide; lowercase letter s indicates the two adjacent nucleotides to the left and right of the letter s Between them is the phosphorothioate group connection; P1 indicates that the adjacent nucleotide to the right of P1 is a 5'-phosphate nucleotide or a nucleotide modified by a 5'-phosphate analogue, and the letter combination VP represents the letter The adjacent nucleotide on the right side of the combination VP is a nucleotide modified by vinyl phosphate, and the letter combination Ps indicates that the adjacent nucleotide on the right side of the letter combination Ps is a nucleotide modified by phosphorothioate. The capital letter P indicates that the nucleotide adjacent to the right side of the letter P is a 5'-phosphate nucleotide.
在上文及下文中,所述“氟代修饰的核苷酸”指核苷酸的核糖基2'位的羟基被氟取代形成的核苷酸,“非氟代修饰的核苷酸”指核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸或核苷酸类似物。“核苷酸类似物”指能够在核酸中代替核苷酸,但结构不同于腺嘌呤核糖核苷酸、鸟嘌呤核糖核苷酸、胞嘧啶核糖核苷酸、尿嘧啶核糖核苷酸或胸腺嘧啶脱氧核糖核苷酸的基团。如异核苷酸、桥联的核苷酸(bridged nucleic acid,简称BNA)或无环核苷酸。所述“甲氧基修饰的核苷酸”指核糖基的2'-羟基被甲氧基取代而形成的核苷酸。In the above and below, the "fluoro-modified nucleotide" refers to a nucleotide in which the hydroxyl group at the 2'position of the ribose group of the nucleotide is replaced by fluorine, and the "non-fluoro-modified nucleotide" refers to Nucleotides or nucleotide analogs formed by substituting a non-fluorine group for the hydroxyl group at the 2'position of the ribose group of a nucleotide. "Nucleotide analogue" refers to a nucleic acid that can replace nucleotides, but has a structure different from adenine ribonucleotides, guanine ribonucleotides, cytosine ribonucleotides, uracil ribonucleotides or thymus The group of pyrimidine deoxyribonucleotides. Such as heteronucleotide, bridged nucleotide (BNA) or acyclic nucleotide. The "methoxy-modified nucleotide" refers to a nucleotide formed by replacing the 2'-hydroxyl group of the ribose group with a methoxy group.
在本文的上下文中,表述“互补”或“反向互补”可互相替代使用,并具有本领域技术人员周知的含义,即,在双链核酸分子中,一条链的碱基各自与另一条链上的碱基以互补的方式相配对。在DNA中,嘌呤碱基腺嘌呤(A)始终与嘧啶碱基胸腺嘧啶(T)(或者在RNA中为尿嘧啶(U))相配对;嘌呤碱基鸟嘌呤(C)始终与嘧啶碱基胞嘧啶(G)相配对。每个碱基对都包括一个嘌呤和一个嘧啶。当一条链上的腺嘌呤始终与另一条链上的胸腺嘧啶(或尿嘧啶)配对,以及鸟嘌呤始终与胞嘧啶配对时,两条链被认为是彼此相互补的,以及从其互补链的序列中可以推断出该链的序列。与此相应地,“错配”在本领域中意指在双链核酸中,对应位置上的碱基并未以互补的形式配对存在。In the context of this article, the expressions "complementary" or "reverse complement" can be used interchangeably, and have the meaning well known to those skilled in the art, that is, in a double-stranded nucleic acid molecule, the bases of one strand are connected to the other strand. The bases on are paired in a complementary manner. In DNA, the purine base adenine (A) is always paired with the pyrimidine base thymine (T) (or uracil (U) in RNA); the purine base guanine (C) is always paired with the pyrimidine base Cytosine (G) matches. Each base pair includes a purine and a pyrimidine. When adenine on one chain is always paired with thymine (or uracil) on the other chain, and guanine is always paired with cytosine, the two chains are considered to be complementary to each other, and from their complementary chain The sequence of the chain can be inferred from the sequence. Correspondingly, "mismatch" in the art means that in a double-stranded nucleic acid, bases at corresponding positions are not paired in a complementary manner.
在上文及下文中,如无特别说明,“基本上反向互补”是指所涉及的两段核苷酸序列之间存在不多于3个的碱基错配;“实质上反向互补”是指两段核苷酸序列之间存在不多于1个的碱基错配;“完全反向互补”是指两段核苷酸序列之间不存在碱基错配。In the above and below, unless otherwise specified, "substantially reverse complementary" means that there are no more than 3 base mismatches between the two nucleotide sequences involved; "substantially reverse complementary" "Means that there is no more than one base mismatch between two nucleotide sequences; "complete reverse complement" means that there is no base mismatch between two nucleotide sequences.
在上文及下文中,一个核苷酸序列与另外一个核苷酸序列存在“核苷酸差异”,是指前者与后者相比,相同位置的核苷酸的碱基种类发生了改变,例如,在后者中一个核苷酸碱基为A时,在前者的相同位置处的对应核苷酸碱基为U、C、G或者T的情况下,认定为两个核苷酸序列之间 在该位置处存在核苷酸差异。在一些实施方式中,以无碱基核苷酸或其等同物代替原位置的核苷酸时,也可认为在该位置处产生了核苷酸差异。In the above and below, the "nucleotide difference" between one nucleotide sequence and another nucleotide sequence means that the base type of the nucleotide at the same position has changed compared with the latter. For example, when one nucleotide base in the latter is A, when the corresponding nucleotide base at the same position in the former is U, C, G, or T, it is regarded as one of the two nucleotide sequences There is a nucleotide difference at this position. In some embodiments, when an abasic nucleotide or its equivalent is substituted for the nucleotide at the original position, it can also be considered that there is a nucleotide difference at that position.
在上文及下文中,特别是在描述本公开的siRNA、药物组合物或siRNA缀合物的制备方法时,除非特别说明,所述核苷单体(nucleoside monomer)指,根据欲制备的siRNA或siRNA缀合物中核苷酸的种类和顺序,亚磷酰胺固相合成中使用的修饰或未修饰的核苷亚磷酰胺单体(unmodified or modified RNA phosphoramidites,有时RNA phosphoramidites也称为Nucleoside phosphoramidites)。亚磷酰胺固相合成为本领域技术人员所公知的RNA合成中所用的方法。本公开所用的核苷单体均可商购得到。In the above and below, especially when describing the preparation method of the siRNA, pharmaceutical composition or siRNA conjugate of the present disclosure, unless otherwise specified, the nucleoside monomer refers to the siRNA to be prepared Or the type and sequence of nucleotides in siRNA conjugates, modified or unmodified nucleoside phosphoramidite monomers used in phosphoramidite solid phase synthesis (unmodified or modified RNA phosphoramidites, sometimes RNA phosphoramidites are also called Nucleoside phosphoramidites) . Phosphoramidite solid phase synthesis is a method used in RNA synthesis well known to those skilled in the art. The nucleoside monomers used in the present disclosure are all commercially available.
在本公开的上下文中,除非另有说明,“缀合”是指两个或多个各自具有特定功能的化学部分之间以共价连接的方式彼此连接;相应地,“缀合物”是指该各个化学部分之间通过共价连接而形成的化合物。进一步地,“siRNA缀合物”表示一个或多个具有特定功能的化学部分共价连接至siRNA上而形成的化合物。在下文中,有时也将本公开的siRNA缀合物简称为“缀合物”。siRNA缀合物应根据上下文,理解为多个siRNA缀合物的总称或者某个化学式所示的siRNA缀合物。在本公开的上下文中,“缀合分子”应当理解为可通过反应缀合至siRNA,最终形成本公开的siRNA缀合物的特定化合物。In the context of the present disclosure, unless otherwise specified, "conjugate" means that two or more chemical moieties each having a specific function are connected to each other in a covalent manner; correspondingly, "conjugate" is Refers to the compound formed by covalent linkage between the various chemical parts. Further, "siRNA conjugate" refers to a compound formed by covalently linking one or more chemical moieties with specific functions to siRNA. Hereinafter, sometimes the siRNA conjugate of the present disclosure is also referred to simply as "conjugate". An siRNA conjugate should be understood as a general term for multiple siRNA conjugates or an siRNA conjugate represented by a certain chemical formula according to the context. In the context of the present disclosure, "conjugated molecule" should be understood as a specific compound that can be conjugated to siRNA through a reaction, and finally form the siRNA conjugate of the present disclosure.
如本文所使用的,“任选的”或“任选地”是指其后描述的事件或状况可以发生或不发生,并且该描述包括事件或状况发生的情况和不发生的情况。例如,“任选地取代”的“烷基”包括下文定义的“烷基”和“取代烷基”。本领域技术人员将理解的是,对于包含一个或多个取代基的任何基团,这些基团不打算引入空间上不切实际、合成上不可行和/或本身不稳定的任何取代或取代模式。As used herein, "optional" or "optionally" means that the event or condition described thereafter can occur or not occur, and the description includes the situation where the event or situation occurs and the situation where it does not occur. For example, "optionally substituted" "alkyl" includes "alkyl" and "substituted alkyl" defined below. Those skilled in the art will understand that for any group containing one or more substituents, these groups are not intended to introduce any substitution or substitution pattern that is sterically impractical, synthetically impractical, and/or inherently unstable .
如本文所使用的,“烷基”是指具有指定数量的碳原子的直链和支链,所述数量通常为1至20个碳原子,例如1至10个碳原子,如1至8个或1至6个碳原子。例如,C 1-C 6烷基包含1至6个碳原子的直链和支链烷基。当提及具有特定数量的碳的烷基残基时,旨在涵盖具有该数量的碳的所有支链和直链形式;因此,例如,“丁基”意味着包括正丁基、仲丁基、异丁基和叔丁基;“丙基”包括正丙基和异丙基。亚烷基是烷基的子集,指与烷基相同、但具有两个连接点的残基。 As used herein, "alkyl" refers to straight and branched chains having a specified number of carbon atoms, the number is usually 1 to 20 carbon atoms, such as 1 to 10 carbon atoms, such as 1 to 8 Or 1 to 6 carbon atoms. For example, C 1 -C 6 alkyl groups include straight and branched chain alkyl groups of 1 to 6 carbon atoms. When referring to an alkyl residue having a specific number of carbons, it is intended to cover all branched and straight chain forms having that number of carbons; therefore, for example, "butyl" means including n-butyl, sec-butyl , Isobutyl and tert-butyl; "propyl" includes n-propyl and isopropyl. Alkylene is a subset of alkyl and refers to residues that are the same as alkyl but have two points of attachment.
如本文所使用的,“烯基”是指具有至少一个碳-碳双键的不饱和支链或直链烷基,所述碳-碳双键是通过从母体烷基的相邻碳原子中除去一分子氢而获得的。该基团可以处于双键的顺式或反式构型。典型的烯基基团包括但不限于:乙烯基;丙烯基,如丙-1-烯-1-基、丙-1-烯-2-基、丙-2-烯-1-基(烯丙基)、丙-2-烯-2-基;丁烯基,例如丁-1-烯-1-基、丁-1-烯-2-基、2-甲基丙-1-烯-1-基、丁-2-烯-1-基、丁-2-烯-2-基、丁-1,3-二烯-1-基、丁-1,3-二烯-2-基等等。在某些实施方式中,烯基基团具有2到20个碳原子,而在其他实施方式中,具有2至10个、2至8个或2至6个碳原子。亚烯基是烯基的一个子集,指与烯基相同、但具有两个连接点的残基。As used herein, "alkenyl" refers to an unsaturated branched or unbranched alkyl group having at least one carbon-carbon double bond, which is obtained from adjacent carbon atoms of the parent alkyl group. Obtained by removing one molecule of hydrogen. The group can be in the cis or trans configuration of the double bond. Typical alkenyl groups include but are not limited to: vinyl; propenyl, such as prop-1-en-1-yl, prop-1-en-2-yl, prop-2-en-1-yl (allyl Group), prop-2-en-2-yl; butenyl, such as but-1-en-1-yl, but-1-en-2-yl, 2-methylprop-1-ene-1- But-2-en-1-yl, but-2-en-2-yl, but-1,3-dien-1-yl, but-1,3-dien-2-yl, etc. In certain embodiments, alkenyl groups have 2 to 20 carbon atoms, while in other embodiments, 2 to 10, 2 to 8, or 2 to 6 carbon atoms. Alkenylene is a subset of alkenyl and refers to the same residue as alkenyl but with two points of attachment.
如本文所使用的,“炔基”是指具有至少一个碳-碳三键的不饱和支链或直链烷基,所述碳-碳三键是通过从母体烷基的相邻碳原子中除去两分子氢而获得的。典型的炔基基团包括但不限于:乙炔基;丙炔基,如丙-1-炔-1-基,丙-2-炔-1-基;丁炔基,例如丁-1-炔-1-基,丁-1-炔-3-基,丁-3-炔-1-基等。在某些实施方式中,炔基具有2到20个碳原子,而在其他实施方式中,具有2至10、2至8或2至6个碳原子。亚炔基是炔基的一个子集,指的是与炔基相同、但有两个连接点的残基。As used herein, "alkynyl" refers to an unsaturated branched or unbranched alkyl group having at least one carbon-carbon triple bond, which is obtained from adjacent carbon atoms of the parent alkyl group. Obtained by removing two molecules of hydrogen. Typical alkynyl groups include but are not limited to: ethynyl; propynyl, such as prop-1-yn-1-yl, prop-2-yn-1-yl; butynyl, such as but-1-yn- 1-yl, but-1-yn-3-yl, but-3-yn-1-yl, etc. In certain embodiments, the alkynyl group has 2 to 20 carbon atoms, and in other embodiments, 2 to 10, 2 to 8, or 2 to 6 carbon atoms. Alkynylene is a subset of alkynyl and refers to residues that are the same as alkynyl but have two points of attachment.
如本文所使用的,“烷氧基”是指通过氧桥连接的指定数量碳原子的烷基,例如,甲氧基、乙氧基、丙氧基、异丙氧基、正丁氧基、仲丁氧基、叔丁氧基、戊氧基、2-戊氧基、异戊氧基、新戊氧基、己氧基、2-己氧基、3-己氧基、3-甲基戊氧基等。烷氧基通常具有1至10个、1至8个、1至6个,或1至4个通过氧桥连接的碳原子。As used herein, "alkoxy" refers to an alkyl group with a specified number of carbon atoms connected through an oxygen bridge, for example, methoxy, ethoxy, propoxy, isopropoxy, n-butoxy, S-butoxy, tert-butoxy, pentyloxy, 2-pentyloxy, isopentyloxy, neopentyloxy, hexyloxy, 2-hexyloxy, 3-hexyloxy, 3-methyl Pentyloxy and so on. Alkoxy groups generally have 1 to 10, 1 to 8, 1 to 6, or 1 to 4 carbon atoms connected by oxygen bridges.
如本文所使用的,“芳基”是指通过从环碳原子中除去氢原子而衍生自芳香族单环或多环烃环系统形成的基团。所述芳香族单环或多环烃环系统仅含有氢原子和6至18个碳原子,其中所述环系统中的至少一个环是完全不饱和的,即,包含根据Hückel理论的环状、离域的(4n+2)π-电子体系。芳基包括但不限于苯基、芴基和萘基等基团。亚芳基是芳基的子集,指与芳基相同、但具有两个连接点的残基。As used herein, "aryl" refers to a group derived from an aromatic monocyclic or polycyclic hydrocarbon ring system by removing hydrogen atoms from ring carbon atoms. The aromatic monocyclic or polycyclic hydrocarbon ring system contains only hydrogen atoms and 6 to 18 carbon atoms, wherein at least one ring in the ring system is completely unsaturated, that is, contains a ring according to Hückel's theory, Delocalized (4n+2)π-electron system. Aryl groups include, but are not limited to, phenyl, fluorenyl, and naphthyl groups. Arylene is a subset of aryl and refers to residues that are the same as aryl but have two points of attachment.
如本文所使用的,“卤素取代基”或“卤素”指氟代、氯代、溴代或碘代,术语“卤素”包括氟、氯、溴或碘。As used herein, "halogen substituent" or "halogen" refers to fluoro, chloro, bromo or iodo, and the term "halogen" includes fluoro, chloro, bromo or iodo.
如本文所使用的,“卤代烷基”是指指定数量的碳原子被一个或多个、直至最大允许数量的卤素原子取代的如上述所定义的烷基。卤代烷基的实例包括但不限于三氟甲基、二氟甲基、2-氟乙基或五氟乙基。As used herein, "haloalkyl" refers to an alkyl group as defined above in which the specified number of carbon atoms is replaced by one or more halogen atoms up to the maximum allowable number. Examples of haloalkyl include, but are not limited to, trifluoromethyl, difluoromethyl, 2-fluoroethyl, or pentafluoroethyl.
“杂环基”是指稳定的3-至18-元非芳香族环基,包含2-12个碳原子和1-6个杂原子,所述杂原子选自氮、氧或硫。除非说明书中另有说明,杂环基是单环、双环、三环或四环系统,可包括稠环或桥环系统。杂环基中的杂原子可以任选地被氧化。一个或多个氮原子(如果存在的话)任选地被季铵化。杂环基是部分饱和或完全饱和的。杂环基可以通过任何环原子连接至分子的其余 部分。此类杂环基的实例包括但不限于:二噁烷基、噻吩基[1,3]二硫酰基(thienyl[1,3]dithianyl)、十氢异喹啉基、咪唑啉基、咪唑烷基、异噻唑烷基、异噁唑烷基、吗啉基、八氢吲哚基、八氢异吲哚基、2-氧杂哌嗪基、2-氧杂哌啶基、2-氧杂吡咯烷基、噁唑烷基、哌啶基、哌嗪基、4-哌啶酮基、吡咯烷基、吡唑烷基、奎宁环基、噻唑烷基、四氢呋喃基、三硫酰基(trithianyl)、四氢吡喃基、硫代吗啉基(thiomorpholinyl)、硫杂吗啉基(thiamorpholinyl)、1-氧代硫吗啉基(1-oxo-thiomorpholinyl)和1,1-二氧代硫吗啉基(1,1-dioxo-thiomorpholinyl)。"Heterocyclyl" refers to a stable 3- to 18-membered non-aromatic cyclic group containing 2-12 carbon atoms and 1-6 heteroatoms selected from nitrogen, oxygen or sulfur. Unless otherwise specified in the specification, heterocyclic groups are monocyclic, bicyclic, tricyclic, or tetracyclic ring systems, and may include fused or bridged ring systems. The heteroatoms in the heterocyclic group may be optionally oxidized. One or more nitrogen atoms (if present) are optionally quaternized. The heterocyclic group is partially saturated or fully saturated. The heterocyclic group can be attached to the rest of the molecule through any ring atom. Examples of such heterocyclic groups include, but are not limited to: dioxanyl, thienyl[1,3]dithianyl (thienyl[1,3]dithianyl), decahydroisoquinolinyl, imidazolinyl, imidazolidine Group, isothiazolidinyl, isoxazolidinyl, morpholinyl, octahydroindolyl, octahydroisoindolyl, 2-oxapiperazinyl, 2-oxapiperidinyl, 2-oxa Pyrrolidinyl, oxazolidinyl, piperidinyl, piperazinyl, 4-piperidinone, pyrrolidinyl, pyrazolidinyl, quinuclidinyl, thiazolidinyl, tetrahydrofuranyl, trithianyl (trithianyl) ), tetrahydropyranyl, thiomorpholinyl, thiamorpholinyl, 1-oxo-thiomorpholinyl and 1,1-dioxothio Morpholinyl (1,1-dioxo-thiomorpholinyl).
“杂芳基”指由3-至18-元芳香环自由基衍生而成的基团,包含2个至17个碳原子和选自氮、氧和硫的1至6个杂原子。如本文所使用的,杂芳基可以是单环、双环、三环或四环系统,其中环系统中的至少一个环是完全不饱和的,即,包含根据Hückel理论的环状离域(4n+2)π-电子体系。杂芳基包括稠环或桥环系统。杂芳基中的杂原子被任选地氧化。一个或多个氮原子(如果存在的话)任选地被季铵化。杂芳基通过任何环原子连接至分子的其余部分。杂芳基的实例包括但不限于:氮杂环庚三烯基、吖啶基、苯并咪唑基、苯并吲哚基、1,3-苯并二噁唑基、苯并呋喃基、苯并噁唑基、苯并[d]噻唑基、苯并噻二唑基、苯并[b][1,4]二噁庚英基(benzo[b][1,4]dioxepinyl)、苯并[b][1,4]噁嗪基(benzo[b][1,4]oxazinyl)、1,4-苯并二噁烷基(1,4-benzodioxanyl)、苯并萘并呋喃基、苯并噁唑基、苯并间二氧杂环戊烯基(benzodioxolyl)、苯并二噁英基(benzodioxinyl)、苯并吡喃基、苯并吡喃酮基、苯并呋喃基、苯并呋喃酮基、苯并噻吩基、苯并噻吩并[3,2-d]嘧啶基、苯并三唑基、苯并[4,6]咪唑并[1,2-a]吡啶基、咔唑基、噌啉基(cinnolinyl)、环戊烷并[d]嘧啶基、6,7-二氢-5H-环戊烷并[4,5]噻吩并[2,3-d]嘧啶基、5,6-二氢苯并[h]喹唑啉基(5,6-dihydrobenzo[h]quinazolinyl)、5,6-二氢苯并[h]噌啉基(5,6dihydrobenzo[h]cinnolinyl)、6,7-二氢-5H-苯并[6,7]环庚烷并[1,2-c]哒嗪基、二苯并呋喃基、二苯并噻吩基、呋喃基、呋喃酮基、呋喃并[3,2-c]吡啶基、5,6,7,8,9,10-六氢环辛烷并[d]嘧啶基、5,6,7,8,9,10-六氢环辛烷并[d]哒嗪基、5,6,7,8,9,10-六氢环辛烷并[d]吡啶基、异噻唑基、咪唑基、吲唑基(indazolyl)、吲哚基、异吲哚基、二氢吲哚基、异二氢吲哚基、异喹啉基、吲哚嗪基(indolizinyl)、异噁唑基、5,8-甲醇-5,6,7,8-四氢喹唑啉基(5,8-methano-5,6,7,8-tetrahydroquinazolinyl)、萘啶基(naphthyridinyl)、1,6-萘啶酮基(1,6-naphthyridinonyl)、噁二唑基、2-氧杂吖庚因基(2-oxoazepinyl)、噁唑基、氧杂环丙烷基(oxiranyl)、5,6,6a,7,8,9,10,10a-八氢苯并[H]喹唑啉基、1-苯基-1H-吡咯基、吩嗪基、吩噻嗪基、吩噁嗪基、酞嗪基(phthalazinyl)、蝶啶基(pteridinyl)、嘌呤基、吡咯基、吡唑基、吡唑并[3,4-d]嘧啶基、吡啶基、吡啶并[3,2-d]嘧啶基、吡啶并[3,4-d]嘧啶基、吡嗪基、嘧啶基、哒嗪基、喹唑啉基、喹喔啉基(quinoxalinyl)、喹啉基、四氢喹啉基、5,6,7,8-四氢喹唑啉基、5,6,7,8-四氢苯并[4,5]噻吩并[2,3-d]嘧啶基、6,7,8,9-四氢-5H-环庚烷并[4,5]噻吩并[2,3-d]嘧啶基、5,6,7,8-四氢吡啶并[4,5-c]哒嗪基、噻唑基、噻二唑基、三唑基、四唑基、三嗪基、噻吩并[2,3-d]嘧啶基、噻吩并[3,2-d]嘧啶基、噻吩并[2,3-c]吡啶基(thieno[2,3-c]pridinyl)和噻吩基(thiophenyl/thienyl)。"Heteroaryl" refers to a group derived from a 3- to 18-membered aromatic ring radical, containing 2 to 17 carbon atoms and 1 to 6 heteroatoms selected from nitrogen, oxygen and sulfur. As used herein, a heteroaryl group can be a monocyclic, bicyclic, tricyclic or tetracyclic ring system, wherein at least one ring in the ring system is fully unsaturated, that is, contains a cyclic delocalization according to Hückel's theory (4n +2) π-electron system. Heteroaryl groups include fused or bridged ring systems. The heteroatoms in the heteroaryl group are optionally oxidized. One or more nitrogen atoms (if present) are optionally quaternized. The heteroaryl group is attached to the rest of the molecule through any ring atom. Examples of heteroaryl groups include, but are not limited to: azepinyl, acridinyl, benzimidazolyl, benzindolyl, 1,3-benzodiaxazolyl, benzofuranyl, benzene Oxazolyl, benzo[d]thiazolyl, benzothiadiazolyl, benzo[b][1,4]dioxepinyl (benzo[b][1,4]dioxepinyl), benzo[ b][1,4]oxazinyl (benzo[b][1,4]oxazinyl), 1,4-benzodioxanyl (1,4-benzodioxanyl), benzonaphthofuranyl, benzo Oxazolyl, benzodioxolyl, benzodioxinyl, benzopyranyl, benzopyranone, benzofuranyl, benzofuranone , Benzothienyl, benzothieno[3,2-d]pyrimidinyl, benzotriazolyl, benzo[4,6]imidazo[1,2-a]pyridyl, carbazolyl, pyridyl Cinnolinyl, cyclopenta[d]pyrimidinyl, 6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidinyl, 5,6- Dihydrobenzo[h]quinazolinyl (5,6-dihydrobenzo[h]quinazolinyl), 5,6-dihydrobenzo[h]cinnolinyl (5,6dihydrobenzo[h]cinnolinyl), 6,7 -Dihydro-5H-benzo[6,7]cycloheptano[1,2-c]pyridazinyl, dibenzofuranyl, dibenzothienyl, furanyl, furanonyl, furo[ 3,2-c]pyridyl, 5,6,7,8,9,10-hexahydrocyclooctano[d]pyrimidinyl, 5,6,7,8,9,10-hexahydrocyclooctane And[d]pyridazinyl, 5,6,7,8,9,10-hexahydrocyclooctano[d]pyridinyl, isothiazolyl, imidazolyl, indazolyl, indolyl, Isoindolyl, indoline, isoindoline, isoquinolinyl, indolizinyl, isoxazolyl, 5,8-methanol-5,6,7,8- Tetrahydroquinazolinyl (5,8-methano-5,6,7,8-tetrahydroquinazolinyl), naphthyridinyl, 1,6-naphthyridinonyl, oxadiazole Group, 2-oxoazepinyl (2-oxoazepinyl), oxazolyl, oxiranyl, 5,6,6a,7,8,9,10,10a-octahydrobenzo[ H)quinazolinyl, 1-phenyl-1H-pyrrolyl, phenazinyl, phenothiazinyl, phenoxazinyl, phthalazinyl, pteridinyl, purinyl, pyrrolyl , Pyrazolyl, pyrazolo[3,4-d]pyrimidinyl, pyridyl, pyrido[3,2-d]pyridine Iridinyl, pyrido[3,4-d]pyrimidinyl, pyrazinyl, pyrimidinyl, pyridazinyl, quinazolinyl, quinoxalinyl, quinolinyl, tetrahydroquinolinyl, 5 ,6,7,8-tetrahydroquinazolinyl, 5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidinyl, 6,7,8,9 -Tetrahydro-5H-cycloheptano[4,5]thieno[2,3-d]pyrimidinyl, 5,6,7,8-tetrahydropyrido[4,5-c]pyridazinyl, Thiazolyl, thiadiazolyl, triazolyl, tetrazolyl, triazinyl, thieno[2,3-d]pyrimidinyl, thieno[3,2-d]pyrimidinyl, thieno[2,3 -c] pyridyl (thieno[2,3-c]pridinyl) and thiophenyl/thienyl.
在本公开中可以使用各种羟基保护基团。一般来说,保护基团使化学官能度对特定的反应条件不敏感,并且可以在分子中的该官能团上添加以及去除,而不实质上损害分子的其余部分。代表性的羟基保护基团公开于Beaucage等人,Tetrahedron 1992,48,2223-2311,以及Greene and Wuts,Protective Groups in Organic Synthesis,Chapter 2,2d ed,John Wiley&Sons,New York,1991中,以引用的方式将上述文献各自整体并入本文。在一些实施方式中,保护基团在碱性条件下稳定,但可以在酸性条件下脱除。在一些实施方式中,本文可使用的羟基保护基的非排他性实例包括二甲氧基三苯甲基(DMT)、单甲氧基三苯甲基、9-苯基氧杂蒽-9-基(Pixyl)或9-(对甲氧基苯基)氧杂蒽-9-基(Mox)。在一些实施方式中,本文可使用的羟基保护基的非排他性实例包括Tr(三苯甲基)、MMTr(4-甲氧基三苯甲基)、DMTr(4,4'-二甲氧基三苯甲基)或TMTr(4,4',4”-三甲氧基三苯甲基)。Various hydroxyl protecting groups can be used in this disclosure. Generally speaking, the protecting group makes the chemical functionality insensitive to specific reaction conditions, and can be added to and removed from the functional group in the molecule without substantially damaging the rest of the molecule. Representative hydroxyl protecting groups are disclosed in Beaucage et al., Tetrahedron 1992, 48, 2223-2311, and Greene and Wuts, Protective Groups in Organic Synthesis, Chapter 2, 2d, John Wiley & Sons, New York, 1991, for reference The above-mentioned documents are incorporated into this article in their entirety. In some embodiments, the protecting group is stable under basic conditions, but can be removed under acidic conditions. In some embodiments, non-exclusive examples of hydroxyl protecting groups that can be used herein include dimethoxytrityl (DMT), monomethoxytrityl, 9-phenylxanthene-9-yl (Pixyl) or 9-(p-methoxyphenyl)xanthene-9-yl (Mox). In some embodiments, non-exclusive examples of hydroxyl protecting groups that can be used herein include Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-dimethoxy Trityl) or TMTr (4,4',4"-trimethoxytrityl).
“受试者”一词,如本文所使用的,指任何动物,例如哺乳动物或有袋动物。本公开的受试者包括但不限于人类、非人灵长类(例如,恒河猴或其他类型的猕猴)、小鼠、猪、马、驴、牛、绵羊、大鼠或任何种类的家禽。The term "subject", as used herein, refers to any animal, such as a mammal or marsupial. Subjects of the present disclosure include, but are not limited to, humans, non-human primates (for example, rhesus monkeys or other types of macaques), mice, pigs, horses, donkeys, cattle, sheep, rats, or any kind of poultry .
如本文所使用的,“治疗”是指的是获得有益的或期望的结果的方法,包括但不限于治疗益处。“治疗益处”意味着根除或改善被治疗的潜在障碍。此外,治疗益处通过根除或改善与潜在障碍相关的一个或多个生理症状,从而在受试者中观察到改善而获得,尽管受试者可能仍然受到潜在障碍的折磨。As used herein, "treatment" refers to a method of obtaining beneficial or desired results, including but not limited to therapeutic benefits. "Therapeutic benefit" means eradicating or improving the underlying barriers being treated. In addition, therapeutic benefits are obtained by eradicating or improving one or more physical symptoms associated with the underlying disorder, thereby observing improvement in the subject, although the subject may still be afflicted by the underlying disorder.
如本文所使用的,“预防”是指获得有益或期望的结果的方法,包括但不限于预防性益处。为了获得“预防性益处”,可将siRNA缀合物或药物组合物给予有罹患特定疾病风险的受试者,或给予报告疾病的一种或多种生理症状的受试者,即便可能该疾病的诊断尚未作出。As used herein, "prevention" refers to methods of obtaining beneficial or desired results, including but not limited to preventive benefits. In order to obtain "preventive benefits", siRNA conjugates or pharmaceutical compositions can be administered to subjects who are at risk of suffering from a specific disease, or to subjects who report one or more physiological symptoms of the disease, even if the disease is possible The diagnosis has not yet been made.
在一方面,本公开提供了六种能够抑制PCSK9基因表达的siRNA。In one aspect, the present disclosure provides six siRNAs that can inhibit PCSK9 gene expression.
本公开的siRNA含有核苷酸基团作为基本结构单元,本领域技术人员公知,所述核苷酸基团含有磷酸基团、核糖基团和碱基,在此不再赘述。The siRNA of the present disclosure contains a nucleotide group as a basic structural unit, and those skilled in the art know that the nucleotide group contains a phosphate group, a ribose group and a base, which will not be repeated here.
本公开的siRNA含有正义链和反义链,所述正义链和反义链长度相同或不同,所述正义链的长度为19-23个核苷酸,反义链的长度为19-26个核苷酸。这样,本公开提供的siRNA正义链和反义链的长度比可以是19/19、19/20、19/21、19/22、19/23、19/24、19/25、19/26、20/20、20/21、20/22、20/23、20/24、20/25、20/26、21/20、21/21、21/22、21/23、21/24、21/25、21/26、22/20、22/21、22/22、22/23、22/24、22/25、22/26、23/20、23/21、23/22、23/23、23/24、23/25或23/26。在一些实施方式中,所述siRNA正义链和反义链的长度比为19/21、21/23或23/25。The siRNA of the present disclosure contains a sense strand and an antisense strand, the length of the sense strand and the antisense strand are the same or different, the length of the sense strand is 19-23 nucleotides, and the length of the antisense strand is 19-26 Nucleotides. In this way, the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure can be 19/19, 19/20, 19/21, 19/22, 19/23, 19/24, 19/25, 19/26, 20/20, 20/21, 20/22, 20/23, 20/24, 20/25, 20/26, 21/20, 21/21, 21/22, 21/23, 21/24, 21/ 25, 21/26, 22/20, 22/21, 22/22, 22/23, 22/24, 22/25, 22/26, 23/20, 23/21, 23/22, 23/23, 23/24, 23/25 or 23/26. In some embodiments, the length ratio of the siRNA sense strand and antisense strand is 19/21, 21/23, or 23/25.
第一种siRNAThe first siRNA
按照本公开,所述siRNA可以是第一种siRNA。According to the present disclosure, the siRNA may be the first siRNA.
所述第一种siRNA含有正义链和反义链,所述第一种siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,其中,所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列长度相等,且不多于3个核苷酸差异:The first siRNA contains a sense strand and an antisense strand, each nucleotide in the first siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 1 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 2 The length is equal, and no more than 3 nucleotide differences:
5'-AAGCAAGCAGACAUUUAUZ 1-3'(SEQ ID NO:1); 5'-AAGCAAGCAGACAUUUAUZ 1 -3' (SEQ ID NO:1);
5'-Z 2AUAAAUGUCUGCUUGCUU-3'(SEQ ID NO:2), 5'-Z 2 AUAAAUGUCUGCUUGCUU-3' (SEQ ID NO: 2),
其中,Z 1为C,Z 2为G,所述核苷酸序列I中包含位置对应于Z 1的核苷酸Z 3,所述核苷酸序列II中包含位置对应于Z 2的核苷酸Z 4,所述Z 4是所述反义链5'末端的第一个核苷酸。 Wherein, Z 1 is C, Z 2 is G, the nucleotide sequence I contains a nucleotide Z 3 whose position corresponds to Z 1 , and the nucleotide sequence II contains a nucleoside whose position corresponds to Z 2 Acid Z 4 , the Z 4 is the first nucleotide at the 5'end of the antisense strand.
在上文与下文中,“位置对应”是指从核苷酸序列相同端起算,处于核苷酸序列中相同的位置。例如,核苷酸序列I的3'端第1个核苷酸是位置对应于SEQ ID NO:1的3'端第1个核苷酸的核苷酸。In the above and below, "positional correspondence" refers to the same position in the nucleotide sequence from the same end of the nucleotide sequence. For example, the first nucleotide at the 3'end of the nucleotide sequence I is the nucleotide whose position corresponds to the first nucleotide at the 3'end of SEQ ID NO:1.
在一些实施方式中,所述正义链仅包含核苷酸序列I,所述反义链仅包含核苷酸序列II。In some embodiments, the sense strand only includes nucleotide sequence I, and the antisense strand only includes nucleotide sequence II.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间不多于1个核苷酸差异。In some embodiments, there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1, and/or the nucleotide sequence II and SEQ ID NO:1 ID NO: No more than one nucleotide difference between the nucleotide sequences shown in 2.
在一些实施方式中,所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间的核苷酸差异包括Z 4位置处的差异,且Z 4选自A、U或C。在一些实施方式中,所述核苷酸差异为Z 4位置处的差异,Z 4选自A、U或C。在一些实施方式中,Z 3是与Z 4互补的核苷酸。具有上述核苷酸差异的siRNA具有较高的siRNA的靶mRNA抑制能力,而这些包含核苷酸差异的siRNA也在本公开的保护范围之内。 In some embodiments, the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 2 includes the difference at position Z 4 , and Z 4 is selected from A, U or C. In some embodiments, the nucleotide difference is a difference at the Z 4 position, and Z 4 is selected from A, U, or C. In some embodiments, Z 3 is a nucleotide that is complementary to Z 4 . The siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
在一些实施方式中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补;所述基本上反向互补是指两个核苷酸序列之间存在不多于3个的碱基错配;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;完全反向互补是指两个核苷酸序列之间没有碱基错配。In some embodiments, the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary; the substantially reverse complement refers to two nuclei There are no more than 3 base mismatches between the nucleotide sequences; the substantially reverse complementation refers to the presence of no more than 1 base mismatch between two nucleotide sequences; complete reverse complementarity It means that there is no base mismatch between two nucleotide sequences.
在一些实施方式中,核苷酸序列I是SEQ ID NO:3所示的核苷酸序列,核苷酸序列II是SEQ ID NO:4所示的核苷酸序列:In some embodiments, the nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 3, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 4:
5'-AAGCAAGCAGACAUUUAUZ 3-3'(SEQ ID NO:3); 5'-AAGCAAGCAGACAUUUAUZ 3 -3' (SEQ ID NO: 3);
5'-Z 4AUAAAUGUCUGCUUGCUU-3'(SEQ ID NO:4), 5'-Z 4 AUAAAUGUCUGCUUGCUU-3' (SEQ ID NO: 4),
其中,所述Z 4是反义链5'末端的第一个核苷酸,Z 3选自A、U、G或C,并且Z 4是与Z 3互补的核苷酸;在一些实施方式中,Z 3为C,Z 4为G。 Wherein, Z 4 is the first nucleotide at the 5'end of the antisense strand, Z 3 is selected from A, U, G or C, and Z 4 is a nucleotide complementary to Z 3 ; in some embodiments Among them, Z 3 is C and Z 4 is G.
在一些实施方式中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV长度各自为1-4个核苷酸;所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或者完全反向互补;所述核苷酸序列III连接在所述核苷酸序列I的5'末端,所述核苷酸序列IV连接在所述核苷酸序列II的3'末端。在一些实施方式中,所述核苷酸序列IV与第二段核苷酸序列实质上反向互补或者完全反向互补,该第二段核苷酸序列是指和靶mRNA中与由SEQ ID NO:1表示的核苷酸序列的5'末端相邻、且长度与所述核苷酸序列IV相同的核苷酸序列。In some embodiments, the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV. The length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II. In some embodiments, the nucleotide sequence IV is substantially reverse-complementary or completely reverse-complementary to the second nucleotide sequence, and the second nucleotide sequence refers to the sequence in the target mRNA with the SEQ ID NO: 1 represents a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence and has the same length as the nucleotide sequence IV.
在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度均为1个核苷酸,核苷酸序列III的碱基为C,核苷酸序列IV的碱基为G;此时,正义链和反义链的长度比为20/20;或者,核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CC,核苷酸序列IV的碱基组成为GG;此时,正义链和反义链的长度比为21/21;或者,核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CCC,核苷酸序列IV的碱基组成为GGG;此时,正义链和反义链的长度比为22/22;或者,核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为ACCC,核苷酸序列IV的碱基组成为GGGU;此时,正义链和反义链的长度比为23/23。在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度为2个核苷酸,按照5' 末端到3'末端的方向,核苷酸序列III的碱基组成为CC,核苷酸序列IV的碱基组成为GG;此时,正义链和反义链的长度比为21/21。In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV are both 1 nucleotide, the base of the nucleotide sequence III is C, and the base of the nucleotide sequence IV is G ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside The base composition of acid sequence III is CC, and the base composition of nucleotide sequence IV is GG; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of nucleotide sequences III and IV Both are 3 nucleotides. According to the direction from the 5'end to the 3'end, the base composition of nucleotide sequence III is CCC, and the base composition of nucleotide sequence IV is GGG; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is ACCC, the base composition of nucleotide sequence IV is GGGU; at this time, the length ratio of the sense strand and the antisense strand is 23/23. In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is CC , The base composition of nucleotide sequence IV is GG; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
在一些实施方式中,核苷酸序列III和核苷酸序列IV完全反向互补,因此,给出了核苷酸序列III的碱基,核苷酸序列IV的碱基也就确定了。In some embodiments, the nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
第二种siRNASecond siRNA
按照本公开,所述siRNA可以是第二种siRNA。According to the present disclosure, the siRNA may be a second siRNA.
所述第二种siRNA含有正义链和反义链,所述第二种siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,其中,所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列长度相等,且不多于3个核苷酸差异:The second siRNA contains a sense strand and an antisense strand, each nucleotide in the second siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 61 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 62 The length is equal, and no more than 3 nucleotide differences:
5'-UUUGUAGCAUUUUUAUUAZ 5-3'(SEQ ID NO:61); 5'-UUUGUAGCAUUUUUAUUAZ 5 -3' (SEQ ID NO: 61);
5'-Z 6UAAUAAAAAUGCUACAAA-3'(SEQ ID NO:62), 5'-Z 6 UAAUAAAAAUGCUACAAA-3' (SEQ ID NO: 62),
其中,Z 5为A,Z 6为U,所述核苷酸序列I中包含位置对应于Z 5的核苷酸Z 7,所述核苷酸序列II中包含位置对应于Z 6的核苷酸Z 8,所述Z 8是所述反义链5'末端的第一个核苷酸。 Wherein, Z 5 is A, Z 6 is U, the nucleotide sequence I contains a nucleotide Z 7 whose position corresponds to Z 5 , and the nucleotide sequence II contains a nucleoside whose position corresponds to Z 6 Acid Z 8 , the Z 8 is the first nucleotide at the 5'end of the antisense strand.
在一些实施方式中,所述正义链仅包含核苷酸序列I,所述反义链仅包含核苷酸序列II。In some embodiments, the sense strand only includes nucleotide sequence I, and the antisense strand only includes nucleotide sequence II.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间不多于1个核苷酸差异。In some embodiments, there is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61, and/or the nucleotide sequence II and SEQ ID NO: No more than one nucleotide difference between the nucleotide sequences shown in 62.
在一些实施方式中,所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间的核苷酸差异包括Z 8位置处的差异,且Z 8选自A、C或G。在一些实施方式中,所述核苷酸差异为Z 8位置处的差异,Z 8选自A、C或G。在一些实施方式中,Z 7是与Z 8互补的核苷酸。具有上述核苷酸差异的siRNA具有较高的siRNA的靶mRNA抑制能力,而这些包含核苷酸差异的siRNA也在本公开的保护范围之内。 In some embodiments, the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 62 includes the difference at the Z 8 position, and Z 8 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 8 position, and Z 8 is selected from A, C, or G. In some embodiments, Z 7 is a nucleotide that is complementary to Z 8 . The siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
在一些实施方式中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补。In some embodiments, the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
在一些实施方式中,核苷酸序列I是SEQ ID NO:63所示的核苷酸序列,核苷酸序列II是SEQ ID NO:64所示的核苷酸序列:In some embodiments, the nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 63, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 64:
5'-UUUGUAGCAUUUUUAUUAZ 7-3'(SEQ ID NO:63); 5'-UUUGUAGCAUUUUUAUUAZ 7 -3' (SEQ ID NO: 63);
5'-Z 8UAAUAAAAAUGCUACAAA-3'(SEQ ID NO:64), 5'-Z 8 UAAUAAAAAUGCUACAAA-3' (SEQ ID NO: 64),
其中,所述Z 8是反义链5'末端的第一个核苷酸,Z 7选自A、U、G或C,并且Z 8是与Z 7互补的核苷酸;在一些实施方式中,Z 7为A,Z 8为U。 Wherein, Z 8 is the first nucleotide at the 5'end of the antisense strand, Z 7 is selected from A, U, G, or C, and Z 8 is a nucleotide complementary to Z 7 ; in some embodiments Among them, Z 7 is A and Z 8 is U.
在一些实施方式中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV长度各自为1-4个核苷酸;所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或者完全反向互补;所述核苷酸序列III连接在所述核苷酸序列I的5'末端,所述核苷酸序列IV连接在所述核苷酸序列II的3'末端,所述核苷酸序列IV与第二段核苷酸序列实质上反向互补或者完全反向互补,该第二段核苷酸序列是指和靶mRNA中与由SEQ ID NO:61表示的核苷酸序列的5'末端相邻、且长度与所述核苷酸序列IV相同的核苷酸序列。In some embodiments, the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV. The length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence, The second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 61 in the target mRNA and has the same length as the nucleotide sequence IV .
在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度均为1个核苷酸,核苷酸序列III的碱基为U,核苷酸序列IV的碱基为A;此时,正义链和反义链的长度比为20/20;或者,核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GU,核苷酸序列IV的碱基组成为AC;此时,正义链和反义链的长度比为21/21;或者,核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GGU,核苷酸序列IV的碱基组成为ACC;此时,正义链和反义链的长度比为22/22;或者,核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GGGU,核苷酸序列IV的碱基组成为ACCC;此时,正义链和反义链的长度比为23/23。在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GU,核苷酸序列IV的碱基组成为AC;此时,正义链和反义链的长度比为21/21。In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is U, and the base of the nucleotide sequence IV is A ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside The base composition of acid sequence III is GU, and the base composition of nucleotide sequence IV is AC; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides. According to the direction from the 5'end to the 3'end, the base composition of nucleotide sequence III is GGU, and the base composition of nucleotide sequence IV is ACC; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is GGGU, the base composition of nucleotide sequence IV is ACCC; at this time, the length ratio of the sense strand and the antisense strand is 23/23. In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is GU , The base composition of nucleotide sequence IV is AC; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
在一些实施方式中,核苷酸序列III和核苷酸序列IV完全反向互补,因此,给出了核苷酸序列III的碱基,核苷酸序列IV的碱基也就确定了。In some embodiments, the nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
第三种siRNAThe third siRNA
按照本公开,所述siRNA可以是第三种siRNA。According to the present disclosure, the siRNA may be a third siRNA.
所述第三种siRNA含有正义链和反义链,所述第三种siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸 序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,其中,所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列长度相等,且不多于3个核苷酸差异:The third siRNA contains a sense strand and an antisense strand, each nucleotide in the third siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I and the nucleotide sequence shown in SEQ ID NO: 121 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 122 The length is equal, and no more than 3 nucleotide differences:
5'-GCCUGGAGUUUAUUCGGAZ 9-3'(SEQ ID NO:121); 5'-GCCUGGAGUUUAUUCGGAZ 9 -3' (SEQ ID NO: 121);
5'-Z 10UCCGAAUAAACUCCAGGC-3'(SEQ ID NO:122), 5'-Z 10 UCCGAAUAAACUCCAGGC-3' (SEQ ID NO: 122),
其中,Z 9为A,Z 10为U,所述核苷酸序列I中包含位置对应于Z 9的核苷酸Z 11,所述核苷酸序列II中包含位置对应于Z 10的核苷酸Z 12,所述Z 12是所述反义链5'末端的第一个核苷酸。 Wherein, Z 9 is A, Z 10 is U, the nucleotide sequence I contains the nucleotide Z 11 whose position corresponds to Z 9 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 10 Acid Z 12 , the Z 12 is the first nucleotide at the 5'end of the antisense strand.
在一些实施方式中,所述正义链仅包含核苷酸序列I,所述反义链仅包含核苷酸序列II。In some embodiments, the sense strand only includes nucleotide sequence I, and the antisense strand only includes nucleotide sequence II.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间不多于1个核苷酸差异。In some embodiments, there is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121, and/or the nucleotide sequence II and SEQ ID NO: 122 has no more than 1 nucleotide difference between the nucleotide sequences shown.
在一些实施方式中,所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间的核苷酸差异包括Z 12位置处的差异,且Z 12选自A、C或G。在一些实施方式中,所述核苷酸差异为Z 12位置处的差异,Z 12选自A、C或G。在一些实施方式中,Z 11是与Z 12互补的核苷酸。具有上述核苷酸差异的siRNA具有较高的siRNA的靶mRNA抑制能力,而这些包含核苷酸差异的siRNA也在本公开的保护范围之内。 In some embodiments, the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 122 includes the difference at position Z 12 , and Z 12 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 12 position, and Z 12 is selected from A, C, or G. In some embodiments, Z 11 is a nucleotide that is complementary to Z 12 . The siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
在一些实施方式中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补。In some embodiments, the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
在一些实施方式中,核苷酸序列I是SEQ ID NO:123所示的核苷酸序列,核苷酸序列II是SEQ ID NO:124所示的核苷酸序列:In some embodiments, the nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 123, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 124:
5'-GCCUGGAGUUUAUUCGGAZ 11-3'(SEQ ID NO:123); 5'-GCCUGGAGUUUAUUCGGAZ 11 -3' (SEQ ID NO: 123);
5'-Z 12UCCGAAUAAACUCCAGGC-3'(SEQ ID NO:124), 5'-Z 12 UCCGAAUAAACUCCAGGC-3' (SEQ ID NO: 124),
其中,所述Z 12是反义链5'末端的第一个核苷酸,Z 11选自A、U、G或C,并且Z 12是与Z 11互补的核苷酸;在一些实施方式中,Z 11为A,Z 12为U。 Wherein, Z 12 is the first nucleotide at the 5'end of the antisense strand, Z 11 is selected from A, U, G, or C, and Z 12 is a nucleotide complementary to Z 11 ; in some embodiments Among them, Z 11 is A and Z 12 is U.
在一些实施方式中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV长度各自为1-4个核苷酸;所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或者完全反向互补;所述核苷酸序列III连接在所述核苷酸序列I的5'末端,所述核苷酸序列IV连接在所述核苷酸序列II的3'末端,所述核苷酸序列IV与第二段核苷酸序列实质上反向互补或者完全反向互补,该第二段核苷酸序列是指和靶mRNA中与由SEQ ID NO:121表示的核苷酸序列的5'末端相邻、且长度与所述核苷酸序列IV相同的核苷酸序列。In some embodiments, the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV. The length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence, The second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 121 in the target mRNA and has the same length as the nucleotide sequence IV .
在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度均为1个核苷酸,核苷酸序列III的碱基为G,核苷酸序列IV的碱基为C;此时,正义链和反义链的长度比为20/20;或者,核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AG,核苷酸序列IV的碱基组成为CU;此时,正义链和反义链的长度比为21/21;或者,核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UAG,核苷酸序列IV的碱基组成为CUA;此时,正义链和反义链的长度比为22/22;或者,核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUAG,核苷酸序列IV的碱基组成为CUAU;此时,正义链和反义链的长度比为23/23。在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AG,核苷酸序列IV的碱基组成为CU;此时,正义链和反义链的长度比为21/21。In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside The base composition of acid sequence III is AG, and the base composition of nucleotide sequence IV is CU; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides. According to the direction from the 5'end to the 3'end, the base composition of nucleotide sequence III is UAG, and the base composition of nucleotide sequence IV is CUA; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AUAG, the base composition of nucleotide sequence IV is CUAU; at this time, the length ratio of the sense strand and the antisense strand is 23/23. In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AG , The base composition of nucleotide sequence IV is CU; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
在一些实施方式中,核苷酸序列III和核苷酸序列IV完全反向互补,因此,给出了核苷酸序列III的碱基,核苷酸序列IV的碱基也就确定了。In some embodiments, the nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
第四种siRNAFourth siRNA
按照本公开,所述siRNA可以是第四种siRNA。According to the present disclosure, the siRNA may be the fourth siRNA.
所述第四种siRNA含有正义链和反义链,所述第四种siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,其中,所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列长度相等,且不多于3个核苷酸差异:The fourth siRNA contains a sense strand and an antisense strand, and each nucleotide in the fourth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 181 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 182 The length is equal, and no more than 3 nucleotide differences:
5'-CUGUUUUGCUUUUGUAACZ 13-3'(SEQ ID NO:181); 5'-CUGUUUUGCUUUUGUAACZ 13 -3' (SEQ ID NO: 181);
5'-Z 14GUUACAAAAGCAAAACAG-3'(SEQ ID NO:182), 5'-Z 14 GUUACAAAAGCAAAACAG-3' (SEQ ID NO: 182),
其中,Z 13为U,Z 14为A,所述核苷酸序列I中包含位置对应于Z 13的核苷酸Z 15,所述核苷酸序列II中包含位置对应于Z 14的核苷酸Z 16,所述Z 16是所述反义链5'末端的第一个核苷酸。 Wherein, Z 13 is U, Z 14 is A, the nucleotide sequence I contains the nucleotide Z 15 whose position corresponds to Z 13 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 14 Acid Z 16 , the Z 16 is the first nucleotide at the 5'end of the antisense strand.
在一些实施方式中,所述正义链仅包含核苷酸序列I,所述反义链仅包含核苷酸序列II。In some embodiments, the sense strand only includes nucleotide sequence I, and the antisense strand only includes nucleotide sequence II.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间不多于1个核苷酸差异。In some embodiments, there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181, and/or the nucleotide sequence II and SEQ ID NO: There is no more than one nucleotide difference between the nucleotide sequences shown in 182.
在一些实施方式中,所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间的核苷酸差异包括Z 16位置处的差异,且Z 16选自U、C或G。在一些实施方式中,所述核苷酸差异为Z 16位置处的差异,Z 16选自U、C或G。在一些实施方式中,Z 15是与Z 16互补的核苷酸。具有上述核苷酸差异的siRNA具有较高的siRNA的靶mRNA抑制能力,而这些包含核苷酸差异的siRNA也在本公开的保护范围之内。 In some embodiments, the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 182 includes the difference at position Z 16 , and Z 16 is selected from U, C or G. In some embodiments, the nucleotide difference is a difference at the Z 16 position, and Z 16 is selected from U, C, or G. In some embodiments, Z 15 is a nucleotide that is complementary to Z 16 . The siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
在一些实施方式中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补。In some embodiments, the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
在一些实施方式中,核苷酸序列I是SEQ ID NO:183所示的核苷酸序列,核苷酸序列II是SEQ ID NO:184所示的核苷酸序列:In some embodiments, the nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 183, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 184:
5'-CUGUUUUGCUUUUGUAACZ 15-3'(SEQ ID NO:183); 5'-CUGUUUUGCUUUUGUAACZ 15 -3' (SEQ ID NO: 183);
5'-Z 16GUUACAAAAGCAAAACAG-3'(SEQ ID NO:184), 5'-Z 16 GUUACAAAAGCAAAACAG-3' (SEQ ID NO: 184),
其中,所述Z 16是反义链5'末端的第一个核苷酸,Z 15选自A、U、G或C,并且Z 16是与Z 15互补的核苷酸;在一些实施方式中,Z 15为U,Z 16为A。 Wherein, Z 16 is the first nucleotide at the 5'end of the antisense strand, Z 15 is selected from A, U, G or C, and Z 16 is a nucleotide complementary to Z 15 ; in some embodiments Among them, Z 15 is U and Z 16 is A.
在一些实施方式中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV长度各自为1-4个核苷酸;所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或者完全反向互补;所述核苷酸序列III连接在所述核苷酸序列I的5'末端,所述核苷酸序列IV连接在所述核苷酸序列II的3'末端,所述核苷酸序列IV与第二段核苷酸序列实质上反向互补或者完全反向互补,该第二段核苷酸序列是指和靶mRNA中与由SEQ ID NO:181表示的核苷酸序列的5'末端相邻、且长度与所述核苷酸序列IV相同的核苷酸序列。In some embodiments, the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV. The length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence, This second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 181 in the target mRNA and has the same length as the nucleotide sequence IV .
在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度均为1个核苷酸,核苷酸序列III的碱基为C,核苷酸序列IV的碱基为G;此时,正义链和反义链的长度比为20/20;或者,核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AC,核苷酸序列IV的碱基组成为GU;此时,正义链和反义链的长度比为21/21;或者,核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GAC,核苷酸序列IV的碱基组成为GUC;此时,正义链和反义链的长度比为22/22;或者,核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AGAC,核苷酸序列IV的碱基组成为GUCU;此时,正义链和反义链的长度比为23/23。在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AC,核苷酸序列IV的碱基组成为GU;此时,正义链和反义链的长度比为21/21。In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV are both 1 nucleotide, the base of the nucleotide sequence III is C, and the base of the nucleotide sequence IV is G ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside The base composition of acid sequence III is AC, and the base composition of nucleotide sequence IV is GU; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides. According to the direction from the 5'end to the 3'end, the base composition of nucleotide sequence III is GAC, and the base composition of nucleotide sequence IV is GUC; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AGAC, the base composition of nucleotide sequence IV is GUCU; at this time, the length ratio of the sense strand and the antisense strand is 23/23. In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AC , The base composition of nucleotide sequence IV is GU; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
在一些实施方式中,核苷酸序列III和核苷酸序列IV完全反向互补,因此,给出了核苷酸序列III的碱基,核苷酸序列IV的碱基也就确定了。In some embodiments, the nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
第五种siRNAThe fifth siRNA
按照本公开,所述siRNA可以是第五种siRNA。According to the present disclosure, the siRNA may be the fifth siRNA.
所述第五种siRNA含有正义链和反义链,所述第五种siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,其中,所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列长度相等,且不多于3个核苷酸差异:The fifth siRNA contains a sense strand and an antisense strand, each nucleotide in the fifth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I and the nucleotide sequence shown in SEQ ID NO: 241 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 242 The length is equal, and no more than 3 nucleotide differences:
5'-GGUUUUGUAGCAUUUUUAZ 17-3'(SEQ ID NO:241); 5'-GGUUUUGUAGCAUUUUUAZ 17 -3' (SEQ ID NO: 241);
5'-Z 18UAAAAAUGCUACAAAACC-3'(SEQ ID NO:242), 5'-Z 18 UAAAAAUGCUACAAAACC-3' (SEQ ID NO: 242),
其中,Z 17为U,Z 18为A,所述核苷酸序列I中包含位置对应于Z 17的核苷酸Z 19,所述核苷酸序列II中包含位置对应于Z 18的核苷酸Z 20,所述Z 20是所述反义链5'末端的第一个核苷酸。 Wherein, Z 17 is U, Z 18 is A, the nucleotide sequence I contains the nucleotide Z 19 whose position corresponds to Z 17 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 18 Acid Z 20 , the Z 20 is the first nucleotide at the 5'end of the antisense strand.
在一些实施方式中,所述正义链仅包含核苷酸序列I,所述反义链仅包含核苷酸序列II。In some embodiments, the sense strand only includes nucleotide sequence I, and the antisense strand only includes nucleotide sequence II.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间不多于1个核苷酸差异。In some embodiments, there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241, and/or the nucleotide sequence II and SEQ ID NO: 242 shows no more than one nucleotide difference between the nucleotide sequences.
在一些实施方式中,所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间的核苷酸差异包括Z 20位置处的差异,且Z 20选自U、C或G。在一些实施方式中,所述核苷酸差异为Z 20位置处的差异,Z 20选自U、C或G。在一些实施方式中,Z 19是与Z 20互补的核苷酸。具有上述 核苷酸差异的siRNA具有较高的siRNA的靶mRNA抑制能力,而这些包含核苷酸差异的siRNA也在本公开的保护范围之内。 In some embodiments, the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 242 includes the difference at position Z 20 , and Z 20 is selected from U, C or G. In some embodiments, the difference is a difference between the nucleotide at position 20 Z, Z 20 is selected from U, C or G. In some embodiments, Z 19 is a nucleotide that is complementary to Z 20 . The siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
在一些实施方式中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补。In some embodiments, the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
在一些实施方式中,核苷酸序列I是SEQ ID NO:243所示的核苷酸序列,核苷酸序列II是SEQ ID NO:244所示的核苷酸序列:In some embodiments, the nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 243, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 244:
5'-GGUUUUGUAGCAUUUUUAZ 19-3'(SEQ ID NO:243); 5'-GGUUUUGUAGCAUUUUUAZ 19 -3' (SEQ ID NO: 243);
5'-Z 20UAAAAAUGCUACAAAACC-3'(SEQ ID NO:244), 5'-Z 20 UAAAAAUGCUACAAAACC-3' (SEQ ID NO: 244),
其中,所述Z 20是反义链5'末端的第一个核苷酸,Z 19选自A、U、G或C,并且Z 20是与Z 19互补的核苷酸;在一些实施方式中,Z 19为U,Z 20为A。 Wherein, Z 20 is the first nucleotide at the 5'end of the antisense strand, Z 19 is selected from A, U, G or C, and Z 20 is a nucleotide complementary to Z 19 ; in some embodiments Among them, Z 19 is U and Z 20 is A.
