WO2019154414A1 - Use of substance for inhibiting or eliminating trabd in hiv reagent and screening method - Google Patents

Use of substance for inhibiting or eliminating trabd in hiv reagent and screening method Download PDF

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WO2019154414A1
WO2019154414A1 PCT/CN2019/074773 CN2019074773W WO2019154414A1 WO 2019154414 A1 WO2019154414 A1 WO 2019154414A1 CN 2019074773 W CN2019074773 W CN 2019074773W WO 2019154414 A1 WO2019154414 A1 WO 2019154414A1
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cells
hiv
protein
trabd2a
infected
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PCT/CN2019/074773
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French (fr)
Chinese (zh)
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乔莹
梁国新
尚红
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中国医科大学附属第一医院
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/18Antivirals for RNA viruses for HIV
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage

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  • the present invention relates to a technique and related method for detecting or eliminating cells infected with a virus such as HIV, and particularly relates to a reagent and/or a drug for detecting or eliminating cells of an HIV reservoir using a substance capable of inhibiting or eliminating TRABD (TraB domain-containing protein). And methods of screening for such materials.
  • a virus such as HIV
  • TRABD TraB domain-containing protein
  • HIV infection has become a major threat to global human health and cannot be cured.
  • Current anti-HIV therapies such as cocktail therapy, can only effectively control the active replication of the virus, but not radically. Even if the HIV virus in the body is reduced to an undetectable level by joint antiviral therapy, the virus will rebound once the drug is stopped. In the process of rebound, there is a group of cells that are infected with HIV but do not release HIV, because these cells are not isolated or cleared in current anti-HIV therapies. Therefore, there is a need to find effective and safe detection methods and methods for such cells.
  • HIV reservoir cells include peripheral blood cells, such as CD4 + T cells, and may also be NK cells, brain cells, and the like.
  • the existing detection methods basically activate the HIV storage cells under laboratory conditions, for example, by adding substances such as phytohemagglutinin (PHA) to activate the HIV storage cells, and actively sterilizing the cells, and Progeny virus cells are released in large quantities to detect the amount of virus released and estimate the approximate stock of HIV reservoir cells.
  • PHA phytohemagglutinin
  • the disadvantage of this detection method is that (1) it cannot be standardized and quantified. (2) Once the HIV storage cell is activated, it can promote the release of the virus, which has already lost important physiological characteristics of the HIV storage cell. Therefore, it releases the virus and does not have the characteristics of a latent virus.
  • the field of shock therapy (Shock & Kill) as the basic treatment principle is widely studied in the international theory. Similar to the existing detection methods, in the Shock&Kill treatment principle, it is first necessary to activate the /Shock HIV reservoir cells, and then the Killer CD8 + T cells discover and remove the original HIV-infected CD4 + T that is activated after the virus is released. Repository cells.
  • the key problem currently encountered is that activation of HIV-infected CD4 + T reservoir cells activates the entire body's immune system. Therefore, if the current activator is used for Shock & Kill treatment, the patient will be immune to disorder, causing an immune storm or even fatal. Therefore, Shock&Kill's therapy has only succeeded in basic experiments, but it has not been able to enter clinical treatment.
  • TRABD domain-containing protein 2A There are three subclasses of TRABD domain-containing protein 2A. Prior to the present invention, only TRABD2A-203 was reported to inhibit the expression of Wnt signaling in cells, and none of TRABD2A-201 and TRABD2A-202. A report on information such as its function.
  • the present invention provides the use of related substances for detecting and resecting HIV storage cells, by treating HIV storage cells to detect and clear the cells, and to provide screening for clearance of cellular material in the HIV reservoir. Methods.
  • the invention provides the use of a substance for the preparation of an agent and/or a medicament for detecting or eliminating HIV infected cells, characterized in that the substance is capable of inhibiting human TRABD protein activity or clearing human TRABD protein.
  • the human TRABD protein described above is TRABD2A.
  • the human TRABD2A protein may be selected from the TRABD2A-201 protein, and the amino acid sequence of the TRABD2A-201 protein is shown in SEQ ID NO. It is also preferred to use the TRABD2A-202 protein, and the amino acid sequence of the TRABD2A-202 protein is shown in SEQ ID NO.
  • such a substance for preparing an agent for detecting or eliminating HIV-infected cells may be selected from a small molecule compound, a metalloproteinase inhibitor, or a human TRABD protein-specific antibody.
  • the small molecule compound described above is capable of competing with Mn 2+ for binding to a human TRABD protein.
  • the above small molecule compound is a metal ion compound not containing Mn 2+ .
  • the metal ion compound is a metal ion compound containing Ni 2+ , Co 2+ or Zn 2+ .
  • the above metalloproteinase inhibitor is a divalent metal chelating agent, more preferably 1,10-phenanthroline.
  • the above-described substance for preparing an agent for detecting or eliminating HIV-infected cells removes human TRABD protein on the cell surface by an RNAi method. More preferably, the substance is siRNA or shRNA.
  • the siRNA described above transfects the cells.
  • the siRNA described above is transfected into the cells by electroporation or tandem.
  • the shRNA is transfected into the cell.
  • the invention also provides the use of a vector for the preparation of an agent and/or a medicament for detecting or eliminating HIV infected cells, characterized in that the vector comprises the above-mentioned reagents for preparing cells for detecting or eliminating HIV infection and/or The substance of the drug.
  • the present invention also provides a method for detecting or eliminating HIV-infected cells, the method comprising: inhibiting human TRABD protein activity in the cells or clearing human TRABD protein in the cells, detecting HIV virus released by the cells for detection And/or eliminate the cells.
  • the method treats said cells using any of the reagents described above for the preparation of cells for detecting or eliminating HIV infection.
  • the cells are HIV depot cells, including but not limited to HIV-infected CD4 + T cells, further, HIV-infected resting CD4 + T cells, and may also be HIV-infected peripheral blood cells, NK Cells, brain cells.
  • HIV depot cells including but not limited to HIV-infected CD4 + T cells, further, HIV-infected resting CD4 + T cells, and may also be HIV-infected peripheral blood cells, NK Cells, brain cells.
  • the invention also provides the use of a substance for the preparation of an agent for increasing the ability of a cell to resist HIV and/or SIV infection or for reducing the release of HIV and/or SIV progeny virus by an infected cell, characterized in that the substance is an expression plasmid for TRABD protein. .
  • the expression plasmid of the above TRABD protein is an expression plasmid of TRABD2A protein.
  • the expression plasmid of the above TRABD2A protein is an expression plasmid of TRABD2A protein of human, primate or mammalian.
  • the expression plasmid of the above TRABD protein may also be an expression plasmid of the TRABD2B protein.
  • the expression plasmid of the above TRABD2B protein is an expression plasmid of TRABD2B protein of human, primate or mammalian.
  • the above cells are cells that have been infected with HIV and/or SIV.
  • the above cells are CD4 + T cells that have been infected with HIV and/or SIV.
  • the invention also provides the use of a vector for the preparation of an agent for increasing the ability of a cell to resist HIV and/or SIV infection or for reducing the release of HIV and/or SIV progeny virus by an infected cell, characterized in that the carrier comprises the above-described preparation test. Or a substance that removes reagents from HIV-infected cells.
  • the present invention also provides a method of screening for a substance capable of scavenging or detecting cells infected with HIV and/or SIV, the method comprising screening for a substance capable of inhibiting TRABD protein activity or scavenging TRABD protein.
  • the above substances are capable of inhibiting TRABD protein activity in humans, primates or mammals, or scavenging human, primate or mammalian TRABD proteins.
  • the above method comprises performing a cell assay and/or an animal assay to screen for a substance capable of inhibiting TRABD protein activity or clearing TRABD protein.
  • the macaques are used in the above methods for the cell experiments and/or animal experiments.
  • the present invention inhibits or eliminates the TRABD2A protein of HIV-1 cells infected with HIV-1 and/or HIV-2 by using related substances, so that these HIV storage cells release a large amount of HIV progeny virus, thereby enabling These cells are tested.
  • the present invention can also promote the release of HIV virus from HIV storage cells by inhibiting or eliminating the above-mentioned human TRABD2A protein by using related replication, thereby enabling these cells to be specifically recognized by the human immune system (such as CD8 + T and other Killer cells). Or related antiviral drugs are identified to achieve the purpose of clearing HIV repository cells for further treatment of HIV-1 and/or HIV-2 infection.
  • the present invention can also inhibit the replication of HIV-1 and/or HIV-2 virus in infected cells by increasing the expression of TRABD2A protein or TRABD2B protein (TraB domain-containing protein 2B) in infected cells. And released.
  • the invention also provides methods of screening for clearance of cellular material in an HIV depot.
  • HIV has no animal model, and mice cannot be infected with HIV, so it is equivalent to HIV research work, and there is no animal model.
  • researchers have used SIV to infect macaques (Macaque) and established similar AIDS symptoms, making it the only living laboratory to replace HIV.
  • TRABD can also fight SIV in macaque cells. Therefore, it is possible to study the effects of these substances on the clearance of human HIV reservoir cells and to adjust the symptoms of HIV infection by studying the effects of different substances on rhesus monkey TRABD infected with SIV and adjusting related symptom manifestations.
  • This provides an effective high-throughput method for screening HIV and SIV drugs.
  • Orangutans can be infected with HIV. With the deepening of research and the development of gorilla clinical symptoms, gorillas have the potential to become experimental models of HIV animals.
  • HIV storage cells are surface-specific and contain a large amount of cell membrane metalloproteinase human TRABD2A protein relative to cells that are capable of being produced by viral infection and releasing HIV-1 and/or HIV-2 viruses.
  • the TRABD2A protein prevents the release of the virus, ie the TRABD2A protein is responsible for the minimal release of the virus from the HIV reservoir cells.
  • TRABD needs to bind manganese ions to remove the viral capsid protein, that is, it has two active centers, one center is bound to ions, such as Mn 2+ ; the other center is bound to viral Gag protein molecules.
  • the present invention employs TRABD antibodies, metalloproteinase inhibitors, such as 1,10-phenanthroline, or other small molecule compounds that compete with Mn 2+ for binding to the TRABD2A protein, such as metal ion Co 2
  • TRABD2A protein such as metal ion Co 2
  • the inhibition of TRABD2A protein activity by + , Ni 2+ or Zn 2+ will cause the HIV reservoir cells to also release a large amount of virus.
  • small molecules that bind to TRABD are able to achieve viral release for therapeutic purposes.
  • the above small molecule compound has substantially the same binding ability and activity inhibiting ability as TRABD2A-201, TRABD2A-202, and TRABD2A-203, which are different subclasses of TRABD2A.
  • RNAi RNAi-201, TRABD2A-202 and TRABD2A-203. This allows HIV reservoir cells to be specifically detected and recognized and cleared in the body by the immune system or related antiviral drugs.
  • the TRABD2B protein also has a similar function as the TRABD2A protein. That is, TRABD2B protein can also prevent the replication and release of lentiviruses such as HIV-1, HIV-2 and SIV. Moreover, similar to the TRABD2A protein, the antiviral activity of the TRABD2B protein is also inhibited by TRABD antibodies, metalloproteinase inhibitors, and metal ions Co 2+ , Ni 2+ , Zn 2+ , and other small molecules capable of binding to the TRABD2B protein. . Therefore, the entire TraB family is likely to have similar effects of inhibiting viral replication and release.
  • the method of the present invention Compared with the existing detection method, a method of detecting the amount of the HIV storage cell by adding a substance such as a plant lectin that activates T cells, thereby causing the HIV storage cell to be activated and starting to release the progeny virus, the method of the present invention
  • the advantage is that it can promote the release of a large number of progeny viruses without activating the HIV storage cells, thereby providing the ability to detect these cells under physiological conditions, and the obtained test data has clinical indicators, which are more sensitive and precise, and provide clinical guidance. Medication is more valuable.
  • the present invention proposes a new detection standard, that is, extracting 5-10 ml of peripheral blood of a virus latent patient, extracting peripheral blood mononuclear cell PBMCs, or CD4 + T reservoir cells, and treating with TRABD inhibitor for 12-24 hours, can be detected.
  • the medium supernatant has an infectious viral particle count to determine the number of HIV-infected CD4 + T reservoir cells in different patients.
  • the detection method can shorten the HIV detection window period: after the early infection of the human body, the virus is not detected in the blood, and it takes one to several months to detect the antibody in the blood.
  • HIV infection can detect a small amount of infectious virus at the cell level at an early stage, which provides a guarantee for early detection of HIV infection and early treatment of HIV.
  • the present invention also finds that as long as the antiviral activity of the TRABD2A protein is inhibited in the HIV reservoir cells, the latent virus can be packaged, released from these cells, and presented with a viral antigen on the surface of the HIV storage cell. It promotes the specific recognition of Killer cells such as CD8 + T, and clears these cells, which can achieve the purpose of clearing the HIV storage cells and completely curing the virus infection. At the same time, this process of activating latent viruses and killing HIV storage cells does not require cell activation, so it fully satisfies shock therapy (Shock & Kill) and can enter clinical treatment.
  • shock therapy shock & Kill
  • the present invention has an advantage in that it does not cause an activation of the entire human immune system due to the need to activate the HIV reservoir cells, and may cause adverse consequences for the death of the patient, relative to the Shock & kill treatment method which is currently under study. Therefore, the strategy for treating HIV reservoir cells in the present invention is defined as compression therapy (Push & Kill).
  • the present invention can also directly inhibit the virus in the cells by enhancing the expression of TRABD. freed. For example, it is possible to inhibit the production of intracellular viruses by expression of eukaryotic cells of the TRABD gene.
  • Figure 1-1 Comparison of the content of HIV-1 in the supernatant after transfection of 293T cells with the TRABD2A protein expression vector in Example 1.
  • Figure 1-2 Comparison of p24 content after transfection of 293T cells with TRABD2A protein expression vector in Example 1.
  • Figure 1-3 Comparison of virion-related genomic RNA content of 293T cells transfected with TRABD2A protein expression vector in Example 1.
  • Figure 1-4 Comparison of HIV Gag RNA content after transfection of 293T cells using the TRABD2A protein expression vector in Example 1.
  • Figure 1-5 Comparison of HIV-1 Gag, gp120, TRABD2A protein and glyceraldehyde phosphate dehydrogenase (GAPDH) after transfection of 293T cells with TRABD2A protein expression vector in Example 1.
  • GPDH glyceraldehyde phosphate dehydrogenase
  • Figure 1-6 Comparison of HBV virus content in supernatant after transfection of 293T cells with TRABD2A protein expression vector in Example 1.
  • Figure 1-7 Comparison of TRABD2A and glyceraldehyde phosphate dehydrogenase after transfection of 293T cells using the TRABD2A protein expression vector in Example 1.
  • Figure 2-1 Comparison of the content of HIV-1 in the supernatant after transfection of 293T cells with various TRABD protein expression vectors in Example 2.
  • Figure 2-2 Comparison of exogenous TRABD protein and glyceraldehyde phosphate dehydrogenase after transfection of 293T cells using various TRABD protein expression vectors in Example 2.
  • Figure 3-1 Comparison of the contents of VSV-G, HIV-1 NL4.3 or -89.6 in the supernatant after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
  • Figure 3-2 Comparison of HIV Gag RNA content after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
  • Figure 3-3 Comparison of HIV-1 BH-10 content in the supernatant after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
  • Figure 3-4 Comparison of HIV-1 BaL content in supernatants after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
  • Figure 3-5 Comparison of HIV-1 NL4.3 content in supernatant after transfection of 293T cells with TRABD 2B protein expression vector in Example 3.
  • Figure 3-6 Comparison of HIV Gag RNA content after transfection of 293T cells using the TRABD 2B protein expression vector in Example 3.
  • Figure 3-7 TRABD2B, Gag and glyceraldehyde phosphate dehydrogenase content profiles after transfection of 293T cells with the TRABD 2B protein expression vector in Example 3.
  • Figure 4-1 Comparison of CCR5 HIV-1 AD8 , HIV-1 89.6 , and SIV mac239 in the supernatant after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 4.
  • Figure 4-2 Comparison of HIV-2 ST levels in supernatants after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 4.
  • Figure 5-1 Effect of 1,10-phenanthroline on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 5 and western blotting (western blotting) Blot) map.
  • Figure 5-2 Effect of Co 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
  • Figure 5-3 Effect of Ni 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
  • Figure 5-4 Effect of Mn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
  • Figure 5-5 Effect of Zn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
  • Figure 5-6 Effect of Co 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
  • Figure 5-7 Effect of Ni 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
  • Figure 5-8 Effect of Mn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
  • Figure 5-9 Effect of Zn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
  • Figure 6 The supernatant obtained by treating the CD4 + T reservoir cells of HIV-1 and HIV-2 with a specific monoclonal antibody of Ni 2+ , Co 2+ , a divalent metal chelating agent, and TRABD2A protein in Example 6. Comparison of HIV-1 and HIV-2 levels in the liquid.
  • Figure 7 Supernatant obtained from the treatment of CD4 + T reservoir cells in the blood of HIV-1 patients using a specific monoclonal antibody of Ni 2+ , Co 2+ , a divalent metal chelating agent, and TRABD2A protein in Example 7. Comparison of HIV-1 levels.
  • Figure 8-1 Treatment of activated or non-activated CD4 + T reservoir cells obtained from individual patients using different Ni 2+ concentrations in Example 8 and comparison of HIV-1 levels in the supernatant obtained.
  • Figure 8-2 Treatment of activated or inactivated CD4 + T reservoir cells obtained from individual patients using different Ni <2+ concentrations in Example 8 and comparison of TRABD2A RNA content obtained.
  • Figure 8-3 Comparison of the levels of CD4 + T surface marker CD69 expression obtained by treatment with activated or inactivated CD4 + T reservoir cells obtained from individual patients using different Ni 2+ concentrations in Example 8.
  • Figure 8-4 Comparison of HIV-1 levels in the supernatant obtained by treating CD4 + T reservoir cells obtained from each patient using different Ni 2+ concentrations in Example 8.
  • Figure 9-1 Comparison of the TRABD2A content obtained in Example 9 using CD4 + T reservoir cells obtained from individual donors with and without activation.
  • Figure 9-2 Comparison of HIV-1 levels in supernatants obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different concentrations of Ni 2+ in Example 9.
  • Figure 9-3 Comparison of luciferase, TRABD2A RNA and Gag RNA content obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different Ni 2+ concentrations in Example 9.
  • Figure 9-4 Comparison of HIV-1 levels in the supernatant obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different Co 2+ concentrations in Example 9, and luciferase, Comparison of TRABD2A RNA and Gag RNA content.
  • Figure 9-5 Comparison of HIV-1 levels in the supernatant obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different concentrations of 1,10-phenanthroline in Example 9. , as well as a comparison of luciferase, TRABD2A RNA and Gag RNA content.
  • Figure 9-6 Cell surface obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different Ni 2+ , Co 2+ , 1,10-phenanthroline concentrations in Example 9. Mark the CD69 expression level comparison chart.
  • Figure 10-1 Comparison of HIV-2 levels in the supernatant obtained after treatment of HIV-2 infected CD4 + T reservoir cells with different contents of Ni 2+ , Co 2+ in Example 10.
  • Figure 10-2 Comparison of RNA content of TRABD2A obtained after treatment of HIV-2 infected CD4 + T reservoir cells with different contents of Ni 2+ and Co 2+ in Example 10.
  • FIG 11-1 Comparison of HIV-2 levels in supernatants obtained after treatment of HIV-2 infected CD4 + T reservoir cells using small interfering RNA (siRNA) in Example 11.
  • siRNA small interfering RNA
  • Figure 11-2 Comparison of RNA content of TRABD2A obtained after treatment of HIV-2 infected CD4 + T reservoir cells with small interfering RNA in Example 11.
  • Figure 12-1 HIV-1 levels in supernatants obtained after treatment of HIV-1 infected CD4 + T depot cells obtained from donors by electroporation (siRNAs electroporation) using the small interfering RNA in Example 12. Comparison chart.
  • Figure 12-2 HIV-1 reversed transcription (reverse transcriptase) in supernatant obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors by electroporation using small interfering RNA in Example 12. , RT) activity comparison chart.
  • Figure 12-3 Comparison of HIV-1 Gag RNA content obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors by electroporation using small interfering RNA in Example 12.
  • Figure 12-4 Comparison of RNA content of TRABD2A obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors by electroporation using small interfering RNA in Example 12.
  • Figure 12-5 HIV-1 infected CD4 + T reservoir cells obtained from donors after treatment with tandem siRNA electroporation in Example 12, and the resulting supernatant was HIV-1 Content comparison chart.
  • Figure 12-6 Comparison of RNA content of TRABD2A obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors using a small interfering RNA in Example 12.
  • Figure 12-7 Comparison of HIV-1 Gag RNA content obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors using a small interfering RNA in Example 12.
  • Figure 13-1 Comparison of the obtained TRABD2A RNA content in Example 13 in which the activated HIV-1 infected CD4 + T reservoir cells were slowly returned to rest.
  • FIG. 13-2 Comparison of the CD69 surface marker content of activated HIV-1 infected CD4 + T reservoir cells treated with shRNAs in Example 13 and allowed to slowly return to rest.
  • Figure 13-3 Comparison of HIV-1 levels in the supernatant obtained by treatment of activated HIV-1 infected CD4 + T reservoir cells using shRNAs in Example 13 and allowing them to slowly return to rest.
  • Figure 13-4 Comparison of the Gag RNA content obtained by treatment of activated HIV-1 infected CD4 + T reservoir cells with shRNAs in Example 13 and allowing them to slowly return to rest.
  • Figure 13-5 Comparison of the TRABD2A RNA content obtained by treatment of activated HIV-1 infected CD4 + T reservoir cells with shRNAs in Example 13 and allowing them to slowly return to rest.
  • Figure 14-1 In Example 14, the expression plasmids of TRABD2A protein and TRABD2B protein were introduced into HEK293T cells, respectively, and the cells were infected with HIV-1, HIV-2 and SIV mac239 , respectively, and the obtained supernatant was HIV-1. Comparison of HIV-2 and SIV mac239 content.
  • Figure 14-2 In Example 14, the expression plasmids of HIV-1 virus, HIV-2 virus, SIV virus, TRABD2A protein and TRABD2B protein were introduced into HEK293T cells, respectively, and the obtained supernatants were HIV-1 and HIV-2. Comparison with SIV content.
  • FIG. 15 Peripheral blood cells (PBMCs) isolated from HIV-1 infected patients whose viral load (Viral Load ⁇ 20 copies/mL) was not detected in plasma, and treated with monoclonal blocking antibody of TRABD2A for 72 hours. , the content of HIV-1 reservoir cells.
  • PBMCs Peripheral blood cells isolated from HIV-1 infected patients whose viral load (Viral Load ⁇ 20 copies/mL) was not detected in plasma, and treated with monoclonal blocking antibody of TRABD2A for 72 hours. , the content of HIV-1 reservoir cells.
  • FIG. 16 In Example 17, peripheral blood cells (PBMCs) isolated from HIV-1 infected patients with no viral load (Viral Load ⁇ 20 copies/mL) were removed and CD8 + T immune cells were removed and used. The content of HIV-1 reservoir cells after 72 hours of TRABD2A monoclonal blocking antibody treatment.
  • PBMCs peripheral blood cells isolated from HIV-1 infected patients with no viral load (Viral Load ⁇ 20 copies/mL) were removed and CD8 + T immune cells were removed and used. The content of HIV-1 reservoir cells after 72 hours of TRABD2A monoclonal blocking antibody treatment.
  • FIG. 17 In Example 18, peripheral blood cells (PBMCs) isolated from HIV-1 infected patients in which no viral load (Viral Load ⁇ 20 copies/mL) was detected in plasma were removed and CD8 + T immune cells were not removed and used. The content of HIV-1 depot cells after 72 hours of treatment with TRABD2A and PD-1 blocking antibodies.
  • PBMCs peripheral blood cells isolated from HIV-1 infected patients in which no viral load (Viral Load ⁇ 20 copies/mL) was detected in plasma were removed and CD8 + T immune cells were not removed and used.
  • the content of HIV-1 depot cells after 72 hours of treatment with TRABD2A and PD-1 blocking antibodies.
  • FIG. 18 In Example 19, resting CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients with no viral load (Viral Load ⁇ 20 copies/mL) were cultured in vitro, CD4 + T cells were treated with the blocking antibody TRABD2A 72 h, CD4 + T cells with a Gag polypeptide and the activated CD8 + T cell populations were cultured for 5 days, the content of the case of HIV-1 cell repository.
