WO2019184343A1 - Gpu-based multiple mv high-definition algorithm fast medical ultrasound imaging system - Google Patents

Gpu-based multiple mv high-definition algorithm fast medical ultrasound imaging system Download PDF

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WO2019184343A1
WO2019184343A1 PCT/CN2018/113234 CN2018113234W WO2019184343A1 WO 2019184343 A1 WO2019184343 A1 WO 2019184343A1 CN 2018113234 W CN2018113234 W CN 2018113234W WO 2019184343 A1 WO2019184343 A1 WO 2019184343A1
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algorithm
imaging
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陈俊颖
陈锦辉
闵华清
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华南理工大学
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61BDIAGNOSIS; SURGERY; IDENTIFICATION
    • A61B8/00Diagnosis using ultrasonic, sonic or infrasonic waves
    • A61B8/52Devices using data or image processing specially adapted for diagnosis using ultrasonic, sonic or infrasonic waves
    • A61B8/5269Devices using data or image processing specially adapted for diagnosis using ultrasonic, sonic or infrasonic waves involving detection or reduction of artifacts
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61BDIAGNOSIS; SURGERY; IDENTIFICATION
    • A61B8/00Diagnosis using ultrasonic, sonic or infrasonic waves
    • A61B8/44Constructional features of the ultrasonic, sonic or infrasonic diagnostic device
    • A61B8/4411Device being modular
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61BDIAGNOSIS; SURGERY; IDENTIFICATION
    • A61B8/00Diagnosis using ultrasonic, sonic or infrasonic waves
    • A61B8/52Devices using data or image processing specially adapted for diagnosis using ultrasonic, sonic or infrasonic waves
    • A61B8/5207Devices using data or image processing specially adapted for diagnosis using ultrasonic, sonic or infrasonic waves involving processing of raw data to produce diagnostic data, e.g. for generating an image

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  • the invention belongs to the field of medical ultrasound imaging, and particularly relates to a GPU-based multi-MV high-definition algorithm rapid medical ultrasound imaging system.
  • ultrasound imaging technology has been widely used and rapidly developed. Compared with other medical imaging methods, ultrasound imaging technology has the advantages of real-time output of images, high security and low cost. As a common medical diagnostic technique, it is commonly used to observe fetal development, heart movement and blood flow. Among them, the beamforming algorithm is a key part of medical ultrasound imaging technology and has a key impact on image quality.
  • the ultrasound imaging algorithm widely used nowadays is a delayed superposition beamforming algorithm, which is an algorithm that can be easily implemented on different computing platforms and can realize real-time requirements quickly.
  • the delayed superposition beamforming algorithm is effective for many diagnostic scenarios, it does not provide sufficient anatomical detail in some complex diagnostic scenarios. Therefore, the present invention applies a variety of higher definition adaptive minimum variance beamforming (MV) algorithms.
  • the adaptive beamforming algorithm is adaptive to the input echo data and dynamically calculates the apodization weights at runtime. By utilizing the real-time statistical properties of the input echo signals, these algorithms effectively improve imaging quality and provide more anatomical details to improve diagnostic accuracy.
  • the cost of MV algorithm for high quality imaging is higher computational complexity, so its calculations take more time. Such computational complexity hinders the practical clinical application of the minimum variance beamforming algorithm.
  • the core calculation of the traditional medical ultrasound imaging imaging system is usually implemented on the CPU of the central processing unit, but the huge imaging data of the high-definition imaging algorithm and the complicated operation process make the traditional CPU unable to meet the needs of its rapid imaging, and the current GPU ( Graphics processors are growing rapidly, and a single GPU can integrate hundreds or even thousands of computing cores with extremely powerful high-performance computing power. Therefore, the present invention implements a plurality of MV algorithms on a high-performance GPU, greatly improving the imaging speed of the algorithm, thereby completing the core processing module of the high-definition medical imaging device, and providing a rapid imaging basis for clinical diagnosis.
  • the imaging algorithms used in portable medical ultrasonic detectors are traditional time-delay imaging algorithms.
  • the algorithm is simple in operation and can meet the real-time imaging requirements of medical ultrasound, but the image quality is relatively low. Or a higher clearing algorithm is used, but its imaging speed is not ideal due to its large calculation amount.
  • the main object of the present invention is to solve the problem of low imaging quality and slow speed of medical ultrasound imaging devices.
  • the invention provides a GPU-based MV high-definition algorithm rapid medical ultrasound imaging system, and the GPU-based high-speed parallel computing capability completes imaging implementation of various MV high-definition imaging algorithms, Fast HD imaging requirements.
  • GPU-based MV high-definition algorithm rapid medical ultrasound imaging system including initial startup module, simulation simulation module, algorithm imaging module and result display module; wherein, after the initial startup module completes the system initialization setting, the algorithm imaging module is called for imaging, simulation The module acts as an auxiliary module to generate analog data for use by other modules.
  • the algorithm imaging module is the core module of the whole system, and receives the parameter settings from the initial startup module and the data of the module simulation module or the data acquisition device for imaging calculation, and the result display module The final processing and display of the results of other modules, each module works independently and cooperates with each other, and finally realizes the rapid imaging function of various MV algorithms.
  • the initial startup module mainly performs initialization work required during system startup, including initialization parameters, setting imaging scenes, setting enabled algorithms, evaluation indicators, and image display parameters, and most of the initialization settings are consistent with conventional ultrasound imaging systems.
  • the system provides a variety of high-definition imaging algorithms, including conventional MV algorithm, iterative MV algorithm, fused diagonally loaded MV algorithm, forward and backward smooth MV algorithm, fusion of generalized coherence factor MV algorithm, MV algorithm based on feature space processing and MV algorithm combining feature space and symbol coherence coefficient.
  • this module performs system check on the one hand to prevent erroneous diagnosis results caused by equipment failure.
  • the imaging module can be imaged by the simulation simulation module or the imaging data acquisition device.
  • the simulation module uses the Field II analog ultrasound imaging process to obtain simulation data, first simulates the physical data required by the actual ultrasound imaging device setting, creates the transmitting and receiving array elements, and additionally needs to create a virtual object according to the actual application scenario, and then Calculate and collect echo data one by one according to the scan line.
  • the simulation data obtained by this module can be used as the initial input data of the algorithm imaging module. On the one hand, it can be used for the warm-up start of the system software and hardware. On the one hand, it can be used as a comparison benchmark to evaluate or preview the imaging performance of each algorithm in different scenarios. Provides a reference for the algorithm selection of the actual diagnostic scenario. This module is usually initiated by the initial startup module and passes the generated data to the algorithm imaging module for further imaging calculations.
  • the algorithm imaging module is the core part of the system.
  • One of the basic functions that an ultrasound system needs to achieve during imaging is to create a specific sound field distribution in the imaging target area, ie beamforming.
  • the beamforming algorithm is a key part of medical ultrasound imaging technology and has a critical impact on image quality.
  • the algorithm imaging module of the system includes conventional MV algorithm, iterative MV algorithm, FFT algorithm with diagonally loaded loading, forward and backward smooth MV algorithm, MV algorithm combining generalized coherence factor, MV algorithm based on feature space processing and feature space and symbol coherence Coefficient fusion MV algorithm. These algorithms are high-definition adaptive beamforming algorithms. Compared with the traditional pre-fixed weight DAS algorithm, the algorithm in this module can obtain higher quality imaging. At the same time, the system implements these 7 algorithms based on GPU. Imaging, using the high-performance computing power of the GPU, solves the problem of excessive computational complexity caused by high-quality imaging.
  • the algorithm imaging module is started by the initial module, and the original signal data required for imaging is obtained by the data acquisition device or the simulation module, and then the pixel amplitude value is calculated according to the MV algorithm, the imaging is obtained, and the imaging result is given to the result display module. The final ultrasound image is displayed.
  • the main calculation process of the algorithm imaging module can be divided into calculating signal delay, calculating covariance matrix, calculating adaptive weight, calculating optimization operator and calculating pixel amplitude value 5
  • these calculation processes are completed by multi-thread cooperation in the GPU thread block; wherein the calculation part of the optimization operator is the difference of each MV algorithm, embodies the core principles of each algorithm, and the more specific calculation principle of each algorithm and Implementations in the GPU will be explained in the examples.
  • the algorithm imaging module can be called after the initial startup module is set according to the actual diagnosis scenario requirement, and the MV high-definition imaging algorithm is encapsulated by the strategy mode, and the pluggable call is realized, and the addition, deletion or upgrade operation can be conveniently performed.
  • each MV algorithm can combine different parameters such as M and L (the number of receiving signal array elements and the number of sub-array elements) to provide more dimension choices for clinical diagnosis.
  • the result display module further processes the calculation result of the algorithm imaging module, and then outputs the imaging result to the display for display; after the beam imaging is performed, the envelope detection is usually performed after the beam formation (using the Hilbert transform) ), logarithmic compression and grayscale range correction, the result display module outputs the image related data to the corresponding horizontal and vertical after the Hilbert transform, logarithmic compression, and grayscale range correction operations are performed by calling the corresponding function of Maltab. In the coordinate axis, the ultrasound imaging result is finally displayed on the screen; at the same time, the result display module also collects relevant information of the actual diagnosis scene such as hardware status, imaging parameters, evaluation indicators, etc., and displays them in a suitable area of the display. Provide users with comprehensive and detailed information for diagnostic reference.
  • the invention adopts a plurality of MV high-definition algorithms based on GPU to realize fast medical ultrasound imaging, and the imaging algorithm itself adapts and improves the GPU architecture, so that the calculation process is applicable to the GPU computing environment, thereby improving medicine.
  • Image quality and imaging speed for ultrasound imaging is based on the GPU programming architecture and memory hierarchy for targeted parallel programming of various MV HD algorithms to realize the fast imaging function of each HD algorithm.
  • the present invention implements a fast medical ultrasound high-definition imaging system in a computer system with GPU hardware in accordance with the current state of the art. It is characterized in that a plurality of MV algorithms are implemented based on the GPU to achieve rapid medical ultrasound high-definition imaging purposes, and the focus is on parallelizing the calculation process of various high-definition MV algorithms, so that the operation flow is applicable to the computing environment of the GPU, thereby fully
  • the GPU's computing power is utilized to improve the image quality and imaging frame rate of medical ultrasound imaging.
  • the advantages of the present invention are mainly embodied in two aspects: on the one hand, the present invention comprehensively implements a plurality of high-definition MV imaging algorithms, which can effectively improve the image quality of medical ultrasound imaging, and the imaging effect is more than the conventional delay.
  • the superposition algorithm is much better; on the other hand, the powerful computational power of the GPU properly solves the huge computational requirements of each high-definition MV imaging algorithm, thereby greatly increasing the output imaging frame rate of the imaging system, and can quickly output high-definition medical ultrasound images.
  • FIG. 1 is a schematic diagram of a workflow of a fast medical ultrasound imaging system for various MV high definition algorithms based on GPU.
  • Figure 2 (a) is a schematic diagram of the experimental scheme simulated in the example.
  • FIGS. 2(b) to (h) are diagrams showing an example of ultrasound imaging output by each algorithm in the example.
  • the system GPU programming architecture is divided into three levels: grid, block and thread.
  • kernel calls GPU computing, all computational states are done in a GPU computing grid.
  • a GPU computing grid computes a complete medical ultrasound image, and the output target image is decomposed into scan lines and pixels. Therefore, a GPU computing grid contains a matrix of computational blocks, each of which computes the pixel amplitude values according to the principles of each MV algorithm.
  • the computational details of each MV algorithm are implemented by some parallel computational threads (more specific algorithmic principles and their implementation have been described in the Summary of the Invention). These concurrent threads use shared memory to collaborate and perform array or matrix operations by computing independent elements.