在一些实施方式中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV长度各自为1-4个核苷酸;所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或者完全反向互补;所述核苷酸序列III连接在所述核苷酸序列I的5'末端,所述核苷酸序列IV连接在所述核苷酸序列II的3'末端,所述核苷酸序列IV与第二段核苷酸序列实质上反向互补或者完全反向互补,该第二段核苷酸序列是指和靶mRNA中与由SEQ ID NO:241表示的核苷酸序列的5'末端相邻、且长度与所述核苷酸序列IV相同的核苷酸序列。In some embodiments, the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV. The length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence, The second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 241 and has the same length as the nucleotide sequence IV in the target mRNA .
在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度均为1个核苷酸,核苷酸序列III的碱基为G,核苷酸序列IV的碱基为C;此时,正义链和反义链的长度比为20/20;或者,核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG,核苷酸序列IV的碱基组成为CA;此时,正义链和反义链的长度比为21/21;或者,核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CUG,核苷酸序列IV的碱基组成为CAG;此时,正义链和反义链的长度比为22/22;或者,核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UCUG,核苷酸序列IV的碱基组成为CAGA;此时,正义链和反义链的长度比为23/23。在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG,核苷酸序列IV的碱基组成为CA;此时,正义链和反义链的长度比为21/21。In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside The base composition of acid sequence III is UG, and the base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides. According to the direction from the 5'end to the 3'end, the base composition of nucleotide sequence III is CUG, and the base composition of nucleotide sequence IV is CAG; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UCUG, the base composition of nucleotide sequence IV is CAGA; at this time, the length ratio of the sense strand and the antisense strand is 23/23. In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UG , The base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
在一些实施方式中,核苷酸序列III和核苷酸序列IV完全反向互补,因此,给出了核苷酸序列III的碱基,核苷酸序列IV的碱基也就确定了。In some embodiments, the nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
第六种siRNASixth siRNA
按照本公开,所述siRNA可以是第六种siRNA。According to the present disclosure, the siRNA may be a sixth siRNA.
所述第六种siRNA含有正义链和反义链,所述第六种siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,其中,所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列长度相等,且不多于3个核苷酸差异:The sixth siRNA contains a sense strand and an antisense strand, each nucleotide in the sixth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 301 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 302 The length is equal, and no more than 3 nucleotide differences:
5'-GUGACUUUUUAAAAUAAAZ 21-3'(SEQ ID NO:301); 5'-GUGACUUUUUAAAAUAAAZ 21 -3' (SEQ ID NO: 301);
5'-Z 22UUUAUUUUAAAAAGUCAC-3'(SEQ ID NO:302), 5'-Z 22 UUUAUUUUAAAAAGUCAC-3' (SEQ ID NO: 302),
其中,Z 21为A,Z 22为U,所述核苷酸序列I中包含位置对应于Z 21的核苷酸Z 23,所述核苷酸序列II中包含位置对应于Z 22的核苷酸Z 24,所述Z 24是所述反义链5'末端的第一个核苷酸。 Wherein, Z 21 is A, Z 22 is U, the nucleotide sequence I contains the nucleotide Z 23 whose position corresponds to Z 21 , and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 22 Acid Z 24 , the Z 24 is the first nucleotide at the 5'end of the antisense strand.
在一些实施方式中,所述正义链仅包含核苷酸序列I,所述反义链仅包含核苷酸序列II。In some embodiments, the sense strand only includes nucleotide sequence I, and the antisense strand only includes nucleotide sequence II.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间不多于1个核苷酸差异。In some embodiments, there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301, and/or the nucleotide sequence II and SEQ ID NO: 302 shows no more than one nucleotide difference between the nucleotide sequences.
在一些实施方式中,所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间的核苷酸差异包括Z 24位置处的差异,且Z 24选自A、C或G。在一些实施方式中,所述核苷酸差异为Z 24位置处的差异,Z 24选自A、C或G。在一些实施方式中,Z 23是与Z 24互补的核苷酸。具有上述核苷酸差异的siRNA具有较高的siRNA的靶mRNA抑制能力,而这些包含核苷酸差异的siRNA也在本公开的保护范围之内。 In some embodiments, the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 302 includes the difference at position Z 24 , and Z 24 is selected from A, C or G. In some embodiments, the difference is a difference between the nucleotide at position 24 Z, Z 24 is selected from A, C or G. In some embodiments, Z 23 is a nucleotide complementary to Z 24 . The siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
在一些实施方式中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补。In some embodiments, the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
在一些实施方式中,核苷酸序列I是SEQ ID NO:303所示的核苷酸序列,核苷酸序列II是SEQ ID NO:304所示的核苷酸序列:In some embodiments, the nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 303, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 304:
5'-GUGACUUUUUAAAAUAAAZ 23-3'(SEQ ID NO:303); 5'-GUGACUUUUUAAAAUAAAZ 23 -3' (SEQ ID NO: 303);
5'-Z 24UUUAUUUUAAAAAGUCAC-3'(SEQ ID NO:304), 5'-Z 24 UUUAUUUUAAAAAGUCAC-3' (SEQ ID NO: 304),
其中,所述Z 24是反义链5'末端的第一个核苷酸,Z 23选自A、U、G或C,并且Z 24是与Z 23互补的核苷酸;在一些实施方式中,Z 23为A,Z 24为U。 Wherein, Z 24 is the first nucleotide at the 5'end of the antisense strand, Z 23 is selected from A, U, G, or C, and Z 24 is a nucleotide complementary to Z 23 ; in some embodiments Among them, Z 23 is A and Z 24 is U.
在一些实施方式中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV长度各自为1-4个核苷酸;所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或者完全反向互补;所述核苷酸序列III连接在所述核苷酸序列I的5'末端,所述核苷酸序列IV连接在所述核苷酸序列II的3'末端,所述核苷酸序列IV与第二段核苷酸序列实质上反向互补或者完全反向互补,该第二段核苷酸序列是指和靶mRNA中与由SEQ ID NO:301表示的核苷酸序列的5'末端相邻、且长度与所述核苷酸序列IV相同的核苷酸序列。In some embodiments, the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV. The length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence, This second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 301 in the target mRNA and has the same length as the nucleotide sequence IV .
在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度均为1个核苷酸,核苷酸序列III的碱基为G,核苷酸序列IV的碱基为C;此时,正义链和反义链的长度比为20/20;或者,核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG,核苷酸序列IV的碱基组成为CA;此时,正义链和反义链的长度比为21/21;或者,核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUG,核苷酸序列IV的碱基组成为CAU;此时,正义链和反义链的长度比为22/22;或者,核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UAUG,核苷酸序列IV的碱基组成为CAUA;此时,正义链和反义链的长度比为23/23。在一些实施方式中,所述核苷酸序列III和核苷酸序列IV的长度为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG,核苷酸序列IV的碱基组成为CA;此时,正义链和反义链的长度比为21/21。In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, The base composition of acid sequence III is UG, and the base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides. According to the direction from the 5'end to the 3'end, the base composition of nucleotide sequence III is AUG, and the base composition of nucleotide sequence IV is CAU; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UAUG, the base composition of nucleotide sequence IV is CAUA; at this time, the length ratio of the sense strand and the antisense strand is 23/23. In some embodiments, the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UG , The base composition of nucleotide sequence IV is CA; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
在一些实施方式中,核苷酸序列III和核苷酸序列IV完全反向互补,因此,给出了核苷酸序列III的碱基,核苷酸序列IV的碱基也就确定了。In some embodiments, the nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
siRNA的悬垂末端和修饰Overhanging ends and modifications of siRNA
以下,对核苷酸序列V、核酸序列、siRNA中的核苷酸修饰以及修饰序列的描述适用于上述第一种siRNA至第六种siRNA中的任意一种。即如果没有特指,下面对siRNA的描述应视为是对第一种siRNA、第二种siRNA、第三种siRNA、第四种siRNA、第五种siRNA和第六种siRNA逐一进行了描述。例如,如不特别指明具体的siRNA,“所述siRNA还含有核苷酸序列V”的意思是“第一种siRNA、第二种siRNA、第三种siRNA、第四种siRNA、第五种siRNA或第六种siRNA还含有核苷酸序列V”。In the following, the description of nucleotide sequence V, nucleic acid sequence, nucleotide modification in siRNA, and modification sequence is applicable to any one of the above-mentioned first siRNA to sixth siRNA. That is, if there is no specific indication, the following description of siRNA should be regarded as describing the first siRNA, the second siRNA, the third siRNA, the fourth siRNA, the fifth siRNA and the sixth siRNA one by one. . For example, if no specific siRNA is specified, "the siRNA also contains a nucleotide sequence V" means "the first siRNA, the second siRNA, the third siRNA, the fourth siRNA, the fifth siRNA Or the sixth siRNA also contains the nucleotide sequence V".
在一些实施方式中,所述正义链和反义链长度不同,所述反义链还含有核苷酸序列V,核苷酸序列V的长度为1至3个核苷酸,连接在所述反义链的3'末端,构成反义链的3'突出端。由此,本公开提供的siRNA正义链和反义链的长度比可以是19/20、19/21、19/22、20/21、20/22、20/23、21/22、21/23、21/24、22/23、22/24、22/25、23/24、23/25或23/26。在一些实施方式中,所述核苷酸序列V的长度为2个核苷酸,由此,本公开提供的siRNA正义链和反义链的长度比可以是19/21、21/23或23/25。In some embodiments, the length of the sense strand and the antisense strand are different, and the antisense strand also contains a nucleotide sequence V. The length of the nucleotide sequence V is 1 to 3 nucleotides. The 3'end of the antisense strand constitutes the 3'overhang of the antisense strand. Thus, the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure can be 19/20, 19/21, 19/22, 20/21, 20/22, 20/23, 21/22, 21/23 , 21/24, 22/23, 22/24, 22/25, 23/24, 23/25 or 23/26. In some embodiments, the length of the nucleotide sequence V is 2 nucleotides. Therefore, the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure may be 19/21, 21/23, or 23. /25.
所述核苷酸序列V中的每一个核苷酸可以是任意的核苷酸,为了便于合成并节约合成成本,所述核苷酸序列V为连续的2个胸腺嘧啶脱氧核糖核苷酸(dTdT)或连续的2个尿嘧啶核糖核苷酸(UU);或者,为了提高siRNA反义链与靶mRNA的亲和力,核苷酸序列V与靶mRNA的相应位置的核苷酸互补。因此,在一些实施方式中,本公开的siRNA的正义链和反义链的长度之比为19/21或21/23,此时,本公开的siRNA具有更好的mRNA沉默活性。Each nucleotide in the nucleotide sequence V can be any nucleotide. In order to facilitate synthesis and save synthesis cost, the nucleotide sequence V is two consecutive thymine deoxyribonucleotides ( dTdT) or two consecutive uracil ribonucleotides (UU); or, in order to increase the affinity of the siRNA antisense strand with the target mRNA, the nucleotide sequence V is complementary to the nucleotide at the corresponding position of the target mRNA. Therefore, in some embodiments, the ratio of the length of the sense strand and the antisense strand of the siRNA of the present disclosure is 19/21 or 21/23. At this time, the siRNA of the present disclosure has better mRNA silencing activity.
靶mRNA的相应位置的核苷酸是指与靶mRNA的第三段核苷酸序列在5'末端相邻的核苷酸或核苷酸序列,该第三段核苷酸序列是与核苷酸序列II实质上反向互补或完全反向互补,或者与核苷酸序列II和核苷酸序列IV构成的核苷酸序列实质上反向互补或完全反向互补的那段核苷酸序列。The nucleotide at the corresponding position of the target mRNA refers to the nucleotide or nucleotide sequence adjacent to the third nucleotide sequence of the target mRNA at the 5'end. Acid sequence II is substantially reverse complementary or completely reverse complementary, or the nucleotide sequence that is substantially reverse complementary or completely reverse complementary to the nucleotide sequence composed of nucleotide sequence II and nucleotide sequence IV .
在一些实施方式中,对于所述第一种siRNA,所述siRNA的正义链含有如SEQ ID NO:5所示的核苷酸序列,所述反义链含有如SEQ ID NO:6所示的核苷酸序列:In some embodiments, for the first siRNA, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 5, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 6 Nucleotide sequence:
5'-AAGCAAGCAGACAUUUAUZ 3-3'(SEQ ID NO:5); 5'-AAGCAAGCAGACAUUUAUZ 3 -3' (SEQ ID NO: 5);
5'-Z 4AUAAAUGUCUGCUUGCUUGG-3'(SEQ ID NO:6); 5'-Z 4 AUAAAUGUCUGCUUGCUUGG-3' (SEQ ID NO: 6);
或者,所述siRNA的正义链含有如SEQ ID NO:7所示的核苷酸序列,所述反义链含有如SEQ ID NO:8所示的核苷酸序列:Alternatively, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 7, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 8:
5'-CCAAGCAAGCAGACAUUUAUZ 3-3'(SEQ ID NO:7); 5'-CCAAGCAAGCAGACAUUUAUZ 3 -3' (SEQ ID NO: 7);
5'-Z 4AUAAAUGUCUGCUUGCUUGGGU-3'(SEQ ID NO:8); 5'-Z 4 AUAAAUGUCUGCUUGCUUGGGU-3' (SEQ ID NO: 8);
其中,所述Z 4是反义链5'末端的第一个核苷酸,Z 3选自A、U、G或C,并且Z 4是与Z 3互补的核苷酸。 Wherein, Z 4 is the first nucleotide at the 5'end of the antisense strand, Z 3 is selected from A, U, G or C, and Z 4 is a nucleotide complementary to Z 3 .
在一些实施方式中,对于所述第二种siRNA,所述siRNA的正义链含有如SEQ ID NO:65所示的核苷酸序列,所述反义链含有如SEQ ID NO:66所示的核苷酸序列:In some embodiments, for the second siRNA, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 65, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 66 Nucleotide sequence:
5'-UUUGUAGCAUUUUUAUUAZ 7-3'(SEQ ID NO:65); 5'-UUUGUAGCAUUUUUAUUAZ 7 -3' (SEQ ID NO: 65);
5'-Z 8UAAUAAAAAUGCUACAAAAC-3'(SEQ ID NO:66), 5'-Z 8 UAAUAAAAAUGCUACAAAAC-3' (SEQ ID NO: 66),
或者,所述siRNA的正义链含有如SEQ ID NO:67所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:68所示的核苷酸序列:Alternatively, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 67, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 68:
5'-GUUUUGUAGCAUUUUUAUUAZ 7-3'(SEQ ID NO:67); 5'-GUUUUGUAGCAUUUUUAUUAZ 7 -3' (SEQ ID NO: 67);
5'-Z 8UAAUAAAAAUGCUACAAAACCC-3'(SEQ ID NO:68), 5'-Z 8 UAAUAAAAAUGCUACAAAACCC-3' (SEQ ID NO: 68),
其中,所述Z 8是反义链5'末端的第一个核苷酸,Z 7选自A、U、G或C,并且Z 8是与Z 7互补的核苷酸。 Wherein, Z 8 is the first nucleotide at the 5'end of the antisense strand, Z 7 is selected from A, U, G or C, and Z 8 is a nucleotide complementary to Z 7 .
在一些实施方式中,对于所述第三种siRNA,所述siRNA的正义链含有如SEQ ID NO:125所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:126所示的核苷酸序列:In some embodiments, for the third siRNA, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 125, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 126. The nucleotide sequence shown:
5'-GCCUGGAGUUUAUUCGGAZ 11-3'(SEQ ID NO:125); 5'-GCCUGGAGUUUAUUCGGAZ 11 -3' (SEQ ID NO: 125);
5'-Z 12UCCGAAUAAACUCCAGGCCU-3'(SEQ ID NO:126), 5'-Z 12 UCCGAAUAAACUCCAGGCCU-3' (SEQ ID NO: 126),
或者,所述siRNA的正义链含有如SEQ ID NO:127所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:128所示的核苷酸序列:Alternatively, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 127, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 128:
5'-AGGCCUGGAGUUUAUUCGGAZ 11-3'(SEQ ID NO:127); 5'-AGGCCUGGAGUUUAUUCGGAZ 11 -3' (SEQ ID NO: 127);
5'-Z 12UCCGAAUAAACUCCAGGCCUAU-3'(SEQ ID NO:128), 5'-Z 12 UCCGAAUAAACUCCAGGCCUAU-3' (SEQ ID NO: 128),
其中,所述Z 12是反义链5'末端的第一个核苷酸,Z 11选自A、U、G或C,并且Z 12是与Z 11互补的核苷酸。 Wherein, Z 12 is the first nucleotide at the 5'end of the antisense strand, Z 11 is selected from A, U, G, or C, and Z 12 is a nucleotide complementary to Z 11 .
在一些实施方式中,对于所述第四种siRNA,所述siRNA的正义链含有如SEQ ID NO:185所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:186所示的核苷酸序列:In some embodiments, for the fourth siRNA, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 185, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 186. The nucleotide sequence shown:
5'-CUGUUUUGCUUUUGUAACZ 15-3'(SEQ ID NO:185); 5'-CUGUUUUGCUUUUGUAACZ 15 -3' (SEQ ID NO: 185);
5'-Z 16GUUACAAAAGCAAAACAGGU-3'(SEQ ID NO:186), 5'-Z 16 GUUACAAAAGCAAAACAGGU-3' (SEQ ID NO: 186),
或者,所述siRNA的正义链含有如SEQ ID NO:187所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:188所示的核苷酸序列:Alternatively, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 187, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 188:
5'-ACCUGUUUUGCUUUUGUAACZ 15-3'(SEQ ID NO:187); 5'-ACCUGUUUUGCUUUUGUAACZ 15 -3' (SEQ ID NO: 187);
5'-Z 16GUUACAAAAGCAAAACAGGUCU-3'(SEQ ID NO:188), 5'-Z 16 GUUACAAAAGCAAAACAGGUCU-3' (SEQ ID NO: 188),
其中,所述Z 16是反义链5'末端的第一个核苷酸,Z 15选自A、U、G或C,并且Z 16是与Z 15互补的核苷酸。 Wherein, Z 16 is the first nucleotide at the 5'end of the antisense strand, Z 15 is selected from A, U, G, or C, and Z 16 is a nucleotide complementary to Z 15 .
在一些实施方式中,对于所述第五种siRNA,所述siRNA的正义链含有如SEQ ID NO:245所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:246所示的核苷酸序列:In some embodiments, for the fifth siRNA, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 245, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 246. The nucleotide sequence shown:
5'-GGUUUUGUAGCAUUUUUAZ 19-3'(SEQ ID NO:245); 5'-GGUUUUGUAGCAUUUUUAZ 19 -3' (SEQ ID NO: 245);
5'-Z 20UAAAAAUGCUACAAAACCCA-3'(SEQ ID NO:246), 5'-Z 20 UAAAAAUGCUACAAAACCCA-3' (SEQ ID NO: 246),
或者,所述siRNA的正义链含有如SEQ ID NO:247所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:248所示的核苷酸序列:Alternatively, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 247, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 248:
5'-UGGGUUUUGUAGCAUUUUUAZ 19-3'(SEQ ID NO:247); 5'-UGGGUUUUGUAGCAUUUUUAZ 19 -3' (SEQ ID NO: 247);
5'-Z 20UAAAAAUGCUACAAAACCCAGA-3'(SEQ ID NO:248), 5'-Z 20 UAAAAAUGCUACAAAACCCAGA-3' (SEQ ID NO: 248),
其中,所述Z 20是反义链5'末端的第一个核苷酸,Z 19选自A、U、G或C,并且Z 20是与Z 19互补的核苷酸。 Wherein, Z 20 is the first nucleotide at the 5'end of the antisense strand, Z 19 is selected from A, U, G or C, and Z 20 is a nucleotide complementary to Z 19 .
在一些实施方式中,对于所述第六种siRNA,所述siRNA的正义链含有如SEQ ID NO:305所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:306所示的核苷酸序列:In some embodiments, for the sixth siRNA, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 305, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 306. The nucleotide sequence shown:
5'-GUGACUUUUUAAAAUAAAZ 23-3'(SEQ ID NO:305); 5'-GUGACUUUUUAAAAUAAAZ 23 -3' (SEQ ID NO: 305);
5'-Z 24UUUAUUUUAAAAAGUCACCA-3'(SEQ ID NO:306), 5'-Z 24 UUUAUUUUAAAAAGUCACCA-3' (SEQ ID NO: 306),
或者,所述siRNA的正义链含有如SEQ ID NO:307所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:308所示的核苷酸序列:Alternatively, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 307, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 308:
5'-UGGUGACUUUUUAAAAUAAAZ 23-3'(SEQ ID NO:307); 5'-UGGUGACUUUUUAAAAUAAAZ 23 -3' (SEQ ID NO: 307);
5'-Z 24UUUAUUUUAAAAAGUCACCAUA-3'(SEQ ID NO:308), 5'-Z 24 UUUAUUUUAAAAAGUCACCAUA-3' (SEQ ID NO: 308),
其中,所述Z 24是反义链5'末端的第一个核苷酸,Z 23选自A、U、G或C,并且Z 24是与Z 23互补的核苷酸。 Wherein, Z 24 is the first nucleotide at the 5'end of the antisense strand, Z 23 is selected from A, U, G or C, and Z 24 is a nucleotide complementary to Z 23 .
在一些实施方式中,本公开所述siRNA为表1a-1f中列出的siPCSKa1、siPCSKa2、siPCSKb1、siPCSKb2、siPCSKc1、siPCSKc2、siPCSKd1、siPCSKd2、siPCSKe1、siPCSKe2、siPCSKf1或siPCSKf2。In some embodiments, the siRNA described in the present disclosure is siPCSKa1, siPCSKa2, siPCSKb1, siPCSKb2, siPCSKc1, siPCSKc2, siPCSKd1, siPCSKd2, siPCSKe1, siPCSKe2, siPCSKf1, or siPCSKf2 listed in Tables 1a-1f.
如前所述,本公开的siRNA中的核苷酸各自独立地为修饰或未修饰的核苷酸。在一些实施方式中,本公开的siRNA中的核苷酸为未经修饰的核苷酸;在一些实施方式中,本公开的siRNA 中的部分或全部核苷酸为修饰的核苷酸,核苷酸基团上的这些修饰不会导致本公开的siRNA抑制PCSK9基因表达的功能明显削弱或丧失。As mentioned above, the nucleotides in the siRNA of the present disclosure are each independently a modified or unmodified nucleotide. In some embodiments, the nucleotides in the siRNA of the present disclosure are unmodified nucleotides; in some embodiments, some or all of the nucleotides in the siRNA of the present disclosure are modified nucleotides. These modifications on the nucleoside group will not cause the siRNA of the present disclosure to significantly weaken or lose the function of inhibiting PCSK9 gene expression.
在一些实施方式中,本公开的siRNA至少含有1个修饰的核苷酸。在本公开的上下文中,所使用的术语“修饰的核苷酸”是指核苷酸的核糖基2'位羟基被其他基团取代形成的核苷酸或核苷酸类似物,或者具有经修饰的碱基的核苷酸。所述修饰的核苷酸不会导致siRNA抑制基因表达的功能明显削弱或丧失。例如,可以选择J.K.Watts,G.F.Deleavey,and M.J.Damha,Chemically modified siRNA:tools and applications.Drug Discov Today,2008,13(19-20):842-55中公开的修饰的核苷酸。In some embodiments, the siRNA of the present disclosure contains at least one modified nucleotide. In the context of the present disclosure, the term "modified nucleotides" used refers to nucleotides or nucleotide analogs formed by replacing the 2'hydroxyl group of the ribose group of nucleotides with other groups, or having Nucleotides of modified bases. The modified nucleotides will not cause the siRNA to significantly weaken or lose the function of inhibiting gene expression. For example, one can select the modified nucleotides disclosed in J.K. Watts, G.F. Deleavey, and M.J. Damha, Chemically modified siRNA: tools and applications. Drug Discov Today, 2008, 13(19-20):842-55.
在一些实施方式中,本公开提供的siRNA的正义链或所述反义链中的至少一个核苷酸为修饰的核苷酸,和/或至少一个磷酸酯基为具有修饰基团的磷酸酯基;换句话说,所述正义链和所述反义链中至少一条单链的磷酸-糖骨架中的磷酸酯基和/或核糖基的至少一部分为具有修饰基团的磷酸酯基和/或具有修饰基团的核糖基。In some embodiments, at least one nucleotide in the sense strand or the antisense strand of the siRNA provided in the present disclosure is a modified nucleotide, and/or at least one phosphate group is a phosphate with a modified group In other words, at least a part of the phosphate group and/or ribose group in the phosphate-sugar backbone of at least one single chain in the sense strand and the antisense strand is a phosphate group with a modification group and/ Or a ribose group with a modified group.
在一些实施方式中,所述正义链和/或所述反义链中的全部核苷酸均为修饰的核苷酸。在一些实施方式中,本公开提供的siRNA的正义链和所述反义链中的每一个核苷酸独立地为氟代修饰的核苷酸或非氟代修饰的核苷酸。In some embodiments, all nucleotides in the sense strand and/or the antisense strand are modified nucleotides. In some embodiments, each nucleotide in the sense strand and the antisense strand of the siRNA provided in the present disclosure is independently a fluorinated modified nucleotide or a non-fluorinated modified nucleotide.
本公开的发明人惊奇地发现,本公开所述的siRNA在动物实验中获得了血浆中稳定性和基因沉默效率的高度平衡。The inventors of the present disclosure surprisingly found that the siRNA described in the present disclosure achieved a high balance of plasma stability and gene silencing efficiency in animal experiments.
在一些实施方式中,所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,并且,按照5'末端到3'末端的方向,所述核苷酸序列I中至少第7、8、9位的核苷酸为氟代修饰的核苷酸;按照5'末端到3'末端的方向,所述核苷酸序列II中至少第2、6、14、16位的核苷酸为氟代修饰的核苷酸。In some embodiments, the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and, in the direction from the 5'end to the 3'end, the nucleotide sequence I At least the 7th, 8th and 9th nucleotides are fluorinated modified nucleotides; according to the direction from the 5'end to the 3'end, at least the 2, 6, 14, 16th positions in the nucleotide sequence II The nucleotides are fluoro-modified nucleotides.
在一些实施方式中,所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,所述核苷酸序列I中氟代修饰的核苷酸不多于5个,并且,按照5'末端到3'末端的方向,所述核苷酸序列I的第7、8、9位的核苷酸为氟代修饰的核苷酸;所述核苷酸序列II中氟代修饰的核苷酸不多于7个,并且,所述核苷酸序列II的第2、6、14、16位的核苷酸为氟代修饰的核苷酸。In some embodiments, the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and there are no more than 5 fluoro-modified nucleotides in the nucleotide sequence I, In addition, according to the direction from the 5'end to the 3'end, the nucleotides at positions 7, 8, and 9 of the nucleotide sequence I are fluorinated modified nucleotides; the fluorine in the nucleotide sequence II There are no more than 7 modified nucleotides, and the nucleotides at positions 2, 6, 14, and 16 of the nucleotide sequence II are fluorinated modified nucleotides.
在一些实施方式中,按照5'末端到3'末端的方向,在所述正义链中,所述核苷酸序列I的第7、8、9位或者5、7、8、9位的核苷酸为氟代修饰的核苷酸,所述正义链中其余位置的核苷酸为非氟代修饰的核苷酸;按照5'末端到3'末端的方向,在所述反义链中,所述核苷酸序列II的第2、6、14、16位或者2、6、8、9、14、16位的核苷酸为氟代修饰的核苷酸,所述反义链中其余位置的核苷酸为非氟代修饰的核苷酸。In some embodiments, according to the direction from the 5'end to the 3'end, in the sense strand, the nucleus at positions 7, 8, 9 or 5, 7, 8, and 9 of the nucleotide sequence I Glycolic acid is a fluorinated modified nucleotide, and the nucleotides in the remaining positions in the sense strand are non-fluorinated modified nucleotides; in the direction from the 5'end to the 3'end, in the antisense strand The nucleotides at positions 2, 6, 14, 16 or 2, 6, 8, 9, 14, and 16 of the nucleotide sequence II are fluorinated modified nucleotides, and the antisense strand The nucleotides at the remaining positions are non-fluorinated modified nucleotides.
在本公开的上下文中,“氟代修饰的核苷酸”指核苷酸的核糖基2'位的羟基被氟取代形成的核苷酸,其具有以下式(7)所示的结构。“非氟代修饰的核苷酸”指核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸、或核苷酸类似物。在一些实施方式中,每一个非氟代修饰的核苷酸独立地选自核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸或核苷酸类似物中的一种。In the context of the present disclosure, "fluoromodified nucleotides" refer to nucleotides in which the hydroxyl group at the 2'position of the ribose group of the nucleotide is substituted with fluorine, and has a structure represented by the following formula (7). "Non-fluorinated modified nucleotides" refer to nucleotides or nucleotide analogs formed by replacing the hydroxyl group at the 2'position of the ribose group of the nucleotide with a non-fluorine group. In some embodiments, each non-fluorinated modified nucleotide is independently selected from among nucleotides or nucleotide analogs formed by the substitution of a non-fluorinated group for the hydroxyl group at the 2'position of the ribose group of the nucleotide. One kind.
这些核糖基2'位的羟基被非氟基团取代形成的核苷酸是本领域技术人员所公知的,这些核苷酸可以选自2'-烷氧基修饰的核苷酸、2'-经取代的烷氧基修饰的核苷酸、2'-烷基修饰的核苷酸、2'-经取代的烷基修饰的核苷酸、2'-氨基修饰的核苷酸、2'-经取代的氨基修饰的核苷酸、2'-脱氧核苷酸中的一种。The nucleotides formed by replacing the hydroxyl group at the 2'position of these ribose groups with non-fluorine groups are well known to those skilled in the art, and these nucleotides can be selected from 2'-alkoxy modified nucleotides, 2'- Substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-amino modified nucleotides, 2'- One of substituted amino-modified nucleotides and 2'-deoxynucleotides.
在一些实施方式中,2'-烷氧基修饰的核苷酸为2'-甲氧基(2'-OMe)修饰的核苷酸,如式(8)所示。在一些实施方式中,2'-经取代的烷氧基修饰的核苷酸,例如可以是2'-O-甲氧基乙基(2'-MOE)修饰的核苷酸,如式(9)所示。在一些实施方式中,2'-氨基(2'-NH 2)修饰的核苷酸如式(10)所示。在一些实施方式中,2'-脱氧核苷酸(DNA)如式(11)所示: In some embodiments, the 2'-alkoxy modified nucleotides are 2'-methoxy (2'-OMe) modified nucleotides, as shown in formula (8). In some embodiments, the 2'-substituted alkoxy-modified nucleotides can be, for example, 2'-O-methoxyethyl (2'-MOE) modified nucleotides, such as formula (9 ) Shown. In some embodiments, the 2'-amino (2'-NH 2 ) modified nucleotide is represented by formula (10). In some embodiments, the 2'-deoxynucleotide (DNA) is represented by formula (11):
Figure PCTCN2020091489-appb-000004
Figure PCTCN2020091489-appb-000004
核苷酸类似物指能够在核酸中代替核苷酸,但结构不同于腺嘌呤核糖核苷酸、鸟嘌呤核糖核苷酸、胞嘧啶核糖核苷酸、尿嘧啶核糖核苷酸或胸腺嘧啶脱氧核糖核苷酸的基团。在一些实施方式中,核苷酸类似物可以是异核苷酸、桥联的核苷酸或无环核苷酸。Nucleotide analogs refer to nucleotides that can replace nucleotides in nucleic acids, but the structure is different from adenine ribonucleotides, guanine ribonucleotides, cytosine ribonucleotides, uracil ribonucleotides or thymine deoxynucleotides The group of ribonucleotides. In some embodiments, the nucleotide analogs can be isonucleotides, bridged nucleotides, or acyclic nucleotides.
桥联的核苷酸(bridged nucleic acid,简称BNA)是指受约束的或不能接近的核苷酸。BNA可以含有五元环、六元环、或七元环的具有“固定的”C3'-内切糖缩拢的桥联结构。通常将该桥掺入到该核糖的2'-、4'-位处以提供一个2',4'-BNA核苷酸。在一些实施方式中,BNA可以是LNA、 ENA、cET BNA等,其中,LNA如式(12)所示,ENA如式(13)所示,cET BNA如式(14)所示:Bridged Nucleic Acid (BNA) refers to nucleotides that are constrained or inaccessible. BNA can contain a five-membered ring, a six-membered ring, or a seven-membered ring with a "fixed" C3'-endosugar condensed bridge structure. The bridge is usually incorporated into the 2'-, 4'-position of the ribose to provide a 2',4'-BNA nucleotide. In some embodiments, BNA may be LNA, ENA, cET BNA, etc., where LNA is shown in formula (12), ENA is shown in formula (13), and cET BNA is shown in formula (14):
Figure PCTCN2020091489-appb-000005
Figure PCTCN2020091489-appb-000005
无环核苷酸是核苷酸的糖环被打开形成的一类核苷酸。在一些实施方式中,无环核苷酸可以是解锁核酸(UNA)或甘油核酸(GNA),其中,UNA如式(15)所示,GNA如式(16)所示:Acyclic nucleotides are a type of nucleotides formed by opening the sugar ring of nucleotides. In some embodiments, acyclic nucleotides can be unlocked nucleic acids (UNA) or glycerol nucleic acids (GNA), wherein UNA is represented by formula (15) and GNA is represented by formula (16):
Figure PCTCN2020091489-appb-000006
Figure PCTCN2020091489-appb-000006
上述式(15)和式(16)中,R选自H、OH或烷氧基(O-烷基)。In the above formula (15) and formula (16), R is selected from H, OH or alkoxy (O-alkyl).
异核苷酸是指核苷酸中碱基在核糖环上的位置发生改变而形成的化合物。在一些实施方式中,异核苷酸可以是碱基从核糖环的1'-位移动至2'-位或3'-位而形成的化合物,如式(17)或(18)所示。Isonucleotide refers to a compound formed by changing the position of the base in the nucleotide on the ribose ring. In some embodiments, the heteronucleotide may be a compound formed by moving a base from the 1'-position of the ribose ring to the 2'-position or the 3'-position, as shown in formula (17) or (18).
Figure PCTCN2020091489-appb-000007
Figure PCTCN2020091489-appb-000007
上述式(17)-式(18)化合物中,Base表示碱基,例如A、U、G、C或T;R选自H、OH、F或者如上所述的非氟基团。In the compounds of formula (17) to formula (18) above, Base represents a base, such as A, U, G, C or T; R is selected from H, OH, F or the non-fluorine group as described above.
在一些实施方式中,核苷酸类似物选自异核苷酸、LNA、ENA、cET、UNA和GNA中的一种。在一些实施方式中,每一个非氟代修饰的核苷酸均为甲氧基修饰的核苷酸,在上文和下文中,所述甲氧基修饰的核苷酸指核糖基的2'-羟基被甲氧基取代而形成的核苷酸。In some embodiments, the nucleotide analog is selected from one of heteronucleotides, LNA, ENA, cET, UNA, and GNA. In some embodiments, each non-fluorinated modified nucleotide is a methoxy-modified nucleotide. In the above and below, the methoxy-modified nucleotide refers to the 2'of the ribose group. -Nucleotides formed by the substitution of a hydroxy group with a methoxy group.
在上文及下文中,“氟代修饰的核苷酸”、“2'-氟修饰的核苷酸”、“核糖基团的2'-羟基被氟取代的核苷酸”和“具有2'-氟代核糖基的核苷酸”意义相同,均指核苷酸的2'-羟基被氟取代,而形成的具有如式(7)所示结构的化合物;“甲氧基修饰的核苷酸”、“2'-甲氧基修饰的核苷酸”、“核糖基团的2'-羟基被甲氧基取代的核苷酸”和“具有2'-甲氧基核糖基的核苷酸”意义相同,均指核苷酸核糖基团的2'-羟基被甲氧基取代而形成的具有如式(8)所示结构的化合物。In the above and below, "fluoro-modified nucleotides", "2'-fluoro-modified nucleotides", "nucleotides in which the 2'-hydroxyl group of the ribose group is substituted with fluorine" and "having 2 '-Fluoro-ribose-based nucleotides" have the same meaning, and both refer to the compound having the structure shown in formula (7) formed by replacing the 2'-hydroxyl group of the nucleotide with fluorine; "Methoxy modified core Nucleotides", "2'-methoxy-modified nucleotides", "nucleotides in which the 2'-hydroxyl group of the ribose group is substituted by a methoxy group" and "nuclei with 2'-methoxyribose groups The meaning of "nucleotide" has the same meaning, and both refer to the compound having the structure shown in formula (8) formed by replacing the 2'-hydroxyl group of the nucleotide ribose group with a methoxy group.
在一些实施方式中,本公开的siRNA是具有以下修饰的siRNA:按照5'末端到3'末端的方向,在所述正义链中,所述核苷酸序列I的第7、8、9位或者第5、7、8、9位的核苷酸为氟代修饰的核苷酸,所述正义链中其余位置的核苷酸为甲氧基修饰的核苷酸;在所述反义链中,所述核苷酸序列II的第2、6、14、16位或者第2、6、8、9、14、16位的核苷酸为氟代修饰的核苷酸,所述反义链中其余位置的核苷酸为甲氧基修饰的核苷酸。In some embodiments, the siRNA of the present disclosure is an siRNA with the following modifications: in the direction from the 5'end to the 3'end, in the sense strand, positions 7, 8, and 9 of the nucleotide sequence I Or the nucleotides at positions 5, 7, 8, and 9 are fluoro-modified nucleotides, and the nucleotides at the remaining positions in the sense strand are methoxy-modified nucleotides; in the antisense strand Wherein, the nucleotides at positions 2, 6, 14, 16 or 2, 6, 8, 9, 14, and 16 of the nucleotide sequence II are fluoro-modified nucleotides, and the antisense The nucleotides at the remaining positions in the chain are methoxy modified nucleotides.
在一些实施方式中,本公开的siRNA是具有以下修饰的siRNA:按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第5、7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、8、9、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸;In some embodiments, the siRNA of the present disclosure is an siRNA with the following modifications: in the direction from the 5'end to the 3'end, the siRNA is at positions 5, 7, 8 and 9 of nucleotide sequence I in the sense strand The nucleotides are fluoro-modified nucleotides, the nucleotides in the remaining positions of the sense strand of the siRNA are methoxy-modified nucleotides, and, in the direction from the 5'end to the 3'end, the siRNA The nucleotides at positions 2, 6, 8, 9, 14 and 16 of nucleotide sequence II in the antisense strand are fluorinated modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of siRNA are methoxy groups Modified nucleotides;
或者,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第5、7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、14和16 位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸;Or, according to the direction from the 5'end to the 3'end, the 5th, 7th, 8th and 9th nucleotides of the nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense The nucleotides at the remaining positions of the chain are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, and 14th nucleotide sequence II in the antisense strand of the siRNA And the nucleotides at position 16 are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of siRNA are methoxy-modified nucleotides;
或者,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸。Or, according to the direction from the 5'end to the 3'end, the nucleotides at positions 7, 8 and 9 of nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense strand of the siRNA The nucleotides at the remaining positions are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, 14th, and 16th nucleotide sequence II in the antisense strand of the siRNA The nucleotides at the position are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of the siRNA are methoxy-modified nucleotides.
在一些实施方式中,本公开提供的siRNA为表1a-1f中列出的siPCSKa1-M1、siPCSKa1-M2、siPCSKa1-M3、siPCSKa2-M1、siPCSKa2-M2、siPCSKa2-M3、siPCSKb1-M1、siPCSKb1-M2、siPCSKb1-M3、siPCSKb2-M1、siPCSKb2-M2、siPCSKb2-M3、siPCSKc1-M1、siPCSKc1-M2、siPCSKc1-M3、siPCSKc2-M1、siPCSKc2-M2、siPCSKc2-M3、siPCSKd1-M1、siPCSKd1-M2、siPCSKd1-M3、siPCSKd2-M1、siPCSKd2-M2、siPCSKd2-M3、siPCSKe1-M1、siPCSKe1-M2、siPCSKe1-M3、siPCSKe2-M1、siPCSKe2-M2、siPCSKe2-M3、siPCSKf1-M1、siPCSKf1-M2、siPCSKf1-M3、siPCSKf2-M1、siPCSKf2-M2或siPCSKf2-M3中的任意一种。In some embodiments, the siRNA provided in the present disclosure is siPCSKa1-M1, siPCSKa1-M2, siPCSKa1-M3, siPCSKa2-M1, siPCSKa2-M2, siPCSKa2-M3, siPCSKb1-M1, siPCSKb1- M2, siPCSKb1-M3, siPCSKb2-M1, siPCSKb2-M2, siPCSKb2-M3, siPCSKc1-M1, siPCSKc1-M2, siPCSKc1-M3, siPCSKc2-M1, siPCSKc2-M2, siPCSKc2-M3, siPCSKd1-M1, siPCSKd1-M2 siPCSKd1-M3, siPCSKd2-M1, siPCSKd2-M2, siPCSKd2-M3, siPCSKe1-M1, siPCSKe1-M2, siPCSKe1-M3, siPCSKe2-M1, siPCSKe2-M2, siPCSKe2-M3, siPCSKf1-M1, siPCSKf1-M2, siPCSKf1- Any one of M3, siPCSKf2-M1, siPCSKf2-M2, or siPCSKf2-M3.
具有上述修饰的siRNA不仅成本低,而且可使血液中的核糖核酸酶不易切割核酸,由此增加核酸的稳定性,使核酸具有更强的抵抗核酸酶水解的性能。同时,上述修饰的siRNA还具有较高的抑制靶mRNA的活性。The modified siRNA is not only low in cost, but also makes the ribonuclease in the blood difficult to cut the nucleic acid, thereby increasing the stability of the nucleic acid and making the nucleic acid more resistant to nuclease hydrolysis. At the same time, the above-mentioned modified siRNA also has a higher activity of inhibiting target mRNA.
在一些实施方式中,本公开提供的siRNA的正义链和反义链中至少一条单链的磷酸-糖骨架中的磷酸酯基中的至少一部分为具有修饰基团的磷酸酯基。在一些实施方式中,具有修饰基团的磷酸酯基为磷酸酯基中的磷酸二酯键中的至少一个氧原子被硫原子取代而形成的硫代磷酸酯基;在一些实施方式中,所述具有修饰基团的磷酸酯基为具有如式(1)所示结构的硫代磷酸酯基:In some embodiments, at least a part of the phosphate groups in the phosphate-sugar backbone of at least one single strand in the sense strand and the antisense strand of the siRNA provided in the present disclosure is a phosphate group with a modification group. In some embodiments, the phosphate ester group with a modification group is a phosphorothioate group formed by replacing at least one oxygen atom in the phosphodiester bond in the phosphate ester group with a sulfur atom; in some embodiments, the The phosphate group with a modified group is a phosphorothioate group with a structure shown in formula (1):
Figure PCTCN2020091489-appb-000008
Figure PCTCN2020091489-appb-000008
这种修饰能稳定siRNA的双链结构,保持碱基配对的高特异性和高亲和力。This modification can stabilize the double-stranded structure of the siRNA and maintain the high specificity and affinity of base pairing.
在一些实施方式中,本公开提供的siRNA中,硫代磷酸酯基连接存在于由以下位置组成的组中的至少一处:正义链或反义链任意一端的第一个和第二个核苷酸之间;正义链或反义链任意一端的第二个和第三个核苷酸之间;或上述的任意组合。在一些实施方式中,硫代磷酸酯基连接存在于除正义链5'末端以外的全部上述位置处。在一些实施方式中,硫代磷酸酯基连接存在于除正义链3'末端以外的全部上述位置处。在一些实施方式中,硫代磷酸酯基连接存在于以下位置中的至少一处:In some embodiments, in the siRNA provided by the present disclosure, the phosphorothioate group linkage exists in at least one of the following positions: the first and second cores of either end of the sense strand or the antisense strand Between nucleotides; between the second and third nucleotides at either end of the sense strand or the antisense strand; or any combination of the above. In some embodiments, the phosphorothioate group linkages are present at all the above positions except the 5'end of the sense chain. In some embodiments, the phosphorothioate group linkages are present at all the above positions except the 3'end of the sense chain. In some embodiments, the phosphorothioate group linkage is present in at least one of the following positions:
所述正义链的5'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 5'end of the sense strand;
所述正义链的5'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 5'end of the sense strand;
所述正义链的3'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 3'end of the sense strand;
所述正义链的3'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 3'end of the sense strand;
所述反义链的5'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 5'end of the antisense strand;
所述反义链的5'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 5'end of the antisense strand;
所述反义链的3'末端第1个核苷酸和第2个核苷酸之间;以及Between the first nucleotide and the second nucleotide of the 3'end of the antisense strand; and
所述反义链的3'末端第2个核苷酸和第3个核苷酸之间。Between the second nucleotide and the third nucleotide of the 3'end of the antisense strand.
在一些实施方式中,本公开提供的siRNA为表1a-1f中列出的siPCSKa1-M1S、siPCSKa1-M2S、siPCSKa1-M3S、siPCSKa2-M1S、siPCSKa2-M2S、siPCSKa2-M3S、siPCSKb1-M1S、siPCSKb1-M2S、siPCSKb1-M3S、siPCSKb2-M1S、siPCSKb2-M2S、siPCSKb2-M3S、siPCSKc1-M1S、siPCSKc1-M2S、siPCSKc1-M3S、siPCSKc2-M1S、siPCSKc2-M2S、siPCSKc2-M3S、siPCSKd1-M1S、siPCSKd1-M2S、siPCSKd1-M3S、siPCSKd2-M1S、siPCSKd2-M2S、siPCSKd2-M3S、siPCSKe1-M1S、siPCSKe1-M2S、siPCSKe1-M3S、siPCSKe2-M1S、siPCSKe2-M2S、siPCSKe2-M3S、siPCSKf1-M1S、siPCSKf1-M2S、siPCSKf1-M3S、siPCSKf2-M1S、siPCSKf2-M2S或siPCSKf2-M3S中的任意一种。In some embodiments, the siRNA provided in the present disclosure is siPCSKa1-M1S, siPCSKa1-M2S, siPCSKa1-M3S, siPCSKa2-M1S, siPCSKa2-M2S, siPCSKa2-M3S, siPCSKb1-M1S, siPCSKb1- listed in Tables 1a-1f. M2S, siPCSKb1-M3S, siPCSKb2-M1S, siPCSKb2-M2S, siPCSKb2-M3S, siPCSKc1-M1S, siPCSKc1-M2S, siPCSKc1-M3S, siPCSKc2-M1S, siPCSKc2-M2S, siPCSKc2-M3SK1-M1S, siPCSK siPCSKd1-M3S, siPCSKd2-M1S, siPCSKd2-M2S, siPCSKd2-M3S, siPCSKe1-M1S, siPCSKe1-M2S, siPCSKe1-M3S, siPCSKe2-M1S, siPCSKe2-M2S, siPCSKe2-M3S, siPCSK1S, siPCSKfSKfSK1-M3S Any one of M3S, siPCSKf2-M1S, siPCSKf2-M2S or siPCSKf2-M3S.
在一些实施方式中,所述siRNA反义链的5'末端核苷酸为5'-磷酸核苷酸或5'-磷酸类似物修饰的核苷酸。In some embodiments, the 5'terminal nucleotide of the siRNA antisense strand is a 5'-phosphate nucleotide or a 5'-phosphate analog modified nucleotide.
常用的所述5'-磷酸核苷酸或5'-磷酸类似物修饰的核苷酸是本领域技术人员所公知的,如5'-磷酸核苷酸可具有如下结构:The commonly used 5'-phosphate nucleotides or 5'-phosphate analog modified nucleotides are well known to those skilled in the art, for example, 5'-phosphate nucleotides may have the following structure:
Figure PCTCN2020091489-appb-000009
Figure PCTCN2020091489-appb-000009
再如,Anastasia Khvorova and Jonathan K.Watts,The chemical evolution of oligonucleotide therapies of clinical utility.Nature Biotechnology,2017,35(3):238-48中公开了如下4种5'-磷酸类似物修饰的核苷酸:For another example, Anastasia Khvorova and Jonathan K. Watts, The chemical evolution of oligonucleotide therapies of clinical utility. Nature Biotechnology, 2017, 35(3): 238-48 discloses the following 4 kinds of 5'-phosphate analog modified nucleosides acid:
Figure PCTCN2020091489-appb-000010
Figure PCTCN2020091489-appb-000010
其中,R选自H、OH、甲氧基、氟;Base表示碱基,选自A、U、C、G或T。Wherein, R is selected from H, OH, methoxy, fluorine; Base represents a base, selected from A, U, C, G or T.
在一些实施方式中,5'-磷酸核苷酸为式(2)所示的含有5'-磷酸的核苷酸,5'-磷酸类似物修饰的核苷酸为含有乙烯基磷酸酯(5'-(E)-vinylphosphonate,E-VP)修饰的核苷酸,如式(3)所示,或者为硫代磷酸酯修饰的核苷酸,如式(5)所示。In some embodiments, the 5'-phosphate nucleotides are 5'-phosphate-containing nucleotides represented by formula (2), and the 5'-phosphate analog modified nucleotides are those containing vinyl phosphate (5 '-(E)-vinylphosphonate, E-VP) modified nucleotides, as shown in formula (3), or phosphorothioate modified nucleotides, as shown in formula (5).
在一些实施方式中,本公开提供的siRNA为表1a-1f中列出的siPCSKa1-M1P1、siPCSKa1-M2P1、siPCSKa1-M3P1、siPCSKa2-M1P1、siPCSKa2-M2P1、siPCSKa2-M3P1、siPCSKb1-M1P1、siPCSKb1-M2P1、siPCSKb1-M3P1、siPCSKb2-M1P1、siPCSKb2-M2P1、siPCSKb2-M3P1、siPCSKc1-M1P1、siPCSKc1-M2P1、siPCSKc1-M3P1、siPCSKc2-M1P1、siPCSKc2-M2P1、siPCSKc2-M3P1、siPCSKd1-M1P1、siPCSKd1-M2P1、siPCSKd1-M3P1、siPCSKd2-M1P1、siPCSKd2-M2P1、siPCSKd2-M3P1、siPCSKe1-M1P1、siPCSKe1-M2P1、siPCSKe1-M3P1、siPCSKe2-M1P1、siPCSKe2-M2P1、siPCSKe2-M3P1、siPCSKf1-M1P1、siPCSKf1-M2P1、siPCSKf1-M3P1、siPCSKf2-M1P1、siPCSKf2-M2P1、siPCSKf2-M3P1、siPCSKa1-M1SP1、siPCSKa1-M2SP1、siPCSKa1-M3SP1、siPCSKa2-M1SP1、siPCSKa2-M2SP1、siPCSKa2-M3SP1、siPCSKb1-M1SP1、siPCSKb1-M2SP1、siPCSKb1-M3SP1、siPCSKb2-M1SP1、siPCSKb2-M2SP1、siPCSKb2-M3SP1、siPCSKc1-M1SP1、siPCSKc1-M2SP1、siPCSKc1-M3SP1、siPCSKc2-M1SP1、siPCSKc2-M2SP1、siPCSKc2-M3SP1、siPCSKd1-M1SP1、siPCSKd1-M2SP1、siPCSKd1-M3SP1、siPCSKd2-M1SP1、siPCSKd2-M2SP1、siPCSKd2-M3SP1、siPCSKe1-M1SP1、siPCSKe1-M2SP1、siPCSKe1-M3SP1、siPCSKe2-M1SP1、siPCSKe2-M2SP1、siPCSKe2-M3SP1、siPCSKf1-M1SP1、siPCSKf1-M2SP1、siPCSKf1-M3SP1、siPCSKf2-M1SP1、siPCSKf2-M2SP1、siPCSKf2-M3SP1中的任意一种。In some embodiments, the siRNA provided in the present disclosure is siPCSKa1-M1P1, siPCSKa1-M2P1, siPCSKa1-M3P1, siPCSKa2-M1P1, siPCSKa2-M2P1, siPCSKa2-M3P1, siPCSKb1-M1P1, siPCSKb1- M2P1, siPCSKb1-M3P1, siPCSKb2-M1P1, siPCSKb2-M2P1, siPCSKb2-M3P1, siPCSKc1-M1P1, siPCSKc1-M2P1, siPCSKc1-M3P1, siPCSKc2-M1P1, siPCSKc2-M2P1, siPCSKc2-d1-M2P1, siPCSKc2-d1-M2P1, siPCSKc1-M3P1 siPCSKd1-M3P1, siPCSKd2-M1P1, siPCSKd2-M2P1, siPCSKd2-M3P1, siPCSKe1-M1P1, siPCSKe1-M2P1, siPCSKe1-M3P1, siPCSKe2-M1P1, siPCSKe2-M2P1, siPCSKe2-M3P1, siPCSKfSK1 M3P1, siPCSKf2-M1P1, siPCSKf2-M2P1, siPCSKf2-M3P1, siPCSKa1-M1SP1, siPCSKa1-M2SP1, siPCSKa1-M3SP1, siPCSKa2-M1SP1, siPCSKa2-M2SP1, siPCSKa2-M3SP1, siPCSKb1-M1SP1, siPCSK1 siPCSKb2-M1SP1, siPCSKb2-M2SP1, siPCSKb2-M3SP1, siPCSKc1-M1SP1, siPCSKc1-M2SP1, siPCSKc1-M3SP1, siPCSKc2-M1SP1, siPCSKc2-M2SP1, siPCSKc2-M3SP1, siPCSKd1-M1SP1, siPCSKd1-M1SP1, siPCSKd1-M1SP1 M1SP1, siPCSKd2-M2SP1, siPCSKd2-M3SP1, siPCSKe1-M1SP1, siPCSKe1-M2SP1, siPCSKe1-M3SP1, siPCSKe2-M1SP1, siPCSKe2-M2SP1, siPCSKe2-M3SP1, siPCSKf1-M1SP1 Any one of siPCSKf1-M2SP1, siPCSKf1-M3SP1, siPCSKf2-M1SP1, siPCSKf2-M2SP1, siPCSKf2-M3SP1.
第七种siRNASeventh siRNA
按照本公开,所述siRNA可以是第七种siRNA。According to the present disclosure, the siRNA may be a seventh siRNA.
所述第七种siRNA含有正义链和反义链,所述第七种siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,其中,所述核苷酸序列I与SEQ ID NO:399所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:400所示的核苷酸序列长度相等,且不多于3个核苷酸差异:The seventh siRNA contains a sense strand and an antisense strand, each nucleotide in the seventh siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 399 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 400 The length is equal, and no more than 3 nucleotide differences:
5'-AGACCUGUUUUGCUUUUGZ 25-3'(SEQ ID NO:399); 5'-AGACCUGUUUUGCUUUUGZ 25 -3' (SEQ ID NO: 399);
5'-Z 26CAAAAGCAAAACAGGUCU-3'(SEQ ID NO:400), 5'-Z 26 CAAAAGCAAAACAGGUCU-3' (SEQ ID NO: 400),
其中,Z 25为U,Z 26为A,所述核苷酸序列I中包含位置对应于Z 25的核苷酸Z 27,所述核苷酸序列II中包含位置对应于Z 26的核苷酸Z 28,所述Z 28是所述反义链5'末端的第一个核苷酸。 Wherein, Z 25 is U, Z 26 is A, the nucleotide sequence I contains the nucleotide Z 27 whose position corresponds to Z 25 , and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 26 Acid Z 28 , the Z 28 is the first nucleotide at the 5'end of the antisense strand.
在一些实施方式中,所述正义链仅包含核苷酸序列I,所述反义链仅包含核苷酸序列II。In some embodiments, the sense strand only includes nucleotide sequence I, and the antisense strand only includes nucleotide sequence II.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:399所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:400所示的核苷酸序列之间不多于1个核苷酸差异。In some embodiments, there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399, and/or the nucleotide sequence II and SEQ ID NO: No more than 1 nucleotide difference between the nucleotide sequences shown in 400.
在一些实施方式中,所述核苷酸序列II与SEQ ID NO:400所示的核苷酸序列之间的核苷酸差异包括Z 28位置处的差异,且Z 28选自G、U或C。在一些实施方式中,所述核苷酸差异为Z 28位置处的差异,Z 28选自G、U或C。在一些实施方式中,Z 27是与Z 28互补的核苷酸。 In some embodiments, the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 400 includes the difference at position Z 28 , and Z 28 is selected from G, U or C. In some embodiments, the nucleotide difference as a difference at a position of Z 28, Z 28 is selected from G, U or C. In some embodiments, Z 27 is a nucleotide that is complementary to Z 28 .
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:399所示的核苷酸序列之间的核苷酸差异包括从核苷酸序列I的5'端起算的第9个核苷酸Z的差异,且Z为dT。In some embodiments, the nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399 includes the ninth nucleus from the 5'end of the nucleotide sequence I The difference of glycidyl acid Z, and Z is dT.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:399所示的核苷酸序列之间的核苷酸差异包括Z 27位置处的差异,且Z 27选自A、G或C。 In some embodiments, the nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399 includes the difference at position Z 27 , and Z 27 is selected from A, G or C.
在一些实施方式中,所述核苷酸序列I与SEQ ID NO:399所示的核苷酸序列之间具有2个核苷酸差异,且所述核苷酸序列I与所述核苷酸序列II完全反向互补,其中所述2个核苷酸差异是Z和Z 27位置处的差异,且Z为dT,Z 27选自A、G或C。 In some embodiments, there are 2 nucleotide differences between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 399, and the nucleotide sequence I and the nucleotide sequence Sequence II is fully reverse complementary, wherein the two nucleotide differences are the difference at positions Z and Z 27 , and Z is dT, and Z 27 is selected from A, G, or C.
具有上述核苷酸差异的siRNA具有较高的siRNA的靶mRNA抑制能力,而这些包含核苷酸差异的siRNA也在本公开的保护范围之内。The siRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of the siRNA, and these siRNAs containing the nucleotide differences are also within the protection scope of the present disclosure.
在一些实施方式中,核苷酸序列I是SEQ ID NO:401所示的核苷酸序列,核苷酸序列II是SEQ ID NO:402所示的核苷酸序列:In some embodiments, the nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 401, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 402:
5'-AGACCUGUdTUUGCUUUUGZ 27-3'(SEQ ID NO:401); 5'-AGACCUGUdTUUGCUUUUGZ 27 -3' (SEQ ID NO: 401);
5'-Z 28CAAAAGCAAAACAGGUCU-3'(SEQ ID NO:402), 5'-Z 28 CAAAAGCAAAACAGGUCU-3' (SEQ ID NO: 402),
其中,dT为胸腺嘧啶脱氧核苷酸,所述Z 28是反义链5'末端的第一个核苷酸,Z 27选自A、U、G或C,并且Z 28是与Z 27互补的核苷酸;在一些实施方式中,Z 27为U,Z 28为A。 Wherein, dT is a thymine deoxynucleotide, the Z 28 is the first nucleotide at the 5'end of the antisense strand, Z 27 is selected from A, U, G or C, and Z 28 is complementary to Z 27 In some embodiments, Z 27 is U and Z 28 is A.