  • FIG. 19 In Example 20, resting CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients with no viral load (Viral Load ⁇ 20 copies/mL) were cultured in vitro, CD4 + T cells treated with the blocking antibody TRABD2A 72 h, CD4 + T cells and activated and treated with PD-1 blocking antibody CD8 + T cells co-cultured for 5 days with a Gag polypeptide group, the content of HIV-1 repository cells happening.
  • Figure 20 Example 21, in which HIV-1 infected patients with viral load (Viral Load ⁇ 20 copies/mL) were accidentally wounded, and the Microglia cells and the resting CD8 + T in the blood were obtained from the CNS system. The cells were cultured in vitro and treated with TRABD2A blocking antibody and Gag polypeptide for 96 hours to release the survival rate of HIV-1 Microglia cells.
  • BD means below detection limit (below detection limit);
  • RLU refers to relative luminescence units
  • NS means not significant
  • Mock refers to the negative control group
  • HIV Release refers to the level of HIV virus release
  • Infectivity refers to the level of virus infection
  • the human TRABD2A protein of the HIV reservoir cells has an inhibitory effect on the release of HIV-1 virus and is specifically inhibited against HIV-1. And participate in the specific degradation of Gag precursors.
  • the Myc-tagged Gag protein was introduced into CD4 + T reservoir cells infected with HIV-1 virus and cultured for 4 days.
  • Cellular proteins that may interact with Gag proteins at the late stage of HIV-1 replication were identified by immunoprecipitation experiments using anti-Myc antibodies and IgG control antibodies. The results showed that 54 proteins formed a precipitate with the Myc-labeled Gag protein (see Table 1), while 69 proteins formed a precipitate with the IgG antibody (see Table 2). By comparison with the IgG control antibody, it was found that 25 cell proteins specifically bind to the Gag protein.
  • TRABD2A protein was significantly higher in HIV-infected CD4 + T reservoir cells than in activated CD4 + T cells, whereas TRABD2B protein was in HIV-infected CD4 + T reservoir cells. None of the above or activated CD4 + T cells were found.
  • the specific test procedure was as follows: isolated CD4 + T cells obtained from 10 healthy donors, Gag ( 4 ⁇ 10 6 cells/electroporation) constructed with Myc markers, respectively, after 6 hours with HIV-1 NL4.3 Centrifuged.
  • IP immunoprecipitation
  • the supernatant obtained after the above two extraction steps was co-reacted with Protein A and protein G Dynabeads (from Invitrogen), and the protein A and protein G Dynabeads were pretreated with the antibody at 4 °C.
  • the immunoprecipitated product was washed 5-10 times with cold immunoprecipitation buffer and PBST (500 ⁇ L each).
  • the immunoprecipitated product was first degraded for 5 minutes at 95 ° C in 20 mM dithiothreitol (DTT) (from Sigma) and then alkylated in 50 mM iodoacetamide (IAA) (from Sigma) for 30 minutes at room temperature in a dark room.
  • DTT dithiothreitol
  • IAA mM iodoacetamide
  • the sample was transferred to a 10 kD centrifugal spin filter (from Millipore), washed three times with 200 ⁇ L of 8 M urea by centrifugation at 14,000 x g, and washed twice with 200 ⁇ L of 50 mM ammonium bicarbonate.
  • trypsin from Promega was added at a ratio of 1:50 (enzyme/matrix, m/m) in 200 ⁇ L of 50 mM ammonium hydrogencarbonate, and trypsinization was carried out at 37 ° C for 16 hours.
  • the filtration system was replaced with a new collection tube and centrifuged at 14,000 x g to collect the polypeptides.
  • the filtration system can be washed with 100 ⁇ L of 50 mM NaHCO 3 .
  • the obtained polypeptides were desalted using STAGE TIP.
  • MS experiments were performed by nanoscale UHPLC (EASY-nLC1000 from Proxeon Biosystems, Odense, Denmark) coupled to Orbitrap Q-Exactive, equipped with a nanoelectron spray source (from Thermo Fisher Scientific, Bremen, Germany).
  • the polypeptide was dissolved in 0.1% FA with 5% CH 3 CN and applied to a RP-HPLC analytical column (75 ⁇ m x 15 cm) packed with 2 m C18 magnetic beads (from Thermo Fisher Scientific, Bremen, Germany) with a gradient of 2 h.
  • a complete MS/MS cycle consists of a complete MS scan (resolution, 70,000; AGC value, le6; maximum injection time 50ms) in profile mode, mass range from 300 to 1800m/z, followed by cracking
  • the process uses the top ten strongest ions to normalize the collision energy to 28% of the centroid mode (resolution, 17,500; AGC value le5, maximum injection time 100ms) high energy collision dissociation.
  • the dynamic exclusion window is set at 40 seconds.
  • a micro scan is required for each MS and MS/MS scan.
  • HIV-1 virus vector was treated with 293T cells with different TRABD2A protein expression levels, and these 293T cells containing TRABD2A protein expression were found to be invaded by HIV-1 compared to 293T cells without TRABD2A protein expression.
  • the infectivity can be reduced to a level of up to about 1/4000, and even more so that the infectivity of the virus is completely undetectable.
  • the specific test procedure was as follows: 293T cells were transfected with the Myc-tagged TRABD2A protein expression vector, including pNL4.3, including the negative control group. At 48 hours post-transfection, the supernatant was used to infect TZMbl reporter cells to obtain virus infection levels. The background RLU was subtracted from each measurement ( Figure 1-1, Fig. 1b).
  • TRABD2A protein did not affect intracellular viral Gag transcription levels. This demonstrates that overexpression of TRABD2A protein significantly reduces the granule packaging of HIV-1, but does not affect the transcription of HIV-1. At the same time, the viral Gag protein positively associated with the TRABD2A protein was also significantly reduced, while the envelope glycoprotein gp120 and the like were not affected, indicating that TARBD2A is involved in the specific degradation of the Gag precursor.
  • the specific test procedure was as follows: All RNA was extracted for qPCR to measure the Gag transcription level of HIV-1 (Fig. 1-4, Fig. 1e).
  • the cells were lysed for immunoblotting and the expression levels of HIV-1 Gag, gp120, TRABD2A protein and glyceraldehyde phosphate dehydrogenase protein were detected using specific antibodies (Fig. 1-5, Fig. 1f).
  • TRABD2A protein The effect of overexpression of TRABD2A protein in 293T cells on the CMV promoter-driven HBV (hepatitis B virus) virus was examined to determine whether the TRABD2A protein specifically acts on HIV-1, and a complete HBV replication, TRABD2A, was found. Protein does not affect the replication and release of HBV.
  • the specific test procedure was as follows: The 293T cells of the experimental group were transfected with the Myc-tagged TRABD2A expression vector, and treated with the HBV replicon (CMV promoter) together with the negative control group. After 48 hours, HBV virions in the culture supernatant were examined using HBs enzyme-linked immunosorbent assay ( Figures 1-6, Fig. 1g). The cells were lysed for immunoblotting to measure the expression levels of TRABD2A and glyceraldehyde phosphate dehydrogenase ( Figures 1-7, Fig. 1h).
  • Table 1 shows the precipitation of 54 proteins with Myc-tagged Gag protein
  • the TRABD2A-201 and 202 and TRABD2B proteins in the human TRABD2A protein family have an inhibitory effect on HIV-1 virus release and are specifically inhibited against HIV-1.
  • chimpanzee's TRABD2A protein also has the effect of inhibiting the release of HIV-1 virus, and has specific inhibition to HIV-1.
  • TRABD2A proteins There are three specific human TRABD2A proteins, TARBD2A-201 protein, TRABD2A-202 protein and TRABD2A-203 protein. There is only one human TRABD2B protein.
  • the anti-HIV-1 activity of all three human TRABD2A proteins, human TRABD2B protein and chimpanzee TRABD2A protein (201) was examined.
  • the human TRABD2A-201 protein and the human TRABD2B protein reduced the infectivity of HIV-1 to 1/1087 and 1/186 of the negative control group, respectively, relative to the negative control group.
  • the human TRABD2A-203 protein showed no anti-HIV-1 activity.
  • Human TRABD2A-202 protein and chimpanzee TRABD2A protein also reduced HIV-1 invasiveness, except that the magnitude of the decrease was slightly different from that of human TRABD2A-201. This suggests that the primate TraB family cell membrane metalloproteinases may have anti-HIV-1 activity.
  • the specific test procedures are as follows: 293T cells were transfected with GFP-tagged human TRABD2A-201, FLAG-tagged human TRABD2A-202 and TRABD2A-203, MYC-FLAG-labeled human TRABD2B, FLAG-labeled chimpanzee TRABD2A protein, including the negative control group. Both were treated with pNL4.3.
  • the TRABD2A protein and the TRABD2B protein are inhibitory to HIV-1, which is manifested in the specific degradation of the viral core molecule Gag protein, which affects the transcription of Gag.
  • Both human TRABD2A and 2B proteins exhibit a very strong ability to block HIV-1 infection and do not affect Gag transcription.
  • the specific test procedure was as follows: 293T cells were transfected with GFP-tagged TRABD2A expression vector and Myc-labeled TRABD2B expression vector, including pNL4.3 ⁇ E-GFP and negative expression of VSV-G, HIV-1 NL4.3, or the negative control group, respectively. Carrier treatment of -89.6. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain virus infection levels, and background RLU was subtracted from each measurement ( Figure 3-1, Fig. 2a). All RNAs extracted were subjected to qPCR to quantify the Gag transcript and normalized to glyceraldehyde phosphate dehydrogenase ( Figure 3-2, Fig. 2b).
  • TRABD2A and 2B demonstrate a limiting capacity for HIV-1 BH10 and HIV-1 BaL infection.
  • the specific test procedure was as follows: 293T cells were transfected with GFP-tagged TRABD2A and Myc-labeled TRABD2B, including the viral vector BH10 (Fig. 3-3, Fig. 2c), BaL (Fig. 3-4, Fig. .2d) Processing. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the level of infection of the virus, and the background RLU was subtracted from each measurement.
  • the human TRABD2B protein also showed a function of preventing HIV-1 infection and enhancing viral Gag protein degradation without affecting Gag transcription.
  • the specific test procedure was as follows: 293T cells were transfected with Myc-tagged TRABD2B expression vector, including pNL4.3, including the negative control group. At 48 hours post-transfection, the supernatant was used to infect TZMbl reporter cells to obtain virus infection levels, and the background RLU was subtracted from each measurement ( Figure 3-5, Extended Data Fig. 2a). All RNA was extracted for qPCR to quantify viral Gag transcripts and normalized using glyceraldehyde phosphate dehydrogenase ( Figure 3-6, Extended Data Fig. 2b). The content of TRABD2B, Gag and glyceraldehyde phosphate dehydrogenase protein was determined by immunoblotting assay (Fig. 3-7, Extended Data Fig. 2c).
  • the human TRABD2A protein and the TRABD2B protein have the effect of inhibiting other lentiviruses, in particular, inhibiting the release of HIV-2 virus, and have specific inhibition against HIV-2.
  • Overexpression of human TRABD2A and 2B has the ability to limit infection for SIV mac239 , HIV-2 ST , HIV-1 89.6 , CCR5 HIV-1 AD8 , and the like.
  • the specific test procedures were as follows: 293T cells were transfected with GFP-tagged TRABD2A and Myc-labeled TRABD2B, including the viral vectors CCR5HIV-1 AD8 , HIV-1 89.6 , and SIV mac239 (Fig. 4-1, Fig.). 2e) or HIV-2 ST (Fig. 4-2, Fig. 2f) treatment. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the level of infection of the virus, and the background RLU was subtracted from each measurement.
  • TRABD requires Mn 2+ to achieve its inhibition of HIV-1.
  • Divalent metal chelators, Ni 2+ , Co 2+ and Zn 2+ can inhibit the inhibition of HIV-1 by TRABD.
  • Human TRABD2A and TRABD2B are membrane cell metalloproteinases. Treatment with 1,10-phenanthroline or other divalent metal chelators, although the expression levels of TRABD2A and 2B did not change, but their antiviral ability completely disappeared. The results were treated with Co 2+ , Ni 2+ , Mn 2+ and Zn 2+ , respectively. Co 2+ and Ni 2+ can inhibit the anti-HIV-1 virus ability of human TRABD2A, while Mn 2+ enhances the anti-HIV-1 virus ability of human TRABD2A. When Zn 2+ is at a higher concentration, it exhibits a certain inhibitory effect on the anti-HIV-1 virus ability of TRABD2A.
  • the specific test procedure was as follows: 293T cells were infected with GFP-tagged TRABD2A expression vector and Myc-labeled TRABD2B expression vector, including pNL4.3, including the negative control group. Six hours after transfection, the cells were washed with various concentrations of the following solutions: 1,10-phenanthroline, Co 2+ , Ni 2+ , Mn 2+ , and Zn 2+ . After 42 hours of transfection, the cells were lysed and the expression levels of TRABD2A and glyceraldehyde phosphate dehydrogenase protein were detected by immunoblotting with specific antibodies. The supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus.
  • TRABD2A for the effect of TRABD2B against HIV-1 virus capacity.
  • the specific test procedure was as follows: 293T cells were transfected with Myc-tagged TRABD2B expression vector, including pNL4.3, including the negative control group. Six hours after transfection, the cells were washed with various concentrations of the following solutions: Co 2+ , Ni 2+ , Mn 2+ , and Zn 2+ . After 42 hours of transfection, the cells were lysed and the expression levels of TRABD2B and glyceraldehyde phosphate dehydrogenase protein were detected by immunoblotting with specific antibodies.
  • Inhibition of human TRABD2A protein activity by metal ions, metal chelators and related monoclonal antibodies can promote the infection of virus-infected reservoir cells to release HIV-1 and HIV-2 viruses in vitro and be detected.
  • HIV-1, HIV-2 type virus can be released from a reservoir cell that promotes HIV infection.
  • the specific test procedure is as follows: HIV-1 and HIV-2 viruses are infected with resting CD4+ T cells by ultracentrifugation. Six hours after the infection was completed, the excess virus was washed away with the medium, and then 100 ⁇ M of Ni 2+ , Co 2+ , 5 ⁇ M of 1,10-phenanthroline, or 100 ng of the specific monoclonal antibody of TRABD2A were added.
  • Antibody Antibody
  • the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus, as shown in FIG.
  • the inhibition of human TRABD2A protein activity by metal ions, metal chelators and related monoclonal antibodies can promote the release of HIV-1 virus in the reservoir cells of HIV-1 patients, thereby accurately detecting the amount of cells in the patient's body.
  • peripheral blood mononuclear cells PBMC
  • CD4 + T reservoir cells were purified.
  • the obtained CD4 + T reservoir cells were treated with 100 ⁇ M Ni 2+ , Co 2+ , 5 ⁇ M 1,10-phenanthroline, or 100 ng of a monoclonal antibody (Antibody) of TRABD2A protein, respectively.
  • Antibody a monoclonal antibody
  • the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus as shown in FIG.
  • Ni 2+ ions to treat the reservoir cells obtained from the patient will promote the release of HIV-1 virus without activating the reservoir cells and will be detected.
  • HIV-1 latent infection reservoir cells were isolated from patients receiving cART treatment for more than two years to further analyze the anti-HIV-1 physiological effects of TRABD2A protein in humans.
  • TZMbl reporter cells were used to detect activated and inactivated depot cells in the presence or absence of Ni 2+ .
  • the results showed that the release of HIV-1 was associated with the treatment of Ni 2+ except for Patient No. 3, and HIV-1 was not released in the absence of Ni 2+ .
  • activated CD4 + T cells released a large amount of HIV-1 virus after activation with CD3/CD28 plus IL2.
  • the expression of TRABD2A on activated CD4 + T cells was also greatly reduced.
  • Ni 2+ does not activate CD4 + T reservoir cells, suggesting that HIV-1 release after Ni 2+ treatment is not due to activation of CD4 + T reservoir cells.
  • the specific test procedure was as follows: The isolated CD4 + T cells were aliquoted and treated with various concentrations of Ni 2+ with or without activation of the CD3/CD28 promoter and IL2. After 24 hours of treatment, the medium was used to infect TZMbl reporter cells to obtain the release level of the virus, and the background RLU was subtracted from each measurement data (Fig. 8-1, Extended Data Fig. 21b). All RNA in CD4 + T cells was extracted and the transcript of TRABD2A was measured by qPCR and normalized with glyceraldehyde phosphate dehydrogenase (Fig. 8-2, Extended Data Fig. 21c). The CD4 + T surface marker CD69 expression level was measured by flow cytometry (Fig. 8-3, Extended Data Fig. 21d).
  • HIV-1 latent-infected depot cells were isolated from 16 patients who underwent cART treatment for more than two years and whose viral RNA content in the plasma was well below 20 cp/mL, and the validation test was continued. Observations were started 24 hours after treatment with Ni 2+ and without Ni 2+ , respectively. It was found that after treatment with Ni 2+ , all patients' reservoir cells released HIV-1 virus, and the reservoir cells were not activated; At the same time, the reservoir cells that were not treated with Ni 2+ were not detected to release any HIV-1 virus.
  • the specific test procedure is as follows: The latent HIV-1-infected reservoir cells were extracted from 16 cART-treated patients (all patients with plasma viral load ⁇ 20 copies/mL), and all types of cells were used without activation of cells. The solution of concentration Ni 2+ was treated for 24 hours. The medium was used to infect TZMbl reporter cells to obtain the release level of the virus, and the background RLU was subtracted from each measurement data (Fig. 8-4, Extended Data Fig. 21e
  • metal ions, metal chelators, and related monoclonal antibodies to inhibit human TRABD2A protein activity, enabling HIV-infected reservoir cells, including reservoir cells obtained in patients, without activating HIV-infected reservoir cells , released HIV-1 virus and detected.
  • the specific test procedure is as follows: CD4 + T cells are isolated from two unrelated healthy donors, and cultured for 12 hours, 24 hours, 48 hours, or 72 hours under the conditions of Activation/Resting.
  • Ni 2+ was used to eliminate the metalloproteinase activity of TRABD2A. HIV infection of CD4 + T cells to release a large repository of HIV-1 cells in the presence of Ni 2+ and Ni 2+ are positively correlated with the concentration and treatment time. At the same time, Ni 2+ does not affect the level of vector-driven luciferase, TRABD2A protein or viral Gag transcription in HIV-infected CD4 + T reservoir cells. However, HIV-infected CD4 + T reservoir cells do not release any HIV-1 virus that is recognized in the absence of Ni 2+ , which is consistent with the viral restriction of TRABD2A.
  • the specific test procedure was as follows: HIV-infected CD4 + T reservoir cells were injected by electroporation with a luciferase expression vector and transfected with HIV-1 NL4.3 . After 6 hours of transfection, the virus was washed twice to remove the virus, and then treated with no concentration of Ni 2+ after 24 hours of transfection. One or two days after treatment, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (background RLU was subtracted from each measurement) (Fig. 9-2, Fig. 5b).
  • HIV-infected CD4 + T reservoir cells were lysed to quantify luciferase activity, and all RNA was extracted for qPCR to measure TRABD2A RNA and Gag RNA levels, normalized to glyceraldehyde phosphate dehydrogenase ( Figure 9-3, Fig. 5c-e).
  • Co 2+ can also limit TRABD2A activity and enhance the ability of HIV-infected CD4 + T reservoir cells to release virus.
  • Co 2+ did not affect the transcription levels of TRABD2A and viral Gag.
  • the specific test procedure was as follows: HIV-infected CD4 + T reservoir cells were injected by electroporation with a luciferase expression vector and transfected with HIV-1 NL4.3 . After 6 hours of transfection, the virus was washed twice to remove the virus and treated with various concentrations of Co 2+ after 24 hours of infection.
  • HIV-infected CD4 + T reservoir cells were lysed to quantify luciferase activity, and all RNA was extracted for qPCR to measure TRABD2A RNA and viral Gag RNA, normalized with glyceraldehyde phosphate dehydrogenase.
  • Figure 9-5 Extended Data Fig. 15e–h
  • the level of surface CD69 labeling is detected to rule out the possibility that the virus is released due to activation. No cells were found to be activated by 1,10-phenanthroline, Ni 2+ or Co 2+ .
  • the specific test procedure was as follows: unstained HIV-infected CD4 + T reservoir cells and activated CD4 + T cells were used as a control group.
  • FIG. 9 9-2 treated infected CD4 + T cell library stored in HIV
  • FIG. 9-4 treated infected CD4 + T cells were respectively repository 1 , 10- phenanthroline, Co 2+ , or Ni 2+ treatment, and then the surface marker CD69 expression level was detected by flow cytometry.
  • Inhibition of human TRABD2A protein activity by metal ions, metal chelators, and related monoclonal antibodies can cause HIV-infected CD4 + T reservoir cells to release HIV-2 virus and be detected.
  • VSV-G and HIV-2 ST were combined to infect HIV-infected depot cells to increase HIV-2 ST cell membrane fusion. It was observed that in the presence of Co 2+ or Ni 2+ , the HIV-2 virus was released from the HIV-infected reservoir cells into the culture supernatant.
  • the specific test procedure is as follows: HIV-infected depot cells were transfected with HIV-2 ST (VSV-G). After 6 hours of transfection, the cells were washed twice to remove the injected virus and treated with different concentrations of Co 2+ and Ni 2+ . After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (the background RLU was subtracted from each measurement data) (Fig. 10-1, original Extended Data Fig.
  • Removal of the human TRABD2A protein by siRNA can cause HIV-infected depot cells to infect and release the HIV-2 virus and be detected.
  • HIV-2 virus is released from HIV-infected reservoir cells.
  • siRNA against TRABD2A and control control siRNA siCtrl
  • siCtrl siRNA against TRABD2A
  • cells were transfected with HIV-2 ST (VSV-G) by centrifugation. After 6 hours of transfection, two washes were performed to remove the injected virus. 48 hours after transfection, the medium was used to infect TZMbl reporter cells to obtain the release level of the virus (background RLU was subtracted from each measurement data) (Fig. 11-1, original Extended Data Fig. 20e).
  • Removal of human TRABD2A protein by siRNA can cause infection of the reservoir cells in the patient, release of HIV-1 virus, and detection.
  • RNA interference (RNAi) strategies were used to eliminate the TRABD2A protein in the reservoir cells.
  • siRNA against TRABD2A was electroporated into reservoir cells and subjected to spinoculation 24 hours later using HIV-1 NL4.3 .
  • TRABD2A was found to be cleared, and after 48 hours, the HIV-1 virus was released in a large amount into the culture supernatant.
  • HIV-1 reverse transcription analysis showed that with the clearance of TRABD2A, the reservoir cells produced a large number of viruses, and the viral Gag transcription level did not change.
  • the specific test procedure was as follows: The depot cells were isolated from three healthy donors, and the siRNAs against TRABD2A and the control control siRNA were separately injected into the reservoir cells.
  • siRNA was delivered to HIV-infected depot cells by tandem. After clearance of TRABD2A, HIV-1 virus is released in large quantities from HIV-infected reservoir cells, and viral transcription levels remain unchanged.
  • the specific test procedure was as follows: siRNA against TRABD2A and control control siRNA were separately fed into HIV-infected reservoir cells by tandem method, and the cells were transfected with HIV-1 NL4.3 by centrifugation. After 6 hours of transfection, wash twice to eliminate the input virus. 48 hours after transfection, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (the background RLU was subtracted from each measurement data) ( Figure 12-5, former Extended Data Fig. 17b).
  • HIV-infected depot cells were extracted for qPCR to measure TRABD2A RNA ( Figure 12-6, former Extended Data Fig. 17c) and Gag RNA ( Figure 12-7, former Extended Data Fig. 17d), dehydrogenation using glyceraldehyde phosphate The enzyme is normalized.
  • shRNA to clear human TRABD2A protein can cause HIV-infected depot cells to infect and release HIV-1 virus and be detected.
  • the level of expression of TRABD2A and the sensitivity to HIV-1 infection after activation of HIV-infected depot cells were examined to determine if activation is reversible.
  • the primate HIV-infected CD4 + T reservoir cells are first activated and the IL-2 concentration is gradually reduced to return the CD4 + T cells to a resting state.
  • the expression level of TRABD2A was significantly reduced in the 1-3 days of activation and began to recover on the 5th day after the CD3/CD28 activator was removed, and reached a considerable extent in Article 15.