  • the optimal value setting for blocks and threads in the calculation hierarchy here depends on the computing platform's resources and the size of the computational problem.
  • the GPU has three basic memory levels: global memory, shared memory, and register memory.
  • the three levels of memory access time relationship are: global memory ⁇ shared memory ⁇ register memory. Therefore, in order to give full play to the computing performance of the GPU, the global memory should be used as little as possible in the calculation process, and the register memory should be used more for calculation.
  • the capacity relationship of the three memory types is: global memory > shared memory > register memory. Therefore, when the system allocates resources, it is considered that small variables are stored in registers, and large data is stored in global memory. .
  • the system is designed according to the actual use scenario.
  • the overall module design is shown in Figure 1. It can be divided into four modules: initial startup module, simulation module, algorithm imaging module and result display module. Each module works independently and cooperates with each other, and finally realizes the rapid imaging function of various MV algorithms. The specific design of each module is explained below.
  • the initial startup module mainly performs the initialization work required during system startup, including initialization parameters, setting the imaging scene, setting the enabled algorithm and image display parameters. As an initial startup, this module performs system check on the one hand to prevent erroneous diagnosis results caused by equipment failure. On the one hand, in addition to the relatively comprehensive initial settings built in the system, it can also be used by professionals to use initial parameters according to actual usage scenarios. The algorithm and display range are set, which can effectively shorten the running time and increase the accuracy. After the basic setup is completed, the simulation module obtains the data required by the imaging simulation module to perform imaging.
  • the simulation module uses the Field ii analog ultrasound imaging process to obtain simulation data. First, simulate the physical data required by the actual ultrasound imaging device setup, create the transmitting and receiving array elements, and additionally create a virtual object according to the actual application scenario, and then press the scan. Lines calculate and collect echo data one by one.
  • the simulation data obtained by this module can be used as the initial input data of the algorithm imaging module to evaluate the imaging performance of each algorithm in this scenario, and provide reference for the selection algorithm.
  • the algorithm imaging module contains a variety of medical ultrasound MV imaging algorithms and is a core part of the system.
  • the module is started by the initial module, and the original signal data required for imaging is obtained by combining the simulation module, and then the pixel amplitude value calculation is performed according to the MV algorithm, the imaging is obtained, and the imaging result is given to the result display module to display the final ultrasound image.
  • the main calculation process of this module can be divided into five parts, namely, calculating signal delay, calculating covariance matrix, calculating adaptive weight, other improved calculation and calculating pixel amplitude value.
  • the calculation process is done in a GPU thread block by multi-threaded collaboration.
  • the improved calculation part is the difference of each MV algorithm, which embodies the core principle of each algorithm. The more specific calculation principle of each algorithm and its implementation in GPU will be explained below.
  • this module implements the policy mode, which is called by the initial startup module according to the needs.
  • Each MV algorithm is independently implemented and pluggable, which is convenient to add, delete or upgrade.
  • each MV algorithm can combine different parameters such as M and L (the number of receiving signal array elements and the number of sub-array elements) to provide more choices for clinical diagnosis.
  • the imaging module After the imaging module obtains the imaging data, the result is displayed by the result display module.
  • the module performs the Hilbert transform, the logarithmic compression, the grayscale range correction, etc. after calling the Maltab function.
  • the data is output to the corresponding horizontal and vertical axis, and finally, the ultrasound imaging result is displayed on the screen.
  • the most common adaptive beamforming algorithm is based on the adaptive minimum variance (MV) beamformer designed by Capon in 1969.
  • the conventional MV algorithm is based on a delayed superposition beamforming algorithm that has the same input and output data streams and the same delay superposition process.
  • the main difference is that the minimum variance beamforming algorithm uses apodized weight adaptive input of ultrasound data, while the delayed superposition beamforming algorithm cannot adapt to the fixed apodization weight of the input data. It is this primary difference that makes the quality of the output image of the minimum variance beamforming algorithm higher than that of the delay stacking algorithm.
  • the MV beamforming algorithm uses a subaperture averaging method.
  • a receive aperture consists of M consecutive input data channels and is divided into a set of sub-apertures consisting of L consecutive input channels. Therefore, one receiving aperture consists of (M ⁇ L+1) sub-apertures.
  • the covariance matrix R MV (p) of the pixel point p can be calculated by the following equation.
  • x i (p) is a (L ⁇ 1) vector consisting of echo signal data input in the i th subarray, eg x i (p) represents the i th th to (i) in x(p) +L-1)
  • x(p) is a (L ⁇ 1) vector composed of delayed signal values corresponding to pixel points.
  • the GPU implementation of the conventional MV algorithm is the basis for other improved MV algorithms.
  • the calculation grid and the thread block size are organized by a two-dimensional subscript, wherein the X, Y size of the calculation grid corresponds to the number of scanned lines and the number of pixels on each scan line; X ⁇ L in the thread block. Y is obtained according to the set total number of threads per thread block and the size of X.
  • the delay calculation part obtains valid start and end array elements according to the scan line position, and then calculates the delay in parallel by the thread in the thread block to obtain the corresponding signal and stores the corresponding address in the shared memory. In this process, the position of the array element is symmetric. Sexuality, part of the signal can be obtained by only one calculation process to obtain the corresponding signal, thereby reducing the amount of calculation.
  • the system directly calculates the product of the inverse of the covariance matrix and the direction vector by Cholesky decomposition, thereby eliminating the inversion process and parallel computing through multi-thread cooperation in a thread block.
  • the final superimposed part is small in magnitude because of the actual array element, so it can be directly calculated by a specific thread.
  • the core of the conventional MV beamforming algorithm is the estimation of the noise covariance matrix, and the main cause of the MV error is the result of using the sample covariance matrix instead of the noise covariance matrix. Therefore, Eng Nai Wee, Ser et al. proposed an iterative minimum variance beamforming (IMV) algorithm in 2011, hoping to improve the estimation accuracy of the noise covariance matrix by multiple iterations.
  • IMV iterative minimum variance beamforming
  • the output of the conventional MV beamforming algorithm is used as an estimate of the expected signal amplitude:
  • the desired signal is separated from the received signal, and the rest is the interference and the acoustic component, as shown in equation (2-5):
  • the IMV algorithm can significantly improve the contrast of the MV algorithm, but the inverse calculation in the iterative process will cause a large computational overhead, which is not conducive to real-time performance of the algorithm.
  • the computational process of the iterative MV algorithm is essentially the same as that of the conventional MV algorithm, except that the process of weighting in the conventional MV algorithm is repeated, and the amplitude estimate of the previous iteration is subtracted in the calculation process. Therefore, the amplitude value obtained by the last calculation is recorded by adding a variable, and is subtracted every time the original signal is read.
  • the rest of the process uses the parallel calculation scheme of the conventional MV algorithm, so that iteration can be obtained by further iterative calculation.
  • the pixel amplitude value of the MV algorithm Its imaging speed is compared to the conventional MV algorithm depending on the number of iterations desired.
  • the diagonal loading process is to superimpose a certain proportion of the unit matrix on the original matrix, as shown in the following equation:
  • diagonal loading is to superimpose Gaussian white noise proportional to the signal power on the original signal, increasing the independence between signals.
  • the MV algorithm combined with diagonal loading mainly adds a certain proportion of Gaussian white noise to the conventional MV algorithm after the covariance matrix is obtained, so the GPU parallel implementation scheme of the conventional MV algorithm can still be used. Then, based on this On the other hand, after the calculation of the covariance matrix is completed, the part of the thread is calculated to calculate the value to be added, and then added to the diagonal of the matrix. Since there is no access conflict in the overlay process, parallel operations can be performed through L threads in the thread block to complete the diagonal loading process faster, and the purpose of fast imaging is achieved.
  • the forward and backward smoothed minimum variance (FBMV) beamforming algorithm is an improved algorithm of AsL et al. for the MV algorithm proposed to improve contrast.
  • the core idea of the algorithm is to estimate the more accurate covariance matrix needed to calculate the apodization weights. It uses a forward-backward smoothing technique instead of the traditional forward-only spatial smoothing, resulting in more accurate background speckle statistics and thus improved contrast.
  • J represents the exchange matrix, that is, the unit matrix is flipped left and right.
  • the forward-and-forward smoothing MV algorithm corresponds to the forward spatial smoothing estimate obtained by the conventional MV algorithm, and the backward spatial smoothing value can be obtained in the forward estimated relative position. Therefore, after the conventional MV algorithm completes its covariance matrix calculation, the parallel scheme when calculating the covariance matrix is used to obtain the backward smoothed value stored in the temporary variable, and at the same time, the value of the joint estimation is forward and backward.
  • the estimated averages are thus numerically equal, and the average calculation can be performed directly in the corresponding position in the matrix after the values are obtained. This scheme can achieve good parallel computing without increasing memory overhead, which greatly saves the computation time of the joint covariance matrix.
  • the calculation of GCF is based on multi-channel data after focus delay.
  • the array element domain data is transformed from the array element domain to the beam domain by Fourier transform:
  • y(m) is the data after transforming into the beam domain, and then calculating the energy of each beam direction, and obtaining the ratio of the energy of the coherent direction to the total energy as the value of GCF:
  • K is the energy ratio that controls the low frequency component of GCF.
  • the calculation process of the conventional MV algorithm should be completed once, and then combined with the GCF by the equation (3-12) to obtain the final amplitude estimate of the pixel.
  • v MV_GCF (p) c GCF (p) ⁇ v MV (p). (3-12)
  • This method combines the robustness of the generalized coherence coefficient with phase error and the high resolution capability of the MV algorithm.
  • the MV algorithm combining the generalized coherence factor has a calculation process for calculating the pixel amplitude value consistent with the conventional MV algorithm. Therefore, the GPU implementation scheme of the conventional MV algorithm is still applied thereto. Then, after obtaining the pixel amplitude value, Fourier transform is performed on the array metadata stored in the shared memory, and the coherence factor is calculated according to the above algorithm, and finally the amplitude value obtained by the conventional MV algorithm is multiplied.
  • the part without read-write cross-linking can still be performed in parallel in the same thread block through multiple threads, thereby speeding up the calculation process.
  • the system also tries to use less equivalent calculation of equivalent replacement calculation or unnecessary calculation to further accelerate the imaging speed.
  • the minimum variance beamforming algorithm can improve the resolution of the image to a certain extent, but can not significantly improve the contrast of the image.
  • Asl et al. proposed a minimum variance (ESBMV) beamforming algorithm based on feature space processing.
  • the ESBMV algorithm uses the feature structure of the covariance matrix to enhance the performance of the conventional MV algorithm, which can reduce the main lobe signal while reducing the side.
  • the amplitude of the flap improves imaging quality.
  • N sig determines the ability of the beamforming method to maintain the main lobe signal and reduce the side lobe signal, usually greater than the maximum eigenvalue ⁇ (0.1 ⁇ ⁇ ⁇ 5.5) times or greater than the minimum eigenvalue ⁇ (0.1 ⁇ ⁇ ⁇ . 5)
  • the number of feature vectors is determined by multiples.
  • the weighted value obtained by the conventional MV algorithm is projected to the signal subspace obtained by the feature space method, and the weighted value of the ESBMV is obtained:
  • the resulting output of the resulting ESBMV beamforming is:
  • ESBMV Compared to conventional MV beamforming, ESBMV is capable of effective contrast and signal to noise ratio. However, its drawback is that when the noise exceeds the strength of the desired signal, the algorithm will recognize the noise as the desired signal, which may result in a completely erroneous result.
  • the MV algorithm based on feature space processing has one more computational feature space decomposition process than the conventional MV algorithm.
  • the Jocobi decomposition method is used for feature decomposition.
  • the part that still has no access conflict is paralleled by multi-thread in the thread block as much as possible.
  • shared memory it is necessary to add shared memory for storing the intermediate value of the feature decomposition process based on the original MV algorithm.