在一些实施方式中,对于所述第七种siRNA,所述siRNA的正义链含有如SEQ ID NO:403所示的核苷酸序列,所述反义链含有如SEQ ID NO:404所示的核苷酸序列:In some embodiments, for the seventh siRNA, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 403, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 404. Nucleotide sequence:
5'-AGACCUGUdTUUGCUUUUGZ 27-3'(SEQ ID NO:403); 5'-AGACCUGUdTUUGCUUUUGZ 27 -3' (SEQ ID NO: 403);
5'-Z 28CAAAAGCAAAACAGGUCUAG-3'(SEQ ID NO:404); 5'-Z 28 CAAAAGCAAAACAGGUCUAG-3' (SEQ ID NO: 404);
或者,所述siRNA的正义链含有如SEQ ID NO:405所示的核苷酸序列,所述反义链含有如SEQ ID NO:406所示的核苷酸序列:Alternatively, the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 405, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 406:
5'-CUAGACCUGUdTUUGCUUUUGZ 27-3'(SEQ ID NO:405); 5'-CUAGACCUGUdTUUGCUUUUGZ 27 -3' (SEQ ID NO: 405);
5'-Z 28CAAAAGCAAAACAGGUCUAGAA-3'(SEQ ID NO:406); 5'-Z 28 CAAAAGCAAAACAGGUCUAGAA-3' (SEQ ID NO: 406);
在一些实施方式中,本公开所述siRNA为表1g中列出的siPCSKg3或siPCSKg4。In some embodiments, the siRNA described in the present disclosure is siPCSKg3 or siPCSKg4 listed in Table 1g.
在一些实施方式中,上述Z和/或Z 27位置处有核苷酸差异的siRNA中,至少部分核苷酸为修饰的核苷酸,所述修饰的核苷酸为氟代修饰的核苷酸或非氟代修饰的核苷酸,所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,并且,按照5'末端到3'末端的方向,所述核苷酸序列II中至少第2、6、14、16位的核苷酸为氟代修饰的核苷酸。 In some embodiments, among the above-mentioned siRNAs with nucleotide differences at positions Z and/or Z 27 , at least part of the nucleotides are modified nucleotides, and the modified nucleotides are fluoro-modified nucleosides. Acid or non-fluorinated modified nucleotides, the fluorinated modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and, in the direction from the 5'end to the 3'end, the nuclear At least the nucleotides at positions 2, 6, 14, and 16 in the nucleotide sequence II are fluorinated modified nucleotides.
在一些实施方式中,本公开提供的siRNA为表1g中列出的siPCSKg3-M4、siPCSKg4-M5、siPCSKg3-M4S、siPCSKg4-M5S、siPCSKg3-M4P1、siPCSKg4-M5P1、siPCSKg3-M4SP1或siPCSKg4-M5SP1中的任意一种。In some embodiments, the siRNA provided in the present disclosure is siPCSKg3-M4, siPCSKg4-M5, siPCSKg3-M4S, siPCSKg4-M5S, siPCSKg3-M4P1, siPCSKg4-M5P1, siPCSKg3-M4SP1, or siPCSKg4-M5SP1 listed in Table 1g. Any kind of.
本公开的发明人意外发现,本公开提供的siRNA不仅具有显著增强的血浆和溶酶体稳定性,还具有较高的靶mRNA抑制活性。The inventors of the present disclosure unexpectedly discovered that the siRNA provided by the present disclosure not only has significantly enhanced plasma and lysosome stability, but also has higher target mRNA inhibitory activity.
本公开提供的siRNA可以通过本领域常规的siRNA制备方法(例如固相合成和液相合成的方法)得到。其中,固相合成已经有商业化订制服务。可以通过使用具有相应修饰的核苷单体来将修饰的核苷酸基团引入本公开所述的siRNA中,制备具有相应修饰的核苷单体的方法及将修饰的核苷酸基团引入siRNA的方法也是本领域技术人员所熟知的。The siRNA provided in the present disclosure can be obtained by conventional siRNA preparation methods in the art (for example, solid-phase synthesis and liquid-phase synthesis). Among them, solid phase synthesis already has commercial customized services. The modified nucleotide groups can be introduced into the siRNA described in the present disclosure by using nucleoside monomers with corresponding modifications, the method for preparing nucleoside monomers with corresponding modifications and the introduction of modified nucleotide groups The siRNA method is also well known to those skilled in the art.
药物组合物Pharmaceutical composition
本公开提供了一种药物组合物,所述药物组合物含有如上所述的siRNA作为活性成分和药学上可接受的载体。The present disclosure provides a pharmaceutical composition containing the siRNA as described above as an active ingredient and a pharmaceutically acceptable carrier.
所述药学上可接受的载体可以是siRNA给药领域常规使用的载体,例如但不限于磁性纳米粒(magnetic nanoparticles,如基于Fe 3O 4或Fe 2O 3的纳米粒)、碳纳米管(carbon nanotubes)、介孔硅(mesoporous silicon)、磷酸钙纳米粒(calcium phosphate nanoparticles)、聚乙烯亚胺(polyethylenimine,PEI)、聚酰胺型树形高分子(polyamidoamine(PAMAM)dendrimer)、聚赖氨酸(poly(L-lysine),PLL)、壳聚糖(chitosan)、1,2-二油酰基-3-三甲铵丙烷(1,2-dioleoyl-3-trimethylammonium-propane,DOTAP)、聚D型或L型乳酸/羟基乙酸共聚物(poly(D&L-lactic/glycolic acid)copolymer,PLGA)、聚(氨乙基乙撑磷酸酯)(poly(2-aminoethyl ethylene phosphate),PPEEA)和聚(甲基丙烯酸-N,N-二甲氨基乙酯)(poly(2-dimethylaminoethyl methacrylate),PDMAEMA)以及它们的衍生物中的一种或多种。 The pharmaceutically acceptable carrier may be a carrier conventionally used in the field of siRNA administration, such as but not limited to magnetic nanoparticles (magnetic nanoparticles, such as nanoparticles based on Fe 3 O 4 or Fe 2 O 3 ), carbon nanotubes ( carbon nanotubes), mesoporous silicon, calcium phosphate nanoparticles (calcium phosphate nanoparticles), polyethylenimine (PEI), polyamidoamine (PAMAM) dendrimer, polylysine Acid (poly(L-lysine), PLL), chitosan (chitosan), 1,2-dioleoyl-3-trimethylammonium-propane (1,2-dioleoyl-3-trimethylammonium-propane, DOTAP), poly D Type or L type lactic acid/glycolic acid copolymer (poly(D&L-lactic/glycolic acid) copolymer, PLGA), poly(2-aminoethyl ethylene phosphate) (PPEEA) and poly( One or more of poly(2-dimethylaminoethyl methacrylate) (PDMAEMA) and their derivatives.
所述药物组合物中,对siRNA和药学上可接受的载体的含量没有特别要求,可以是各组分常规的含量。在一些实施方式中,siRNA与药学上可接受的载体的重量比可以为1:(1-500),在一些的实施方式中,上述重量比为1:(1-50)。In the pharmaceutical composition, there is no special requirement for the content of siRNA and pharmaceutically acceptable carrier, and may be the conventional content of each component. In some embodiments, the weight ratio of siRNA to the pharmaceutically acceptable carrier may be 1:(1-500), and in some embodiments, the weight ratio may be 1:(1-50).
在一些实施方式中,所述药物组合物中,还可以包含药学上可接受的其它辅料,该辅料可以为本领域常规采用的各种制剂或化合物的一种或多种。例如,所述药学上可接受的其它辅料可以包括pH缓冲液、保护剂和渗透压调节剂中的至少一种。In some embodiments, the pharmaceutical composition may also contain other pharmaceutically acceptable auxiliary materials, which may be one or more of various formulations or compounds conventionally used in the art. For example, the pharmaceutically acceptable other auxiliary materials may include at least one of a pH buffer, a protective agent, and an osmotic pressure regulator.
所述pH缓冲液可以为pH值7.5-8.5的三羟甲基胺基甲烷盐酸盐缓冲液和/或pH值5.5-8.5的磷酸盐缓冲液,例如可以为pH值5.5-8.5的磷酸盐缓冲液。The pH buffer can be a tris hydrochloride buffer with a pH of 7.5-8.5 and/or a phosphate buffer with a pH of 5.5-8.5, for example, it can be a phosphate with a pH of 5.5-8.5 Buffer.
所述保护剂可以为肌醇、山梨醇、蔗糖、海藻糖、甘露糖、麦芽糖、乳糖和葡萄糖中的至少一种。以所述药物组合物的总重量为基准,所述保护剂的含量可以为0.01-30重量%。The protective agent may be at least one of inositol, sorbitol, sucrose, trehalose, mannose, maltose, lactose, and glucose. Based on the total weight of the pharmaceutical composition, the content of the protective agent may be 0.01-30% by weight.
所述渗透压调节剂可以为氯化钠和/或氯化钾。所述渗透压调节剂的含量使所述药物组合物的渗透压为200-700毫渗摩尔/千克(mOsm/kg)。根据所需渗透压,本领域技术人员可以容易地确定所述渗透压调节剂的含量。The osmotic pressure regulator may be sodium chloride and/or potassium chloride. The content of the osmotic pressure regulator is such that the osmotic pressure of the pharmaceutical composition is 200-700 millosmole per kilogram (mOsm/kg). According to the required osmotic pressure, those skilled in the art can easily determine the content of the osmotic pressure regulator.
在一些实施方式中,所述药物组合物可以为液体制剂,例如注射液;也可以为冻干粉针剂,实施给药时与液体辅料混合,配制成液体制剂。所述液体制剂可以但不限于用于皮下、肌肉或静脉注射给药,也可以但不限于通过喷雾给药到肺脏、或通过喷雾经肺脏给药到其它脏器组织(如肝脏)。在一些实施方式中,所述药物组合物用于静脉注射给药。In some embodiments, the pharmaceutical composition may be a liquid preparation, such as an injection, or a lyophilized powder injection, which is mixed with liquid excipients during administration to prepare a liquid preparation. The liquid formulation can be, but not limited to, administered by subcutaneous, intramuscular or intravenous injection, and can also be, but not limited to, administered to the lungs by spraying, or administered to other organs and tissues (such as liver) by spraying through the lungs. In some embodiments, the pharmaceutical composition is for intravenous administration.
在一些实施方式中,所述药物组合物可以为脂质体制剂的形式。在一些实施方式中,所述脂质体制剂中使用的药学上可接受的载体包含含胺的转染化合物(下文也可将其称为有机胺)、辅助脂质和/或聚乙二醇化脂质。其中,所述有机胺、辅助脂质和聚乙二醇化脂质可分别选自于CN103380113A(通过引用的方式将其整体并入本文)中所描述的含胺的转染化合物或其药学上可接受的盐或衍生物、辅助脂质和聚乙二醇化脂质中的一种或多种。In some embodiments, the pharmaceutical composition may be in the form of a liposome formulation. In some embodiments, the pharmaceutically acceptable carrier used in the liposome formulation contains an amine-containing transfection compound (hereinafter may also be referred to as an organic amine), auxiliary lipids and/or PEGylation Lipid. Wherein, the organic amine, auxiliary lipid and pegylated lipid may be selected from the amine-containing transfection compound described in CN103380113A (incorporated in its entirety by reference) or its pharmaceutically acceptable One or more of the accepted salt or derivative, auxiliary lipid, and pegylated lipid.
在一些实施方式中,所述有机胺可为CN103380113A中描述的如式(201)所示的化合物或其药学上可接受的盐:In some embodiments, the organic amine may be a compound represented by formula (201) described in CN103380113A or a pharmaceutically acceptable salt thereof:
Figure PCTCN2020091489-appb-000011
Figure PCTCN2020091489-appb-000011
其中:among them:
每个X 101或X 102各自独立地是O、S、N-A或C-A,其中A是氢或C1-C20烃链; Each X 101 or X 102 is independently O, S, NA or CA, where A is hydrogen or a C1-C20 hydrocarbon chain;
每个Y 101或Z 101各自独立地是C=O、C=S、S=O、CH-OH或SO 2Each Y 101 or Z 101 is independently C=O, C=S, S=O, CH-OH or SO 2 ;
每个R 101、R 102、R 103、R 104、R 105、R 106或R 107各自独立地是氢,环状或无环的、被取代的或未被取代的、支链或直链脂族基团,环状或无环的、被取代的或未被取代的、支链或直链杂脂族基团,被取代的或未被取代的、支链或直链酰基,被取代的或未被取代的、支链或直链芳基,被取代的或未被取代的、支链或直链杂芳基; Each R 101 , R 102 , R 103 , R 104 , R 105 , R 106 or R 107 is independently hydrogen, cyclic or acyclic, substituted or unsubstituted, branched or straight chain lipid Group group, cyclic or acyclic, substituted or unsubstituted, branched or straight chain heteroaliphatic group, substituted or unsubstituted, branched or straight chain acyl group, substituted Or unsubstituted, branched or straight chain aryl, substituted or unsubstituted, branched or straight chain heteroaryl;
x是1-10的整数;x is an integer of 1-10;
n是1-3的整数,m是0-20的整数,p是0或1;其中,如果m=p=0,则R 102是氢; n is an integer of 1-3, m is an integer of 0-20, and p is 0 or 1; where, if m=p=0, R 102 is hydrogen;
并且,如果n或m中的至少一个是2,那么R 103和在式(201)中的氮形成如式(202)或式(203)所示的结构: And, if at least one of n or m is 2, then R 103 and the nitrogen in formula (201) form a structure as shown in formula (202) or formula (203):
Figure PCTCN2020091489-appb-000012
Figure PCTCN2020091489-appb-000012
其中,g、e或f各自独立地是1-6的整数,“HCC”代表烃链,且每个*N代表式(201)中的氮原子。Wherein, g, e, or f are each independently an integer from 1 to 6, "HCC" represents a hydrocarbon chain, and each *N represents a nitrogen atom in formula (201).
在一些实施方式中,R 103是多胺。在其它实施方式中,R 103是缩酮。在一些实施方式中,在式(201)中的R 101和R 102中的每一个独立地是任意的被取代的或未被取代的、支链或直链烷基或烯基,所述烷基或烯基具有3至约20个碳原子,诸如8至约18个碳原子,和0至4个双键,诸如0至2个双键。 In some embodiments, R 103 is a polyamine. In other embodiments, R 103 is a ketal. In some embodiments, each of R 101 and R 102 in formula (201) is independently any substituted or unsubstituted, branched or straight chain alkyl or alkenyl group. The radical or alkenyl group has 3 to about 20 carbon atoms, such as 8 to about 18 carbon atoms, and 0 to 4 double bonds, such as 0 to 2 double bonds.
在一些实施方式中,如果n和m中的每一个独立地具有1或3的值,那么R 103可以是下述式(204)-式(213)中的任一个: In some embodiments, if each of n and m independently has a value of 1 or 3, then R 103 can be any of the following formulas (204)-(213):
Figure PCTCN2020091489-appb-000013
Figure PCTCN2020091489-appb-000013
其中,式(204)-式(213)中,g、e和f各自独立地是1-6的整数,每个“HCC”代表烃链,且每个*显示R 103与在式(201)中的氮原子的可能连接点,其中在任意*位置上的每个H可以被替换以实现与在式(201)中的氮原子的连接。 Among them, in formulas (204)-(213), g, e and f are each independently an integer from 1 to 6, each "HCC" represents a hydrocarbon chain, and each * shows R 103 and the formula (201) The possible connection points of the nitrogen atom in where each H at any * position can be replaced to achieve the connection with the nitrogen atom in formula (201).
其中,式(201)所示化合物可以根据CN103380113A中的描述制备。Among them, the compound represented by formula (201) can be prepared according to the description in CN103380113A.
在一些实施方式中,所述有机胺为如式(214)所示的有机胺和/或如式(215)所示的有机胺:In some embodiments, the organic amine is an organic amine represented by formula (214) and/or an organic amine represented by formula (215):
Figure PCTCN2020091489-appb-000014
Figure PCTCN2020091489-appb-000014
所述辅助脂质为胆固醇、胆固醇的类似物和/或胆固醇的衍生物;The auxiliary lipid is cholesterol, cholesterol analogues and/or cholesterol derivatives;
所述聚乙二醇化脂质为1,2-二棕榈酰胺-sn-甘油-3-磷脂酰乙醇胺-N-[甲氧基(聚乙二醇)]-2000。The pegylated lipid is 1,2-dipalmitamide-sn-glycerol-3-phosphatidylethanolamine-N-[methoxy(polyethylene glycol)]-2000.
在一些实施方式中,所述药物组合物中,所述有机胺、所述辅助脂质和所述聚乙二醇化脂质三者之间的摩尔比为(19.7-80):(19.7-80):(0.3-50),例如可以为(50-70):(20-40):(3-20)。In some embodiments, in the pharmaceutical composition, the molar ratio between the organic amine, the auxiliary lipid and the pegylated lipid is (19.7-80): (19.7-80 ): (0.3-50), for example (50-70): (20-40): (3-20).
在一些实施方式中,由本公开的siRNA与上述含胺的转染试剂形成的药物组合物颗粒具有约30nm至约200nm的平均直径,通常为约40nm至约135nm,更通常地,该脂质体颗粒的平均直径是约50nm至约120nm、约50nm至约100nm、约60nm至约90nm或约70nm至约90nm,例如,该脂质体颗粒的平均直径是约30、40、50、60、70、75、80、85、90、100、110、120、130、140、150或160nm。In some embodiments, the particles of the pharmaceutical composition formed by the siRNA of the present disclosure and the above-mentioned amine-containing transfection reagent have an average diameter of about 30 nm to about 200 nm, usually about 40 nm to about 135 nm, and more generally, the liposome The average diameter of the particles is about 50 nm to about 120 nm, about 50 nm to about 100 nm, about 60 nm to about 90 nm, or about 70 nm to about 90 nm, for example, the average diameter of the liposome particles is about 30, 40, 50, 60, 70 , 75, 80, 85, 90, 100, 110, 120, 130, 140, 150 or 160nm.
在一些实施方式中,由本公开的siRNA与上述含胺的转染试剂形成的药物组合物中,siRNA与全部脂质(例如有机胺、辅助脂质和/或聚乙二醇化脂质)的重量比(重量/重量比)在从约1:1至约1:50、从约1:1至约1:30、从约1:3至约1:20、从约1:4至约1:18、从约1:5至约1:17、从约1:5至约1:15、从约1:5至约1:12、从约1:6至约1:12或从约1:6至约1:10的范围内,例如,本公开的siRNA与全部脂质的重量比为约1:5、1:6、1:7、1:8、1:9、1:10、1:11、1:12、1:13、1:14、1:15、1:16、1:17或1:18。In some embodiments, in the pharmaceutical composition formed by the siRNA of the present disclosure and the above-mentioned amine-containing transfection reagent, the weight of the siRNA and all lipids (such as organic amines, auxiliary lipids and/or PEGylated lipids) The ratio (weight/weight ratio) is from about 1:1 to about 1:50, from about 1:1 to about 1:30, from about 1:3 to about 1:20, from about 1:4 to about 1: 18. From about 1:5 to about 1:17, from about 1:5 to about 1:15, from about 1:5 to about 1:12, from about 1:6 to about 1:12 or from about 1: In the range of 6 to about 1:10, for example, the weight ratio of the siRNA of the present disclosure to all lipids is about 1:5, 1:6, 1:7, 1:8, 1:9, 1:10, 1 :11, 1:12, 1:13, 1:14, 1:15, 1:16, 1:17, or 1:18.
在一些实施方式中,所述药物组合物在销售时各组分可以独立存在,在使用时可以液体制剂的形式存在。在一些实施方式中,本公开提供的siRNA与上述药学上可接受的载体形成的药物组合物可以按照已知的各种方法制备,只是用本公开提供的siRNA替代现有siRNA即可;在一些实施方式中,可以按照如下方法制备:In some embodiments, each component of the pharmaceutical composition may exist independently when sold, and may exist in the form of a liquid formulation when used. In some embodiments, the pharmaceutical composition formed by the siRNA provided in the present disclosure and the above-mentioned pharmaceutically acceptable carrier can be prepared according to various known methods, except that the siRNA provided in the present disclosure can replace the existing siRNA; in some In the embodiment, it can be prepared as follows:
将有机胺、辅助脂质和聚乙二醇化脂质按照上述摩尔比悬浮于醇中并混匀得到脂质溶液;醇的用量使得到的脂质溶液的总质量浓度为2-25mg/mL,例如可以为8-18mg/mL。所述醇选自药学上可接受的醇,诸如在室温附近为液体的醇,例如,乙醇、丙二醇、苯甲醇、甘油、聚乙二醇200、聚乙二醇300、聚乙二醇400中的一种或多种,例如可以为乙醇。The organic amine, auxiliary lipid and PEGylated lipid are suspended in alcohol according to the above molar ratio and mixed to obtain a lipid solution; the amount of alcohol is such that the total mass concentration of the resulting lipid solution is 2-25 mg/mL, For example, it can be 8-18 mg/mL. The alcohol is selected from pharmaceutically acceptable alcohols, such as alcohols that are liquid near room temperature, for example, ethanol, propylene glycol, benzyl alcohol, glycerin, polyethylene glycol 200, polyethylene glycol 300, and polyethylene glycol 400 One or more of, for example, ethanol.
将本公开提供的siRNA溶解于缓冲盐溶液中,得到siRNA水溶液。缓冲盐溶液的浓度为0.05-0.5M,例如可以为0.1-0.2M,调节缓冲盐溶液的pH至4.0-5.5,例如可以为5.0-5.2,缓冲盐溶液的用量使siRNA的浓度不超过0.6mg/mL,例如可以为0.2-0.4mg/mL。所述缓冲盐选自可溶性醋酸盐、可溶性柠檬酸盐中的一种或多种,例如可以为醋酸钠和/或醋酸钾。The siRNA provided in the present disclosure is dissolved in a buffered salt solution to obtain an aqueous siRNA solution. The concentration of the buffer salt solution is 0.05-0.5M, such as 0.1-0.2M, adjust the pH of the buffer salt solution to 4.0-5.5, such as 5.0-5.2, and the amount of the buffer salt solution is such that the concentration of siRNA does not exceed 0.6 mg /mL, for example, 0.2-0.4 mg/mL. The buffer salt is selected from one or more of soluble acetate and soluble citrate, for example, sodium acetate and/or potassium acetate.
将脂质溶液和siRNA水溶液混合,将混合后得到的产物在40-60℃孵育至少2分钟,例如可 以为5-30分钟,得到孵育后的脂质体制剂。脂质溶液和siRNA水溶液的体积比为1:(2-5)。The lipid solution and the siRNA aqueous solution are mixed, and the mixed product is incubated at 40-60°C for at least 2 minutes, for example, for 5-30 minutes, to obtain an incubated liposome preparation. The volume ratio of lipid solution and siRNA aqueous solution is 1: (2-5).
将孵育后的脂质体制剂浓缩或稀释,去除杂质,除菌,得到本公开提供的药物组合物,其理化参数为pH值为6.5-8,包封率不低于80%,粒径为40-200nm,多分散指数不高于0.30,渗透压为250-400mOsm/kg;例如理化参数可以为pH值为7.2-7.6,包封率不低于90%,粒径为60-100nm,多分散指数不高于0.20,渗透压为300-400mOsm/kg。The incubated liposome preparation is concentrated or diluted to remove impurities and sterilize to obtain the pharmaceutical composition provided by the present disclosure. Its physical and chemical parameters are pH 6.5-8, encapsulation rate not less than 80%, and particle size 40-200nm, polydispersity index is not higher than 0.30, osmotic pressure is 250-400mOsm/kg; for example, the physical and chemical parameters can be pH 7.2-7.6, encapsulation rate is not less than 90%, particle size is 60-100nm, more The dispersion index is not higher than 0.20, and the osmotic pressure is 300-400mOsm/kg.
其中,浓缩或稀释可以在去除杂质之前、之后或同时进行。去除杂质的方法可以采用现有各种方法,例如可以使用切相流系统、中空纤维柱,在100K Da条件下超滤,超滤交换溶液为pH7.4的磷酸盐缓冲液(PBS)。除菌的方法可以采用现有各种方法,例如可以在0.22μm滤器上过滤除菌。Wherein, concentration or dilution can be performed before, after or at the same time as removing impurities. Various existing methods can be used to remove impurities, such as a tangential flow system, a hollow fiber column, ultrafiltration under 100K Da conditions, and the ultrafiltration exchange solution is phosphate buffered saline (PBS) with pH 7.4. The method of sterilization can adopt various existing methods, for example, it can be filtered and sterilized on a 0.22 μm filter.
siRNA缀合物siRNA conjugate
本公开提供了一种siRNA缀合物,所述siRNA缀合物含有上述siRNA以及缀合连接至该siRNA的缀合基团。The present disclosure provides an siRNA conjugate containing the above-mentioned siRNA and a conjugating group conjugated to the siRNA.
一般来说,所述缀合基团包含药学上可接受的至少一个靶向基团和任选的接头(linker),并且,所述siRNA、所述接头和所述靶向基团依次连接。在一些实施方式中,所述靶向基团为1-6个。在一些实施方式中,所述靶向基团为2-4个。所述siRNA分子可以非共价或共价缀合至所述缀合基团,例如可以共价缀合至所述缀合基团。siRNA与缀合基团的缀合位点可以在siRNA正义链的3'端或5'端,也可在反义链的5'端,还可以在siRNA的内部序列中。在一些实施方式中,所述siRNA与缀合基团的缀合位点在siRNA正义链的3'末端。Generally, the conjugating group includes at least one pharmaceutically acceptable targeting group and an optional linker, and the siRNA, the linker and the targeting group are connected in sequence. In some embodiments, the targeting groups are 1-6. In some embodiments, there are 2-4 targeting groups. The siRNA molecule can be non-covalently or covalently conjugated to the conjugating group, for example can be covalently conjugated to the conjugating group. The conjugation site of the siRNA and the conjugating group can be at the 3'end or 5'end of the siRNA sense strand, or at the 5'end of the antisense strand, or in the internal sequence of the siRNA. In some embodiments, the conjugation site of the siRNA and the conjugating group is at the 3'end of the sense strand of the siRNA.
在一些实施方式中,所述缀合基团可以连接在核苷酸的磷酸基团、2'-位羟基或者碱基上。在一些实施方式中,所述缀合基团还可以连接在3'-位羟基上,此时核苷酸之间采用2'-5'磷酸二酯键连接。当缀合基团连接在siRNA链的末端时,所述缀合基团通常连接在核苷酸的磷酸基团上;当缀合基团连接在siRNA的内部序列时,所述缀合基团通常连接在核糖糖环或者碱基上。各种连接方式可以参考文献:Muthiah Manoharan et.al.siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silencing in vivo in hepatocytes.ACS Chemical biology,2015,10(5):1181-7.In some embodiments, the conjugating group may be attached to the phosphate group, the 2'-position hydroxyl group or the base of the nucleotide. In some embodiments, the conjugating group can also be connected to the 3'-position hydroxyl group, in which case the nucleotides are connected by 2'-5' phosphodiester bond. When the conjugating group is attached to the end of the siRNA chain, the conjugating group is usually attached to the phosphate group of the nucleotide; when the conjugating group is attached to the internal sequence of the siRNA, the conjugating group is Usually attached to the ribose ring or base. Various connection methods can refer to the literature: Muthiah Manoharan et al. siRNA conjugates carrying sequentially assembled trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silence in vivo in hepatocytes. ACS Chemical biology, 2015, 10(5)
在一些实施方式中,所述siRNA与缀合基团间可以通过酸不稳定的、或可还原的化学键相连,在细胞内涵体的酸性环境下,这些化学键可降解,从而使siRNA成为自由状态。对于不可降解的缀合方式,缀合基团可连接在siRNA的正义链,从而尽量降低缀合对siRNA活性的影响。In some embodiments, the siRNA and the conjugating group may be connected by acid-labile or reducible chemical bonds. Under the acidic environment of cell endosomes, these chemical bonds can be degraded, so that the siRNA becomes a free state. For non-degradable conjugation methods, the conjugating group can be attached to the sense strand of the siRNA to minimize the effect of conjugation on the activity of the siRNA.
在一些实施方式中,所述药学上可接受的靶向基团可以是siRNA给药领域常规使用的配体,例如WO2009082607A2中描述的各种配体,以引用的方式将其全部公开内容并入本文。In some embodiments, the pharmaceutically acceptable targeting group may be a ligand commonly used in the field of siRNA administration, such as various ligands described in WO2009082607A2, the entire disclosure of which is incorporated by reference This article.
在一些实施方式中,所述药学上可接受的靶向基团可以选自以下靶向分子或其衍生物形成的配体中的一种或多种:亲脂分子,例如胆固醇、胆汁酸、维生素(例如维生素E)、不同链长的脂质分子;聚合物,例如聚乙二醇;多肽,例如透膜肽;适配体;抗体;量子点;糖类,例如乳糖、聚乳糖、甘露糖、半乳糖、N-乙酰半乳糖胺(GalNAc);叶酸(folate);肝实质细胞表达的受体配体,例如去唾液酸糖蛋白、去唾液酸糖残基、脂蛋白(如高密度脂蛋白、低密度脂蛋白等)、胰高血糖素、神经递质(如肾上腺素)、生长因子、转铁蛋白等。In some embodiments, the pharmaceutically acceptable targeting group may be selected from one or more of the following targeting molecules or ligands formed by their derivatives: lipophilic molecules, such as cholesterol, bile acids, Vitamins (such as vitamin E), lipid molecules of different chain lengths; polymers, such as polyethylene glycol; polypeptides, such as membrane-permeable peptides; aptamers; antibodies; quantum dots; sugars, such as lactose, polylactose, and mannose Sugar, galactose, N-acetylgalactosamine (GalNAc); folic acid (folate); receptor ligands expressed by hepatic parenchymal cells, such as asialoglycoprotein, asialosugar residues, lipoproteins (such as high density Lipoprotein, low-density lipoprotein, etc.), glucagon, neurotransmitter (such as adrenaline), growth factor, transferrin, etc.
在一些实施方式中,所述的每个配体独立地选自一个能够与细胞表面受体结合的配体。在一些实施方式中,至少一个配体是能够与肝细胞表面受体结合的配体。在一些实施方式中,至少一个配体是能够与哺乳动物细胞表面受体结合的配体。在一些实施方式中,至少一个配体是能够与人肝细胞表面受体结合的配体。在一些实施方式中,至少一个配体是能够与肝表面去唾液酸糖蛋白受体(ASGPR)结合的配体。这些配体的种类为本领域技术人员所公知,其作用一般是与靶细胞表面的特异性受体相结合,介导与配体连接的siRNA递送至靶细胞。In some embodiments, each of the ligands is independently selected from a ligand capable of binding to cell surface receptors. In some embodiments, at least one ligand is a ligand capable of binding to receptors on the surface of liver cells. In some embodiments, at least one ligand is a ligand capable of binding to a mammalian cell surface receptor. In some embodiments, at least one ligand is a ligand capable of binding to human liver cell surface receptors. In some embodiments, at least one ligand is a ligand capable of binding to the liver surface asialoglycoprotein receptor (ASGPR). The types of these ligands are well-known to those skilled in the art, and their role is generally to bind to specific receptors on the surface of target cells and mediate the delivery of siRNA linked to the ligand to target cells.
在一些实施方式中,所述药学上可接受的靶向基团可以是与哺乳动物肝细胞表面上的去唾液酸糖蛋白受体(ASGPR)结合的任意一种配体。在一些实施方式中,每个配体独立地为去唾液酸糖蛋白,例如去唾液酸血清类粘蛋白(asialoorosomucoid,ASOR)或去唾液酸胎球蛋白(asialofetuin,ASF)。在一些实施方式中,所述配体为糖或糖的衍生物。In some embodiments, the pharmaceutically acceptable targeting group may be any ligand that binds to the asialoglycoprotein receptor (ASGPR) on the surface of mammalian liver cells. In some embodiments, each ligand is independently an asialoglycoprotein, such as asialoorosomucoid (ASOR) or asialofetuin (ASF). In some embodiments, the ligand is a sugar or a sugar derivative.
在一些实施方式中,至少一个配体是糖。在一些实施方式中,每个配体均是糖。在一些实施方式中,至少一个配体是单糖、多糖、修饰的单糖、修饰的多糖或糖衍生物。在一些实施方式中,至少一个所述配体可以是单糖、双糖或三糖。在一些实施方式中,至少有一个配体是修饰的糖。在一些实施方式中,每一个配体均为修饰的糖。在一些实施方式中,每个配体均独立地选自多糖、修饰的多糖、单糖、修饰的单糖、多糖衍生物或单糖衍生物。在一些实施方式中,每一个或至少一个配体选自于由以下糖所组成的组:葡萄糖及其衍生物、甘露聚糖及其衍生物、半乳糖及其衍生物、木糖及其衍生物、核糖及其衍生物、岩藻糖及其衍生物、乳糖及其衍生物、麦芽糖及其衍生物,阿拉伯糖及其衍生物、果糖及其衍生物和唾液酸。In some embodiments, at least one ligand is a sugar. In some embodiments, each ligand is a sugar. In some embodiments, at least one ligand is a monosaccharide, polysaccharide, modified monosaccharide, modified polysaccharide, or sugar derivative. In some embodiments, at least one of the ligands may be a monosaccharide, disaccharide, or trisaccharide. In some embodiments, at least one ligand is a modified sugar. In some embodiments, each ligand is a modified sugar. In some embodiments, each ligand is independently selected from polysaccharides, modified polysaccharides, monosaccharides, modified monosaccharides, polysaccharide derivatives, or monosaccharide derivatives. In some embodiments, each or at least one ligand is selected from the group consisting of the following sugars: glucose and its derivatives, mannan and its derivatives, galactose and its derivatives, xylose and its derivatives Food, ribose and its derivatives, fucose and its derivatives, lactose and its derivatives, maltose and its derivatives, arabinose and its derivatives, fructose and its derivatives, and sialic acid.
在一些实施方式中,每个所述配体可独立地选自D-吡喃甘露糖、L-吡喃甘露糖、D-阿拉伯糖、 D-呋喃木糖、L-呋喃木糖、D-葡萄糖、L-葡萄糖、D-半乳糖、L-半乳糖、α-D-呋喃甘露糖、β-D-呋喃甘露糖、α-D-吡喃甘露糖、β-D-吡喃甘露糖、α-D-吡喃葡萄糖、β-D-吡喃葡萄糖、α-D-呋喃葡萄糖、β-D-呋喃葡萄糖、α-D-呋喃果糖、α-D-吡喃果糖、α-D-吡喃半乳糖、β-D-吡喃半乳糖、α-D-呋喃半乳糖、β-D-呋喃半乳糖、葡糖胺、唾液酸、半乳糖胺、N-乙酰半乳糖胺、N-三氟乙酰半乳糖胺、N-丙酰半乳糖胺、N-正丁酰半乳糖胺、N-异丁酰半乳糖胺、2-氨基-3-O-[(R)-1-羧乙基]-2-脱氧-β-D-吡喃葡萄糖、2-脱氧-2-甲基氨基-L-吡喃葡萄糖、4,6-二脱氧-4-甲酰胺基-2,3-二-O-甲基-D-吡喃甘露糖、2-脱氧-2-磺氨基-D-吡喃葡萄糖、N-乙醇酰基-α-神经氨酸、5-硫代-β-D-吡喃葡萄糖、2,3,4-三-O-乙酰基-1-硫代-6-O-三苯甲基-α-D-吡喃葡萄糖苷甲酯、4-硫代-β-D-吡喃半乳糖、3,4,6,7-四-O-乙酰基-2-脱氧-1,5-二硫代-α-D-吡喃葡庚糖苷乙酯、2,5-脱水-D-阿洛糖腈、核糖、D-核糖、D-4-硫代核糖、L-核糖或L-4-硫代核糖。所述配体的其它选择可参见例如CN105378082A的记载,以引用的方式将其全部公开内容并入本文。In some embodiments, each of the ligands may be independently selected from D-mannanose, L-mannanose, D-arabinose, D-xylofuranose, L-xylofuranose, D- Glucose, L-glucose, D-galactose, L-galactose, α-D-mannanose, β-D-mannanose, α-D-mannanose, β-D-mannanose, α-D-glucopyranose, β-D-glucopyranose, α-D-glucopyranose, β-D-glucopyranose, α-D-frutofuranose, α-D-fructose pyranose, α-D-pyrano Galactopyrose, β-D-galactopyranose, α-D-galactofuranose, β-D-galactofuranose, glucosamine, sialic acid, galactosamine, N-acetylgalactosamine, N-tris Fluoroacetylgalactosamine, N-propionylgalactosamine, N-butyrylgalactosamine, N-isobutyrylgalactosamine, 2-amino-3-O-[(R)-1-carboxyethyl ]-2-deoxy-β-D-glucopyranose, 2-deoxy-2-methylamino-L-glucopyranose, 4,6-dideoxy-4-carboxamido-2,3-di-O -Methyl-D-mannanose, 2-deoxy-2-sulfoamino-D-glucopyranose, N-glycolyl-α-neuraminic acid, 5-thio-β-D-glucopyranose, 2,3,4-Tri-O-acetyl-1-thio-6-O-trityl-α-D-glucopyranoside methyl ester, 4-thio-β-D-pyran half Lactose, 3,4,6,7-tetra-O-acetyl-2-deoxy-1,5-dithio-α-D-glucopyrano-heptanoside ethyl ester, 2,5-anhydro-D-A Loose nitrile, ribose, D-ribose, D-4-thioribose, L-ribose or L-4-thioribose. For other options of the ligand, see, for example, the description of CN105378082A, the entire disclosure of which is incorporated herein by reference.
在一些实施方式中,所述siRNA缀合物中药学上可接受的靶向基团可以是半乳糖或N-乙酰半乳糖胺,其中,半乳糖或N-乙酰半乳糖胺分子可以是一价、二价、三价、四价。应当理解的是,这里所述的一价、二价、三价、四价分别指siRNA分子与含有作为靶向基团的半乳糖或N-乙酰半乳糖胺分子的缀合基团形成siRNA缀合物后,该siRNA缀合物中siRNA分子与半乳糖或N-乙酰半乳糖胺分子的摩尔比为1:1、1:2、1:3或1:4。在一些实施方式中,所述药学上可接受的靶向基团是N-乙酰半乳糖胺。在一些实施方式中,当本公开所述的siRNA与含有N-乙酰半乳糖胺的缀合基团缀合时,N-乙酰半乳糖胺分子是三价或四价。在一些实施方式中,当本公开所述的siRNA与含有N-乙酰半乳糖胺的缀合基团缀合时,N-乙酰半乳糖胺分子是三价。In some embodiments, the pharmaceutically acceptable targeting group in the siRNA conjugate may be galactose or N-acetylgalactosamine, wherein the galactose or N-acetylgalactosamine molecule may be monovalent , Second price, three price, four price. It should be understood that the monovalent, bivalent, trivalent, and tetravalent mentioned herein refer to the siRNA molecule and the conjugation group containing galactose or N-acetylgalactosamine as the targeting group to form siRNA conjugates. After compounding, the molar ratio of the siRNA molecule to the galactose or N-acetylgalactosamine molecule in the siRNA conjugate is 1:1, 1:2, 1:3 or 1:4. In some embodiments, the pharmaceutically acceptable targeting group is N-acetylgalactosamine. In some embodiments, when the siRNA described in the present disclosure is conjugated with a N-acetylgalactosamine-containing conjugating group, the N-acetylgalactosamine molecule is trivalent or tetravalent. In some embodiments, when the siRNA described in the present disclosure is conjugated with a N-acetylgalactosamine-containing conjugating group, the N-acetylgalactosamine molecule is trivalent.
靶向基团可经由合适的接头与siRNA分子相连,本领域技术人员可以根据靶向基团的具体类型选择合适的接头。这些接头、靶向基团的种类以及与siRNA的连接方式,可参见WO2015006740A2的公开内容,通过引用的方式将其整体内容并入本文。The targeting group can be connected to the siRNA molecule via a suitable linker, and those skilled in the art can select a suitable linker according to the specific type of the targeting group. For the types of linkers, targeting groups, and connection methods with siRNA, please refer to the disclosure of WO2015006740A2, and the entire content is incorporated herein by reference.
在一些实施方式中,当所述靶向基团为N-乙酰半乳糖胺时,合适的接头可以为如式(301)所示的结构:In some embodiments, when the targeting group is N-acetylgalactosamine, a suitable linker may have a structure as shown in formula (301):
Figure PCTCN2020091489-appb-000015
Figure PCTCN2020091489-appb-000015
其中,among them,
k为1-3的整数;k is an integer of 1-3;
L A为具有如式(302)所示结构的包含酰胺键的链状部分,每个所述L A在其两端分别与一个所述靶向基团和所述L C部分通过醚键相连接: L A having the formula (302) contains an amide bond-like portion of the structure shown, each of the L A at its two ends respectively of said group and the targeting moieties via ether linkages L C phase connection:
Figure PCTCN2020091489-appb-000016
Figure PCTCN2020091489-appb-000016
L B为具有如式(303)所示结构的包含N-酰基吡咯烷的链状部分,所述链状部分在其一端具有羰基并与所述L C部分通过酰胺键相连接,在另一端具有氧基并与所述siRNA通过磷酸酯键相连接: L B having the formula (303) comprises a pyrrolidine N- acyl chain portion shown structure, the linear portion having a carbonyl group at one end thereof and connected with the L C moiety through an amide bond, at the other end It has an oxygen group and is connected to the siRNA through a phosphate bond:
Figure PCTCN2020091489-appb-000017
Figure PCTCN2020091489-appb-000017
L C为基于羟甲基氨基甲烷、二羟甲基氨基甲烷或三羟甲基氨基甲烷的2-4价连接基团,所述L C经由氧原子与各个所述L A部分通过醚键相连接,并且经由氮原子与所述L B部分通过酰胺键相连接。 L C based aminomethane, two monovalent 2-4 aminomethane or tris (hydroxymethyl) aminomethane linking group, via an oxygen atom of the L C L A portion of each of the phases by ether linkages connection, and connected by an amide bond via a nitrogen atom and L B of the portion.
在一些实施方式中,当n=3,L C为基于三羟甲基氨基甲烷的4价连接基团时,由作为接头的-(L A) 3三羟甲基氨基甲烷-L B-连接N-乙酰半乳糖胺分子和siRNA分子所形成的siRNA缀合物,其结构如下式(304)所示: In some embodiments, when n=3 and L C is a tris-based tetravalent linking group, it is connected by -(L A ) 3 tris-L B -as a linker The structure of the siRNA conjugate formed by N-acetylgalactosamine molecule and siRNA molecule is shown in the following formula (304):
Figure PCTCN2020091489-appb-000018
Figure PCTCN2020091489-appb-000018
式中,双螺旋结构表示siRNA。In the formula, the double helix structure represents siRNA.
同样,siRNA与缀合基团的缀合位点可以在siRNA正义链的3'端或5'端,也可在反义链的5'端,还可以在siRNA的内部序列中。Similarly, the conjugation site of the siRNA and the conjugating group can be at the 3'end or 5'end of the siRNA sense strand, or at the 5'end of the antisense strand, or in the internal sequence of the siRNA.
在一些实施方式中,本公开所述siRNA的正义链3'末端通过接头-(L A) 3三羟甲基氨基甲烷-L B-与三个N-乙酰半乳糖胺(GalNAc)分子共价缀合,得到siRNA分子与GalNAc分子的摩尔比为1:3的siRNA缀合物,下文也可将其称为(GalNAc) 3-siRNA,其结构如下式(305)所示: In some embodiments, the present disclosure of the siRNA sense strand 3 'end by the linker - (L A) 3 Tris -L B - with three N- acetylgalactosamine (GalNAc) Covalent Conjugation to obtain an siRNA conjugate with a molar ratio of siRNA molecules to GalNAc molecules of 1:3, which may also be referred to as (GalNAc) 3 -siRNA hereinafter, and its structure is shown in the following formula (305):
Figure PCTCN2020091489-appb-000019
Figure PCTCN2020091489-appb-000019
其中,双螺旋结构表示所述siRNA,并且所述接头连接至所述siRNA的正义链3'末端。Wherein, the double helix structure represents the siRNA, and the linker is connected to the 3'end of the sense strand of the siRNA.
在一些实施方式中,当所述靶向基团为N-乙酰半乳糖胺时,合适的接头可以为如式(306)所示的结构:In some embodiments, when the targeting group is N-acetylgalactosamine, a suitable linker may have a structure as shown in formula (306):
Figure PCTCN2020091489-appb-000020
Figure PCTCN2020091489-appb-000020
其中,among them,
l为0-3的整数;l is an integer from 0-3;
*表示接头上通过醚键与靶向基团连接的位点; * Indicates the point on the linker connected to the targeting group through an ether bond;
#表示接头上通过磷酸酯键与siRNA连接的位点。 # Indicates the site on the linker that is connected to the siRNA via a phosphate bond.
在一些实施方式中,当l=2时,所述siRNA缀合物具有如式(307)所示的结构:In some embodiments, when l=2, the siRNA conjugate has a structure as shown in formula (307):
Figure PCTCN2020091489-appb-000021
Figure PCTCN2020091489-appb-000021
其中,双螺旋结构表示所述siRNA,并且所述接头连接至所述siRNA的正义链3'末端。Wherein, the double helix structure represents the siRNA, and the linker is connected to the 3'end of the sense strand of the siRNA.
上述缀合物可以通过现有技术中已经详细描述的方法进行合成。例如,WO2015006740A2中详细描述了多种缀合物的制备方法。通过本领域技术人员熟知的方式,获得本公开的siRNA缀合物。如WO2014025805A1中记载了式(305)所示结构的制备方法,Rajeev等人在ChemBioChem2015,16,903-908中描述了式(307)所示结构的制备方法。The above-mentioned conjugate can be synthesized by a method that has been described in detail in the prior art. For example, WO2015006740A2 describes in detail the preparation methods of various conjugates. The siRNA conjugate of the present disclosure is obtained by a method well known to those skilled in the art. For example, WO2014025805A1 describes the preparation method of the structure represented by formula (305), Rajeev et al. described the preparation method of the structure represented by formula (307) in ChemBioChem2015, 16, 903-908.
在一些实施方式中,所述siRNA缀合物具有如式(308)所示的结构:In some embodiments, the siRNA conjugate has a structure as shown in formula (308):
Figure PCTCN2020091489-appb-000022
Figure PCTCN2020091489-appb-000022
其中:among them:
n1为选自1-3的整数,n3为选自0-4的整数;n1 is an integer selected from 1-3, n3 is an integer selected from 0-4;
每个m1、m2或m3各自独立地为选自2-10的整数;Each m1, m2 or m3 is independently an integer selected from 2-10;
R 10、R 11、R 12、R 13、R 14或R 15各自独立地为H,或选自于由以下基团所组成的组:C 1-C 10烷基、C 1-C 10卤代烷基以及C 1-C 10烷氧基; R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently H, or are selected from the group consisting of C 1 -C 10 alkyl, C 1 -C 10 haloalkane Group and C 1 -C 10 alkoxy;
R 3为式A59所示结构的基团: R 3 is a group represented by the formula A59:
Figure PCTCN2020091489-appb-000023
Figure PCTCN2020091489-appb-000023
其中,E 1为OH、SH或BH 2,Nu为本公开的siRNA; Among them, E 1 is OH, SH or BH 2 , and Nu is the siRNA of the disclosure;
R 2是长度为1-20个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自于以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中,R 2可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10 烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、-SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、N(C 1-C 10烷基)(C 1-C 10烷基苯基)、NH(C 1-C 10烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤代烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基); R 2 is a linear alkylene group with a length of 1-20 carbon atoms, wherein one or more carbon atoms are optionally replaced by any one or more selected from the group consisting of: C (O), NH, O, S, CH=N, S(O) 2 , C 2 -C 10 alkenylene, C 2 -C 10 alkynylene, C 6 -C 10 arylene, C 3- C 18 heterocyclylene and C 5 -C 10 heteroarylene; and wherein R 2 may optionally have any one or more substituents in the group consisting of: C 1 -C 10 alkyl, C 6 -C 10 aryl, C 5 -C 10 heteroaryl, C 1 -C 10 haloalkyl, -OC 1 -C 10 alkyl, -OC 1 -C 10 alkylphenyl,- C 1 -C 10 alkyl-OH, -OC 1 -C 10 haloalkyl, -SC 1 -C 10 alkyl, -SC 1 -C 10 alkylphenyl, -C 1 -C 10 alkyl-SH, -SC 1 -C 10 haloalkyl, halogen substituent, -OH, -SH, -NH 2 , -C 1 -C 10 alkyl -NH 2 , -N (C 1 -C 10 alkyl) (C 1- C 10 alkyl), -NH (C 1 -C 10 alkyl), N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl phenyl), NH (C 1 -C 10 alkyl benzene) Group), cyano, nitro, -CO 2 H, -C(O)O (C 1 -C 10 alkyl), -CON (C 1 -C 10 alkyl) (C 1 -C 10 alkyl) , -CONH (C 1 -C 10 alkyl), -CONH 2 , -NHC(O) (C 1 -C 10 alkyl), -NHC(O) (phenyl), -N(C 1 -C 10 Alkyl) C (O) (C 1 -C 10 alkyl), -N (C 1 -C 10 alkyl) C (O) (phenyl), -C (O) C 1 -C 10 alkyl, -C(O)C 1 -C 10 alkylphenyl, -C(O)C 1 -C 10 haloalkyl, -OC(O)C 1 -C 10 alkyl, -SO 2 (C 1 -C 10 Alkyl), -SO 2 (phenyl), -SO 2 (C 1 -C 10 haloalkyl), -SO 2 NH 2 , -SO 2 NH (C 1 -C 10 alkyl), -SO 2 NH ( phenyl), - NHSO 2 (C 1 -C 10 alkyl), - NHSO 2 (phenyl), and -NHSO 2 (C 1 -C 10 haloalkyl);
每个L 1独立地是长度为1-70个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自于以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中,L 1可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、-SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、N(C 1-C 10烷基)(C 1-C 10烷基苯基)、NH(C 1-C 10烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤代烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基)。 Each L 1 is independently a linear alkylene group with a length of 1 to 70 carbon atoms, wherein one or more carbon atoms are optionally selected from any one or more of the following groups Replacement: C(O), NH, O, S, CH=N, S(O) 2 , C 2 -C 10 alkenylene, C 2 -C 10 alkynylene, C 6 -C 10 arylene , C 3 -C 18 heterocyclylene and C 5 -C 10 heteroarylene; and wherein, L 1 may optionally have any one or more substituents in the group consisting of the following groups: C 1 -C 10 alkyl, C 6 -C 10 aryl, C 5 -C 10 heteroaryl, C 1 -C 10 haloalkyl, -OC 1 -C 10 alkyl, -OC 1 -C 10 alkyl Phenyl, -C 1 -C 10 alkyl-OH, -OC 1 -C 10 haloalkyl, -SC 1 -C 10 alkyl, -SC 1 -C 10 alkylphenyl, -C 1 -C 10 alkane Group -SH, -SC 1 -C 10 haloalkyl, halogen substituent, -OH, -SH, -NH 2 , -C 1 -C 10 alkyl -NH 2 , -N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl), -NH (C 1 -C 10 alkyl), N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl phenyl), NH (C 1 -C 10 alkyl phenyl), cyano, nitro, -CO 2 H, -C (O) O (C 1 -C 10 alkyl), -CON (C 1 -C 10 alkyl) (C 1 -C 10 alkyl), -CONH (C 1 -C 10 alkyl), -CONH 2 , -NHC(O) (C 1 -C 10 alkyl), -NHC(O)(phenyl), -N(C 1 -C 10 alkyl) C (O) (C 1 -C 10 alkyl), -N (C 1 -C 10 alkyl) C (O) (phenyl), -C (O) C 1 -C 10 alkyl, -C(O)C 1 -C 10 alkylphenyl, -C(O)C 1 -C 10 haloalkyl, -OC(O)C 1 -C 10 alkyl, -SO 2 (C 1 -C 10 alkyl), -SO 2 (phenyl), -SO 2 (C 1 -C 10 haloalkyl), -SO 2 NH 2 , -SO 2 NH (C 1 -C 10 alkyl),- SO 2 NH (phenyl), - NHSO 2 (C 1 -C 10 alkyl), - NHSO 2 (phenyl), and -NHSO 2 (C 1 -C 10 haloalkyl).
在一些实施方式中,L 1可选自于由A1-A26基团或其任意组合所组成的组,其中A1-A26的结构和定义如下所示: In some embodiments, L 1 may be selected from the group consisting of A1-A26 groups or any combination thereof, wherein the structure and definition of A1-A26 are as follows:
Figure PCTCN2020091489-appb-000024
Figure PCTCN2020091489-appb-000024
Figure PCTCN2020091489-appb-000025
Figure PCTCN2020091489-appb-000025
其中,每个j1独立地为1-20的整数;每个j2独立地为1-20的整数;Wherein, each j1 is independently an integer of 1-20; each j2 is independently an integer of 1-20;
每个R'独立地为C 1-C 10烷基; Each R'is independently C 1 -C 10 alkyl;
每个Ra独立地选自式(A27)-(A45)所示的基团或其任意组合所组成的组:Each Ra is independently selected from the group consisting of groups represented by formulas (A27)-(A45) or any combination thereof:
Figure PCTCN2020091489-appb-000026
Figure PCTCN2020091489-appb-000026
Figure PCTCN2020091489-appb-000027
Figure PCTCN2020091489-appb-000027
每个Rb独立地为C 1-C 10烷基;
Figure PCTCN2020091489-appb-000028
表示基团共价连接的位点。
Each Rb is independently C 1 -C 10 alkyl;
Figure PCTCN2020091489-appb-000028
Represents the point at which the group is covalently attached.
技术人员会理解的是,尽管为了方便起见,L 1被定义为线性亚烷基,但是它可能不是线性基团或者名称不同,例如由于上述替换和/或取代而产生的胺或烯基。为了本公开内容的目的,L 1的长度是连接两个连接点的链中的原子数。为此目的,将替换所述直链亚烷基的碳原子而得到的环(如亚杂环基或亚杂芳基)计为一个原子。 The skilled person will understand that although L 1 is defined as a linear alkylene group for convenience, it may not be a linear group or have a different name, such as an amine or alkenyl group due to the above substitutions and/or substitutions. For the purposes of this disclosure, the length of L 1 is the number of atoms in the chain connecting the two connection points. For this purpose, a ring (such as a heterocyclylene or heteroarylene group) obtained by replacing the carbon atom of the linear alkylene group is counted as one atom.
M 1表示靶向基团,其定义和可选择的范围与上述靶向基团相同。在一些实施方式中,每个M 1独立地选自对哺乳动物肝脏细胞表面上的去唾液酸糖蛋白受体具有亲合力的配体中的一种。 M 1 represents a targeting group, and its definition and selectable range are the same as the above-mentioned targeting group. In some embodiments, each M 1 is independently selected from one of the ligands having affinity for the asialoglycoprotein receptor on the surface of mammalian liver cells.
当M 1为对哺乳动物肝脏细胞表面上的去唾液酸糖蛋白受体具有亲合力的配体时,在一些实施方式中,n1可以是1-3的整数,n3可以是0-4的整数,保证所述缀合物中M 1靶向基团的个数至少为2;在一些实施方式中,n1+n3≥2,这样可以使得M 1靶向基团的个数至少为3,从而使得M 1靶向基团与肝表面去唾液酸糖蛋白受体更容易结合,进而促进所述缀合物通过内吞作用进入细胞。实验表明,当M 1靶向基团的个数大于3个时,M 1靶向基团与肝表面去唾液酸糖蛋白受体结合的容易程度增加并不明显,因此,从合成容易程度、结构/工艺成本和递送效率等多方面综合考虑,在一些实施方式中,n1为1-2的整数,n3为0-1的整数,且n1+n3=2-3。 When M 1 is a ligand that has affinity for the asialoglycoprotein receptor on the surface of mammalian liver cells, in some embodiments, n1 may be an integer of 1-3, and n3 may be an integer of 0-4 , To ensure that the number of M 1 targeting groups in the conjugate is at least 2; in some embodiments, n1+n3≥2, so that the number of M 1 targeting groups is at least 3, thereby This makes it easier for the M 1 targeting group to bind to the asialoglycoprotein receptor on the liver surface, thereby promoting the conjugate to enter the cell through endocytosis. Experiments have shown that when the number of M 1 targeting groups is greater than 3, the ease of binding of M 1 targeting groups to the asialoglycoprotein receptor on the liver surface does not increase significantly. Therefore, from the ease of synthesis, Considering multiple aspects such as structure/process cost and delivery efficiency, in some embodiments, n1 is an integer of 1-2, n3 is an integer of 0-1, and n1+n3=2-3.
在一些实施方式中,每个m1、m2或m3各自独立地选自2-10的整数时,可以使多个M 1靶向基团之间的空间位置适合M 1靶向基团与肝表面去唾液酸糖蛋白受体的结合,为了使本公开提供的siRNA缀合物更为简单,更容易合成和/或降低成本,在一些实施方式中,每个m1、m2或m3各自独立地为2-5的整数,在一些实施方式中,m1=m2=m3。 In some embodiments, each of m1, m2, or m3 are each independently an integer selected from 2 to 10, M 1 may be a plurality of spaces between the position for the targeting group M 1 and the surface of liver targeting group In order to make the siRNA conjugates provided in the present disclosure simpler, easier to synthesize and/or reduce cost by the binding of asialoglycoprotein receptors, in some embodiments, each m1, m2, or m3 is independently An integer of 2-5. In some embodiments, m1=m2=m3.
本领域技术人员可以理解,当R 10、R 11、R 12、R 13、R 14或R 15各自独立地选自H、C 1-C 10烷基、C 1-C 10卤代烷基、以及C 1-C 10烷氧基中的一种时,不会改变本公开的siRNA缀合物的性质,均可以实现本公开的目的。在一些实施方式中,R 10、R 11、R 12、R 13、R 14或R 15各自独立地选自H、甲基或乙基。在一些实施方式中,R 10、R 11、R 12、R 13、R 14和R 15均为H。 Those skilled in the art can understand that when R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently selected from H, C 1 -C 10 alkyl, C 1 -C 10 haloalkyl, and C One of the 1- C 10 alkoxy groups will not change the properties of the siRNA conjugate of the present disclosure, and can achieve the purpose of the present disclosure. In some embodiments, R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently selected from H, methyl, or ethyl. In some embodiments, R 10 , R 11 , R 12 , R 13 , R 14 and R 15 are all H.
R 3为式A59所示结构的基团,其中,E 1为OH、SH或BH 2,基于制备原料易获取性的考虑,在一些实施方式中,E 1为OH或SH。 R 3 is a group represented by the formula A59, wherein E 1 is OH, SH or BH 2. Based on the consideration of the availability of raw materials for preparation, in some embodiments, E 1 is OH or SH.
R 2的选择是为了实现与含氮骨架上的N原子与A59的连接。在本公开的上下文中,“含氮骨架”是指连接有R 10、R 11、R 12、R 13、R 14和R 15的碳原子与N原子互相连接的链状结构。因此,R 2可以是任何能够以适当方式将A59基团连接至含氮骨架上的N原子的连接基团。在一些实施方式中,在通过固相合成的工艺制备式(308)所示的siRNA缀合物的情况下,R 2基团中需要同 时含有与含氮骨架上的N原子连接的连接位点和与R 3中的P原子相连接的连接位点。在一些实施方式中,R 2中所述与含氮骨架上的N原子连接的位点与N原子形成酰胺键,所述与R 3上的P原子连接的位点与P原子形成磷酸酯键;在一些实施方式中,R 2可以是B5、B6、B5'或B6': The choice of R 2 is to realize the connection with the N atom on the nitrogen-containing skeleton and A59. In the context of the present disclosure, "nitrogen-containing skeleton" refers to a chain structure in which carbon atoms to which R 10 , R 11 , R 12 , R 13 , R 14 and R 15 are connected and N atoms are connected to each other. Therefore, R 2 may be any linking group capable of linking the A59 group to the N atom on the nitrogen-containing skeleton in an appropriate manner. In some embodiments, in the case of preparing the siRNA conjugate represented by formula (308) by a solid-phase synthesis process, the R 2 group needs to also contain a connection site connected to the N atom on the nitrogen-containing backbone And the connection site to the P atom in R 3 . In some embodiments, the site connected to the N atom on the nitrogen-containing skeleton in R 2 forms an amide bond with the N atom, and the site connected to the P atom on R 3 forms a phosphate bond with the P atom ; In some embodiments, R 2 can be B5, B6, B5' or B6':
Figure PCTCN2020091489-appb-000029
Figure PCTCN2020091489-appb-000029
其中,
Figure PCTCN2020091489-appb-000030
表示基团共价键连接的位点。
among them,
Figure PCTCN2020091489-appb-000030
Represents the site where the groups are covalently bonded.
q 2的取值范围可以是1-10的整数,在一些实施方式中,q 2为1-5的整数。 The value range of q 2 can be an integer of 1-10. In some embodiments, q 2 is an integer of 1-5.