  • the specific test procedure is as follows: The test procedure is: (1) CD3 CD28 and IL2 (50 U/mL) are used to activate CD4 + T cells on day 0; (2) Beads are removed on day 3, and IL2 content is decreased to 25 U/ (3) IL2 content decreased to 15 U/mL on day 5; (4) IL2 content decreased to 7.5 U/mL on day 7; (5) IL2 content decreased to 3.75 U/mL on day 9; (6) The IL2 content decreased to 1.5 U/Ml on the 11th day; (7) the IL2 content decreased to 0.75 U/mL on the 13th day; (8) Analysis was performed on the 15th day. The RNA level of TRABD2A after activation of HIV-infected depot cells was detected and normalized by glyceraldehyde phosphate dehydrogenase (Fig. 13-1, former Extended Data Fig. 18b)
  • the primate CD4 + T cells were treated using the above strategy to channel lentiviral shRNAs directed against TRABD2A into the cell.
  • the degree of activation of these CD4 + T cells transduced by shRNAs is determined by the level of CD69 surface marker expression, indicating that these cells are indeed at rest.
  • the above cells were simultaneously transfected with HIV-1 NL4.3 , and it was found that HIV-infected CD4 + T reservoir cells cleared by TRABD2A were able to release HIV-1 virus, and there was no change in Gag transcription level.
  • the specific test procedure is as follows: The test procedure is: (1) CD3CD28 and IL2 (50 U/mL) are used to activate CD4 + T cells on day 0; (2) shRNAs are transferred into cells on day 3, and magnetic beads are removed, IL2 content The decrease was 25 U/mL; (3) the IL2 content decreased to 15 U/mL on the 5th day; (4) the IL2 content decreased to 7.5 U/mL on the 7th day; (5) the IL2 content decreased to 3.75 U/mL on the 9th day; (6) The IL2 content decreased to 1.5 U/Ml on the 11th day; (7) The IL2 content decreased to 0.75 U/mL on the 13th day; (8) The HIV-1 NL4.3 transfection was added on the 14th day; (9) Analysis was performed for 16 days.
  • the CD69 surface marker was detected using a flow cytometer (Fig. 13-2, original Extended Data Fig. 18d). Transfection was performed on day 14, and the virus was removed by washing twice at 6 hours after transfection. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (background RLU was subtracted from each measurement data) (Fig. 13-3, original Extended Data Fig. 18e). All RNA was extracted for qPCR to measure Gag RNA (Fig. 13-4, original Extended Data Fig. 18f) and TRABD2A RNA (Fig. 13-5, original Extended Data Fig. 18g)
  • Human, primate, and mammalian TRABD2A proteins and 2B are highly effective in inhibiting the infection of HIV-1, HIV-2, SIV, and MLV.
  • HIV-1 virus pNL4.3 HIV-2 virus HIV-2 ST and SIV mac239 and TRABD2A protein and TRABD2B protein expression plasmid (from Shanghai Heyuan Biotech Co., Ltd.) were introduced into HEK293T cells, respectively.
  • the virus supernatant was recovered after 48 hours, and the supernatant was used to infect TZMbl reporter cells to obtain the infection level of the virus, as shown in Figure 14-1.
  • HIV-1, HIV-2, SIV plasmids and TRABD2A, 2B plasmids were introduced into 293T cells, and the virus supernatant was recovered 48 hours later. The supernatant was used to infect TZMbl reporter cells to obtain the level of infection of the virus, as shown in Figure 14-2.
  • Monoclonal antibodies to human TRABD2A were used to inhibit the activity of TRABD2A protein on the surface of the reservoir cells in patients. After that, the reservoir cells in the patient's body can release the HIV virus antigen, which can be specifically recognized by the CD8 cells in the patient and killed.
  • the specific test procedure is as follows: a monoclonal antibody of human TRABD2A in an amount of 0.5 mg/kg is intravenously injected into a blood vessel for long-term ART treatment. 2-4 injections per week, for 1-2 months, after blood test to detect the cell content of the reservoir cells in the patient. In this way, whether to continue to inject or increase the amount of monoclonal antibody.
  • PBMCs peripheral blood cells
  • PBMC Percoll peripheral blood mononuclear cells
  • the human TRABD2A protein in the HIV depot cells has an inhibitory effect on the release of HIV-1 virus, it has specific inhibition to HIV-1 and is involved in the specific degradation of the Gag precursor. Inhibition of TRABD2A activity can trigger viral presentation on the surface of the reservoir cells, causing the reservoir cells to be recognized and cleared by CD8 + T cells.
  • PBMCs peripheral blood cells
  • PBMC Percoll peripheral blood mononuclear cells
  • PBMCs peripheral blood cells
  • PBMC Percoll peripheral blood mononuclear cells
  • the PBMC is 3X.
  • 106/mL was cultured in RPMI1640 medium containing 10% FBS serum.
  • TRABD2A, PD-1 or both were combined with antibodies against IgG and cultured for 3-5 days without the addition of any stimulating factors.
  • all CD4 + T cells in PBMCs were recovered, and the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected, as shown in FIG.
  • CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients who have been taking drugs for more than two years and are not detected in plasma (Viral Load ⁇ 20copies/mL) In vitro culture.
  • CD4 + T cells were treated with the blocking antibody TRABD2A 72 h, CD4 + T cells with a Gag polypeptide and the activated CD8 + T cell populations were cultured for 5 days, and the survival rate of HIV-1 detection cell repository.
  • CD4 + and CD8 + T cells CD4 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5 ⁇ 10 6 /mL, and blocking antibody of TRABD2A and control IgG were added. At the same time, CD8 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5X 106/mL, and a Gag polypeptide group and IL2 were added.
  • CD4 + and CD8 + T cells After culturing CD4 + and CD8 + T cells for 3 days, the two were combined, and after 5 days of continuous culture, the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected. See Figure 19.
  • CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients who have been taking drugs for more than two years and are not detected in plasma (Viral Load ⁇ 20copies/mL) In vitro culture.
  • CD4 + and CD8 + T cells CD4 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5 ⁇ 10 6 /mL, and blocking antibody of TRABD2A and control IgG were added.
  • CD8 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5 ⁇ 10 6 /mL, and stimulated with Gag polypeptide group and IL2, and treated with PD-1 blocking antibody and control IgG antibody. After culturing CD4 + and CD8 + T cells for 3 days, the two were combined, and after 5 days of continuous culture, the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected. See Figure 19.

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Abstract

Disclosed is the use of a substance or a vector thereof for inhibiting or eliminating TRABD in the preparation of a reagent and/or a drug for detecting or eliminating HIV-infected cells, a method for detecting or eliminating HIV-infected cells, the use of the substance or a vector thereof in the preparation of a reagent for increasing cell resistance ability to HIV and/or SIV infection or for reducing the release of HIV and/or SIV progeny virus by infected cells, and a screening method for a substance capable of eliminating or detecting cells infected with HIV and/or SIV. The substance is capable of inhibiting or eliminating TRABD activity, triggering the release of HIV and other viruses by HIV reservoir cells infected with HIV and other viruses, thereby enabling the HIV reservoir cells infected with HIV and other viruses to be detected or killed.

Description

抑制或消除TRABD的物质在HIV试剂中的用途及筛选方法Use of a substance for inhibiting or eliminating TRABD in HIV reagents and screening method 技术领域Technical field
本发明涉及检测或清除HIV等病毒感染的细胞相关的技术以及相关方法,具体涉及使用能够抑制或清除TRABD(TraB domain-containing protein)的物质制备检测或清除HIV储存库细胞的试剂和/或药物以及筛选该种物质的方法。The present invention relates to a technique and related method for detecting or eliminating cells infected with a virus such as HIV, and particularly relates to a reagent and/or a drug for detecting or eliminating cells of an HIV reservoir using a substance capable of inhibiting or eliminating TRABD (TraB domain-containing protein). And methods of screening for such materials.
背景技术Background technique
HIV感染已对全球人类健康构成重大威胁,而且不能治愈。目前的抗HIV疗法,譬如鸡尾酒疗法,只能有效控制病毒的积极复制,而不能彻底根治。即使通过联合抗病毒疗法使得体内的HIV病毒降低到无法检测的程度,一旦停药,病毒就会反弹。而在反弹的过程中,存在一类受到HIV病毒感染但是并不释放HIV病毒的细胞起到了关键作用,因为在目前的抗HIV疗法中,这些细胞并不会被分离鉴定或者被清除。因此,需要寻找出有效和安全的针对这类细胞的检测方法和清除方法。HIV infection has become a major threat to global human health and cannot be cured. Current anti-HIV therapies, such as cocktail therapy, can only effectively control the active replication of the virus, but not radically. Even if the HIV virus in the body is reduced to an undetectable level by joint antiviral therapy, the virus will rebound once the drug is stopped. In the process of rebound, there is a group of cells that are infected with HIV but do not release HIV, because these cells are not isolated or cleared in current anti-HIV therapies. Therefore, there is a need to find effective and safe detection methods and methods for such cells.
艾滋病患者,在进行抗病毒治疗(Highly Active Antiretroviral Therapy,HAART)后,血浆内的病毒载量迅速下降,直到最低检测限以下(<20拷贝/mL)。然而,一旦停止抗病毒治疗,体内的病毒会迅速反弹。故而,艾滋病患者都需要终身进行抗病毒治疗。这种病毒的迅速反弹,是源自存在一类HIV储存库细胞,这类细胞感染HIV病毒后,HIV病毒进入潜伏状态而不能释放子代病毒颗粒(统称为“HIV储存库细胞”)。针对此类细胞中的HIV病毒,目前并没有任何方法进行鉴定,更谈不上清除它们。即使长年,甚至数十年持续使用抗HIV药物,一旦停用,HIV病毒就迅速反弹,病毒感染无法根除。同时,这类细胞存量很低,进一步造成了这类细胞难以检测,难以清除。HIV存储库细胞包括外周血细胞,例如CD4 +T细胞,还可能为NK细胞、脑细胞等。 In AIDS patients, the viral load in plasma rapidly decreased after the Highly Active Antiretroviral Therapy (HAART), up to the lowest detection limit (<20 copies/mL). However, once antiviral therapy is stopped, the virus in the body will rebound quickly. Therefore, AIDS patients need lifelong antiviral treatment. The rapid rebound of this virus stems from the presence of a class of HIV depot cells. After infection with HIV, the HIV virus enters a latent state and cannot release progeny virus particles (collectively referred to as "HIV reservoir cells"). There is currently no way to identify HIV viruses in such cells, let alone to clear them. Even if anti-HIV drugs continue to be used for many years or even decades, once they are stopped, the HIV virus will rebound quickly and the virus infection will not be eradicated. At the same time, the stock of such cells is very low, further causing such cells to be difficult to detect and difficult to remove. The HIV reservoir cells include peripheral blood cells, such as CD4 + T cells, and may also be NK cells, brain cells, and the like.
目前临床上尚没有检测和杀死这类被HIV感染的HIV存储库细胞存量的方法。现有的检测方法,基本都是在实验室条件下通过激活HIV储存库细胞,譬如采取的通过添加类似植物凝集素(phytohemagglutinin,PHA)等物质激活HIV储存库细胞,使其细胞积极复制,并大量释放子代病毒细胞,从而对释放的病毒数量进行检测并估算HIV储存库细胞的大致存量。该检测方法的缺点在于,(1)其无法做到标准化和定量化。(2)HIV存储库细胞一旦被激活后,虽能够促发释放病毒,它已经缺失了HIV存储库细胞的重要的生理特性。故而其释放病毒,不具有潜伏病毒的特征。There is currently no clinically available method for detecting and killing such HIV-infected HIV reservoir cells. The existing detection methods basically activate the HIV storage cells under laboratory conditions, for example, by adding substances such as phytohemagglutinin (PHA) to activate the HIV storage cells, and actively sterilizing the cells, and Progeny virus cells are released in large quantities to detect the amount of virus released and estimate the approximate stock of HIV reservoir cells. The disadvantage of this detection method is that (1) it cannot be standardized and quantified. (2) Once the HIV storage cell is activated, it can promote the release of the virus, which has already lost important physiological characteristics of the HIV storage cell. Therefore, it releases the virus and does not have the characteristics of a latent virus.
而在治疗方法方面来说,本领域内都在研究以国际理论上广泛认可震动疗法(Shock&Kill)为基本治疗原则的方法。与现有的检测方法类似的,在Shock&Kill治疗原则中,也首先需要激活/Shock HIV存储库细胞,然后由Killer CD8 +T细胞发现并清除被激活后开始释放病毒的原HIV感染的CD4 +T储存库细胞。然而,在治疗方法研究方面,目前遇到的关键问题在于:激活HIV感染的CD4 +T储存库细胞的激活剂都是会让整个人体免疫系统活化的。因此,如果采取目前的激活剂进行Shock&kill治疗,会使病人免疫紊乱,引起免疫风暴甚至致命。故而,Shock&Kill的疗法只在基础实验上得到成功,却无法进入临床治疗。 In terms of treatment methods, the field of shock therapy (Shock & Kill) as the basic treatment principle is widely studied in the international theory. Similar to the existing detection methods, in the Shock&Kill treatment principle, it is first necessary to activate the /Shock HIV reservoir cells, and then the Killer CD8 + T cells discover and remove the original HIV-infected CD4 + T that is activated after the virus is released. Repository cells. However, in the treatment of therapeutic methods, the key problem currently encountered is that activation of HIV-infected CD4 + T reservoir cells activates the entire body's immune system. Therefore, if the current activator is used for Shock & Kill treatment, the patient will be immune to disorder, causing an immune storm or even fatal. Therefore, Shock&Kill's therapy has only succeeded in basic experiments, but it has not been able to enter clinical treatment.
TRABD2A蛋白(TraB domain-containing protein 2A)有三个子类,在本发明之前,只有关于TRABD2A-203是细胞内Wnt信号的传导的抑制金属蛋白酶的报道,而对于TRABD2A-201和TRABD2A-202均没有任何关于其功能等信息的报道。There are three subclasses of TRABD domain-containing protein 2A. Prior to the present invention, only TRABD2A-203 was reported to inhibit the expression of Wnt signaling in cells, and none of TRABD2A-201 and TRABD2A-202. A report on information such as its function.
发明内容Summary of the invention
本发明提供了将相关物质用于检测HIV存储库细胞以及清除该细胞的用途,通过对于HIV存储库细胞进行处理以检测该细胞以及清除该细胞的方法,以及提供了筛选清除HIV存储库细胞物质的方法。The present invention provides the use of related substances for detecting and resecting HIV storage cells, by treating HIV storage cells to detect and clear the cells, and to provide screening for clearance of cellular material in the HIV reservoir. Methods.
具体地,本发明提供了一种物质在制备用于检测或清除HIV感染的细胞的试剂和/或药物的用途,其特征在于所述物质能够抑制人类TRABD蛋白活性或清除人类TRABD蛋白。In particular, the invention provides the use of a substance for the preparation of an agent and/or a medicament for detecting or eliminating HIV infected cells, characterized in that the substance is capable of inhibiting human TRABD protein activity or clearing human TRABD protein.
优选地,上述人类TRABD蛋白为TRABD2A。Preferably, the human TRABD protein described above is TRABD2A.
优选地,人类TRABD2A蛋白可以选自TRABD2A-201蛋白,TRABD2A-201蛋白的氨基酸序列如SEQ ID NO.1所示。还可以优选自TRABD2A-202蛋白,TRABD2A-202蛋白的氨基酸序列如SEQ ID NO.2所示。Preferably, the human TRABD2A protein may be selected from the TRABD2A-201 protein, and the amino acid sequence of the TRABD2A-201 protein is shown in SEQ ID NO. It is also preferred to use the TRABD2A-202 protein, and the amino acid sequence of the TRABD2A-202 protein is shown in SEQ ID NO.
进一步地,这种用于制备检测或清除HIV感染的细胞的试剂的物质可以选自小分子化合物、金属蛋白酶抑制剂、或人类TRABD蛋白特异性抗体。Further, such a substance for preparing an agent for detecting or eliminating HIV-infected cells may be selected from a small molecule compound, a metalloproteinase inhibitor, or a human TRABD protein-specific antibody.
优选地,上述小分子化合物能够与Mn 2+竞争与人类TRABD蛋白的结合。 Preferably, the small molecule compound described above is capable of competing with Mn 2+ for binding to a human TRABD protein.
优选地,上述小分子化合物是不含有Mn 2+的金属离子化合物。 Preferably, the above small molecule compound is a metal ion compound not containing Mn 2+ .
优选地,上述金属离子化合物为含有Ni 2+、Co 2+或者Zn 2+的金属离子化合物。 Preferably, the metal ion compound is a metal ion compound containing Ni 2+ , Co 2+ or Zn 2+ .
优选地,上述金属蛋白酶抑制剂为二价金属螯合剂,更优选地为1,10-邻二氮杂菲。Preferably, the above metalloproteinase inhibitor is a divalent metal chelating agent, more preferably 1,10-phenanthroline.
优选地,上述用于制备检测或清除HIV感染的细胞的试剂的物质通过RNAi方法清除细胞表面的人类TRABD蛋白。更优选地,该物质为siRNA或者shRNA。Preferably, the above-described substance for preparing an agent for detecting or eliminating HIV-infected cells removes human TRABD protein on the cell surface by an RNAi method. More preferably, the substance is siRNA or shRNA.
优选地,上述siRNA转染所述细胞。Preferably, the siRNA described above transfects the cells.
优选地,上述siRNA通过电穿孔法或者串联法转染所述细胞。Preferably, the siRNA described above is transfected into the cells by electroporation or tandem.
优选地,上述shRNA转染所述细胞。Preferably, the shRNA is transfected into the cell.
本发明还提供一种载体在制备用于检测或清除HIV感染的细胞的试剂和/或药物的用途,其特征在于所述载体包含上述用于制备检测或清除HIV感染的细胞的试剂和/或药物的物质。The invention also provides the use of a vector for the preparation of an agent and/or a medicament for detecting or eliminating HIV infected cells, characterized in that the vector comprises the above-mentioned reagents for preparing cells for detecting or eliminating HIV infection and/or The substance of the drug.
本发明还提供一种检测或清除被HIV感染的细胞的方法,该方法包括,抑制所述细胞中人类TRABD蛋白活性或清除所述细胞中人类TRABD蛋白,检测所述细胞释放的HIV病毒以检测和/或消除所述细胞。The present invention also provides a method for detecting or eliminating HIV-infected cells, the method comprising: inhibiting human TRABD protein activity in the cells or clearing human TRABD protein in the cells, detecting HIV virus released by the cells for detection And/or eliminate the cells.
优选地,该方法使用上述任一用于制备检测或清除HIV感染的细胞的试剂处理所述的细胞。Preferably, the method treats said cells using any of the reagents described above for the preparation of cells for detecting or eliminating HIV infection.
优选地,所述细胞为HIV储存库细胞,包括但不限于为HIV感染的CD4 +T细胞,进一步地,为HIV感染的静息的CD4 +T细胞,还可以是HIV感染的外周血细胞、NK细胞、脑细胞。 Preferably, the cells are HIV depot cells, including but not limited to HIV-infected CD4 + T cells, further, HIV-infected resting CD4 + T cells, and may also be HIV-infected peripheral blood cells, NK Cells, brain cells.
本发明还提供一种物质在制备提高细胞抵抗HIV和/或SIV感染能力或者降低被感染细胞释放HIV和/或SIV子代病毒的试剂的用途,其特征在于所述物质为TRABD蛋白的表达质粒。The invention also provides the use of a substance for the preparation of an agent for increasing the ability of a cell to resist HIV and/or SIV infection or for reducing the release of HIV and/or SIV progeny virus by an infected cell, characterized in that the substance is an expression plasmid for TRABD protein. .
优选地,上述TRABD蛋白的表达质粒是TRABD2A蛋白的表达质粒。Preferably, the expression plasmid of the above TRABD protein is an expression plasmid of TRABD2A protein.
优选地,上述TRABD2A蛋白的表达质粒是人类、灵长类或哺乳类动物的TRABD2A蛋白的表达质粒。Preferably, the expression plasmid of the above TRABD2A protein is an expression plasmid of TRABD2A protein of human, primate or mammalian.
优选地,上述TRABD蛋白的表达质粒还可以是TRABD2B蛋白的表达质粒。Preferably, the expression plasmid of the above TRABD protein may also be an expression plasmid of the TRABD2B protein.
优选地,上述TRABD2B蛋白的表达质粒是人类、灵长类或哺乳类动物的TRABD2B蛋白的表达质粒。Preferably, the expression plasmid of the above TRABD2B protein is an expression plasmid of TRABD2B protein of human, primate or mammalian.
优选地,上述细胞是已经感染了HIV和/或SIV的细胞。Preferably, the above cells are cells that have been infected with HIV and/or SIV.
优选地,上述细胞是已经感染了HIV和/或SIV的CD4 +T细胞。 Preferably, the above cells are CD4 + T cells that have been infected with HIV and/or SIV.
本发明还提供一种载体在制备提高细胞抵抗HIV和/或SIV感染能力或者降低被感染细胞释放HIV和/或SIV子代病毒的试剂的用途,其特征在于所述载体包含上述用于制备检测或清除HIV感染的细胞的试剂的物质。The invention also provides the use of a vector for the preparation of an agent for increasing the ability of a cell to resist HIV and/or SIV infection or for reducing the release of HIV and/or SIV progeny virus by an infected cell, characterized in that the carrier comprises the above-described preparation test. Or a substance that removes reagents from HIV-infected cells.
本发明还提供一种筛选能够清除或检测被HIV和/或SIV感染的细胞的物质的方法,所述方法包括筛选出能够抑制TRABD蛋白活性或清除TRABD蛋白的物质。The present invention also provides a method of screening for a substance capable of scavenging or detecting cells infected with HIV and/or SIV, the method comprising screening for a substance capable of inhibiting TRABD protein activity or scavenging TRABD protein.
优选地,上述物质能够抑制人类、灵长类或哺乳类动物TRABD蛋白活性,或清除人类、灵长类或哺乳类动物TRABD蛋白。Preferably, the above substances are capable of inhibiting TRABD protein activity in humans, primates or mammals, or scavenging human, primate or mammalian TRABD proteins.
优选地,上述方法包括进行细胞实验和/或动物试验,以筛选出能够抑制TRABD蛋白活性或清除TRABD蛋白的物质。Preferably, the above method comprises performing a cell assay and/or an animal assay to screen for a substance capable of inhibiting TRABD protein activity or clearing TRABD protein.
优选地,在上述方法中使用猕猴进行所述细胞实验和/或动物实验。Preferably, the macaques are used in the above methods for the cell experiments and/or animal experiments.
具体而言,本发明通过采用相关物质抑制或者清除被HIV-1和/或HIV-2感染的HIV存储库细胞的TRABD2A蛋白,以使得这些HIV存储库细胞大量释放HIV子代病毒,进而能够对于这些细胞进行检测。同时,本发明还通过采用相关复制抑制或清除上述人类TRABD2A蛋白,能够促进HIV存储库细胞释放HIV病毒,进而使得这些细胞,能够被人体免疫系统(譬如CD8 +T等Killer细胞特异性的识别)或者相关抗病毒药物所识别,以达到清除HIV 存储库细胞,进一步治疗HIV-1和/或HIV-2感染的目的。进一步的,本发明还通过增加TRABD2A蛋白或者TRABD2B蛋白(TraB domain-containing protein 2B)在被感染的细胞中的表达,能够抑制HIV-1和/或HIV-2病毒在被感染的细胞内复制完成并释放。 In particular, the present invention inhibits or eliminates the TRABD2A protein of HIV-1 cells infected with HIV-1 and/or HIV-2 by using related substances, so that these HIV storage cells release a large amount of HIV progeny virus, thereby enabling These cells are tested. At the same time, the present invention can also promote the release of HIV virus from HIV storage cells by inhibiting or eliminating the above-mentioned human TRABD2A protein by using related replication, thereby enabling these cells to be specifically recognized by the human immune system (such as CD8 + T and other Killer cells). Or related antiviral drugs are identified to achieve the purpose of clearing HIV repository cells for further treatment of HIV-1 and/or HIV-2 infection. Further, the present invention can also inhibit the replication of HIV-1 and/or HIV-2 virus in infected cells by increasing the expression of TRABD2A protein or TRABD2B protein (TraB domain-containing protein 2B) in infected cells. And released.