  • it is mainly used to store feature vectors, and the feature values can be stored in the last calculation that has not been used yet. Allocated in shared memory. Because the size of the shared memory is limited, the number of thread blocks that can be run in parallel in the actual GPU is limited.
  • the resolution of the image is mainly determined by the width of the main lobe, and the resolution of the image obtained by ESBMV beamforming is almost the same as that of the conventional MV algorithm.
  • the coefficients are introduced into the ESBMV algorithm, and a beamforming algorithm combining feature space and symbol coherence coefficient (SCF) is proposed.
  • the SCF can be considered as a nonlinear function of the beamforming device. It requires less hardware resources and can be quickly integrated into the beamforming device, and its value can be calculated by equation (3-16):
  • v ESBMV_SCF (p) c SCF (p) ⁇ v ESBMV (p). (3-18)
  • This method combines the robustness of the coherence coefficient with respect to the phase error with the high resolution of the ESBMV.
  • the computational process of MV algorithm with feature space and symbol coherence coefficient is mainly based on the MV algorithm based on feature space processing and then multiplied by a symbol coherence coefficient. Therefore, its GPU implementation is consistent with the MV algorithm based on feature space processing. In the end, only one step of the symbol coherence coefficient is calculated according to the formula as described above. This process is the same as the MV algorithm which combines the generalized coherence factor, and the unnecessary calculation is saved by thread parallelism, replacement calculation, etc. to accelerate the imaging. speed.
  • the system uses a Field II simulator to simulate ultrasound channel data samples to perform a series of related experiments to obtain the imaging performance of the system.
  • the following simulation simulates a vesicle virtual image in a speckle as shown in Fig. 2(a) as an imaging scene.
  • the field II simulator was used to simulate the echo data samples of the ultrasonic channel.
  • the simulation parameters are set in Table 1.
  • each of the aforementioned MV algorithms is analyzed experimentally, each of which is programmed as a beamformer and parallelizes the pixel calculation process to save program run time.
  • the parameters of each algorithm are set to their usual values, for example, the number of subaperture channels is set to 32.
  • the results of the test are shown in Figures 2(b) to (h), and all images show a dynamic range of 60 dB. Comparing these figures, it can be seen that the imaging sharpness of various beamformers is sufficient to distinguish the target, which embodies the ability of these MV algorithms for high-definition imaging, but the contrast of different algorithms still has some differences in this imaging scene. In clinical use, different algorithms need to be selected according to actual needs for imaging.
  • the beamforming algorithm is a key part of medical ultrasound imaging technology.
  • the MV adaptive beamforming algorithm utilizes the real-time statistical characteristics of the input echo data, so it has higher output imaging than the traditional DAS beamforming algorithm. quality.
  • the system realizes rapid imaging of a variety of high-definition MV algorithms through the powerful high-performance computing power of the GPU, which can provide a fast and effective imaging basis for clinical diagnosis.

Abstract

Disclosed in the present invention is a graphics processing unit (GPU)-based multiple MV high-definition algorithm fast medical ultrasound imaging system. The system of the present invention comprises an initial startup module, a simulation module, an algorithm imaging module, and a result display module; after the initial startup module completes system initialization configuration, the algorithm imaging module is called to perform imaging, and the simulation module is used as an auxiliary module to generate simulation data for other modules to use. The algorithm imaging module is a core module of the entire system and receives a parameter configuration from the initial startup module and data from the simulation module or a data acquisition device for imaging calculation, and the result display module performs final processing and display of the results of other modules, thereby finally achieving a rapid imaging function of multiple MV algorithms. The present invention may complete the complex calculation of high-definition medical ultrasound image algorithms in a very short period of time, and the GPU programming implementation schemes of various MV high-definition algorithms may be conveniently deployed on a computer having a GPU, which may effectively meet user requirements and which has high practicability.

Description

基于GPU的多种MV高清算法快速医学超声影像系统GPU-based multiple MV high-definition algorithm fast medical ultrasound imaging system 技术领域Technical field
本发明属于医学超声成像领域,具体涉及基于GPU的多种MV高清算法快速医学超声影像系统。The invention belongs to the field of medical ultrasound imaging, and particularly relates to a GPU-based multi-MV high-definition algorithm rapid medical ultrasound imaging system.
背景技术Background technique
近年来,医学超声成像技术被广泛地应用并得到快速发展。与其它医学成像方法相比,超声成像技术具有可实时输出图像,高安全性和低花费等优势。作为一种常见的医学诊断技术,它通常用于观察胎儿发育,心脏运动和血液流动等。其中,波束成形算法是医学超声成像技术的关键部分,对图像质量具有关键影响。In recent years, medical ultrasound imaging technology has been widely used and rapidly developed. Compared with other medical imaging methods, ultrasound imaging technology has the advantages of real-time output of images, high security and low cost. As a common medical diagnostic technique, it is commonly used to observe fetal development, heart movement and blood flow. Among them, the beamforming algorithm is a key part of medical ultrasound imaging technology and has a key impact on image quality.
现在广泛流通使用的超声成像算法是延迟叠加波束形成算法,这是一种容易实现在不同计算平台且能快捷实现实时要求的算法。虽然延迟叠加波束形成算法有效应用于很多诊断场景,但是在一些复杂的诊断场景中它就不能提供足够的解剖结构细节。因此,本发明应用了多种更高清的自适应最小方差波束形成(MV)算法。自适应波束形成算法自适应于输入的回波数据,在运行时动态地计算变迹权重。由于利用了输入回波信号的实时统计特性,这些算法有效提高了成像质量,能提供更多的解剖结构细节,从而提高诊断正确率。The ultrasound imaging algorithm widely used nowadays is a delayed superposition beamforming algorithm, which is an algorithm that can be easily implemented on different computing platforms and can realize real-time requirements quickly. Although the delayed superposition beamforming algorithm is effective for many diagnostic scenarios, it does not provide sufficient anatomical detail in some complex diagnostic scenarios. Therefore, the present invention applies a variety of higher definition adaptive minimum variance beamforming (MV) algorithms. The adaptive beamforming algorithm is adaptive to the input echo data and dynamically calculates the apodization weights at runtime. By utilizing the real-time statistical properties of the input echo signals, these algorithms effectively improve imaging quality and provide more anatomical details to improve diagnostic accuracy.
MV算法得到高质量成像的代价是更高的计算复杂度,所以,它的计算需要耗费更多的时间。这样的计算复杂度阻碍了最小方差波束形成算法在实际临床上的应用。传统的医学超声成像成像系统的核心计算通常在中央处理器CPU上实现,但高清成像算法的庞大成像数据及复杂的运算过程,使得传统CPU已经无法满足其快速成像的需求,而现在的GPU(图形处理器)发展迅猛,一个GPU可集成上百乃至上千个运算核心,具有极其强大的高性能计算能力。因此,本发明将多种MV算法在高性能GPU上的实现,大大提高了算法的成像速度,以此完成高清医学成像设备的核心处理模块,为临床诊断提供快速成像依据。The cost of MV algorithm for high quality imaging is higher computational complexity, so its calculations take more time. Such computational complexity hinders the practical clinical application of the minimum variance beamforming algorithm. The core calculation of the traditional medical ultrasound imaging imaging system is usually implemented on the CPU of the central processing unit, but the huge imaging data of the high-definition imaging algorithm and the complicated operation process make the traditional CPU unable to meet the needs of its rapid imaging, and the current GPU ( Graphics processors are growing rapidly, and a single GPU can integrate hundreds or even thousands of computing cores with extremely powerful high-performance computing power. Therefore, the present invention implements a plurality of MV algorithms on a high-performance GPU, greatly improving the imaging speed of the algorithm, thereby completing the core processing module of the high-definition medical imaging device, and providing a rapid imaging basis for clinical diagnosis.
目前便携式医学超声检测仪中使用的成像算法大多是传统的延时叠加成像算法,该算法运算简单,能满足医学超声的实时成像要求,但图像质量相对较低。或者也有采用较高清算法的,但因其较大的计算量导致其成像速度很不理想。At present, most of the imaging algorithms used in portable medical ultrasonic detectors are traditional time-delay imaging algorithms. The algorithm is simple in operation and can meet the real-time imaging requirements of medical ultrasound, but the image quality is relatively low. Or a higher clearing algorithm is used, but its imaging speed is not ideal due to its large calculation amount.
发明内容Summary of the invention
本发明的主要目的是解决目前医学超声成像设备成像质量低及速度慢的问题。本发明为了实现高清成像算法在医学超声检测仪中的应用,提供基于GPU的多种MV高清算法快速医学超声影像系统,基于GPU的高速并行计算能力完成多种MV高清成像算法的成像实现,达到快速的高清成像要求。The main object of the present invention is to solve the problem of low imaging quality and slow speed of medical ultrasound imaging devices. In order to realize the application of the high-definition imaging algorithm in the medical ultrasonic detector, the invention provides a GPU-based MV high-definition algorithm rapid medical ultrasound imaging system, and the GPU-based high-speed parallel computing capability completes imaging implementation of various MV high-definition imaging algorithms, Fast HD imaging requirements.
本发明的目的通过以下技术方案实现。The object of the present invention is achieved by the following technical solutions.
基于GPU的多种MV高清算法快速医学超声影像系统,包括初始启动模块、模拟仿真模块、算法成像模块和结果显示模块;其中,初始启动模块完成系统初始化设置后调用算法成像模块进行成像,模拟仿真模块作为一个辅助模块产生模拟数据供其他模块使用,算法成像模块是整个系统的核心模块,接收来自初始启动模块的参数设置与模块仿真模块或数据采集设备的数据进行成像计算,而结果显示模块则对其他模块的结果进行最后的处理与显示,各个模块之间既独立工作又相互协作,最终实现多种MV算法的快速成像功能。GPU-based MV high-definition algorithm rapid medical ultrasound imaging system, including initial startup module, simulation simulation module, algorithm imaging module and result display module; wherein, after the initial startup module completes the system initialization setting, the algorithm imaging module is called for imaging, simulation The module acts as an auxiliary module to generate analog data for use by other modules. The algorithm imaging module is the core module of the whole system, and receives the parameter settings from the initial startup module and the data of the module simulation module or the data acquisition device for imaging calculation, and the result display module The final processing and display of the results of other modules, each module works independently and cooperates with each other, and finally realizes the rapid imaging function of various MV algorithms.
进一步的,初始启动模块主要进行系统启动时需要的初始化工作,包括初始化参数、设置成像场景、设置启用的算法、评估指标及图像显示参数,其中大多数初始化设置提供了与传统超声成像系统一致的选项,而对于成像算法的设置,本系统则提供了多种高清成像算法的选择,包括常规MV算法、迭代MV算法、融合对角加载的MV算法、前后向平滑MV算法、融合广义相干因子的MV算法、基于特征空间处理的MV算法和特征空间与符号相干系数融合的MV算法。此模块作为初始启动,一方面进行系统检查,防止因设备故障而导致错误的诊断结果,一方面除了系统内置的比较全面的初始设置外,还可供专业人员根据实际使用场景对初始参数、使用的算法以及显示范围等进行设置,这可有效缩短运行时间并且增加准确性。初始启动模块在基本设置完毕后可通过模拟仿真模块或成像数据采集设备取得成像所需数据启用算法成像模块进行成像。Further, the initial startup module mainly performs initialization work required during system startup, including initialization parameters, setting imaging scenes, setting enabled algorithms, evaluation indicators, and image display parameters, and most of the initialization settings are consistent with conventional ultrasound imaging systems. Option, and for the setting of imaging algorithm, the system provides a variety of high-definition imaging algorithms, including conventional MV algorithm, iterative MV algorithm, fused diagonally loaded MV algorithm, forward and backward smooth MV algorithm, fusion of generalized coherence factor MV algorithm, MV algorithm based on feature space processing and MV algorithm combining feature space and symbol coherence coefficient. As an initial startup, this module performs system check on the one hand to prevent erroneous diagnosis results caused by equipment failure. On the one hand, in addition to the relatively comprehensive initial settings built in the system, it can also be used by professionals to use initial parameters according to actual usage scenarios. The algorithm and display range are set, which can effectively shorten the running time and increase the accuracy. After the basic startup module is completed, the imaging module can be imaged by the simulation simulation module or the imaging data acquisition device.