L 1的作用是将M 1靶向基团与含氮骨架上的N连接,为式(308)所示的siRNA缀合物提供肝靶向功能。在一些实施方式中,L 1选自式A1-A26基团中的一种或多种的连接组合。在一些实施方式中,L 1选自A1、A4、A5、A6、A8、A10、A11和A13中的一种或多种的连接组合。在一些实施方式中,L 1选自A1、A4、A8、A10和A11中至少2个的连接组合。在一些实施方式中,L 1选自A1、A8、A10中至少2个的连接组合。 The role of L 1 is to connect the M 1 targeting group to the N on the nitrogen-containing backbone to provide the liver targeting function for the siRNA conjugate represented by formula (308). In some embodiments, L 1 is selected from one or more linked combinations of groups of formula A1-A26. In some embodiments, L 1 is selected from a connection combination of one or more of A1, A4, A5, A6, A8, A10, A11, and A13. In some embodiments, L 1 is selected from a connection combination of at least two of A1, A4, A8, A10, and A11. In some embodiments, L 1 is selected from a connection combination of at least two of A1, A8, and A10.
在一些实施方式中,L 1的长度可以为3-25个原子,3-20个原子、4-15个原子或5-12个原子。在一些实施方式中,L 1的长度为3个、4个、5个、6个、7个、8个、9个、10个、11个、12个、13个、14个、15个、16个、17个、18个、19个、20个、21个、22个、23个、24个、25个、30个、35个、40个、45个、50个、55个、60个原子。 In some embodiments, the length of L 1 can be 3-25 atoms, 3-20 atoms, 4-15 atoms, or 5-12 atoms. In some embodiments, the length of L 1 is 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60 atom.
在一些实施方式中,j1为2-10的整数,在一些实施方式中,j1为3-5的整数。在一些实施方式中,j2为2-10的整数,在一些实施方式中,j2为3-5的整数。R'为C 1-C 4烷基,在一些实施方式中,R'为甲基、乙基和异丙基中的一种。Ra为A27、A28、A29、A30和A31中的一种,在一些实施方式中,Ra为A27或A28。Rb为C 1-C 5烷基,在一些实施方式中,Rb为甲基、乙基、异丙基和丁基中的一种。在一些实施方式中,在式A1-A26中各自对j1、j2、R'、Ra、Rb进行选择,以实现M 1靶向基团与含氮骨架上的N原子连接,并使M 1靶向基团之间的空间位置更适合M 1靶向基团与肝表面去唾液酸糖蛋白受体结合。 In some embodiments, j1 is an integer of 2-10, and in some embodiments, j1 is an integer of 3-5. In some embodiments, j2 is an integer from 2-10, and in some embodiments, j2 is an integer from 3-5. R'is a C 1 -C 4 alkyl group, and in some embodiments, R'is one of methyl, ethyl, and isopropyl. Ra is one of A27, A28, A29, A30, and A31. In some embodiments, Ra is A27 or A28. Rb is a C 1 -C 5 alkyl group. In some embodiments, Rb is one of methyl, ethyl, isopropyl and butyl. In some embodiments, each of j1, j2, R', Ra, Rb is selected in formula A1-A26, so that the M 1 targeting group is connected to the N atom on the nitrogen-containing backbone, and the M 1 target The spatial position between the orientation groups is more suitable for the M 1 targeting group to bind to the asialoglycoprotein receptor on the liver surface.
在一些实施方式中,该缀合物具有式(403)、(404)、(405)、(406)、(407)、(408)、(409)、(410)、(411)、(412)、(413)、(414)、(415)、(416)、(417)、(418)、(419)、(420)、(421)或(422)所示的结构:In some embodiments, the conjugate has the formula (403), (404), (405), (406), (407), (408), (409), (410), (411), (412 ), (413), (414), (415), (416), (417), (418), (419), (420), (421) or (422):
Figure PCTCN2020091489-appb-000031
Figure PCTCN2020091489-appb-000031
Figure PCTCN2020091489-appb-000032
Figure PCTCN2020091489-appb-000032
Figure PCTCN2020091489-appb-000033
Figure PCTCN2020091489-appb-000033
Figure PCTCN2020091489-appb-000034
Figure PCTCN2020091489-appb-000034
Figure PCTCN2020091489-appb-000035
Figure PCTCN2020091489-appb-000035
Figure PCTCN2020091489-appb-000036
Figure PCTCN2020091489-appb-000036
Figure PCTCN2020091489-appb-000037
Figure PCTCN2020091489-appb-000037
在一些实施方式中,式A59中的P原子可以连接到siRNA序列中任何可能的位置,例如,式A59中的P原子可以连接到siRNA正义链或反义链的任何一个核苷酸上;在一些实施方式中,式A59中的P原子连接到siRNA正义链的任何一个核苷酸上。在一些实施方式中,式A59中的P原子连接到siRNA正义链或反义链的端部;在一些实施方式中,式A59中的P原子连接到siRNA正义链的端部。所述端部指所述正义链或所述反义链中从其一端起算的前4个核苷酸。在一些实施方式中,式A59中的P原子连接到siRNA正义链或反义链的末端;在一些实施方式中,式A59中的P原子连接到siRNA正义链的3'末端。在连接至siRNA的正义链的上述位置的情况下,式(308)所示的siRNA缀合物进入细胞后,在解旋时,可以释放出单独的siRNA反义链,以阻断PCSK9 mRNA翻译蛋白质的过程,抑制PCSK9基因表达。In some embodiments, the P atom in formula A59 can be attached to any possible position in the siRNA sequence. For example, the P atom in formula A59 can be attached to any nucleotide in the sense strand or antisense strand of the siRNA; In some embodiments, the P atom in formula A59 is connected to any nucleotide in the sense strand of the siRNA. In some embodiments, the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand; in some embodiments, the P atom in formula A59 is connected to the end of the siRNA sense strand. The end refers to the first 4 nucleotides from one end of the sense strand or the antisense strand. In some embodiments, the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand; in some embodiments, the P atom in formula A59 is connected to the 3'end of the siRNA sense strand. In the case of being connected to the above position of the sense strand of siRNA, after the siRNA conjugate represented by formula (308) enters the cell, when unwinding, a separate siRNA antisense strand can be released to block PCSK9 mRNA translation The protein process inhibits PCSK9 gene expression.
在一些实施方式中,式A59中的P可以连接到siRNA中的核苷酸上任何可能的位置,例如,核苷酸的5'位、核苷酸的2'位、核苷酸的3'位或核苷酸的碱基上。在一些实施方式中,式A59中的P原子可通过形成磷酸二酯键连接至所述siRNA中的核苷酸的2'位、3'位或5'位。在一些实施方式中,式A59中的P原子连接在siRNA正义链3'末端核苷酸的3'羟基脱氢后形成的氧原子上(此时,A59中的P原子也可以看作是siRNA中含有的磷酸基团中的P原子),或者式A59中的P原子通过取代siRNA正义链中的一个核苷酸的2'-羟基中的氢与核苷酸连接,或者式A59中的P原子通过取代siRNA正义链5'末端核苷酸的5'羟基中的氢与核苷酸连接。In some embodiments, P in formula A59 can be attached to any possible position on the nucleotide in the siRNA, for example, the 5'position of the nucleotide, the 2'position of the nucleotide, the 3'of the nucleotide Position or nucleotide base. In some embodiments, the P atom in formula A59 can be connected to the 2', 3'or 5'position of the nucleotide in the siRNA by forming a phosphodiester bond. In some embodiments, the P atom in formula A59 is connected to the oxygen atom formed after the 3'hydroxyl group of the 3'terminal nucleotide of the siRNA sense strand is dehydrogenated (at this time, the P atom in A59 can also be regarded as siRNA The P atom in the phosphate group contained in A59), or the P atom in formula A59 is connected to the nucleotide by substituting the hydrogen in the 2'-hydroxyl group of one nucleotide in the sense strand of siRNA, or the P in formula A59 The atom is connected to the nucleotide by replacing the hydrogen in the 5'hydroxyl group of the 5'terminal nucleotide of the siRNA sense strand.
本公开的发明人意外发现,本公开的siRNA缀合物在具有显著提高的血浆中稳定性、低脱靶效应的同时,还表现出较高的PCSK9 mRNA沉默活性,而且还具有较高的血脂抑制作用。在一些实施方式中,本公开的siRNA可以为表1a-1g中示出的siRNA中的一种。含有这些siRNA的 缀合物表现出更高的PCSK9 mRNA沉默活性。The inventors of the present disclosure unexpectedly discovered that the siRNA conjugate of the present disclosure has significantly improved plasma stability and low off-target effects, while also exhibiting higher PCSK9 mRNA silencing activity, and also has higher blood lipid suppression effect. In some embodiments, the siRNA of the present disclosure may be one of the siRNAs shown in Tables 1a-1g. The conjugates containing these siRNAs showed higher PCSK9 mRNA silencing activity.
表1a本公开的第一种siRNA序列Table 1a The first siRNA sequence of the present disclosure
Figure PCTCN2020091489-appb-000038
Figure PCTCN2020091489-appb-000038
Figure PCTCN2020091489-appb-000039
Figure PCTCN2020091489-appb-000039
表1b本公开的第二种siRNA序列Table 1b The second siRNA sequence of the present disclosure
Figure PCTCN2020091489-appb-000040
Figure PCTCN2020091489-appb-000040
Figure PCTCN2020091489-appb-000041
Figure PCTCN2020091489-appb-000041
表1c本公开的第三种siRNA序列Table 1c The third siRNA sequence of the present disclosure
Figure PCTCN2020091489-appb-000042
Figure PCTCN2020091489-appb-000042
Figure PCTCN2020091489-appb-000043
Figure PCTCN2020091489-appb-000043
表1d本公开的第四种siRNA序列Table 1d The fourth siRNA sequence of the present disclosure
Figure PCTCN2020091489-appb-000044
Figure PCTCN2020091489-appb-000044
Figure PCTCN2020091489-appb-000045
Figure PCTCN2020091489-appb-000045
Figure PCTCN2020091489-appb-000046
Figure PCTCN2020091489-appb-000046
表1e本公开的第五种siRNA序列Table 1e The fifth siRNA sequence of the present disclosure
Figure PCTCN2020091489-appb-000047
Figure PCTCN2020091489-appb-000047
Figure PCTCN2020091489-appb-000048
Figure PCTCN2020091489-appb-000048
表1f本公开的第六种siRNA序列Table 1f The sixth siRNA sequence of the present disclosure
Figure PCTCN2020091489-appb-000049
Figure PCTCN2020091489-appb-000049
Figure PCTCN2020091489-appb-000050
Figure PCTCN2020091489-appb-000050
表1g本公开的第七种siRNA序列Table 1g The seventh siRNA sequence of the present disclosure
Figure PCTCN2020091489-appb-000051
Figure PCTCN2020091489-appb-000051
Figure PCTCN2020091489-appb-000052
Figure PCTCN2020091489-appb-000052
本公开所述siRNA或siRNA缀合物中,每个相邻核苷酸之间由磷酸二酯键或硫代磷酸二酯键连接,磷酸二酯键或硫代磷酸二酯键中的非桥接氧原子或硫原子带有负电荷,它可以以羟基或巯基的形式存在,羟基或巯基中的氢离子也可以部分或全部被阳离子取代。所述阳离子可以是任意的阳离子,如金属阳离子,铵离子NH 4 +,有机铵阳离子中的一种。出于提高溶解性考虑,在一种实施方式中,所述阳离子选自碱金属离子、三级胺形成的铵阳离子和季铵阳离子中的一种或多种。碱金属离子可以是K +和/或Na +,三级胺形成的阳离子可以是三乙胺形成的铵离子和/或N,N-二异丙基乙胺形成的铵离子。因此,本公开所述siRNA或siRNA缀合物可以至少部分以盐的形式存在。在一种方式中,磷酸二酯键或硫代磷酸二酯键中的非桥接氧原子或硫原子至少部分与钠离子结合,本公开所述siRNA或siRNA缀合物以钠盐或部分钠盐的形式存在。 In the siRNA or siRNA conjugate of the present disclosure, each adjacent nucleotide is connected by a phosphodiester bond or a phosphorothioate bond, and the phosphodiester bond or phosphorothioate bond is not bridged The oxygen atom or sulfur atom has a negative charge, it can exist in the form of a hydroxyl group or a mercapto group, and the hydrogen ion in the hydroxyl group or mercapto group can also be partially or completely replaced by a cation. The cation may be any cation, such as one of metal cation, ammonium ion NH 4 + , and organic ammonium cation. In consideration of improving solubility, in one embodiment, the cation is selected from one or more of alkali metal ions, ammonium cations formed by tertiary amines, and quaternary ammonium cations. The alkali metal ion may be K + and/or Na + , and the cation formed by the tertiary amine may be an ammonium ion formed by triethylamine and/or an ammonium ion formed by N,N-diisopropylethylamine. Therefore, the siRNA or siRNA conjugate described in the present disclosure may exist at least partially in the form of a salt. In one mode, the non-bridging oxygen atom or sulfur atom in the phosphodiester bond or phosphorothioate bond is at least partially combined with sodium ions, and the siRNA or siRNA conjugate described in the present disclosure is sodium salt or partial sodium salt. The form exists.
本领域技术人员清楚知晓的是,可以通过使用具有相应修饰的核苷单体来将修饰的核苷酸基团引入本公开所述的siRNA中。制备具有相应修饰的核苷单体的方法及将修饰的核苷酸基团引入siRNA的方法也是本领域技术人员所熟知的。所有修饰的核苷单体均可以商购得到或者采用已知方法制备得到。It is clear to those skilled in the art that modified nucleotide groups can be introduced into the siRNA described in the present disclosure by using nucleoside monomers with corresponding modifications. The method of preparing nucleoside monomers with corresponding modifications and the method of introducing modified nucleotide groups into siRNA are also well known to those skilled in the art. All modified nucleoside monomers are commercially available or prepared by known methods.
式(308)所示的siRNA缀合物的制备Preparation of siRNA conjugate represented by formula (308)
可以采用任意合理的合成路线制备式(308)所示的siRNA缀合物。Any reasonable synthetic route can be used to prepare the siRNA conjugate represented by formula (308).
在一些实施方式中,式(308)所示的siRNA缀合物可以采用如下方法制备,该方法包括在亚磷酰胺固相合成的条件下,分别按照siRNA正义链和反义链的核苷酸种类和顺序,按照3'到5'的方向将核苷单体依次连接,每个核苷单体的连接包括脱保护、偶联、盖帽、氧化或硫化四步反应;分离出siRNA的正义链和反义链,退火,其中,所述siRNA为上述本公开的siRNA;In some embodiments, the siRNA conjugate represented by formula (308) can be prepared by the following method, which includes under the conditions of phosphoramidite solid-phase synthesis, according to the nucleotides of the sense strand and antisense strand of the siRNA, respectively. Type and order, according to the direction of 3'to 5', connect the nucleoside monomers in turn. The connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization; isolate the sense strand of siRNA And the antisense strand, annealing, wherein the siRNA is the above-mentioned siRNA of the present disclosure;
并且,该方法还包括在偶联反应条件和偶联试剂存在下,将式(321)所示的化合物与核苷单体或连接在固相载体上的核苷酸序列接触,使式(321)所示的化合物经偶联反应连接至核苷酸序列。下文中,式(321)所示的化合物也称作缀合分子。In addition, the method also includes contacting the compound represented by formula (321) with a nucleoside monomer or a nucleotide sequence linked to a solid support in the presence of coupling reaction conditions and a coupling reagent, so that the formula (321) The compound shown in) is linked to the nucleotide sequence through a coupling reaction. Hereinafter, the compound represented by formula (321) is also referred to as a conjugate molecule.
Figure PCTCN2020091489-appb-000053
Figure PCTCN2020091489-appb-000053
其中:among them:
R 4为能够结合至式(308)所示的化合物中Nu代表的siRNA的基团。在一些实施方式中,R 4为能够通过共价键结合至Nu代表的siRNA的基团。在一些实施方式中,R 4为能够经反应而通 过磷酸二酯键缀合至Nu代表的siRNA的任意官能团的基团; R 4 is a group capable of binding to the siRNA represented by Nu in the compound represented by formula (308). In some embodiments, R 4 is a group capable of covalently bonding to the siRNA represented by Nu. In some embodiments, R 4 is a group capable of being conjugated to any functional group of siRNA represented by Nu through a phosphodiester bond through a reaction;
每个S 1独立地是M 1中全部活性羟基被YCOO-基团取代而形成的基团,其中,每个Y独立地选自甲基、三氟甲基、二氟甲基、一氟甲基、三氯甲基、二氯甲基、一氯甲基、乙基、正丙基、异丙基、苯基、卤代苯基以及烷基苯基中的一种;在一些实施方式中,Y为甲基。 Each S 1 is independently a group formed by replacing all active hydroxyl groups in M 1 with YCOO- groups, wherein each Y is independently selected from methyl, trifluoromethyl, difluoromethyl, and monofluoromethyl One of phenyl group, trichloromethyl, dichloromethyl, monochloromethyl, ethyl, n-propyl, isopropyl, phenyl, halophenyl, and alkylphenyl; in some embodiments , Y is methyl.
n1、n3、m1、m2、m3、R 10、R 11、R 12、R 13、R 14、R 15、L 1、M 1各自的定义和可选择的范围如前所述。 The definitions and selectable ranges of n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , and M 1 are as described above.
R 4的选择是为了实现与含氮骨架上的N原子的连接,并且为合成式(308)所示的siRNA缀合物提供合适的反应位点。在一些实施方式中,R 4中包括R 2连接基团或经保护的R 2连接基团,以及可通过反应与siRNA形成A59所示结构的官能团。 The choice of R 4 is to realize the connection with the N atom on the nitrogen-containing backbone and to provide a suitable reaction site for the synthesis of the siRNA conjugate represented by formula (308). In some embodiments, R 4 includes an R 2 linking group or a protected R 2 linking group, and a functional group that can react with siRNA to form the structure shown in A59.
在一些实施方式中,R 4包含可与Nu代表的siRNA或核苷单体上的基团形成亚磷酸酯的第1官能团以及可与羟基或氨基反应形成共价键的第2官能团或者含有由所述共价键连接的固相载体。在一些实施方式中,所述第1官能团为亚磷酰胺、羟基或被保护的羟基。在一些实施方式中,所述第2官能团为亚磷酰胺、羧基或羧酸盐。在一些实施方式中,所述第2官能团为经由共价键连接至分子其他部分的固相载体,所述共价键由羟基或氨基形成。在一些实施方式中,所述固相载体经由磷酸酯键、羧酸酯键或酰胺键连接。在一些实施方式中,所述固相载体为树脂。 In some embodiments, R 4 includes a first functional group that can form a phosphite with a group on the siRNA or nucleoside monomer represented by Nu and a second functional group that can react with a hydroxyl group or an amino group to form a covalent bond, or contains The solid phase carrier connected by the covalent bond. In some embodiments, the first functional group is phosphoramidite, hydroxyl or protected hydroxyl. In some embodiments, the second functional group is phosphoramidite, carboxyl or carboxylate. In some embodiments, the second functional group is a solid support connected to other parts of the molecule via a covalent bond, and the covalent bond is formed by a hydroxyl group or an amino group. In some embodiments, the solid support is connected via a phosphate bond, a carboxylate bond, or an amide bond. In some embodiments, the solid phase carrier is a resin.
在一些实施方式中,所述第1官能团含有羟基、-OR k或式(C3)所示的基团;所述第2官能团含有式(C1)、(C2)、(C3)、(C1')或(C3')所示的结构: In some embodiments, the first functional group contains a hydroxyl group, -OR k, or a group represented by formula (C3); the second functional group contains formula (C1), (C2), (C3), (C1' ) Or (C3'):
Figure PCTCN2020091489-appb-000054
Figure PCTCN2020091489-appb-000054
式中,q 1为1-4的整数,X为O或NH,M +为阳离子,R k为羟基保护基团,SPS表示固相载体,
Figure PCTCN2020091489-appb-000055
表示基团共价连接的位点。
In the formula, q 1 is an integer from 1 to 4, X is O or NH, M + is a cation, R k is a hydroxyl protecting group, SPS is a solid phase carrier,
Figure PCTCN2020091489-appb-000055
Represents the point at which the group is covalently attached.
在一些实施方式中,所述第1官能团含有亚磷酰胺基团,如式(C3)所示,该亚磷酰胺基团可以与核苷酸上的任意位置的羟基,如2'位羟基或3'位羟基发生偶联反应形成亚磷酸酯,并经氧化或硫化形成式A59所示的磷酸二酯键或硫代磷酸酯键,将缀合分子缀合至siRNA。此时,即使所述第2官能团并不存在,式(321)化合物也能够缀合至核苷酸,不影响式(308)所示的siRNA缀合物的获得。在此情况下,在经由亚磷酰胺固相合成等方法获得siRNA的正义链或反义链后,使式(321)化合物与核苷酸序列中末端核苷酸上的羟基反应,并在后续的氧化或硫化过程中形成磷酸二酯键连接或硫代磷酸酯连接,将式(321)化合物缀合至siRNA。In some embodiments, the first functional group contains a phosphoramidite group, as shown in formula (C3), the phosphoramidite group can be combined with a hydroxyl group at any position on the nucleotide, such as the 2'hydroxyl group or The 3'hydroxyl group undergoes a coupling reaction to form a phosphite, which is oxidized or vulcanized to form a phosphodiester bond or a phosphorothioate bond represented by formula A59, and the conjugation molecule is conjugated to the siRNA. At this time, even if the second functional group does not exist, the compound of formula (321) can be conjugated to nucleotides without affecting the obtaining of the siRNA conjugate represented by formula (308). In this case, after obtaining the sense strand or antisense strand of the siRNA by methods such as phosphoramidite solid phase synthesis, the compound of formula (321) is reacted with the hydroxyl group on the terminal nucleotide in the nucleotide sequence, and then During the oxidation or vulcanization process, a phosphodiester linkage or phosphorothioate linkage is formed, and the compound of formula (321) is conjugated to siRNA.
在一些实施方式中,所述第1官能团含有被保护的羟基。在一些实施方式中,所述第2官能团包含可与固相载体反应的基团,所述反应提供包含固相载体的缀合分子。在一些实施方式中,所述第2官能团含有羧基、羧酸盐或亚磷酰胺,如式(C1)、(C2)或(C3)所示,当所述第2官能团包含羧基或羧酸盐时,式(321)化合物与固相载体,例如树脂上的羟基或氨基进行酯化反应或酰胺化反应,形成经羧酸酯键连接的包含固相载体的缀合分子。当所述第2官能团包含亚磷酰胺官能团时,式(321)化合物与通用固相载体,例如树脂上的羟基发生偶联反应,并经氧化形成经磷酸二酯键连接的包含固相载体的缀合分子。随后,以上述连接固相载体后的产物作为起始,按照亚磷酰胺固相合成方法依次连接核苷单体,获得连接有缀合基团的siRNA的正义链或反义链。在亚磷酰胺固相合成过程中,所述第1官能团发生脱保护,随后在偶联反应条件下与核苷单体上的亚磷酰胺基团发生偶联。In some embodiments, the first functional group contains a protected hydroxyl group. In some embodiments, the second functional group includes a group that can react with a solid-phase support, and the reaction provides a conjugate molecule including the solid-phase support. In some embodiments, the second functional group contains a carboxyl group, a carboxylate or phosphoramidite, as shown in formula (C1), (C2) or (C3), when the second functional group contains a carboxyl group or a carboxylate At this time, the compound of formula (321) undergoes an esterification reaction or amidation reaction with a solid support, such as a hydroxyl group or an amino group on the resin, to form a conjugated molecule containing the solid support connected via a carboxylate bond. When the second functional group contains a phosphoramidite functional group, the compound of formula (321) undergoes a coupling reaction with a general solid-phase carrier, such as a hydroxyl group on a resin, and is oxidized to form a solid-phase carrier-containing compound connected via a phosphodiester bond Conjugation molecule. Subsequently, starting from the product after connecting the solid phase carrier, the nucleoside monomers are sequentially connected according to the phosphoramidite solid phase synthesis method to obtain the sense strand or the antisense strand of the siRNA with the conjugation group attached. In the process of phosphoramidite solid-phase synthesis, the first functional group is deprotected and then coupled with the phosphoramidite group on the nucleoside monomer under coupling reaction conditions.
在一些实施方式中,所述第1官能团含有羟基或被保护的羟基;所述第2官能团含有经羧酸酯键连接的固相载体或经酰胺键连接的固相载体、或者经磷酸酯键连接的固相载体,如式(C1')或(C3')所示。此时,由式(321)化合物代替固相载体作为起始,按照亚磷酰胺固相合成方法依次连接核苷单体,获得连接有缀合基团的siRNA的正义链或反义链。In some embodiments, the first functional group contains a hydroxyl group or a protected hydroxyl group; the second functional group contains a solid-phase carrier connected via a carboxylate bond or a solid-phase carrier connected via an amide bond, or a phosphate bond The connected solid phase carrier is represented by formula (C1') or (C3'). At this time, starting with the compound of formula (321) instead of the solid phase carrier, nucleoside monomers are sequentially connected according to the phosphoramidite solid phase synthesis method to obtain the sense strand or antisense strand of the siRNA with the conjugation group attached.
在一些实施方式中,羧酸盐可以表示为-COO -M +,其中,M +是阳离子,例如选自金属阳离子, 铵阳离子NH 4 +,有机铵阳离子中的一种。在一种实施方式中,所述金属离子选自碱金属离子中的一种,如K +或Na +。出于提高溶解性、使反应顺利进行的考虑,在一些实施方式中,有机铵离子为三级胺形成的铵阳离子或季铵阳离子,如,三乙胺形成的铵离子或N,N-二异丙基乙胺形成的铵离子。在一些实施方式中,羧酸盐是三乙胺羧酸盐或N,N-二异丙基乙胺羧酸盐。 In some embodiments, the carboxylate may be expressed as -COO - M + , where M + is a cation, for example, one selected from the group consisting of metal cations, ammonium cations NH 4 + , and organic ammonium cations. In one embodiment, the metal ion is selected from one of alkali metal ions, such as K + or Na + . In order to improve the solubility and make the reaction proceed smoothly, in some embodiments, the organic ammonium ion is an ammonium cation formed by a tertiary amine or a quaternary ammonium cation, such as an ammonium ion formed by triethylamine or N,N-diamine Ammonium ion formed by isopropylethylamine. In some embodiments, the carboxylate is triethylamine carboxylate or N,N-diisopropylethylamine carboxylate.
在一些实施方式中,R 4含有式(B9)、(B10)、(B9')、(B10')、(B11)、(B12)、(B11')或(B12')所示的结构: In some embodiments, R 4 contains a structure represented by formula (B9), (B10), (B9'), (B10'), (B11), (B12), (B11') or (B12'):
Figure PCTCN2020091489-appb-000056
Figure PCTCN2020091489-appb-000056
其中,q 1为1-4的整数,q 2为1-10的整数,X为O或NH,M +为阳离子,R k为羟基保护基团,SPS表示固相载体,
Figure PCTCN2020091489-appb-000057
表示基团共价连接的位点。在一些实施方式中,q 1为1或2。在一些实施方式中,q 2为1-5的整数。在一些实施方式中,R 4含有式(B9)或(B10)所示的结构。在一些实施方式中,R 4含有式(B11)或(B12)所示的结构。
Wherein, q 1 is an integer of 1-4, q 2 is an integer of 1-10, X is O or NH, M + is a cation, R k is a hydroxyl protecting group, and SPS is a solid phase carrier,
Figure PCTCN2020091489-appb-000057
Represents the point at which the group is covalently attached. In some embodiments, q 1 is 1 or 2. In some embodiments, q 2 is an integer of 1-5. In some embodiments, R 4 contains a structure represented by formula (B9) or (B10). In some embodiments, R 4 contains a structure represented by formula (B11) or (B12).
在一些实施方式中,R k是Tr(三苯甲基)、MMTr(4-甲氧基三苯甲基)、DMTr(4,4'-双甲氧基三苯甲基)、TMTr(4,4',4”-三甲氧基三苯甲基)中的一种或多种。在一些实施方式中,R k可以是DMTr,即4,4'-双甲氧基三苯甲基(4,4'-dimethoxytrityl)。 In some embodiments, R k is Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-bismethoxytrityl), TMTr (4 ,4',4"-trimethoxytrityl). In some embodiments, R k may be DMTr, that is, 4,4'-bismethoxytrityl ( 4,4'-dimethoxytrityl).
L 1的定义如前所述。 The definition of L 1 is as described above.
在一些实施方式中,L 1被用于将M 1靶向基团连接至含氮骨架上的N原子,从而为式(308)所示的siRNA缀合物提供肝靶向功能。在一些实施方式中,L 1包含A1-A26中的任一个或其组合。 In some embodiments, L 1 is used to connect the M 1 targeting group to the N atom on the nitrogen-containing backbone, thereby providing the liver targeting function for the siRNA conjugate represented by formula (308). In some embodiments, L 1 comprises any one of A1-A26 or a combination thereof.
根据上述描述,本领域技术人员容易理解的是,相较于本领域公知的亚磷酰胺固相合成方法而言,可通过上述第1官能团以及任选的第2官能团,获得将缀合分子连接至核苷酸序列的任意可能的位置的式(308)所示的siRNA缀合物,例如,缀合分子连接至核苷酸序列的端部,缀合分子连接至核苷酸序列的末端。相应地,除非另有说明,以下涉及缀合物和/或缀合分子的制备的描述中,当提及“脱保护”、“偶联”、“盖帽”、“氧化”、“硫化”等反应时,应当理解为本领域公知的亚磷酰胺核酸固相合成方法中所涉及的反应条件和试剂也同样适用于这些反应。示例性的反应条件和试剂将在后文详细描述。According to the above description, those skilled in the art can easily understand that, compared with the phosphoramidite solid-phase synthesis method known in the art, the first functional group and the optional second functional group can be used to connect the conjugated molecule. The siRNA conjugate represented by formula (308) to any possible position of the nucleotide sequence, for example, the conjugate molecule is connected to the end of the nucleotide sequence, and the conjugate molecule is connected to the end of the nucleotide sequence. Correspondingly, unless otherwise stated, in the following descriptions related to the preparation of conjugates and/or conjugated molecules, when referring to "deprotection", "coupling", "cap", "oxidation", "vulcanization", etc. During the reaction, it should be understood that the reaction conditions and reagents involved in the phosphoramidite nucleic acid solid-phase synthesis method known in the art are also applicable to these reactions. Exemplary reaction conditions and reagents will be described in detail later.
在一些实施方式中,每个S 1独立地是M 1。在一些实施方式中,每个S 1独立地是M 1中至少一个活性羟基被羟基保护基团保护而形成的基团。在一些实施方式中,每个S 1独立地是M 1中任何存在的活性羟基全部被羟基保护基团保护而形成的基团。在一些实施方式中,任何本领域技术人员已知的羟基保护基团均可被用于保护M 1中的活性羟基。在一些实施方式中,被保护的羟基可以式YCOO-表示,其中,每个Y独立地选自于由C 1-C 10烷基和C 6-C 10芳基所组成的组,所述C 1-C 10烷基和C 6-C 10芳基任选地被一个或多个取代基取代,所述取代基选自于由卤素和C 1-C 6烷基所组成的组。在一些实施方式中,每个Y独立地选自于由以下基团所组成的组:甲基、三氟甲基、二氟甲基、单氟甲基、三氯甲基、二氯甲基、一氯甲基、乙基、正丙基、异丙基、苯基、卤苯基,以及C 1-C 6烷基苯基。 In some embodiments, each S 1 is independently M 1 . In some embodiments, each S 1 is independently a group formed by protecting at least one active hydroxyl group in M 1 by a hydroxyl protecting group. In some embodiments, each S 1 is independently a group formed by protecting all active hydroxyl groups present in M 1 by a hydroxyl protecting group. In some embodiments, any hydroxyl protecting group known to those skilled in the art can be used to protect the active hydroxyl group in M 1 . In some embodiments, the protected hydroxyl group can be represented by the formula YCOO-, wherein each Y is independently selected from the group consisting of C 1 -C 10 alkyl and C 6 -C 10 aryl, and the C The 1- C 10 alkyl group and the C 6 -C 10 aryl group are optionally substituted with one or more substituents selected from the group consisting of halogen and C 1 -C 6 alkyl. In some embodiments, each Y is independently selected from the group consisting of: methyl, trifluoromethyl, difluoromethyl, monofluoromethyl, trichloromethyl, dichloromethyl , Monochloromethyl, ethyl, n-propyl, isopropyl, phenyl, halophenyl, and C 1 -C 6 alkyl phenyl.
在一些实施方式中,每个S 1各自独立地选自于由式A46-A54所组成的组: In some embodiments, each S 1 is independently selected from the group consisting of formula A46-A54:
Figure PCTCN2020091489-appb-000058
Figure PCTCN2020091489-appb-000058
在一些实施方式中,S 1为式A49或A50。 In some embodiments, S 1 is formula A49 or A50.
在一些实施方式中,每个Y独立地选自甲基、三氟甲基、二氟甲基、一氟甲基、三氯甲基、二氯甲基、一氯甲基、乙基、正丙基、异丙基、苯基、卤代苯基以及烷基苯基中的一种;在一些实施方式中,Y为甲基。In some embodiments, each Y is independently selected from methyl, trifluoromethyl, difluoromethyl, monofluoromethyl, trichloromethyl, dichloromethyl, monochloromethyl, ethyl, normal One of propyl, isopropyl, phenyl, halophenyl, and alkylphenyl; in some embodiments, Y is methyl.
如前所述,式(308)所示的siRNA缀合物的制备方法还包括以下步骤:合成siRNA的另一链(例如,当上述步骤合成了连接有缀合分子的siRNA正义链时,还包括按照固相合成方法合成siRNA的反义链,反之亦然),分离正义链和反义链,以及退火。具体地,在分离步骤中,连接至 核苷酸序列和/或缀合分子的固相载体被切割下来,同时必要的保护基团被脱除(此时,式(321)化合物中的各S 1基团转化为对应的M 1靶向基团),获得连接有缀合分子的siRNA正义链(或反义链)以及对应的反义链(或正义链),正义链与反义链退火形成双链RNA结构,获得式(308)所示的siRNA缀合物。 As mentioned above, the preparation method of the siRNA conjugate represented by formula (308) also includes the following steps: synthesizing another strand of siRNA (for example, when the above step synthesizes the siRNA sense strand to which the conjugate molecule is connected, also Including the synthesis of the antisense strand of siRNA according to the solid-phase synthesis method, and vice versa), separation of the sense strand and antisense strand, and annealing. Specifically, in the separation step, the solid-phase carrier connected to the nucleotide sequence and/or the conjugate molecule is cleaved, and the necessary protective group is removed (at this time, each S in the compound of formula (321) 1 group is converted into the corresponding M 1 targeting group) to obtain the siRNA sense strand (or antisense strand) and the corresponding antisense strand (or sense strand) connected with the conjugate molecule, and the sense strand and antisense strand are annealed A double-stranded RNA structure is formed, and the siRNA conjugate represented by formula (308) is obtained.
在一些实施方式中,式(308)所示的siRNA缀合物的制备方法包含以下步骤:在偶联反应条件和偶联试剂存在下,将式(321)所示的化合物与正义链或反义链的3'端的第一个核苷单体接触,使式(321)所示的化合物连接上序列中第一个核苷酸,在亚磷酰胺固相合成的条件下,按照期望的正义链或反义链核苷酸种类和顺序,按照3'到5'的方向将核苷单体依次连接,合成siRNA的正义链或反义链;其中,式(321)化合物为R 4中含有第1官能团和第2官能团,第1官能团含有被保护的羟基,第2官能团具有如式(C1')或(C3')所示结构的化合物,与第一个核苷单体连接前,式(321)化合物经过脱保护;每个核苷单体的连接包括脱保护、偶联、盖帽、氧化或硫化四步反应;得到连接有缀合基团的核酸的正义链或反义链;在亚磷酰胺固相合成的条件下,按照反义链或正义链核苷酸种类和顺序,按照3'到5'的方向将核苷单体依次连接,合成核酸的反义链或正义链;每个核苷单体的连接包括脱保护、偶联、盖帽、氧化或硫化四步反应;脱除保护基并与固相载体切割,分离纯化获得正义链和反义链,退火。 In some embodiments, the preparation method of the siRNA conjugate represented by formula (308) includes the following steps: in the presence of coupling reaction conditions and coupling reagents, the compound represented by formula (321) is combined with the sense strand or reverse The first nucleoside monomer at the 3'end of the sense strand is contacted to connect the compound represented by formula (321) to the first nucleotide in the sequence. Under the conditions of phosphoramidite solid-phase synthesis, according to the desired sense Chain or antisense strand nucleotide type and sequence, nucleoside monomers are sequentially connected in the 3'to 5'direction to synthesize the sense strand or antisense strand of siRNA; wherein, the compound of formula (321) is contained in R 4 The first functional group and the second functional group, the first functional group contains a protected hydroxyl group, and the second functional group has a structure as shown in formula (C1') or (C3'). Before connecting with the first nucleoside monomer, the formula (321) The compound is deprotected; the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or sulfurization; the sense or antisense strand of the nucleic acid with the conjugation group is obtained; Under the conditions of phosphoramidite solid-phase synthesis, nucleoside monomers are sequentially connected in a 3'to 5'direction according to the type and sequence of the antisense strand or sense strand nucleotides to synthesize the antisense strand or sense strand of the nucleic acid; The connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization; removing the protective group and cutting with the solid phase carrier, separating and purifying to obtain the sense strand and antisense strand, and annealing.
在一些实施方式中,式(308)所示的siRNA缀合物的制备方法包含以下步骤:按照该双链siRNA中正义链或反义链的核苷酸种类和顺序,按照3'到5'的方向将核苷单体依次连接,合成正义链和反义链,每个核苷单体的连接包括脱保护、偶联、盖帽、氧化或硫化四步反应,得到连接在固相载体上的正义链和连接在固相载体上的反义链;在偶联反应条件和偶联试剂存在下,将式(321)所示的化合物与连接在固相载体上的正义链或连接在固相载体上的反义链接触,将式(321)化合物连接至正义链或反义链,其中,式(321)化合物是R 4中含有第1官能团,第1官能团为亚磷酰胺基团的式(321)化合物;脱除保护基并与固相载体切割,分别分离纯化,获得siRNA的正义链或反义链,退火,其中,所述siRNA的正义链或反义链上连接有缀合基团。 In some embodiments, the preparation method of the siRNA conjugate represented by formula (308) includes the following steps: according to the nucleotide type and sequence of the sense strand or the antisense strand in the double-stranded siRNA, in accordance with 3'to 5' The nucleoside monomers are connected in order to synthesize the sense strand and the antisense strand. The connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization to obtain a solid-phase carrier. The sense strand and the antisense strand attached to the solid phase carrier; in the presence of coupling reaction conditions and coupling reagents, the compound represented by formula (321) and the sense strand attached to the solid phase carrier or connected to the solid phase The antisense strand on the carrier is contacted to connect the compound of formula (321) to the sense strand or the antisense strand, wherein the compound of formula (321) is a formula in which R 4 contains the first functional group and the first functional group is a phosphoramidite group (321) compound; remove the protective group and cut with the solid phase carrier, separate and purify separately, obtain the sense strand or antisense strand of siRNA, and anneal, wherein the sense strand or antisense strand of the siRNA is connected with a conjugating group group.
在一些实施方式中,式A59中的P原子连接至siRNA中的正义链的3'末端,式(308)所示的siRNA缀合物的制备方法包括:In some embodiments, the P atom in formula A59 is connected to the 3'end of the sense strand in the siRNA, and the preparation method of the siRNA conjugate represented by formula (308) includes:
(1)脱除式(321)化合物(其中,式(321)化合物为R 4中含有第1官能团和第2官能团,第1官能团含有被保护的羟基OR k,第2官能团具有如式(C1')或(C3')所示结构的化合物)中的羟基保护基团R k;在偶联反应条件和偶联试剂存在下,将脱保护得到的产物与核苷单体接触,得到通过缀合分子连接至固相载体的核苷单体; (1) Removal of the compound of formula (321) (wherein, the compound of formula (321) is that R 4 contains a first functional group and a second functional group, the first functional group contains a protected hydroxyl group OR k , and the second functional group has the formula (C1 ') or (C3') the hydroxyl protecting group R k in the compound of the structure shown in (C3'); in the presence of coupling reaction conditions and coupling reagents, the product obtained by deprotection is contacted with the nucleoside monomer to obtain the A nucleoside monomer connected to a solid phase carrier;
(2)以该通过缀合分子连接至固相载体的核苷单体起始,按照3'-5'的方向通过亚磷酰胺固相合成方法合成siRNA的正义链;(2) Starting from the nucleoside monomer connected to the solid-phase carrier by the conjugation molecule, synthesize the sense strand of siRNA by phosphoramidite solid-phase synthesis in the 3'-5' direction;
(3)通过亚磷酰胺固相合成方法,合成siRNA的反义链;(3) Synthesize the antisense strand of siRNA by solid phase synthesis of phosphoramidite;
(4)分离出siRNA的正义链和反义链并退火,获得式(308)所示的siRNA缀合物。(4) The sense strand and antisense strand of the siRNA are separated and annealed to obtain the siRNA conjugate represented by formula (308).
其中,在步骤(1)中,脱除上述式(321)化合物中的保护基团R k的方法包括在脱保护条件下,将式(321)化合物与脱保护试剂接触。脱保护条件包括温度为0-50℃,在一些实施方式中为15-35℃,反应时间为30-300秒,在一些实施方式中为50-150秒,脱保护试剂可以选自三氟乙酸、三氯乙酸、二氯乙酸、一氯乙酸中的一种或多种,在一些实施方式中为二氯乙酸。脱保护试剂与式(321)化合物的摩尔比为10:1-1000:1,在一些实施方式中为50:1-500:1。 Wherein, in step (1), the method for removing the protective group R k in the compound of formula (321) includes contacting the compound of formula (321) with a deprotection reagent under deprotection conditions. The deprotection conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 30-300 seconds, and in some embodiments 50-150 seconds, the deprotection reagent may be selected from trifluoroacetic acid One or more of trichloroacetic acid, dichloroacetic acid, and monochloroacetic acid, in some embodiments, dichloroacetic acid. The molar ratio of the deprotection reagent to the compound of formula (321) is 10:1 to 1000:1, in some embodiments 50:1 to 500:1.
所述偶联反应条件和偶联试剂可使用任何适合于上述偶联反应的条件和试剂。在一些实施方式中,可使用与所采用的固相合成方法中的偶联反应相同的条件与试剂。The coupling reaction conditions and coupling reagents can use any conditions and reagents suitable for the aforementioned coupling reaction. In some embodiments, the same conditions and reagents as the coupling reaction in the solid phase synthesis method used can be used.
在一些实施方式中,所述偶联反应的条件包括反应温度为0-50℃,在一些实施方式中为15-35℃。式(321)化合物与核苷单体的摩尔比为1:1-1:50,在一些实施方式中为1:2-1:5;式(321)化合物和偶联试剂的摩尔比可以为1:1-1:50,在一些实施方式中为1:3-1:10,反应时间为200-3000秒,在一些实施方式中为500-1500秒。偶联试剂选自1H-四氮唑、5-乙硫基1H-四氮唑、5-苄硫基1H-四氮唑中的一种或多种,在一些实施方式中为5-乙硫基1H-四氮唑。所述偶联反应可在有机溶剂中进行,所述有机溶剂选自无水乙腈、无水DMF、无水二氯甲烷中的一种或多种,在一些实施方式中为无水乙腈。相对于式(321)化合物,所述有机溶剂的用量为3-50L/mol,在一些实施方式中为5-20L/mol。In some embodiments, the conditions of the coupling reaction include a reaction temperature of 0-50°C, and in some embodiments, 15-35°C. The molar ratio of the compound of formula (321) to the nucleoside monomer is 1:1-1:50, and in some embodiments is 1:2-1:5; the molar ratio of the compound of formula (321) and the coupling reagent can be 1:1-1:50, in some embodiments 1:3-1:10, and the reaction time is 200-3000 seconds, and in some embodiments 500-1500 seconds. The coupling reagent is selected from one or more of 1H-tetrazole, 5-ethylthio 1H-tetrazole, 5-benzylthio 1H-tetrazole, in some embodiments 5-ethylsulfide Base 1H-tetrazolium. The coupling reaction may be carried out in an organic solvent, and the organic solvent is selected from one or more of anhydrous acetonitrile, anhydrous DMF, and anhydrous methylene chloride, and in some embodiments is anhydrous acetonitrile. Relative to the compound of formula (321), the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
在步骤(2)中,通过亚磷酰胺核酸固相合成的方法,利用上述步骤制备的通过缀合分子连接至固相载体的核苷单体起始,按照3'-5'的方向合成siRNA缀合物的正义链SS。此时,缀合基团连接至所得到的正义链的3'末端。In step (2), by the method of phosphoramidite nucleic acid solid-phase synthesis, using the nucleoside monomers prepared by the above steps and connected to the solid-phase carrier by the conjugate molecule, siRNA is synthesized according to the 3'-5' direction The sense strand SS of the conjugate. At this time, the conjugating group is attached to the 3'end of the resulting sense chain.
步骤(2)和(3)中所述固相合成的其它条件,包括核苷单体脱保护条件,脱保护试剂种类和用量,偶联反应条件,偶联试剂的种类和用量,盖帽反应的条件,盖帽试剂的种类和用量,氧化反应条件,氧化试剂种类和用量,硫化反应条件,硫化试剂种类和用量采用本领域中常规使用的各种试剂、用量和条件。Other conditions for the solid-phase synthesis described in steps (2) and (3) include deprotection conditions of nucleoside monomers, types and amounts of deprotection reagents, coupling reaction conditions, types and amounts of coupling reagents, and capping reaction conditions. The conditions, the type and amount of the capping reagent, the oxidation reaction conditions, the type and amount of the oxidizing reagent, the vulcanization reaction conditions, and the type and amount of the vulcanizing reagent adopt various reagents, amounts and conditions conventionally used in the art.
例如,在一些实施方式中,步骤(2)和(3)中所述固相合成可使用如下条件:For example, in some embodiments, the solid-phase synthesis in steps (2) and (3) may use the following conditions:
核苷单体脱保护条件包括温度为0-50℃,在一些实施方式中为15-35℃,反应时间为30-300秒,在一些实施方式中为50-150秒,脱保护试剂可以选自三氟乙酸、三氯乙酸、二氯乙酸、一氯乙酸、中的一种或多种,在一些实施方式中为二氯乙酸。脱保护试剂与固相载体上4,4'-二甲氧基三苯甲基保护基的的摩尔比可以为2:1-100:1,在一些实施方式中为3:1-50:1。The deprotection conditions of the nucleoside monomer include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 30-300 seconds, and in some embodiments 50-150 seconds, the deprotection reagent can be selected One or more of trifluoroacetic acid, trichloroacetic acid, dichloroacetic acid, monochloroacetic acid, and in some embodiments is dichloroacetic acid. The molar ratio of the deprotection reagent to the 4,4'-dimethoxytrityl protecting group on the solid support can be 2:1-100:1, and in some embodiments, 3:1-50:1 .
偶联反应条件包括温度为0-50℃,在一些实施方式中为15-35℃,固相载体上连接的核酸序列与核苷单体的摩尔比可以为1:1-1:50,在一些实施方式中为1:5-1:15;固相载体上连接的核酸序列和偶联试剂的摩尔比为1:1-1:100,在一些实施方式中为1:50-1:80,反应时间和偶联试剂的选择与前述相同。The coupling reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, and the molar ratio of the nucleic acid sequence linked to the solid support to the nucleoside monomer can be 1:1-1:50. In some embodiments, it is 1:5-1:15; the molar ratio of the nucleic acid sequence connected to the solid-phase carrier and the coupling reagent is 1:1-1:100, and in some embodiments, it is 1:50-1:80 The reaction time and the choice of coupling reagents are the same as above.
盖帽反应条件包括温度为0-50℃,在一些实施方式中为15-35℃,反应时间为5-500秒,在一些实施方式中为10-100秒,盖帽试剂的选择与前述相同。盖帽试剂的总量与固相载体上连接的核酸序列的摩尔比为1:100-100:1,在一些实施方式中为1:10-10:1。在盖帽试剂使用等摩尔量的乙酸酐与N-甲基咪唑的情况下,乙酸酐、N-甲基咪唑以及固相载体上连接的核酸序列的摩尔比可为1:1:10-10:10:1,在一些实施方式中为1:1:2-2:2:1。The capping reaction conditions include a temperature of 0-50°C, 15-35°C in some embodiments, a reaction time of 5-500 seconds, and 10-100 seconds in some embodiments, and the selection of the capping reagent is the same as described above. The molar ratio of the total amount of capping reagent to the nucleic acid sequence linked on the solid phase carrier is 1:100-100:1, and in some embodiments, 1:10-10:1. In the case where the capping reagent uses equimolar amounts of acetic anhydride and N-methylimidazole, the molar ratio of acetic anhydride, N-methylimidazole and the nucleic acid sequence linked to the solid-phase carrier can be 1:1:10-10: 10:1, and in some embodiments 1:1:2-2:2:1.
氧化反应条件包括温度为0-50℃,在一些实施方式中为15-35℃,反应时间为1-100秒,在一些实施方式中为5-50秒,氧化试剂在一些实施方式中为碘(在一些实施方式中,以碘水的形式提供)。氧化试剂与偶联步骤中固相载体上连接的核酸序列的摩尔比可以为1:1-100:1,在一些实施方式中为5:1-50:1。在一些实施方式中,所述氧化反应在四氢呋喃:水:吡啶=3:1:1-1:1:3的混合溶剂中进行。硫化反应条件包括温度为0-50℃,在一些实施方式中为15-35℃,反应时间为50-2000秒,在一些实施方式中为100-1000秒,硫化试剂在一些实施方式中为氢化黄原素。硫化试剂与偶联步骤中固相载体上连接的核酸序列的摩尔比为10:1-1000:1,在一些实施方式中为10:1-500:1。在一些实施方式中,所述硫化反应在乙腈:吡啶=1:3-3:1的混合溶剂中进行。The oxidation reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 1-100 seconds, and in some embodiments 5-50 seconds, the oxidizing reagent is iodine in some embodiments (In some embodiments, it is provided in the form of iodine water). The molar ratio of the oxidizing reagent to the nucleic acid sequence connected to the solid support in the coupling step can be 1:1-100:1, and in some embodiments, 5:1-50:1. In some embodiments, the oxidation reaction is performed in a mixed solvent of tetrahydrofuran:water:pyridine=3:1:1-1:1:3. The vulcanization reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 50-2000 seconds, and in some embodiments 100-1000 seconds, the vulcanization reagent is hydrogenation in some embodiments. Xanthan. The molar ratio of the vulcanizing reagent to the nucleic acid sequence linked to the solid support in the coupling step is 10:1 to 1000:1, and in some embodiments, 10:1 to 500:1. In some embodiments, the sulfurization reaction is carried out in a mixed solvent of acetonitrile:pyridine=1:3-3:1.
在将所有核苷单体连接之后,退火之前,该方法还包括分离出siRNA的正义链和反义链。分离的方法为本领域技术人员所公知,一般包括将合成得到的核苷酸序列从固相载体上切割下来,脱除碱基上、磷酸基上和配体上的保护基团,纯化和脱盐。After all nucleoside monomers are connected and before annealing, the method also includes separating the sense strand and antisense strand of the siRNA. The separation method is well known to those skilled in the art, and generally includes cutting the synthesized nucleotide sequence from the solid support, removing the protective groups on the base, phosphate and ligand, purification and desalting .
将合成得到的核苷酸序列从固相载体上切割下来,并脱除碱基上、磷酸基上和配体上的保护基团可按照siRNA合成中常规的切割和脱保护方法进行。例如,将得到的连接有固相载体的核苷酸序列与浓氨水接触;在脱保护的过程中,A46-A54基团的保护基团YCOO-转化为羟基,S 1基团转化为相应的M 1基团,生成式(308)所示的siRNA缀合物。其中,所述浓氨水可以是25-30重量%的氨水,浓氨水的用量与目标siRNA序列相比可以为0.2ml/μmol-0.8ml/μmol。 Cleaving the synthesized nucleotide sequence from the solid support and removing the protective groups on the base, phosphate and ligand can be carried out according to the conventional cutting and deprotection methods in siRNA synthesis. For example, the obtained nucleotide sequence connected with the solid phase carrier is contacted with concentrated ammonia; in the process of deprotection, the protecting group YCOO- of the A46-A54 group is converted into a hydroxyl group, and the S 1 group is converted into the corresponding The M 1 group produces the siRNA conjugate represented by formula (308). Wherein, the concentrated ammonia water can be 25-30% by weight ammonia water, and the amount of concentrated ammonia water can be 0.2ml/μmol-0.8ml/μmol compared with the target siRNA sequence.
在所合成的核苷酸序列上存在至少一个2'-TBDMS保护时,所述方法还包括将脱除了固相载体的核苷酸序列与三乙胺三氢氟酸盐接触,以脱除该2'-TBDMS保护。此时,所得到的目标siRNA序列中的相应核苷酸具有游离的2'-羟基。三乙胺三氢氟酸盐纯品的用量与目标siRNA序列相比可以为0.4ml/μmol-1.0ml/μmol。这样即可得到式(308)所示的siRNA缀合物。When there is at least one 2'-TBDMS protection on the synthesized nucleotide sequence, the method further includes contacting the nucleotide sequence removed from the solid phase carrier with triethylamine trihydrofluoride to remove the 2'-TBDMS protection. At this time, the corresponding nucleotide in the obtained target siRNA sequence has a free 2'-hydroxyl group. Compared with the target siRNA sequence, the dosage of pure triethylamine trihydrofluoride can be 0.4ml/μmol-1.0ml/μmol. In this way, the siRNA conjugate represented by formula (308) can be obtained.
纯化和脱盐的方法是本领域技术人员熟知的。例如,可利用制备型离子色谱纯化柱,通过NaBr或NaCl的梯度洗脱,完成核酸的纯化;产品收集合并后,可采用反相色谱纯化柱进行脱盐。Methods of purification and desalination are well known to those skilled in the art. For example, a preparative ion chromatography purification column can be used to complete the purification of nucleic acid through gradient elution of NaBr or NaCl; after the product is collected and combined, a reverse phase chromatography purification column can be used for desalting.
这样得到的式(308)所示的siRNA缀合物中,核苷酸之间的磷酸二酯键或硫代磷酸二酯键中的非桥接氧原子或硫原子基本与钠离子结合,式(308)所示的siRNA缀合物基本以钠盐形式存在。可以采用熟知的离子交换方法,用氢离子和/或其他阳离子取代所述钠离子,得到其他形式的式(308)所示的siRNA缀合物。所述阳离子如前所述。In the siRNA conjugate represented by formula (308) thus obtained, the non-bridging oxygen atom or sulfur atom in the phosphodiester bond or phosphorothioate bond between the nucleotides is basically bonded to the sodium ion, and the formula ( The siRNA conjugate shown in 308) basically exists in the form of sodium salt. A well-known ion exchange method can be used to replace the sodium ions with hydrogen ions and/or other cations to obtain other forms of siRNA conjugates represented by formula (308). The cation is as described above.
在合成过程中,可随时对核酸序列的纯度和分子量进行检测,更好地把控合成质量,此类检测的方法为本领域技术人员所公知。例如,可通过离子交换色谱检测核酸纯度,并通过液质联用色谱(LC-MS)测定分子量。During the synthesis process, the purity and molecular weight of the nucleic acid sequence can be tested at any time to better control the synthesis quality. Such detection methods are well known to those skilled in the art. For example, the purity of nucleic acid can be detected by ion exchange chromatography, and the molecular weight can be determined by liquid mass spectrometry (LC-MS).
退火的方法也是本领域技术人员熟知的。例如,可简单地将所合成的正义链(SS链)与反义链(AS链)以等摩尔比混合在注射用水中加热至70-95℃,随后室温冷却,使其通过氢键形成双链结构。这样即可得到式(308)所示的siRNA缀合物。The annealing method is also well known to those skilled in the art. For example, the synthesized sense strand (SS chain) and antisense strand (AS chain) can be simply mixed in an equimolar ratio, heated to 70-95°C in water for injection, and then cooled at room temperature to form a double bond through hydrogen bonding. Chain structure. In this way, the siRNA conjugate represented by formula (308) can be obtained.
在获得所述缀合物后,在一些实施方式中,还可利用例如液质联用色谱等方法,通过分子量检测等方式对所合成的式(308)所示的siRNA缀合物进行表征,确定所合成的siRNA缀合物为目标设计的式(308)所示的siRNA缀合物,且所合成的siRNA的序列为期望的siRNA的序列,例如为表1a-1g中所列的序列之一。After the conjugate is obtained, in some embodiments, the synthesized siRNA conjugate represented by formula (308) can be characterized by methods such as liquid-mass spectrometry chromatography, etc., by means of molecular weight detection. It is determined that the synthesized siRNA conjugate is the siRNA conjugate represented by formula (308) designed for the target, and the sequence of the synthesized siRNA is the sequence of the desired siRNA, for example, one of the sequences listed in Tables 1a-1g One.
式(321)所示化合物可以通过以下制备方法得到:该方法包括在有机溶剂中,在酯化反应条件下,以及在碱和酯化催化剂存在下,将式(313)所示化合物与环状酸酐接触,离子交换,分离得到式(321)所示化合物:The compound represented by formula (321) can be obtained by the following preparation method: the method includes combining the compound represented by formula (313) with a cyclic compound in an organic solvent, under esterification reaction conditions, and in the presence of a base and an esterification catalyst. Contact with acid anhydride, ion exchange, and separation to obtain the compound represented by formula (321):
Figure PCTCN2020091489-appb-000059
Figure PCTCN2020091489-appb-000059
其中,n1、n3、m1、m2、m3、R 10、R 11、R 12、R 13、R 14、R 15、L 1、S 1各自的定义和可选择的范围如前所述; Wherein, the definitions and selectable ranges of n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , and S 1 are as described above;
R 6为提供式(321)中R 4的基团;在一些实施方式中,R 6具有式(A61)所示的结构: R 6 is a group providing R 4 in formula (321); in some embodiments, R 6 has the structure shown in formula (A61):
Figure PCTCN2020091489-appb-000060
Figure PCTCN2020091489-appb-000060
其中,R i为能够实现与含氮骨架上的N原子连接、与R kO连接并且连接有一个游离羟基的任意基团,R k为羟基保护基团。此时,所获得的是R 4中含有作为羟基保护基团的第1官能团和第2官能团,所述第2官能团含有如式(C1)或(C2)所示结构的式(321)化合物。 Among them, R i is any group that can be connected to the N atom on the nitrogen-containing skeleton, connected to R k O and connected to a free hydroxyl group, and R k is a hydroxyl protecting group. At this time, what is obtained is that R 4 contains a first functional group and a second functional group as a hydroxyl protecting group, and the second functional group contains a compound of formula (321) having a structure represented by formula (C1) or (C2).