另外,本发明还提供筛选清除HIV存储库细胞物质的方法。HIV没有动物模型,小鼠不能被HIV感染,所以相当于HIV研究工作,没有动物模型。为了建立动物模型,目前研究者用SIV去感染猕猴(Macaque),建立了相似的艾滋病症状,故而成为了唯一代替HIV的活体实验。目前,我们发现,TRABD在猕猴细胞中,也能对抗SIV。因此,能够通过研究不同物质针对被SIV感染猕猴的猕猴TRABD的作用以及调整相关的症状表现,来替代研究这些物质对于清除人类HIV存储库细胞以及调整相关HIV感染症状的表现。这为HIV、SIV药物筛选提供一个有效的高通量的方法。而猩猩能够被HIV感染,随着研究的深入以及大猩猩的临床症状可测视性的发展,大猩猩有潜力成为HIV动物实验模型。In addition, the invention also provides methods of screening for clearance of cellular material in an HIV depot. HIV has no animal model, and mice cannot be infected with HIV, so it is equivalent to HIV research work, and there is no animal model. In order to establish animal models, researchers have used SIV to infect macaques (Macaque) and established similar AIDS symptoms, making it the only living laboratory to replace HIV. At present, we have found that TRABD can also fight SIV in macaque cells. Therefore, it is possible to study the effects of these substances on the clearance of human HIV reservoir cells and to adjust the symptoms of HIV infection by studying the effects of different substances on rhesus monkey TRABD infected with SIV and adjusting related symptom manifestations. This provides an effective high-throughput method for screening HIV and SIV drugs. Orangutans can be infected with HIV. With the deepening of research and the development of gorilla clinical symptoms, gorillas have the potential to become experimental models of HIV animals.
我们发现,相对于能被病毒感染而大量产生并释放HIV-1和/或HIV-2病毒的细胞,HIV存储库细胞表面特异性的含有大量的细胞膜金属蛋白酶人类TRABD2A蛋白。该TRABD2A蛋白能够阻止病毒的释放,即TRABD2A蛋白正是HIV存储库细胞极少释放病毒的原因。进一步的,TRABD需要结合锰离子去切除病毒衣壳蛋白,也就是说它有两个活性中心,一个中心是结合离子的,比如Mn 2+;另一个中心是结合病毒Gag蛋白分子的。本发明通过采用TRABD抗体、金属蛋白酶抑制剂,譬如1,10-邻二氮杂菲(1,10-phenanthroline)、或者与Mn 2+竞争结合TRABD2A蛋白的其他小分子化合物,譬如金属离子Co 2+、Ni 2+或者Zn 2+对TRABD2A蛋白活性进行抑制后,会使得HIV存储库细胞也开始释放大量的病毒。实际上,与TRABD结合的小分子都能够达到促进病毒释放,达到治疗的目的。并且,上述小分子化合物与TRABD2A的不同子类,即TRABD2A-201、TRABD2A-202以及TRABD2A-203的结合能力以及活性抑制能力基本一致。同样,采用RNAi方式清除TRABD2A蛋白后,会使得HIV存储库细胞也会开始释放大量的 病毒。且类似的,RNAi方式对于TRABD2A的不同子类,即TRABD2A-201、TRABD2A-202以及TRABD2A-203的清除效果也基本一致。从而使得HIV存储库细胞能够被特异性的检测出来,以及在体内被免疫系统或者相关抗病毒药物所识别和清除。 We have found that HIV storage cells are surface-specific and contain a large amount of cell membrane metalloproteinase human TRABD2A protein relative to cells that are capable of being produced by viral infection and releasing HIV-1 and/or HIV-2 viruses. The TRABD2A protein prevents the release of the virus, ie the TRABD2A protein is responsible for the minimal release of the virus from the HIV reservoir cells. Further, TRABD needs to bind manganese ions to remove the viral capsid protein, that is, it has two active centers, one center is bound to ions, such as Mn 2+ ; the other center is bound to viral Gag protein molecules. The present invention employs TRABD antibodies, metalloproteinase inhibitors, such as 1,10-phenanthroline, or other small molecule compounds that compete with Mn 2+ for binding to the TRABD2A protein, such as metal ion Co 2 The inhibition of TRABD2A protein activity by + , Ni 2+ or Zn 2+ will cause the HIV reservoir cells to also release a large amount of virus. In fact, small molecules that bind to TRABD are able to achieve viral release for therapeutic purposes. Further, the above small molecule compound has substantially the same binding ability and activity inhibiting ability as TRABD2A-201, TRABD2A-202, and TRABD2A-203, which are different subclasses of TRABD2A. Similarly, the removal of TRABD2A by RNAi will cause the HIV reservoir cells to begin releasing large amounts of virus. And similarly, the RNAi method is also basically the same for the different subclasses of TRABD2A, namely TRABD2A-201, TRABD2A-202 and TRABD2A-203. This allows HIV reservoir cells to be specifically detected and recognized and cleared in the body by the immune system or related antiviral drugs.
虽然HIV存储库细胞本身并不含有大量的TRABD2B蛋白,但是TRABD2B蛋白也具有与TRABD2A蛋白相似的功能。即TRABD2B蛋白也能够阻止HIV-1、HIV-2以及SIV等慢病毒的复制和释放。并且,类似于TRABD2A蛋白,TRABD2B蛋白的抗病毒活性也会被TRABD抗体、金属蛋白酶抑制剂、和金属离子Co 2+、Ni 2+、Zn 2+,以及其它能够结合TRABD2B蛋白的小分子所抑制。因此,整个TraB家族都很有可能具有类似的抑制病毒复制和释放的作用。 Although the HIV reservoir cells themselves do not contain a large amount of TRABD2B protein, the TRABD2B protein also has a similar function as the TRABD2A protein. That is, TRABD2B protein can also prevent the replication and release of lentiviruses such as HIV-1, HIV-2 and SIV. Moreover, similar to the TRABD2A protein, the antiviral activity of the TRABD2B protein is also inhibited by TRABD antibodies, metalloproteinase inhibitors, and metal ions Co 2+ , Ni 2+ , Zn 2+ , and other small molecules capable of binding to the TRABD2B protein. . Therefore, the entire TraB family is likely to have similar effects of inhibiting viral replication and release.
相对于现有的检测方法,即采取的通过添加类似植物凝集素等激活T细胞的物质,使得HIV存储库细胞被激活并且开始释放子代病毒,进而对其数量进行检测的方法,本发明的优势在于能够不通过激活HIV存储库细胞而促发其释放的大量子代病毒,从而提供能够在生理条件下检测这些细胞,所得到的检测数据具有临床指标,更佳灵敏和精准,对临床指导用药更具参考价值。Compared with the existing detection method, a method of detecting the amount of the HIV storage cell by adding a substance such as a plant lectin that activates T cells, thereby causing the HIV storage cell to be activated and starting to release the progeny virus, the method of the present invention The advantage is that it can promote the release of a large number of progeny viruses without activating the HIV storage cells, thereby providing the ability to detect these cells under physiological conditions, and the obtained test data has clinical indicators, which are more sensitive and precise, and provide clinical guidance. Medication is more valuable.
同时,本发明提出了新的检测标准,即抽取病毒潜伏病人5-10ml外周血,提取外周血单核细胞PBMCs,或者CD4 +T储存库细胞,经TRABD抑制剂处理12-24小时,可检测培养基上清具有感染性的病毒颗粒数量,来确定不同病人HIV感染的CD4 +T储存库细胞数量的大小。该检测方法能够缩短HIV检测窗口期:HIV早期感染人体后,血液中检测不到病毒,需要一至数月才能在血液中检测到抗体。用本发明中提供的方法,HIV感染极早期就能通过细胞水平,检测到微量的感染性病毒,为早期判断HIV感染以及极早期治疗HIV提供保证。 At the same time, the present invention proposes a new detection standard, that is, extracting 5-10 ml of peripheral blood of a virus latent patient, extracting peripheral blood mononuclear cell PBMCs, or CD4 + T reservoir cells, and treating with TRABD inhibitor for 12-24 hours, can be detected. The medium supernatant has an infectious viral particle count to determine the number of HIV-infected CD4 + T reservoir cells in different patients. The detection method can shorten the HIV detection window period: after the early infection of the human body, the virus is not detected in the blood, and it takes one to several months to detect the antibody in the blood. With the method provided by the present invention, HIV infection can detect a small amount of infectious virus at the cell level at an early stage, which provides a guarantee for early detection of HIV infection and early treatment of HIV.
另一方面,本发明还发现只要在HIV存储库细胞中,抑制TRABD2A 蛋白的抗病毒活性,潜伏病毒就能完成包装,并从这些细胞中释放,并在HIV存储库细胞表面呈递病毒抗原,进而促发CD8 +T等Killer细胞特异性的识别,清除这些细胞,能够达到清除HIV存储库细胞而彻底治愈病毒感染的目的。同时,这个激活潜伏病毒和杀死HIV存储库细胞过程是不需要细胞活化的,故而完全满足震动疗法(Shock&Kill),能够进入临床治疗。即相对于目前也处于研究状态的Shock&kill治疗方法来说,本发明的优势在于并不会产生由于需要激活HIV存储库细胞而激活整个人体免疫系统,并可能导致病人死亡的不利后果。故而,本发明中的治疗HIV存储库细胞的策略定义为压迫疗法(Push&Kill)。 In another aspect, the present invention also finds that as long as the antiviral activity of the TRABD2A protein is inhibited in the HIV reservoir cells, the latent virus can be packaged, released from these cells, and presented with a viral antigen on the surface of the HIV storage cell. It promotes the specific recognition of Killer cells such as CD8 + T, and clears these cells, which can achieve the purpose of clearing the HIV storage cells and completely curing the virus infection. At the same time, this process of activating latent viruses and killing HIV storage cells does not require cell activation, so it fully satisfies shock therapy (Shock & Kill) and can enter clinical treatment. That is, the present invention has an advantage in that it does not cause an activation of the entire human immune system due to the need to activate the HIV reservoir cells, and may cause adverse consequences for the death of the patient, relative to the Shock & kill treatment method which is currently under study. Therefore, the strategy for treating HIV reservoir cells in the present invention is defined as compression therapy (Push & Kill).
另外,除了通过抑制或清除HIV存储库细胞的TRABD2A蛋白,使得这些细胞释放病毒从被killer T细胞等人体免疫细胞清除的方式,本发明还能够通过增强TRABD的表达,在细胞内直接抑制病毒的释放。譬如,能够通过TRABD基因的真核细胞表达,抑制细胞内病毒的产生。In addition, in addition to the method of inhibiting or eliminating the TRABD2A protein of the HIV reservoir cells, such cells release the virus from the human immune cells such as killer T cells, the present invention can also directly inhibit the virus in the cells by enhancing the expression of TRABD. freed. For example, it is possible to inhibit the production of intracellular viruses by expression of eukaryotic cells of the TRABD gene.
附图说明DRAWINGS
图1-1:实施例1中使用TRABD2A蛋白表达载体转染293T细胞后,上清液中HIV-1的含量对比图。Figure 1-1: Comparison of the content of HIV-1 in the supernatant after transfection of 293T cells with the TRABD2A protein expression vector in Example 1.
图1-2:实施例1中使用TRABD2A蛋白表达载体转染293T细胞后,p24含量对比图。Figure 1-2: Comparison of p24 content after transfection of 293T cells with TRABD2A protein expression vector in Example 1.
图1-3:实施例1中使用TRABD2A蛋白表达载体转染293T细胞后,病毒粒子有关的基因组RNA含量对比图。Figure 1-3: Comparison of virion-related genomic RNA content of 293T cells transfected with TRABD2A protein expression vector in Example 1.
图1-4:实施例1中使用TRABD2A蛋白表达载体转染293T细胞后,HIV Gag RNA含量对比图。Figure 1-4: Comparison of HIV Gag RNA content after transfection of 293T cells using the TRABD2A protein expression vector in Example 1.
图1-5:实施例1中使用TRABD2A蛋白表达载体转染293T细胞后,HIV-1 Gag、gp120、TRABD2A蛋白和磷酸甘油醛脱氢酶(GAPDH)对比图。Figure 1-5: Comparison of HIV-1 Gag, gp120, TRABD2A protein and glyceraldehyde phosphate dehydrogenase (GAPDH) after transfection of 293T cells with TRABD2A protein expression vector in Example 1.
图1-6:实施例1中使用TRABD2A蛋白表达载体转染293T细胞后,上清液中HBV病毒含量对比图。Figure 1-6: Comparison of HBV virus content in supernatant after transfection of 293T cells with TRABD2A protein expression vector in Example 1.
图1-7:实施例1中使用TRABD2A蛋白表达载体转染293T细胞后,TRABD2A和磷酸甘油醛脱氢酶对比图。Figure 1-7: Comparison of TRABD2A and glyceraldehyde phosphate dehydrogenase after transfection of 293T cells using the TRABD2A protein expression vector in Example 1.
图2-1:实施例2中使用各类TRABD蛋白表达载体转染293T细胞后,上清液中HIV-1的含量对比图。Figure 2-1: Comparison of the content of HIV-1 in the supernatant after transfection of 293T cells with various TRABD protein expression vectors in Example 2.
图2-2:实施例2中使用各类TRABD蛋白表达载体转染293T细胞后,外源TRABD蛋白和磷酸甘油醛脱氢酶对比图。Figure 2-2: Comparison of exogenous TRABD protein and glyceraldehyde phosphate dehydrogenase after transfection of 293T cells using various TRABD protein expression vectors in Example 2.
图3-1:实施例3中使用TRABD2A和2B蛋白表达载体转染293T细胞后,上清液中VSV-G、HIV-1 NL4.3或者-89.6的含量对比图。 Figure 3-1: Comparison of the contents of VSV-G, HIV-1 NL4.3 or -89.6 in the supernatant after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
图3-2:实施例3中使用TRABD2A和2B蛋白表达载体转染293T细胞后,HIV Gag RNA含量对比图。Figure 3-2: Comparison of HIV Gag RNA content after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
图3-3:实施例3中使用TRABD2A和2B蛋白表达载体转染293T细胞后,上清液中HIV-1 BH-10含量对比图。 Figure 3-3: Comparison of HIV-1 BH-10 content in the supernatant after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
图3-4:实施例3中使用TRABD2A和2B蛋白表达载体转染293T细胞后,上清液中HIV-1 BaL含量对比图。 Figure 3-4: Comparison of HIV-1 BaL content in supernatants after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 3.
图3-5:实施例3中使用TRABD 2B蛋白表达载体转染293T细胞后,上清液中HIV-1 NL4.3含量对比图。 Figure 3-5: Comparison of HIV-1 NL4.3 content in supernatant after transfection of 293T cells with TRABD 2B protein expression vector in Example 3.
图3-6:实施例3中使用TRABD 2B蛋白表达载体转染293T细胞后,HIV Gag RNA含量对比图。Figure 3-6: Comparison of HIV Gag RNA content after transfection of 293T cells using the TRABD 2B protein expression vector in Example 3.
图3-7:实施例3中使用TRABD 2B蛋白表达载体转染293T细胞后,TRABD2B,Gag和磷酸甘油醛脱氢酶含量图。Figure 3-7: TRABD2B, Gag and glyceraldehyde phosphate dehydrogenase content profiles after transfection of 293T cells with the TRABD 2B protein expression vector in Example 3.
图4-1:实施例4中使用TRABD2A和2B蛋白表达载体转染293T细胞后,上清液中CCR5 HIV-1 AD8、HIV-1 89.6、SIV mac239含量对比图。 Figure 4-1: Comparison of CCR5 HIV-1 AD8 , HIV-1 89.6 , and SIV mac239 in the supernatant after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 4.
图4-2:实施例4中使用TRABD2A和2B蛋白表达载体转染293T细胞后,上清液中HIV-2 ST含量对比图。 Figure 4-2: Comparison of HIV-2 ST levels in supernatants after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 4.
图5-1:实施例5中使用TRABD2A和2B蛋白表达载体转染293T细胞后,1,10-邻二氮杂菲对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验(western blot)图。Figure 5-1: Effect of 1,10-phenanthroline on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A and 2B protein expression vectors in Example 5 and western blotting (western blotting) Blot) map.
图5-2:实施例5中使用TRABD2A表达载体转染293T细胞后,Co 2+对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-2: Effect of Co 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
图5-3:实施例5中使用TRABD2A表达载体转染293T细胞后,Ni 2+对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-3: Effect of Ni 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
图5-4:实施例5中使用TRABD2A表达载体转染293T细胞后,Mn 2+ 对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-4: Effect of Mn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
图5-5:实施例5中使用TRABD2A表达载体转染293T细胞后,Zn 2+对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-5: Effect of Zn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2A expression vector in Example 5 and immunoblot assay.
图5-6:实施例5中使用TRABD2B表达载体转染293T细胞后,Co 2+对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-6: Effect of Co 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
图5-7:实施例5中使用TRABD2B表达载体转染293T细胞后,Ni 2+对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-7: Effect of Ni 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
图5-8:实施例5中使用TRABD2B表达载体转染293T细胞后,Mn 2+对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-8: Effect of Mn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
图5-9:实施例5中使用TRABD2B表达载体转染293T细胞后,Zn 2+对于TRABD蛋白抑制HIV-1感染的作用的影响图以及免疫印迹试验图。 Figure 5-9: Effect of Zn 2+ on the inhibition of HIV-1 infection by TRABD protein after transfection of 293T cells with TRABD2B expression vector in Example 5 and immunoblot assay.
图6:实施例6中使用Ni 2+,Co 2+,二价金属螯合剂,以及TRABD2A蛋白的特异性单克隆抗体处理HIV-1、HIV-2的CD4 +T储存库细胞得到的上清液中HIV-1和HIV-2含量对比图。 Figure 6: The supernatant obtained by treating the CD4 + T reservoir cells of HIV-1 and HIV-2 with a specific monoclonal antibody of Ni 2+ , Co 2+ , a divalent metal chelating agent, and TRABD2A protein in Example 6. Comparison of HIV-1 and HIV-2 levels in the liquid.
图7:实施例7中使用Ni 2+,Co 2+,二价金属螯合剂,以及TRABD2A蛋白的特异性单克隆抗体处理HIV-1病人血液中的CD4 +T储存库细胞得到的上清液中HIV-1含量对比图。 Figure 7: Supernatant obtained from the treatment of CD4 + T reservoir cells in the blood of HIV-1 patients using a specific monoclonal antibody of Ni 2+ , Co 2+ , a divalent metal chelating agent, and TRABD2A protein in Example 7. Comparison of HIV-1 levels.
图8-1:实施例8中使用不同Ni 2+浓度对于从各个病人体内获得的激活或者未激活的CD4 +T储存库细胞进行处理,并获得的上清液中HIV-1含量对比图。 Figure 8-1: Treatment of activated or non-activated CD4 + T reservoir cells obtained from individual patients using different Ni 2+ concentrations in Example 8 and comparison of HIV-1 levels in the supernatant obtained.
图8-2:实施例8中使用不同Ni 2+浓度对于从各个病人体内获得的激活或者未激活的CD4 +T储存库细胞进行处理,并获得的TRABD2A RNA含量对比图。 Figure 8-2: Treatment of activated or inactivated CD4 + T reservoir cells obtained from individual patients using different Ni&lt;2+ concentrations in Example 8 and comparison of TRABD2A RNA content obtained.
图8-3:实施例8中使用不同Ni 2+浓度对于从各个病人体内获得的激活或者未激活的CD4 +T储存库细胞进行处理,并获得的CD4 +T表面标记CD69表达水平对比图。 Figure 8-3: Comparison of the levels of CD4 + T surface marker CD69 expression obtained by treatment with activated or inactivated CD4 + T reservoir cells obtained from individual patients using different Ni 2+ concentrations in Example 8.
图8-4:实施例8中使用不同Ni 2+浓度对于从各个病人体内获得CD4 +T储存库细胞进行处理,并获得的上清液中HIV-1含量对比图。 Figure 8-4: Comparison of HIV-1 levels in the supernatant obtained by treating CD4 + T reservoir cells obtained from each patient using different Ni 2+ concentrations in Example 8.
图9-1:实施例9中使用从各个捐献者体内获得CD4 +T储存库细胞,在激活和不激活的情况下,得到的TRABD2A含量对比图。 Figure 9-1: Comparison of the TRABD2A content obtained in Example 9 using CD4 + T reservoir cells obtained from individual donors with and without activation.
图9-2:实施例9中使用不同Ni 2+浓度处理注入荧光素酶(luciferase)的HIV感染的CD4 +T储存库细胞后,得到的上清液中HIV-1含量对比图。 Figure 9-2: Comparison of HIV-1 levels in supernatants obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different concentrations of Ni 2+ in Example 9.
图9-3:实施例9中使用不同Ni 2+浓度处理注入荧光素酶的HIV感染的CD4 +T储存库细胞后,得到的荧光素酶、TRABD2A RNA和Gag RNA含量对比图。 Figure 9-3: Comparison of luciferase, TRABD2A RNA and Gag RNA content obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different Ni 2+ concentrations in Example 9.
图9-4:实施例9中使用不同Co 2+浓度处理注入荧光素酶的HIV感染的CD4 +T储存库细胞后,得到的上清液中HIV-1含量对比图,以及荧光素酶、TRABD2A RNA和Gag RNA含量对比图。 Figure 9-4: Comparison of HIV-1 levels in the supernatant obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different Co 2+ concentrations in Example 9, and luciferase, Comparison of TRABD2A RNA and Gag RNA content.
图9-5:实施例9中使用不同1,10-邻二氮杂菲浓度处理注入荧光素酶的HIV感染的CD4 +T储存库细胞后,得到的上清液中HIV-1含量对比图,以及荧光素酶、TRABD2A RNA和Gag RNA含量对比图。 Figure 9-5: Comparison of HIV-1 levels in the supernatant obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different concentrations of 1,10-phenanthroline in Example 9. , as well as a comparison of luciferase, TRABD2A RNA and Gag RNA content.
图9-6:实施例9中使用不同Ni 2+、Co 2+、1,10-邻二氮杂菲浓度处理注入荧光素酶的HIV感染的CD4 +T储存库细胞后,得到的细胞表面标记CD69表达水平对比图。 Figure 9-6: Cell surface obtained after treatment of HIV-infected CD4 + T reservoir cells injected with luciferase using different Ni 2+ , Co 2+ , 1,10-phenanthroline concentrations in Example 9. Mark the CD69 expression level comparison chart.
图10-1:实施例10中使用不同含量Ni 2+,Co 2+处理HIV-2感染的CD4 +T储存库细胞后,得到的上清液中HIV-2含量对比图。 Figure 10-1: Comparison of HIV-2 levels in the supernatant obtained after treatment of HIV-2 infected CD4 + T reservoir cells with different contents of Ni 2+ , Co 2+ in Example 10.
图10-2:实施例10中使用不同含量Ni 2+,Co 2+处理HIV-2感染的CD4 +T储存库细胞后,得到的TRABD2A RNA含量对比图。 Figure 10-2: Comparison of RNA content of TRABD2A obtained after treatment of HIV-2 infected CD4 + T reservoir cells with different contents of Ni 2+ and Co 2+ in Example 10.
图11-1:实施例11中使用小干扰RNA(siRNA)处理HIV-2感染的CD4 +T储存库细胞后,得到的上清液中HIV-2含量对比图。 Figure 11-1: Comparison of HIV-2 levels in supernatants obtained after treatment of HIV-2 infected CD4 + T reservoir cells using small interfering RNA (siRNA) in Example 11.
图11-2:实施例11中使用小干扰RNA处理HIV-2感染的CD4 +T储存库细胞后,得到的TRABD2A RNA含量对比图。 Figure 11-2: Comparison of RNA content of TRABD2A obtained after treatment of HIV-2 infected CD4 + T reservoir cells with small interfering RNA in Example 11.
图12-1:实施例12中使用小干扰RNA通过电穿孔(siRNAs electroporation)处理从捐献者体内获得的HIV-1感染的CD4 +T储存库细胞后,得到的上清液中HIV-1含量对比图。 Figure 12-1: HIV-1 levels in supernatants obtained after treatment of HIV-1 infected CD4 + T depot cells obtained from donors by electroporation (siRNAs electroporation) using the small interfering RNA in Example 12. Comparison chart.
图12-2:实施例12中使用小干扰RNA通过电穿孔处理从捐献者体内获得的HIV-1感染的CD4 +T储存库细胞后,得到的上清液中HIV-1逆转录(reverse transcriptase,RT)活性对比图。 Figure 12-2: HIV-1 reversed transcription (reverse transcriptase) in supernatant obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors by electroporation using small interfering RNA in Example 12. , RT) activity comparison chart.