进一步的,模拟仿真模块采用Field II模拟超声成像过程取得仿真数据,首先模拟现实的超声成像设备设置需要的物理数据,创建发射和接收阵元,另外需根据实际应用场景需要创建虚拟的物体,然后,按扫描线逐条计算并收集回波数据。此模块获得的模拟数据可作为算法成像模块的初始输入数据,一方面可用于系统软硬件的预热启动,一方面可作为一个判断的对比基准,以评估或预览不同场景下各算法的成像性能,为实际诊断场景的算法选择提供参考。此模块通常由初始启动模块进行调用启动并将产生的数据传给算法成像模块作进一步的成像计算。Further, the simulation module uses the Field II analog ultrasound imaging process to obtain simulation data, first simulates the physical data required by the actual ultrasound imaging device setting, creates the transmitting and receiving array elements, and additionally needs to create a virtual object according to the actual application scenario, and then Calculate and collect echo data one by one according to the scan line. The simulation data obtained by this module can be used as the initial input data of the algorithm imaging module. On the one hand, it can be used for the warm-up start of the system software and hardware. On the one hand, it can be used as a comparison benchmark to evaluate or preview the imaging performance of each algorithm in different scenarios. Provides a reference for the algorithm selection of the actual diagnostic scenario. This module is usually initiated by the initial startup module and passes the generated data to the algorithm imaging module for further imaging calculations.
进一步的,算法成像模块是本系统的核心部分。超声系统在成像过程中需要实现的一个基本功能是在成像目标区域产生特定的声场分布,即波束形成,因而波束形成算法是医学超声成像技术的关键部分,对图像质量具有关键影响。本系统的算法成像模块包含常规MV算法、迭代MV算法、融合对角加载的MV算法、前后向平滑MV算法、融合广义相干因子的MV算法、基于特征空间处理的MV算法和特征空间与符号相干系数融合的MV算法。这些算法都是高清的自适应波束形成算法,相比于传统预固定权重的DAS算法,此模块中的算法可得到更高质量的成像,同时,本系统基于GPU实现了这7种算法的快速成像,利用GPU的高性能计算能力解决了高质量成像带来的计算量过大问题。Further, the algorithm imaging module is the core part of the system. One of the basic functions that an ultrasound system needs to achieve during imaging is to create a specific sound field distribution in the imaging target area, ie beamforming. The beamforming algorithm is a key part of medical ultrasound imaging technology and has a critical impact on image quality. The algorithm imaging module of the system includes conventional MV algorithm, iterative MV algorithm, FFT algorithm with diagonally loaded loading, forward and backward smooth MV algorithm, MV algorithm combining generalized coherence factor, MV algorithm based on feature space processing and feature space and symbol coherence Coefficient fusion MV algorithm. These algorithms are high-definition adaptive beamforming algorithms. Compared with the traditional pre-fixed weight DAS algorithm, the algorithm in this module can obtain higher quality imaging. At the same time, the system implements these 7 algorithms based on GPU. Imaging, using the high-performance computing power of the GPU, solves the problem of excessive computational complexity caused by high-quality imaging.
算法成像模块由初始模块进行调用启动,通过数据采集设备或模拟仿真模块获得成像所需的原始信号数据,然后根据MV算法进行像素幅度值计算,取得成像,并将成像结果交给结果显示模块以显示最终的超声图像。The algorithm imaging module is started by the initial module, and the original signal data required for imaging is obtained by the data acquisition device or the simulation module, and then the pixel amplitude value is calculated according to the MV algorithm, the imaging is obtained, and the imaging result is given to the result display module. The final ultrasound image is displayed.
进一步的,对各MV算法进行比较分析等综合研究后,可将算法成像模块主要计算过程分为计算信号延迟,计算协方差矩阵,计算自适应权重,计算优化算子和计算像素幅度值5个部分,这些计算过程在GPU线程块中通过多线程协作完成;其中,优化算子的计算部分为各个MV算法的不同之处,体现了各个算法的核心原理,各个算法的更具体计算原理及其在GPU中的实现将在实例中进行阐述。Further, after comprehensive research on the comparison and analysis of each MV algorithm, the main calculation process of the algorithm imaging module can be divided into calculating signal delay, calculating covariance matrix, calculating adaptive weight, calculating optimization operator and calculating pixel amplitude value 5 In part, these calculation processes are completed by multi-thread cooperation in the GPU thread block; wherein the calculation part of the optimization operator is the difference of each MV algorithm, embodies the core principles of each algorithm, and the more specific calculation principle of each algorithm and Implementations in the GPU will be explained in the examples.
算法成像模块可根据实际诊断场景需求经由初始启动模块进行设定后调用,采用策略模式对各MV高清成像算法进行封装,并实现可插拔式调用,可方便地进行增加、删除或升级操作。同时,各个MV算法均可组合不同的M和L(接收信号阵元数量及子阵列阵元数量)等不同参数进行成像,为临床诊断提供更多维度的选择。The algorithm imaging module can be called after the initial startup module is set according to the actual diagnosis scenario requirement, and the MV high-definition imaging algorithm is encapsulated by the strategy mode, and the pluggable call is realized, and the addition, deletion or upgrade operation can be conveniently performed. At the same time, each MV algorithm can combine different parameters such as M and L (the number of receiving signal array elements and the number of sub-array elements) to provide more dimension choices for clinical diagnosis.
进一步的,结果显示模块对算法成像模块的计算结果进行进一步的处理后将成像结果输出到显示器中进行显示;超声成像在经过波束形成后,通常还会进行包络检波(采用希尔伯特变换)、对数压缩和都灰阶范围校正,结果显示模块通过调用Maltab相应函数对数据进行希尔伯特变换、对数压缩、灰阶范围校正操作后,将图像相关数据输出到对应的横纵坐标轴内,最终在屏幕上显示出超声成像结果;同时,结果显示模块也会收集实际诊断场景的相关信息如硬件状态、成像参数、评估指标等,并将其显示在显示器的合适区域中,为使用人员提供全面详尽的信息供诊断参考。Further, the result display module further processes the calculation result of the algorithm imaging module, and then outputs the imaging result to the display for display; after the beam imaging is performed, the envelope detection is usually performed after the beam formation (using the Hilbert transform) ), logarithmic compression and grayscale range correction, the result display module outputs the image related data to the corresponding horizontal and vertical after the Hilbert transform, logarithmic compression, and grayscale range correction operations are performed by calling the corresponding function of Maltab. In the coordinate axis, the ultrasound imaging result is finally displayed on the screen; at the same time, the result display module also collects relevant information of the actual diagnosis scene such as hardware status, imaging parameters, evaluation indicators, etc., and displays them in a suitable area of the display. Provide users with comprehensive and detailed information for diagnostic reference.
本发明采用基于GPU实现的多种MV高清算法来实现快速的医学超声成像,并且成像算法本身针对GPU架构做出了相应的适配和改进,使其计算流程适用于GPU计算环境,从而提高医学超声成像的图像质量与成像速度。系统采用的编程实现方案基于GPU的编程架构及内存层次对多种MV高清算法进行针对性的并行化编程,以实现各高清算法快速成像的功能。The invention adopts a plurality of MV high-definition algorithms based on GPU to realize fast medical ultrasound imaging, and the imaging algorithm itself adapts and improves the GPU architecture, so that the calculation process is applicable to the GPU computing environment, thereby improving medicine. Image quality and imaging speed for ultrasound imaging. The programming implementation scheme adopted by the system is based on the GPU programming architecture and memory hierarchy for targeted parallel programming of various MV HD algorithms to realize the fast imaging function of each HD algorithm.
本发明依据现有科学技术现状,在带有GPU硬件的计算机系统中实现一个快速的医学超声高清成像系统。其特征在于基于GPU实现多种MV算法来达到快速的医学超声高清成像目的,其重点是对多种高清MV算法的计算过程进行并行化处理,使其运算流程适用于GPU的运算环境,从而充分发挥GPU的计算能力,提高医学超声成像的图像质量与成像帧率。The present invention implements a fast medical ultrasound high-definition imaging system in a computer system with GPU hardware in accordance with the current state of the art. It is characterized in that a plurality of MV algorithms are implemented based on the GPU to achieve rapid medical ultrasound high-definition imaging purposes, and the focus is on parallelizing the calculation process of various high-definition MV algorithms, so that the operation flow is applicable to the computing environment of the GPU, thereby fully The GPU's computing power is utilized to improve the image quality and imaging frame rate of medical ultrasound imaging.
与现有技术相比,本发明的优点主要体现在两个方面:一方面,本发明综合实现了多种高清MV成像算法,可有效提高医学超声成像的图像质量,其成像效果比传统的延迟叠加算法好很多;另一方面,通过GPU强大的计算能力妥善解决各高清MV成像算法庞大的计算需求,从而使成像系统的输出成像帧率大幅提高,可以快速地输出高清的医学超声图像。Compared with the prior art, the advantages of the present invention are mainly embodied in two aspects: on the one hand, the present invention comprehensively implements a plurality of high-definition MV imaging algorithms, which can effectively improve the image quality of medical ultrasound imaging, and the imaging effect is more than the conventional delay. The superposition algorithm is much better; on the other hand, the powerful computational power of the GPU properly solves the huge computational requirements of each high-definition MV imaging algorithm, thereby greatly increasing the output imaging frame rate of the imaging system, and can quickly output high-definition medical ultrasound images.
附图说明DRAWINGS
图1为基于GPU实现的多种MV高清算法快速医学超声影像系统工作流程示意图。FIG. 1 is a schematic diagram of a workflow of a fast medical ultrasound imaging system for various MV high definition algorithms based on GPU.
图2(a)为实例中模拟的实验方案示意图。Figure 2 (a) is a schematic diagram of the experimental scheme simulated in the example.
图2(b)~(h)为实例中各算法输出的超声成像示例图。2(b) to (h) are diagrams showing an example of ultrasound imaging output by each algorithm in the example.
具体实施方式detailed description
以下结合附图和实例对本发明的具体实施作进一步说明,但本发明的实施和保护不限于此。需指出的是,若有未特别详细说明之处或现有算法公式符号等,均是本领域技术人员可参考现有技术实现或理解的,在此不再赘述。The specific embodiments of the present invention are further described below in conjunction with the drawings and examples, but the implementation and protection of the present invention is not limited thereto. It should be noted that, if there is any detailed description or an existing algorithm formula symbol, etc., it can be implemented or understood by those skilled in the art with reference to the prior art, and details are not described herein again.
本系统GPU编程架构分为三个层次:网格、块和线程。当内核调用GPU计算时,所有的计算状态均在一个GPU计算网格中完成。一个GPU计算网格计算一幅完整的医学超声图像,而输出的目标图像则被分解为扫描线和像素。因此,一个GPU计算网格包含一个矩阵的计算块,每个块根据各MV算法的原理进行像素幅度值的计算。为了获得一个像素的最终幅度估算值,各MV算法的计算细节通过一些并行的计算线程实现(更具体的算法原理及其实现已在发明内容中进行了说明)。这些同时运行的线程利用共享内存进行合作并通过计算独立元素来进行数组或矩阵运算。此处计算层次中块和线程的最佳数值设置依赖于计算平台的资源和计算问题的大小。The system GPU programming architecture is divided into three levels: grid, block and thread. When the kernel calls GPU computing, all computational states are done in a GPU computing grid. A GPU computing grid computes a complete medical ultrasound image, and the output target image is decomposed into scan lines and pixels. Therefore, a GPU computing grid contains a matrix of computational blocks, each of which computes the pixel amplitude values according to the principles of each MV algorithm. In order to obtain a final amplitude estimate for a pixel, the computational details of each MV algorithm are implemented by some parallel computational threads (more specific algorithmic principles and their implementation have been described in the Summary of the Invention). These concurrent threads use shared memory to collaborate and perform array or matrix operations by computing independent elements. The optimal value setting for blocks and threads in the calculation hierarchy here depends on the computing platform's resources and the size of the computational problem.