所述酯化反应条件包括反应温度为0-100℃,反应时间为8-48小时,在一些实施方式中,所述酯化反应条件为反应温度为10-40℃,反应时间为20-30小时。The esterification reaction conditions include a reaction temperature of 0-100°C and a reaction time of 8-48 hours. In some embodiments, the esterification reaction conditions are a reaction temperature of 10-40°C and a reaction time of 20-30. hour.
在一些实施方式中,所述有机溶剂包含环氧类溶剂、醚类溶剂、卤代烷类溶剂、二甲基亚砜、N,N-二甲基甲酰胺和N,N-二异丙基乙胺中的一种或多种。在一些实施方式中,所述环氧类溶剂为二氧六环和/或四氢呋喃,所述醚类溶剂为乙醚和/或甲基叔丁基醚,所述卤代烷类溶剂为二氯甲烷、三氯甲烷和1,2-二氯乙烷中的一种或多种。在一些实施方式中,所述有机溶剂为二氯甲烷。相对于所述式(313)所示化合物,所述有机溶剂的用量为3-50L/mol,在一些实施方式中为5-20L/mol。In some embodiments, the organic solvent includes epoxy-based solvents, ether-based solvents, halogenated alkane-based solvents, dimethylsulfoxide, N,N-dimethylformamide, and N,N-diisopropylethylamine One or more of. In some embodiments, the epoxy solvent is dioxane and/or tetrahydrofuran, the ether solvent is diethyl ether and/or methyl tert-butyl ether, and the halogenated alkane solvent is dichloromethane, trihydrofuran One or more of methyl chloride and 1,2-dichloroethane. In some embodiments, the organic solvent is dichloromethane. Relative to the compound represented by formula (313), the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
在一些实施方式中,所述环状酸酐为丁二酸酐、戊二酸酐、己二酸酐或庚二酸酐中的一种,在一些实施方式中为丁二酸酐。所述环状酸酐与所述式(313)所示化合物的摩尔比为1:1-10:1,在一些实施方式中为2:1-5:1。In some embodiments, the cyclic anhydride is one of succinic anhydride, glutaric anhydride, adipic anhydride, or pimelic anhydride, and in some embodiments, succinic anhydride. The molar ratio of the cyclic acid anhydride to the compound represented by formula (313) is 1:1-10:1, and in some embodiments, 2:1-5:1.
所述酯化催化剂可以是任何对该酯化反应起到催化作用的催化剂,例如该催化剂可以是4-二甲氨基吡啶。所述催化剂与式(313)所示化合物的摩尔比为1:1-10:1,在一些实施方式中为2:1-5:1。The esterification catalyst may be any catalyst that catalyzes the esterification reaction, for example, the catalyst may be 4-dimethylaminopyridine. The molar ratio of the catalyst to the compound represented by formula (313) is 1:1-10:1, and in some embodiments, 2:1-5:1.
在一些实施方式中,所述碱可以是任意的无机碱,有机碱或者它们的结合。考虑溶解性和产物稳定性,所述碱可以是例如三级胺。在一些实施方式中,所述三级胺为三乙胺或N,N-二异丙基乙胺。所述三级胺与式(313)所示化合物的摩尔比为1:1-20:1,在一些实施方式中为3:1-10:1。In some embodiments, the base may be any inorganic base, organic base or a combination thereof. Considering solubility and product stability, the base may be, for example, a tertiary amine. In some embodiments, the tertiary amine is triethylamine or N,N-diisopropylethylamine. The molar ratio of the tertiary amine to the compound represented by formula (313) is 1:1-20:1, and in some embodiments, 3:1-10:1.
所述离子交换作用是将式(321)化合物转化为期望的羧酸或羧酸盐的形式,离子交换的方法为本领域技术人员所公知,可以使用合适的离子交换溶液和交换条件,得到具有M +阳离子的缀合分子,在此不做详述。在一些实施方式中,所述离子交换反应使用三乙胺磷酸盐溶液进行,所述三乙胺磷酸盐溶液的浓度为0.2-0.8M,在一些实施方式中,所述三乙胺磷酸盐溶液的浓度为0.4-0.6M,相对于式(313)化合物,所述三乙胺磷酸盐溶液的用量为3-6L/mol,在进一步的实施方式中为4-5L/mol。 The ion exchange effect is to convert the compound of formula (321) into the desired form of carboxylic acid or carboxylate. The method of ion exchange is well known to those skilled in the art. Suitable ion exchange solutions and exchange conditions can be used to obtain The conjugate molecule of M + cation will not be detailed here. In some embodiments, the ion exchange reaction is performed using a triethylamine phosphate solution, and the concentration of the triethylamine phosphate solution is 0.2-0.8M. In some embodiments, the triethylamine phosphate solution The concentration of the triethylamine phosphate solution is 0.4-0.6M, relative to the compound of formula (313), the amount of the triethylamine phosphate solution is 3-6L/mol, in a further embodiment 4-5L/mol.
可使用任何合适的分离方法从反应混合物中分离式(321)化合物。在一些实施方式中,可通过蒸发除去溶剂、随后通过色谱方法分离式(321)化合物,例如,可使用如下两种色谱条件进行分离:(1)正相纯化硅胶:200-300目硅胶填料,使用含1wt‰三乙胺的二氯甲烷:甲醇=100:18-100:20梯度洗脱;或者(2)反相纯化:C18、C8反相填料,使用甲醇:乙腈=0.1:1-1:0.1梯度洗脱。在一些实施方式中,可以直接除去溶剂得到式(321)化合物粗产品,该粗产品可以直接用于后续反应。Any suitable separation method can be used to separate the compound of formula (321) from the reaction mixture. In some embodiments, the solvent can be removed by evaporation, and then the compound of formula (321) can be separated by chromatographic methods. For example, the following two chromatographic conditions can be used for separation: (1) normal phase purification silica gel: 200-300 mesh silica gel filler, Use dichloromethane containing 1wt‰ of triethylamine: methanol = 100:18-100:20 gradient elution; or (2) reverse phase purification: C18, C8 reverse phase packing, use methanol: acetonitrile = 0.1:1-1 :0.1 gradient elution. In some embodiments, the solvent can be directly removed to obtain a crude product of the compound of formula (321), which can be directly used in subsequent reactions.
在一些实施方式中,式(321)化合物的制备方法还进一步包括在缩合反应条件下,在有机溶剂中,在缩合剂、缩合催化剂和三级胺的存在下,将上述离子交换反应得到的产物进一步与含有氨基或羟基的固相载体进行接触。此时,所获得的是R 4中含有第1官能团和第2官能团,第1官能团含有羟基保护基团,第2官能团含有如式(C1')所示结构的式(321)化合物。 In some embodiments, the preparation method of the compound of formula (321) further comprises under the conditions of the condensation reaction, in an organic solvent, in the presence of a condensation agent, a condensation catalyst and a tertiary amine, the product obtained by the above ion exchange reaction It is further contacted with a solid phase carrier containing an amino group or a hydroxyl group. At this time, what is obtained is that R 4 contains a first functional group and a second functional group, the first functional group contains a hydroxyl protecting group, and the second functional group contains a compound of formula (321) having a structure represented by formula (C1′).
所述固相载体为固相合成siRNA中所用的载体中的一种,其中的一些为本领域技术人员所公知。例如,所述固相载体可以选自含有活性羟基或氨基官能团的固相载体,在一些实施方式中,所述固相载体为氨基树脂或羟基树脂。在一些实施方式中,所述氨基或羟基树脂具有如下参数:粒径100-400目(mesh),表面氨基或羟基载量为0.2-0.5mmol/g。所述式(321)所示化合物与固相载体的用量比为10-400μmol化合物/每克固相载体(μmol/g)。在一些实施方式中,所述式(321)所示化合物与固相载体的用量比为50-200μmol/g。The solid-phase carrier is one of the carriers used in solid-phase synthesis of siRNA, some of which are well known to those skilled in the art. For example, the solid phase carrier may be selected from solid phase carriers containing active hydroxyl groups or amino functional groups. In some embodiments, the solid phase carrier is an amino resin or a hydroxyl resin. In some embodiments, the amino or hydroxyl resin has the following parameters: a particle size of 100-400 mesh, and a surface amino or hydroxyl loading of 0.2-0.5 mmol/g. The dosage ratio of the compound represented by the formula (321) to the solid phase carrier is 10-400 μmol compound per gram of solid phase carrier (μmol/g). In some embodiments, the dosage ratio of the compound represented by formula (321) to the solid phase carrier is 50-200 μmol/g.
所述有机溶剂可以是本领域技术人员已知的任何合适的溶剂或混合溶剂。在一些实施方式中,所述有机溶剂为乙腈、环氧类溶剂、醚类溶剂、卤代烷类溶剂、二甲基亚砜、N,N-二甲基甲酰胺和N,N-二异丙基乙胺中的一种或多种。在一些实施方式中,所述环氧类溶剂为二氧六环和/或四氢呋喃,所述醚类溶剂为乙醚和/或甲基叔丁基醚,所述卤代烷类溶剂为二氯甲烷、三氯甲烷和1,2-二氯乙烷中的一种或多种。在一些实施方式中,所述有机溶剂为乙腈。相对于式(321)化合物,所述有机溶剂的用量为20-200L/mol,在一些实施方式中为50-100L/mol。The organic solvent may be any suitable solvent or mixed solvent known to those skilled in the art. In some embodiments, the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl. One or more of ethylamine. In some embodiments, the epoxy solvent is dioxane and/or tetrahydrofuran, the ether solvent is diethyl ether and/or methyl tert-butyl ether, and the halogenated alkane solvent is dichloromethane, trihydrofuran One or more of methyl chloride and 1,2-dichloroethane. In some embodiments, the organic solvent is acetonitrile. Relative to the compound of formula (321), the amount of the organic solvent is 20-200 L/mol, and in some embodiments, 50-100 L/mol.
在一些实施方式中,所述缩合剂可以是苯并三唑-1-基-氧基三吡咯烷基鏻六氟磷酸酯/盐(benzotriazol-1-yl-oxytripyrrolidino phosphonium hexafluorophosphate,PyBop)、3-二乙氧基磷酰基-1,2,3-苯唑4(3H)-酮(3-(Diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)-one,DEPBT)和/或O-苯并三唑-四甲基脲六氟磷酸盐/酯(O-benzotriazol-1-yl-tetramethyluronium hexafluorophosphate),在一些实施方式中,所述缩合剂为O-苯并三氮唑-四甲基脲六氟磷酸盐/酯。所述缩合剂与式(321)所示化合物的摩尔比为1:1-20:1,在其它实施方式中为1:1-5:1。In some embodiments, the condensing agent may be benzotriazol-1-yl-oxytripyrrolidino phosphonium hexafluorophosphate (PyBop), 3- Diethoxyphosphoryl-1,2,3-benzotriazin-4(3H)-one (3-(Diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)-one, DEPBT) and/or O- O-benzotriazol-1-yl-tetramethyluronium hexafluorophosphate (O-benzotriazol-1-yl-tetramethyluronium hexafluorophosphate), in some embodiments, the condensing agent is O-benzotriazol-tetramethyl Urea hexafluorophosphate. The molar ratio of the condensing agent to the compound represented by formula (321) is 1:1-20:1, and in other embodiments is 1:1-5:1.
在一些实施方式中,所述三级胺为三乙胺和/或N,N-二异丙基乙胺,在一些实施方式中为N,N-二异丙基乙胺;所述三级胺与式(321)所示化合物的摩尔比为1:1-20:1,在一些实施方式中为1:1-5:1。In some embodiments, the tertiary amine is triethylamine and/or N,N-diisopropylethylamine, in some embodiments it is N,N-diisopropylethylamine; the tertiary The molar ratio of amine to the compound represented by formula (321) is 1:1-20:1, and in some embodiments, 1:1-5:1.
在一些实施方式中,式(321)化合物的制备方法还可以包括在盖帽反应条件下,在有机溶剂中,将得到的缩合产物与盖帽试剂和酰化催化剂接触,分离得到式(321)所示化合物。所述盖帽反应的作用在于除去任何尚未反应完全的活性反应官能团,以避免在后续反应中产生不必要的副产物。所述盖帽反应的条件包括反应温度为0-50℃,在一些实施方式中为15-35℃,反应的时间为1-10h,在一些实施方式中为3-6h。盖帽试剂可以使用siRNA固相合成中所使用的盖帽试剂,siRNA固相合成中所使用的盖帽试剂为本领域技术人员所公知。In some embodiments, the method for preparing the compound of formula (321) may also include contacting the obtained condensation product with a capping reagent and an acylation catalyst in an organic solvent under capping reaction conditions to obtain the formula (321) Compound. The function of the capping reaction is to remove any reactive functional groups that have not yet been completely reacted, so as to avoid unnecessary by-products in subsequent reactions. The conditions of the capping reaction include a reaction temperature of 0-50°C, in some embodiments 15-35°C, and a reaction time of 1-10h, and in some embodiments 3-6h. The capping reagent can be the capping reagent used in siRNA solid-phase synthesis, and the capping reagent used in siRNA solid-phase synthesis is well known to those skilled in the art.
在一些实施方式中,所述盖帽试剂由盖帽试剂1(cap1)和盖帽试剂2(cap2)组成,其中,盖帽试剂1为N-甲基咪唑,在一些实施方式中以N-甲基咪唑的吡啶/乙腈混合溶液形式提供,其中,吡啶与乙腈的体积比为1:10-1:1,在一些实施方式中为1:3-1:1,吡啶与乙腈的总体积与N-甲基咪唑的体积比为1:1-10:1,在一些实施方式中为3:1-7:1。所述盖帽试剂2为乙酸酐。在一些实施方式中,所述盖帽试剂2以乙酸酐的乙腈溶液形式提供,其中,乙酸酐和乙腈的体积比为1:1-1:10,在进一步的实施方式中为1:2-1:6。In some embodiments, the capping reagent consists of capping reagent 1 (cap1) and capping reagent 2 (cap2), wherein capping reagent 1 is N-methylimidazole, and in some embodiments, it is Pyridine/acetonitrile is provided as a mixed solution, wherein the volume ratio of pyridine to acetonitrile is 1:10-1:1, in some embodiments, 1:3-1:1, and the total volume of pyridine and acetonitrile is compared with N-methyl The volume ratio of imidazole is 1:1-10:1, and in some embodiments, 3:1-7:1. The capping reagent 2 is acetic anhydride. In some embodiments, the capping reagent 2 is provided in the form of a solution of acetic anhydride in acetonitrile, wherein the volume ratio of acetic anhydride and acetonitrile is 1:1-1:10, and in a further embodiment is 1:2-1 :6.
在一些实施方式中,所述N-甲基咪唑的吡啶/乙腈混合溶液的体积与式(321)化合物的质量之比为5ml/g-50ml/g,在一些实施方式中为15ml/g-30ml/g。所述乙酸酐的乙腈溶液的体积与式(321)化合物的质量之比为0.5ml/g-10ml/g,在一些实施方式中为1ml/g-5ml/g。In some embodiments, the ratio of the volume of the pyridine/acetonitrile mixed solution of N-methylimidazole to the mass of the compound of formula (321) is 5ml/g-50ml/g, and in some embodiments 15ml/g- 30ml/g. The ratio of the volume of the acetonitrile solution of acetic anhydride to the mass of the compound of formula (321) is 0.5ml/g-10ml/g, and in some embodiments is 1ml/g-5ml/g.
在一些实施方式中,盖帽试剂使用等摩尔量的乙酸酐与N-甲基咪唑。在一些实施方式中,所述有机溶剂为乙腈、环氧类溶剂、醚类溶剂、卤代烷类溶剂、二甲基亚砜、N,N-二甲基甲酰胺和N,N-二异丙基乙胺中的一种或多种。在一些实施方式中,所述有机溶剂为乙腈。相对于式(321)化合物,所述有机溶剂的用量为10-50L/mol,在一些实施方式中为5-30L/mol。In some embodiments, the capping reagent uses equimolar amounts of acetic anhydride and N-methylimidazole. In some embodiments, the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl. One or more of ethylamine. In some embodiments, the organic solvent is acetonitrile. Relative to the compound of formula (321), the amount of the organic solvent is 10-50 L/mol, and in some embodiments, 5-30 L/mol.
在一些实施方式中,所述酰化催化剂可以选自任何可用于酯化缩合或酰胺化化缩合的催化剂,例如碱性杂环化合物。在一些实施方式中,所述酰化催化剂为4-二甲氨基吡啶。所述催化剂与式 (321)所示化合物的质量之比为0.001:1-1:1,在一些实施方式中为0.01:1-0.1:1。In some embodiments, the acylation catalyst may be selected from any catalyst that can be used for esterification condensation or amidation condensation, such as basic heterocyclic compounds. In some embodiments, the acylation catalyst is 4-dimethylaminopyridine. The mass ratio of the catalyst to the compound represented by formula (321) is 0.001:1 to 1:1, in some embodiments 0.01:1 to 0.1:1.
在一些实施方式中,可使用任何合适的分离方法从反应混合物中分离式(321)化合物。在一些实施方式中,可通过以有机溶剂充分洗涤,并过滤,去除未反应的反应物、过量的盖帽试剂及其它杂质,得到式(321)化合物,所述有机溶剂选自乙腈、二氯甲烷、甲醇,在一些实施方式中为乙腈。In some embodiments, any suitable separation method may be used to separate the compound of formula (321) from the reaction mixture. In some embodiments, the compound of formula (321) can be obtained by fully washing with an organic solvent and filtering to remove unreacted reactants, excess capping reagents and other impurities. The organic solvent is selected from acetonitrile and dichloromethane. , Methanol, in some embodiments acetonitrile.
在一些实施方式中,式(321)所示缀合分子的制备方法包括在有机溶剂中,在偶联反应条件下,以及在偶联试剂存在下,将式(313)所示化合物与亚磷酰二胺接触,分离得到式(321)所示化合物。此时,所获得的是R 4中含有第1官能团和第2官能团,第1官能团含有羟基保护基团,第2官能团含有如式(C3)所示结构的式(321)化合物。 In some embodiments, the preparation method of the conjugate molecule represented by formula (321) includes combining the compound represented by formula (313) with phosphorous in an organic solvent, under coupling reaction conditions, and in the presence of a coupling reagent. The diamide is contacted and separated to obtain the compound represented by formula (321). At this time, what is obtained is that R 4 contains a first functional group and a second functional group, the first functional group contains a hydroxyl protecting group, and the second functional group contains a compound of formula (321) having a structure represented by formula (C3).
在一些实施方式中,偶联反应条件包括温度可以为0-50℃,例如为15-35℃,式(313)化合物与亚磷酰二胺的摩尔比可以为1:1-1:50,例如为1:5-1:15;式(313)化合物和偶联试剂的摩尔比可以为1:1-1:100,例如为1:50-1:80;反应时间可以为200-3000秒,例如为500-1500秒。所述亚磷酰二胺例如可使用双(二异丙基氨基)(2-氰基乙氧基)膦,其可商购获得或按照本领域中公知的方法合成获得。偶联试剂选自1H-四氮唑、5-乙硫基1H-四氮唑、5-苄硫基1H-四氮唑中的一种或多种,例如为5-乙硫基1H-四氮唑。所述偶联反应可在有机溶剂中进行,所述有机溶剂选自无水乙腈、无水DMF、无水二氯甲烷中的一种或多种,例如为无水乙腈。在一些实施方式中,相对于式(313)化合物,所述有机溶剂的用量为3-50L/mol,例如可以为5-20L/mol。通过进行该偶联反应,式(313)化合物中的羟基与亚磷酰二胺反应形成亚磷酰胺基团。在一些实施方式中,可以直接除去溶剂得到式(321)化合物粗产品,该粗产品可以直接用于后续反应。In some embodiments, the coupling reaction conditions include that the temperature can be 0-50°C, for example 15-35°C, and the molar ratio of the compound of formula (313) to the phosphoramidite can be 1:1-1:50, For example, it is 1:5-1:15; the molar ratio of formula (313) compound and coupling reagent can be 1:1-1:100, for example, 1:50-1:80; reaction time can be 200-3000 seconds , For example, 500-1500 seconds. The phosphoramidite may be, for example, bis(diisopropylamino)(2-cyanoethoxy)phosphine, which is commercially available or synthesized according to a method known in the art. The coupling reagent is selected from one or more of 1H-tetrazole, 5-ethylthio 1H-tetrazole, 5-benzylthio 1H-tetrazole, for example 5-ethylthio 1H-tetrazole Azole. The coupling reaction can be carried out in an organic solvent, and the organic solvent is selected from one or more of anhydrous acetonitrile, anhydrous DMF, and anhydrous methylene chloride, for example, anhydrous acetonitrile. In some embodiments, relative to the compound of formula (313), the amount of the organic solvent is 3-50 L/mol, for example, 5-20 L/mol. By carrying out this coupling reaction, the hydroxyl group in the compound of formula (313) reacts with the phosphoramidite to form a phosphoramidite group. In some embodiments, the solvent can be directly removed to obtain a crude product of the compound of formula (321), which can be directly used in subsequent reactions.
在一些实施方式中,式(321)化合物的制备方法还进一步包括以下步骤:在偶联反应条件下,在有机溶剂中,以及在偶联试剂存在下,将分离得到的产物进一步与含有羟基的固相载体进行接触。随后,经盖帽反应、氧化反应,分离得到式(321)化合物。此时,所获得的是R 4中含有第1官能团和第2官能团,第1官能团含有羟基保护基团,第2官能团具有如式(C3')所示结构的式(321)化合物。 In some embodiments, the preparation method of the compound of formula (321) further includes the following steps: under coupling reaction conditions, in an organic solvent, and in the presence of a coupling reagent, the separated product is further combined with a hydroxyl-containing product. The solid support is brought into contact. Subsequently, after capping reaction and oxidation reaction, the compound of formula (321) is isolated. In this case, obtained is R 4 contains a first functional group and a second functional group, the first functional group containing a hydroxyl protective group, the second functional group having a compound of the formula (C3 ') of formula (321) structure shown in FIG.
在一些实施方式中,所述固相载体为本领域中公知的可用于核酸固相合成的固相载体,例如,可以是经脱保护反应后的市售的通用固相载体(
Figure PCTCN2020091489-appb-000061
UnyLinker TM 300 Oligonucleotide Synthesis Support,Kinovate Life Sciences公司,结构如式B80所示):
In some embodiments, the solid phase carrier is a solid phase carrier known in the art that can be used for nucleic acid solid phase synthesis, for example, it may be a commercially available general solid phase carrier after deprotection reaction (
Figure PCTCN2020091489-appb-000061
UnyLinker TM 300 Oligonucleotide Synthesis Support, Kinovate Life Sciences company, structure shown in formula B80):
Figure PCTCN2020091489-appb-000062
Figure PCTCN2020091489-appb-000062
脱保护反应为本领域技术人员所公知。在一些实施方式中,脱保护条件包括温度为0-50℃,例如为15-35℃;反应时间为30-300秒,例如为50-150秒。脱保护试剂可以选自三氟乙酸、三氯乙酸、二氯乙酸、一氯乙酸中的一种或多种,在一些实施方式中,脱保护试剂为二氯乙酸。脱保护试剂与固定相上的-DMTr(4,4'-二甲氧基三苯甲基)保护基的摩尔比为2:1-100:1,例如为3:1-50:1。通过进行所述脱保护,在所述固相载体表面上获得具有反应活性的游离羟基,便于进行后续的偶联反应。The deprotection reaction is well known to those skilled in the art. In some embodiments, the deprotection conditions include a temperature of 0-50°C, such as 15-35°C, and a reaction time of 30-300 seconds, such as 50-150 seconds. The deprotection reagent can be selected from one or more of trifluoroacetic acid, trichloroacetic acid, dichloroacetic acid, and monochloroacetic acid. In some embodiments, the deprotection reagent is dichloroacetic acid. The molar ratio of the deprotection reagent to the -DMTr (4,4'-dimethoxytrityl) protecting group on the stationary phase is 2:1-100:1, for example, 3:1-50:1. By performing the deprotection, a reactive free hydroxyl group is obtained on the surface of the solid support, which facilitates subsequent coupling reactions.
偶联反应条件以及偶联试剂的选择可如上所述。通过进行该偶联反应,脱保护反应中形成的游离羟基与亚磷酰胺基团反应形成亚磷酸酯连接。The coupling reaction conditions and the selection of coupling reagents can be as described above. Through the coupling reaction, the free hydroxyl group formed in the deprotection reaction reacts with the phosphoramidite group to form a phosphite linkage.
在一些实施方式中,盖帽反应条件包括温度为0-50℃,例如为15-35℃,反应时间为5-500秒,例如为10-100秒,所述盖帽反应在盖帽试剂存在下进行。盖帽试剂的选择和用量可如上所述。In some embodiments, the capping reaction conditions include a temperature of 0-50°C, such as 15-35°C, and a reaction time of 5-500 seconds, such as 10-100 seconds, and the capping reaction is performed in the presence of a capping reagent. The selection and amount of capping reagent can be as described above.
氧化反应条件包括温度为0-50℃,例如可以为15-35℃,反应时间为1-100秒,例如可以为 5-50秒,氧化试剂例如可以为碘(在一些实施方式中,以碘水的形式提供)。在一些实施方式中,氧化试剂与连接至固相载体的核酸序列的摩尔比为1:1-100:1,例如可以为5:1-50:1。在一些实施方式中,所述氧化反应在四氢呋喃:水:吡啶=3:1:1-1:1:3的混合溶剂中进行。The oxidation reaction conditions include a temperature of 0-50°C, such as 15-35°C, a reaction time of 1-100 seconds, such as 5-50 seconds, and an oxidizing reagent such as iodine (in some embodiments, iodine Provided in the form of water). In some embodiments, the molar ratio of the oxidizing reagent to the nucleic acid sequence linked to the solid phase carrier is 1:1-100:1, for example, it may be 5:1-50:1. In some embodiments, the oxidation reaction is performed in a mixed solvent of tetrahydrofuran:water:pyridine=3:1:1-1:1:3.
在一些实施方式中,R 6为式B7或B8基团中的一种, In some embodiments, R 6 is one of the groups of formula B7 or B8,
Figure PCTCN2020091489-appb-000063
Figure PCTCN2020091489-appb-000063
其中q 2、R k的定义如前所述, The definition of q 2, R k is as mentioned above,
此时,式(313)所示化合物可以通过以下制备方法得到:在有机溶剂中,在酰胺化反应条件下,以及在酰胺化反应缩合剂和三级胺存在下,将式(314)所示化合物与式(A-1)所示化合物或式(A-2)化合物接触,随后进行分离:At this time, the compound represented by formula (313) can be obtained by the following preparation method: in an organic solvent, under amidation reaction conditions, and in the presence of a condensing agent and tertiary amine for amidation reaction, the formula (314) The compound is contacted with the compound represented by formula (A-1) or the compound represented by formula (A-2), and then separated:
Figure PCTCN2020091489-appb-000064
Figure PCTCN2020091489-appb-000064
其中,n1、n3、m1、m2、m3、R 10、R 11、R 12、R 13、R 14、R 15、L 1、S 1、q 2和R k各自的定义和可选择的范围如前所述。 Among them, n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , S 1 , q 2 and R k are each defined and selectable ranges as As mentioned earlier.
所述酰胺化反应条件可包括反应温度为0-100℃,反应时间为1-48小时,在一些实施方式中,所述酰胺化反应条件为反应温度为10-40℃,反应时间为2-16小时。The amidation reaction conditions may include a reaction temperature of 0-100°C and a reaction time of 1-48 hours. In some embodiments, the amidation reaction conditions may include a reaction temperature of 10-40°C and a reaction time of 2- 16 hours.
在一些实施方式中,所述有机溶剂为醇类溶剂、环氧类溶剂、醚类溶剂、卤代烷类溶剂、二甲基亚砜、N,N-二甲基甲酰胺和N,N-二异丙基乙胺中的一种或多种。所述醇类溶剂在一些实施方式中为甲醇、乙醇、丙醇中的一种或多种,在一些实施方式中为乙醇。所述环氧类溶剂在一些实施方式中为二氧六环和/或四氢呋喃。所述醚类溶剂在一些实施方式中为乙醚和/或甲基叔丁基醚。所述卤代烷类溶剂在一些实施方式中为二氯甲烷、三氯甲烷和1,2-二氯乙烷中的一种或多种。在一些实施方式中,所述有机溶剂为二氯甲烷。相对于式(314)化合物,有机溶剂用量为3-50L/mol,在进一步的实施方式中为3-20L/mol。In some embodiments, the organic solvent is alcohol solvent, epoxy solvent, ether solvent, halogenated alkane solvent, dimethyl sulfoxide, N,N-dimethylformamide and N,N-diiso One or more of propylethylamine. The alcohol solvent is one or more of methanol, ethanol, and propanol in some embodiments, and ethanol in some embodiments. The epoxy solvent is dioxane and/or tetrahydrofuran in some embodiments. The ether solvent is diethyl ether and/or methyl tert-butyl ether in some embodiments. The halogenated alkane solvent is one or more of dichloromethane, chloroform and 1,2-dichloroethane in some embodiments. In some embodiments, the organic solvent is dichloromethane. Relative to the compound of formula (314), the amount of the organic solvent is 3-50 L/mol, and in a further embodiment, 3-20 L/mol.
在一些实施方式中,所述酰胺化反应缩合剂为苯并三唑-1-基-氧基三吡咯烷基鏻六氟磷酸盐/酯、3-二乙氧基磷酰基-1,2,3-苯唑4(3H)-酮、4-(4,6-二甲氧基三嗪-2-基)-4-甲基吗啉盐酸盐、2-乙氧基-1-乙氧碳酰基-1,2-二氢喹啉(EEDQ)或O-苯并三氮唑-四甲基脲六氟磷酸盐/酯,在进一步的实施方式中为3-二乙氧基磷酰基-1,2,3-苯唑4(3H)-酮。所述酰胺化反应缩合剂与式(314)所示化合物的摩尔比可以为1:1-10:1,在一些实施方式中为2.5:1-5:1。In some embodiments, the amidation reaction condensing agent is benzotriazol-1-yl-oxytripyrrolidinylphosphonium hexafluorophosphate, 3-diethoxyphosphoryl-1,2, 3-Benzazole 4(3H)-one, 4-(4,6-dimethoxytriazin-2-yl)-4-methylmorpholine hydrochloride, 2-ethoxy-1-ethoxy Carbonyl-1,2-dihydroquinoline (EEDQ) or O-benzotriazole-tetramethylurea hexafluorophosphate, in a further embodiment 3-diethoxyphosphoryl- 1,2,3-Benzazole 4(3H)-one. The molar ratio of the amidation reaction condensing agent to the compound represented by formula (314) may be 1:1-10:1, and in some embodiments, 2.5:1-5:1.
在一些实施方式中,所述三级胺为三乙胺或N,N-二异丙基乙胺,在进一步的实施方式中为N,N-二异丙基乙胺。所述三级胺与式(314)所示化合物的摩尔比为3:1-20:1,在一些实施方式中为5:1-10:1。In some embodiments, the tertiary amine is triethylamine or N,N-diisopropylethylamine, and in a further embodiment is N,N-diisopropylethylamine. The molar ratio of the tertiary amine to the compound represented by formula (314) is 3:1-20:1, and in some embodiments, 5:1-10:1.
在一些实施方式中,式(A-1)和式(A-2)化合物可通过任何适当的方式制备。例如,当R k 为DMTr基团时,可通过甘油酸钙与DMTrCl反应制备式(A-1)化合物;类似地,可先将3-氨基-1,2-丙二醇与环状酸酐接触,随后再与DMTrCl反应制备式(A-2)化合物,所述环状酸酐可以是碳原子数为4-13、在一些实施方式中为4-8的环状酸酐。本领域技术人员容易理解的是,所述环状酸酐的选择对应于(A-2)化合物中q 2的不同值,例如,当所述环状酸酐为丁二酸酐时,q 2=1,当所述环状酸酐为戊二酸酐时,q 2=2,以此类推。 In some embodiments, the compounds of formula (A-1) and formula (A-2) can be prepared in any suitable manner. For example, when R k is a DMTr group, the compound of formula (A-1) can be prepared by reacting calcium glycerate with DMTrCl; similarly, 3-amino-1,2-propanediol can be contacted with cyclic anhydride first, and then The compound of formula (A-2) is prepared by reacting with DMTrCl. The cyclic anhydride may be a cyclic anhydride having 4-13 carbon atoms, and in some embodiments, 4-8. It is easily understood by those skilled in the art that the selection of the cyclic anhydride corresponds to different values of q 2 in the compound (A-2). For example, when the cyclic anhydride is succinic anhydride, q 2 = 1, When the cyclic anhydride is glutaric anhydride, q 2 =2, and so on.
在一些变型中,也可通过使式(314)所示化合物依次与所述环状酸酐、3-氨基-1,2-丙二醇和DMTrCl反应,制备式(313)化合物。本领域技术人员容易理解的是,这些变型不会影响式(313)化合物的结构与功能,并且这些变型是本领域技术人员在上述方法的基础上容易实现的。In some variations, the compound of formula (313) can also be prepared by sequentially reacting the compound represented by formula (314) with the cyclic anhydride, 3-amino-1,2-propanediol and DMTrCl. It is easily understood by those skilled in the art that these modifications will not affect the structure and function of the compound of formula (313), and these modifications are easily realized by those skilled in the art on the basis of the above methods.
与上述类似地,可使用任何合适的分离方法从反应混合物中分离式(313)化合物。在一些实施方式中,可通过蒸发除去溶剂、随后通过色谱方法分离式(313)化合物,例如,可使用如下两种色谱条件进行分离:(1)正相纯化硅胶:200-300目硅胶填料,使用石油醚:乙酸乙酯:二氯甲烷:N,N-二甲基甲酰胺=1:1:1:0.5-1:1:1:0.6梯度洗脱;以及(2)反相纯化:C18、C8反相填料,使用甲醇:乙腈=0.1:1-1:0.1梯度洗脱。在一些实施方式中,可以直接除去溶剂得到式(313)化合物粗产品,该粗产品可以直接用于后续反应。Similar to the above, any suitable separation method can be used to separate the compound of formula (313) from the reaction mixture. In some embodiments, the solvent can be removed by evaporation, and then the compound of formula (313) can be separated by chromatographic methods. For example, the following two chromatographic conditions can be used for separation: (1) Normal phase purified silica gel: 200-300 mesh silica gel filler, Use petroleum ether: ethyl acetate: dichloromethane: N, N-dimethylformamide=1:1:1:0.5-1:1:1:1:0.6 gradient elution; and (2) reverse phase purification: C18 , C8 reverse phase packing, using methanol: acetonitrile = 0.1:1-1:0.1 gradient elution. In some embodiments, the solvent can be directly removed to obtain a crude product of the compound of formula (313), which can be directly used in subsequent reactions.
在一些实施方式中,式(314)所示化合物可以通过以下制备方法得到:该方法包括在有机溶剂中,在酰胺化反应缩合剂和三级胺存在下,在缩合反应条件下,将式(320)所示化合物与式(316)所示化合物接触,随后进行分离:In some embodiments, the compound represented by formula (314) can be obtained by the following preparation method: the method includes in an organic solvent, in the presence of a condensing agent for amidation reaction and a tertiary amine, under condensation reaction conditions, the formula ( The compound represented by 320) is contacted with the compound represented by formula (316) and then separated:
Figure PCTCN2020091489-appb-000065
Figure PCTCN2020091489-appb-000065
其中,n1、n3、m1、m2、m3、R 10、R 11、R 12、R 13、R 14、R 15各自的定义和可选择的范围如前所述。 Wherein, n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , and R 15 have the same definitions and selectable ranges as described above.
式(316)化合物可使用例如J.Am.Chem.Soc.2014,136,16958-16961中所公开的化合物,或者,式(316)化合物可由本领域技术人员通过各种方法制备,例如,可参照美国专利US 8,106,022B2实施例1中所公开的方法制备某些式(316)化合物,以引用的方式将以上文献的全部内容整体并入本文。The compound of formula (316) can be prepared by, for example, the compounds disclosed in J. Am. Chem. Soc. 2014, 136, 16958-16961, or the compound of formula (316) can be prepared by a person skilled in the art by various methods, for example, Certain compounds of formula (316) were prepared with reference to the method disclosed in Example 1 of US Patent No. 8,106,022 B2, and the entire contents of the above documents are incorporated herein by reference in their entirety.
在一些实施方式中,所述缩合反应条件包括反应温度为0-100℃,反应时间为0.1-24小时,在一些实施方式中为反应温度为10-40℃,反应时间为0.5-16小时。In some embodiments, the condensation reaction conditions include a reaction temperature of 0-100°C and a reaction time of 0.1-24 hours, and in some embodiments, a reaction temperature of 10-40°C and a reaction time of 0.5-16 hours.
考虑到期望产物式(314)化合物的结构,所述式(316)所示化合物与所述式(320)所示化合物的摩尔比应当基于与式(320)中n1与n3的和而确定。在一些实施方式中,例如,当n1+n3=3时,为了保证反应完全而不过度,式(316)所示化合物与所述式(320)所示化合物的摩尔比可以为3:1-3.5:1,在一些实施方式中为3.01:1-3.15:1。Taking into account the structure of the compound of formula (314) as the desired product, the molar ratio of the compound represented by formula (316) to the compound represented by formula (320) should be determined based on the sum of n1 and n3 in formula (320). In some embodiments, for example, when n1+n3=3, in order to ensure that the reaction is complete and not excessive, the molar ratio of the compound represented by formula (316) to the compound represented by formula (320) may be 3:1- 3.5:1, in some embodiments 3.01:1-3.15:1.
在一些实施方式中,所述有机溶剂为乙腈、环氧类溶剂、醚类溶剂、卤代烷类溶剂、二甲基亚砜、N,N-二甲基甲酰胺和N,N-二异丙基乙胺中的一种或多种,所述环氧类溶剂在一些实施方式中为二氧六环和/或四氢呋喃,所述醚类溶剂在一些实施方式中为乙醚和/或甲基叔丁基醚,所述卤代烷类溶剂在一些实施方式中为二氯甲烷、三氯甲烷和1,2-二氯乙烷中的一种或多种,在一些实施方式中,所述有机溶剂为二氯甲烷。相对于式(320)化合物,所述有机溶剂的用量为3-50L/mol,在一些实施方式中为5-20L/mol。In some embodiments, the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl. One or more of ethylamine, the epoxy solvent is dioxane and/or tetrahydrofuran in some embodiments, and the ether solvent is diethyl ether and/or methyl tert-butyl in some embodiments In some embodiments, the halogenated alkane solvent is one or more of dichloromethane, chloroform and 1,2-dichloroethane. In some embodiments, the organic solvent is two Methyl chloride. Relative to the compound of formula (320), the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
在一些实施方式中,所述酰胺化反应缩合剂为苯并三唑-1-基-氧基三吡咯烷基鏻六氟磷酸盐/酯、3-二乙氧基磷酰基-1,2,3-苯唑4(3H)-酮(DEPBT)、O-苯并三氮唑-四甲基脲六氟磷酸盐/酯、4-(4,6-二甲氧基三嗪-2-基)-4-甲基吗啉盐酸盐或1-羟基苯并三唑中的一种或多种,在进一步的实施方式中为苯并三唑-1-基-氧基三吡咯烷基鏻六氟磷酸盐/酯和1-羟基苯并三唑的混合物,其中苯并三唑-1-基-氧基三吡咯烷基鏻六氟磷酸盐/酯和1-羟基苯并三唑为等摩尔用量。所述总的酰胺化反应缩合剂与式(316)所示化合物的摩尔比可以为1:1-3:1,在一些实施方式中为1.05:1-1.5:1。In some embodiments, the amidation reaction condensing agent is benzotriazol-1-yl-oxytripyrrolidinylphosphonium hexafluorophosphate, 3-diethoxyphosphoryl-1,2, 3-Benzazole 4(3H)-one (DEPBT), O-benzotriazole-tetramethylurea hexafluorophosphate/ester, 4-(4,6-dimethoxytriazin-2-yl) ) One or more of 4-methylmorpholine hydrochloride or 1-hydroxybenzotriazole, in a further embodiment, benzotriazol-1-yl-oxytripyrrolidinyl phosphonium A mixture of hexafluorophosphate and 1-hydroxybenzotriazole, wherein benzotriazol-1-yl-oxytripyrrolidinyl phosphonium hexafluorophosphate and 1-hydroxybenzotriazole are etc. Molar amount. The molar ratio of the total amidation reaction condensing agent to the compound represented by formula (316) may be 1:1-3:1, and in some embodiments, 1.05:1-1.5:1.
所述三级胺可以为N-甲基吗啉、三乙胺或N,N-二异丙基乙胺,在一些实施方式中为N-甲基吗啉;所述三级胺与式(316)所示化合物的摩尔比可以为2:1-10:1,在一些实施方式中为2:1-5:1。The tertiary amine can be N-methylmorpholine, triethylamine, or N,N-diisopropylethylamine, and in some embodiments, it is N-methylmorpholine; the tertiary amine has the same formula ( The molar ratio of the compound shown in 316) may be 2:1-10:1, and in some embodiments, 2:1-5:1.
与上述类似地,可使用任何合适的分离方法从反应混合物中分离式(314)化合物。在一些实施方式中,可通过蒸发除去溶剂、随后通过色谱方法分离式(314)化合物例如,可使用如下两种色谱条件进行分离:(1)正相纯化硅胶:200-300目硅胶填料,使用二氯甲烷:甲醇=100:5-100:7梯度洗脱;以及(2)反相纯化:C18、C8反相填料,使用甲醇:乙腈=0.1:1-1:0.1梯度洗脱。在一些实施方式中,可以直接除去溶剂得到式(314)化合物粗产品,该粗产品可以直接用于后续反应。Similar to the above, any suitable separation method can be used to separate the compound of formula (314) from the reaction mixture. In some embodiments, the solvent can be removed by evaporation, and then the compound of formula (314) can be separated by chromatography. For example, the following two chromatographic conditions can be used for separation: (1) Normal phase purification silica gel: 200-300 mesh silica gel filler, using Dichloromethane: methanol = 100:5-100:7 gradient elution; and (2) reverse phase purification: C18, C8 reverse phase packing, using methanol: acetonitrile = 0.1:1 to 1:0.1 gradient elution. In some embodiments, the solvent can be directly removed to obtain a crude product of the compound of formula (314), which can be directly used in subsequent reactions.
式(320)化合物可商购获得,或者由本领域技术人员使用已知的方法获得。例如,当m1=m2=m3=3,n1=1,n3=2,且每个R 10、R 11、R 12、R 13、R 14、R 15均为H时,式(320)化合物可自阿法埃莎公司商购获得。 The compound of formula (320) is commercially available or can be obtained by a person skilled in the art using known methods. For example, when m1=m2=m3=3, n1=1, n3=2, and each of R 10 , R 11 , R 12 , R 13 , R 14 , and R 15 is H, the compound of formula (320) can Commercially purchased from Alfa Aesar.
本公开的siRNA缀合物也可以与药学上可接受的其它辅料联用,该辅料可以为本领域常规采用的各种制剂或化合物的一种或多种,详情可参见上文关于本公开的药物组合物的描述。The siRNA conjugate of the present disclosure can also be used in combination with other pharmaceutically acceptable excipients, which can be one or more of various formulations or compounds conventionally used in the art. For details, please refer to the above about the present disclosure. Description of the pharmaceutical composition.
本公开的siRNA、药物组合物及缀合物的应用Application of siRNA, pharmaceutical composition and conjugate of the present disclosure
在一些实施方式中,本公开提供了本公开的siRNA和/或药物组合物和/或siRNA缀合物在制备用于治疗和/或预防由PCSK9基因异常表达引起的疾病或生理状况的药物中的用途。In some embodiments, the present disclosure provides that the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure are used in the preparation of drugs for the treatment and/or prevention of diseases or physiological conditions caused by abnormal expression of PCSK9 gene the use of.
在一些实施方式中,本公开提供了一种预防和/或治疗由PCSK9基因异常表达引起的疾病或生理状况的方法,该方法包括将有效量的本公开的siRNA和/或药物组合物和/或siRNA缀合物给予有需要的受试者。In some embodiments, the present disclosure provides a method for preventing and/or treating diseases or physiological conditions caused by abnormal expression of the PCSK9 gene, the method comprising applying an effective amount of the siRNA and/or pharmaceutical composition of the present disclosure and/or Or the siRNA conjugate is administered to a subject in need.
通过将本公开的siRNA活性成分给予有需要的受试者,可以通过RNA干扰的机制达到预防和/或治疗由PCSK9基因异常表达引起的疾病或生理状况的目的。因此,本公开的siRNA和/或药物组合物和/或siRNA缀合物可用于预防和/或治疗由PCSK9基因异常表达引起的疾病或生理状况,或用于制备用于预防和/或治疗由PCSK9基因异常表达引起的疾病或生理状况的药物。By administering the siRNA active ingredients of the present disclosure to subjects in need, the purpose of preventing and/or treating diseases or physiological conditions caused by the abnormal expression of the PCSK9 gene can be achieved through the mechanism of RNA interference. Therefore, the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure can be used to prevent and/or treat diseases or physiological conditions caused by the abnormal expression of the PCSK9 gene, or to prepare for the prevention and/or treatment of Drugs for diseases or physiological conditions caused by abnormal expression of PCSK9 gene.
在一些实施方式中,由PCSK9基因异常表达引起的疾病或生理状况指高胆固醇血症,以及由此引发的动脉粥样硬化、冠心病、高血压等心血管疾病。In some embodiments, the disease or physiological condition caused by the abnormal expression of the PCSK9 gene refers to hypercholesterolemia, and cardiovascular diseases such as atherosclerosis, coronary heart disease, and hypertension caused thereby.
本文所使用的术语“给药/给予”是指通过使得至少部分地将本公开的siRNA、药物组合物和/或siRNA缀合物定位于期望的位点以产生期望效果的方法或途径,将本公开的siRNA、药物组合物和/或siRNA缀合物放置入受试者体内。适于本公开方法的给药途径包括局部给药和全身给药。一般而言,局部给药导致与受试者体循环相比将更多siRNA缀合物递送至特定位点;而全身给药导致将本公开的siRNA、药物组合物和/或siRNA缀合物递送至受试者的基本体循环。考虑到本公开可以提供预防和/或治疗高胆固醇血症的手段,在一些实施方式中采用能够将药物递送至肝脏的给药方式。The term "administration/administration" as used herein refers to a method or approach that allows the siRNA, pharmaceutical composition and/or siRNA conjugate of the present disclosure to be at least partially positioned at a desired site to produce a desired effect. The siRNA, pharmaceutical composition, and/or siRNA conjugate of the present disclosure are placed in a subject. The routes of administration suitable for the methods of the present disclosure include local administration and systemic administration. Generally speaking, local administration results in the delivery of more siRNA conjugates to a specific site compared to the subject's systemic circulation; while systemic administration results in the delivery of the siRNA, pharmaceutical composition and/or siRNA conjugate of the present disclosure Basic systemic circulation to the subject. Considering that the present disclosure can provide a means to prevent and/or treat hypercholesterolemia, in some embodiments, an administration method capable of delivering drugs to the liver is adopted.
可通过本领域已知的任何合适途径向受试者给药,所述途径包括但不仅限于:口服或胃肠外途径,如静脉内给药、肌肉内给药、皮下给药、经皮给药、气道给药(气雾剂)、肺部给药、鼻部给药、直肠给药和局部给药(包括口腔含化给药和舌下给药)。给药频率可以是每天、每周、每两周、每三周、每个月、每两个月、每三个月、每半年或每年1次或多次。The subject can be administered to the subject by any suitable route known in the art, including but not limited to: oral or parenteral routes, such as intravenous administration, intramuscular administration, subcutaneous administration, and transdermal administration. Medicine, airway administration (aerosol), pulmonary administration, nasal administration, rectal administration and topical administration (including buccal administration and sublingual administration). The frequency of administration can be one or more times per day, every week, every two weeks, every three weeks, every month, every two months, every three months, every six months, or every year.
本公开所述的siRNA、药物组合物或siRNA缀合物的使用剂量可为本领域常规的剂量,所述剂量可以根据各种参数、尤其是受试者的年龄、体重和性别来确定。可在细胞培养或实验动物中通过标准药学程序测定毒性和疗效,例如测定LD 50(使50%的群体死亡的致死剂量)、ED 50(在量反应中指能引起50%最大反应强度的剂量,在质反应中指能引起50%实验对象出现阳性反应时的剂量)或IC 50(量反应被抑制一半时抑制剂/药物的浓度)。可基于由细胞培养分析和动物研究得到的数据得出人用剂量的范围。 The dosage of the siRNA, pharmaceutical composition or siRNA conjugate described in the present disclosure can be a conventional dosage in the art, and the dosage can be determined according to various parameters, especially the age, weight and sex of the subject. Toxicity and efficacy can be measured in cell culture or laboratory animals through standard pharmaceutical procedures, such as measuring LD 50 (lethal dose that kills 50% of the population), ED 50 (in quantitative response, the dose that can cause 50% of the maximum response intensity, In the qualitative response, it refers to the dose that can cause a positive response in 50% of the subjects) or IC 50 (the concentration of inhibitor/drug when the quantitative response is inhibited by half). The range of human doses can be derived based on data obtained from cell culture analysis and animal studies.
在给予本公开所述的siRNA、药物组合物和/或siRNA缀合物时,例如,对于雄性或雌性、3-5岁龄、体重2-6kg的食蟹猴,以siRNA的量计:(i)对于siRNA缀合物,其siRNA用量可以为0.001-100mg/kg体重,在一些实施方式中为0.01-50mg/kg体重,在一些实施方式中为0.05-20mg/kg体重,另一些实施方式中为0.1-15mg/kg体重,另一些实施方式中为0.1-10mg/kg体重;(ii)对于siRNA与药学上可接受的载体形成的药物组合物,其siRNA用量可以为0.001-50mg/kg体重,在一些实施方式中为0.01-10mg/kg体重,在一些实施方式中为0.05-5mg/kg体重,在一些实施方式中为0.1-3mg/kg体重。When administering the siRNA, pharmaceutical composition and/or siRNA conjugate described in the present disclosure, for example, for male or female cynomolgus monkeys aged 3-5 years and weighing 2-6 kg, the amount of siRNA is calculated as: ( i) For siRNA conjugates, the amount of siRNA can be 0.001-100 mg/kg body weight, in some embodiments 0.01-50 mg/kg body weight, in some embodiments 0.05-20 mg/kg body weight, and in other embodiments In some embodiments, it is 0.1-15 mg/kg body weight, and in other embodiments, it is 0.1-10 mg/kg body weight; (ii) For a pharmaceutical composition formed by siRNA and a pharmaceutically acceptable carrier, the amount of siRNA may be 0.001-50 mg/kg The body weight is 0.01-10 mg/kg body weight in some embodiments, 0.05-5 mg/kg body weight in some embodiments, and 0.1-3 mg/kg body weight in some embodiments.
在一些实施方式中,本公开提供了一种抑制肝细胞中PCSK9基因表达的方法,该方法包括将有效量的本公开的siRNA和/或药物组合物和/或siRNA缀合物与所述肝细胞接触,将本公开的siRNA和/或药物组合物和/或siRNA缀合物导入所述肝细胞,通过RNA干扰的机制达到抑制肝细胞中PCSK9基因表达的目的。所述肝细胞可以选自SMMC-7721、HepG2、Huh7等肝癌细胞系或分离的肝原代细胞。在一些实施方式中,所述细胞为HepG2肝癌细胞。In some embodiments, the present disclosure provides a method for inhibiting PCSK9 gene expression in liver cells, the method comprising combining an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure with the liver. Cell contact, the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure are introduced into the hepatocytes, and the purpose of inhibiting PCSK9 gene expression in the hepatocytes is achieved through the mechanism of RNA interference. The liver cells may be selected from liver cancer cell lines such as SMMC-7721, HepG2, Huh7, or isolated primary liver cells. In some embodiments, the cell is a HepG2 liver cancer cell.
采用本公开提供的方法抑制PCSK9基因在细胞中表达,所提供的修饰的siRNA、药物组合物和/或siRNA缀合物中的siRNA用量一般是这样的量:其足以减少靶基因的表达,并导致在靶细胞表面处1pM至1μM、或0.01nM至100nM、或0.05nM至50nM或0.05nM至约5nM的细胞外浓度。达到该局部浓度所需的量将随各种因素而变化,所述因素包括递送方法、递送部位、在 递送部位和靶细胞或组织之间的细胞层的数目、递送途径(局部还是全身)等。在递送部位处的浓度可以显著高于在靶细胞或组织的表面处的浓度。Using the method provided in the present disclosure to inhibit PCSK9 gene expression in cells, the amount of siRNA in the provided modified siRNA, pharmaceutical composition and/or siRNA conjugate is generally such an amount that it is sufficient to reduce the expression of the target gene, and This results in an extracellular concentration of 1 pM to 1 μM, or 0.01 nM to 100 nM, or 0.05 nM to 50 nM, or 0.05 nM to about 5 nM at the surface of the target cell. The amount required to achieve this local concentration will vary with various factors, including the delivery method, the delivery site, the number of cell layers between the delivery site and the target cell or tissue, the delivery route (local or systemic), etc. . The concentration at the delivery site can be significantly higher than the concentration at the surface of the target cell or tissue.
试剂盒Reagent test kit
本公开提供了一种试剂盒,所述试剂盒包含有效量的本公开的修饰的siRNA、药物组合物和siRNA缀合物的至少一种。The present disclosure provides a kit comprising an effective amount of at least one of the modified siRNA, pharmaceutical composition and siRNA conjugate of the present disclosure.
在一些实施方式中,本文所述的试剂盒可在一个容器中提供修饰的siRNA。在一些实施方式中,本文所述的试剂盒可包含一个提供药学上可接受的赋形剂的容器。在一些实施方式中,所述试剂盒中还可包含其它成分,如稳定剂或防腐剂等。在一些实施方式中,本文所述的试剂盒可在不同于提供本文所述修饰的siRNA的容器以外的其它容器中包含至少一种其它治疗剂。在一些实施方式中,所述试剂盒可包含用于将修饰的siRNA与药学上可接受的载体和/或辅料或其它成分(若有的话)进行混合的说明书。In some embodiments, the kits described herein can provide modified siRNA in one container. In some embodiments, the kits described herein may include a container that provides pharmaceutically acceptable excipients. In some embodiments, the kit may also contain other ingredients, such as stabilizers or preservatives. In some embodiments, the kits described herein may contain at least one other therapeutic agent in a container other than the container that provides the modified siRNA described herein. In some embodiments, the kit may include instructions for mixing the modified siRNA with pharmaceutically acceptable carriers and/or excipients or other ingredients (if any).
在本公开的试剂盒中,所述修饰的siRNA和药学上可接受的载体和/或辅料以及所述修饰的siRNA、药物组合物和/或siRNA缀合物和/或缀合物,和/或药学上可接受的辅料可以任何形式提供,例如液体形式、干燥形式或冻干形式。在一些实施方式中,所述修饰的siRNA和药学上可接受的载体和/或辅料以及所述药物组合物和/或缀合物和任选的药学上可接受的辅料基本上纯净和/或无菌。在一些实施方式中,可在本公开的试剂盒中提供无菌水。In the kit of the present disclosure, the modified siRNA and a pharmaceutically acceptable carrier and/or adjuvant, and the modified siRNA, pharmaceutical composition and/or siRNA conjugate and/or conjugate, and/ Or pharmaceutically acceptable excipients can be provided in any form, such as liquid form, dried form or lyophilized form. In some embodiments, the modified siRNA and pharmaceutically acceptable carriers and/or adjuvants and the pharmaceutical composition and/or conjugate and optional pharmaceutically acceptable adjuvants are substantially pure and/or Sterile. In some embodiments, sterile water can be provided in the kit of the present disclosure.
下面将通过实施例来进一步说明本公开,但是本公开并不因此而受到任何限制。The following examples will further illustrate the present disclosure, but the present disclosure is not limited in any way.
实施例Example
除非特别说明,以下实施例中所用到的试剂、培养基均为市售商品,所用到的核酸电泳、real-time PCR等操作均参照Molecular Cloning(Cold Spring Harbor Laboratory Press(1989))所记载的方法进行。Unless otherwise specified, the reagents and media used in the following examples are all commercially available products, and the nucleic acid electrophoresis, real-time PCR and other operations used are described in Molecular Cloning (Cold Spring Harbor Laboratory Press (1989)) Method to proceed.
本公开合成的针对PCSK9基因的siRNA、siRNA缀合物或作为阴性对照的siRNA、siRNA缀合物转染细胞时,使用Lipofectamine TM2000(Invitrogen)作为转染试剂,具体操作参照制造商提供的说明书。 When transfecting cells with siRNA, siRNA conjugate or siRNA and siRNA conjugate for PCSK9 gene synthesized in the present disclosure, Lipofectamine TM 2000 (Invitrogen) is used as the transfection reagent, and the specific operation refers to the instructions provided by the manufacturer .
若无其它说明,以下提供的试剂比例均按体积比(v/v)计算。Unless otherwise stated, the reagent ratios provided below are calculated by volume ratio (v/v).
实验数据均以
Figure PCTCN2020091489-appb-000066
(平均值±标准误差)表示,数据分析采用Graphpad prism 6.0统计分析软件。利用One-way ANOVA进行分析,分析方法选用Tukey进行组间比较,判断组间差异是否具有显著性,在One-way ANOVA方法下如果没有显著性差异,当总体P<0.05时,利用T-test进行双尾检测,当p<0.05时,两组之间具有显著性差异。
The experimental data are
Figure PCTCN2020091489-appb-000066
(Mean±standard error) means that the data analysis uses Graphpad prism 6.0 statistical analysis software. Use One-way ANOVA for analysis, and use Tukey as the analysis method to compare between groups to determine whether the differences between groups are significant. If there is no significant difference under the One-way ANOVA method, use T-test when the overall P<0.05 Two-tailed detection was performed, and when p<0.05, there was a significant difference between the two groups.
制备例1缀合物1的制备Preparation Example 1 Preparation of Conjugate 1
本制备例合成了表3中所示的缀合物1,其编号为L10-siPCSKa1M1S。该缀合物中所缀合的siRNA具有表3中对应于缀合物1的正义链和反义链序列。In this preparation example, the conjugate 1 shown in Table 3 was synthesized, and its number was L10-siPCSKa1M1S. The siRNA conjugated in this conjugate has the sense strand and antisense strand sequences corresponding to conjugate 1 in Table 3.
(1-1)L-10化合物的合成(1-1) Synthesis of L-10 compound
按照以下方法,合成了L-10化合物:The L-10 compound was synthesized according to the following method:
Figure PCTCN2020091489-appb-000067
Figure PCTCN2020091489-appb-000067
(1-1-1)缀合末端段GAL-5的合成(1-1-1) Synthesis of conjugated terminal GAL-5
Figure PCTCN2020091489-appb-000068
Figure PCTCN2020091489-appb-000068
(1-1-1a)GAL-2的合成(1-1-1a) Synthesis of GAL-2
将100.0g GAL-1(N-乙酰-D-半乳糖胺盐酸盐,CAS号:1772-03-8,购自宁波弘翔生化公司,463.8mmol)溶于1000ml无水吡啶,冰水浴下加入540ml乙酸酐(购自Enox公司,5565.6mmol),室温搅拌反应1.5小时。将反应液倒入10L冰水中,减压抽滤,滤饼用2L冰水洗涤后,加乙腈/甲苯混合溶剂(体积比乙腈:甲苯=1:1)至完全溶解,蒸干溶剂,得到白色固体产品GAL-2 130.0g。Dissolve 100.0g of GAL-1 (N-acetyl-D-galactosamine hydrochloride, CAS number: 1772-03-8, purchased from Ningbo Hongxiang Biochemical Company, 463.8mmol) in 1000ml of anhydrous pyridine, under ice water bath 540ml of acetic anhydride (purchased from Enox Company, 5565.6mmol) was added, and the reaction was stirred at room temperature for 1.5 hours. The reaction solution was poured into 10L ice water, filtered under reduced pressure, and the filter cake was washed with 2L ice water, and acetonitrile/toluene mixed solvent (volume ratio acetonitrile:toluene=1:1) was added to completely dissolve, the solvent was evaporated to dryness, and white The solid product GAL-2 130.0g.