图12-3:实施例12中使用小干扰RNA通过电穿孔处理从捐献者体内获得的HIV-1感染的CD4 +T储存库细胞后,得到的HIV-1 Gag RNA含量对比 图。 Figure 12-3: Comparison of HIV-1 Gag RNA content obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors by electroporation using small interfering RNA in Example 12.
图12-4:实施例12中使用小干扰RNA通过电穿孔处理从捐献者体内获得的HIV-1感染的CD4 +T储存库细胞后,得到的TRABD2A RNA含量对比图。 Figure 12-4: Comparison of RNA content of TRABD2A obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors by electroporation using small interfering RNA in Example 12.
图12-5:实施例12中使用小干扰RNA通过串联法(tandem siRNA electroporation)处理从捐献者体内获得的HIV-1感染的CD4 +T储存库细胞后,得到的上清液中HIV-1含量对比图。 Figure 12-5: HIV-1 infected CD4 + T reservoir cells obtained from donors after treatment with tandem siRNA electroporation in Example 12, and the resulting supernatant was HIV-1 Content comparison chart.
图12-6:实施例12中使用小干扰RNA通过串联法处理从捐献者体内获得的HIV-1感染的CD4 +T储存库细胞后,得到的TRABD2A RNA含量对比图。 Figure 12-6: Comparison of RNA content of TRABD2A obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors using a small interfering RNA in Example 12.
图12-7:实施例12中使用小干扰RNA通过串联法处理从捐献者体内获得的HIV-1感染的CD4 +T储存库细胞后,得到的HIV-1 Gag RNA含量对比图。 Figure 12-7: Comparison of HIV-1 Gag RNA content obtained after treatment of HIV-1 infected CD4 + T reservoir cells obtained from donors using a small interfering RNA in Example 12.
图13-1:实施例13中使得被激活的HIV-1感染的CD4 +T储存库细胞慢慢恢复静息状态中,得到的TRABD2A RNA含量对比图。 Figure 13-1: Comparison of the obtained TRABD2A RNA content in Example 13 in which the activated HIV-1 infected CD4 + T reservoir cells were slowly returned to rest.
图13-2:实施例13中使用shRNAs处理激活的HIV-1感染的CD4 +T储存库细胞,并使其慢慢恢复静息状态中,得到的CD69表面标记含量对比图。 Figure 13-2: Comparison of the CD69 surface marker content of activated HIV-1 infected CD4 + T reservoir cells treated with shRNAs in Example 13 and allowed to slowly return to rest.
图13-3:实施例13中使用shRNAs处理激活的HIV-1感染的CD4 +T储存库细胞,并使其慢慢恢复静息状态中,得到的上清液中HIV-1含量对比图。 Figure 13-3: Comparison of HIV-1 levels in the supernatant obtained by treatment of activated HIV-1 infected CD4 + T reservoir cells using shRNAs in Example 13 and allowing them to slowly return to rest.
图13-4:实施例13中使用shRNAs处理激活的HIV-1感染的CD4 +T储存库细胞,并使其慢慢恢复静息状态中,得到的Gag RNA含量对比图。 Figure 13-4: Comparison of the Gag RNA content obtained by treatment of activated HIV-1 infected CD4 + T reservoir cells with shRNAs in Example 13 and allowing them to slowly return to rest.
图13-5:实施例13中使用shRNAs处理激活的HIV-1感染的CD4 +T储存库细胞,并使其慢慢恢复静息状态中,得到的TRABD2A RNA含量对比图。 Figure 13-5: Comparison of the TRABD2A RNA content obtained by treatment of activated HIV-1 infected CD4 + T reservoir cells with shRNAs in Example 13 and allowing them to slowly return to rest.
图14-1:实施例14中分别将TRABD2A蛋白和TRABD2B蛋白的表达质粒导入HEK293T细胞,并分别用HIV-1、HIV-2和SIV mac239感染上述细胞后,获得的上清液中HIV-1、HIV-2和SIV mac239含量对比图。 Figure 14-1: In Example 14, the expression plasmids of TRABD2A protein and TRABD2B protein were introduced into HEK293T cells, respectively, and the cells were infected with HIV-1, HIV-2 and SIV mac239 , respectively, and the obtained supernatant was HIV-1. Comparison of HIV-2 and SIV mac239 content.
图14-2:实施例14中分别将HIV-1病毒、HIV-2病毒、SIV病毒、TRABD2A蛋白和TRABD2B蛋白的表达质粒导入HEK293T细胞后,获得的上清液中HIV-1、HIV-2和SIV含量对比图。Figure 14-2: In Example 14, the expression plasmids of HIV-1 virus, HIV-2 virus, SIV virus, TRABD2A protein and TRABD2B protein were introduced into HEK293T cells, respectively, and the obtained supernatants were HIV-1 and HIV-2. Comparison with SIV content.
图15:实施例16中,血浆中检测不出病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内分离的外周血细胞(PBMCs),用TRABD2A的单克隆blocking抗体处理72小时后,HIV-1储存库细胞的含量情况。Figure 15: Peripheral blood cells (PBMCs) isolated from HIV-1 infected patients whose viral load (Viral Load < 20 copies/mL) was not detected in plasma, and treated with monoclonal blocking antibody of TRABD2A for 72 hours. , the content of HIV-1 reservoir cells.
图16:实施例17中,将血浆中检测不出病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内分离的外周血细胞(PBMCs)除去和不除去CD8 +T免疫细胞,并用TRABD2A的单克隆blocking抗体处理72小时后,HIV-1储存库细胞的含量情况。 Figure 16: In Example 17, peripheral blood cells (PBMCs) isolated from HIV-1 infected patients with no viral load (Viral Load < 20 copies/mL) were removed and CD8 + T immune cells were removed and used. The content of HIV-1 reservoir cells after 72 hours of TRABD2A monoclonal blocking antibody treatment.
图17:实施例18中,将血浆中检测不出病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内分离的外周血细胞(PBMCs)除去和不除去CD8 +T免疫细胞,并用TRABD2A和PD-1的blocking抗体处理72小时后,HIV-1储存库细胞的含量情况。 Figure 17: In Example 18, peripheral blood cells (PBMCs) isolated from HIV-1 infected patients in which no viral load (Viral Load < 20 copies/mL) was detected in plasma were removed and CD8 + T immune cells were not removed and used. The content of HIV-1 depot cells after 72 hours of treatment with TRABD2A and PD-1 blocking antibodies.
图18:实施例19中,将血浆中检测不出病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内分离的resting CD4 +T和resting CD8 +T细胞进行体外培养,CD4 +T细胞用TRABD2A的blocking抗体处理72小时后,将CD4 +T细胞和用Gag多肽群活化CD8 +T细胞共培养5天,HIV-1储存库细胞的含量情况。 Figure 18: In Example 19, resting CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients with no viral load (Viral Load < 20 copies/mL) were cultured in vitro, CD4 + T cells were treated with the blocking antibody TRABD2A 72 h, CD4 + T cells with a Gag polypeptide and the activated CD8 + T cell populations were cultured for 5 days, the content of the case of HIV-1 cell repository.
图19:实施例20中,将血浆中检测不出病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内分离的resting CD4 +T和resting CD8 +T细胞进行体外培养,CD4 +T细胞用TRABD2A的blocking抗体处理72小时后,将CD4 +T细胞和用Gag多肽群活化并用PD-1的blocking抗体处理过的CD8 +T细胞共培养5天,HIV-1储存库细胞的含量情况。 Figure 19: In Example 20, resting CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients with no viral load (Viral Load < 20 copies/mL) were cultured in vitro, CD4 + T cells treated with the blocking antibody TRABD2A 72 h, CD4 + T cells and activated and treated with PD-1 blocking antibody CD8 + T cells co-cultured for 5 days with a Gag polypeptide group, the content of HIV-1 repository cells Happening.
图20:实施例21中,将血浆中检测不出的病毒载量(Viral Load<20copies/mL)的HIV-1感染患者意外创伤所取得CNS系统中分离的Microglia细胞和血液中resting CD8 +T细胞体外合并培养,用TRABD2A的blocking抗体和Gag多肽处理96小时后,能够释放HIV-1的Microglia细胞的的存活率。 Figure 20: Example 21, in which HIV-1 infected patients with viral load (Viral Load < 20 copies/mL) were accidentally wounded, and the Microglia cells and the resting CD8 + T in the blood were obtained from the CNS system. The cells were cultured in vitro and treated with TRABD2A blocking antibody and Gag polypeptide for 96 hours to release the survival rate of HIV-1 Microglia cells.
下面通过实施例说明本发明的各项内容。The contents of the present invention will be described below by way of examples.
实施方式Implementation
以下结合具体的实施方式,对本发明进行详细描述,目的是为了公众更好的理解所述的技术内容,而不是对所述技术内容进行限制,事实上,在以相同或近似的原理进行的改进,都在本发明所要求保护的权利要求范围之内。特别的,在实施例以及附图中:The present invention will be described in detail below with reference to specific embodiments for the purpose of better understanding of the technical contents of the public, and not limiting the technical content. In fact, improvements are made on the same or similar principles. All are within the scope of the claims as claimed. In particular, in the examples and the figures:
BD指低于检测限度(below detection limit);BD means below detection limit (below detection limit);
RLU指相关荧光单位(relative luminescence units);RLU refers to relative luminescence units;
NS指不显著(not significant);NS means not significant;
Mock指阴性对照组;Mock refers to the negative control group;
HIV Release指HIV病毒释放水平;HIV Release refers to the level of HIV virus release;
Infectivity指病毒侵染水平Infectivity refers to the level of virus infection
实施例1Example 1
HIV存储库细胞的人类TRABD2A蛋白具有抑制HIV-1病毒释放的作用,对于HIV-1有特异性的抑制性。并且参与特异性的降解Gag前体。The human TRABD2A protein of the HIV reservoir cells has an inhibitory effect on the release of HIV-1 virus and is specifically inhibited against HIV-1. And participate in the specific degradation of Gag precursors.
将Myc标记的Gag蛋白送入通过感染HIV-1病毒的CD4 +T储存库细胞中并且培养4天。通过使用抗Myc抗体和IgG对照抗体的免疫沉淀反应试验,找出在HIV-1复制后期可能与Gag蛋白相互作用的细胞蛋白。结果显示,54个蛋白与Myc标记的Gag蛋白形成沉淀(见表1),而69个蛋白与IgG抗体形成沉淀(见表2)。通过与IgG对照抗体进行比较,发现25个细胞蛋白特异性的与Gag蛋白结合。根据与相关数据材料的比对,发现只有TRABD2A蛋白在HIV感染的CD4 +T储存库细胞的表达是显著高于激活的CD4 +T细胞的,而TRABD2B蛋白在HIV感染的CD4 +T储存库细胞上或者激活的CD4 +T细胞上均没有被发现。具体试验步骤如下:将从10个健康捐赠者处获得的分离后的CD4 +T细胞,分别用Myc标记构建的Gag(4x10 6个细胞/电穿孔)在6小时后用HIV-1 NL4.3离心转染(spinoculated)。转染五天后,细胞裂解于免疫沉淀(IP)裂解缓冲剂中(50mM Tris-HCl,pH 7.2,50mM NaCl,1%NP-40,1mM EDTA,2%甘油,1×蛋白酶抑制剂)且收集所有细胞裂解产物。裂解产物在冰上培养30分钟并在12000rpm 4℃下离心 10分钟。上清液转移至试管中,离心残余物与冷的免疫沉淀(IP)裂解缓冲剂混合后声波降解,然后12000rpm 4℃下离心10分钟。收集两次上述提取步骤后获得的上清液与蛋白质A和protein G Dynabeads(来自Invitrogen)共反应,该蛋白质A和protein G Dynabeads经过与抗体在4℃下预处理。该免疫沉淀产物用冷的免疫沉淀缓冲液和PBST清洗5-10次(每次500μL)。该免疫沉淀产物首先在95℃20mM二硫苏糖醇(DTT)(来自Sigma)下降解5分钟,然后在50mM碘乙酰胺(IAA)(来自Sigma)室温下、暗室中烷基化30分钟。烷基化后,转移样品至10kD离心旋转过滤器中(来自Millipore),在14,000×g.下,用200μL的8M尿素离心清洗洗三次,200μL的50mM碳酸氢铵离心清洗两次。下一步,以1:50(酶/基质,m/m)的比例,在200μL的50mM碳酸氢铵加入胰蛋白酶(来自Promega),在37摄氏度进行胰蛋白酶消化16小时。将过滤系统换成新的收集管并在14,000×g下离心可收集多肽类。为了提高多肽类的产量,能够用100μL的50mM NaHCO 3清洗过滤系统。用STAGE TIP将获得的多肽类脱盐。MS试验都是通过纳米级UHPLC(EASY-nLC1000来自Proxeon Biosystems,Odense,Denmark)并与Orbitrap Q-Exactive连接,配有纳米电子喷雾源(来自Thermo Fisher Scientific,Bremen,Germany)的系统进行的。将多肽用5%CH 3CN溶解在0.1%FA中并在塞满2m C18磁珠(来自Thermo Fisher Scientific,Bremen,Germany)的RP-HPLC分析柱(75μm×15cm)上,以2h梯度将5%至40%的乙腈以250nL/min的流速溶解在甲酸中。喷雾的电压设置在2.5kV,离子迁移毛细管的温度为275℃。一个完整的MS/MS循环包括一个完整的MS扫描(分辨率,70,000;AGC值,le6;最大注射时间50ms)在轮廓模式(profile mode)下,质量范围从300~1800m/z,随后是裂解流程,用前十种最强离子以标准化碰撞能量为28%的质心模式(centroid mode)(分辨率,17,500;AGC值le5,最大注射时间100ms)高能量碰撞解离。动态排斥窗口设定在40秒。每个MS和MS/MS扫描都需要一个微扫描。未指定的离子或者其他电荷为1+和>7+都被MS/MS循环拒绝。质量矫正用的是背景离子(m/z 445.12003)。原始数据用Proteome Discoverer(PD,version 2.1)处理,获得的MS/MS图谱与Swiss-Prot人类蛋白质组对比检索。所有的检索都在7ppm混合物质量公差下完成。片段质量公差为20millimass unit (mmu),氧化20(Met)(+15.9949Da)和乙酰化(protein N-termini)(+42.0106Da)作为可变系数,脲甲基化(Cys)(+57.0215Da)作为不变系数,胰蛋白酶酶解片段不完全设定为2个。只允许至少有6个氨基酸长度的多肽。多肽和蛋白质鉴定用PD过滤以控制错误发现率(FDR)<1%。在蛋白质鉴定中至少要求一种独特的蛋白。 The Myc-tagged Gag protein was introduced into CD4 + T reservoir cells infected with HIV-1 virus and cultured for 4 days. Cellular proteins that may interact with Gag proteins at the late stage of HIV-1 replication were identified by immunoprecipitation experiments using anti-Myc antibodies and IgG control antibodies. The results showed that 54 proteins formed a precipitate with the Myc-labeled Gag protein (see Table 1), while 69 proteins formed a precipitate with the IgG antibody (see Table 2). By comparison with the IgG control antibody, it was found that 25 cell proteins specifically bind to the Gag protein. Based on alignment with relevant data materials, it was found that only TRABD2A protein was significantly higher in HIV-infected CD4 + T reservoir cells than in activated CD4 + T cells, whereas TRABD2B protein was in HIV-infected CD4 + T reservoir cells. None of the above or activated CD4 + T cells were found. The specific test procedure was as follows: isolated CD4 + T cells obtained from 10 healthy donors, Gag ( 4 ×10 6 cells/electroporation) constructed with Myc markers, respectively, after 6 hours with HIV-1 NL4.3 Centrifuged. Five days after transfection, the cells were lysed in immunoprecipitation (IP) lysis buffer (50 mM Tris-HCl, pH 7.2, 50 mM NaCl, 1% NP-40, 1 mM EDTA, 2% glycerol, 1× protease inhibitor) and collected. All cell lysates. The lysate was incubated on ice for 30 minutes and centrifuged at 12000 rpm at 4 °C for 10 minutes. The supernatant was transferred to a test tube, and the centrifuged residue was mixed with cold immunoprecipitated (IP) lysis buffer and sonicated, and then centrifuged at 12,000 rpm at 4 ° C for 10 minutes. The supernatant obtained after the above two extraction steps was co-reacted with Protein A and protein G Dynabeads (from Invitrogen), and the protein A and protein G Dynabeads were pretreated with the antibody at 4 °C. The immunoprecipitated product was washed 5-10 times with cold immunoprecipitation buffer and PBST (500 μL each). The immunoprecipitated product was first degraded for 5 minutes at 95 ° C in 20 mM dithiothreitol (DTT) (from Sigma) and then alkylated in 50 mM iodoacetamide (IAA) (from Sigma) for 30 minutes at room temperature in a dark room. After alkylation, the sample was transferred to a 10 kD centrifugal spin filter (from Millipore), washed three times with 200 μL of 8 M urea by centrifugation at 14,000 x g, and washed twice with 200 μL of 50 mM ammonium bicarbonate. Next, trypsin (from Promega) was added at a ratio of 1:50 (enzyme/matrix, m/m) in 200 μL of 50 mM ammonium hydrogencarbonate, and trypsinization was carried out at 37 ° C for 16 hours. The filtration system was replaced with a new collection tube and centrifuged at 14,000 x g to collect the polypeptides. In order to increase the yield of the polypeptide, the filtration system can be washed with 100 μL of 50 mM NaHCO 3 . The obtained polypeptides were desalted using STAGE TIP. MS experiments were performed by nanoscale UHPLC (EASY-nLC1000 from Proxeon Biosystems, Odense, Denmark) coupled to Orbitrap Q-Exactive, equipped with a nanoelectron spray source (from Thermo Fisher Scientific, Bremen, Germany). The polypeptide was dissolved in 0.1% FA with 5% CH 3 CN and applied to a RP-HPLC analytical column (75 μm x 15 cm) packed with 2 m C18 magnetic beads (from Thermo Fisher Scientific, Bremen, Germany) with a gradient of 2 h. % to 40% of acetonitrile was dissolved in formic acid at a flow rate of 250 nL/min. The spray voltage was set at 2.5 kV and the ion transport capillary was at 275 °C. A complete MS/MS cycle consists of a complete MS scan (resolution, 70,000; AGC value, le6; maximum injection time 50ms) in profile mode, mass range from 300 to 1800m/z, followed by cracking The process uses the top ten strongest ions to normalize the collision energy to 28% of the centroid mode (resolution, 17,500; AGC value le5, maximum injection time 100ms) high energy collision dissociation. The dynamic exclusion window is set at 40 seconds. A micro scan is required for each MS and MS/MS scan. Unspecified ions or other charges of 1+ and >7+ are rejected by the MS/MS cycle. Background correction is used for mass correction (m/z 445.12003). Raw data was processed using Proteome Discoverer (PD, version 2.1) and the obtained MS/MS spectra were compared with the Swiss-Prot human proteome. All searches were done with a mass tolerance of 7 ppm mixture. Fragment quality tolerances are 20millimass unit (mmu), oxidation 20 (Met) (+15.9949 Da) and acetylation (protein N-termini) (+42.0106 Da) as variable coefficients, urea methylation (Cys) (+57.0215 Da As a constant coefficient, the trypsin digestion fragment was not completely set to two. Only polypeptides of at least 6 amino acids in length are allowed. Polypeptide and protein identification was filtered with PD to control the false discovery rate (FDR) <1%. At least one unique protein is required for protein identification.
进一步去验证TRABD2A的作用,将HIV-1病毒载体处理具有不同TRABD2A蛋白表达水平的293T细胞,发现相较于不具有TRABD2A蛋白表达的293T细胞,这些含有TRABD2A蛋白表达的293T细胞在HIV-1侵染性(infectivity)能够下降至最多约1/4000的水平,甚至更多于完全检测不到病毒的侵染性。具体试验步骤如下:293T细胞用Myc标记的TRABD2A蛋白表达载体转染,包括阴性对照组在内使用pNL4.3处理。在转染后48小时,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平每次测量数据均已减去背景RLU(图1-1,Fig.1b)。To further verify the role of TRABD2A, HIV-1 virus vector was treated with 293T cells with different TRABD2A protein expression levels, and these 293T cells containing TRABD2A protein expression were found to be invaded by HIV-1 compared to 293T cells without TRABD2A protein expression. The infectivity can be reduced to a level of up to about 1/4000, and even more so that the infectivity of the virus is completely undetectable. The specific test procedure was as follows: 293T cells were transfected with the Myc-tagged TRABD2A protein expression vector, including pNL4.3, including the negative control group. At 48 hours post-transfection, the supernatant was used to infect TZMbl reporter cells to obtain virus infection levels. The background RLU was subtracted from each measurement (Figure 1-1, Fig. 1b).
在具有TRABD2A蛋白过量表达的情况下,培养上清液中的病毒粒子的核心抗原p24以及病毒颗粒的基因组RNA的含量也大幅度下降。具体试验步骤如下:采用与图1-1中类似的前处理步骤,进行p24酶联免疫吸附测定(ELISA)(图1-2,Fig.1c),以及基于特定的探针的qPCR测量病毒粒子有关的基因组RNA(Virion RNA)(图1-3,Fig.d)。In the case of overexpression of the TRABD2A protein, the content of the core antigen p24 of the virions in the culture supernatant and the genomic RNA of the virus particles is also greatly reduced. The specific test procedure is as follows: p24 enzyme-linked immunosorbent assay (ELISA) (Fig. 1-2, Fig. 1c), and qPCR based on specific probes were used to measure virions using a similar pretreatment step as in Figure 1-1. Related genomic RNA (Virion RNA) (Figure 1-3, Fig.d).
然而,TRABD2A蛋白过量表达并不影响细胞内病毒Gag转录水平。这说明了TRABD2A蛋白过量表达显著的降低了HIV-1的颗粒包装,但是不影响HIV-1的转录。同时,与TRABD2A蛋白正相关的病毒Gag蛋白也显著的降低,而包膜糖蛋白gp120等并不受影响,这说明了TARBD2A参与特异性的降解Gag前体。具体试验步骤如下:提取所有RNA进行qPCR以测量HIV-1的Gag转录水平(图1-4,Fig.1e)。将细胞裂解进行免疫印迹试验,并使用特异性抗体检测HIV-1 Gag、gp120、TRABD2A蛋白和磷酸甘油醛脱氢酶蛋白表达水平(图1-5,Fig.1f)。However, overexpression of TRABD2A protein did not affect intracellular viral Gag transcription levels. This demonstrates that overexpression of TRABD2A protein significantly reduces the granule packaging of HIV-1, but does not affect the transcription of HIV-1. At the same time, the viral Gag protein positively associated with the TRABD2A protein was also significantly reduced, while the envelope glycoprotein gp120 and the like were not affected, indicating that TARBD2A is involved in the specific degradation of the Gag precursor. The specific test procedure was as follows: All RNA was extracted for qPCR to measure the Gag transcription level of HIV-1 (Fig. 1-4, Fig. 1e). The cells were lysed for immunoblotting and the expression levels of HIV-1 Gag, gp120, TRABD2A protein and glyceraldehyde phosphate dehydrogenase protein were detected using specific antibodies (Fig. 1-5, Fig. 1f).
检测在293T细胞中TRABD2A蛋白的过表达对于CMV启动子驱动的HBV(hepatitis B virus)病毒的作用,以判断TRABD2A蛋白是否特异性的作用于HIV-1,结果发现了完整的HBV复制,即TRABD2A蛋白并不影响HBV的复制和释放。具体试验步骤如下:实验组的293T细胞由Myc标记的TRABD2A表达载体转染,与阴性对照组一同使用HBV复制子(CMV启动子)处理。48小时后,使用HBs酶联免疫吸附测定检验培养上清液中的HBV病毒粒子(图1-6,Fig.1g)。并将细胞裂解进行免疫印迹试验以测量TRABD2A和磷酸甘油醛脱氢酶的表达水平(图1-7,Fig.1h)。The effect of overexpression of TRABD2A protein in 293T cells on the CMV promoter-driven HBV (hepatitis B virus) virus was examined to determine whether the TRABD2A protein specifically acts on HIV-1, and a complete HBV replication, TRABD2A, was found. Protein does not affect the replication and release of HBV. The specific test procedure was as follows: The 293T cells of the experimental group were transfected with the Myc-tagged TRABD2A expression vector, and treated with the HBV replicon (CMV promoter) together with the negative control group. After 48 hours, HBV virions in the culture supernatant were examined using HBs enzyme-linked immunosorbent assay (Figures 1-6, Fig. 1g). The cells were lysed for immunoblotting to measure the expression levels of TRABD2A and glyceraldehyde phosphate dehydrogenase (Figures 1-7, Fig. 1h).