在GPU的实现中,数据从CPU内存中拷贝到GPU显存中,经GPU计算后,将成像数据拷贝回CPU内存中进行显示。在这个过程中,内存的利用率是非常重要的。GPU有三个基本的内存层次:全局内存,共享内存和寄存器内存。这三个层次的内存访问时间长短关系是:全局存储器<共享内存<寄存器内存。所以,为了充分发挥GPU的计算性能,在计算过程中应尽量少地使用全局内存,而更多地使用寄存器内存进行计算。然而,三种内存类型的容量大小关系为:全局存储器>共享内存>寄存器内存。因此,本系统在进行资源分配的时候,尽量考虑小型的变量存储在寄存器中,而大型的数据则存储在全局内存中。。In the implementation of the GPU, data is copied from the CPU memory to the GPU memory, and after being calculated by the GPU, the imaged data is copied back to the CPU memory for display. In this process, memory utilization is very important. The GPU has three basic memory levels: global memory, shared memory, and register memory. The three levels of memory access time relationship are: global memory <shared memory < register memory. Therefore, in order to give full play to the computing performance of the GPU, the global memory should be used as little as possible in the calculation process, and the register memory should be used more for calculation. However, the capacity relationship of the three memory types is: global memory > shared memory > register memory. Therefore, when the system allocates resources, it is considered that small variables are stored in registers, and large data is stored in global memory. .
本系统根据实际使用场景进行模块设计,其总体模块设计如图1所示,具体可分为初始启动模块,模拟仿真模块,算法成像模块和结果显示模块等4个模块。每个模块之间既独立工作又相互合作,最终实现多种MV算法的快速成像功能,以下对各个模块的具体设计进行阐述。The system is designed according to the actual use scenario. The overall module design is shown in Figure 1. It can be divided into four modules: initial startup module, simulation module, algorithm imaging module and result display module. Each module works independently and cooperates with each other, and finally realizes the rapid imaging function of various MV algorithms. The specific design of each module is explained below.
(1)初始启动模块(1) Initial startup module
初始启动模块主要进行系统启动时需要的初始化工作,包括初始化参数,设置成像场景,设置启用的算法及图像显示参数等。此模块作为初始启动,一方面进行系统检查,防止因设备故障而导致错误的诊断结果,一方面除了系统内置的比较全面的初始设置外,还可供专业人员 根据实际使用场景对初始参数、使用的算法以及显示范围等进行设置,这可有效缩短运行时间并且增加准确性。初始启动模块在基本设置完毕后通过模拟仿真模块取得成像所需数据启用算法成像模块进行成像。The initial startup module mainly performs the initialization work required during system startup, including initialization parameters, setting the imaging scene, setting the enabled algorithm and image display parameters. As an initial startup, this module performs system check on the one hand to prevent erroneous diagnosis results caused by equipment failure. On the one hand, in addition to the relatively comprehensive initial settings built in the system, it can also be used by professionals to use initial parameters according to actual usage scenarios. The algorithm and display range are set, which can effectively shorten the running time and increase the accuracy. After the basic setup is completed, the simulation module obtains the data required by the imaging simulation module to perform imaging.
(2)模拟仿真模块(2) Simulation module
模拟仿真模块采用Field ii模拟超声成像过程取得仿真数据,首先模拟现实的超声成像设备设置需要的物理数据,创建发射和接收阵元,另外需根据实际应用场景需要创建虚拟的物体,然后,按扫描线逐条计算并收集回波数据。此模块获得的模拟数据可作为算法成像模块的初始输入数据,以评估此场景下各算法的成像性能,为选择算法提供参考。The simulation module uses the Field ii analog ultrasound imaging process to obtain simulation data. First, simulate the physical data required by the actual ultrasound imaging device setup, create the transmitting and receiving array elements, and additionally create a virtual object according to the actual application scenario, and then press the scan. Lines calculate and collect echo data one by one. The simulation data obtained by this module can be used as the initial input data of the algorithm imaging module to evaluate the imaging performance of each algorithm in this scenario, and provide reference for the selection algorithm.
(3)算法成像模块(3) Algorithm imaging module
算法成像模块包含了多种医学超声MV成像算法,是本系统的核心部分。此模块由初始模块进行调用启动,结合模拟仿真模块获得成像所需的原始信号数据,然后根据MV算法进行像素幅度值计算,取得成像,并将成像结果交给结果显示模块以显示最终的超声图像。对各MV算法进行比较分析等综合研究后,可将此模块主要计算过程分为5个部分,即计算信号延迟,计算协方差矩阵,计算自适应权重,其他改进计算以及计算像素幅度值,这些计算过程在GPU线程块中通过多线程协作完成。其中,改进计算部分为各个MV算法的不同之处,体现了各个算法的核心原理,各个算法的更具体计算原理及其在GPU中的实现将在下面进行阐述。The algorithm imaging module contains a variety of medical ultrasound MV imaging algorithms and is a core part of the system. The module is started by the initial module, and the original signal data required for imaging is obtained by combining the simulation module, and then the pixel amplitude value calculation is performed according to the MV algorithm, the imaging is obtained, and the imaging result is given to the result display module to display the final ultrasound image. . After comprehensive research such as comparative analysis of each MV algorithm, the main calculation process of this module can be divided into five parts, namely, calculating signal delay, calculating covariance matrix, calculating adaptive weight, other improved calculation and calculating pixel amplitude value. The calculation process is done in a GPU thread block by multi-threaded collaboration. Among them, the improved calculation part is the difference of each MV algorithm, which embodies the core principle of each algorithm. The more specific calculation principle of each algorithm and its implementation in GPU will be explained below.
为了方便系统算法的升级及拓展,本模块实现采用策略模式,由初始启动模块根据需要调用,各MV算法独立实现并且可插拔,方便增加、删除或者进行升级改造。并且各个MV算法均可组合不同的M和L(接收信号阵元数量及子阵列阵元数量)等不同参数进行成像,为临床诊断提供更多选择。In order to facilitate the upgrade and expansion of the system algorithm, this module implements the policy mode, which is called by the initial startup module according to the needs. Each MV algorithm is independently implemented and pluggable, which is convenient to add, delete or upgrade. And each MV algorithm can combine different parameters such as M and L (the number of receiving signal array elements and the number of sub-array elements) to provide more choices for clinical diagnosis.
(4)结果显示模块(4) Result display module
算法成像模块经计算得到成像数据后,由结果显示模块进行结果呈现,此模块通过调用Maltab相应函数对数据进行希尔伯特变换、对数压缩、灰阶范围较正等操作后,将图像相关数据输出到对应的横纵坐标轴内,最终,在屏幕上显示出超声成像结果。After the imaging module obtains the imaging data, the result is displayed by the result display module. The module performs the Hilbert transform, the logarithmic compression, the grayscale range correction, etc. after calling the Maltab function. The data is output to the corresponding horizontal and vertical axis, and finally, the ultrasound imaging result is displayed on the screen.
以下对本实例的多种医学超声MV成像算法进行说明,以下只是举例,鉴于篇幅,部分内容如公式的含义并未详述,本领域技术人员可参照现有技术实现或者理解。The following is a description of the various medical ultrasound MV imaging algorithms of the present example. The following is only an example. In view of the space, some of the contents, such as the meaning of the formula, are not described in detail, and those skilled in the art can implement or understand with reference to the prior art.
1、常规MV算法1, the conventional MV algorithm
(1)算法介绍(1) Introduction to the algorithm
根据医学超声成像中最小方差小波束形成算法的发展,最常见的自适应波束形成算法是基于Capon在1969年设计的自适应最小方差(MV)波束形成器。常规MV算法是基于延迟叠加波束形成算法发展而来的,它们有相同的输入输出数据流和相同的延迟叠加处理。最主要的不同是最小方差波束形成算法使用变迹权重自适应输入的超声数据,而延迟叠加波束形成算法不能自适应输入数据的固定的变迹权重。正是这个最主要的区别使最小方差波束形成算法输出图像的质量比延迟叠加算法的高。According to the development of the minimum variance beamforming algorithm in medical ultrasound imaging, the most common adaptive beamforming algorithm is based on the adaptive minimum variance (MV) beamformer designed by Capon in 1969. The conventional MV algorithm is based on a delayed superposition beamforming algorithm that has the same input and output data streams and the same delay superposition process. The main difference is that the minimum variance beamforming algorithm uses apodized weight adaptive input of ultrasound data, while the delayed superposition beamforming algorithm cannot adapt to the fixed apodization weight of the input data. It is this primary difference that makes the quality of the output image of the minimum variance beamforming algorithm higher than that of the delay stacking algorithm.
MV波束形成算法使用了子孔径平均法。一个接收孔径由M个连续的输入数据通道构成并被分成一组由L个连续输入通道组成的子孔径。因此,一个接收孔径由(M‐L+1)个子孔径组成。通过子孔径平均法,可以用以下式子计算像素点p的协方差矩阵R MV(p)。 The MV beamforming algorithm uses a subaperture averaging method. A receive aperture consists of M consecutive input data channels and is divided into a set of sub-apertures consisting of L consecutive input channels. Therefore, one receiving aperture consists of (M‐L+1) sub-apertures. By the subaperture averaging method, the covariance matrix R MV (p) of the pixel point p can be calculated by the following equation.
Figure PCTCN2018113234-appb-000001
Figure PCTCN2018113234-appb-000001
其中x i(p)是一个(L×1)的向量,由第i th子阵列中输入的回波信号数据构成,如,x i(p)代表x(p)中第i th到(i+L-1) th个元素的集合,而x(p)则是一个由与像素点对应的经过延迟之后的信号值构成的一个(L×1)的向量。协方差矩阵R MV(p)的计算完成后,自适应的变迹权重便可通过下式进行估计: Where x i (p) is a (L × 1) vector consisting of echo signal data input in the i th subarray, eg x i (p) represents the i th th to (i) in x(p) +L-1) A set of th elements, and x(p) is a (L × 1) vector composed of delayed signal values corresponding to pixel points. After the calculation of the covariance matrix R MV (p) is completed, the adaptive apodization weight can be estimated by the following formula:
Figure PCTCN2018113234-appb-000002
Figure PCTCN2018113234-appb-000002
因为输入通道中的数据已经过延迟,所以此处a是一个均为1的简单方向向量。最后,像素点p的幅度值可通过下式进行估算:Since the data in the input channel has been delayed, here a is a simple direction vector that is all one. Finally, the amplitude value of pixel p can be estimated by:
Figure PCTCN2018113234-appb-000003
Figure PCTCN2018113234-appb-000003
(2)GPU实现(2) GPU implementation
常规MV算法的GPU实现是其他改进MV算法的基础。其计算网格和线程块大小以二维下标组织,其中,计算网格的X,Y大小正好与成像的扫描线数及每条扫描线上的像素点数对应;线程块中X≥L,Y根据设置的每线程块总线程数与X的大小取得。在启动GPU计算之前,在共享内存中分配存放延迟之后的信号数据、协方差矩阵、权重向量数值及中间值的空间,而原始信号数据通过CPU拷贝存进GPU全局内存中。The GPU implementation of the conventional MV algorithm is the basis for other improved MV algorithms. The calculation grid and the thread block size are organized by a two-dimensional subscript, wherein the X, Y size of the calculation grid corresponds to the number of scanned lines and the number of pixels on each scan line; X≥L in the thread block. Y is obtained according to the set total number of threads per thread block and the size of X. Before starting the GPU calculation, the space of the signal data, the covariance matrix, the weight vector value and the intermediate value after the delay is allocated in the shared memory, and the original signal data is stored in the GPU global memory through the CPU copy.