(1-1-1b)GAL-3的合成(1-1-1b) Synthesis of GAL-3
将步骤(1-1-1a)中获得的GAL-2(35.1g,90.0mmol)溶解于213ml无水1,2-二氯乙烷中,在冰水浴且氮气保护条件下,加入24.0g三氟甲磺酸三甲基硅酯(TMSOTf,CAS号:27607-77-8,购自麦克林公司,108.0mmol),室温反应过夜。Dissolve the GAL-2 (35.1g, 90.0mmol) obtained in step (1-1-1a) in 213ml of anhydrous 1,2-dichloroethane, add 24.0g of trichloroethane in an ice water bath and under nitrogen protection. Trimethylsilyl fluoromethanesulfonate (TMSOTf, CAS number: 27607-77-8, purchased from Macleans, 108.0 mmol), react at room temperature overnight.
在反应液中加入400ml二氯甲烷稀释,以硅藻土过滤,再加入1L饱和碳酸氢钠水溶液,搅拌均匀,分出有机相,水相用二氯乙烷萃取两次,每次300ml,合并有机相,分别用300ml饱和碳酸氢钠水溶液和300ml饱和食盐水洗涤,分出有机相,无水硫酸钠干燥,减压蒸干溶剂,得到浅黄色粘稠糖稀状产品GAL-3 26.9g。Add 400ml of dichloromethane to the reaction solution to dilute, filter with diatomaceous earth, add 1L of saturated sodium bicarbonate aqueous solution, stir evenly, separate the organic phase, and extract the aqueous phase with dichloroethane twice, 300ml each time, and combine The organic phase was washed with 300 ml of saturated sodium bicarbonate aqueous solution and 300 ml of saturated brine respectively, the organic phase was separated, dried with anhydrous sodium sulfate, and the solvent was evaporated under reduced pressure to obtain 26.9 g of light yellow viscous sugar thin product GAL-3.
(1-1-1c)GAL-4的合成(1-1-1c) Synthesis of GAL-4
将步骤(1-1-1b)中获得的GAL-3(26.9g,81.7mmol)溶于136ml无水1,2-二氯乙烷中,加入干燥的
Figure PCTCN2020091489-appb-000069
分子筛粉末30g,再加入9.0g 5-己烯-1-醇(CAS号:821-41-0,购自Adamas-beta公司,89.9mmol),室温下搅拌30分钟,冰浴和氮气保护下加入9.08g TMSOTf(40.9mmol),室温下搅拌反应过夜。过滤除去
Figure PCTCN2020091489-appb-000070
分子筛粉末,滤液中加入300ml二氯甲烷稀释,以硅藻土过滤,再加入500ml饱和碳酸氢钠水溶液搅拌10分钟洗涤,分出有机相,水相用300ml二氯乙烷萃取一次,合并有机相并分别用300ml饱和碳酸氢钠水溶液和300ml饱和食盐水洗涤,分出有机相,无水硫酸钠干燥,减压蒸干溶剂,得到黄色糖稀状产品GAL-4 41.3g,不进行纯化直接进行下一步氧化反应。
The GAL-3 (26.9g, 81.7mmol) obtained in step (1-1-1b) was dissolved in 136ml of anhydrous 1,2-dichloroethane, and the dried
Figure PCTCN2020091489-appb-000069
30g molecular sieve powder, then add 9.0g 5-hexen-1-ol (CAS number: 821-41-0, purchased from Adamas-beta company, 89.9mmol), stir at room temperature for 30 minutes, add under ice bath and nitrogen protection 9.08g TMSOTf (40.9mmol), stirred and reacted overnight at room temperature. Filter to remove
Figure PCTCN2020091489-appb-000070
Molecular sieve powder, the filtrate is diluted with 300ml dichloromethane, filtered with diatomaceous earth, and then 500ml saturated sodium bicarbonate aqueous solution is added and stirred for 10 minutes to wash, separate the organic phase, the aqueous phase is extracted once with 300ml dichloroethane, and the organic phases are combined They were washed with 300ml saturated sodium bicarbonate aqueous solution and 300ml saturated brine respectively, the organic phase was separated, dried with anhydrous sodium sulfate, and the solvent was evaporated under reduced pressure to obtain 41.3g of yellow sugar thin product GAL-4, which was carried out directly without purification. One-step oxidation reaction.
(1-1-1d)GAL-5的合成(1-1-1d) Synthesis of GAL-5
将按照步骤(1-1-1c)中描述的方法得到的GAL-4(14.9g,34.7mmol,)溶于77ml二氯甲烷和77ml乙腈的混合溶剂中,分别加入103ml去离子水和29.7g高碘酸钠(CAS号:7790-28-5,购自阿拉丁公司,138.8mmol),冰水浴下搅拌10分钟,加入三氯化钌(CAS号:14898-67-0,购自安耐吉公司,238mg,1.145mmol),室温反应过夜。反应液加入300ml水稀释搅拌,加饱和碳酸氢钠调pH约为7.5,分出并弃去有机相,水相用二氯甲烷萃取三次,每次200ml,弃去有机相。 水相用柠檬酸固体调节pH约为3,用二氯甲烷萃取三次,每次200ml,合并有机相,无水硫酸钠干燥,减压蒸干溶剂,得到白色泡沫状固体产品GAL-5 6.85g。 1H NMR(400MHz,DMSO)δ12.01(br,1H),7.83(d,J=9.2Hz,1H),5.21(d,J=3.2Hz,1H),4.96(dd,J=11.2,3.2Hz,1H),4.49(d,J=8.4Hz,1H),4.07–3.95(m,3H),3.92–3.85(m,1H),3.74–3.67(m,1H),3.48–3.39(m,1H),2.20(t,J=6.8Hz,2H),2.11(s,3H),2.00(s,3H),1.90(s,3H),1.77(s,3H),1.55–1.45(m,4H). GAL-4 (14.9g, 34.7mmol,) obtained according to the method described in step (1-1-1c) was dissolved in a mixed solvent of 77ml dichloromethane and 77ml acetonitrile, and 103ml deionized water and 29.7g were added respectively Sodium periodate (CAS number: 7790-28-5, purchased from Aladdin Company, 138.8mmol), stirred under ice water bath for 10 minutes, adding ruthenium trichloride (CAS number: 14898-67-0, purchased from An Nai Kyrgyzstan, 238mg, 1.145mmol), react at room temperature overnight. The reaction solution was diluted with 300 ml of water and stirred, and saturated sodium bicarbonate was added to adjust the pH to about 7.5. The organic phase was separated and discarded. The aqueous phase was extracted with dichloromethane three times with 200 ml each time and the organic phase was discarded. Adjust the pH of the aqueous phase to about 3 with citric acid solid, extract three times with 200ml of dichloromethane, combine the organic phases, dry with anhydrous sodium sulfate, and evaporate the solvent under reduced pressure to obtain 6.85g of white foamy solid product GAL-5 . 1 H NMR(400MHz,DMSO)δ12.01(br,1H), 7.83(d,J=9.2Hz,1H), 5.21(d,J=3.2Hz,1H), 4.96(dd,J=11.2,3.2 Hz,1H), 4.49(d,J=8.4Hz,1H), 4.07–3.95(m,3H), 3.92–3.85(m,1H), 3.74–3.67(m,1H), 3.48–3.39(m, 1H), 2.20 (t, J = 6.8Hz, 2H), 2.11 (s, 3H), 2.00 (s, 3H), 1.90 (s, 3H), 1.77 (s, 3H), 1.55-1.45 (m, 4H) ).
(1-1-2)L-8的合成:(1-1-2) Synthesis of L-8:
Figure PCTCN2020091489-appb-000071
Figure PCTCN2020091489-appb-000071
将J-0(9.886g,52.5mmol,商购自阿法埃沙公司)和步骤(1-1-1)中得到的GAL-5(72.819g,162.75mmol,由多批次产物合并而得)溶于525ml二氯甲烷,加入二异丙基乙胺(DIEA,44.782g,346.50mmol)、苯并三唑-1-基-氧基三吡咯烷基鏻六氟磷酸盐/酯(PyBOP,90.158g,173.25mmol)和羟基苯并三唑(HOBt,23.410g,173.25mmol),室温下反应4h,加入20ml饱和碳酸氢钠和200ml饱和食盐水进行洗涤,水相用二氯甲烷萃取2次,每次100ml,合并有机相,用无水硫酸钠干燥,过滤后减压蒸干溶剂得粗品。纯化使用200-300目正相硅胶,以10wt%三乙胺中和硅胶酸性,1wt‰三乙胺平衡柱子,以二氯甲烷:甲醇=100:25-100:40梯度洗脱,收集产物洗脱液,减压蒸干溶剂得到纯品L-8 38.8g。 1H NMR(400MHz,DMSO)δ7.84(d,J=9.0Hz,3H),7.27–7.23(m,1H),7.13–7.18(m,1H),5.22(d,J=3.1Hz,3H),4.97(dd,J=11.3,3.1Hz,3H),4.48(d,J=8.4Hz,3H),4.09–3.98(m,9H),3.88(dd,J=19.3,9.3Hz,3H),3.75–3.66(m,3H),3.44–3.38(m,3H),3.17–3.30(m,4H),3.10–2.97(m,4H),2.35–2.20(m,6H),2.15–2.08(m,9H),2.07–1.98(m,13H),1.94–1.87(m,9H),1.81–1.74(m,9H),1.65–1.42(m,18H).MS m/z:C 85H 119N 7O 30,[M+H] +,理论:1477.59,实测:1477.23。 J-0 (9.886g, 52.5mmol, commercially available from Alfa Esha) and GAL-5 (72.819g, 162.75mmol) obtained in step (1-1-1), obtained by combining multiple batches of products ) Was dissolved in 525ml of dichloromethane, and diisopropylethylamine (DIEA, 44.782g, 346.50mmol), benzotriazol-1-yl-oxytripyrrolidinyl phosphonium hexafluorophosphate (PyBOP, 90.158g, 173.25mmol) and hydroxybenzotriazole (HOBt, 23.410g, 173.25mmol), react at room temperature for 4h, add 20ml saturated sodium bicarbonate and 200ml saturated brine for washing, and extract the aqueous phase twice with dichloromethane , 100ml each time, combine the organic phases, dry with anhydrous sodium sulfate, filter and evaporate the solvent under reduced pressure to obtain a crude product. Purification uses 200-300 mesh normal phase silica gel, neutralizes the acidity of silica gel with 10wt% triethylamine, equilibrates the column with 1wt‰ triethylamine, and eluates with a gradient of dichloromethane:methanol=100:25-100:40, and collects the product wash The liquid was removed, and the solvent was evaporated under reduced pressure to obtain 38.8 g of pure product L-8. 1 H NMR(400MHz,DMSO)δ7.84(d,J=9.0Hz,3H), 7.27–7.23(m,1H), 7.13–7.18(m,1H), 5.22(d,J=3.1Hz,3H ), 4.97 (dd, J = 11.3, 3.1 Hz, 3H), 4.48 (d, J = 8.4 Hz, 3H), 4.09-3.98 (m, 9H), 3.88 (dd, J = 19.3, 9.3 Hz, 3H) ,3.75–3.66(m,3H), 3.44–3.38(m,3H), 3.17–3.30(m,4H), 3.10–2.97(m,4H), 2.35–2.20(m,6H), 2.15–2.08( m,9H),2.07–1.98(m,13H),1.94–1.87(m,9H),1.81–1.74(m,9H),1.65–1.42(m,18H).MS m/z: C 85 H 119 N 7 O 30 , [M+H] + , theory: 1477.59, actual measurement: 1477.23.
(1-1-3a)A-1的合成(1-1-3a) Synthesis of A-1
Figure PCTCN2020091489-appb-000072
Figure PCTCN2020091489-appb-000072
将DMTrCl(4,4'-双甲氧基三苯甲基氯,101.65g,300mmol)溶于1000ml无水吡啶中,加入DL-甘油酸钙水合物(28.63g,100mmol),在45℃反应20h,将反应液过滤,滤饼用200ml DCM淋洗,滤液减压浓缩至干,剩余物用500ml二氯甲烷重新溶解,0.5M三乙胺磷酸盐(pH=7-8)洗涤2次,每次200ml,水相以二氯甲烷萃取2次,每次200ml,合并有机相,用无水硫酸钠干燥,过滤,减压蒸干溶剂,200-300目正相硅胶柱纯化,以石油醚:乙酸乙酯:二氯甲烷:甲醇=1:1:1:0.35-1:1:1:0.55梯度洗脱,收集产物洗脱液,减压蒸干溶剂,600ml二氯甲烷重新溶解,以200ml 0.5M三乙胺磷酸盐洗涤1次,水相用200ml二氯甲烷萃取1次,合并有机相,无水硫酸钠干燥,过滤,减压蒸干溶剂,真空油泵减压下过夜,得到白色固体产品A-1 50.7g。 1H NMR(400MHz,DMSO-d6)δ7.46(ddd,J=6.5,2.3,1.1Hz,1H),7.40–7.28(m,7H),6.89–6.81(m,4H),4.84(d,J=5.0Hz,1H),4.36–4.24(m,1H),4.29(s,6H),3.92(dd,J=12.4,7.0Hz,1H),3.67(dd,J=12.3,7.0Hz,1H),2.52(q,J=6.3Hz,6H),1.03(t,J=6.3Hz,9H).MS m/z:C 24H 23O 6,[M-H] -,理论:407.15,实测:406.92。 Dissolve DMTrCl (4,4'-bismethoxytrityl chloride, 101.65g, 300mmol) in 1000ml of anhydrous pyridine, add DL-calcium glycerate hydrate (28.63g, 100mmol), and react at 45℃ After 20h, the reaction solution was filtered, the filter cake was rinsed with 200ml DCM, the filtrate was concentrated to dryness under reduced pressure, the residue was redissolved with 500ml dichloromethane, and washed with 0.5M triethylamine phosphate (pH=7-8) twice. 200ml each time, the aqueous phase was extracted twice with dichloromethane, 200ml each time, the organic phases were combined, dried with anhydrous sodium sulfate, filtered, and the solvent was evaporated under reduced pressure. Purified by 200-300 mesh normal phase silica gel column and purified with petroleum ether : Ethyl acetate: dichloromethane: methanol=1:1:1:0.35-1:1:1:0.55 gradient elution, collect the product eluent, evaporate the solvent under reduced pressure, and re-dissolve in 600ml dichloromethane to Wash with 200ml 0.5M triethylamine phosphate once, extract the aqueous phase with 200ml dichloromethane once, combine the organic phases, dry with anhydrous sodium sulfate, filter, evaporate the solvent under reduced pressure, vacuum oil pump overnight under reduced pressure to obtain white The solid product A-1 50.7g. 1 H NMR(400MHz,DMSO-d6)δ7.46(ddd,J=6.5,2.3,1.1Hz,1H), 7.40–7.28(m,7H), 6.89–6.81(m,4H), 4.84(d, J = 5.0Hz, 1H), 4.36–4.24 (m, 1H), 4.29 (s, 6H), 3.92 (dd, J = 12.4, 7.0 Hz, 1H), 3.67 (dd, J = 12.3, 7.0 Hz, 1H ),2.52(q,J=6.3Hz,6H),1.03(t,J=6.3Hz,9H).MS m/z: C 24 H 23 O 6 , [MH] - , theory: 407.15, actual measurement: 406.92 .
(1-1-3b)L-7的合成:(1-1-3b) Synthesis of L-7:
Figure PCTCN2020091489-appb-000073
Figure PCTCN2020091489-appb-000073
将步骤(1-1-2)中获得的L-8(40g,27.09mmol,由多批次产物合并而得)和步骤(1-1-3a)中获得的A-1(41.418g,81.27mmol)混合,溶于271ml二氯甲烷,加入3-二乙氧基磷酰基-1,2,3-苯唑4(3H)-酮(DEPBT)(24.318g,81.37mmol),再加入二异丙基乙胺(21.007g,162.54mmol),25℃下搅拌反应1.5h,用800ml饱和碳酸氢钠洗涤有机相,水相以二氯甲烷萃取3次,每次50ml,以150ml饱和食盐水洗涤有机相,水相以50ml二氯甲烷萃取1次,合并有机相并以无水硫酸钠干燥,过滤后减压蒸干溶剂,真空油泵发泡干燥过夜,得到粗品。柱纯化使用2kg 200-300目正相硅胶,以200ml三乙胺中和硅胶酸性,以含1wt%三乙胺的石油醚平衡柱子,以石油醚:乙酸乙酯:二氯甲烷:N,N-二甲基甲酰胺=1:1:1:0.5-1:1:1:0.6梯度洗脱,收集产物洗脱液,减压蒸干溶剂得到纯品L-7 40.4g。 1H NMR(400MHz,DMSO)δ7.90–7.78(m,4H),7.75–7.64(m,1H),7.38–7.18(m,9H),6.91–6.83(m,4H),5.25–5.10(m,4H),4.97(dd,J=11.2,3.2Hz,3H),4.48–4.30(m,4H),4.02(s,9H),3.93–3.84(m,3H),3.76–3.66(m,9H),3.45–3.35(m,3H),3.24–2.98(m,10H),2.30–2.20(m,2H),2.11–1.88(m,31H),1.80–1.40(m,28H).MS m/z:C 90H 128N 7O 35,[M-DMTr] +,理论:1564.65,实测:1564.88。 The L-8 (40g, 27.09mmol, obtained by combining multiple batches) obtained in step (1-1-2) and A-1 (41.418g, 81.27) obtained in step (1-1-3a) mmol), dissolve in 271ml of dichloromethane, add 3-diethoxyphosphoryl-1,2,3-benzoxazole 4(3H)-one (DEPBT) (24.318g, 81.37mmol), then add diiso Propylethylamine (21.007g, 162.54mmol), stirred for 1.5h at 25℃, washed the organic phase with 800ml saturated sodium bicarbonate, and extracted the aqueous phase with dichloromethane 3 times, each time with 50ml, washed with 150ml saturated brine The organic phase and the aqueous phase were extracted once with 50 ml of dichloromethane. The organic phases were combined and dried over anhydrous sodium sulfate. After filtration, the solvent was evaporated under reduced pressure, and the vacuum oil pump was foamed and dried overnight to obtain a crude product. Use 2kg 200-300 mesh normal phase silica gel for column purification, neutralize the silica gel acidity with 200ml triethylamine, equilibrate the column with petroleum ether containing 1wt% triethylamine, and use petroleum ether: ethyl acetate: dichloromethane: N, N -Dimethylformamide=1:1:1:0.5-1:1:1:0.6 gradient elution, collect the product eluent, evaporate the solvent under reduced pressure to obtain 40.4g of pure product L-7. 1 H NMR (400MHz, DMSO) δ 7.90--7.78 (m, 4H), 7.75 - 7.64 (m, 1H), 7.38 - 7.18 (m, 9H), 6.91 - 6.83 (m, 4H), 5.25 - 5.10 ( m, 4H), 4.97 (dd, J = 11.2, 3.2 Hz, 3H), 4.48–4.30 (m, 4H), 4.02 (s, 9H), 3.93–3.84 (m, 3H), 3.76–3.66 (m, 9H), 3.45–3.35(m, 3H), 3.24–2.98(m, 10H), 2.30–2.20(m, 2H), 2.11–1.88(m, 31H), 1.80–1.40(m, 28H).MS m /z: C 90 H 128 N 7 O 35 , [M-DMTr] + , theory: 1564.65, actual measurement: 1564.88.
(1-1-4)L-9的合成:(1-1-4) Synthesis of L-9:
Figure PCTCN2020091489-appb-000074
Figure PCTCN2020091489-appb-000074
将步骤(1-1-3b)中获得的L-7(40g,21.4247mmol)、丁二酸酐(4.288g,42.8494mmol)和4-二甲氨基吡啶(DMAP,5.235g,42.8494mmol)混合溶于215ml二氯甲烷,再加入二异丙基乙胺(DIEA,13.845g,107.1235mmol),25℃下搅拌24h,800ml 0.5M三乙胺磷酸盐洗涤反应液,水相以二氯甲烷萃取3次,每次5ml,合并有机相减压蒸干得到粗品。柱纯化使用1kg 200-300目正相硅胶,以1wt%三乙胺中和硅胶酸性,以二氯甲烷平衡柱子,以含1wt‰三乙胺的二氯甲烷:甲醇=100:18-100:20梯度洗脱,收集产物洗脱液,减压蒸干溶剂得到纯品L-9缀合分子31.0g。 1H NMR(400MHz,DMSO)δ8.58(d,J=4.2Hz,1H),7.94–7.82(m,3H),7.41–7.29(m,5H),7.22(d,J=8.1Hz,5H),6.89(d,J=8.3Hz,4H),5.49–5.37(m,1H),5.21(d,J=3.0Hz,3H),4.97(d,J=11.1Hz,3H),4.49(d,J=8.2Hz,3H),4.02(s,9H),3.88(dd,J=19.4,9.4Hz,3H),3.77–3.65(m,9H),3.50–3.39(m,6H),3.11–2.90(m,5H),2.61–2.54(m,4H),2.47–2.41(m,2H),2.26–2.17(m,2H),2.15–1.95(m,22H),1.92–1.84(m,9H),1.80–1.70(m,10H),1.65–1.35(m,17H),1.31–1.19(m,4H),0.96(t,J=7.1Hz,9H).MS m/z:C 94H 132N 7O 38,[M-DMTr] +,理论:1664.72,实测:1665.03。 The L-7 (40g, 21.4247mmol) obtained in step (1-1-3b), succinic anhydride (4.288g, 42.8494mmol) and 4-dimethylaminopyridine (DMAP, 5.235g, 42.8494mmol) were mixed and dissolved Add diisopropylethylamine (DIEA, 13.845g, 107.1235mmol) to 215ml of dichloromethane, stir for 24h at 25°C, wash the reaction solution with 800ml of 0.5M triethylamine phosphate, and extract the aqueous phase with dichloromethane. 5ml each time, combine the organic phases and evaporate to dryness under reduced pressure to obtain a crude product. For column purification, use 1kg 200-300 mesh normal phase silica gel, neutralize the silica gel acidity with 1wt% triethylamine, equilibrate the column with dichloromethane, and use dichloromethane containing 1wt‰ triethylamine: methanol=100:18-100: 20 gradient elution, collecting the product eluate, evaporating the solvent under reduced pressure to obtain 31.0 g of pure L-9 conjugated molecule. 1 H NMR(400MHz,DMSO)δ8.58(d,J=4.2Hz,1H),7.94-7.82(m,3H),7.41-7.29(m,5H),7.22(d,J=8.1Hz,5H ), 6.89 (d, J = 8.3 Hz, 4H), 5.49-5.37 (m, 1H), 5.21 (d, J = 3.0 Hz, 3H), 4.97 (d, J = 11.1 Hz, 3H), 4.49 (d ,J=8.2Hz,3H),4.02(s,9H),3.88(dd,J=19.4,9.4Hz,3H),3.77–3.65(m,9H),3.50–3.39(m,6H),3.11– 2.90(m,5H), 2.61-2.54(m,4H), 2.47-2.41(m,2H), 2.26-2.17(m,2H), 2.15-1.95(m,22H), 1.92-1.84(m,9H) ),1.80–1.70(m,10H),1.65–1.35(m,17H),1.31–1.19(m,4H),0.96(t,J=7.1Hz,9H).MS m/z: C 94 H 132 N 7 O 38 , [M-DMTr] + , theory: 1664.72, actual measurement: 1665.03.
(1-1-5)L-10化合物的合成:(1-1-5) Synthesis of L-10 compound:
Figure PCTCN2020091489-appb-000075
Figure PCTCN2020091489-appb-000075
此步骤中,通过将L-9缀合分子连接至固相载体,制备了L-10化合物。In this step, the L-10 compound is prepared by attaching the L-9 conjugated molecule to the solid support.
将步骤(1-1-4)中获得的L-9缀合分子(22.751g,11mmol)、O-苯并三氮唑-四甲基脲六氟磷酸盐/酯(HBTU,6.257g,16.5mmol)和二异丙基乙胺(DIEA,2.843g,22mmol)混合,溶于900ml乙腈,室温搅拌5分钟,向反应液中加入氨甲基树脂(88g,100-200目,氨基载量400μmol/g,购自南开和成公司),25℃下进行摇床反应,转速150转/分钟,反应18h后过滤,滤饼以DCM淋洗2次,每次300ml,乙腈淋洗3次,每次300ml,真空油泵干燥18h,随后再按照表2中示出的投料配比加入原料(CapA、CapB、4-二甲氨基吡啶(DMAP)和乙腈)进行盖帽反应。25℃下置于摇床上,转速150转/分钟,反应5h,反应液过滤,滤饼用乙腈淋洗3次,每次300ml,减压蒸发溶剂至干,真空油泵减压下干燥过夜,得到L-10化合物(即,连接固相载体的L-9缀合分子)102g,载量90.8μmol/g。The L-9 conjugate molecule (22.751g, 11mmol) obtained in step (1-1-4), O-benzotriazole-tetramethylurea hexafluorophosphate (HBTU, 6.257g, 16.5 mmol) and diisopropylethylamine (DIEA, 2.842g, 22mmol), dissolve in 900ml acetonitrile, stir at room temperature for 5 minutes, add aminomethyl resin (88g, 100-200 mesh, amino loading 400μmol) to the reaction solution /g, purchased from Nankai Hecheng Company), shaker reaction was carried out at 25°C, rotating speed 150 rpm, and filtered after 18 hours of reaction. The filter cake was rinsed with DCM twice, 300ml each time, and acetonitrile rinsed 3 times, each 300ml each time, vacuum oil pump drying for 18h, and then add the raw materials (CapA, CapB, 4-dimethylaminopyridine (DMAP) and acetonitrile) according to the feeding ratio shown in Table 2 for capping reaction. Placed on a shaker at 25°C, rotating speed 150 rpm, reacting for 5 hours, the reaction solution is filtered, the filter cake is rinsed with acetonitrile 3 times, 300 ml each time, the solvent is evaporated under reduced pressure to dryness, and the vacuum oil pump is dried overnight under reduced pressure to obtain The L-10 compound (ie, the L-9 conjugated molecule connected to the solid support) was 102 g, and the loading was 90.8 μmol/g.
表2盖帽反应投料配比Table 2 Feeding ratio of cap reaction
原料raw material 用量Dosage 规格specification 批号batch number 生产厂家Manufacturer
CapACapA 1980ml1980ml ———— ———— ————
CapBCapB 220ml220ml ———— ———— ————
DMAPDMAP 1.100g1.100g 分析纯Analytically pure I1422139I1422139 AladdinAladdin
乙腈Acetonitrile 220ml220ml 光谱纯Spectral purity O15161001O15161001 上海星可Shanghai Xingke
其中,CapA和CapB为盖帽试剂溶液,CapA为20体积%N-甲基咪唑的吡啶/乙腈混合溶液,吡啶与乙腈的体积比为3:5;CapB为20体积%乙酸酐的乙腈溶液。Wherein, CapA and CapB are capping reagent solutions, CapA is a pyridine/acetonitrile mixed solution of 20% by volume N-methylimidazole, and the volume ratio of pyridine to acetonitrile is 3:5; CapB is a solution of 20% by volume of acetic anhydride in acetonitrile.
(1-2)合成缀合物1的正义链(1-2) Synthesis of the sense chain of conjugate 1
通过固相亚磷酰胺法,利用上述步骤制备的L-10化合物起始循环,按照正义链核苷酸排布顺序自3'-5'方向逐一连接核苷单体,合成表3中的siRNA缀合物1的正义链。每连接一个核苷单体都包括脱保护、偶联、盖帽、氧化或硫化四步反应。其中,两个核苷酸之间采用磷酸酯连接时,连接后一个核苷单体时,包括脱保护、偶联、盖帽、氧化四步反应。两个核苷酸之间采用硫代磷酸酯连接时,连接后一个核苷单体时,包括保护、偶联、盖帽、硫化四步反应。合成条件给定如下:Through the solid-phase phosphoramidite method, the L-10 compound prepared by the above steps was used to initiate the cycle, and the nucleoside monomers were connected one by one from the 3'-5' direction according to the sequence of the sense strand nucleotides, and the siRNA in Table 3 was synthesized Sense strand of Conjugate 1. Each connection of a nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization. Among them, when two nucleotides are connected by phosphate ester, when the next nucleoside monomer is connected, there are four steps of deprotection, coupling, capping, and oxidation. When two nucleotides are connected by phosphorothioate, when the next nucleoside monomer is connected, there are four steps of protection, coupling, capping and vulcanization. The synthesis conditions are given as follows:
核苷单体以0.1M浓度的乙腈溶液提供,每一步的脱保护反应的条件相同,即温度为25℃,反应时间为70秒,脱保护试剂为二氯乙酸的二氯甲烷溶液(3%v/v),二氯乙酸与固相载体上4,4'-二甲氧基三苯甲基保护基的摩尔比为5:1。The nucleoside monomer is provided in 0.1M acetonitrile solution. The conditions of the deprotection reaction in each step are the same, that is, the temperature is 25°C, the reaction time is 70 seconds, and the deprotection reagent is dichloroacetic acid in dichloromethane (3% v/v), the molar ratio of dichloroacetic acid to the 4,4'-dimethoxytrityl protecting group on the solid support is 5:1.
每一步偶联反应条件均相同,包括温度为25℃,固相载体上连接的核酸序列与核苷单体的摩尔比为1:10,固相载体上连接的核酸序列和偶联试剂的摩尔比为1:65,反应时间为600秒,偶联试剂为5-乙硫基-1H-四氮唑(5-(Ethylthio)-1H-tetrazole,ETT)的0.5M乙腈溶液。The conditions of each step of the coupling reaction are the same, including the temperature of 25°C, the molar ratio of the nucleic acid sequence connected to the solid-phase carrier to the nucleoside monomer is 1:10, the molar ratio of the nucleic acid sequence connected to the solid-phase carrier and the coupling reagent The ratio is 1:65, the reaction time is 600 seconds, and the coupling reagent is a 0.5 M acetonitrile solution of 5-(Ethylthio)-1H-tetrazole (ETT).
每一步盖帽条件均相同,包括温度为25℃,反应时间为15秒。盖帽试剂溶液为摩尔比为1:1的CapA和CapB的混合溶液,盖帽试剂与固相载体上连接的核酸序列的摩尔比为乙酸酐:N-甲基咪唑:固相载体上连接的核酸序列=1:1:1。The capping conditions for each step are the same, including a temperature of 25°C and a reaction time of 15 seconds. The capping reagent solution is a mixed solution of CapA and CapB with a molar ratio of 1:1, and the molar ratio of the capping reagent to the nucleic acid sequence connected to the solid phase carrier is acetic anhydride: N-methylimidazole: the nucleic acid sequence connected to the solid phase carrier =1:1:1.
每一步氧化反应条件相同,包括温度为25℃,反应时间为15秒,氧化试剂为浓度为0.05M的碘水。碘与偶联步骤中固相载体上连接的核酸序列的摩尔比为30:1。反应在四氢呋喃:水:吡啶=3:1:1的混合溶剂中进行。The oxidation reaction conditions for each step are the same, including a temperature of 25°C, a reaction time of 15 seconds, and an oxidizing reagent of 0.05M iodine water. The molar ratio of iodine to the nucleic acid sequence connected to the solid phase carrier in the coupling step is 30:1. The reaction was carried out in a mixed solvent of tetrahydrofuran:water:pyridine=3:1:1.
每一步硫化反应的条件相同,包括温度为25℃,反应时间为300秒,硫化试剂为氢化黄原素。 硫化试剂与偶联步骤中固相载体上连接的核酸序列的摩尔比为120:1。反应在乙腈:吡啶=1:1的混合溶剂中进行。The conditions of each step of the vulcanization reaction are the same, including the temperature of 25°C, the reaction time of 300 seconds, and the vulcanizing reagent is hydroxanthin. The molar ratio of the vulcanizing reagent to the nucleic acid sequence connected to the solid support in the coupling step is 120:1. The reaction was carried out in a mixed solvent of acetonitrile:pyridine=1:1.
待最后一个核苷单体连接完成后,依次对固相载体上连接的核酸序列进行切割、脱保护、纯化、脱盐,随后冻干获得正义链,其中,After the connection of the last nucleoside monomer is completed, the nucleic acid sequence connected on the solid phase carrier is cut, deprotected, purified, and desalted in sequence, and then lyophilized to obtain the sense strand, where,
切割和脱保护条件如下:将合成的连接有载体的核苷酸序列加入浓度为25wt%的氨水中,氨水用量为0.5ml/μmol,在55℃反应16h,过滤去除剩余载体,将上清液真空浓缩至干。The cutting and deprotection conditions are as follows: add the synthesized nucleotide sequence linked to the carrier into 25wt% ammonia water, the amount of ammonia water is 0.5ml/μmol, react at 55℃ for 16h, filter to remove the remaining carrier, and remove the supernatant. Concentrate to dryness in vacuo.
纯化与脱盐条件如下:利用制备型离子色谱纯化柱(Source 15Q),通过NaCl的梯度洗脱,实现核酸的纯化。具体而言为:洗脱剂A:20mM磷酸钠(pH 8.1),溶剂为水/乙腈=9:1(体积比);洗脱剂B:1.5M氯化钠,20mM磷酸钠(pH 8.1),溶剂为水/乙腈=9:1(体积比);洗脱梯度:洗脱剂A:洗脱剂B=100:0-50:50梯度洗脱。收集产品洗脱液后合并,采用反相色谱纯化柱进行脱盐,具体条件包括采用葡聚糖凝胶柱进行脱盐,填料为葡聚糖凝胶G25(Sephadex G25),以去离子水洗脱。Purification and desalting conditions are as follows: using a preparative ion chromatography purification column (Source 15Q), through NaCl gradient elution, to achieve nucleic acid purification. Specifically: eluent A: 20mM sodium phosphate (pH 8.1), solvent is water/acetonitrile = 9:1 (volume ratio); eluent B: 1.5M sodium chloride, 20mM sodium phosphate (pH 8.1) , The solvent is water/acetonitrile=9:1 (volume ratio); elution gradient: eluent A: eluent B=100:0-50:50 gradient elution. After collecting the product eluates, they are combined and desalted using a reversed-phase chromatography purification column. The specific conditions include using a Sephadex G25 (Sephadex G25) as the filler and eluting with deionized water.
检测方法如下:使用离子交换色谱(IEX-HPLC)检测上述正义链的纯度,使用液质联用(LC-MS)分析分子量。实测值与理论值相符,表明所合成的是3'末端缀合了L-9缀合分子的正义链SS。The detection method is as follows: ion exchange chromatography (IEX-HPLC) is used to detect the purity of the above-mentioned sense chain, and liquid mass spectrometry (LC-MS) is used to analyze the molecular weight. The measured value is consistent with the theoretical value, indicating that the synthesized 3'end is the sense strand SS conjugated with an L-9 conjugate molecule.
(1-3)合成缀合物1的反义链(1-3) Synthesis of antisense strand of Conjugate 1
通过固相亚磷酰胺法,利用通用固相载体(UnyLinker TM loaded
Figure PCTCN2020091489-appb-000076
Solid Supports,Kinovate Life Sciences公司)起始循环,合成表3中缀合物1的反义链。固相合成方法中的脱保护、偶联、盖帽、氧化或硫化反应条件,切割和脱保护,纯化与脱盐条件与合成正义链相同。随后冻干获得反义链。反义链的纯度采用离子交换色谱(IEX-HPLC)进行检测,分子量采用液质联用(LC-MS)进行分析。其结果,实测值与理论值相符,表明所合成的是具有目标序列的反义链AS。
Through the solid-phase phosphoramidite method, the universal solid-phase carrier (UnyLinker TM loaded
Figure PCTCN2020091489-appb-000076
Solid Supports, Kinovate Life Sciences, Inc.) initiated the cycle to synthesize the antisense strand of Conjugate 1 in Table 3. The deprotection, coupling, capping, oxidation or vulcanization reaction conditions, cleavage and deprotection, purification and desalting conditions in the solid-phase synthesis method are the same as the synthetic sense strand. Then lyophilized to obtain the antisense strand. The purity of the antisense strand was detected by ion exchange chromatography (IEX-HPLC), and the molecular weight was analyzed by liquid mass spectrometry (LC-MS). As a result, the measured value agrees with the theoretical value, indicating that the synthesized antisense strand AS has the target sequence.
(1-4)合成缀合物1(1-4) Synthesis of Conjugate 1
对于缀合物1,将正义链与反义链分别溶于注射用水中,得到40mg/mL的溶液,以等摩尔比混合,50℃加热15min,室温冷却后,得到退火后的产品,冻干,得到冻干粉。使用超纯水(Milli-Q超纯水仪,电阻率18.2MΩ*cm(25℃))将缀合物稀释至浓度为0.2mg/mL后,利用液质联用仪(LC-MS,Liquid Chromatography-Mass Spectrometry,购于Waters公司,型号:LCT Premier)进行分子量检测。实测值与理论值一致,说明所合成的siRNA缀合物1是目标设计的带有L-9缀合分子的双链核酸序列。其结构如式(403)所示,所缀合的siRNA序列如表3中所示的对应于缀合物1(又称L10-siPCSKa1M1S)的序列。For Conjugate 1, the sense strand and antisense strand were separately dissolved in water for injection to obtain a 40 mg/mL solution, mixed in an equimolar ratio, heated at 50°C for 15 min, and cooled at room temperature to obtain the annealed product, which was freeze-dried , Get lyophilized powder. Use ultrapure water (Milli-Q ultrapure water meter, resistivity 18.2MΩ*cm(25℃)) to dilute the conjugate to a concentration of 0.2mg/mL, then use liquid mass spectrometry (LC-MS, Liquid Chromatography-Mass Spectrometry, purchased from Waters, Model: LCT Premier) for molecular weight detection. The measured value is consistent with the theoretical value, indicating that the synthesized siRNA conjugate 1 is a target designed double-stranded nucleic acid sequence with an L-9 conjugate molecule. Its structure is shown in formula (403), and the conjugated siRNA sequence is shown in Table 3 and corresponds to the sequence of conjugate 1 (also known as L10-siPCSKa1M1S).
制备例2缀合物2-7的制备Preparation Example 2 Preparation of Conjugate 2-7
采用与制备例1相同的方法,合成了表3中所示的缀合物2-7,并进行分子量检测,不同的是,合成中所依据的正义链和反义链序列分别为表3所示的对应于缀合物2、缀合物3、缀合物4、缀合物5、缀合物6或缀合物7中所缀合的siRNA的正义链和反义链的序列。从而分别得到缀合物2-7。Using the same method as Preparation Example 1, the conjugates 2-7 shown in Table 3 were synthesized, and molecular weight detection was performed. The difference is that the sense strand and antisense strand sequences used in the synthesis are respectively shown in Table 3. The sequence shown corresponds to the sense strand and antisense strand of the siRNA conjugated in Conjugate 2, Conjugate 3, Conjugate 4, Conjugate 5, Conjugate 6, or Conjugate 7. Thus, conjugates 2-7 were obtained respectively.
表3列出了缀合物编号和siRNA序列组成。Table 3 lists the conjugate number and siRNA sequence composition.
表3 siRNA缀合物Table 3 siRNA conjugates
Figure PCTCN2020091489-appb-000077
Figure PCTCN2020091489-appb-000077
Figure PCTCN2020091489-appb-000078
Figure PCTCN2020091489-appb-000078
制备例3合成siRNA序列Preparation Example 3 Synthesis of siRNA sequence
采用与制备例1相同的方法合成表4中所示的siRNA 1,不同在于:The siRNA 1 shown in Table 4 was synthesized using the same method as Preparation Example 1, except that:
1)对于正义链,利用通用固相载体(UnyLinker TM loaded
Figure PCTCN2020091489-appb-000079
Solid Supports,Kinovate Life Sciences公司)起始循环;
1) For the sense chain, the universal solid phase carrier (UnyLinker TM loaded
Figure PCTCN2020091489-appb-000079
Solid Supports, Kinovate Life Sciences Corporation) initial cycle;
2)对于反义链,siRNA 1的序列与缀合物1中所缀合的siRNA反义链序列相比,siRNA 1的反义链在5'-末端第一个核苷酸处具有5'-磷酸。因此,在按照固相亚磷酰胺法制备反义链的过程中,连接反义链最后一个核苷单体后,再经脱保护、偶联、盖帽、氧化四步反应将CPR-I单体(苏州吉玛,货号Cat#13-2601-XX)连接至反义链5'末端,形成5'-磷酸酯修饰。2) For the antisense strand, the sequence of siRNA 1 is compared with the sequence of the siRNA antisense strand conjugated in Conjugate 1. The antisense strand of siRNA 1 has a 5'at the first nucleotide at the 5'-end -Phosphoric acid. Therefore, in the process of preparing the antisense chain according to the solid-phase phosphoramidite method, after connecting the last nucleoside monomer of the antisense chain, the CPR-I monomer is deprotected, coupled, capped, and oxidized. (Suzhou Gima, Cat#13-2601-XX) is connected to the 5'end of the antisense strand to form a 5'-phosphate modification.
Figure PCTCN2020091489-appb-000080
Figure PCTCN2020091489-appb-000080
该连接中,使用的脱保护、偶联、盖帽、氧化反应条件,切割和脱保护,纯化与脱盐条件与合成正义链相同。In this connection, the deprotection, coupling, capping, oxidation reaction conditions, cleavage and deprotection, purification and desalting conditions used are the same as the synthetic sense strand.
采用与制备siRNA 1相同的方法,制备siRNA 2,不同在于,合成中所依据的siRNA正义链和反义链的核酸序列分别为如表4所示的对应于siRNA 2的正义链和反义链序列,从而得到siRNA 2。Using the same method as preparing siRNA 1 to prepare siRNA 2, the difference is that the nucleic acid sequences of the siRNA sense strand and antisense strand used in the synthesis are the sense strand and antisense strand corresponding to siRNA 2 as shown in Table 4 Sequence to get siRNA2.
采用与制备siRNA 1相同的方法,制备siRNA 3-6,不同在于,合成中所依据的siRNA正义链和反义链的核酸序列分别为如表4所示的对应于siRNA 3、siRNA 4、siRNA 5或siRNA 6的正义链和反义链序列,其中这些siRNA的反义链5'-末端第一个核苷酸处具有5'-硫代磷酸酯修饰。因此,在连接CPR-I单体时,以硫化反应条件代替上述氧化反应条件,可制得具有5'-硫代磷酸酯修饰的反义链。从而分别得到siRNA 3、siRNA 4、siRNA 5或siRNA 6。Using the same method as preparing siRNA 1 to prepare siRNA 3-6, the difference is that the nucleic acid sequences of the siRNA sense strand and antisense strand used in the synthesis are corresponding to siRNA 3, siRNA 4, siRNA as shown in Table 4 5 or siRNA 6 sense strand and antisense strand sequence, wherein the first nucleotide of the 5'-end of the antisense strand of these siRNAs has a 5'-phosphorothioate modification. Therefore, when the CPR-I monomer is connected, the vulcanization reaction conditions are used instead of the above oxidation reaction conditions to prepare an antisense chain with 5'-phosphorothioate modification. Thus, siRNA 3, siRNA 4, siRNA 5 or siRNA 6 are obtained respectively.
表4列出了siRNA编号和siRNA序列组成。Table 4 lists the siRNA number and siRNA sequence composition.
表4 siRNA序列Table 4 siRNA sequence
Figure PCTCN2020091489-appb-000081
Figure PCTCN2020091489-appb-000081
Figure PCTCN2020091489-appb-000082
Figure PCTCN2020091489-appb-000082
实验例1 siRNA在体外psiCHECK系统中的抑制活性及脱靶效应检测Experimental example 1 Inhibition activity and off-target effect detection of siRNA in psiCHECK system in vitro
本实验例通过在体外psiCHECK系统中检测siRNA 1-6各个反义链对其在靶质粒的表达抑制,各个siRNA正义链、反义链种子区或正义链种子区对其脱靶质粒的表达抑制,评价本公开的siRNA的在靶活性及脱靶效应。In this experimental example, the expression of each antisense strand of siRNA 1-6 in the in vitro psiCHECK system was detected to inhibit its expression in the target plasmid, and the expression of each siRNA sense strand, antisense strand seed region or sense strand seed region of its off-target plasmid was inhibited. To evaluate the on-target activity and off-target effect of the siRNA of the present disclosure.
根据Kumico Ui-Tei et.al.,Functional dissection of siRNA sequence by systematic DNA substitution:modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect.Nucleic Acids Research,2008.36(7),2136-2151描述的方法,构建检测质粒,将所述检测质粒与待测siRNA共转染至HEK293A细胞中,通过双萤光素酶报告基因的表达水平,来反映siRNA的在靶活性及脱靶效应。具体步骤如下:According to Kumico Ui-Tei et.al., Functional dissection of siRNA sequence by systematic DNA Substitution: modified siRNA with a DNA seeded arm is a powerful tool for mammalian gene silence with significantly reduced off-target, effect. ), the method described in 2136-2151, construct a detection plasmid, co-transfect the detection plasmid and the siRNA to be tested into HEK293A cells, and reflect the on-target activity of the siRNA through the expression level of the dual luciferase reporter gene Off-target effect. Specific steps are as follows:
[1]构建检测质粒[1] Construction of detection plasmid
采用psiCHECK TM-2(Promega TM)质粒构建了4类检测质粒,其中GSCM表示在靶质粒,PSCM、GSSM、PSSM表示脱靶质粒: Four types of detection plasmids were constructed using psiCHECK TM -2 (Promega TM ) plasmids, where GSCM means the target plasmid, PSCM, GSSM, PSSM means off-target plasmid:
(1)GSCM,用于检测siRNA反义链的在靶活性,GSCM含有一段目标序列,该目标序列含有与待测siRNA反义链序列完全互补的区域,其中,siRNA 1、2、4、5和6对应的GSCM中的目标序列如SEQ ID NO:373所示:(1) GSCM is used to detect the on-target activity of the siRNA antisense strand. GSCM contains a target sequence that contains a region that is completely complementary to the sequence of the siRNA antisense strand to be tested. Among them, siRNA 1, 2, 4, 5 The target sequence in GSCM corresponding to 6 is shown in SEQ ID NO: 373:
Figure PCTCN2020091489-appb-000083
Figure PCTCN2020091489-appb-000083
siRNA 3对应的GSCM中的目标序列如SEQ ID NO:374所示:The target sequence in GSCM corresponding to siRNA 3 is shown in SEQ ID NO: 374:
Figure PCTCN2020091489-appb-000084
Figure PCTCN2020091489-appb-000084
(2)PSCM,用于检测正义链的脱靶效应,含有与待测siRNA反义链序列完全一致的目标序列,各siRNA对应的PSCM中的目标序列如表5a所示:(2) PSCM, used to detect the off-target effect of the sense strand, contains a target sequence that is exactly the same as the sequence of the antisense strand of the siRNA to be tested. The target sequence in the PSCM corresponding to each siRNA is shown in Table 5a:
表5a siRNA对应的PSCM中的目标序列Table 5a Target sequence in PSCM corresponding to siRNA
siRNAsiRNA PSCM目标序列(序列方向5'-3')PSCM target sequence (sequence direction 5'-3') SEQ ID NOSEQ ID NO
siRNA 1siRNA 1 GATAAATGTCTGCTTGCTTGGGATAAATGTCTGCTTGCTTGG 375375
siRNA 2 siRNA 2 TTAATAAAAATGCTACAAAACTTAATAAAAATGCTACAAAAC 376376
siRNA 3siRNA 3 TTCCGAATAAACTCCAGGCCTTTCCGAATAAACTCCAGGCCT 377377
siRNA 4 siRNA 4 AGTTACAAAAGCAAAACAGGTAGTTACAAAAGCAAAACAGGT 378378
siRNA 5siRNA 5 ATAAAAATGCTACAAAACCCAATAAAAATGCTACAAAACCCA 379379
siRNA 6siRNA 6 TTTTATTTTAAAAAGTCACCATTTTATTTTAAAAAGTCACCA 380380
(3)GSSM,用于检测反义链种子区的脱靶效应,各siRNA对应的GSSM中的目标序列如表5b所示:(3) GSSM is used to detect the off-target effect of the seed region of the antisense strand. The target sequence in GSSM corresponding to each siRNA is shown in Table 5b:
表5b siRNA对应的GSSM中的目标序列Table 5b Target sequence in GSSM corresponding to siRNA
siRNAsiRNA GSSM目标序列(序列方向5'-3')GSSM target sequence (sequence direction 5'-3') SEQ ID NOSEQ ID NO
siRNA 1siRNA 1 AACCTACCTACTCCATTTATCAACCTACCTACTCCATTTATC 381381
siRNA 2 siRNA 2 TGGGGTGCTACGGTTTATTAATGGGGTGCTACGGTTTATTAA 382382
siRNA 3siRNA 3 CTTAAGTTCTGGGATTCGGAACTTAAGTTCTGGGATTCGGAA 383383
siRNA 4 siRNA 4 CAAGTGGGGTAGGTTGTAACTCAAGTGGGGTAGGTTGTAACT 384384
siRNA 5siRNA 5 GTTTGGGGTGCTAATTTTTATGTTTGGGGTGCTAATTTTTAT 385385
siRNA 6siRNA 6 GTTGTCAGGGGGCAAATAAAAGTTGTCAGGGGGCAAATAAAA 386386
(4)PSSM,用于检测正义链种子区的脱靶效应,各siRNA对应的PSSM中的目标序列如表5c所示:(4) PSSM is used to detect the off-target effect of the seed region of the sense strand. The target sequence in PSSM corresponding to each siRNA is shown in Table 5c:
表5c siRNA对应的PSSM中的目标序列Table 5c Target sequence in PSSM corresponding to siRNA
siRNAsiRNA PSSM目标序列(序列方向5'-3')PSSM target sequence (sequence direction 5'-3') SEQ ID NOSEQ ID NO
siRNA 1siRNA 1 TCGCCCGTGAGGCTTGCTTTTTCGCCCGTGAGGCTTGCTTTT 387387
siRNA 2 siRNA 2 GGCCGCCCCCGGCTACAAACAGGCCGCCCCCGGCTACAAACA 388388
siRNA 3siRNA 3 GGAATCCGCCCCTCCAGGCAGGGAATCCGCCCCTCCAGGCAG 389389
siRNA 4 siRNA 4 CTGGCACCCCTCAAAACAGTGCTGGCACCCCTCAAAACAGTG 390390
siRNA 5siRNA 5 CGCCCCCGTAGACAAAACCACCGCCCCCGTAGACAAAACCAC 391391
siRNA 6siRNA 6 GGGGCGGGGCCAAAGTCACACGGGGCGGGGCCAAAGTCACAC 392392
将上述目标序列单一拷贝分别克隆到psiCHECK TM-2质粒的Xho I/Not I位点。 A single copy of the above target sequence was cloned into the Xho I/Not I site of the psiCHECK TM -2 plasmid.
[2]细胞培养及转染[2] Cell culture and transfection
(1)共转染GSCM和siRNA 1。(1) Co-transfection of GSCM and siRNA1.
用含有10%的胎牛血清(FBS,HyClone公司)及0.2体积%的青链霉素双抗(Penicillin-Streptomycin,HyClone公司)的H-DMEM完全培养基(HyClone公司),于37℃在含5%CO 2/95%空气的培养箱中培养HEK293A细胞(购自南京科佰生物科技有限公司)。 Use H-DMEM complete medium (HyClone) containing 10% fetal bovine serum (FBS, HyClone) and 0.2% by volume of penicillin double antibody (Penicillin-Streptomycin, HyClone) at 37° C. Culture HEK293A cells (purchased from Nanjing Kebai Biotechnology Co., Ltd.) in an incubator with 5% CO 2 /95% air.
将HEK293A细胞以8×10 3细胞/孔接种于96孔板中,16h后细胞生长密度达到70-80%时,吸尽培养孔中H-DMEM完全培养基,每孔加入80μl Opti-MEM培养基(GIBCO公司)继续培养1.5h。 Inoculate HEK293A cells in a 96-well plate at 8×10 3 cells/well. When the cell growth density reaches 70-80% after 16 hours, exhaust the H-DMEM complete medium in the culture wells and add 80μl Opti-MEM to each well. Ji (GIBCO company) continues to cultivate for 1.5h.
用DEPC化水将GSCM检测质粒稀释成200ng/μl的检测质粒工作液;用DEPC化水将siRNA1分别配置成1000nM、333nM、111nM、37.0nM、12.3nM、4.12nM、1.37nM、0.46nM、0.15nM、0.05nM和0.017nM共11个不同浓度的siRNA工作液。Dilute the GSCM detection plasmid with DEPC water to 200ng/μl of detection plasmid working solution; use DEPC water to configure siRNA1 to 1000nM, 333nM, 111nM, 37.0nM, 12.3nM, 4.12nM, 1.37nM, 0.46nM, 0.15 There are 11 siRNA working solutions of different concentrations in nM, 0.05nM and 0.017nM.
分别配置A1-A11溶液,每份A1-A11溶液依次含有上述11个浓度的siRNA工作液1μl、检测质粒工作液0.05μl(含检测质粒10ng)和10μl Opti-MEM培养基。Prepare A1-A11 solutions respectively, each A1-A11 solution contains 1μl of the above 11 concentrations of siRNA working solution, 0.05μl of detection plasmid working solution (containing 10ng of detection plasmid) and 10μl of Opti-MEM medium.
配制B溶液,每份B溶液含有0.2μl Lipofectamine TM 2000和10μl Opti-MEM培养基。 Prepare B solution, each B solution contains 0.2μl Lipofectamine TM 2000 and 10μl Opti-MEM medium.
配制C溶液,每份C溶液含有检测质粒工作液0.05μl(含检测质粒10ng)和10μl Opti-MEM培养基。Prepare C solution, each C solution contains 0.05μl of detection plasmid working solution (containing 10ng of detection plasmid) and 10μl Opti-MEM medium.
分别将一份B溶液依次与一份A1-A11溶液和一份C溶液混合,室温下孵育20min,得到12个转染复合物X1-X12。每个转染复合物配置3份。Mix one part B solution with one part A1-A11 solution and one part C respectively, and incubate at room temperature for 20 minutes to obtain 12 transfection complexes X1-X12. Three copies of each transfection complex are prepared.
在培养孔中,分别加入转染复合物X1-X11,均匀混合,加入量为20μl/孔,相同siRNA浓度的3份转染复合物分别加入三个不同的培养孔中,得到siRNA终浓度分别为10nM、3.33nM、1.11nM、0.37nM、0.123nM、0.0412nM、0.0137nM、0.0046nM、0.0015nM、0.0005nM和0.00017nM的共转染混合物,记为测试组1-11。In the culture wells, add transfection complex X1-X11, mix evenly, add 20μl/well, and add 3 transfection complexes with the same siRNA concentration to three different culture wells to obtain the final siRNA concentration. Co-transfection mixtures of 10nM, 3.33nM, 1.11nM, 0.37nM, 0.123nM, 0.0412nM, 0.0137nM, 0.0046nM, 0.0015nM, 0.0005nM and 0.00017nM were recorded as test groups 1-11.
在另外三个培养孔中,分别加入转染复合物X12,得到不含siRNA的转染混合物,加入量为20μl/孔,记为对照组。In the other three culture wells, the transfection complex X12 was added to obtain a transfection mixture without siRNA. The added amount was 20 μl/well, which was recorded as the control group.
将含siRNA的共转染混合物和不含siRNA的转染混合物在培养孔中转染4h后,每孔补加100μl含20%FBS的H-DMEM完全培养基。将96孔板置于CO 2培养箱继续培养24h。 The co-transfection mixture containing siRNA and the transfection mixture without siRNA were transfected in the culture wells for 4 hours, and each well was supplemented with 100 μl H-DMEM complete medium containing 20% FBS. Place the 96-well plate in a CO 2 incubator and continue culturing for 24 hours.
(2)共转染其它siRNA和质粒.(2) Co-transfection of other siRNA and plasmids.
采用与共转染GSCM和siRNA 1相同的方法共转染GSCM和siRNA 2-6,不同的是依次用siRNA 2-6代替siRNA1。GSCM and siRNA 2-6 were co-transfected using the same method as the co-transfection of GSCM and siRNA 1, except that siRNA 2-6 was used in turn instead of siRNA1.
采用与共转染GSCM和siRNA 1-6相同的方法共转染PSCM和siRNA 1-6,不同的是用PSCM代替GSCM。PSCM and siRNA 1-6 were co-transfected in the same way as GSCM and siRNA 1-6, except that PSCM was used instead of GSCM.
采用与共转染GSCM和siRNA 1-6相同的方法共转染GSSM和siRNA 1-6,不同的是用GSSM代替GSCM。GSSM and siRNA 1-6 were co-transfected using the same method as GSCM and siRNA 1-6, except that GSSM was used instead of GSCM.
采用与共转染GSCM和siRNA 1-6相同的方法共转染PSSM和siRNA 1-6,不同的是用PSSM代替GSCM。PSSM and siRNA 1-6 were co-transfected using the same method as GSCM and siRNA 1-6, except that PSSM was used instead of GSCM.
[3]检测[3] Detection
吸去培养孔中的培养基,每孔加入150μl的
Figure PCTCN2020091489-appb-000085
Luciferase试剂与H-DMEM混合溶液(体积比1:1),充分混匀,室温孵育10min后,转移120μl混合液到96孔酶标板上,使用Synergy II多功能酶标仪(BioTek公司)读取酶标板各孔中Firefly化学发光值(Fir);再向酶标板各孔加入60μl
Figure PCTCN2020091489-appb-000086
Stop&
Figure PCTCN2020091489-appb-000087
试剂,充分混匀,室温孵育10min后,按照读取Fir的排布方式,使用酶标仪读取酶标板各孔中Renilla的化学发光值(Ren)。
Aspirate the medium in the culture wells and add 150μl of
Figure PCTCN2020091489-appb-000085
Luciferase reagent and H-DMEM mixed solution (volume ratio 1:1), mix well, incubate at room temperature for 10 minutes, transfer 120μl of the mixed solution to a 96-well microplate, use Synergy II multi-function microplate reader (BioTek) to read Take the Firefly chemiluminescence value (Fir) from each well of the microtiter plate; then add 60μl to each well of the microtiter plate
Figure PCTCN2020091489-appb-000086
Stop&
Figure PCTCN2020091489-appb-000087
Mix the reagents thoroughly and incubate at room temperature for 10 minutes. Use a microplate reader to read the Renilla chemiluminescence value (Ren) in each well of the microplate according to the arrangement of reading Fir.
计算酶标板各孔发光比值Ratio=Ren/Fir,各测试组或对照组的发光比值Ratio(测试)或Ratio(对照)为三个培养孔Ratio的平均值;以对照组的发光比值为基准,对各测试组的发光比值进行归一化,获得Ratio(测试)/Rati(对照)的比值R,以此表示Renilla报告基因的表达水平,即相对残留活性。siRNA的抑制率为(1-R)×100%。Calculate the luminescence ratio of each well of the ELISA plate Ratio=Ren/Fir, the luminescence ratio Ratio (test) or Ratio (control) of each test group or control group is the average of the ratio of the three culture wells; take the luminescence ratio of the control group as the benchmark , Normalize the luminescence ratio of each test group to obtain the ratio R of Ratio (test)/Rati (control), which represents the expression level of the Renilla reporter gene, that is, the relative residual activity. The inhibition rate of siRNA was (1-R)×100%.