表1与Myc标记的Gag蛋白形成沉淀的54个蛋白Table 1 shows the precipitation of 54 proteins with Myc-tagged Gag protein
序号Serial number 蛋白质编号Protein number 序号Serial number 蛋白质编号Protein number 序号Serial number 蛋白质编号Protein number
1.1. P35908 P35908 2.2. P81605-2P81605-2 3.3. P35030 P35030
4.4. H6VRG1 H6VRG1 5.5. P26447 P26447 6.6. P60174 P60174
7.7. L0R599 L0R599 8.8. Q86YZ3 Q86YZ3 9.9. B7Z6Z4 B7Z6Z4
10.10. Q86V40 Q86V40 11.11. A8MU27 A8MU27 12.12. B3KMQ6 B3KMQ6
13.13. P35527 P35527 14.14. P02533 P02533 15.15. P31947 P31947
16.16. P13645 P13645 17.17. P62851 P62851 18.18. P04083 P04083
19.19. Q53HU8 Q53HU8 20.20. Q65ZC9Q65ZC9 21.twenty one. Q6MZX7Q6MZX7
22.twenty two. A0N7I9A0N7I9 23.twenty three. B4DPP6B4DPP6 24.twenty four. A0A024R1N1A0A024R1N1
25.25. D1MGQ2D1MGQ2 26.26. P28799P28799 27.27. P07355-2P07355-2
28.28. P13647P13647 29.29. B4DR52 B4DR52 30.30. O43290O43290
31.31. Q0ZCJ1Q0ZCJ1 32.32. B7Z8Q2B7Z8Q2 33.33. Q05639Q05639
34.34. P19474P19474 35.35. P62269P62269 36.36. Q5D862Q5D862
37.37. Q6GMV7Q6GMV7 38.38. E7EX29E7EX29 39.39. Q9BUH8 Q9BUH8
40.40. P62805P62805 41.41. Q6N092Q6N092 42.42. P06733P06733
43.43. P62979P62979 44.44. A8K486A8K486 45.45. P14625P14625
46.46. H7C2N1H7C2N1 47.47. Q8TCD0Q8TCD0 48.48. M1VPF4M1VPF4
49.49. A0A0A0MS14 A0A0A0MS14 50.50. P20700P20700 51.51. I0B0K7I0B0K7
52.52. A0A075B7D0A0A075B7D0 53.53. Q59G88Q59G88 54.54. V9HWB4V9HWB4
表2与IgG抗体形成沉淀的69个蛋白Table 2: 69 proteins that precipitate with IgG antibodies
序号Serial number 蛋白质编号Protein number 序号Serial number 蛋白质编号Protein number 序号Serial number 蛋白质编号Protein number
1.1. H6VRG1 H6VRG1 2.2. J3QRS3 J3QRS3 3.3. P06703 P06703
4.4. P35908 P35908 5.5. Q6MZW0 Q6MZW0 6.6. Q59G88 Q59G88
7.7. P13645 P13645 8.8. P28799 P28799 9.9. P62269 P62269
10.10. P35527 P35527 11.11. Q6N092 Q6N092 12.12. J3KSD8 J3KSD8
13.13. Q53HU8 Q53HU8 14.14. Q5D862 Q5D862 15.15. P06313 P06313
16.16. P02533 P02533 17.17. P16402 P16402 18.18. P84098 P84098
19.19. P13647 P13647 20.20. P81605-2P81605-2 21.twenty one. Q59EJ3Q59EJ3
22.twenty two. P08779P08779 23.twenty three. B4DR52B4DR52 24.twenty four. Q8NF17Q8NF17
25.25. A0A024R1N1A0A024R1N1 26.26. H7C2N1H7C2N1 27.27. P62263P62263
28.28. B2R853B2R853 29.29. D1MGQ2 D1MGQ2 30.30. B2R7F8B2R7F8
31.31. D3DTX7D3DTX7 32.32. A0A5E4A0A5E4 33.33. Q5T749Q5T749
34.34. B4DPP6B4DPP6 35.35. Q05639Q05639 36.36. Q86YZ3Q86YZ3
37.37. P63261P63261 38.38. P08123P08123 39.39. P23435 P23435
40.40. P02452P02452 41.41. A0A0A0MT36A0A0A0MT36 42.42. Q05D60Q05D60
43.43. A2NJV5A2NJV5 44.44. A9UFC0A9UFC0 45.45. P0C0L4P0C0L4
46.46. B7Z8Q2B7Z8Q2 47.47. A0A0A0MS14A0A0A0MS14 48.48. Q03001Q03001
49.49. P62805 P62805 50.50. P07355-2P07355-2 51.51. P06748P06748
52.52. P19474P19474 53.53. P02461P02461 54.54. D3DQ70D3DQ70
55.55. P35030P35030 56.56. A0A075B7D0A0A075B7D0 57.57. P62280P62280
58.58. P01613P01613 59.59. Q5CZ94 Q5CZ94 60.60. P00338-3P00338-3
61.61. A0A096LP77A0A096LP77 62.62. A0A087X130A0A087X130 63.63. M1VPF4M1VPF4
64.64. B7Z6Z4B7Z6Z4 65.65. P07737P07737 66.66. A0A087WYA1A0A087WYA1
67.67. Q14094Q14094 68.68. Q59GY2Q59GY2 69.69. A0A096LNH6A0A096LNH6
实施例2Example 2
人类TRABD2A蛋白家族中的TRABD2A-201和202以及TRABD2B蛋白具有抑制HIV-1病毒释放的作用,对于HIV-1有特异性的抑制性。同时,黑猩猩的TRABD2A蛋白也具有抑制HIV-1病毒释放的作用,对于HIV-1有特异性的抑制性。The TRABD2A-201 and 202 and TRABD2B proteins in the human TRABD2A protein family have an inhibitory effect on HIV-1 virus release and are specifically inhibited against HIV-1. At the same time, chimpanzee's TRABD2A protein also has the effect of inhibiting the release of HIV-1 virus, and has specific inhibition to HIV-1.
人类TRABD2A蛋白具体有三种,TARBD2A-201蛋白、TRABD2A-202蛋白以及TRABD2A-203蛋白。人类TRABD2B蛋白仅有一种。检测所有三种人类TRABD2A蛋白、人类TRABD2B蛋白和黑猩猩TRABD2A蛋白(201)的抗HIV-1活性。相对于阴性对照组,人类TRABD2A-201蛋白和人类TRABD2B蛋白分别将了HIV-1的侵染性降低至阴性对照组的1/1087和1/186。而人类TRABD2A-203蛋白没有显示出抗HIV-1活性。人类TRABD2A-202蛋白和黑猩猩TRABD2A蛋白也能够降低HIV-1的侵染性,只不过降低幅度与人类TRABD2A-201相比稍稍不同。这说明灵长类的TraB家族细胞膜金属蛋白酶都可能具有抗HIV-1活性。具体试验步骤如下:293T细胞用GFP标记的人类TRABD2A-201,FLAG标记的人类TRABD2A-202和TRABD2A-203,MYC-FLAG标记的人类TRABD2B,FLAG标记的黑猩猩TRABD2A蛋白转染,包括阴性对照组在内均用pNL4.3处理。在转染后48小时,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平每次测量数据均已减去背景RLU(图2-1,Extended Data Fig.5b)。用特异性抗体在免疫印迹试验下检测外源TRABD蛋白和磷酸甘油醛脱氢酶(图2-2,Extended Data Fig.5c)There are three specific human TRABD2A proteins, TARBD2A-201 protein, TRABD2A-202 protein and TRABD2A-203 protein. There is only one human TRABD2B protein. The anti-HIV-1 activity of all three human TRABD2A proteins, human TRABD2B protein and chimpanzee TRABD2A protein (201) was examined. The human TRABD2A-201 protein and the human TRABD2B protein reduced the infectivity of HIV-1 to 1/1087 and 1/186 of the negative control group, respectively, relative to the negative control group. The human TRABD2A-203 protein showed no anti-HIV-1 activity. Human TRABD2A-202 protein and chimpanzee TRABD2A protein also reduced HIV-1 invasiveness, except that the magnitude of the decrease was slightly different from that of human TRABD2A-201. This suggests that the primate TraB family cell membrane metalloproteinases may have anti-HIV-1 activity. The specific test procedures are as follows: 293T cells were transfected with GFP-tagged human TRABD2A-201, FLAG-tagged human TRABD2A-202 and TRABD2A-203, MYC-FLAG-labeled human TRABD2B, FLAG-labeled chimpanzee TRABD2A protein, including the negative control group. Both were treated with pNL4.3. At 48 hours post-transfection, the supernatant was used to infect TZMbl reporter cells to obtain virus infection levels. The background RLU was subtracted from each measurement (Figure 2-1, Extended Data Fig. 5b). Detection of exogenous TRABD protein and glyceraldehyde phosphate dehydrogenase by immunoblotting with specific antibodies (Fig. 2-2, Extended Data Fig. 5c)
实施例3Example 3
TRABD2A蛋白与TRABD2B蛋白对于HIV-1具有抑制性,该抑制性体现在特异降解病毒核心分子Gag蛋白,而影响Gag的转录。The TRABD2A protein and the TRABD2B protein are inhibitory to HIV-1, which is manifested in the specific degradation of the viral core molecule Gag protein, which affects the transcription of Gag.
人类TRABD2A和2B蛋白都表现出了非常强的阻止HIV-1侵染的能力,并且不会影响Gag转录。具体试验步骤如下:用GFP标记的TRABD2A表达载体、Myc标记的TRABD2B表达载体转染293T细胞,包括阴性对照组 在内用pNL4.3ΔE-GFP以及分别表达VSV-G、HIV-1 NL4.3或者-89.6的载体处理。在48小时转染后,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平,每次测量数据均已减去背景RLU(图3-1,Fig.2a)。提取的所有RNA都进行qPCR以量化的Gag转录物,以磷酸甘油醛脱氢酶进行归一化(图3-2,Fig.2b)。 Both human TRABD2A and 2B proteins exhibit a very strong ability to block HIV-1 infection and do not affect Gag transcription. The specific test procedure was as follows: 293T cells were transfected with GFP-tagged TRABD2A expression vector and Myc-labeled TRABD2B expression vector, including pNL4.3ΔE-GFP and negative expression of VSV-G, HIV-1 NL4.3, or the negative control group, respectively. Carrier treatment of -89.6. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain virus infection levels, and background RLU was subtracted from each measurement (Figure 3-1, Fig. 2a). All RNAs extracted were subjected to qPCR to quantify the Gag transcript and normalized to glyceraldehyde phosphate dehydrogenase (Figure 3-2, Fig. 2b).
人类TRABD2A和2B的表达也展现出了对于HIV-1 BH10和HIV-1 BaL侵染的限制能力。具体试验步骤如下:用GFP标记的TRABD2A、Myc标记的TRABD2B转染293T细胞,包括阴性对照组在内均用病毒载体BH10(图3-3,Fig.2c)、BaL(图3-4,Fig.2d)处理。在转染48小时后,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平,每次测量数据均已减去背景RLU。 Expression of human TRABD2A and 2B also demonstrated a limiting capacity for HIV-1 BH10 and HIV-1 BaL infection. The specific test procedure was as follows: 293T cells were transfected with GFP-tagged TRABD2A and Myc-labeled TRABD2B, including the viral vector BH10 (Fig. 3-3, Fig. 2c), BaL (Fig. 3-4, Fig. .2d) Processing. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the level of infection of the virus, and the background RLU was subtracted from each measurement.
人类TRABD2B蛋白也显示出,在不影响Gag转录的同时,阻止HIV-1侵染并且增强病毒Gag蛋白降解的功能。具体试验步骤如下:293T细胞用Myc标记的TRABD2B表达载体转染,包括阴性对照组在内均用pNL4.3处理。在转染后48小时,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平,每次测量数据均已减去背景RLU(图3-5,Extended Data Fig.2a)。提取所有RNA出来做qPCR以量化病毒Gag转录物,使用磷酸甘油醛脱氢酶进行归一化(图3-6,Extended Data Fig.2b)。用免疫印迹试验检测TRABD2B,Gag和磷酸甘油醛脱氢酶蛋白含量(图3-7,Extended Data Fig.2c)。The human TRABD2B protein also showed a function of preventing HIV-1 infection and enhancing viral Gag protein degradation without affecting Gag transcription. The specific test procedure was as follows: 293T cells were transfected with Myc-tagged TRABD2B expression vector, including pNL4.3, including the negative control group. At 48 hours post-transfection, the supernatant was used to infect TZMbl reporter cells to obtain virus infection levels, and the background RLU was subtracted from each measurement (Figure 3-5, Extended Data Fig. 2a). All RNA was extracted for qPCR to quantify viral Gag transcripts and normalized using glyceraldehyde phosphate dehydrogenase (Figure 3-6, Extended Data Fig. 2b). The content of TRABD2B, Gag and glyceraldehyde phosphate dehydrogenase protein was determined by immunoblotting assay (Fig. 3-7, Extended Data Fig. 2c).
实施例4Example 4
人类TRABD2A蛋白以及TRABD2B蛋白具有抑制其他慢病毒的作用,尤其是具有抑制HIV-2病毒释放的作用,对于HIV-2有特异性的抑制性。The human TRABD2A protein and the TRABD2B protein have the effect of inhibiting other lentiviruses, in particular, inhibiting the release of HIV-2 virus, and have specific inhibition against HIV-2.
人类TRABD2A和2B的过量表达对于SIV mac239、HIV-2 ST、HIV-1 89.6、CCR5HIV-1 AD8等都具有限制侵染的能力。这说明了TRABD细胞膜金属蛋 白家族广泛的抗慢病毒(lentiviruses)能力。具体试验步骤如下:用GFP标记的TRABD2A、Myc标记的TRABD2B转染293T细胞,包括阴性对照组在内均用病毒载体CCR5HIV-1 AD8、HIV-1 89.6、SIV mac239(图4-1,Fig.2e)或HIV-2 ST(图4-2,Fig.2f)处理。在转染48小时后,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平,每次测量数据均已减去背景RLU。 Overexpression of human TRABD2A and 2B has the ability to limit infection for SIV mac239 , HIV-2 ST , HIV-1 89.6 , CCR5 HIV-1 AD8 , and the like. This illustrates the broad anti-lentiviruses ability of the TRABD cell membrane metalloprotein family. The specific test procedures were as follows: 293T cells were transfected with GFP-tagged TRABD2A and Myc-labeled TRABD2B, including the viral vectors CCR5HIV-1 AD8 , HIV-1 89.6 , and SIV mac239 (Fig. 4-1, Fig.). 2e) or HIV-2 ST (Fig. 4-2, Fig. 2f) treatment. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the level of infection of the virus, and the background RLU was subtracted from each measurement.
实施例5Example 5
TRABD需要Mn 2+以实现其对于HIV-1的抑制作用。二价金属螯合剂、Ni 2+、Co 2+和Zn 2+能够抑制TRABD对于HIV-1的抑制作用。 TRABD requires Mn 2+ to achieve its inhibition of HIV-1. Divalent metal chelators, Ni 2+ , Co 2+ and Zn 2+ can inhibit the inhibition of HIV-1 by TRABD.
人类TRABD2A和TRABD2B是膜细胞金属蛋白酶。使用1,10-邻二氮杂菲或者其他二价金属螯合剂处理,虽然TRABD2A和2B的表达水平没有变化,但是其抗病毒能力完全消失。使用Co 2+、Ni 2+、Mn 2+和Zn 2+分别处理并观察结果。Co 2+、Ni 2+能够抑制人类TRABD2A的抗HIV-1病毒能力,而Mn 2+则增强人类TRABD2A 的抗HIV-1病毒能力。当Zn 2+处于较高浓度时候,其表现出了一定的对于TRABD2A的抗HIV-1病毒能力的抑制作用。具体试验步骤如下:用GFP标记的TRABD2A表达载体,Myc标记的TRABD2B表达载体感染293T细胞,包括阴性对照组在内均用pNL4.3进行处理。转染6小时后,使用各种浓度的下列溶液清洗处理细胞:1,10-邻二氮杂菲、Co 2+、Ni 2+、Mn 2+和Zn 2+。在42小时转染后,将细胞裂解,用特异性抗体做免疫印迹试验检测TRABD2A和磷酸甘油醛脱氢酶蛋白表达水平,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平,进而得出各个离子对于TRABD蛋白抑制HIV-1感染的作用的影响。结果如下:1,10-邻二氮杂菲(图5-1,Fig.3a),Co 2+(图5-2,Fig.3b),Ni 2+(图5-3,Fig.3c),Mn 2+(图5-4,Fig.3d)和Zn 2+(图5-5,Fig.3g)。 Human TRABD2A and TRABD2B are membrane cell metalloproteinases. Treatment with 1,10-phenanthroline or other divalent metal chelators, although the expression levels of TRABD2A and 2B did not change, but their antiviral ability completely disappeared. The results were treated with Co 2+ , Ni 2+ , Mn 2+ and Zn 2+ , respectively. Co 2+ and Ni 2+ can inhibit the anti-HIV-1 virus ability of human TRABD2A, while Mn 2+ enhances the anti-HIV-1 virus ability of human TRABD2A. When Zn 2+ is at a higher concentration, it exhibits a certain inhibitory effect on the anti-HIV-1 virus ability of TRABD2A. The specific test procedure was as follows: 293T cells were infected with GFP-tagged TRABD2A expression vector and Myc-labeled TRABD2B expression vector, including pNL4.3, including the negative control group. Six hours after transfection, the cells were washed with various concentrations of the following solutions: 1,10-phenanthroline, Co 2+ , Ni 2+ , Mn 2+ , and Zn 2+ . After 42 hours of transfection, the cells were lysed and the expression levels of TRABD2A and glyceraldehyde phosphate dehydrogenase protein were detected by immunoblotting with specific antibodies. The supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus. The effect of each ion on the inhibition of HIV-1 infection by TRABD protein was obtained. The results are as follows: 1,10-phenanthroline (Fig. 5-1, Fig. 3a), Co 2+ (Fig. 5-2, Fig. 3b), Ni 2+ (Fig. 5-3, Fig. 3c) , Mn 2+ (Fig. 5-4, Fig. 3d) and Zn 2+ (Fig. 5-5, Fig. 3g).
对于TRABD2B的抗HIV-1病毒能力的影响,这些金属离子也展现其对于TRABD2A类似的作用。具体试验步骤如下:293T细胞用Myc标记的TRABD2B表达载体转染,包括阴性对照组在内均用pNL4.3进行处理。转 染6小时后,使用各种浓度的下列溶液清洗处理细胞:Co 2+、Ni 2+、Mn 2+、和Zn 2+。在42小时转染后,将细胞裂解,用特异性抗体做免疫印迹试验检测TRABD2B和磷酸甘油醛脱氢酶蛋白表达水平,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平,进而得出各个离子对于TRABD蛋白抑制HIV-1感染的作用的影响。对TRABD2B和对照组分别检测。结果如下:Co 2+(图5-6,Extended Data Fig.6a),Ni 2+(图5-7,Extended Data Fig.6b),Mn 2+(图5-8,Extended Data Fig.6c)和Zn 2+(图5-9,Extended Data Fig.6f)。 These metal ions also exhibit a similar effect on TRABD2A for the effect of TRABD2B against HIV-1 virus capacity. The specific test procedure was as follows: 293T cells were transfected with Myc-tagged TRABD2B expression vector, including pNL4.3, including the negative control group. Six hours after transfection, the cells were washed with various concentrations of the following solutions: Co 2+ , Ni 2+ , Mn 2+ , and Zn 2+ . After 42 hours of transfection, the cells were lysed and the expression levels of TRABD2B and glyceraldehyde phosphate dehydrogenase protein were detected by immunoblotting with specific antibodies. The supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus. The effect of each ion on the inhibition of HIV-1 infection by TRABD protein was obtained. Detected separately for TRABD2B and control group. The results are as follows: Co 2+ (Fig. 5-6, Extended Data Fig. 6a), Ni 2+ (Fig. 5-7, Extended Data Fig. 6b), Mn 2+ (Fig. 5-8, Extended Data Fig. 6c) And Zn 2+ (Fig. 5-9, Extended Data Fig. 6f).
实施例6Example 6
采用金属离子、金属螯合剂以及相关的单克隆抗体等抑制人类TRABD2A蛋白活性,能够促发感染病毒的储存库细胞释放体外感染HIV-1型以及HIV-2型病毒,并被检测到。Inhibition of human TRABD2A protein activity by metal ions, metal chelators and related monoclonal antibodies can promote the infection of virus-infected reservoir cells to release HIV-1 and HIV-2 viruses in vitro and be detected.
通过使用Ni 2+,Co 2+,二价金属螯合剂,以及TRABD2A蛋白的特异性单克隆抗体,能够促发HIV感染的储存库细胞释放HIV-1,HIV-2型病毒。具体试验步骤如下:将HIV-1和HIV-2型病毒用超离心法感染静息CD4+T细胞。侵染完成6小时后,多余病毒用培养基洗去,再分别加入100μM的Ni 2+、Co 2+、5μM的1,10-邻二氮杂菲、或100ng的TRABD2A蛋白的特异性单克隆抗体(Antibody),培养48小时后,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平,如图6所示。 By using Ni 2+ , Co 2+ , a divalent metal chelating agent, and a monoclonal antibody specific for the TRABD2A protein, HIV-1, HIV-2 type virus can be released from a reservoir cell that promotes HIV infection. The specific test procedure is as follows: HIV-1 and HIV-2 viruses are infected with resting CD4+ T cells by ultracentrifugation. Six hours after the infection was completed, the excess virus was washed away with the medium, and then 100 μM of Ni 2+ , Co 2+ , 5 μM of 1,10-phenanthroline, or 100 ng of the specific monoclonal antibody of TRABD2A were added. Antibody (Antibody), after 48 hours of culture, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus, as shown in FIG.
实施例7Example 7
采用金属离子、金属螯合剂以及相关的单克隆抗体等抑制人类TRABD2A蛋白活性,能够促发HIV-1病人的储存库细胞释放HIV-1病毒,进而可精确检测出病人体内储存库细胞的量。The inhibition of human TRABD2A protein activity by metal ions, metal chelators and related monoclonal antibodies can promote the release of HIV-1 virus in the reservoir cells of HIV-1 patients, thereby accurately detecting the amount of cells in the patient's body.
从8个血浆内检测不到病毒RNA载量的病人的,分离外周血的单核细胞(PBMC),并纯化CD4 +T储存库细胞。将得到的CD4 +T储存库细胞分 别用100μM的Ni 2+,Co 2+、5μM的1,10-邻二氮杂菲、或100ng的TRABD2A蛋白的单克隆抗体(Antibody)进行处理。培养24小时后,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平,如图7所示。 From patients with no detectable viral RNA load in 8 plasmas, peripheral blood mononuclear cells (PBMC) were isolated and CD4 + T reservoir cells were purified. The obtained CD4 + T reservoir cells were treated with 100 μM Ni 2+ , Co 2+ , 5 μM 1,10-phenanthroline, or 100 ng of a monoclonal antibody (Antibody) of TRABD2A protein, respectively. After 24 hours of culture, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus as shown in FIG.
实施例8Example 8
采用Ni 2+离子处理从病人体内获得的储存库细胞,会在不激活储存库细胞的情况下促进HIV-1病毒的释放,并被检测到。 The use of Ni 2+ ions to treat the reservoir cells obtained from the patient will promote the release of HIV-1 virus without activating the reservoir cells and will be detected.
从接受cART治疗超过两年的病人体内分离获得了HIV-1潜伏感染的储存库细胞,以进一步分析人体中TRABD2A蛋白的抗HIV-1生理作用。HIV-1 latent infection reservoir cells were isolated from patients receiving cART treatment for more than two years to further analyze the anti-HIV-1 physiological effects of TRABD2A protein in humans.