延迟计算部分根据扫描线位置获取有效的起始和结束阵元,然后通过线程块中的线程并行地计算延迟取得相应信号存放进共享内存中的相应地址,这个过程中,由于阵元位置具有对称性,部分信号通过判断只需进行一次计算过程便可取得相应信号,以此可实现计算量的减少。The delay calculation part obtains valid start and end array elements according to the scan line position, and then calculates the delay in parallel by the thread in the thread block to obtain the corresponding signal and stores the corresponding address in the shared memory. In this process, the position of the array element is symmetric. Sexuality, part of the signal can be obtained by only one calculation process to obtain the corresponding signal, thereby reducing the amount of calculation.
因MV算法的协方差矩阵具有对称性,可只计算对角线上及上三角部分的值,以此也达到节省计算量的目的。计算过程在一个线程块中通过多线程进行并行计算。Since the covariance matrix of the MV algorithm has symmetry, only the values of the diagonal and upper triangular portions can be calculated, thereby achieving the purpose of saving computation. The calculation process performs parallel computation through multiple threads in one thread block.
权重向量计算部分,本系统通过Cholesky分解直接计算出协方差矩阵的逆与方向向量的乘积,以此省去求逆过程,并在一个线程块中通过多线程协作并行计算。In the weight vector calculation part, the system directly calculates the product of the inverse of the covariance matrix and the direction vector by Cholesky decomposition, thereby eliminating the inversion process and parallel computing through multi-thread cooperation in a thread block.
最后的叠加部分因实际阵元数量级较小,因此能过特定线程直接计算即可得。通过以上步骤后,可充分发挥GPU强大的计算性能,而实现高清MV算法的快速成像过程。The final superimposed part is small in magnitude because of the actual array element, so it can be directly calculated by a specific thread. Through the above steps, the powerful computing performance of the GPU can be fully utilized, and the rapid imaging process of the high-definition MV algorithm can be realized.
2、迭代MV算法2. Iterative MV algorithm
(1)算法介绍(1) Introduction to the algorithm
常规MV波束形成算法的核心是噪声协方差矩阵的估计,而造成MV误差的主要是使用样本协方差矩阵代替噪声协方差矩阵的结果。因此,Eng Nai Wee,Ser等人在2011年提出了一种迭代最小方差波束形成(IMV)算法,希望通过多次迭代提高噪声协方差矩阵的估计精度。The core of the conventional MV beamforming algorithm is the estimation of the noise covariance matrix, and the main cause of the MV error is the result of using the sample covariance matrix instead of the noise covariance matrix. Therefore, Eng Nai Wee, Ser et al. proposed an iterative minimum variance beamforming (IMV) algorithm in 2011, hoping to improve the estimation accuracy of the noise covariance matrix by multiple iterations.
在该算法中,常规MV波束形成算法的输出被作为期望信号幅度的预估值:In this algorithm, the output of the conventional MV beamforming algorithm is used as an estimate of the expected signal amplitude:
Figure PCTCN2018113234-appb-000004
Figure PCTCN2018113234-appb-000004
期望信号被从接收信号中分离出来,剩下的是干扰和操声分量,如式(2‐5)所示:The desired signal is separated from the received signal, and the rest is the interference and the acoustic component, as shown in equation (2-5):
Figure PCTCN2018113234-appb-000005
Figure PCTCN2018113234-appb-000005
然后,只需用
Figure PCTCN2018113234-appb-000006
代替x i(p),按常规MV算法的公式计算一个新的波束形成权重矢量,并代入式(3‐3)中最终获得像素点的幅度估计。由于该步骤相当于对干扰噪声分量重复一遍MV优化过程,因此我们称之为二步迭代最小方差(2StgMV)算法。而且这个步骤可以根据需要重复进行。
Then just use
Figure PCTCN2018113234-appb-000006
Instead of x i (p), a new beamforming weight vector is calculated according to the formula of the conventional MV algorithm, and substituted into the equation (3-3) to finally obtain the amplitude estimation of the pixel. Since this step is equivalent to repeating the MV optimization process for the interference noise component, we call it the two-step iterative minimum variance (2StgMV) algorithm. And this step can be repeated as needed.
IMV算法可以显着提高MV算法的对比度,但是迭代过程中的求逆计算会造成很大的计算开销,使之不利于实现算法的实时性。The IMV algorithm can significantly improve the contrast of the MV algorithm, but the inverse calculation in the iterative process will cause a large computational overhead, which is not conducive to real-time performance of the algorithm.
(2)GPU实现(2) GPU implementation
迭代MV算法的计算过程实质上与常规MV算法的一致,只是重复了常规MV算法中求取权重的过程,并在计算过程中减去上一次迭代的幅度估值。因此,实现时通过增加一个变量记录上一次计算得到的幅度值,并在每次读原始信号时减去,其余过程采用常规MV算法的并行计算方案,以此通过进一步的迭代计算便可获得迭代MV算法的像素幅度值。其成像速度相比于常规MV算法取决于希望迭代的次数。The computational process of the iterative MV algorithm is essentially the same as that of the conventional MV algorithm, except that the process of weighting in the conventional MV algorithm is repeated, and the amplitude estimate of the previous iteration is subtracted in the calculation process. Therefore, the amplitude value obtained by the last calculation is recorded by adding a variable, and is subtracted every time the original signal is read. The rest of the process uses the parallel calculation scheme of the conventional MV algorithm, so that iteration can be obtained by further iterative calculation. The pixel amplitude value of the MV algorithm. Its imaging speed is compared to the conventional MV algorithm depending on the number of iterations desired.
3、融合对角加载的MV算法3. Fusion diagonal algorithm for MV loading
(1)算法介绍(1) Introduction to the algorithm
由于频率或到达方向的不准确估计,常规MV波束成形算法的性能会迅速下降。Li等人使用对角加载(DL)的方法来提高MV波束形成算法的鲁棒性。在2005年,Sasso等人将其应用于医学超声成像领域,这也在一定程度上提高了成像分辨率。The performance of conventional MV beamforming algorithms will degrade rapidly due to inaccurate estimates of frequency or direction of arrival. Li et al. use a diagonal loading (DL) approach to improve the robustness of the MV beamforming algorithm. In 2005, Sasso et al. applied it to the field of medical ultrasound imaging, which also improved the imaging resolution to some extent.
对角加载过程是在原矩阵上叠加一定比例的单位阵,如下式所示:The diagonal loading process is to superimpose a certain proportion of the unit matrix on the original matrix, as shown in the following equation:
Figure PCTCN2018113234-appb-000007
Figure PCTCN2018113234-appb-000007
其中δ为对角加载量,trace{}表示矩阵的迹,I表示单位阵。然后,用
Figure PCTCN2018113234-appb-000008
代替R MV(p)按式(3‐2)和式(3‐3)一样进行计算来获得像素点的幅度估计。
Where δ is the diagonal load, trace{} represents the trace of the matrix, and I represents the unit array. Then use
Figure PCTCN2018113234-appb-000008
Instead of R MV (p), the calculation is performed in the same manner as in the equation (3‐2) and the equation (3‐3) to obtain the amplitude estimation of the pixel.
对角加载的含义是在原信号上叠加与信号功率成一定比例的高斯白噪声,增加信号间的独立性。但它在改善鲁棒性的同时,会降低算法的自适应性,造成分辨率的降低,使成像性能趋向于传统延时叠加算法,因此对角加载量不宜过大,应满足:δ<<1/L,且通常取:δ=1/(100L)。The meaning of diagonal loading is to superimpose Gaussian white noise proportional to the signal power on the original signal, increasing the independence between signals. However, while improving the robustness, it will reduce the adaptability of the algorithm, resulting in lower resolution, and the imaging performance tends to the traditional delay superposition algorithm. Therefore, the diagonal loading should not be too large, and should satisfy: δ<< 1/L, and usually takes: δ = 1 / (100L).
(2)GPU实现(2) GPU implementation
融合对角加载的MV算法主要是在常规MV算法得出协方差矩阵后在其上加上一定比例的高斯白噪声,因此依然可沿用前述的常规MV算法GPU并行实现方案,然后,在此基础上,于协方差矩阵计算完成后组织部分线程计算出需要加上的数值,然后加到矩阵对角线上。因叠加过程无访问冲突,因此也可通过线程块中的L个线程进行并行操作以更快完成对角加载的过程,实现快速成像的目的。The MV algorithm combined with diagonal loading mainly adds a certain proportion of Gaussian white noise to the conventional MV algorithm after the covariance matrix is obtained, so the GPU parallel implementation scheme of the conventional MV algorithm can still be used. Then, based on this On the other hand, after the calculation of the covariance matrix is completed, the part of the thread is calculated to calculate the value to be added, and then added to the diagonal of the matrix. Since there is no access conflict in the overlay process, parallel operations can be performed through L threads in the thread block to complete the diagonal loading process faster, and the purpose of fast imaging is achieved.
4、前后向平滑MV算法4, forward and backward smooth MV algorithm
(1)算法介绍(1) Introduction to the algorithm
前后向平滑最小方差(FBMV)波束形成算法是Asl等人针对提高对比度提出的MV算法的改良算法。该算法的核心思想是估计更准确的计算变迹权重所需的协方差矩阵。它使用前向‐后向平滑技术,而不是传统的仅前向空间平滑,从而获得更精确的背景斑点统计特性,并因此提高对比度。The forward and backward smoothed minimum variance (FBMV) beamforming algorithm is an improved algorithm of AsL et al. for the MV algorithm proposed to improve contrast. The core idea of the algorithm is to estimate the more accurate covariance matrix needed to calculate the apodization weights. It uses a forward-backward smoothing technique instead of the traditional forward-only spatial smoothing, resulting in more accurate background speckle statistics and thus improved contrast.
式(3‐1)给出的估计方法可认为是前向空间平滑的估计,记为
Figure PCTCN2018113234-appb-000009
The estimation method given by equation (3‐1) can be considered as an estimate of forward spatial smoothing, which is recorded as
Figure PCTCN2018113234-appb-000009
Figure PCTCN2018113234-appb-000010
Figure PCTCN2018113234-appb-000010
通过式(3‐8)进行计算获得后向空间平滑的估计
Figure PCTCN2018113234-appb-000011
Estimation of backward spatial smoothing by calculation of equation (3‐8)
Figure PCTCN2018113234-appb-000011
Figure PCTCN2018113234-appb-000012
Figure PCTCN2018113234-appb-000012
其中,J表示交换矩阵,即将单位矩阵左右翻转。Where J represents the exchange matrix, that is, the unit matrix is flipped left and right.
进而通过联合前后向空间平滑估计可以获得一个更准确的估计,其表达式如下:Furthermore, a more accurate estimate can be obtained by combining the forward and backward spatial smoothing estimates. The expression is as follows:
Figure PCTCN2018113234-appb-000013
Figure PCTCN2018113234-appb-000013
然后,用
Figure PCTCN2018113234-appb-000014
代替R MV(p)按式(3‐2)和式(3‐3)一样进行计算来获得像素点的幅度估计。这样的平滑过程也使其比常规MV算法具有更强的鲁棒性。
Then use
Figure PCTCN2018113234-appb-000014
Instead of R MV (p), the calculation is performed in the same manner as in the equation (3‐2) and the equation (3‐3) to obtain the amplitude estimation of the pixel. This smoothing process also makes it more robust than conventional MV algorithms.