依据转染了不同的siRNA(siRNA 1、siRNA 2、siRNA 3、siRNA 4、siRNA 5或siRNA 6)后,psiCHECK系统中报告基因Renilla的相对残留活性,利用Graphpad 5.0软件的非线性回归分析功能拟合log(inhibitor)vs.response—Variable slope(four parameters)剂量-效应曲线,图1A-1F依次为siRNA 1-6的剂量-效应曲线。其中以siRNA浓度的对数值(lg nM)为横坐标,以Renilla的相对残留活性(%)为纵坐标,每个圆点代表相对于对照组而言,测试组3个培养孔中Renilla的相对残留活性的平均值。According to the relative residual activity of the reporter gene Renilla in the psiCHECK system after transfection of different siRNAs (siRNA 1, siRNA 2, siRNA 3, siRNA 4, siRNA 5 or siRNA 6), use the nonlinear regression analysis function of Graphpad 5.0 software to simulate Combining log (inhibitor) vs. response—Variable slope (four parameters) dose-response curves, Figures 1A-1F show the dose-response curves of siRNA 1-6 in turn. The logarithmic value (lg nM) of the siRNA concentration is taken as the abscissa, and the relative residual activity (%) of Renilla is taken as the ordinate. Each dot represents the relative value of Renilla in the 3 culture wells of the test group relative to the control group. Average value of residual activity.
根据拟合的剂量-效应曲线对应的函数,计算待测siRNA靶向GSCM的IC 50值,所述函数如下, According to the function corresponding to the fitted dose-effect curve, calculate the IC 50 value of the tested siRNA targeting GSCM. The function is as follows:
Figure PCTCN2020091489-appb-000088
Figure PCTCN2020091489-appb-000088
式中:Where:
Y是比值R,即Renilla的相对残留活性,Y is the ratio R, the relative residual activity of Renilla,
X为转染siRNA浓度的对数值,X is the logarithm of the transfection siRNA concentration,
Bot是稳态期底部的Y值,Bot is the Y value at the bottom of the steady-state period,
Top是稳态期顶部的Y值,Top is the Y value at the top of the steady-state period,
X'是当Y在底部到顶部之间一半时对应的X值,而HillSlope则是曲线在X'处的斜率。X'is the corresponding X value when Y is halfway from the bottom to the top, and HillSlope is the slope of the curve at X'.
由该剂量-效应曲线和对应的函数,确定当Y=50%时对应的X 50值,计算获得各siRNA的IC 50值=10^X 50(nM),IC 50值及R 2值总结于表6中。 From the dose-effect curve and the corresponding function, determine the corresponding X 50 value when Y = 50%, calculate the IC 50 value of each siRNA = 10^X 50 (nM), the IC 50 value and R 2 value are summarized in Table 6.
表6 siRNA对GSCM的IC 50及R 2Table 6 IC 50 and R 2 values of siRNA to GSCM
Figure PCTCN2020091489-appb-000089
Figure PCTCN2020091489-appb-000089
Figure PCTCN2020091489-appb-000090
Figure PCTCN2020091489-appb-000090
从表6及图1A-1F可以看出,本公开提供的siRNA在体外HEK293A细胞中有较高的抑制活性,IC 50在0.0194-0.0561nM之间。 It can be seen from Table 6 and Figures 1A-1F that the siRNA provided by the present disclosure has a higher inhibitory activity in HEK293A cells in vitro, with an IC 50 between 0.0194-0.0561 nM.
采用上述相同的方法,依次获得siRNA 1-6对其各自对应的PSCM、GSSM和PSSM的剂量-效应曲线,不同的是,分别用PSCM、GSSM和PSSM代替GSCM。结果表明,每一个siRNA在各个浓度下,对其对应的脱靶质粒PSCM、GSSM和PSSM均没有抑制作用。Using the same method described above, the dose-response curves of siRNA 1-6 to their respective PSCM, GSSM, and PSSM were obtained sequentially, except that PSCM, GSSM, and PSSM were used instead of GSCM. The results show that each siRNA has no inhibitory effect on its corresponding off-target plasmids PSCM, GSSM and PSSM at various concentrations.
上述结果表明本公开的siRNA具有良好的靶向特异性,正义链、反义链种子区及正义链种子区均没有明显的脱靶效应。The above results indicate that the siRNA of the present disclosure has good targeting specificity, and there is no obvious off-target effect in the sense strand, antisense strand seed region, and sense strand seed region.
实验例2 siRNA缀合物在非人灵长类(NHP)中的药效评价Experimental Example 2 Evaluation of the efficacy of siRNA conjugates in non-human primates (NHP)
将3-4岁的普通级食蟹猴(体重2.4-3.1kg)按照体重分为2组,每组4只,雌雄各半,分别向各组食蟹猴单次皮下注射缀合物4或5。Divide 3-4 years old general-grade cynomolgus monkeys (weight 2.4-3.1kg) into 2 groups according to their body weight. Each group consists of 4 cynomolgus monkeys with half male and female. Each group of cynomolgus monkeys were injected subcutaneously with conjugate 4 or 5.
将4-5岁的普通级食蟹猴(体重4.0-5.5kg)按照体重分为3组,每组3只,皆为雄性,分别向各组食蟹猴单次皮下注射缀合物1、2或7。Divide 4-5 years old general-grade cynomolgus monkeys (weight 4.0-5.5kg) into 3 groups according to their body weights, each group has 3, all males, and each group of cynomolgus monkeys were injected subcutaneously with conjugate 1, respectively. 2 or 7.
各缀合物分别用无菌氯化钠注射液配置成9mg/ml(以siRNA计,下同)的溶液,每只动物给药体积1ml/kg,给药剂量为9mg/kg。给药前n天定义为D-n,给药当日定义为D1,给药后第n日定义为Dn。Each conjugate was prepared into a solution of 9 mg/ml (based on siRNA, the same below) with sterile sodium chloride injection, the administration volume of each animal was 1 ml/kg, and the administration dose was 9 mg/kg. The n days before administration is defined as D-n, the day of administration is defined as D1, and the nth day after administration is defined as Dn.
(2-1)肝组织中PCSK9 mRNA检测(2-1) PCSK9 mRNA detection in liver tissue
在D-7和D15分别对各组施予了缀合物1、缀合物2、缀合物4、缀合物5或缀合物7的食蟹猴实施肝脏穿刺术,每次采集肝脏组织约2×2×8mm 3,保存于含1ml RNAlater保存液(Sigma Aldrich公司)的1.5mL无菌EP管中,在4℃冰箱放置24h后,转移到-80℃保存。 Liver puncture was performed on the cynomolgus monkeys administered with Conjugate 1, Conjugate 2, Conjugate 4, Conjugate 5, or Conjugate 7 on D-7 and D15, and the liver was collected each time The tissue is about 2×2×8mm 3 , stored in a 1.5mL sterile EP tube containing 1ml RNAlater preservation solution (Sigma Aldrich), placed in a refrigerator at 4°C for 24h, and then transferred to -80°C for storage.
随后用组织匀浆仪匀浆肝组织,再用Trizol(Thermo Fisher公司)根据说明书总RNA提取的操作步骤提取得到肝组织总RNA。Subsequently, the liver tissue was homogenized with a tissue homogenizer, and then Trizol (Thermo Fisher) was used to extract the total RNA from the liver tissue according to the operation steps of total RNA extraction in the manual.
对于每个动物肝组织提取的总RNA,分别取1μg总RNA作为反转录的模板,使用反转录试剂盒Goldenstar TM RT6 cDNA Synthesis Kit(购自北京擎科新业生物技术有限公司,货号TSK301M)提供的试剂,其中选取Goldenstar TM Oligo(dT) 17作为引物,按试剂盒说明书中反转录操作步骤配置反转录反应体系20μl,对上述各个肝脏的总RNA进行反转录。反转录的条件为:将各反转录反应体系置于50℃孵育50min,然后85℃孵育5min,最后4℃孵育30s,反应结束后,向各反转录反应体系加入DEPC水80μl,得到含cDNA的溶液。 For the total RNA extracted from the liver tissue of each animal, 1 μg total RNA was used as the template for reverse transcription, and the reverse transcription kit Goldenstar TM RT6 cDNA Synthesis Kit (purchased from Beijing Kinco Xinye Biotechnology Co., Ltd., catalog number TSK301M) The reagent provided by ), among which Goldenstar TM Oligo (dT) 17 is selected as the primer, and 20 μl of the reverse transcription reaction system is configured according to the reverse transcription operation steps in the kit manual, and the total RNA of each liver is reversely transcribed. The conditions for reverse transcription are: incubate each reverse transcription reaction system at 50°C for 50 minutes, then incubate at 85°C for 5 minutes, and finally incubate at 4°C for 30 seconds. After the reaction is over, add 80μl of DEPC water to each reverse transcription reaction system to obtain Solution containing cDNA.
对于每一反转录反应体系,分别取上述含cDNA的溶液5μl作为qPCR的模板,使用
Figure PCTCN2020091489-appb-000091
SYBR qPCR SuperMix Plus试剂盒(购自近岸蛋白质科技有限公司,货号E096-01B)提供的试剂配置qPCR反应体系20μl,其中,用于扩增目标基因PCSK9和内参基因GAPDH的PCR引物序列如表7所示,每条引物的终浓度为0.25μM。将各qPCR反应体系置于ABI StepOnePlus Real-Time PCR仪上,使用三步法进行扩增,扩增程序为95℃预变性10min,然后95℃变性30s,60℃退火30s,72℃延伸30s,重复上述变性、退火、延伸的过程共40次后,得到含有扩增了目标基因PCSK9和内参基因GAPDH的产物W。产物W随即依次经过95℃15s,60℃1min,95℃15s的孵育,实时荧光定量PCR仪分别收集产物W中目标基因PCSK9和内参基因GAPDH的溶解曲线,得到目标基因PCSK9和内参基因GAPDH的Ct值。
For each reverse transcription reaction system, take 5μl of the above-mentioned cDNA-containing solution as the qPCR template, and use
Figure PCTCN2020091489-appb-000091
SYBR qPCR SuperMix Plus kit (purchased from Nearshore Protein Technology Co., Ltd., catalog number E096-01B) provides reagents with 20μl qPCR reaction system, among which, the PCR primer sequences used to amplify the target gene PCSK9 and the internal reference gene GAPDH are shown in Table 7 As shown, the final concentration of each primer is 0.25 μM. Place each qPCR reaction system on the ABI StepOnePlus Real-Time PCR machine, and use the three-step method for amplification. The amplification program is 95°C pre-denaturation for 10 minutes, then 95°C denaturation for 30s, 60°C annealing for 30s, and 72°C extension for 30s. After repeating the above-mentioned denaturation, annealing, and extension process 40 times, a product W containing the amplified target gene PCSK9 and the internal reference gene GAPDH was obtained. The product W was incubated at 95°C for 15s, 60°C for 1 min, and 95°C for 15s. The real-time fluorescent quantitative PCR instrument collected the melting curves of the target gene PCSK9 and the internal reference gene GAPDH in the product W to obtain the Ct value.
表7引物序列Table 7 Primer sequence
Figure PCTCN2020091489-appb-000092
Figure PCTCN2020091489-appb-000092
Figure PCTCN2020091489-appb-000093
Figure PCTCN2020091489-appb-000093
采用比较Ct(ΔΔCt)法,对D15和D-7目标基因PCSK9的表达量进行相对定量计算,计算方法如下:Using the comparative Ct (ΔΔCt) method, the relative quantitative calculation of the expression of the D15 and D-7 target genes PCSK9 was performed. The calculation method is as follows:
ΔCt(D15)=Ct(D15目标基因)–Ct(D15内参基因)ΔCt (D15) = Ct (D15 target gene)-Ct (D15 internal reference gene)
ΔCt(D-7)=Ct(D-7目标基因)–Ct(D-7内参基因)ΔCt (D-7) = Ct (D-7 target gene)-Ct (D-7 internal reference gene)
ΔΔCt(D15)=ΔCt(D15)-ΔCt(D-7平均)ΔΔCt(D15)=ΔCt(D15)-ΔCt(D-7 average)
ΔΔCt(D-7)=ΔCt(D-7)-ΔCt(D-7平均)ΔΔCt(D-7)=ΔCt(D-7)-ΔCt(D-7 average)
其中,ΔCt(D-7平均)是给药前各个动物的ΔCt(D-7)的算术平均值。从而,每个动物均对应一个ΔΔCt(D15)和ΔΔCt(D-7)。Wherein, ΔCt (D-7 average) is the arithmetic mean of ΔCt (D-7) of each animal before administration. Thus, each animal corresponds to a ΔΔCt (D15) and ΔΔCt (D-7).
以一个动物的D-7为基准,对该动物D15 PCSK9 mRNA的表达水平进行归一化,定义D-7PCSK9 mRNA表达水平为100%,Using the D-7 of an animal as a benchmark, normalize the expression level of D15 PCSK9 mRNA of this animal, and define the expression level of D-7PCSK9 mRNA as 100%.
PCSK9 mRNA相对表达水平=2^(-ΔΔCt(D15))×100%,The relative expression level of PCSK9 mRNA = 2^(-ΔΔCt(D15))×100%,
缀合物对PCSK9 mRNA的抑制率=(1-2^(-ΔΔCt(D15)))×100%,Inhibition rate of conjugate on PCSK9 mRNA=(1-2^(-ΔΔCt(D15)))×100%,
对于施予相同缀合物的组,缀合物对PCSK9 mRNA的抑制率为本组中各动物对应的抑制率的算术平均值。For the group administered with the same conjugate, the inhibition rate of the conjugate to PCSK9 mRNA was the arithmetic mean of the inhibition rate corresponding to each animal in this group.
各缀合物对肝脏PCSK9 mRNA的抑制率如表8所示。Table 8 shows the inhibition rate of each conjugate on liver PCSK9 mRNA.
表8缀合物对PCSK9 mRNA的抑制率Table 8 Inhibition rate of conjugates on PCSK9 mRNA
缀合物Conjugate 编号Numbering 抑制率%Inhibition rate%
缀合物1Conjugate 1 L10-siPCSKa1M1SL10-siPCSKa1M1S 79±479±4
缀合物2 Conjugate 2 L10-siPCSKb1M1SL10-siPCSKb1M1S 68±1168±11
缀合物4 Conjugate 4 L10-siPCSKd1M1SL10-siPCSKd1M1S 81±681±6
缀合物5Conjugate 5 L10-siPCSKe1M1SL10-siPCSKe1M1S 65±1865±18
缀合物7Conjugate 7 L10-siPCSKg4M5SL10-siPCSKg4M5S 56±2256±22
由表8可以看出,单次给药9mg/kg,相对于给药前第7天,给药后第15天,siRNA缀合物对PCSK9 mRNA的抑制率均高于56%,其中缀合物1和缀合物4对NHP肝组织中PCSK9 mRNA的抑制率分别高达79%和81%。It can be seen from Table 8 that a single administration of 9mg/kg, compared to the 7th day before administration and the 15th day after administration, the inhibition rate of siRNA conjugate on PCSK9 mRNA is higher than 56%. The inhibitory rates of compound 1 and conjugate 4 on PCSK9 mRNA in NHP liver tissue were as high as 79% and 81%, respectively.
(2-2)血清中PCSK9蛋白含量的检测(2-2) Detection of PCSK9 protein content in serum
对于施予缀合物4的NHP,在给药前D-15、D-9和D1各取一次静脉血,在给药后D3、D8、D14、D22和D29各采集一次静脉血,之后每周采血一次,持续采血18周至D127。For the NHP administered with Conjugate 4, venous blood was collected on D-15, D-9, and D1 before administration, and venous blood was collected on D3, D8, D14, D22, and D29 after administration. Blood was collected once a week and continued for 18 weeks until D127.
对于施予缀合物1或7的NHP,在给药前D-14、D-7和D1各取一次静脉血,在给药后D4、D8、D15、D22和D29各采集一次静脉血,之后每周采血一次,持续采血12周至D85。For the NHP administered with conjugate 1 or 7, venous blood was collected on D-14, D-7, and D1 before administration, and venous blood was collected on D4, D8, D15, D22, and D29 after administration. After that, blood was collected once a week for 12 weeks until D85.
采得各血样在室温下分离出血清。The blood samples were collected to separate serum at room temperature.
(2-2-1)施与缀合物4的食蟹猴血清中PCSK9蛋白含量的检测(2-2-1) Detection of PCSK9 protein content in cynomolgus monkey serum administered with Conjugate 4
选取施予缀合物4后D-9、D8、D14、D85、D92、D99、D106和D120的血清,使用Human Proprotein Convertase 9/PCSK9 Quantikine ELISA Kit(美国R&DSystems公司,货号DPC900)中的Calibrator Diluent RD5P(1:5稀释)试剂,将上述各时间点下获得的血清稀释25倍,按照试剂盒说明书的操作步骤,使用全自动酶标仪(SYNERGY TM MX,Biotek公司)检测450nm处各稀释血清的吸光度值。根据试剂盒中标准品各稀释浓度与其对应的吸光度值,利用Graphpad 5.0软件的线性回归功能建立标准曲线,并获得对应的线性方程式:Y=aX+b,其中a是拟合的直线斜率,b是当X=0时对应的Y值(截距)。将测得的各稀释血清的吸光度值带入上述方程式,可以计算出稀释血清中PCSK9蛋白含量,根据稀释倍数,获得各时间点血清中PCSK9蛋白含量。 Select the serum of D-9, D8, D14, D85, D92, D99, D106 and D120 after administration of conjugate 4, and use the Calibrator Diluent in the Human Proprotein Convertase 9/PCSK9 Quantikine ELISA Kit (R&DSystems, USA, DPC900) RD5P (1:5 dilution) reagent, dilute the serum obtained at each time point by 25 times, and use the automatic microplate reader (SYNERGY TM MX, Biotek) to detect each diluted serum at 450 nm according to the operating steps of the kit instructions The absorbance value. According to each dilution concentration of the standard in the kit and its corresponding absorbance value, use the linear regression function of Graphpad 5.0 software to establish a standard curve, and obtain the corresponding linear equation: Y=aX+b, where a is the slope of the fitted straight line, b Is the corresponding Y value (intercept) when X=0. The measured absorbance value of each diluted serum is brought into the above equation, and the PCSK9 protein content in the diluted serum can be calculated, and the PCSK9 protein content in the serum at each time point can be obtained according to the dilution factor.
标准化的PCSK9蛋白水平=(给药后PCSK9蛋白含量/给药前PCSK9蛋白含量)Normalized PCSK9 protein level = (PCSK9 protein content after administration/PCSK9 protein content before administration)
PCSK9蛋白表达的抑制率=(1-给药后PCSK9蛋白含量/给药前PCSK9蛋白含量)×100%。Inhibition rate of PCSK9 protein expression=(1-PCSK9 protein content after administration/PCSK9 protein content before administration)×100%.
其中,给药前PCSK9蛋白含量为D-9的PCSK9蛋白含量。Among them, the PCSK9 protein content before administration is the PCSK9 protein content of D-9.
以给药前为基准,对给药后各时间点PCSK9蛋白含量进行归一化;定义给药前PCSK9蛋白水平为100%,在图2中以D0表示;对食蟹猴单次皮下注射9mg/kg的缀合物4后,不同时间点下的血清中标准化的PCSK9蛋白水平展示于图2中。Taking pre-administration as the benchmark, normalize the PCSK9 protein content at each time point after administration; define the pre-administration PCSK9 protein level as 100%, which is represented by D0 in Figure 2; a single subcutaneous injection of 9 mg to cynomolgus monkeys After conjugate 4/kg, the normalized PCSK9 protein levels in serum at different time points are shown in Figure 2.
(2-2-2)施与缀合物1或7的食蟹猴血清中PCSK9蛋白含量的检测(2-2-2) Detection of PCSK9 protein content in cynomolgus monkey serum administered with conjugate 1 or 7
采用与(2-2-1)相同的方法,检测施与缀合物1或7的食蟹猴血清中PCSK9蛋白含量。不同在于,(1)选取了D-14、D-7、D8、D15、D22、D29、D36、D43、D50、D57、D64和D85的血清;(2)给药前PCSK9蛋白含量为D-14和D-7两个PCSK9蛋白含量的算术平均值。对食蟹猴单次皮下注射9mg/kg的缀合物1或7后,不同时间点下的血清中标准化的PCSK9蛋白水平展示于图2中。Using the same method as (2-2-1), the content of PCSK9 protein in the serum of cynomolgus monkeys administered with conjugate 1 or 7 was detected. The difference is that (1) the serum of D-14, D-7, D8, D15, D22, D29, D36, D43, D50, D57, D64, and D85 are selected; (2) the PCSK9 protein content before administration is D- The arithmetic mean of the two PCSK9 protein contents of 14 and D-7. After a single subcutaneous injection of 9 mg/kg of conjugate 1 or 7 in cynomolgus monkeys, the normalized PCSK9 protein levels in the serum at different time points are shown in Figure 2.
由图2可以看出,单次给药后第14天,缀合物4对NHP血清中PCSK9蛋白表达的抑制率高于90%,直至给药后第12周,缀合物4对PCSK9蛋白表达的抑制率始终维持在50%以上。It can be seen from Figure 2 that on the 14th day after a single administration, the inhibitory rate of conjugate 4 on the expression of PCSK9 protein in NHP serum was higher than 90%. Until the 12th week after administration, the conjugate 4 had an effect on PCSK9 protein. The inhibition rate of expression is always maintained above 50%.
对于缀合物7,单次给药后第22天,NHP血清中PCSK9蛋白表达的抑制率为82%,直至给药后第9周,缀合物7对PCSK9蛋白表达的抑制率始终维持在66%以上。For Conjugate 7, on the 22nd day after a single administration, the inhibition rate of PCSK9 protein expression in NHP serum was 82%. Until the 9th week after administration, the inhibition rate of conjugate 7 on PCSK9 protein expression was always maintained at 66% or more.
对于缀合物1,单次给药后第15天,NHP血清中PCSK9蛋白表达的抑制率为83%,直至给药后第7周,缀合物7对PCSK9蛋白表达的抑制率始终维持在65%以上。For Conjugate 1, on the 15th day after a single administration, the inhibition rate of PCSK9 protein expression in NHP serum was 83%. Until the 7th week after administration, the inhibition rate of conjugate 7 on PCSK9 protein expression was maintained at 65% or more.
(2-3)血清中血脂(LDL-c和CHO)含量的检测(2-3) Detection of blood lipids (LDL-c and CHO) in serum
(2-3-1)施予了缀合物4的食蟹猴血清中血脂(LDL-c和CHO)含量的检测(2-3-1) Detection of blood lipids (LDL-c and CHO) in the serum of cynomolgus monkeys administered with Conjugate 4
选取(2-2)中施予缀合物4后各个时间点下获得的血清,分别使用LDL-C测定试剂盒(DENUO CH7538,上海执诚生物科技有限公司)或CHOL测定试剂盒(DENUO CH7532,上海执诚生物科技有限公司),按其说明书的操作方法,在全自动生化仪(日立7060)上检测各时间点下血清中血脂(LDL-c或CHO)的含量。Select the serum obtained at each time point after the administration of conjugate 4 in (2-2), and use the LDL-C assay kit (DENUO CH7538, Shanghai Zhicheng Biotechnology Co., Ltd.) or CHOL assay kit (DENUO CH7532). , Shanghai Zhicheng Biological Technology Co., Ltd.), according to the operating method of its manual, detect the blood lipid (LDL-c or CHO) content in the serum at each time point on the automatic biochemical analyzer (Hitachi 7060).
标准化的血脂水平=(给药后血脂含量/给药前血脂含量)×100%。Normalized blood lipid level=(blood lipid content after administration/blood lipid content before administration)×100%.
血脂的抑制率=(1-给药后血脂含量/给药前血脂含量)×100%。Inhibition rate of blood lipid = (1-blood lipid content after administration / blood lipid content before administration) × 100%.
其中,给药前血脂含量为给药前D-15、D-9和D1三次血脂的算术平均值;血脂指LDL-c或CHO。Among them, the blood lipid content before administration is the arithmetic mean of the three blood lipids of D-15, D-9 and D1 before administration; blood lipid refers to LDL-c or CHO.
以给药前为基准,对给药后各时间点血脂含量进行归一化;定义给药前的血脂水平为100%,在图3和图4中以D0表示。Taking pre-administration as a benchmark, normalize the blood lipid content at each time point after administration; define the pre-administration blood lipid level as 100%, which is represented by D0 in Figs. 3 and 4.
对食蟹猴单次皮下注射9mg/kg的缀合物4后,不同时间点下的血清中标准化的LDL-c水平和标准化的CHO水平分别展示于图3、图4中。After a single subcutaneous injection of 9 mg/kg of conjugate 4 in cynomolgus monkeys, the normalized LDL-c levels and normalized CHO levels in the serum at different time points are shown in Figure 3 and Figure 4, respectively.
(2-3-2)施予了缀合物7的食蟹猴血清中血脂(LDL-c和CHO)含量的检测(2-3-2) Detection of blood lipids (LDL-c and CHO) in the serum of cynomolgus monkeys administered with Conjugate 7
采用与(2-3-1)相同的方法,检测施与缀合物7的食蟹猴血清中血脂(LDL-c和CHO)含量。不同在于,(1)选取(2-2)中施予缀合物7后各个时间点下获得的血清进行血脂检测;(2)给药前血脂含量为给药前D-14、D-7和D1三次血脂的算术平均值。对食蟹猴单次皮下注射9mg/kg的缀合物7后,不同时间点下的血清中标准化的LDL-c水平和标准化的CHO水平分别展示于图3、图4中。Using the same method as (2-3-1), the blood lipid (LDL-c and CHO) content in the serum of cynomolgus monkeys administered with Conjugate 7 was detected. The difference is that (1) the serum obtained at each time point after administration of conjugate 7 in (2-2) is selected for blood lipid detection; (2) the blood lipid content before administration is D-14, D-7 before administration And D1 the arithmetic average of three blood lipids. After a single subcutaneous injection of 9 mg/kg of conjugate 7 in cynomolgus monkeys, the normalized LDL-c levels and normalized CHO levels in the serum at different time points are shown in Figure 3 and Figure 4, respectively.
从图3可以看出,单次给药后第14天起,缀合物4对LDL-c有显著抑制,其中给药后第22天,缀合物4对LDL-c的抑制率高达64%;从给药后的第2周至第11周期间,缀合物4对LDL-c的抑制率始终维持在50%以上;在长达127天的观察周期内,施予缀合物4的NHP的血清LDL-c水平始终低于给药前。It can be seen from Figure 3 that starting from the 14th day after a single administration, Conjugate 4 has a significant inhibitory effect on LDL-c, and on the 22nd day after administration, the inhibitory rate of Conjugate 4 on LDL-c is as high as 64 %; From the second week to the 11th week after administration, the inhibitory rate of conjugate 4 on LDL-c has always been maintained above 50%; during the observation period of up to 127 days, conjugate 4 was administered The serum LDL-c level of NHP is always lower than before administration.
对于缀合物7,单次给药后第22天,LDL-c的抑制率为36%;从给药后的第2周至第4周期间,LDL-c的抑制率维持在30%左右;在长达11周的观察期内,施予缀合物7的NHP的血清LDL-c水平始终低于给药前。For conjugate 7, the inhibition rate of LDL-c was 36% on the 22nd day after a single administration; from the second week to the fourth week after the administration, the inhibition rate of LDL-c was maintained at about 30%; During the observation period of up to 11 weeks, the serum LDL-c level of NHP administered with conjugate 7 was always lower than before administration.
从图4可以看出,单次给药后第14天起,缀合物4对CHO也有显著抑制,其中给药后第22天,缀合物4对CHO抑制率达38%;从给药后的第2周至第8周期间,缀合物4对CHO的抑制率始终维持在30%以上;在长达127天的观察周期内,施予缀合物4的NHP的血清CHO水平始终低于给药前。It can be seen from Figure 4 that starting from the 14th day after a single administration, Conjugate 4 also has a significant inhibitory effect on CHO, and on the 22nd day after administration, the inhibitory rate of Conjugate 4 on CHO reached 38%; From the second week to the eighth week, the inhibition rate of Conjugate 4 on CHO was always maintained above 30%; during the observation period of 127 days, the serum CHO level of NHP administered to Conjugate 4 was always low Before administration.
对于缀合物7,单次给药后第22天,CHO的抑制率为38%;从给药后的第2周至第8周期间,CHO的抑制率基本维持在30%以上;在长达11周的观察期内,施予缀合物7的NHP的血清CHO水平始终低于给药前。For Conjugate 7, the inhibition rate of CHO was 38% on the 22nd day after a single administration; the inhibition rate of CHO was basically maintained above 30% from the 2nd week to the 8th week after administration; During the 11-week observation period, the serum CHO level of NHP administered with conjugate 7 was always lower than before administration.
(2-4)肝脏穿刺术前后的血常规与凝血功能检测(2-4) Blood routine and coagulation function test before and after liver puncture
在肝脏穿刺术的前后,对施予缀合物4或5的动物进行静脉取血。分别使用全自动五分类血液分析仪(ADVIA 2120/ADVIA 2120i,德国西门子公司)和全自动血凝分析仪(CA-7000/CS-2000i,日本希森美康公司)检测血常规和凝血功能。结果表明,给药 后相对于给药前,各缀合物对血常规和凝血功能的影响无显著性差异,表现出本公开提供的siRNA缀合物具有较好的生物安全性。Before and after liver puncture, the animals administered with conjugate 4 or 5 were subjected to intravenous blood sampling. The automatic five-category hematology analyzer (ADVIA 2120/ADVIA 2120i, Siemens, Germany) and the automatic blood coagulation analyzer (CA-7000/CS-2000i, Sysmex Corporation, Japan) were used to test blood routine and coagulation function. The results show that there is no significant difference in the effects of each conjugate on blood routine and coagulation function after administration compared to before administration, showing that the siRNA conjugate provided in the present disclosure has better biological safety.
实验例3 siRNA缀合物在大小鼠中的毒性评价Experimental example 3 Toxicity evaluation of siRNA conjugate in rats and mice
本实验例通过观察分别施予缀合物1、4或7的大鼠或小鼠的临床毒性反应,检测肝重、血常规、血生化、血脂等指标,并进行大体解剖与组织病理学检测,评价本公开的siRNA缀合物在小动物体内的毒性反应。In this experimental example, by observing the clinical toxicity of rats or mice administered with conjugate 1, 4 or 7, respectively, the liver weight, blood routine, blood biochemistry, blood lipids and other indicators were detected, and gross anatomy and histopathological examinations were performed To evaluate the toxicity of the siRNA conjugates of the present disclosure in small animals.
(3-1)大鼠毒性评价(3-1) Rat toxicity evaluation
(3-1-1)施予缀合物1或4的SD大鼠毒性检测(3-1-1) Toxicity test in SD rats administered with conjugate 1 or 4
选取6-9周龄,体重210-250g的SPF级SD大鼠(购于北京维通利华实验动物技术有限公司,生产许可证号:SCXK(京)2016-0011或SCXK(京)2016-0006),皆为雄性,按照体重分为3组,每组5只,分别皮下注射缀合物1、缀合物4或1×PBS(pH 7.4)对照。根据体重计算药量,各缀合物用1×PBS(pH 7.4)配置成60mg/ml的溶液,给药体积为5ml/kg,给药剂量为300mg/kg。Select SPF SD rats aged 6-9 weeks and weighing 210-250g (purchased from Beijing Weitong Lihua Experimental Animal Technology Co., Ltd., production license number: SCXK (京) 2016-0011 or SCXK (京) 2016- 0006), all males were divided into 3 groups according to their body weights, 5 animals in each group, and conjugate 1, conjugate 4 or 1×PBS (pH 7.4) control were injected subcutaneously. The dose is calculated based on body weight, and each conjugate is prepared into a 60 mg/ml solution with 1×PBS (pH 7.4), the administration volume is 5 ml/kg, and the administration dose is 300 mg/kg.
单次皮下给药后,检测如下指标:After a single subcutaneous administration, test the following indicators:
(1)一般状态观察:每天2次一般状态观察;(1) General status observation: 2 general status observations per day;
(2)体重:给药前D1、给药后D3、D6、D10、D14及解剖日D15分别测定体重;(2) Body weight: measure the body weight on D1 before administration, D3, D6, D10, D14 after administration and D15 on the anatomy day;
(3)摄食量:D2-3、D6-7、D12-13,分别测定摄食量;(3) Food intake: D2-3, D6-7, D12-13, measure food intake respectively;
(4)血液学:解剖前D15,自大鼠腹主动脉采血1.9ml,其中1.0mL血液样品以EDTA-K2抗凝,全血直接进样检测下述血液细胞学指标(包括红细胞计数(RBC)、白细胞计数(WBC)、血小板计数(PLT)、血红蛋白(HGB)、红细胞容积(HCT)、平均红细胞容积(MCV)、平均红细胞血红蛋白(MCH)、平均红细胞血红蛋白浓度(MCHC)、网织红细胞计数(RET)、网织红细胞百分比(RET%)、中性粒细胞(NEU)计数及百分比、淋巴细胞(LYM)计数及百分比、单核细胞(MONO)计数及百分比、嗜酸性粒细胞(EOS)计数及百分比、以及嗜碱性粒细胞(BASO)计数及百分比);剩余0.9mL血液样品以枸橼酸钠抗凝,15~25℃下离心力1800×g离心10分钟,分离血浆,用以检测凝血时间(凝血酶原时间(PT)和活化部分凝血酶时间(APTT));(4) Hematology: 1.9ml blood was collected from the rat abdominal aorta on D15 before anatomy, of which 1.0ml blood sample was anticoagulated with EDTA-K2, and whole blood was directly injected to detect the following blood cytological indicators (including red blood cell count (RBC) ), white blood cell count (WBC), platelet count (PLT), hemoglobin (HGB), red blood cell volume (HCT), average red blood cell volume (MCV), average red blood cell hemoglobin (MCH), average red blood cell hemoglobin concentration (MCHC), reticulocyte Count (RET), reticulocyte percentage (RET%), neutrophil (NEU) count and percentage, lymphocyte (LYM) count and percentage, monocyte (MONO) count and percentage, eosinophil (EOS) ) Counts and percentages, and basophils (BASO) counts and percentages); the remaining 0.9mL blood sample is anticoagulated with sodium citrate and centrifuged at 1800×g at 15~25℃ for 10 minutes to separate the plasma. Detection of clotting time (prothrombin time (PT) and activated partial thrombin time (APTT));
(5)血生化:给药后D2自大鼠颈静脉采血0.6ml,D15解剖前自大鼠腹主动脉采血3ml,均不抗凝,15~25℃下离心力1800×g离心10分钟,分离血清进行检测碱性磷酸酶(ALP)、丙氨酸氨基转移酶(ALT)、天门冬氨酸氨基转移酶(AST)、肌酸激酶(CK)、乳酸脱氢酶(LDH)、γ-谷氨酰转移酶(GGT)、尿素(Urea)、肌酐(Crea)、钠离子浓度(Na +)、钾离子浓度(K +)、氯离子(Cl -)、血糖(GLU)、总胆红素(TBIL)、总蛋白(TP)、白蛋白(ALB)和白球比(A/G)血生化指标; (5) Blood biochemistry: 0.6ml of blood was collected from the jugular vein of the rat after administration on D2, and 3ml of blood was collected from the rat abdominal aorta before dissection on D15, none of which was anticoagulant. Centrifuge at 1800×g for 10 minutes at 15~25℃ for separation. Serum is tested for alkaline phosphatase (ALP), alanine aminotransferase (ALT), aspartate aminotransferase (AST), creatine kinase (CK), lactate dehydrogenase (LDH), γ-gluten glutamyl transferase (GGT), urea (urea), creatinine (Crea), the sodium ion concentration (Na +), potassium ion concentration (K +), chloride ion (Cl -), glucose (GLU), total bilirubin (TBIL), total protein (TP), albumin (ALB) and white sphere ratio (A/G) blood biochemical indicators;
(6)大体解剖及组织病理学检测:D15进行动物解剖,对各脏器进行称重,及组织病理学检测。(6) Gross anatomy and histopathological examination: Animal anatomy on D15, weighing of various organs, and histopathological examination.
(3-1-2)施予缀合物7的SD大鼠毒性检测(3-1-2) Toxicity detection in SD rats administered with conjugate 7
采用与(3-1-1)相同的方法,检测施予了缀合物7的SD大鼠毒性,不同的是,用缀合物7代替缀合物4,缀合物7用1×PBS(pH 7.4)分别配置成20mg/ml和6mg/ml的溶液,给药体积为5ml/kg,给药剂量分别为100mg/kg和30mg/kg。对于指标(5)血生化,分别在给药后D8和D15解剖前采血。The same method as (3-1-1) was used to detect the toxicity of SD rats administered with Conjugate 7, except that Conjugate 7 was used instead of Conjugate 4, and Conjugate 7 was treated with 1×PBS (pH 7.4) It is configured into 20mg/ml and 6mg/ml solutions, the administration volume is 5ml/kg, and the administration dose is 100mg/kg and 30mg/kg respectively. For index (5) blood biochemistry, blood was collected on D8 and D15 before dissection after administration.
结果表明,各缀合物在大鼠上均未表现出明显的毒性。The results showed that none of the conjugates showed obvious toxicity in rats.
(3-2)小鼠毒性评价(3-2) Evaluation of toxicity in mice
选取5-6周龄的SPF级ICR小鼠(购自斯贝福(北京)生物技术有限公司),雌雄各半,每组10只,分别皮下注射缀合物1、缀合物4或缀合物7。给药频率为每周一次、连续2周,共给药3次,分别在D1、D8和D15给药。根据体重计算药量,各缀合物用1×PBS(pH 7.4)配置成30mg/ml的溶液,给药体积为10ml/kg,给药剂量为300mg/kg。Select 5-6 weeks old SPF grade ICR mice (purchased from Sibefu (Beijing) Biotechnology Co., Ltd.), half male and half male, 10 mice in each group, subcutaneously injected conjugate 1, conjugate 4 or conjugate respectively Compound 7. The frequency of administration is once a week for 2 consecutive weeks, a total of 3 administrations, respectively on D1, D8 and D15. The dose is calculated based on body weight, and each conjugate is prepared into a 30 mg/ml solution with 1×PBS (pH 7.4), the administration volume is 10 ml/kg, and the administration dose is 300 mg/kg.
3次给药后,检测如下指标:After 3 doses, test the following indicators:
(1)一般状态观察:每天1次一般状态观察;(1) General status observation: 1 general status observation per day;
(2)体重:D1、D8、D15给药前及解剖日D16分别测定体重;(2) Body weight: Measure body weight before administration on D1, D8, D15 and D16 on the day of anatomy;
(3)摄食量:每周测定一次;(3) Food intake: measured once a week;
(4)血生化:解剖日D16经摘眼球采血1ml,不抗凝,先于37℃孵育60min,再于4℃,3000rpm下离心15min获得血清,进行血生化检测,检测指标与上述大鼠毒性检测的血生化指标相同。(4) Blood biochemistry: 1ml of blood was collected by eyeball removal on D16 on the day of anatomy, without anticoagulation. The serum was obtained by incubating at 37°C for 60 minutes, and then centrifuged at 4°C and 3000 rpm for 15 minutes. The blood biochemical indicators tested are the same.
(5)大体解剖及组织病理学检测:D16进行动物解剖,对各脏器进行称重,及组织病理学检测。(5) Gross anatomy and histopathological examination: Animal anatomy on D16, weighing of various organs, and histopathological examination.
结果表明,各缀合物在小鼠上均未表现出明显的毒性。The results showed that none of the conjugates showed obvious toxicity in mice.
上述结果说明,本公开的缀合物具有较好的生物安全性。The above results indicate that the conjugates of the present disclosure have better biological safety.
以上详细描述了本公开的一些实施方式,但是,本公开并不限于上述实施方式中的具体细节,在本公开的技术构思范围内,可以对本公开的技术方案进行多种简单变型,这些简单变型均属于本公开的保护范围。Some embodiments of the present disclosure are described in detail above. However, the present disclosure is not limited to the specific details in the above-mentioned embodiments. Within the scope of the technical concept of the present disclosure, various simple modifications can be made to the technical solutions of the present disclosure. These simple modifications All belong to the protection scope of the present disclosure.
另外需要说明的是,在上述一些实施方式中所描述的各个具体技术特征,在不矛盾的情况下,可以通过任何合适的方式进行组合,为了避免不必要的重复,本公开对各种可能的组合方式不再另行说明。In addition, it should be noted that the various specific technical features described in some of the above embodiments can be combined in any suitable manner without contradiction. In order to avoid unnecessary repetition, the present disclosure has The combination method will not be explained separately.
此外,本公开的各种不同的实施方式之间也可以进行任意组合,只要其不违背本公开的思想,其同样应当视为本公开所公开的内容。In addition, various different embodiments of the present disclosure can also be combined arbitrarily, as long as they do not violate the idea of the present disclosure, they should also be regarded as the content disclosed in the present disclosure.

Claims (58)

  1. 一种siRNA缀合物,其中,所述缀合物具有式(308)所示的结构:A siRNA conjugate, wherein the conjugate has a structure represented by formula (308):
    Figure PCTCN2020091489-appb-100001
    Figure PCTCN2020091489-appb-100001
    其中,among them,
    n1为选自1-3的整数,n3为选自0-4的整数;每个m1、m2或m3各自独立地为选自2-10的整数;R 10、R 11、R 12、R 13、R 14或R 15各自独立地为H,或选自于由以下基团所组成的组:C 1-C 10烷基、C 1-C 10卤代烷基以及C 1-C 10烷氧基; n1 is an integer selected from 1-3, n3 is an integer selected from 0-4; each m1, m2, or m3 is each independently an integer selected from 2-10; R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently H, or selected from the group consisting of C 1 -C 10 alkyl, C 1 -C 10 haloalkyl, and C 1 -C 10 alkoxy;
    R 3为式A59所示结构的基团: R 3 is a group represented by the formula A59:
    Figure PCTCN2020091489-appb-100002
    Figure PCTCN2020091489-appb-100002
    其中,E 1为OH、SH或BH 2Among them, E 1 is OH, SH or BH 2 ,
    Nu为siRNA,所述siRNA含有正义链和反义链,所述siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,所述核苷酸序列I和所述核苷酸序列II选自如下i)-vi)所示序列中的一组:Nu is siRNA, the siRNA contains a sense strand and an antisense strand, each nucleotide in the siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleotide sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, the nucleotide sequence I and the nucleotide sequence II The nucleotide sequence II is selected from a group of the following sequences i)-vi):
    i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列长度相等,且不多于3个核苷酸差异:i) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1 are equal in length, and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 2 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
    5'-AAGCAAGCAGACAUUUAUZ 1-3'(SEQ ID NO:1); 5'-AAGCAAGCAGACAUUUAUZ 1 -3' (SEQ ID NO:1);
    5'-Z 2AUAAAUGUCUGCUUGCUU-3'(SEQ ID NO:2), 5'-Z 2 AUAAAUGUCUGCUUGCUU-3' (SEQ ID NO: 2),
    其中,Z 1为C,Z 2为G,所述核苷酸序列I中包含位置对应于Z 1的核苷酸Z 3,所述核苷酸序列II中包含位置对应于Z 2的核苷酸Z 4,所述Z 4是所述反义链5'末端的第一个核苷酸; Wherein, Z 1 is C, Z 2 is G, the nucleotide sequence I contains a nucleotide Z 3 whose position corresponds to Z 1 , and the nucleotide sequence II contains a nucleoside whose position corresponds to Z 2 Acid Z 4 , where Z 4 is the first nucleotide at the 5'end of the antisense strand;
    ii)所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列长度相等,且不多于3个核苷酸差异:ii) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 62 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
    5'-UUUGUAGCAUUUUUAUUAZ 5-3'(SEQ ID NO:61); 5'-UUUGUAGCAUUUUUAUUAZ 5 -3' (SEQ ID NO: 61);
    5'-Z 6UAAUAAAAAUGCUACAAA-3'(SEQ ID NO:62), 5'-Z 6 UAAUAAAAAUGCUACAAA-3' (SEQ ID NO: 62),
    其中,Z 5为A,Z 6为U,所述核苷酸序列I中包含位置对应于Z 5的核苷酸Z 7,所述核苷酸序列II中包含位置对应于Z 6的核苷酸Z 8,所述Z 8是所述反义链5'末端的第一个核苷酸; Wherein, Z 5 is A, Z 6 is U, the nucleotide sequence I contains a nucleotide Z 7 whose position corresponds to Z 5 , and the nucleotide sequence II contains a nucleoside whose position corresponds to Z 6 Acid Z 8 , said Z 8 being the first nucleotide at the 5'end of the antisense strand;
    iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列长度相等,且不多于3个核苷酸差异:iii) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121 are the same in length and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 122 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
    5'-GCCUGGAGUUUAUUCGGAZ 9-3'(SEQ ID NO:121); 5'-GCCUGGAGUUUAUUCGGAZ 9 -3' (SEQ ID NO: 121);
    5'-Z 10UCCGAAUAAACUCCAGGC-3'(SEQ ID NO:122), 5'-Z 10 UCCGAAUAAACUCCAGGC-3' (SEQ ID NO: 122),
    其中,Z 9为A,Z 10为U,所述核苷酸序列I中包含位置对应于Z 9的核苷酸Z 11,所述核苷酸序列II中包含位置对应于Z 10的核苷酸Z 12,所述Z 12是所述反义链5'末端的第一个核苷酸; Wherein, Z 9 is A, Z 10 is U, the nucleotide sequence I contains the nucleotide Z 11 whose position corresponds to Z 9 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 10 Acid Z 12 , where Z 12 is the first nucleotide at the 5'end of the antisense strand;
    iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列长度相等,且不多于3个核苷酸差异:iv) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 182 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
    5'-CUGUUUUGCUUUUGUAACZ 13-3'(SEQ ID NO:181); 5'-CUGUUUUGCUUUUGUAACZ 13 -3' (SEQ ID NO: 181);
    5'-Z 14GUUACAAAAGCAAAACAG-3'(SEQ ID NO:182), 5'-Z 14 GUUACAAAAGCAAAACAG-3' (SEQ ID NO: 182),
    其中,Z 13为U,Z 14为A,所述核苷酸序列I中包含位置对应于Z 13的核苷酸Z 15,所述核苷酸序列II中包含位置对应于Z 14的核苷酸Z 16,所述Z 16是所述反义链5'末端的第一个核苷酸; Wherein, Z 13 is U, Z 14 is A, the nucleotide sequence I contains the nucleotide Z 15 whose position corresponds to Z 13 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 14 Acid Z 16 , where Z 16 is the first nucleotide at the 5'end of the antisense strand;
    v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列长度相等,且不多于3个核苷酸 差异,且所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列长度相等,且不多于3个核苷酸差异:v) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 242 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
    5'-GGUUUUGUAGCAUUUUUAZ 17-3'(SEQ ID NO:241); 5'-GGUUUUGUAGCAUUUUUAZ 17 -3' (SEQ ID NO: 241);
    5'-Z 18UAAAAAUGCUACAAAACC-3'(SEQ ID NO:242), 5'-Z 18 UAAAAAUGCUACAAAACC-3' (SEQ ID NO: 242),
    其中,Z 17为U,Z 18为A,所述核苷酸序列I中包含位置对应于Z 17的核苷酸Z 19,所述核苷酸序列II中包含位置对应于Z 18的核苷酸Z 20,所述Z 20是所述反义链5'末端的第一个核苷酸;并且 Wherein, Z 17 is U, Z 18 is A, the nucleotide sequence I contains the nucleotide Z 19 whose position corresponds to Z 17 and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 18 Acid Z 20 , said Z 20 being the first nucleotide at the 5'end of the antisense strand; and
    vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列长度相等,且不多于3个核苷酸差异:vi) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 302 The nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
    5'-GUGACUUUUUAAAAUAAAZ 21-3'(SEQ ID NO:301); 5'-GUGACUUUUUAAAAUAAAZ 21 -3' (SEQ ID NO: 301);
    5'-Z 22UUUAUUUUAAAAAGUCAC-3'(SEQ ID NO:302), 5'-Z 22 UUUAUUUUAAAAAGUCAC-3' (SEQ ID NO: 302),
    其中,Z 21为A,Z 22为U,所述核苷酸序列I中包含位置对应于Z 21的核苷酸Z 23,所述核苷酸序列II中包含位置对应于Z 22的核苷酸Z 24,所述Z 24是所述反义链5'末端的第一个核苷酸; Wherein, Z 21 is A, Z 22 is U, the nucleotide sequence I contains the nucleotide Z 23 whose position corresponds to Z 21 , and the nucleotide sequence II contains the nucleoside whose position corresponds to Z 22 Acid Z 24 , said Z 24 being the first nucleotide at the 5'end of the antisense strand;
    R 2是长度为1-20个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自于以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中R 2可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、-SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、-N(C 1-C 10烷基)(C 1-C 10烷基苯基)、-NH(C 1-C 10烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤代烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基); R 2 is a linear alkylene group with a length of 1-20 carbon atoms, wherein one or more carbon atoms are optionally replaced by any one or more selected from the group consisting of: C (O), NH, O, S, CH=N, S(O) 2 , C 2 -C 10 alkenylene, C 2 -C 10 alkynylene, C 6 -C 10 arylene, C 3- C 18 heterocyclylene and C 5 -C 10 heteroarylene; and wherein R 2 may optionally have any one or more substituents in the group consisting of: C 1 -C 10 Alkyl, C 6 -C 10 aryl, C 5 -C 10 heteroaryl, C 1 -C 10 haloalkyl, -OC 1 -C 10 alkyl, -OC 1 -C 10 alkylphenyl, -C 1 -C 10 alkyl -OH, -OC 1 -C 10 haloalkyl, -SC 1 -C 10 alkyl, -SC 1 -C 10 alkylphenyl, -C 1 -C 10 alkyl -SH,- SC 1 -C 10 haloalkyl, halogen substituent, -OH, -SH, -NH 2 , -C 1 -C 10 alkyl -NH 2 , -N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl), -NH (C 1 -C 10 alkyl), -N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl phenyl), -NH (C 1 -C 10 alkyl) Phenyl), cyano, nitro, -CO 2 H, -C(O)O (C 1 -C 10 alkyl), -CON (C 1 -C 10 alkyl) (C 1 -C 10 alkyl) ), -CONH (C 1 -C 10 alkyl), -CONH 2 , -NHC(O) (C 1 -C 10 alkyl), -NHC(O) (phenyl), -N(C 1 -C 10 alkyl) C (O) (C 1 -C 10 alkyl), -N (C 1 -C 10 alkyl) C (O) (phenyl), -C (O) C 1 -C 10 alkyl , -C(O)C 1 -C 10 alkylphenyl, -C(O)C 1 -C 10 haloalkyl, -OC(O)C 1 -C 10 alkyl, -SO 2 (C 1 -C 10 alkyl), -SO 2 (phenyl), -SO 2 (C 1 -C 10 haloalkyl), -SO 2 NH 2 , -SO 2 NH (C 1 -C 10 alkyl), -SO 2 NH (phenyl), - NHSO 2 (C 1 -C 10 alkyl), - NHSO 2 (phenyl), and -NHSO 2 (C 1 -C 10 haloalkyl);
    每个L 1各自独立地是长度为1-70个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自于以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中,L 1可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、-SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、-N(C 1-C 10烷基)(C 1-C 10烷基苯基)、-NH(C 1-C 10烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤代烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基); Each L 1 is independently a linear alkylene group with a length of 1 to 70 carbon atoms, wherein one or more carbon atoms are optionally selected from any one or more of the following groups Replaced by: C(O), NH, O, S, CH=N, S(O) 2 , C 2 -C 10 alkenylene, C 2 -C 10 alkynylene, C 6 -C 10 arylene Group, C 3 -C 18 heterocyclylene and C 5 -C 10 heteroarylene; and wherein, L 1 may optionally have any one or more substituents in the group consisting of the following groups :C 1 -C 10 alkyl, C 6 -C 10 aryl, C 5 -C 10 heteroaryl, C 1 -C 10 haloalkyl, -OC 1 -C 10 alkyl, -OC 1 -C 10 alkane Alkyl phenyl, -C 1 -C 10 alkyl-OH, -OC 1 -C 10 haloalkyl, -SC 1 -C 10 alkyl, -SC 1 -C 10 alkyl phenyl, -C 1 -C 10 Alkyl -SH, -SC 1 -C 10 haloalkyl, halogen substituent, -OH, -SH, -NH 2 , -C 1 -C 10 alkyl -NH 2 , -N(C 1 -C 10 alkyl ) (C 1 -C 10 alkyl), -NH (C 1 -C 10 alkyl), -N (C 1 -C 10 alkyl) (C 1 -C 10 alkyl phenyl), -NH (C 1 -C 10 alkyl phenyl), cyano, nitro, -CO 2 H, -C(O)O (C 1 -C 10 alkyl), -CON (C 1 -C 10 alkyl) (C 1 -C 10 alkyl), -CONH (C 1 -C 10 alkyl), -CONH 2 , -NHC(O) (C 1 -C 10 alkyl), -NHC(O)(phenyl),- N(C 1 -C 10 alkyl)C(O)(C 1 -C 10 alkyl), -N(C 1 -C 10 alkyl)C(O)(phenyl), -C(O)C 1 -C 10 alkyl, -C(O)C 1 -C 10 alkylphenyl, -C(O)C 1 -C 10 haloalkyl, -OC(O)C 1 -C 10 alkyl, -SO 2 (C 1 -C 10 alkyl), -SO 2 (phenyl), -SO 2 (C 1 -C 10 haloalkyl), -SO 2 NH 2 , -SO 2 NH (C 1 -C 10 alkyl) ), - SO 2 NH (phenyl), - NHSO 2 (C 1 -C 10 alkyl), - NHSO 2 (phenyl), and -NHSO 2 (C 1 -C 10 haloalkyl);
    Figure PCTCN2020091489-appb-100003
    表示基团共价连接的位点;M 1表示靶向基团。
    Figure PCTCN2020091489-appb-100003
    Represents the site where the group is covalently attached; M 1 represents the targeting group.
  2. 如权利要求1所述的siRNA缀合物,其中,每个L 1独立地选自于由(A1)-(A26)基团及其任意组合所组成的组: The siRNA conjugate of claim 1, wherein each L 1 is independently selected from the group consisting of (A1)-(A26) groups and any combination thereof:
    Figure PCTCN2020091489-appb-100004
    Figure PCTCN2020091489-appb-100004
    Figure PCTCN2020091489-appb-100005
    Figure PCTCN2020091489-appb-100005
    其中,每个j1独立地为1-20的整数;每个j2独立地为1-20的整数;Wherein, each j1 is independently an integer of 1-20; each j2 is independently an integer of 1-20;
    每个R'独立地为C 1-C 10烷基; Each R'is independently C 1 -C 10 alkyl;
    每个Ra独立地选自于由式(A27)-(A45)所示的基团或其任意组合所组成的组:Each Ra is independently selected from the group consisting of groups represented by formulas (A27)-(A45) or any combination thereof:
    Figure PCTCN2020091489-appb-100006
    Figure PCTCN2020091489-appb-100006
    Figure PCTCN2020091489-appb-100007
    Figure PCTCN2020091489-appb-100007
    每个Rb独立地为C 1-C 10烷基; Each Rb is independently C 1 -C 10 alkyl;
    或者L 1选自A1、A4、A5、A6、A8、A10、A11、A13中的一种或多种的连接组合; Or L 1 is selected from a connection combination of one or more of A1, A4, A5, A6, A8, A10, A11, and A13;
    或者L 1选自A1、A4、A8、A10和A11中至少2个的连接组合; Or L 1 is selected from the connection combination of at least two of A1, A4, A8, A10 and A11;
    或者,L 1选自A1、A8、A10中至少2个的连接组合; Or, L 1 is selected from a connection combination of at least two of A1, A8, and A10;
    或者,L 1的长度为3-25个原子; Or, the length of L 1 is 3-25 atoms;
    或者,L 1的长度为4-15个原子; Or, the length of L 1 is 4-15 atoms;
    Figure PCTCN2020091489-appb-100008
    表示基团共价连接的位点。
    Figure PCTCN2020091489-appb-100008
    Represents the point at which the group is covalently attached.
  3. 如权利要求2所述的siRNA缀合物,其中,j1为2-10的整数,j2为2-10的整数,R'为C 1-C 4烷基,Ra为A27、A28、A29、A30和A31中的一种,Rb为C 1-C 5烷基; The siRNA conjugate according to claim 2, wherein j1 is an integer of 2-10, j2 is an integer of 2-10, R'is a C 1 -C 4 alkyl group, and Ra is A27, A28, A29, A30 And one of A31, Rb is C 1 -C 5 alkyl;
    或者j1为3-5的整数,j2为3-5的整数,R'为甲基、乙基和异丙基中的一种,Ra为式(A27)所示的基团或式(A28)所示的基团,Rb为甲基、乙基、异丙基和丁基中的一种。Or j1 is an integer of 3-5, j2 is an integer of 3-5, R'is one of methyl, ethyl and isopropyl, and Ra is a group represented by formula (A27) or formula (A28) In the shown group, Rb is one of methyl, ethyl, isopropyl and butyl.
  4. 如权利要求1-3中任一项所述的siRNA缀合物,其中,n1为1-2的整数,n3为0-1的整数,且n1+n3=2-3。The siRNA conjugate according to any one of claims 1-3, wherein n1 is an integer of 1-2, n3 is an integer of 0-1, and n1+n3=2-3.
  5. 如权利要求1-4中任一项所述的siRNA缀合物,其中,每个m1、m2或m3各自独立地为2-5的整数,和/或m1=m2=m3。The siRNA conjugate according to any one of claims 1 to 4, wherein each m1, m2 or m3 is each independently an integer of 2-5, and/or m1=m2=m3.
  6. 如权利要求1-5中任一项所述的siRNA缀合物,其中,每个所述靶向基团独立地为与哺乳动物肝细胞表面的去唾液酸糖蛋白受体具有亲合力的配体;The siRNA conjugate according to any one of claims 1-5, wherein each of the targeting groups is independently a ligand that has affinity with the asialoglycoprotein receptor on the surface of mammalian liver cells. body;
    或者,每个所述靶向基团独立地为去唾液酸糖蛋白或糖;Alternatively, each of the targeting groups is independently asialoglycoprotein or sugar;
    或者,每个所述靶向基团独立地选自D-吡喃甘露糖、L-吡喃甘露糖、D-阿拉伯糖、D-呋喃木糖、L-呋喃木糖、D-葡萄糖、L-葡萄糖、D-半乳糖、L-半乳糖、α-D-呋喃甘露糖、β-D-呋喃甘露糖、α-D-吡喃甘露糖、β-D-吡喃甘露糖、α-D-吡喃葡萄糖、β-D-吡喃葡萄糖、α-D-呋喃葡萄糖、β-D-呋喃葡萄糖、α-D-呋喃果糖、α-D-吡喃果糖、α-D-吡喃半乳糖、β-D-吡喃半乳糖、α-D-呋喃半乳糖、β-D-呋喃半乳糖、葡糖胺、唾液酸、半乳糖胺、N-乙酰半乳糖胺、N-三氟乙酰半乳糖胺、N-丙酰半乳糖胺、N-正丁酰半乳糖胺、N-异丁酰半乳糖胺、2-氨基-3-O-[(R)-1-羧乙基]-2-脱氧-β-D-吡喃葡萄糖、2-脱氧-2-甲基氨基-L-吡喃葡萄糖、4,6-二脱氧-4-甲酰胺基-2,3-二-O-甲基-D-吡喃甘露糖、2-脱氧-2-磺氨基-D-吡喃葡萄糖、N-乙醇酰基-α-神经氨酸、5-硫代-β-D-吡喃葡萄糖、2,3,4-三-O-乙酰基-1-硫代-6-O-三苯甲基-α-D-吡喃葡萄糖苷甲酯、4-硫代-β-D-吡喃半乳糖、3,4,6,7-四-O-乙酰基-2-脱氧-1,5-二硫代-α-D-吡喃葡庚糖苷乙酯、2,5-脱水-D-阿洛糖腈、核糖、D-核糖、D-4-硫代核糖、L-核糖、L-4-硫代核糖中的一种;Alternatively, each of the targeting groups is independently selected from D-mannanose, L-mannanose, D-arabinose, D-xylofuranose, L-xylofuranose, D-glucose, L -Glucose, D-galactose, L-galactose, α-D-mannanose, β-D-mannanose, α-D-mannanose, β-D-mannanose, α-D -Glucopyranose, β-D-glucopyranose, α-D-glucopyranose, β-D-glucopyranose, α-D-frutofuranose, α-D-fructose pyranose, α-D-galactopyranose , Β-D-galactopyranose, α-D-galactofuranose, β-D-galactosamine, glucosamine, sialic acid, galactosamine, N-acetylgalactosamine, N-trifluoroacetyl half Lactosamine, N-propionylgalactosamine, N-butyrylgalactosamine, N-isobutyrylgalactosamine, 2-amino-3-O-[(R)-1-carboxyethyl]-2 -Deoxy-β-D-glucopyranose, 2-deoxy-2-methylamino-L-glucopyranose, 4,6-dideoxy-4-carboxamido-2,3-di-O-methyl -D-mannanose, 2-deoxy-2-sulfoamino-D-glucopyranose, N-glycolyl-α-neuraminic acid, 5-thio-β-D-glucopyranose, 2,3 ,4-Tri-O-acetyl-1-thio-6-O-trityl-α-D-glucopyranoside methyl ester, 4-thio-β-D-galactopyranoside, 3 ,4,6,7-Tetra-O-acetyl-2-deoxy-1,5-dithio-α-D-glucopyranoheptanoside ethyl ester, 2,5-anhydro-D-allosenitrile , Ribose, D-ribose, D-4-thioribose, L-ribose, L-4-thioribose;
    或者,至少一个或每个所述靶向基团为半乳糖或N-乙酰半乳糖胺。Alternatively, at least one or each of the targeting groups is galactose or N-acetylgalactosamine.