Figure PCTCN2019074773-appb-000001
Figure PCTCN2019074773-appb-000001
除了1号病人外,其他病人血浆中的病毒RNA含量均远低于20cp/ml。使用TZMbl报告细胞对于激活和不激活的储存库细胞在Ni 2+存在或不存在的情况下进行检测。结果显示除了3号病人之外,HIV-1的释放和Ni 2+的处理含量相关,并且在没有Ni 2+的情况下,HIV-1并不会释放。相反的,在使用CD3/CD28加IL2激活之后,被激活的CD4 +T细胞释放出大量的HIV-1病毒。同时,被激活的CD4 +T细胞上的TRABD2A表达也大大的下降。Ni 2+并不会激活CD4 +T储存库细胞,暗示Ni 2+处理后的HIV-1释放并不是由于CD4 +T储存库细胞被激活而产生的。具体试验步骤如下:将分离的CD4 +T细胞等分,使用各种浓度的Ni 2+在有(或没有)CD3/CD28启动子和IL2 激活下进行处理。处理24小时后,培养基用于感染TZMbl报告细胞,以得到病毒的释放水平,每次测量数据均已减去背景RLU(图8-1,Extended Data Fig.21b)。将CD4 +T细胞中的所有RNA提取出来,用qPCR测量TRABD2A的转录物,用磷酸甘油醛脱氢酶归一化(图8-2,Extended Data Fig.21c)。用流式细胞仪检测CD4 +T表面标记CD69表达水平(图8-3,Extended Data Fig.21d)。 In addition to patient No. 1, the viral RNA content in other patients' plasma was much lower than 20 cp/ml. TZMbl reporter cells were used to detect activated and inactivated depot cells in the presence or absence of Ni 2+ . The results showed that the release of HIV-1 was associated with the treatment of Ni 2+ except for Patient No. 3, and HIV-1 was not released in the absence of Ni 2+ . In contrast, activated CD4 + T cells released a large amount of HIV-1 virus after activation with CD3/CD28 plus IL2. At the same time, the expression of TRABD2A on activated CD4 + T cells was also greatly reduced. Ni 2+ does not activate CD4 + T reservoir cells, suggesting that HIV-1 release after Ni 2+ treatment is not due to activation of CD4 + T reservoir cells. The specific test procedure was as follows: The isolated CD4 + T cells were aliquoted and treated with various concentrations of Ni 2+ with or without activation of the CD3/CD28 promoter and IL2. After 24 hours of treatment, the medium was used to infect TZMbl reporter cells to obtain the release level of the virus, and the background RLU was subtracted from each measurement data (Fig. 8-1, Extended Data Fig. 21b). All RNA in CD4 + T cells was extracted and the transcript of TRABD2A was measured by qPCR and normalized with glyceraldehyde phosphate dehydrogenase (Fig. 8-2, Extended Data Fig. 21c). The CD4 + T surface marker CD69 expression level was measured by flow cytometry (Fig. 8-3, Extended Data Fig. 21d).
从接受cART治疗超过两年并且其血浆中的病毒RNA含量均远低于20cp/mL的16位病人体内分离获得了HIV-1潜伏感染的储存库细胞,继续进行验证试验。分别在使用Ni 2+处理和不使用Ni 2+处理后24小时开始观察,发现使用Ni 2+处理后,所有病人的储存库细胞均释放了HIV-1病毒,并且储存库细胞没有被激活;同时没有使用Ni 2+处理的储存库细胞则没有检测到释放任何HIV-1病毒。具体试验步骤如下:将潜伏感染HIV-1的储存库细胞从16个cART治疗的病人(所有人的血浆病毒载量<20copies/mL)中提取出来,在不激活细胞的条件下,用各类浓度Ni 2+的溶液在处理24小时。培养基用于感染TZMbl报告细胞,以得到病毒的释放水平,每次测量数据均已减去背景RLU(图8-4,Extended Data Fig.21e)。 HIV-1 latent-infected depot cells were isolated from 16 patients who underwent cART treatment for more than two years and whose viral RNA content in the plasma was well below 20 cp/mL, and the validation test was continued. Observations were started 24 hours after treatment with Ni 2+ and without Ni 2+ , respectively. It was found that after treatment with Ni 2+ , all patients' reservoir cells released HIV-1 virus, and the reservoir cells were not activated; At the same time, the reservoir cells that were not treated with Ni 2+ were not detected to release any HIV-1 virus. The specific test procedure is as follows: The latent HIV-1-infected reservoir cells were extracted from 16 cART-treated patients (all patients with plasma viral load <20 copies/mL), and all types of cells were used without activation of cells. The solution of concentration Ni 2+ was treated for 24 hours. The medium was used to infect TZMbl reporter cells to obtain the release level of the virus, and the background RLU was subtracted from each measurement data (Fig. 8-4, Extended Data Fig. 21e).
实施例9Example 9
采用金属离子、金属螯合剂以及相关的单克隆抗体等抑制人类TRABD2A蛋白活性,在不激活HIV感染的储存库细胞的情况下,能够使得HIV感染的储存库细胞,包括病人体内获得的储存库细胞,释放HIV-1型病毒并被检测到。The use of metal ions, metal chelators, and related monoclonal antibodies to inhibit human TRABD2A protein activity, enabling HIV-infected reservoir cells, including reservoir cells obtained in patients, without activating HIV-infected reservoir cells , released HIV-1 virus and detected.
比较从健康捐献者体内获得的CD4 +T细胞和激活的CD4 +T细胞上的TRABD2A表达水平,以进一步分析TRABD2A在CD4 +T细胞中的抗HIV-1活性。在CD4 +T细胞被激活72小时之后,TRABD2A转录水平降低至小于原来的百分之一左右的水平。这暗示了TRABD2A参与的限制HIV-1释放的作用可能仅仅在储存库细胞中发生,而不会在激活的CD4 +T细胞中发生。 具体试验步骤如下:从两个无关联的健康捐赠者体内分离CD4 +T细胞,激活(Activated)/或静息(Resting)的条件下,培养12小时、24小时、48小时或72小时。将所有RNA提取出来做qPCR以检测TRABD2A转录含量,以磷酸甘油醛脱氢酶归一化,数据相对于正常人不能称为储存库?细胞作对比(设为100%)(图9-1,Fig.5a)。 CD4 + T cells and activated CD4 + TRABD2A expression levels on T cells obtained from a healthy donor Comparative in vivo, for further analysis TRABD2A activity against HIV-1 in CD4 + T cells. After 72 hours of activation of CD4 + T cells, the TRABD2A transcription level was reduced to a level less than about one percent. This suggests that the effect of TRABD2A involved in limiting HIV-1 release may occur only in depot cells and not in activated CD4 + T cells. The specific test procedure is as follows: CD4 + T cells are isolated from two unrelated healthy donors, and cultured for 12 hours, 24 hours, 48 hours, or 72 hours under the conditions of Activation/Resting. All RNA was extracted for qPCR to detect the transcriptional content of TRABD2A, normalized to glyceraldehyde phosphate dehydrogenase. The data could not be called a repository relative to normal people. Cells were compared (set to 100%) (Figure 9-1, Fig. 5a).
进一步验证,使用Ni 2+来消除TRABD2A的金属蛋白酶活性。HIV感染的CD4 +T储存库细胞在Ni 2+存在的情况下释放了大量的HIV-1细胞并且与Ni 2+的浓度和处理时间都正相关。与此同时,Ni 2+并不会影响HIV感染的CD4 +T储存库细胞中载体驱动荧光素酶指示剂(monitor vector-driven luciferase)、TRABD2A蛋白或者病毒Gag转录的水平。然而,HIV感染的CD4 +T储存库细胞在没有Ni 2+的情况下,并不会释放认可任何能够被检测到的HIV-1病毒,这也与TRABD2A的病毒限制作用相符合。具体试验步骤如下:用荧光素酶表达载体通过电穿孔注入HIV感染的CD4 +T储存库细胞并采用HIV-1 NL4.3离心转染。在转染6小时后,清洗两次以去除其中的病毒,然后在转染24小时后,不用浓度的Ni 2+处理。在处理后一天或者两天,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)(图9-2,Fig.5b)。裂解HIV感染的CD4 +T储存库细胞,以量化荧光素酶的活性,提取所有RNA进行qPCR以测量TRABD2A RNA和Gag RNA水平,以磷酸甘油醛脱氢酶进行归一化(图9-3,Fig.5c-e)。 It was further verified that Ni 2+ was used to eliminate the metalloproteinase activity of TRABD2A. HIV infection of CD4 + T cells to release a large repository of HIV-1 cells in the presence of Ni 2+ and Ni 2+ are positively correlated with the concentration and treatment time. At the same time, Ni 2+ does not affect the level of vector-driven luciferase, TRABD2A protein or viral Gag transcription in HIV-infected CD4 + T reservoir cells. However, HIV-infected CD4 + T reservoir cells do not release any HIV-1 virus that is recognized in the absence of Ni 2+ , which is consistent with the viral restriction of TRABD2A. The specific test procedure was as follows: HIV-infected CD4 + T reservoir cells were injected by electroporation with a luciferase expression vector and transfected with HIV-1 NL4.3 . After 6 hours of transfection, the virus was washed twice to remove the virus, and then treated with no concentration of Ni 2+ after 24 hours of transfection. One or two days after treatment, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (background RLU was subtracted from each measurement) (Fig. 9-2, Fig. 5b). HIV-infected CD4 + T reservoir cells were lysed to quantify luciferase activity, and all RNA was extracted for qPCR to measure TRABD2A RNA and Gag RNA levels, normalized to glyceraldehyde phosphate dehydrogenase (Figure 9-3, Fig. 5c-e).
与Ni 2+类似,Co 2+也能够限制TRABD2A活性而增强HIV感染的CD4 +T储存库细胞释放病毒的能力。与此同时,除了在200μM这一最高浓度下,Co 2+也并不影响TRABD2A和病毒Gag的转录水平。具体试验步骤如下:用荧光素酶表达载体通过电穿孔注入HIV感染的CD4 +T储存库细胞并采用HIV-1 NL4.3离心转染。在转染6小时后,清洗两次以去除其中的病毒,并在感染24小时后,用各类浓度的Co 2+处理。在处理后一天或者两天,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)。裂解HIV感染的CD4 +T储存库细胞以量化荧光素酶活性,并提取所有RNA进行qPCR以测量TRABD2A RNA和病毒Gag RNA,以磷酸 甘油醛脱氢酶进行归一化。(图9-4,Extended Data Fig.15a–d) Similar to Ni 2+ , Co 2+ can also limit TRABD2A activity and enhance the ability of HIV-infected CD4 + T reservoir cells to release virus. At the same time, in addition to the highest concentration of 200 μM, Co 2+ did not affect the transcription levels of TRABD2A and viral Gag. The specific test procedure was as follows: HIV-infected CD4 + T reservoir cells were injected by electroporation with a luciferase expression vector and transfected with HIV-1 NL4.3 . After 6 hours of transfection, the virus was washed twice to remove the virus and treated with various concentrations of Co 2+ after 24 hours of infection. One or two days after the treatment, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (the background RLU was subtracted from each measurement data). HIV-infected CD4 + T reservoir cells were lysed to quantify luciferase activity, and all RNA was extracted for qPCR to measure TRABD2A RNA and viral Gag RNA, normalized with glyceraldehyde phosphate dehydrogenase. (Figure 9-4, Extended Data Fig. 15a–d)
在使用1,10-邻二氮杂菲处理时,也有与上述Co 2+类似的结果。具体试验步骤如下:用荧光素酶表达载体通过电穿孔注入HIV感染的CD4 +T储存库细胞并采用HIV-1 NL4.3离心转染。在转染6小时后,清洗两次以去除其中的病毒,并在感染24小时后,用各类浓度的1,10-邻二氮杂菲处理。在处理后一天或者两天,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)。裂解HIV感染的CD4 +T储存库细胞以量化荧光素酶活性,并提取所有RNA进行qPCR以测量TRABD2A RNA和病毒Gag RNA,以磷酸甘油醛脱氢酶进行归一化。(图9-5,Extended Data Fig.15e–h) When treated with 1,10-phenanthroline, there are similar results as the above Co 2+ . The specific test procedure was as follows: HIV-infected CD4 + T reservoir cells were injected by electroporation with a luciferase expression vector and transfected with HIV-1 NL4.3 . After 6 hours of transfection, the virus was washed twice to remove the virus and treated with various concentrations of 1,10-phenanthroline after 24 hours of infection. One or two days after the treatment, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (the background RLU was subtracted from each measurement data). HIV-infected CD4 + T reservoir cells were lysed to quantify luciferase activity, and all RNA was extracted for qPCR to measure TRABD2A RNA and viral Gag RNA, normalized with glyceraldehyde phosphate dehydrogenase. (Figure 9-5, Extended Data Fig. 15e–h)
检测表面CD69标记的水平,以排除病毒是由于被激活而释放的可能性。没有发现细胞并没有被1,10-邻二氮杂菲、Ni 2+或者Co 2+激活。具体试验步骤如下:用未染色(unstained)的HIV感染的CD4 +T储存库细胞和激活的CD4 +T细胞作对照组。将本实施例9的图9-2中所处理的HIV感染的CD4 +T储存库细胞和本实施例9中图9-4中所处理的HIV感染的CD4 +T储存库细胞均分别用1,10-邻二氮杂菲,Co 2+,或Ni 2+处理,然后用流式细胞仪检测表面标记CD69表达水平。(图9-6,Extended Data Fig.16a–e) The level of surface CD69 labeling is detected to rule out the possibility that the virus is released due to activation. No cells were found to be activated by 1,10-phenanthroline, Ni 2+ or Co 2+ . The specific test procedure was as follows: unstained HIV-infected CD4 + T reservoir cells and activated CD4 + T cells were used as a control group. In the present embodiment of HIV FIG Example 9 9-2 treated infected CD4 + T cell library stored in HIV and Example 9 of the present embodiment FIG. 9-4 treated infected CD4 + T cells were respectively repository 1 , 10- phenanthroline, Co 2+ , or Ni 2+ treatment, and then the surface marker CD69 expression level was detected by flow cytometry. (Figure 9-6, Extended Data Fig. 16a–e)
实施例10Example 10
采用金属离子、金属螯合剂以及相关的单克隆抗体等抑制人类TRABD2A蛋白活性,能够使得HIV感染的CD4 +T储存库细胞释放HIV-2型病毒并被检测到。 Inhibition of human TRABD2A protein activity by metal ions, metal chelators, and related monoclonal antibodies can cause HIV-infected CD4 + T reservoir cells to release HIV-2 virus and be detected.
将VSV-G和HIV-2 ST组合以感染HIV感染的储存库细胞,以增加HIV-2 ST细胞膜融合。观察到在有Co 2+或者Ni 2+存在的情况下,HIV-2病毒从HIV感染的储存库细胞释放到培养上清液中。具体试验步骤如下:HIV感染的储存库细胞与HIV-2 ST(VSV-G)离心转染。细胞在转染6小时后,清洗两次 以去除投入的病毒,并使用不同浓度的Co 2+和Ni 2+处理。在转染48小时后,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)(图10-1,原Extended Data Fig.20b)。从HIV感染的储存库细胞中提取所有RNA进行qPCR以测量TRABD2A RNA,采用磷酸甘油醛脱氢酶进行归一化。(图10-2,原Extended Data Fig.20c) VSV-G and HIV-2 ST were combined to infect HIV-infected depot cells to increase HIV-2 ST cell membrane fusion. It was observed that in the presence of Co 2+ or Ni 2+ , the HIV-2 virus was released from the HIV-infected reservoir cells into the culture supernatant. The specific test procedure is as follows: HIV-infected depot cells were transfected with HIV-2 ST (VSV-G). After 6 hours of transfection, the cells were washed twice to remove the injected virus and treated with different concentrations of Co 2+ and Ni 2+ . After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (the background RLU was subtracted from each measurement data) (Fig. 10-1, original Extended Data Fig. 20b). All RNA was extracted from HIV-infected depot cells for qPCR to measure TRABD2A RNA, normalized using glyceraldehyde phosphate dehydrogenase. (Figure 10-2, original Extended Data Fig. 20c)
实施例11Example 11
采用siRNA清除人类TRABD2A蛋白后,能够使得HIV感染的储存库细胞感染、释放HIV-2型病毒,并被检测到。Removal of the human TRABD2A protein by siRNA can cause HIV-infected depot cells to infect and release the HIV-2 virus and be detected.
使用针对TRABD2A的小干扰RNA处理后,HIV-2病毒从HIV感染的储存库细胞中释放了出来。具体试验步骤如下:第0天,将针对TRABD2A的siRNA和控制对照组siRNA(siCtrl)分别电击穿注入HIV感染的储存库细胞。第1天,将细胞与HIV-2 ST(VSV-G)离心转染。转染在6小时后,两次清洗以去除投入的病毒。转染后48小时后,培养基用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)(图11-1,原Extended Data Fig.20e)。从HIV感染的储存库库细胞中提取所有RNA进行qPCR以测量TRABD2A RNA,采用磷酸甘油醛脱氢酶进行归一化。(图11-2,原Extended Data Fig.20f) After treatment with small interfering RNA for TRABD2A, HIV-2 virus is released from HIV-infected reservoir cells. The specific test procedure was as follows: On day 0, siRNA against TRABD2A and control control siRNA (siCtrl) were separately injected into HIV-infected reservoir cells by electrical breakdown. On day 1, cells were transfected with HIV-2 ST (VSV-G) by centrifugation. After 6 hours of transfection, two washes were performed to remove the injected virus. 48 hours after transfection, the medium was used to infect TZMbl reporter cells to obtain the release level of the virus (background RLU was subtracted from each measurement data) (Fig. 11-1, original Extended Data Fig. 20e). All RNA was extracted from HIV-infected depot pool cells for qPCR to measure TRABD2A RNA, normalized using glyceraldehyde phosphate dehydrogenase. (Fig. 11-2, original Extended Data Fig.20f)
实施例12Example 12
采用siRNA清除人类TRABD2A蛋白后,能够使得病人体内的储存库细胞感染、释放HIV-1型病毒,并被检测到。Removal of human TRABD2A protein by siRNA can cause infection of the reservoir cells in the patient, release of HIV-1 virus, and detection.
使用两种RNA干扰(RNAi)策略来消除储存库细胞中的TRABD2A蛋白。第一种,将针对TRABD2A的siRNA以电穿孔方式送入储存库细胞中,并在24小时后使用HIV-1 NL4.3进行离心转染(spinoculation)。发现TRABD2A被清除,并且在48小时后,HIV-1病毒大量释放到培养上清液中。同时, HIV-1逆转录分析显示随着TRABD2A的清除,储存库细胞产生了大量的病毒,并且病毒Gag转录水平没有发生变化。具体试验步骤如下:从3个健康的捐赠者体内分离获得储存库细胞,采用针对TRABD2A的siRNA以及控制对照组siRNA分别电击穿注入储存库细胞。在24小时后,细胞与HIV-1 NL4.3离心转染。在6小时后,清洗两次以去除投入的病毒。在转染后1天或2天后,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)(图12-1,原Fig.5f)以及通过逆转录活性检测法(图12-2,原Fig.5g)检测。提取所有的RNA进行qPCR以量化HIV-1 Gag(图12-3,原Fig.5h)和TRABD2A RNA(图12-4,原Fig.5i),使用磷酸甘油醛脱氢酶进行归一化。 Two RNA interference (RNAi) strategies were used to eliminate the TRABD2A protein in the reservoir cells. First, siRNA against TRABD2A was electroporated into reservoir cells and subjected to spinoculation 24 hours later using HIV-1 NL4.3 . TRABD2A was found to be cleared, and after 48 hours, the HIV-1 virus was released in a large amount into the culture supernatant. At the same time, HIV-1 reverse transcription analysis showed that with the clearance of TRABD2A, the reservoir cells produced a large number of viruses, and the viral Gag transcription level did not change. The specific test procedure was as follows: The depot cells were isolated from three healthy donors, and the siRNAs against TRABD2A and the control control siRNA were separately injected into the reservoir cells. After 24 hours, the cells were transfected with HIV-1 NL4.3 . After 6 hours, wash twice to remove the incoming virus. One or two days after transfection, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (the background RLU was subtracted from each measurement) (Fig. 12-1, original Fig. 5f) and Detection by reverse transcription activity assay (Fig. 12-2, original Fig. 5g). All RNA was extracted for qPCR to quantify HIV-1 Gag (Fig. 12-3, original Fig. 5h) and TRABD2A RNA (Fig. 12-4, original Fig. 5i), normalized using glyceraldehyde phosphate dehydrogenase.
第二种,在HIV-1转染前,将siRNA通过串联法送入HIV感染的储存库库细胞。将TRABD2A清除后,HIV-1病毒从HIV感染的储存库细胞中大量释放,并且病毒转录水平保持不变。具体试验步骤如下:将针对TRABD2A的siRNA和控制对照组siRNA分别通过串联法送入HIV感染的储存库细胞中,并将细胞与HIV-1 NL4.3离心转染。转染6小时后,清洗两次以消除投入的病毒。转染后48小时,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)(图12-5,原Extended Data Fig.17b)将RNA从HIV感染的储存库细胞提取出来进行qPCR以测量TRABD2A RNA(图12-6,原Extended Data Fig.17c)和Gag RNA(图12-7,原Extended Data Fig.17d),使用磷酸甘油醛脱氢酶进行归一化。 Second, prior to HIV-1 transfection, siRNA was delivered to HIV-infected depot cells by tandem. After clearance of TRABD2A, HIV-1 virus is released in large quantities from HIV-infected reservoir cells, and viral transcription levels remain unchanged. The specific test procedure was as follows: siRNA against TRABD2A and control control siRNA were separately fed into HIV-infected reservoir cells by tandem method, and the cells were transfected with HIV-1 NL4.3 by centrifugation. After 6 hours of transfection, wash twice to eliminate the input virus. 48 hours after transfection, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (the background RLU was subtracted from each measurement data) (Figure 12-5, former Extended Data Fig. 17b). HIV-infected depot cells were extracted for qPCR to measure TRABD2A RNA (Figure 12-6, former Extended Data Fig. 17c) and Gag RNA (Figure 12-7, former Extended Data Fig. 17d), dehydrogenation using glyceraldehyde phosphate The enzyme is normalized.
实施例13Example 13
采用shRNA清除人类TRABD2A蛋白后,能够使得HIV感染的储存库细胞感染、释放HIV-1型病毒,并被检测到。The use of shRNA to clear human TRABD2A protein can cause HIV-infected depot cells to infect and release HIV-1 virus and be detected.