(2)GPU实现(2) GPU implementation
从算法公式上可看出,前后向平滑MV算法将常规MV算法得出的协方差矩阵后对应于前向空间平滑的估计,而后向空间平滑的数值可在前向估计的相对位置上取得,因此,可在常规MV算法完成其协方差矩阵计算后,再采用一次计算协方差矩阵时的并行方案取得后向平滑的值存储于临时变量中,与此同时,因联合估计的数值为前后向估计的平均,因而数值上是相等的,可在得到两者数值后直接进行平均计算存于矩阵中相应位置。采用此方案可在不增加内存开销的基础上实现很好的并行计算,大大节省了联合协方差矩阵的计算时间。It can be seen from the algorithm formula that the forward-and-forward smoothing MV algorithm corresponds to the forward spatial smoothing estimate obtained by the conventional MV algorithm, and the backward spatial smoothing value can be obtained in the forward estimated relative position. Therefore, after the conventional MV algorithm completes its covariance matrix calculation, the parallel scheme when calculating the covariance matrix is used to obtain the backward smoothed value stored in the temporary variable, and at the same time, the value of the joint estimation is forward and backward. The estimated averages are thus numerically equal, and the average calculation can be performed directly in the corresponding position in the matrix after the values are obtained. This scheme can achieve good parallel computing without increasing memory overhead, which greatly saves the computation time of the joint covariance matrix.
6、融合广义相干因子的MV算法6. MV algorithm combining generalized coherence factors
(1)算法介绍(1) Introduction to the algorithm
为了获得高分辨率并校正由于组织传播中的声速不均匀引起的相位误差,吴文焘等人在2010年提出了融合广义相干因子(GCF)与MV波束形成算法的高分辨率医学超声成像方法。In order to obtain high resolution and correct phase error caused by uneven sound velocity in tissue propagation, Wu Wenzhao et al. proposed a high-resolution medical ultrasound imaging method combining generalized coherence factor (GCF) and MV beamforming algorithm in 2010.
GCF的计算基于聚焦延迟后的多通道数据。首先,将阵元域数据通过傅里叶变换从阵元域变换到波束域:The calculation of GCF is based on multi-channel data after focus delay. First, the array element domain data is transformed from the array element domain to the beam domain by Fourier transform:
Figure PCTCN2018113234-appb-000015
Figure PCTCN2018113234-appb-000015
其中y(m)为变换到波束域后的数据,然后计算各个波束方向的能量,得到相干方向的能量与总能量的比作为GCF的值:Where y(m) is the data after transforming into the beam domain, and then calculating the energy of each beam direction, and obtaining the ratio of the energy of the coherent direction to the total energy as the value of GCF:
Figure PCTCN2018113234-appb-000016
Figure PCTCN2018113234-appb-000016
其中K为控制GCF的低频成分的能量比,通过改变K的数值,可以改变算法的性能。Where K is the energy ratio that controls the low frequency component of GCF. By changing the value of K, the performance of the algorithm can be changed.
为了计算得像素点的幅度值,常规MV算法的计算过程应被完整进行一遍,然后,通过式(3‐12)与GCF结合,从而获得像素点最后的幅度估计。In order to calculate the amplitude value of the pixel, the calculation process of the conventional MV algorithm should be completed once, and then combined with the GCF by the equation (3-12) to obtain the final amplitude estimate of the pixel.
v MV_GCF(p)=c GCF(p)·v MV(p).   (3-12) v MV_GCF (p)=c GCF (p)·v MV (p). (3-12)
这个方法把广义相干系数在相位存在误差时的鲁棒性与MV算法的高分辨率能力结合了起来。This method combines the robustness of the generalized coherence coefficient with phase error and the high resolution capability of the MV algorithm.
(2)GPU实现(2) GPU implementation
融合广义相干因子的MV算法具有与常规MV算法一致的计算像素幅度值的计算过程,因此,常规MV算法的GPU实现方案依然应用于此。然后,在得到像素幅度值之后,对存储于共享内存中的阵元数据进行傅里叶变换,并根据如上算法所述计算出相干因子,最后乘上常规MV算法得到的幅度值。在算法改进的计算部分对于没有读写交联的部分依然可在同一个线程块中通过多个线程并行进行,以此加快完成计算过程。此外,本系统在实现过程中,也尽量采用更少计算量的等效替换计算或省去不必要的计算,以进一步加速成像速度。The MV algorithm combining the generalized coherence factor has a calculation process for calculating the pixel amplitude value consistent with the conventional MV algorithm. Therefore, the GPU implementation scheme of the conventional MV algorithm is still applied thereto. Then, after obtaining the pixel amplitude value, Fourier transform is performed on the array metadata stored in the shared memory, and the coherence factor is calculated according to the above algorithm, and finally the amplitude value obtained by the conventional MV algorithm is multiplied. In the calculation part of the algorithm improvement, the part without read-write cross-linking can still be performed in parallel in the same thread block through multiple threads, thereby speeding up the calculation process. In addition, in the implementation process, the system also tries to use less equivalent calculation of equivalent replacement calculation or unnecessary calculation to further accelerate the imaging speed.
7、基于特征空间处理的MV算法7. MV algorithm based on feature space processing
(1)算法介绍(1) Introduction to the algorithm
最小方差波束形成算法能在一定程度上改善图像的分辨率,但不能显著提高图像的对比度。为此,Asl等人提出了基于特征空间处理的最小方差(ESBMV)波束形成算法,ESBMV算法利用协方差矩阵的特征结构来增强常规MV算法的性能,它可以在保持主瓣信号的同时降低旁瓣幅度,从而提高成像质量。The minimum variance beamforming algorithm can improve the resolution of the image to a certain extent, but can not significantly improve the contrast of the image. To this end, Asl et al. proposed a minimum variance (ESBMV) beamforming algorithm based on feature space processing. The ESBMV algorithm uses the feature structure of the covariance matrix to enhance the performance of the conventional MV algorithm, which can reduce the main lobe signal while reducing the side. The amplitude of the flap improves imaging quality.
ESBMV算法在计算变迹权重之前的步骤与常规MV算法一样。然后,协方差矩阵的特征分解可以表示为:The steps of the ESBMV algorithm before calculating the apodization weight are the same as the conventional MV algorithm. Then, the eigendecomposition of the covariance matrix can be expressed as:
Figure PCTCN2018113234-appb-000017
Figure PCTCN2018113234-appb-000017
此处Λ=diag(λ 12,…,λ L),其中λ 1≥λ 2≥…≥λ L为协方差矩阵的特征值;U=[v 1,v 2,…,v L],v i为与λ i对应的特征向量。
Figure PCTCN2018113234-appb-000018
为信号子空间,由N sig个较大特征值对应的特 征向量组成的,而
Figure PCTCN2018113234-appb-000019
则为噪声子空间。N sig的取值决定了波束形成方法保持主瓣信号和降低旁瓣信号的能力,通常用大于最大特征值α(0.1≥α≥.5)倍或大于最小特征值β(0.1≥β≥.5)倍的特征向量个数决定。
Here Λ=diag(λ 12 ,...,λ L ), where λ 1 ≥λ 2 ≥...≥λ L is the eigenvalue of the covariance matrix; U=[v 1 ,v 2 ,...,v L ], v i is a feature vector corresponding to λ i .
Figure PCTCN2018113234-appb-000018
a signal subspace consisting of N sig eigenvectors corresponding to larger eigenvalues, and
Figure PCTCN2018113234-appb-000019
Then it is the noise subspace. The value of N sig determines the ability of the beamforming method to maintain the main lobe signal and reduce the side lobe signal, usually greater than the maximum eigenvalue α (0.1 ≥ α ≥ 5.5) times or greater than the minimum eigenvalue β (0.1 ≥ β ≥. 5) The number of feature vectors is determined by multiples.
将常规MV算法得到的加权值投影到特征空间法得到的信号子空间,即可得到ESBMV的加权值为:The weighted value obtained by the conventional MV algorithm is projected to the signal subspace obtained by the feature space method, and the weighted value of the ESBMV is obtained:
Figure PCTCN2018113234-appb-000020
Figure PCTCN2018113234-appb-000020
由此得到的ESBMV波束形成的最终输出为:The resulting output of the resulting ESBMV beamforming is:
Figure PCTCN2018113234-appb-000021
Figure PCTCN2018113234-appb-000021
与常规MV波束形成相比,ESBMV能够有效对比度和信噪比。然而,它的缺陷在于当噪声超过期望信号的强度时,该算法会将噪声认作期望信号,从而可能导致完全错误的结果。Compared to conventional MV beamforming, ESBMV is capable of effective contrast and signal to noise ratio. However, its drawback is that when the noise exceeds the strength of the desired signal, the algorithm will recognize the noise as the desired signal, which may result in a completely erroneous result.
(2)GPU实现(2) GPU implementation
基于特征空间处理的MV算法比常规MV算法多了一步计算量较大的特征空间分解过程。基于精度和并行性的考虑,这里采用Jocobi分解方法进行特征分解,实现依然对无访问冲突的部分尽量在线程块中通过多线程并行进行。为了进行线程间的并行协作,需要在原有MV算法的基础上增加用于存储特征分解过程中间值的共享内存,这里主要用于存储特征向量,特征值可存储于最后计算已无需用到的已经分配的共享内存中。因设置共享内存的大小会限制实际GPU中可并行运行的线程块数,因此为了节省内存,实现过程中,根据计算过程的对称性,实际只需增加一半矩阵的容量,需用到其数据时再通过下标变换计算取得相应的数据,这样不仅可节省共享内存的使用,增加并行的线程块数,还可减少将近一半的计算量,从而达到尽量快速成像的目的。The MV algorithm based on feature space processing has one more computational feature space decomposition process than the conventional MV algorithm. Based on the consideration of precision and parallelism, the Jocobi decomposition method is used for feature decomposition. The part that still has no access conflict is paralleled by multi-thread in the thread block as much as possible. In order to perform parallel cooperation between threads, it is necessary to add shared memory for storing the intermediate value of the feature decomposition process based on the original MV algorithm. Here, it is mainly used to store feature vectors, and the feature values can be stored in the last calculation that has not been used yet. Allocated in shared memory. Because the size of the shared memory is limited, the number of thread blocks that can be run in parallel in the actual GPU is limited. Therefore, in order to save memory, in the implementation process, according to the symmetry of the calculation process, it is only necessary to increase the capacity of the matrix by half, and when the data needs to be used. Then the corresponding data is obtained by subscript conversion calculation, which not only saves the use of shared memory, increases the number of parallel thread blocks, but also reduces the calculation amount by nearly half, so as to achieve the purpose of imaging as fast as possible.
8、特征空间与符号相干系数融合的MV算法8. MV algorithm for feature space and symbol coherence coefficient fusion
(1)算法介绍(1) Introduction to the algorithm
图像分辨率主要由主瓣宽度决定,而ESBMV波束形成得到图像的分辨率几乎与常规MV算法近似相同,为了在提高图像对比度的同时进一步提高图像分辨率,刘廷平等人在2015年把符号相干系数引入到ESBMV算法中,提出了特征空间与符号相干系数(SCF)融合的波束形成算法。The resolution of the image is mainly determined by the width of the main lobe, and the resolution of the image obtained by ESBMV beamforming is almost the same as that of the conventional MV algorithm. In order to improve the image contrast while further improving the image resolution, Liu Tingping people cohered the symbols in 2015. The coefficients are introduced into the ESBMV algorithm, and a beamforming algorithm combining feature space and symbol coherence coefficient (SCF) is proposed.