  7. 如权利要求1-6中任一项所述的siRNA缀合物,其中,R 10、R 11、R 12、R 13、R 14或R 15独立地为H、甲基或乙基; The siRNA conjugate of any one of claims 1-6, wherein R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are independently H, methyl or ethyl;
    或者R 10、R 11、R 12、R 13、R 14或R 15均为H。 Or R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are all H.
  8. 如权利要求1-7中任一项所述的siRNA缀合物,其中,R 2上同时含有与含氮骨架上的N连接的连接位点和与R 3中的P原子连接的连接位点; The siRNA conjugate according to any one of claims 1-7, wherein R 2 contains both a connection site connected to N on the nitrogen-containing backbone and a connection site connected to the P atom in R 3
    或者R 2上所述与含氮骨架上的N连接的位点与N形成酰胺键,所述与R 3中的P原子连接的位点与P形成磷酸酯键; Or the site on R 2 connected to the N on the nitrogen-containing skeleton forms an amide bond with N, and the site connected to the P atom in R 3 forms a phosphate bond with P;
    或者R 2选自式(B5)、(B6)、(B5')或(B6')所示的基团, Or R 2 is selected from the group represented by formula (B5), (B6), (B5') or (B6'),
    Figure PCTCN2020091489-appb-100009
    Figure PCTCN2020091489-appb-100009
    其中,
    Figure PCTCN2020091489-appb-100010
    表示基团共价键连接的位点;
    among them,
    Figure PCTCN2020091489-appb-100010
    Indicates the site where the group is covalently connected;
    q 2的取值范围可以是1-10的整数。 The value range of q 2 can be an integer of 1-10.
  9. 如权利要求1-8中任一项所述的siRNA缀合物,其中,该缀合物具有式(403)、(404)、(405)、(406)、(407)、(408)、(409)、(410)、(411)、(412)、(413)、(414)、(415)、(416)、(417)、(418)、(419)、(420)、(421)或(422)所示的结构:The siRNA conjugate of any one of claims 1-8, wherein the conjugate has the formula (403), (404), (405), (406), (407), (408), (409), (410), (411), (412), (413), (414), (415), (416), (417), (418), (419), (420), (421 ) Or (422):
    Figure PCTCN2020091489-appb-100011
    Figure PCTCN2020091489-appb-100011
    Figure PCTCN2020091489-appb-100012
    Figure PCTCN2020091489-appb-100012
    Figure PCTCN2020091489-appb-100013
    Figure PCTCN2020091489-appb-100013
    Figure PCTCN2020091489-appb-100014
    Figure PCTCN2020091489-appb-100014
    Figure PCTCN2020091489-appb-100015
    Figure PCTCN2020091489-appb-100015
    Figure PCTCN2020091489-appb-100016
    Figure PCTCN2020091489-appb-100016
    Figure PCTCN2020091489-appb-100017
    Figure PCTCN2020091489-appb-100017
  10. 如权利要求1-9中任一项所述的siRNA缀合物,其中,式A59中的P原子连接到siRNA正义链或反义链的端部,所述端部指所述正义链或反义链中从其一端起算的前4个核苷酸;The siRNA conjugate according to any one of claims 1-9, wherein the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand, and the end refers to the sense strand or antisense strand. The first 4 nucleotides from one end of the sense strand;
    或者式A59中的P原子连接到所述siRNA正义链或反义链的末端;或者式A59中的P原子连接到所述siRNA正义链的3'末端;Or the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand; or the P atom in formula A59 is connected to the 3'end of the siRNA sense strand;
    或者式A59中的P原子通过磷酸二酯键连接至所述siRNA中的核苷酸的2'位、3'位或5'位。Or the P atom in formula A59 is connected to the 2'position, 3'position or 5'position of the nucleotide in the siRNA through a phosphodiester bond.
  11. 如权利要求1所述的siRNA缀合物,其中,i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间不多于1个核苷酸差异;或者ii),所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间不多于1个核苷酸差异;或者,iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间不多于1个核苷酸差异;或者,iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间不多于1个核苷酸差异;或者,v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间不多于1个核苷酸差异;或者vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间不多于1个核苷酸差异。The siRNA conjugate according to claim 1, wherein i) there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1, and/ Or there is no more than one nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 2; or ii), the nucleotide sequence I and SEQ ID NO: 61 There is no more than 1 nucleotide difference between the nucleotide sequences shown, and/or no more than 1 nucleus between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 62 Nucleotide difference; or iii) no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121, and/or the nucleotide sequence II There is no more than one nucleotide difference between the nucleotide sequence shown in SEQ ID NO: 122; or, iv) the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181 There is no more than 1 nucleotide difference between them, and/or no more than 1 nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 182; or, v) There is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241, and/or the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 242 There is no more than 1 nucleotide difference between the nucleotide sequences of, or vi) no more than 1 nucleotide between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301 Difference, and/or no more than 1 nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO:302.
  12. 如权利要求1或11所述的siRNA缀合物,其中,i)所述核苷酸序列II与SEQ ID NO:2 所示的核苷酸序列之间的核苷酸差异包括Z 4位置处的差异,且Z 4选自A、U或C;或者ii)所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间的核苷酸差异包括Z 8位置处的差异,且Z 8选自A、C或G;或者iii)所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间的核苷酸差异包括Z 12位置处的差异,且Z 12选自A、C或G;或者iv)所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间的核苷酸差异包括Z 16位置处的差异,且Z 16选自U、C或G;或者v)所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间的核苷酸差异包括Z 20位置处的差异,且Z 20选自U、C或G;或者vi)所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间的核苷酸差异包括Z 24位置处的差异,且Z 24选自A、C或G。 The siRNA conjugate according to claim 1 or 11, wherein i) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 2 includes the position Z 4 And Z 4 is selected from A, U or C; or ii) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 62 includes the Z 8 position Difference, and Z 8 is selected from A, C or G; or iii) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 122 includes the difference at position Z 12 , And Z 12 is selected from A, C or G; or iv) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 182 includes the difference at the Z 16 position, And Z 16 is selected from U, C or G; or v) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 242 includes the difference at the Z 20 position, and Z 20 is selected from U, C or G; or vi) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 302 includes the difference at position Z 24 , and Z 24 is selected from A, C or G.
  13. 如权利要求12所述的siRNA缀合物,其中,其中Z 3是与Z 4互补的核苷酸;或者Z 7是与Z 8互补的核苷酸;或者Z 11是与Z 12互补的核苷酸;或者Z 15是与Z 16互补的核苷酸;或者Z 19是与Z 20互补的核苷酸;或者Z 23是与Z 24互补的核苷酸。 The siRNA conjugate of claim 12, wherein Z 3 is a nucleotide complementary to Z 4 ; or Z 7 is a nucleotide complementary to Z 8 ; or Z 11 is a nucleus complementary to Z 12 Or Z 15 is a nucleotide complementary to Z 16 ; or Z 19 is a nucleotide complementary to Z 20 ; or Z 23 is a nucleotide complementary to Z 24 .
  14. 如权利要求1-13中任意一项所述的siRNA缀合物,其中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补;所述基本上反向互补是指两个核苷酸序列之间存在不多于3个的碱基错配;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;完全反向互补是指两个核苷酸序列之间没有错配。The siRNA conjugate according to any one of claims 1-13, wherein the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse Complementarity; the substantially reverse complementation refers to the presence of no more than 3 base mismatches between the two nucleotide sequences; the substantially reverse complementarity refers to the presence of no more than 3 base mismatches between the two nucleotide sequences More than 1 base mismatch; complete reverse complementation means that there is no mismatch between two nucleotide sequences.
  15. 如权利要求11-14中任意一项所述的siRNA缀合物,其中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV的长度各自独立地为1-4个核苷酸,所述核苷酸序列III连接在核苷酸序列I的5'末端,核苷酸序列IV连接在核苷酸序列II的3'末端,所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或完全反向互补;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;完全反向互补是指两个核苷酸序列之间没有错配。The siRNA conjugate according to any one of claims 11-14, wherein the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV and a nucleotide sequence III And the length of the nucleotide sequence IV are each independently 1-4 nucleotides, the nucleotide sequence III is connected to the 5'end of the nucleotide sequence I, and the nucleotide sequence IV is connected to the nucleotide sequence At the 3'end of II, the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the substantially reverse complement refers to two nucleotide sequences There is no more than one base mismatch between them; complete reverse complementation means that there is no mismatch between two nucleotide sequences.
  16. 如权利要求15所述的siRNA缀合物,其中,The siRNA conjugate of claim 15, wherein:
    i)所述核苷酸序列I为SEQ ID NO:3所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:4所示的核苷酸序列;且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为C;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CC;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CCC;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为ACCC;或者i) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 3, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 4; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is C; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is CC; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is CCC; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the nucleotide sequence The base composition of sequence III is ACCC; or
    ii)所述核苷酸序列I为SEQ ID NO:63所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:64所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为U;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GU;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GGU;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GGGU;或者ii) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 63, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 64; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is U; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is GU; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is GGU; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotides The base composition of sequence III is GGGU; or
    iii)所述核苷酸序列I为SEQ ID NO:123所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:124所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UAG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUAG;或者iii) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 123, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 124; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is G; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is AG; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is UAG; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotides The base composition of sequence III is AUAG; or
    iv)所述核苷酸序列I为SEQ ID NO:183所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:184所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为C;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AC;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GAC;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AGAC;或者iv) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 183, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 184; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is C; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is AC; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end In the direction of the nucleotide sequence III, the base composition of the nucleotide sequence III is GAC; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotides The base composition of sequence III is AGAC; or
    v)所述核苷酸序列I为SEQ ID NO:243所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:244所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CUG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UCUG;或者v) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 243, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 244; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is G; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is UG; or, the length of the nucleotide sequence III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is CUG; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotide The base composition of sequence III is UCUG; or
    vi)所述核苷酸序列I为SEQ ID NO:303所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:304所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列 III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UAUG。vi) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 303, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 304; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is G; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is UG; or, the length of the nucleotide sequence III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is AUG; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotide sequence The base composition of sequence III is UAUG.
  17. 如权利要求16所述的siRNA缀合物,其中所述核苷酸序列III和IV完全反向互补。The siRNA conjugate of claim 16, wherein the nucleotide sequences III and IV are completely reverse complementary.
  18. 如权利要求1-17中任意一项所述的siRNA缀合物,其中,所述反义链还含有核苷酸序列V,核苷酸序列V的长度为1至3个核苷酸,连接在所述反义链的3'末端,构成反义链的3'垂悬末端;或者所述核苷酸序列V的长度为2个核苷酸;或者所述核苷酸序列V为连续的两个胸腺嘧啶脱氧核糖核苷酸或连续的两个尿嘧啶核糖核苷酸;或者所述核苷酸序列V与靶mRNA相应位置的核苷酸互补。The siRNA conjugate according to any one of claims 1-17, wherein the antisense strand further contains a nucleotide sequence V, and the length of the nucleotide sequence V is 1 to 3 nucleotides. At the 3'end of the antisense strand, constitute the 3'hanging end of the antisense strand; or the length of the nucleotide sequence V is 2 nucleotides; or the nucleotide sequence V is continuous Two thymine deoxyribonucleotides or two consecutive uracil ribonucleotides; or the nucleotide sequence V is complementary to the nucleotide at the corresponding position of the target mRNA.
  19. 如权利要求1-18中任意一项所述的siRNA缀合物,其中,The siRNA conjugate of any one of claims 1-18, wherein:
    所述siRNA的正义链含有如SEQ ID NO:5所示的核苷酸序列,所述反义链含有如SEQ ID NO:6所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:7所示的核苷酸序列,所述反义链含有如SEQ ID NO:8所示的核苷酸序列;The sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 5, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 6; or the sense strand of the siRNA contains The nucleotide sequence shown in SEQ ID NO: 7, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 8;
    或者所述siRNA的正义链含有如SEQ ID NO:65所示的核苷酸序列,所述反义链含有如SEQ ID NO:66所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:67所示的核苷酸序列,所述反义链含有如SEQ ID NO:68所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 65, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 66; or the sense strand of the siRNA contains The nucleotide sequence shown in SEQ ID NO: 67, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 68;
    或者所述siRNA的正义链含有如SEQ ID NO:125所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:126所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:127所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:128所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 125, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 126; or the sense of the siRNA The strand contains the nucleotide sequence shown in SEQ ID NO: 127, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 128;
    或者所述siRNA的正义链含有如SEQ ID NO:185所示的核苷酸序列,所述反义链含有如SEQ ID NO:186所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:187所示的核苷酸序列,所述反义链含有如SEQ ID NO:188所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 185, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 186; or the sense strand of the siRNA contains The nucleotide sequence shown in SEQ ID NO: 187, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 188;
    或者所述siRNA的正义链含有如SEQ ID NO:245所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:246所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:247所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:248所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 245, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 246; or the sense of the siRNA The chain contains the nucleotide sequence shown in SEQ ID NO: 247, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 248;
    或者所述siRNA的正义链含有如SEQ ID NO:305所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:306所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:307所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:308所示的核苷酸序列。Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO:305, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO:306; or the sense of the siRNA The strand contains the nucleotide sequence shown in SEQ ID NO: 307, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 308.
  20. 如权利要求11-19中任意一项所述的siRNA缀合物,其中,所述siRNA具有siPCSKa1、siPCSKa2、siPCSKb1、siPCSKb2、siPCSKc1、siPCSKc2、siPCSKd1、siPCSKd2、siPCSKe1、siPCSKe2、siPCSKf1或siPCSKf2所示的核苷酸序列。The siRNA conjugate according to any one of claims 11-19, wherein the siRNA has siPCSKa1, siPCSKa2, siPCSKb1, siPCSKb2, siPCSKc1, siPCSKc2, siPCSKd1, siPCSKd2, siPCSKe1, siPCSKe2, siPCSKf1 or siPCSKf2. Nucleotide sequence.
  21. 如权利要求1-20中任意一项所述的siRNA缀合物,其中,所述正义链或所述反义链中的至少一个核苷酸为修饰的核苷酸,和/或至少一个磷酸酯基为具有修饰基团的磷酸酯基。The siRNA conjugate according to any one of claims 1-20, wherein at least one nucleotide in the sense strand or the antisense strand is a modified nucleotide, and/or at least one phosphate The ester group is a phosphate group having a modification group.
  22. 如权利要求21所述的siRNA缀合物,其中,所述正义链和所述反义链中的每一个核苷酸独立地为氟代修饰的核苷酸或非氟代修饰的核苷酸;The siRNA conjugate of claim 21, wherein each nucleotide in the sense strand and the antisense strand is independently a fluorinated modified nucleotide or a non-fluorinated modified nucleotide ;
    或者所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,并且,按照5'末端到3'末端的方向,所述核苷酸序列I中至少第7、8、9位的核苷酸为氟代修饰的核苷酸;按照5'末端到3'末端的方向,所述核苷酸序列II中至少第2、6、14、16位的核苷酸为氟代修饰的核苷酸;Or the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and, in the direction from the 5'end to the 3'end, the nucleotide sequence I is at least 7th and 8th The nucleotides at position 9 are fluorinated modified nucleotides; according to the direction from the 5'end to the 3'end, at least the nucleotides at positions 2, 6, 14, and 16 in the nucleotide sequence II are Fluorinated modified nucleotides;
    或者按照5'末端到3'末端的方向,在所述正义链中,所述核苷酸序列I的第7、8、9位或者5、7、8、9位的核苷酸为氟代修饰的核苷酸,所述正义链中其余位置的核苷酸为非氟代修饰的核苷酸;按照5'末端到3'末端的方向,在所述反义链中,所述核苷酸序列II的第2、6、14、16位或者2、6、8、9、14、16位的核苷酸为氟代修饰的核苷酸,所述反义链中其余位置的核苷酸为非氟代修饰的核苷酸。Or according to the direction from the 5'end to the 3'end, in the sense strand, the nucleotides at positions 7, 8, 9 or 5, 7, 8, and 9 of the nucleotide sequence I are fluoro Modified nucleotides, the nucleotides at the remaining positions in the sense strand are non-fluorinated modified nucleotides; in the direction from the 5'end to the 3'end, in the antisense strand, the nucleoside The nucleotides at positions 2, 6, 14, 16 or 2, 6, 8, 9, 14, and 16 of acid sequence II are fluoro-modified nucleotides, and the nucleosides at the remaining positions in the antisense strand Acids are non-fluorinated modified nucleotides.
  23. 如权利要求21或22所述的siRNA缀合物,其中,每一个非氟代修饰的核苷酸独立地选自核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸或核苷酸类似物中的一种;The siRNA conjugate according to claim 21 or 22, wherein each non-fluorinated modified nucleotide is independently selected from the core formed by the substitution of a non-fluorinated group at the 2'-position hydroxyl group of the ribose group of the nucleotide One of nucleotide or nucleotide analogues;
    或者核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸选自2'-烷氧基修饰的核苷酸、2'-经取代的烷氧基修饰的核苷酸、2'-烷基修饰的核苷酸、2'-经取代的烷基修饰的核苷酸、2'-氨基修饰的核苷酸、2'-经取代的氨基修饰的核苷酸、2'-脱氧核苷酸中的一种;核苷酸类似物选自异核苷酸、LNA、ENA、cET、UNA和GNA中的一种;Or the nucleotide formed by replacing the hydroxyl group at the 2'position of the ribose group of the nucleotide with a non-fluorine group is selected from the group consisting of 2'-alkoxy-modified nucleotides and 2'-substituted alkoxy-modified nucleosides Acid, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-amino modified nucleotides, 2'-substituted amino modified nucleotides, One of 2'-deoxynucleotides; the nucleotide analog is selected from one of heteronucleotides, LNA, ENA, cET, UNA and GNA;
    或者每一个非氟代修饰的核苷酸均为甲氧基修饰的核苷酸,所述甲氧基修饰的核苷酸指核糖基的2'-羟基被甲氧基取代而形成的核苷酸。Or each non-fluorinated modified nucleotide is a methoxy modified nucleotide, and the methoxy modified nucleotide refers to a nucleoside formed by replacing the 2'-hydroxyl group of the ribose group with a methoxy group acid.
  24. 如权利要求21-23中任意一项所述的siRNA缀合物,其中,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第5、7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述 siRNA的反义链中核苷酸序列II的第2、6、8、9、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸;The siRNA conjugate according to any one of claims 21-23, wherein, in the direction from the 5'end to the 3'end, the 5th, 7th, 8th, and 8th of the nucleotide sequence I in the sense strand of the siRNA The nucleotides at position 9 are fluoro-modified nucleotides, and the nucleotides at the remaining positions in the sense strand of the siRNA are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, The nucleotides at positions 2, 6, 8, 9, 14 and 16 of nucleotide sequence II in the antisense strand of the siRNA are fluorinated modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of siRNA are Methoxy modified nucleotides;
    或者,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第5、7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸;Or, according to the direction from the 5'end to the 3'end, the 5th, 7th, 8th and 9th nucleotides of the nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense The nucleotides at the remaining positions of the chain are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, and 14th nucleotide sequence II in the antisense strand of the siRNA The nucleotides at and 16 are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of siRNA are methoxy-modified nucleotides;
    或者,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸。Or, according to the direction from the 5'end to the 3'end, the nucleotides at positions 7, 8 and 9 of nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense strand of the siRNA The nucleotides at the remaining positions are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, 14th, and 16th nucleotide sequence II in the antisense strand of the siRNA The nucleotides at the position are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of the siRNA are methoxy-modified nucleotides.
  25. 如权利要求1-24中任意一项所述的siRNA缀合物,其中,所述siRNA为siPCSKa1-M1、siPCSKa2-M1、siPCSKa1-M2、siPCSKa2-M2、siPCSKa1-M3、siPCSKa2-M3、siPCSKb1-M1、siPCSKb2-M1、siPCSKb1-M2、siPCSKb2-M2、siPCSKb1-M3、siPCSKb2-M3、siPCSKc1-M1、siPCSKc2-M1、siPCSKc1-M2、siPCSKc2-M2、siPCSKc1-M3、siPCSKc2-M3、siPCSKd1-M1、siPCSKd2-M1、siPCSKd1-M2、siPCSKd2-M2、siPCSKd1-M3、siPCSKd2-M3、siPCSKe1-M1、siPCSKe2-M1、siPCSKe1-M2、siPCSKe2-M2、siPCSKe1-M3、siPCSKe2-M3、siPCSKf1-M1、siPCSKf2-M1、siPCSKf1-M2、siPCSKf2-M2、siPCSKf1-M3或siPCSKf2-M3中的任意一种。The siRNA conjugate according to any one of claims 1-24, wherein the siRNA is siPCSKa1-M1, siPCSKa2-M1, siPCSKa1-M2, siPCSKa2-M2, siPCSKa1-M3, siPCSKa2-M3, siPCSKb1- M1, siPCSKb2-M1, siPCSKb1-M2, siPCSKb2-M2, siPCSKb1-M3, siPCSKb2-M3, siPCSKc1-M1, siPCSKc2-M1, siPCSKc1-M2, siPCSKc2-M2, siPCSKc1-M3, siPCSKc2-M3, siPCSKd1-M1 siPCSKd2-M1, siPCSKd1-M2, siPCSKd2-M2, siPCSKd1-M3, siPCSKd2-M3, siPCSKe1-M1, siPCSKe2-M1, siPCSKe1-M2, siPCSKe2-M2, siPCSKe1-M3, siPCSKe2-M3, siPCSKf1-M1, siPCSKf2- Any one of M1, siPCSKf1-M2, siPCSKf2-M2, siPCSKf1-M3, or siPCSKf2-M3.
  26. 如权利要求21所述的siRNA缀合物,其中,所述具有修饰基团的磷酸酯基为磷酸酯基中的磷酸二酯键中的至少一个氧原子被硫原子取代而形成的硫代磷酸酯基;或者所述具有修饰基团的磷酸酯基为具有如式(1)所示结构的硫代磷酸酯基:The siRNA conjugate according to claim 21, wherein the phosphate group having a modification group is a phosphorothioate formed by replacing at least one oxygen atom in the phosphodiester bond of the phosphate group with a sulfur atom Ester group; or the phosphorothioate group having a modified group is a phosphorothioate group having the structure shown in formula (1):
    Figure PCTCN2020091489-appb-100018
    Figure PCTCN2020091489-appb-100018
  27. 如权利要求26所述的siRNA缀合物,其中,所述siRNA中,硫代磷酸酯基连接存在于由以下位置组成的组中的至少一处:The siRNA conjugate according to claim 26, wherein, in the siRNA, the phosphorothioate group linkage exists in at least one of the following positions:
    所述正义链的5'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 5'end of the sense strand;
    所述正义链的5'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 5'end of the sense strand;
    所述正义链的3'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 3'end of the sense strand;
    所述正义链的3'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 3'end of the sense strand;
    所述反义链的5'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 5'end of the antisense strand;
    所述反义链的5'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 5'end of the antisense strand;
    所述反义链的3'末端第1个核苷酸和第2个核苷酸之间;以及Between the first nucleotide and the second nucleotide of the 3'end of the antisense strand; and
    所述反义链的3'末端第2个核苷酸和第3个核苷酸之间。Between the second nucleotide and the third nucleotide of the 3'end of the antisense strand.
  28. 如权利要求1-27中任意一项所述的siRNA缀合物,其中,所述siRNA为siPCSKa1-M1S、siPCSKa2-M1S、siPCSKa1-M2S、siPCSKa2-M2S、siPCSKa1-M3S、siPCSKa2-M3S、siPCSKb1-M1S、siPCSKb2-M1S、siPCSKb1-M2S、siPCSKb2-M2S、siPCSKb1-M3S、siPCSKb2-M3S、siPCSKc1-M1S、siPCSKc2-M1S、siPCSKc1-M2S、siPCSKc2-M2S、siPCSKc1-M3S、siPCSKc2-M3S、siPCSKd1-M1S、siPCSKd2-M1S、siPCSKd1-M2S、siPCSKd2-M2S、siPCSKd1-M3S、siPCSKd2-M3S、siPCSKe1-M1S、siPCSKe2-M1S、siPCSKe1-M2S、siPCSKe2-M2S、siPCSKe1-M3S、siPCSKe2-M3S、siPCSKf1-M1S、siPCSKf2-M1S、siPCSKf1-M2S、siPCSKf2-M2S、siPCSKf1-M3S或siPCSKf2-M3S中的任意一种。The siRNA conjugate according to any one of claims 1-27, wherein the siRNA is siPCSKa1-M1S, siPCSKa2-M1S, siPCSKa1-M2S, siPCSKa2-M2S, siPCSKa1-M3S, siPCSKa2-M3S, siPCSKb1- M1S, siPCSKb2-M1S, siPCSKb1-M2S, siPCSKb2-M2S, siPCSKb1-M3S, siPCSKb2-M3S, siPCSKc1-M1S, siPCSKc2-M1S, siPCSKc1-M2S, siPCSKc2-M2S, siPCSKc1-M3S, siPCSK1 siPCSKd2-M1S, siPCSKd1-M2S, siPCSKd2-M2S, siPCSKd1-M3S, siPCSKd2-M3S, siPCSKe1-M1S, siPCSKe2-M1S, siPCSKe1-M2S, siPCSKe2-M2S, siPCSKe1-M3S, siPCSK2, siPCf Any one of M1S, siPCSKf1-M2S, siPCSKf2-M2S, siPCSKf1-M3S or siPCSKf2-M3S.
  29. 如权利要求1-28中任意一项所述的siRNA缀合物,其中,所述siRNA反义链的5'末端核苷酸为5'-磷酸核苷酸或5'-磷酸类似物修饰的核苷酸;The siRNA conjugate according to any one of claims 1-28, wherein the 5'terminal nucleotide of the siRNA antisense strand is modified with 5'-phosphate nucleotides or 5'-phosphate analogs Nucleotide
    或者所述5'-磷酸核苷酸为具有如式(2)所示结构的核苷酸,所述5'-磷酸类似物修饰的核苷酸选自结构如式(3)-式(6)中任意一个所示的核苷酸,Or the 5'-phosphate nucleotides are nucleotides having the structure shown in formula (2), and the nucleotides modified by the 5'-phosphate analogues are selected from the group consisting of structures such as formula (3)-formula (6). ) In any one of the nucleotides,
    Figure PCTCN2020091489-appb-100019
    Figure PCTCN2020091489-appb-100019
    其中,R选自H、OH、甲氧基或氟;Base表示碱基,选自A、U、C、G或T。Wherein, R is selected from H, OH, methoxy or fluorine; Base represents a base, selected from A, U, C, G or T.
  30. 如权利要求1-29中任意一项所述的siRNA缀合物,其中,所述siRNA为siPCSKa1-M1P1、 siPCSKa1-M2P1、siPCSKa1-M3P1、siPCSKa2-M1P1、siPCSKa2-M2P1、siPCSKa2-M3P1、siPCSKa1-M1SP1、siPCSKa1-M2SP1、siPCSKa1-M3SP1、siPCSKa2-M1SP1、siPCSKa2-M2SP1、siPCSKa2-M3SP1、siPCSKb1-M1P1、siPCSKb1-M2P1、siPCSKb1-M3P1、siPCSKb2-M1P1、siPCSKb2-M2P1、siPCSKb2-M3P1、siPCSKb1-M1SP1、siPCSKb1-M2SP1、siPCSKb1-M3SP1、siPCSKb2-M1SP1、siPCSKb2-M2SP1、siPCSKb2-M3SP1、siPCSKc1-M1P1、siPCSKc1-M2P1、siPCSKc1-M3P1、siPCSKc2-M1P1、siPCSKc2-M2P1、siPCSKc2-M3P1、siPCSKc1-M1SP1、siPCSKc1-M2SP1、siPCSKc1-M3SP1、siPCSKc2-M1SP1、siPCSKc2-M2SP1、siPCSKc2-M3SP1、siPCSKd1-M1P1、siPCSKd1-M2P1、siPCSKd1-M3P1、siPCSKd2-M1P1、siPCSKd2-M2P1、siPCSKd2-M3P1、siPCSKd1-M1SP1、siPCSKd1-M2SP1、siPCSKd1-M3SP1、siPCSKd2-M1SP1、siPCSKd2-M2SP1、siPCSKd2-M3SP1、siPCSKe1-M1P1、siPCSKe1-M2P1、siPCSKe1-M3P1、siPCSKe2-M1P1、siPCSKe2-M2P1、siPCSKe2-M3P1、siPCSKe1-M1SP1、siPCSKe1-M2SP1、siPCSKe1-M3SP1、siPCSKe2-M1SP1、siPCSKe2-M2SP1、siPCSKe2-M3SP1、siPCSKf1-M1P1、siPCSKf1-M2P1、siPCSKf1-M3P1、siPCSKf2-M1P1、siPCSKf2-M2P1、siPCSKf2-M3P1、siPCSKf1-M1SP1、siPCSKf1-M2SP1、siPCSKf1-M3SP1、siPCSKf2-M1SP1、siPCSKf2-M2SP1或siPCSKf2-M3SP1中的任意一种。The siRNA conjugate according to any one of claims 1-29, wherein the siRNA is siPCSKa1-M1P1, siPCSKa1-M2P1, siPCSKa1-M3P1, siPCSKa2-M1P1, siPCSKa2-M2P1, siPCSKa2-M3P1, siPCSKa1- M1SP1, siPCSKa1-M2SP1, siPCSKa1-M3SP1, siPCSKa2-M1SP1, siPCSKa2-M2SP1, siPCSKa2-M3SP1, siPCSKb1-M1P1, siPCSKb1-M2P1, siPCSKb1-M3P1, siPCSKb2-M1P1, siPCSKb2-M2P1, siPCSKb1 siPCSKb1-M2SP1, siPCSKb1-M3SP1, siPCSKb2-M1SP1, siPCSKb2-M2SP1, siPCSKb2-M3SP1, siPCSKc1-M1P1, siPCSKc1-M2P1, siPCSKc1-M3P1, siPCSKc2-M1P1, siPCSKc2-M2P1, siPCSKc2-M2P1 M2SP1, siPCSKc1-M3SP1, siPCSKc2-M1SP1, siPCSKc2-M2SP1, siPCSKc2-M3SP1, siPCSKd1-M1P1, siPCSKd1-M2P1, siPCSKd1-M3P1, siPCSKd2-M1P1, siPCSKd2-M2P1, siPCSKd2-M3SK1, siPCSKd1-M2P1 siPCSKd1-M3SP1, siPCSKd2-M1SP1, siPCSKd2-M2SP1, siPCSKd2-M3SP1, siPCSKe1-M1P1, siPCSKe1-M2P1, siPCSKe1-M3P1, siPCSKe2-M1P1, siPCSKe2-M2P1, siPCSKe2-M3e1-M2P1, siPCSKe2-M3e1-M2SP1 M3SP1, siPCSKe2-M1SP1, siPCSKe2-M2SP1, siPCSKe2-M3SP1, siPCSKf1-M1P1, siPCSKf1-M2P1, siPCSKf1-M3P1, siPCSKf2-M1P1, siPCSKf2-M2P1, siPCSKf2-M3P1, siPCSKf1 -Any one of M1SP1, siPCSKf1-M2SP1, siPCSKf1-M3SP1, siPCSKf2-M1SP1, siPCSKf2-M2SP1 or siPCSKf2-M3SP1.
  31. 一种siRNA,所述siRNA含有正义链和反义链,所述正义链和所述反义链中的每一个核苷酸独立地为氟代修饰的核苷酸或非氟代修饰的核苷酸;所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,并且,按照5'末端到3'末端的方向,在所述正义链中,所述核苷酸序列I的第7、8、9位的核苷酸为氟代修饰的核苷酸,所述正义链中其余位置的核苷酸为非氟代修饰的核苷酸;按照5'末端到3'末端的方向,在所述反义链中,所述核苷酸序列II的第2、6、14、16位的核苷酸为氟代修饰的核苷酸,所述反义链中其余位置的核苷酸为非氟代修饰的核苷酸,并且,A siRNA comprising a sense strand and an anti-sense strand, each nucleotide in the sense strand and the anti-sense strand is independently a fluorinated modified nucleotide or a non-fluorinated modified nucleoside Acid; the sense strand contains a nucleotide sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double Chain region, the fluoro-modified nucleotides are located in nucleotide sequence I and nucleotide sequence II, and, in the direction from the 5'end to the 3'end, in the sense strand, the nucleoside The nucleotides at positions 7, 8, and 9 of acid sequence I are fluorinated modified nucleotides, and the nucleotides at the remaining positions in the sense strand are non-fluorinated modified nucleotides; according to the 5'end to In the direction of the 3'end, in the antisense strand, the nucleotides at positions 2, 6, 14, and 16 of the nucleotide sequence II are fluorinated modified nucleotides, and in the antisense strand The nucleotides at the remaining positions are non-fluorinated modified nucleotides, and,
    i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 1的核苷酸Z 3,所述核苷酸序列II中包含位置对应于Z 2的核苷酸Z 4,所述Z 4是所述反义链5'末端的第一个核苷酸;或者, i) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 1 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 2 The nucleotide sequences shown are equal in length and have no more than 3 nucleotide differences. The nucleotide sequence I includes the nucleotide Z 3 whose position corresponds to Z 1 , and the nucleotide sequence II The inclusion position corresponds to the nucleotide Z 4 of Z 2 , where Z 4 is the first nucleotide at the 5'end of the antisense strand; or,
    ii)所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 5的核苷酸Z 7,所述核苷酸序列II中包含位置对应于Z 6的核苷酸Z 8,所述Z 8是所述反义链5'末端的第一个核苷酸;或者, ii) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 62 The nucleotide sequences shown are equal in length and have no more than 3 nucleotide differences. The nucleotide sequence I includes the nucleotide Z 7 whose position corresponds to Z 5 , and the nucleotide sequence II The inclusion position corresponds to the nucleotide Z 8 of Z 6 , where Z 8 is the first nucleotide at the 5'end of the antisense strand; or,
    iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列长度相等,且不多于3个核苷酸差异所述核苷酸序列I中包含位置对应于Z 9的核苷酸Z 11,所述核苷酸序列II中包含位置对应于Z 10的核苷酸Z 12,所述Z 12是所述反义链5'末端的第一个核苷酸;或者, iii) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 122 The nucleotide sequences shown are equal in length and have no more than 3 nucleotide differences. The nucleotide sequence I includes the nucleotide Z 11 whose position corresponds to Z 9 and the nucleotide sequence II includes a nucleotide position corresponding to the Z 12 Z 10, Z 12 is the antisense strand of the 5 'end of the first nucleotide; or
    iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 13的核苷酸Z 15,所述核苷酸序列II中包含位置对应于Z 14的核苷酸Z 16,所述Z 16是所述反义链5'末端的第一个核苷酸;或者, iv) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181 are equal in length, and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 182 The nucleotide sequences shown are equal in length and have no more than 3 nucleotide differences. The nucleotide sequence I includes the nucleotide Z 15 whose position corresponds to Z 13 , and the nucleotide sequence II The inclusion position corresponds to the nucleotide Z 16 of Z 14 , where Z 16 is the first nucleotide at the 5'end of the antisense strand; or,
    v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 17的核苷酸Z 19,所述核苷酸序列II中包含位置对应于Z 18的核苷酸Z 20,所述Z 20是所述反义链5'末端的第一个核苷酸;或者, v) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 242 The nucleotide sequences shown are equal in length and have no more than 3 nucleotide differences. The nucleotide sequence I includes the nucleotide Z 19 at the position corresponding to Z 17 , and the nucleotide sequence II The inclusion position corresponds to the nucleotide Z 20 of Z 18 , said Z 20 being the first nucleotide at the 5'end of the antisense strand; or,
    vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 21的核苷酸Z 23,所述核苷酸序列II中包含位置对应于Z 22的核苷酸Z 24,所述Z 24是所述反义链5'末端的第一个核苷酸。 vi) The nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 302 The nucleotide sequences shown are equal in length and have no more than 3 nucleotide differences. The nucleotide sequence I includes the nucleotide Z 23 corresponding to the position Z 21 , and the nucleotide sequence II comprising a position corresponding to nucleotide Z 22 Z 24, Z 24 is the antisense strand of the 5 'end of the first nucleotide.
  32. 如权利要求31所述的siRNA,其中,每一个非氟代修饰的核苷酸独立地选自核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸或核苷酸类似物中的一种。The siRNA of claim 31, wherein each non-fluorinated modified nucleotide is independently selected from nucleotides or nucleosides formed by substituting a non-fluorinated group at the 2'-position hydroxyl group of the ribose group of the nucleotide One of the acid analogs.
  33. 如权利要求32所述的siRNA,其中,核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸选自2'-烷氧基修饰的核苷酸、2'-经取代的烷氧基修饰的核苷酸、2'-烷基修饰的核苷酸、2'-经取代的烷基修饰的核苷酸、2'-氨基修饰的核苷酸、2'-经取代的氨基修饰的核苷酸、2'-脱氧核苷酸中的一种;核苷酸类似物选自异核苷酸、LNA、ENA、cET、UNA和GNA中的一种。The siRNA according to claim 32, wherein the nucleotide formed by substituting the hydroxyl group at the 2'position of the ribose group of the nucleotide with a non-fluorine group is selected from the group consisting of 2'-alkoxy modified nucleotides, 2'- Substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-amino modified nucleotides, 2'- One of substituted amino-modified nucleotides and 2'-deoxynucleotides; the nucleotide analog is selected from one of heteronucleotides, LNA, ENA, cET, UNA and GNA.
  34. 如权利要求31-33中任意一项所述的siRNA,其中,每一个非氟代修饰的核苷酸均为甲氧基修饰的核苷酸,所述甲氧基修饰的核苷酸指核糖基的2'-羟基被甲氧基取代而形成的核苷酸。The siRNA according to any one of claims 31-33, wherein each non-fluorinated modified nucleotide is a methoxy modified nucleotide, and the methoxy modified nucleotide refers to ribose A nucleotide in which the 2'-hydroxy group of the group is replaced by a methoxy group.
  35. 如权利要求31-34中任意一项所述的siRNA,其中,i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间不多于1个核苷酸差异;或者ii),所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间不多于1个核苷酸差异;或者,iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间不多于1个核苷酸差异;或者,iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间不多于1个核苷酸差异;或者,v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间不多于1个核苷酸差异;或者vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间不多于1个核苷酸差异。The siRNA according to any one of claims 31-34, wherein i) there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1 , And/or no more than 1 nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 2; or ii), the nucleotide sequence I and SEQ ID There is no more than 1 nucleotide difference between the nucleotide sequence shown in NO: 61, and/or the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 62 are not more than 1 nucleotide difference; or, iii) no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121, and/or the nucleoside There is no more than one nucleotide difference between the acid sequence II and the nucleotide sequence shown in SEQ ID NO: 122; or, iv) the nucleotide sequence I and the nucleoside shown in SEQ ID NO: 181 No more than 1 nucleotide difference between the acid sequences, and/or no more than 1 nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 182; or , V) There is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241, and/or the nucleotide sequence II and SEQ ID NO: There is no more than 1 nucleotide difference between the nucleotide sequence shown in 242; or vi) there is no more than 1 difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301 Nucleotide difference, and/or no more than 1 nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO:302.
  36. 如权利要求31-35中任意一项所述的siRNA,其中,i)所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间的核苷酸差异包括Z 4位置处的差异,且Z 4选自A、U或C;或者ii)所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间的核苷酸差异包括Z 8位置处的差异,且Z 8选自A、C或G;或者iii)所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间的核苷酸差异包括Z 12位置处的差异,且Z 12选自A、C或G;或者iv)所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间的核苷酸差异包括Z 16位置处的差异,且Z 16选自U、C或G;或者v)所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间的核苷酸差异包括Z 20位置处的差异,且Z 20选自U、C或G;或者vi)所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间的核苷酸差异包括Z 24位置处的差异,且Z 24选自A、C或G。 The siRNA according to any one of claims 31-35, wherein i) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 2 includes the Z 4 position And Z 4 is selected from A, U or C; or ii) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 62 includes the Z 8 position And Z 8 is selected from A, C or G; or iii) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 122 includes the Z 12 position Difference, and Z 12 is selected from A, C or G; or iv) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 182 includes the difference at position Z 16 , And Z 16 is selected from U, C or G; or v) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 242 includes the difference at the Z 20 position, And Z 20 is selected from U, C or G; or vi) the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 302 includes the difference at the Z 24 position, and Z 24 is selected from A, C or G.
  37. 如权利要求36所述的siRNA,其中,其中Z 3是与Z 4互补的核苷酸;或者Z 7是与Z 8互补的核苷酸;或者Z 11是与Z 12互补的核苷酸;或者Z 15是与Z 16互补的核苷酸;或者Z 19是与Z 20互补的核苷酸;或者Z 23是与Z 24互补的核苷酸。 The siRNA of claim 36, wherein Z 3 is a nucleotide complementary to Z 4 ; or Z 7 is a nucleotide complementary to Z 8 ; or Z 11 is a nucleotide complementary to Z 12 ; Either Z 15 is a nucleotide complementary to Z 16 ; or Z 19 is a nucleotide complementary to Z 20 ; or Z 23 is a nucleotide complementary to Z 24 .
  38. 如权利要求31-37中任意一项所述的siRNA,其中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补;所述基本上反向互补是指两个核苷酸序列之间存在不多于3个的碱基错配;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;完全反向互补是指两个核苷酸序列之间没有错配。The siRNA according to any one of claims 31-37, wherein the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary; The "substantially reverse complementarity" means that there are no more than 3 base mismatches between two nucleotide sequences; the "substantially reverse complementarity" refers to the presence of no more than 1 base mismatch between the two nucleotide sequences. A base mismatch; complete reverse complementation means that there is no mismatch between two nucleotide sequences.
  39. 如权利要求31-38中任意一项所述的siRNA,其中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV的长度各自独立地为1-4个核苷酸,所述核苷酸序列III连接在核苷酸序列I的5'末端,核苷酸序列IV连接在核苷酸序列II的3'末端,所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或完全反向互补;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;完全反向互补是指两个核苷酸序列之间没有错配。The siRNA according to any one of claims 31-38, wherein the sense strand further contains a nucleotide sequence III, and the antisense strand further contains a nucleotide sequence IV, a nucleotide sequence III and a nucleoside The length of the acid sequence IV is each independently 1-4 nucleotides, the nucleotide sequence III is connected to the 5'end of the nucleotide sequence I, and the nucleotide sequence IV is connected to the 3 of the nucleotide sequence II. 'At the end, the nucleotide sequence III and the nucleotide sequence IV are equal in length and are substantially reverse complementary or completely reverse complementary; the substantially reverse complement refers to the existence between two nucleotide sequences No more than 1 base mismatch; complete reverse complementation means that there is no mismatch between two nucleotide sequences.
  40. 如权利要求31-39中任意一项所述的siRNA,其中,The siRNA of any one of claims 31-39, wherein:
    i)所述核苷酸序列I为SEQ ID NO:3所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:4所示的核苷酸序列;且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为C;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CC;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CCC;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为ACCC;或者i) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 3, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 4; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is C; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is CC; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is CCC; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the nucleotide sequence The base composition of sequence III is ACCC; or
    ii)所述核苷酸序列I为SEQ ID NO:63所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:64所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为U;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GU;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GGU;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GGGU;或者ii) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 63, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 64; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is U; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is GU; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is GGU; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotides The base composition of sequence III is GGGU; or
    iii)所述核苷酸序列I为SEQ ID NO:123所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:124所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UAG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUAG;或者iii) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 123, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 124; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is G; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is AG; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is UAG; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotides The base composition of sequence III is AUAG; or
    iv)所述核苷酸序列I为SEQ ID NO:183所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:184所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为C;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AC;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GAC;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AGAC;或者iv) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 183, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 184; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is C; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is AC; or, the lengths of the nucleotide sequences III and IV are both 3 nucleotides, according to the 5'end to the 3'end In the direction of the nucleotide sequence III, the base composition of the nucleotide sequence III is GAC; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotides The base composition of sequence III is AGAC; or
    v)所述核苷酸序列I为SEQ ID NO:243所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:244所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CUG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UCUG;或者v) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 243, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 244; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is G; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is UG; or, the length of the nucleotide sequence III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is CUG; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotide The base composition of sequence III is UCUG; or
    vi)所述核苷酸序列I为SEQ ID NO:303所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:304所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UAUG。vi) The nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 303, and the nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 304; and the nucleotide sequence The lengths of the sequences III and IV are both 1 nucleotide, and the base of the nucleotide sequence III is G; or the lengths of the nucleotide sequences III and IV are both 2 nucleotides, according to 5 From the'end to the 3'end, the base composition of the nucleotide sequence III is UG; or, the length of the nucleotide sequence III and IV are both 3 nucleotides, according to the 5'end to the 3'end The base composition of the nucleotide sequence III is AUG; or, the length of the nucleotide sequence III and IV are both 4 nucleotides, in the direction from the 5'end to the 3'end, the nucleotide sequence The base composition of sequence III is UAUG.
  41. 如权利要求40所述的siRNA,其中所述核苷酸序列III和IV完全反向互补。The siRNA of claim 40, wherein the nucleotide sequences III and IV are completely reverse complementary.
  42. 如权利要求31-41中任意一项所述的siRNA,其中,所述反义链还含有核苷酸序列V,核苷酸序列V的长度为1至3个核苷酸,连接在所述反义链的3'末端,构成反义链的3'垂悬末端;或者所述核苷酸序列V的长度为2个核苷酸;或者所述核苷酸序列V为连续的两个胸腺嘧啶脱氧核糖核苷酸或连续的两个尿嘧啶核糖核苷酸;或者所述核苷酸序列V与靶mRNA相应位置的核苷酸互补。The siRNA according to any one of claims 31-41, wherein the antisense strand further contains a nucleotide sequence V, the length of the nucleotide sequence V is 1 to 3 nucleotides, and is connected to the The 3'end of the antisense strand constitutes the 3'hanging end of the antisense strand; or the length of the nucleotide sequence V is 2 nucleotides; or the nucleotide sequence V is two consecutive thymus Pyrimidine deoxyribonucleotides or two consecutive uracil ribonucleotides; or the nucleotide sequence V is complementary to the nucleotide at the corresponding position of the target mRNA.
  43. 如权利要求31-42中任意一项所述的siRNA,其中,The siRNA of any one of claims 31-42, wherein:
    所述siRNA的正义链含有如SEQ ID NO:5所示的核苷酸序列,所述反义链含有如SEQ ID NO:6所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:7所示的核苷酸序列,所述反义链含有如SEQ ID NO:8所示的核苷酸序列;The sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 5, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 6; or the sense strand of the siRNA contains The nucleotide sequence shown in SEQ ID NO: 7, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 8;
    或者所述siRNA的正义链含有如SEQ ID NO:65所示的核苷酸序列,所述反义链含有如SEQ ID NO:66所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:67所示的核苷酸序列,所述反义链含有如SEQ ID NO:68所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 65, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 66; or the sense strand of the siRNA contains The nucleotide sequence shown in SEQ ID NO: 67, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 68;
    或者所述siRNA的正义链含有如SEQ ID NO:125所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:126所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:127所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:128所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 125, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 126; or the sense of the siRNA The strand contains the nucleotide sequence shown in SEQ ID NO: 127, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 128;
    或者所述siRNA的正义链含有如SEQ ID NO:185所示的核苷酸序列,所述反义链含有如SEQ ID NO:186所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:187所示的核苷酸序列,所述反义链含有如SEQ ID NO:188所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 185, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 186; or the sense strand of the siRNA contains The nucleotide sequence shown in SEQ ID NO: 187, and the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 188;
    或者所述siRNA的正义链含有如SEQ ID NO:245所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:246所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:247所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:248所示的核苷酸序列;Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 245, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 246; or the sense of the siRNA The chain contains the nucleotide sequence shown in SEQ ID NO: 247, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 248;
    或者所述siRNA的正义链含有如SEQ ID NO:305所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:306所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:307所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:308所示的核苷酸序列。Or the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO:305, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO:306; or the sense of the siRNA The strand contains the nucleotide sequence shown in SEQ ID NO: 307, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 308.
  44. 如权利要求31-43中任意一项所述的siRNA,其中,所述siRNA具有siPCSKa1、siPCSKa2、siPCSKb1、siPCSKb2、siPCSKc1、siPCSKc2、siPCSKd1、siPCSKd2、siPCSKe1、siPCSKe2、siPCSKf1或siPCSKf2所示的核苷酸序列。The siRNA according to any one of claims 31-43, wherein the siRNA has nucleotides represented by siPCSKa1, siPCSKa2, siPCSKb1, siPCSKb2, siPCSKc1, siPCSKc2, siPCSKd1, siPCSKd2, siPCSKe1, siPCSKe2, siPCSKf1, or siPCSKf2 sequence.
  45. 如权利要求31-44中任意一项所述的siRNA,其中,其中,所述siRNA为siPCSKa1-M1、siPCSKa2-M1、siPCSKb1-M1、siPCSKb2-M1、siPCSKc1-M1、siPCSKc2-M1、siPCSKd1-M1、siPCSKd2-M1、siPCSKe1-M1、siPCSKe2-M1、siPCSKf1-M1或siPCSKf2-M1中的任意一种。The siRNA according to any one of claims 31-44, wherein the siRNA is siPCSKa1-M1, siPCSKa2-M1, siPCSKb1-M1, siPCSKb2-M1, siPCSKc1-M1, siPCSKc2-M1, siPCSKd1-M1 , SiPCSKd2-M1, siPCSKe1-M1, siPCSKe2-M1, siPCSKf1-M1 or siPCSKf2-M1.
  46. 如权利要求31-45中任意一项所述的siRNA,其中,所述正义链或所述反义链中的至少一个磷酸酯基为具有修饰基团的磷酸酯基。The siRNA according to any one of claims 31-45, wherein at least one phosphate group in the sense strand or the antisense strand is a phosphate group with a modification group.
  47. 如权利要求46所述的siRNA,其中,所述具有修饰基团的磷酸酯基为磷酸酯基中的磷酸二酯键中的至少一个氧原子被硫原子取代而形成的硫代磷酸酯基;或者所述具有修饰基团的磷酸酯基为具有如式(1)所示结构的硫代磷酸酯基:The siRNA according to claim 46, wherein the phosphate group with a modification group is a phosphorothioate group formed by replacing at least one oxygen atom in the phosphodiester bond in the phosphate group with a sulfur atom; Or the phosphate group with a modified group is a phosphorothioate group having a structure as shown in formula (1):
    Figure PCTCN2020091489-appb-100020
    Figure PCTCN2020091489-appb-100020
  48. 如权利要求47所述的siRNA,其中,所述siRNA中,硫代磷酸酯基连接存在于由以下位置组成的组中的至少一处:The siRNA according to claim 47, wherein in the siRNA, the phosphorothioate group linkage exists in at least one of the following positions:
    所述正义链的5'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 5'end of the sense strand;
    所述正义链的5'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 5'end of the sense strand;
    所述正义链的3'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 3'end of the sense strand;
    所述正义链的3'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 3'end of the sense strand;
    所述反义链的5'末端第1个核苷酸和第2个核苷酸之间;Between the first nucleotide and the second nucleotide of the 5'end of the antisense strand;
    所述反义链的5'末端第2个核苷酸和第3个核苷酸之间;Between the second nucleotide and the third nucleotide of the 5'end of the antisense strand;
    所述反义链的3'末端第1个核苷酸和第2个核苷酸之间;以及Between the first nucleotide and the second nucleotide of the 3'end of the antisense strand; and
    所述反义链的3'末端第2个核苷酸和第3个核苷酸之间。Between the second nucleotide and the third nucleotide of the 3'end of the antisense strand.
  49. 如权利要求31-48中任意一项所述的siRNA,其中,所述siRNA为siPCSKa1-M1S、siPCSKa2-M1S、siPCSKb1-M1S、siPCSKb2-M1S、siPCSKc1-M1S、siPCSKc2-M1S、siPCSKd1-M1S、siPCSKd2-M1S、siPCSKe1-M1S、siPCSKe2-M1S、siPCSKf1-M1S或siPCSKf2-M1S中的任意一种。The siRNA of any one of claims 31-48, wherein the siRNA is siPCSKa1-M1S, siPCSKa2-M1S, siPCSKb1-M1S, siPCSKb2-M1S, siPCSKc1-M1S, siPCSKc2-M1S, siPCSKd1-M1S, siPCSKd2 -Any one of M1S, siPCSKe1-M1S, siPCSKe2-M1S, siPCSKf1-M1S or siPCSKf2-M1S.
  50. 如权利要求31-49中任意一项所述的siRNA,其中,所述siRNA反义链的5'末端核苷酸为5'-磷酸核苷酸或5'-磷酸类似物修饰的核苷酸;The siRNA according to any one of claims 31-49, wherein the 5'terminal nucleotide of the antisense strand of the siRNA is a 5'-phosphate nucleotide or a 5'-phosphate analog modified nucleotide ;
    或者所述5'-磷酸核苷酸为具有如式(2)所示结构的核苷酸,所述5'-磷酸类似物修饰的核苷酸选自结构如式(3)-式(6)中任意一个所示的核苷酸,Or the 5'-phosphate nucleotides are nucleotides having the structure shown in formula (2), and the nucleotides modified by the 5'-phosphate analogues are selected from the group consisting of structures such as formula (3)-formula (6). ) In any one of the nucleotides,
    Figure PCTCN2020091489-appb-100021
    Figure PCTCN2020091489-appb-100021
    其中,R选自H、OH、甲氧基或氟;Base表示碱基,选自A、U、C、G或T。Wherein, R is selected from H, OH, methoxy or fluorine; Base represents a base, selected from A, U, C, G or T.
  51. 如权利要求31-50中任意一项所述的siRNA,其中,所述siRNA为siPCSKa1-M1P1、siPCSKa2-M1P1、siPCSKa1-M1SP1、siPCSKa2-M1SP1、siPCSKb1-M1P1、siPCSKb2-M1P1、siPCSKb1-M1SP1、siPCSKb2-M1SP1、siPCSKc1-M1P1、siPCSKc2-M1P1、siPCSKc1-M1SP1、siPCSKc2-M1SP1、siPCSKd1-M1P1、siPCSKd2-M1P1、siPCSKd1-M1SP1、siPCSKd2-M1SP1、siPCSKe1-M1P1、siPCSKe2-M1P1、siPCSKe1-M1SP1、siPCSKe2-M1SP1、siPCSKf1-M1P1、siPCSKf2-M1P1、siPCSKf1-M1SP1或siPCSKf2-M1SP1中的任意一种。The siRNA according to any one of claims 31-50, wherein the siRNA is siPCSKa1-M1P1, siPCSKa2-M1P1, siPCSKa1-M1SP1, siPCSKa2-M1SP1, siPCSKb1-M1P1, siPCSKb2-M1P1, siPCSKb1-M1SP1, siPCSKb2 -M1SP1, siPCSKc1-M1P1, siPCSKc2-M1P1, siPCSKc1-M1SP1, siPCSKc2-M1SP1, siPCSKd1-M1P1, siPCSKd2-M1P1, siPCSKd1-M1SP1, siPCSKd2-M1SP1, siPCSKe1-M1P1, siPCSKe2-e1-M1P1, siPCSK1SP1 , Any one of siPCSKf1-M1P1, siPCSKf2-M1P1, siPCSKf1-M1SP1 or siPCSKf2-M1SP1.
  52. 如权利要求31-51中任意一项所述的siRNA,其中所述siRNA为siPCSKa1-M1SP、siPCSKb1-M1SP、siPCSKc1-M1SP、siPCSKd1-M1SP、siPCSKe1-M1SP或siPCSKf1-M1SP中的任意一种。The siRNA according to any one of claims 31-51, wherein the siRNA is any one of siPCSKa1-M1SP, siPCSKb1-M1SP, siPCSKc1-M1SP, siPCSKd1-M1SP, siPCSKe1-M1SP, or siPCSKf1-M1SP.
  53. 一种药物组合物,其特征在于,该药物组合物含有权利要求31-52中任意一项所述的siRNA和药学上可接受的载体。A pharmaceutical composition, characterized in that it contains the siRNA according to any one of claims 31-52 and a pharmaceutically acceptable carrier.
  54. 一种siRNA缀合物,所述siRNA缀合物含有权利要求31-52中任意一项所述的siRNA以及缀合连接至该siRNA的缀合基团。An siRNA conjugate containing the siRNA according to any one of claims 31-52 and a conjugate group conjugated to the siRNA.
  55. 权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物在制备用于治疗和/或预防由PCSK9基因异常表达引发的疾病或生理状况的药物中的用途。The siRNA conjugate of any one of claims 1-30 and 54, the siRNA of any one of claims 31-52, and/or the pharmaceutical composition of claim 53 are prepared for treatment and / Or use in medicines for preventing diseases or physiological conditions caused by abnormal expression of PCSK9 gene.
  56. 一种治疗和/或预防由PCSK9基因异常表达引发的疾病或生理状况的方法,其中,所述方法包括将有效量的权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物给予患有该疾病或生理状况的受试者。A method for treating and/or preventing diseases or physiological conditions caused by abnormal expression of PCSK9 gene, wherein the method comprises adding an effective amount of the siRNA conjugate according to any one of claims 1-30 and 54, The siRNA according to any one of claims 31-52 and/or the pharmaceutical composition according to claim 53 is administered to a subject suffering from the disease or physiological condition.
  57. 一种抑制肝细胞中PCSK9基因表达的方法,该方法包括将有效量的权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物与所述肝细胞接触。A method for inhibiting PCSK9 gene expression in hepatocytes, the method comprising adding an effective amount of the siRNA conjugate of any one of claims 1-30 and 54 and the method of any one of claims 31-52 The siRNA and/or the pharmaceutical composition of claim 53 are contacted with the hepatocytes.
  58. 一种试剂盒,其中,该试剂盒含有权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物。A kit, wherein the kit contains the siRNA conjugate according to any one of claims 1-30 and 54, the siRNA according to any one of claims 31-52 and/or the siRNA according to claim 53 The pharmaceutical composition.
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