SCF可以被认为是波束形成设备的一个非线性函数。它只需较少的硬件资源并且能被快速集成到波束形成设备中,可以通过式(3‐16)计算其值:The SCF can be considered as a nonlinear function of the beamforming device. It requires less hardware resources and can be quickly integrated into the beamforming device, and its value can be calculated by equation (3-16):
Figure PCTCN2018113234-appb-000022
Figure PCTCN2018113234-appb-000022
其中,b i(p)可以通过式(3‐17)获得: Where b i (p) can be obtained by the formula (3-17):
Figure PCTCN2018113234-appb-000023
Figure PCTCN2018113234-appb-000023
而其他的计算过程与ESBMV算法一致,只是其最后的输出通过式(2‐18)获得:The other calculations are consistent with the ESBMV algorithm, except that its final output is obtained by equation (2-18):
v ESBMV_SCF(p)=c SCF(p)·v ESBMV(p).       (3-18) v ESBMV_SCF (p)=c SCF (p)·v ESBMV (p). (3-18)
这个方法把相干系数相对于相位误差的稳健性与ESBMV的高分辨率特性结合了起来。This method combines the robustness of the coherence coefficient with respect to the phase error with the high resolution of the ESBMV.
(2)GPU实现(2) GPU implementation
特征空间与符号相干系数融合的MV算法的计算过程主要是在基于特征空间处理的MV算法得到幅度值后再乘上一个符号相干系数,因此,其GPU实现方案与基于特征空间处理的MV算法一致,只需在最后根据如前所述公式多进行一步符号相干系数的计算,此过程与融合广义相干因子的MV算法一样,通过线程并行、替换计算等尽量省去不必要的计算,以加速成像速度。The computational process of MV algorithm with feature space and symbol coherence coefficient is mainly based on the MV algorithm based on feature space processing and then multiplied by a symbol coherence coefficient. Therefore, its GPU implementation is consistent with the MV algorithm based on feature space processing. In the end, only one step of the symbol coherence coefficient is calculated according to the formula as described above. This process is the same as the MV algorithm which combines the generalized coherence factor, and the unnecessary calculation is saved by thread parallelism, replacement calculation, etc. to accelerate the imaging. speed.
该系统通过使用Field II仿真器来模拟超声通道数据样本,从而进行一系列相关实验,得到此系统的成像性能。以下仿真模拟了一个如图2(a)所示的处于散斑中的囊泡虚像作为成像场景。实验采用Field II模拟器来模拟超声信道的回波数据样本,其仿真参数设置见表1。The system uses a Field II simulator to simulate ultrasound channel data samples to perform a series of related experiments to obtain the imaging performance of the system. The following simulation simulates a vesicle virtual image in a speckle as shown in Fig. 2(a) as an imaging scene. The field II simulator was used to simulate the echo data samples of the ultrasonic channel. The simulation parameters are set in Table 1.
表1实验中Field II模拟参数的设置Table 1 Setting of Field II simulation parameters in the experiment
Figure PCTCN2018113234-appb-000024
Figure PCTCN2018113234-appb-000024
前述各MV算法都通过实验进行分析,其中每个算法均作为一个波束形成器进行编程实现,并且将像素计算过程并行化以节省程序运行时间。而为了获得具有比较意义的结果,每个算法的参数均被设置为其常用值,例如,子孔径通道的数目被设置为32。测试所得结果显示在图2(b)~(h)中,所有图像显示的动态范围均为60dB。对比这些图可看出,各种波束形成器的成像清晰度都足以辨别出目标,体现了这些MV算法高清成像的能力,但不同算法的对比度在此成像场景中还是有一定差别的,因此,临床使用时需要根据实际需求选择不同的算法进行成像。波束成形算法是医疗超声成像技术中的关键部分,MV自适应波束成形算法由于利用了输入回波数据的实时统计特性,因此,与传统的DAS波束成形算法相比,其具有更高的输出成像质量。而本系统通过GPU强大的高性能计算能力实现多种高清MV算法的快速成像,可为临床诊断提供快速有效的成像依据。Each of the aforementioned MV algorithms is analyzed experimentally, each of which is programmed as a beamformer and parallelizes the pixel calculation process to save program run time. In order to obtain a comparatively significant result, the parameters of each algorithm are set to their usual values, for example, the number of subaperture channels is set to 32. The results of the test are shown in Figures 2(b) to (h), and all images show a dynamic range of 60 dB. Comparing these figures, it can be seen that the imaging sharpness of various beamformers is sufficient to distinguish the target, which embodies the ability of these MV algorithms for high-definition imaging, but the contrast of different algorithms still has some differences in this imaging scene. In clinical use, different algorithms need to be selected according to actual needs for imaging. The beamforming algorithm is a key part of medical ultrasound imaging technology. The MV adaptive beamforming algorithm utilizes the real-time statistical characteristics of the input echo data, so it has higher output imaging than the traditional DAS beamforming algorithm. quality. The system realizes rapid imaging of a variety of high-definition MV algorithms through the powerful high-performance computing power of the GPU, which can provide a fast and effective imaging basis for clinical diagnosis.

Claims (6)

  1. 基于GPU的多种MV高清算法快速医学超声影像系统,其特征在于包括初始启动模块、模拟仿真模块、算法成像模块和结果显示模块;其中,初始启动模块完成系统初始化设置后调用算法成像模块进行成像,模拟仿真模块作为一个辅助模块产生模拟数据供其他模块使用,算法成像模块是整个系统的核心模块,接收来自初始启动模块的参数设置与模块仿真模块或数据采集设备的数据进行成像计算,而结果显示模块则对其他模块的结果进行最后的处理与显示,各个模块之间既独立工作又相互协作,最终实现多种MV算法的快速成像功能。GPU-based MV high-definition algorithm rapid medical ultrasound imaging system, which is characterized by comprising an initial startup module, an analog simulation module, an algorithm imaging module and a result display module; wherein, after the initial startup module completes the system initialization setting, the algorithm imaging module is called to perform imaging. The simulation module is used as an auxiliary module to generate analog data for use by other modules. The algorithm imaging module is the core module of the whole system, and receives the parameter settings from the initial startup module and the data of the module simulation module or the data acquisition device for imaging calculation, and the result The display module performs final processing and display on the results of other modules, and each module works independently and cooperates with each other, and finally realizes rapid imaging functions of various MV algorithms.
  2. 根据权利要求1所述的基于GPU的多种MV高清算法快速医学超声影像系统,其特征在于初始启动模块主要进行系统启动时需要的初始化工作,包括初始化参数、设置成像场景、设置启用的算法、评估指标及图像显示参数,其中大多数初始化设置提供了与传统超声成像系统一致的选项,而对于成像算法的设置,本系统则提供了多种高清成像算法的选择,包括常规MV算法、迭代MV算法、融合对角加载的MV算法、前后向平滑MV算法、融合广义相干因子的MV算法、基于特征空间处理的MV算法和特征空间与符号相干系数融合的MV算法。The GPU-based MV high-definition algorithm rapid medical ultrasound imaging system according to claim 1, wherein the initial startup module mainly performs initialization work required during system startup, including initializing parameters, setting an imaging scenario, setting an enabled algorithm, Evaluation indicators and image display parameters, most of which provide the same options as traditional ultrasound imaging systems, and for imaging algorithm settings, the system provides a variety of high-definition imaging algorithms, including conventional MV algorithms, iterative MV Algorithm, FFT algorithm with diagonal loading, forward and backward smooth MV algorithm, MV algorithm with generalized coherence factor, MV algorithm based on feature space processing and MV algorithm with feature space and symbol coherence coefficient fusion.
  3. 根据权利要求1所述的基于GPU的多种MV高清算法快速医学超声影像系统,其特征在于模拟仿真模块采用Field II模拟超声成像过程取得仿真数据,首先模拟现实的超声成像设备设置需要的物理数据,创建发射和接收阵元,另外需根据实际应用场景需要创建虚拟的物体,然后,按扫描线逐条计算并收集回波数据。The GPU-based MV high-definition fast medical ultrasound imaging system according to claim 1, wherein the simulation module uses the Field II analog ultrasound imaging process to obtain simulation data, and first simulates physical data required for the actual ultrasound imaging device setting. Create a transmit and receive array element. In addition, you need to create a virtual object according to the actual application scenario. Then, calculate and collect the echo data one by one according to the scan line.
  4. 根据权利要求1所述的基于GPU的多种MV高清算法快速医学超声影像系统,其特征在于算法成像模块包含常规MV算法、迭代MV算法、融合对角加载的MV算法、前后向平滑MV算法、融合广义相干因子的MV算法、基于特征空间处理的MV算法和特征空间与符号相干系数融合的MV算法。The GPU-based MV high-definition fast medical ultrasound imaging system according to claim 1, wherein the algorithm imaging module comprises a conventional MV algorithm, an iterative MV algorithm, a fused diagonally loaded MV algorithm, a forward and backward smooth MV algorithm, MV algorithm combining generalized coherence factor, MV algorithm based on feature space processing and MV algorithm combining feature space and symbol coherence coefficient.
    算法成像模块由初始模块进行调用启动,通过数据采集设备或模拟仿真模块获得成像所需的原始信号数据,然后根据MV算法进行像素幅度值计算,取得成像,并将成像结果交给结果显示模块以显示最终的超声图像。The algorithm imaging module is started by the initial module, and the original signal data required for imaging is obtained by the data acquisition device or the simulation module, and then the pixel amplitude value is calculated according to the MV algorithm, the imaging is obtained, and the imaging result is given to the result display module. The final ultrasound image is displayed.
  5. 根据权利要求4所述的基于GPU的多种MV高清算法快速医学超声影像系统,其特征在于将算法成像模块主要计算过程分为计算信号延迟,计算协方差矩阵,计算自适应权重,计 算优化算子和计算像素幅度值5个部分,这些计算过程在GPU线程块中通过多线程协作完成。The GPU-based MV high-definition fast medical ultrasound imaging system according to claim 4, wherein the main calculation process of the algorithm imaging module is divided into calculating signal delay, calculating a covariance matrix, calculating an adaptive weight, and calculating an optimization calculation. The sub- and calculated pixel amplitude values are 5 parts, and these calculations are done by multi-threaded cooperation in the GPU thread block.
    算法成像模块可根据实际诊断场景需求经由初始启动模块进行设定后调用,采用策略模式对各MV高清成像算法进行封装,并实现可插拔式调用,可方便地进行增加、删除或升级操作。The algorithm imaging module can be called after the initial startup module is set according to the actual diagnosis scenario requirement, and the MV high-definition imaging algorithm is encapsulated by the strategy mode, and the pluggable call is realized, and the addition, deletion or upgrade operation can be conveniently performed.
  6. 根据权利要求4所述的基于GPU的多种MV高清算法快速医学超声影像系统,其特征在于结果显示模块对算法成像模块的计算结果进行进一步的处理后将成像结果输出到显示器中进行显示;超声成像在经过波束形成后,通常还会进行包络检波、对数压缩和都灰阶范围校正,结果显示模块通过调用Maltab相应函数对数据进行希尔伯特变换、对数压缩、灰阶范围校正操作后,将图像相关数据输出到对应的横纵坐标轴内,最终在屏幕上显示出超声成像结果;同时,结果显示模块也会收集实际诊断场景的相关信息,并将其显示在显示器的合适区域中,为使用人员提供全面详尽的信息供诊断参考。The GPU-based MV high-definition fast medical ultrasound imaging system according to claim 4, wherein the result display module further processes the calculation result of the algorithm imaging module, and outputs the imaging result to the display for display; After beamforming, the imaging usually performs envelope detection, logarithmic compression, and grayscale range correction. The result display module performs Hilbert transform, logarithmic compression, and grayscale range correction by calling the corresponding function of Maltab. After the operation, the image related data is output to the corresponding horizontal and vertical axis, and finally the ultrasonic imaging result is displayed on the screen; at the same time, the result display module also collects relevant information of the actual diagnosis scene and displays it on the display suitable In the area, the user is provided with comprehensive and detailed information for diagnostic reference.
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