检测在HIV感染的储存库细胞被激活后,TRABD2A的表达水平以及对于HIV-1感染的敏感度,以确定激活是否是可逆的。首先激活灵长类HIV感染的CD4 +T储存库细胞,并且逐渐降低IL-2浓度以使得CD4 +T细胞回 复到静息状态。TRABD2A的表达水平在激活的1-3天中显著的减少,并且在CD3/CD28激活因子被移除后的第5天开始恢复,并且在第15条达到了可观的程度。具体试验步骤如下:试验流程为:(1)第0天使用CD3CD28和IL2(50U/mL)激活CD4 +T细胞;(2)第3天移除磁珠(beads),IL2含量下降为25U/mL;(3)第5天IL2含量下降为15U/mL;(4)第7天IL2含量下降为7.5U/mL;(5)第9天IL2含量下降为3.75U/mL;(6)第11天IL2含量下降为1.5U/Ml;(7)第13天IL2含量下降为0.75U/mL;(8)第15天进行分析。检测TRABD2A在HIV感染的储存库细胞被激活后的RNA水平,以磷酸甘油醛脱氢酶进行归一化(图13-1,原Extended Data Fig.18b) The level of expression of TRABD2A and the sensitivity to HIV-1 infection after activation of HIV-infected depot cells were examined to determine if activation is reversible. The primate HIV-infected CD4 + T reservoir cells are first activated and the IL-2 concentration is gradually reduced to return the CD4 + T cells to a resting state. The expression level of TRABD2A was significantly reduced in the 1-3 days of activation and began to recover on the 5th day after the CD3/CD28 activator was removed, and reached a considerable extent in Article 15. The specific test procedure is as follows: The test procedure is: (1) CD3 CD28 and IL2 (50 U/mL) are used to activate CD4 + T cells on day 0; (2) Beads are removed on day 3, and IL2 content is decreased to 25 U/ (3) IL2 content decreased to 15 U/mL on day 5; (4) IL2 content decreased to 7.5 U/mL on day 7; (5) IL2 content decreased to 3.75 U/mL on day 9; (6) The IL2 content decreased to 1.5 U/Ml on the 11th day; (7) the IL2 content decreased to 0.75 U/mL on the 13th day; (8) Analysis was performed on the 15th day. The RNA level of TRABD2A after activation of HIV-infected depot cells was detected and normalized by glyceraldehyde phosphate dehydrogenase (Fig. 13-1, former Extended Data Fig. 18b)
使用上述策略处理灵长类CD4 +T细胞,以将针对TRABD2A的慢病毒shRNAs传导入细胞内。这些被shRNAs传导的CD4 +T细胞的激活程度有其CD69表面标记表达水平所决定,显示这些细胞确实处于静息状态。在该过程中,同时使用HIV-1 NL4.3转染上述细胞,发现被清除TRABD2A的HIV感染的CD4 +T储存库细胞能够释放HIV-1病毒,并且Gag转录水平没有变化。具体试验步骤如下:试验流程为:(1)第0天使用CD3CD28和IL2(50U/mL)激活CD4 +T细胞;(2)第3天将shRNAs传导入细胞内,移除磁珠,IL2含量下降为25U/mL;(3)第5天IL2含量下降为15U/mL;(4)第7天IL2含量下降为7.5U/mL;(5)第9天IL2含量下降为3.75U/mL;(6)第11天IL2含量下降为1.5U/Ml;(7)第13天IL2含量下降为0.75U/mL;(8)第14天加入HIV-1 NL4.3转染;(9)第16天进行分析。使用流式细胞仪检测CD69表面标记(图13-2,原Extended Data Fig.18d)。对于第14天进行转染,转染后6小时清洗两次去除投入的病毒。转染48小时后,上清液用于感染TZMbl报告细胞,以得到病毒的释放水平(每次测量数据均已减去背景RLU)(图13-3,原Extended Data Fig.18e)。提取全部的RNA进行qPCR以测量Gag RNA(图13-4,原Extended Data Fig.18f)和TRABD2A RNA(图13-5,原Extended Data Fig.18g) The primate CD4 + T cells were treated using the above strategy to channel lentiviral shRNAs directed against TRABD2A into the cell. The degree of activation of these CD4 + T cells transduced by shRNAs is determined by the level of CD69 surface marker expression, indicating that these cells are indeed at rest. In this process, the above cells were simultaneously transfected with HIV-1 NL4.3 , and it was found that HIV-infected CD4 + T reservoir cells cleared by TRABD2A were able to release HIV-1 virus, and there was no change in Gag transcription level. The specific test procedure is as follows: The test procedure is: (1) CD3CD28 and IL2 (50 U/mL) are used to activate CD4 + T cells on day 0; (2) shRNAs are transferred into cells on day 3, and magnetic beads are removed, IL2 content The decrease was 25 U/mL; (3) the IL2 content decreased to 15 U/mL on the 5th day; (4) the IL2 content decreased to 7.5 U/mL on the 7th day; (5) the IL2 content decreased to 3.75 U/mL on the 9th day; (6) The IL2 content decreased to 1.5 U/Ml on the 11th day; (7) The IL2 content decreased to 0.75 U/mL on the 13th day; (8) The HIV-1 NL4.3 transfection was added on the 14th day; (9) Analysis was performed for 16 days. The CD69 surface marker was detected using a flow cytometer (Fig. 13-2, original Extended Data Fig. 18d). Transfection was performed on day 14, and the virus was removed by washing twice at 6 hours after transfection. After 48 hours of transfection, the supernatant was used to infect TZMbl reporter cells to obtain the release level of the virus (background RLU was subtracted from each measurement data) (Fig. 13-3, original Extended Data Fig. 18e). All RNA was extracted for qPCR to measure Gag RNA (Fig. 13-4, original Extended Data Fig. 18f) and TRABD2A RNA (Fig. 13-5, original Extended Data Fig. 18g)
实施例14Example 14
人类,灵长类,哺乳类动物的TRABD2A蛋白和2B能够高效的抑制HIV-1、HIV-2、SIV以及MLV的侵染。Human, primate, and mammalian TRABD2A proteins and 2B are highly effective in inhibiting the infection of HIV-1, HIV-2, SIV, and MLV.
蛋白质分别表达与293T细胞内,检测病毒侵染能力(Infectivity)。除了斑马鱼(Zebrafish)的TRABD2A蛋白外,HIV-1,-2以及SIV的侵染能力被人类(Human)、黑猩猩(Champanzee)、猕猴(Macaca)、老鼠(Mouse)等各类TRABD2A蛋白和TRABD2B蛋白高效的抑制。Proteins were expressed in 293T cells and tested for virus infectivity (Infectivity). In addition to the TRABD2A protein of Zebrafish, the infectivity of HIV-1, -2 and SIV is TRABD2A protein and TRABD2B by human, chimpanzee, macaque, mouse and mouse. Highly efficient protein inhibition.
具体试验步骤如下:将HIV-1的病毒pNL4.3,HIV-2的病毒HIV-2 ST和SIV mac239同TRABD2A蛋白和TRABD2B蛋白的表达质粒(来自于上海和元生物公司)分别导入HEK293T细胞。48小时后回收病毒上清液,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平,如图14-1所示。 The specific test procedure was as follows: HIV-1 virus pNL4.3, HIV-2 virus HIV-2 ST and SIV mac239 and TRABD2A protein and TRABD2B protein expression plasmid (from Shanghai Heyuan Biotech Co., Ltd.) were introduced into HEK293T cells, respectively. The virus supernatant was recovered after 48 hours, and the supernatant was used to infect TZMbl reporter cells to obtain the infection level of the virus, as shown in Figure 14-1.
类似的另外一组具体试验步骤如下:将HIV-1、HIV-2、SIV质粒和TRABD2A、2B等质粒(来自于上海和元生物公司)一起导入293T细胞,48小时后回收病毒上清液,上清液用于感染TZMbl报告细胞,以得到病毒的感染水平,如图14-2所示。A similar set of specific test procedures is as follows: HIV-1, HIV-2, SIV plasmids and TRABD2A, 2B plasmids (from Shanghai Heyuan Biotech Co., Ltd.) were introduced into 293T cells, and the virus supernatant was recovered 48 hours later. The supernatant was used to infect TZMbl reporter cells to obtain the level of infection of the virus, as shown in Figure 14-2.
实施例15Example 15
抑制或清除TRABD2A蛋白,以进行Push&Kill治疗受HIV感染的病人。Inhibition or clearance of TRABD2A protein for Push & Kill treatment of HIV-infected patients.
采用人类TRABD2A的单克隆抗体,去抑制病人体内的储存库细胞表面TRABD2A蛋白活性。之后,病人体内的储存库细胞即可释放HIV病毒抗原,即可被病人体内的CD8细胞特异识别而杀死。Monoclonal antibodies to human TRABD2A were used to inhibit the activity of TRABD2A protein on the surface of the reservoir cells in patients. After that, the reservoir cells in the patient's body can release the HIV virus antigen, which can be specifically recognized by the CD8 cells in the patient and killed.
具体试验步骤如下:0.5mg/kg用量的人类TRABD2A的单克隆抗体,通过静脉注射进入长期进行ART治疗病人血管。每周注射2-4次,持续1-2 月后,经过抽血化验检测病人体内的储存库库细胞的细胞含量。并以此判断,是否持续注入或者增加单克隆抗体用量。The specific test procedure is as follows: a monoclonal antibody of human TRABD2A in an amount of 0.5 mg/kg is intravenously injected into a blood vessel for long-term ART treatment. 2-4 injections per week, for 1-2 months, after blood test to detect the cell content of the reservoir cells in the patient. In this way, whether to continue to inject or increase the amount of monoclonal antibody.
实施例16Example 16
从长期服药达两年以上的,并且血浆中检测不出的病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内,分离的外周血细胞(PBMCs)。将此PBMCs体外培养,并用TRABD2A的单克隆blocking抗体处理72小时后,检测到HIV存储库细胞开始被清除。Isolated peripheral blood cells (PBMCs) from HIV-1 infected patients who have been taking drugs for more than two years and have no detectable viral load (Viral Load<20 copies/mL). After the PBMCs were cultured in vitro and treated with the monoclonal blocking antibody of TRABD2A for 72 hours, it was detected that the HIV storage cells began to be cleared.
具体步骤如下:抽取50-100mL病人的血液,取其中1-2mL分离血浆,并测定血浆中的病毒载量,剩余的血液用Ficoll抽提外周血单核细胞(PBMC)。并将PBMC按照3X 106/mL培养在含有10%FBS血清的RPMI1640培养基中。不添加任何刺激因子的前提下,加入TRABD2A和对照IgG的抗体,并培养3-5天。然后,回收PBMCs中的所有的CD4 +T细胞,并将回收的CD4 +T细胞用CD3CD28和IL2激活24小时,并检测释放的HIV-1病毒的量,如图15。 The specific steps are as follows: 50-100 mL of the patient's blood is taken, 1-2 mL of the separated plasma is taken, and the viral load in the plasma is measured, and the remaining blood is extracted with Percoll peripheral blood mononuclear cells (PBMC). PBMCs were cultured at 3X 106/mL in RPMI 1640 medium containing 10% FBS serum. TRABD2A and control IgG antibodies were added and incubated for 3-5 days without the addition of any stimulating factors. Then, all CD4 + T cells in PBMCs were recovered, and the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected, as shown in FIG.
由于HIV储存库细胞中的人类TRABD2A蛋白具有抑制HIV-1病毒释放的作用,对于HIV-1有特异性的抑制性,并且参与特异性的降解Gag前体。抑制TRABD2A的活性,就能促发病毒呈递在储存库细胞表面,造成存储库细胞被CD8 +T细胞识别并清除。 Since the human TRABD2A protein in the HIV depot cells has an inhibitory effect on the release of HIV-1 virus, it has specific inhibition to HIV-1 and is involved in the specific degradation of the Gag precursor. Inhibition of TRABD2A activity can trigger viral presentation on the surface of the reservoir cells, causing the reservoir cells to be recognized and cleared by CD8 + T cells.
实施例17Example 17
从长期服药达两年以上的,并且血浆中检测不出的病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内,分离的外周血细胞(PBMCs)。将此类CD8 +T免疫细胞除去和不除去的PBMCs体外培养,并用TRABD2A的单克隆blocking抗体处理72小时后,检测到TRADBD blocking抗体引发免疫CD8 +T细胞清除HIV-1的存储库细胞。 Isolated peripheral blood cells (PBMCs) from HIV-1 infected patients who have been taking drugs for more than two years and have no detectable viral load (Viral Load<20 copies/mL). PBMCs from which such CD8 + T immune cells were removed and not removed were cultured in vitro and treated with the monoclonal blocking antibody of TRABD2A for 72 hours, and it was detected that the TRADAD blocking antibody elicited immunoreactive CD8 + T cells to clear HIV-1 storage cells.
具体步骤如下:抽取50-100mL病人的血液,取其中1-2mL分离血浆,并测定血浆中的病毒载量,剩余的血液用Ficoll抽提外周血单核细胞(PBMC),将得到PBMCs等分二份,其中一份除去CD8 +T细胞之后。将细胞按照3X106/mL培养在含有10%FBS血清的RPMI1640培养基中。不添加任何刺激因子的前提下,加入TRABD2A和对照IgG的抗体,并培养3-5天。然后,回收PBMCs中的所有的CD4 +T细胞,并将回收的CD4 +T细胞用CD3CD28和IL2激活24小时,并检测释放的HIV-1病毒的量。CD8 +T细胞被除去后,储存库细胞不能被清除。具体检测结果如图16 The specific steps are as follows: 50-100 mL of the patient's blood is taken, 1-2 mL of the separated plasma is taken, and the viral load in the plasma is measured, and the remaining blood is extracted with Percoll peripheral blood mononuclear cells (PBMC), and the PBMCs are equally divided. Two copies, one of which was followed by CD8 + T cells. The cells were cultured at 3×10 6 /mL in RPMI1640 medium containing 10% FBS serum. TRABD2A and control IgG antibodies were added and incubated for 3-5 days without the addition of any stimulating factors. Then, all CD4 + T cells in PBMCs were recovered, and the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected. After the CD8 + T cells are removed, the reservoir cells cannot be removed. The specific test results are shown in Figure 16.
实施例18Example 18
从长期服药达两年以上的,并且血浆中检测不出的病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内,分离的外周血细胞(PBMCs)进行体外培养,并用TRABD2A和PD-1的blocking抗体处理72小时后,检测到这两类抗体引发免疫CD8 +T细胞显著杀伤HIV-1的存储库细胞。 Isolated peripheral blood cells (PBMCs) were cultured in vitro from HIV-1 infected patients who had been taking drugs for more than two years and were not detected in plasma (Viral Load<20 copies/mL), and used TRABD2A and PD. After 72 hours of blocking antibody treatment, these two types of antibodies were detected to elicit immunological CD8 + T cells to significantly kill HIV-1 pool cells.
具体步骤如下:抽取50-100mL病人的血液,取其中1-2mL分离血浆,并测定血浆中的病毒载量,剩余的血液用Ficoll抽提外周血单核细胞(PBMC).并将PBMC按照3X 106/mL培养在含有10%FBS血清的RPMI1640培养基中。不添加任何刺激因子的前提下,加入TRABD2A,PD-1或二者联用以及对照IgG的抗体,并培养3-5天。然后,回收PBMCs中的所有的CD4 +T细胞,并将回收的CD4 +T细胞用CD3CD28和IL2激活24小时,并检测释放的HIV-1病毒的量,如图17。 The specific steps are as follows: 50-100 mL of the patient's blood is taken, 1-2 mL of the separated plasma is taken, and the viral load in the plasma is measured, and the remaining blood is extracted with Percoll peripheral blood mononuclear cells (PBMC). The PBMC is 3X. 106/mL was cultured in RPMI1640 medium containing 10% FBS serum. TRABD2A, PD-1 or both were combined with antibodies against IgG and cultured for 3-5 days without the addition of any stimulating factors. Then, all CD4 + T cells in PBMCs were recovered, and the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected, as shown in FIG.
实施例19Example 19
从长期服药达两年以上的,并且血浆中检测不出的病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内,分离的resting CD4 +T和resting CD8 +T细胞,并进行体外培养。CD4 +T细胞用TRABD2A的blocking抗体 处理72小时后,将CD4 +T细胞和用Gag多肽群活化CD8 +T细胞共培养5天,并检测HIV-1存储库细胞的存活率。 Resting CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients who have been taking drugs for more than two years and are not detected in plasma (Viral Load<20copies/mL) In vitro culture. CD4 + T cells were treated with the blocking antibody TRABD2A 72 h, CD4 + T cells with a Gag polypeptide and the activated CD8 + T cell populations were cultured for 5 days, and the survival rate of HIV-1 detection cell repository.
具体步骤如下:抽取50-100mL病人的血液,取其中1-2mL分离血浆,并测定血浆中的病毒载量,剩余的血液用Ficoll抽提外周血单核细胞(PBMC),从PBMC中分别纯化CD4 +以及CD8 +T细胞,将CD4 +T细胞按照3.5X106/mL培养在含有10%FBS血清的RPMI1640培养基中,并加入TRABD2A的blocking抗体以及对照IgG。同时,将CD8 +T细胞按照3.5X 106/mL培养在含有10%FBS血清的RPMI1640培养基中,并加Gag多肽群和IL2。分别培养CD4 +和CD8 +T细胞3天后,将两者合并,再持续培养5天后,回收的CD4 +T细胞,再用CD3CD28和IL2激活24小时,并检测释放的HIV-1病毒的量,如图19。 The specific steps are as follows: 50-100 mL of the patient's blood is taken, 1-2 mL of the separated plasma is taken, and the viral load in the plasma is measured, and the remaining blood is extracted with Percoll peripheral blood mononuclear cells (PBMC) and purified from PBMC. For CD4 + and CD8 + T cells, CD4 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5×10 6 /mL, and blocking antibody of TRABD2A and control IgG were added. At the same time, CD8 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5X 106/mL, and a Gag polypeptide group and IL2 were added. After culturing CD4 + and CD8 + T cells for 3 days, the two were combined, and after 5 days of continuous culture, the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected. See Figure 19.
实施例20Example 20
从长期服药达两年以上的,并且血浆中检测不出的病毒载量(Viral Load<20copies/mL)的HIV-1感染患者体内,分离的resting CD4 +T和resting CD8 +T细胞,并进行体外培养。CD4 +T细胞用TRABD2A的blocking抗体处理72小时后,将CD4 +T细胞和用Gag多肽群活化并用PD-1的blocking抗体处理过的CD8 +T细胞共培养5天,并检测HIV-1存储库细胞的存活率。 Resting CD4 + T and resting CD8 + T cells isolated from HIV-1 infected patients who have been taking drugs for more than two years and are not detected in plasma (Viral Load<20copies/mL) In vitro culture. CD4 + T cells treated with the blocking antibody TRABD2A 72 h, CD4 + T cells and activated with a Gag polypeptide group and treated with PD-1 blocking antibody CD8 + T cells co-cultured for 5 days, and the check memory HIV-1 The survival rate of the library cells.
具体步骤如下:抽取50-100mL病人的血液,取其中1-2mL分离血浆,并测定血浆中的病毒载量,剩余的血液用Ficoll抽提外周血单核细胞(PBMC),从PBMC中分别纯化CD4 +以及CD8 +T细胞,将CD4 +T细胞按照3.5X106/mL培养在含有10%FBS血清的RPMI1640培养基中,并加入TRABD2A的blocking抗体以及对照IgG。同时,将CD8 +T细胞按照3.5X 106/mL培养在含有10%FBS血清的RPMI1640培养基中,并加Gag多肽群和IL2刺激,并用PD-1的blocking抗体和对照IgG抗体处理。分别培养CD4 +和CD8 +T细胞3天后,将两者合并,再持续培养5天后,回收的CD4 +T细胞,再用CD3CD28和IL2激活24小时,并检测释放的HIV-1病毒的量,如图19。 The specific steps are as follows: 50-100 mL of the patient's blood is taken, 1-2 mL of the separated plasma is taken, and the viral load in the plasma is measured, and the remaining blood is extracted with Percoll peripheral blood mononuclear cells (PBMC) and purified from PBMC. For CD4 + and CD8 + T cells, CD4 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5×10 6 /mL, and blocking antibody of TRABD2A and control IgG were added. Meanwhile, CD8 + T cells were cultured in RPMI1640 medium containing 10% FBS serum at 3.5×10 6 /mL, and stimulated with Gag polypeptide group and IL2, and treated with PD-1 blocking antibody and control IgG antibody. After culturing CD4 + and CD8 + T cells for 3 days, the two were combined, and after 5 days of continuous culture, the recovered CD4 + T cells were activated with CD3CD28 and IL2 for 24 hours, and the amount of released HIV-1 virus was detected. See Figure 19.
实施例21Example 21
从长期服药达两年以上的,并且血浆中检测不出的病毒载量(Viral Load<20copies/mL)的HIV-1感染患者意外创伤所取得CNS系统,分离的Microglia细胞和血液中resting CD8+T细胞,并进行体外合并培养。用TRABD2A的blocking抗体和Gag多肽处理96小时后,并检测能够释放HIV-1的Microglia细胞的的存活率,如图20。From the long-term medication for more than two years, and the viral load (Viral Load<20copies/mL) undetectable in the plasma of HIV-1 infected patients, the CNS system was acquired by accidental trauma, and the isolated Microglia cells and resting CD8+ in the blood T cells were cultured in vitro. After 96 hours of treatment with TRABD2A blocking antibody and Gag polypeptide, the survival rate of Microglia cells capable of releasing HIV-1 was examined, as shown in FIG.
虽然本发明以前述的实施例公开如上,然其并非用以限定本发明。本发明所属技术领域中的技术人员,在不脱离本发明的精神和范围内,当可做些许之更改与润饰。因此本发明的保护范围以权利要求书为准。Although the invention is disclosed above in the foregoing embodiments, it is not intended to limit the invention. Those skilled in the art can make some modifications and refinements without departing from the spirit and scope of the invention. Therefore, the scope of the invention is defined by the claims.

Claims (36)

  1. 一种物质在制备用于检测或清除HIV感染的细胞的试剂和/或药物的用途,其特征在于所述物质能够抑制人类TRABD蛋白活性或清除人类TRABD蛋白。Use of a substance for the preparation of an agent and/or a medicament for detecting or eliminating HIV-infected cells, characterized in that the substance is capable of inhibiting human TRABD protein activity or scavenging human TRABD protein.
  2. 如权利要求1所述的用途,其特征在于所述人类TRABD蛋白为TRABD2A。The use according to claim 1, characterized in that the human TRABD protein is TRABD2A.
  3. 如权利要求2所述的用途,其特征在于所述人类TRABD2A蛋白为TRABD2A-201蛋白,所述TRABD2A-201蛋白的氨基酸序列如SEQ ID NO.1所示。The use according to claim 2, wherein the human TRABD2A protein is TRABD2A-201 protein, and the amino acid sequence of the TRABD2A-201 protein is shown in SEQ ID NO.
  4. 如权利要求2所述的用途,其特征在于所述人类TRABD2A蛋白为TRABD2A-202蛋白,所述TRABD2A-202蛋白的氨基酸序列如SEQ ID NO.2所示。The use according to claim 2, wherein the human TRABD2A protein is TRABD2A-202 protein, and the amino acid sequence of the TRABD2A-202 protein is shown in SEQ ID NO.
  5. 如权利要求1-4中任一项所述的用途,其特征在于所述物质为小分子化合物、金属蛋白酶抑制剂、或人类TRABD蛋白特异性抗体。The use according to any one of claims 1 to 4, characterized in that the substance is a small molecule compound, a metalloproteinase inhibitor, or a human TRABD protein-specific antibody.
  6. 如权利要求5所述的用途,其特征在于所述小分子化合物能够与Mn 2+竞争与人类TRABD蛋白的结合。 The use according to claim 5, characterized in that the small molecule compound is capable of competing with Mn 2+ for binding to a human TRABD protein.
  7. 如权利要求6所述的用途,其特征在于所述小分子化合物是不含有Mn 2+的金属离子化合物。 The use according to claim 6, wherein the small molecule compound is a metal ion compound not containing Mn 2+ .
  8. 如权利要求7所述的用途,其特征在于所述金属离子化合物为含有Ni 2+、Co 2+或者Zn 2+的金属离子化合物。 The use according to claim 7, wherein the metal ion compound is a metal ion compound containing Ni 2+ , Co 2+ or Zn 2+ .
  9. 如权利要求5所述的用途,其特征在于所述金属蛋白酶抑制剂为二价金属螯合剂。The use according to claim 5, characterized in that the metalloproteinase inhibitor is a divalent metal chelating agent.
  10. 如权利要求9所述的用途,其特征在于所述二价金属螯合剂为1,10-邻二氮杂菲。The use according to claim 9, wherein the divalent metal chelating agent is 1,10-phenanthroline.
  11. 如权利要求1-10中任一项所述的用途,其特征在于所述物质通过RNAi方法清除细胞表面的人类TRABD蛋白。The use according to any one of claims 1 to 10, characterized in that the substance removes human TRABD protein on the cell surface by an RNAi method.
  12. 如权利要求11所述的用途,其特征在于所述物质为siRNA或者shRNA。The use according to claim 11, characterized in that the substance is siRNA or shRNA.
  13. 如权利要求12所述的用途,其特征在于所述siRNA转染所述细胞。The use according to claim 12, characterized in that the siRNA transfects the cells.
  14. 如权利要求13所述的用途,其特征在于所述siRNA通过电穿孔法或者串联法转染所述细胞。The use according to claim 13, characterized in that the siRNA is transfected into the cells by electroporation or tandem.
  15. 如权利要求12所述的用途,其特征在于所述shRNA转染所述细胞。The use according to claim 12, characterized in that the shRNA transfects the cells.
  16. 一种载体在制备用于检测或清除HIV感染的细胞的试剂和/或药物的用途,其特征在于所述载体包含如权利要求1-15中任一项所述的用途中用于制备检测或清除HIV感染的细胞的试剂和/或药物的物质。Use of a carrier for the preparation of a reagent and/or a medicament for the detection or removal of HIV-infected cells, characterized in that the carrier comprises the use according to any one of claims 1 to 15 for the preparation of a test or A reagent and/or drug substance that removes HIV-infected cells.
  17. 一种检测或清除被HIV感染的细胞的方法,所述方法包括,抑制所述细胞中人类TRABD蛋白活性或清除所述细胞中人类TRABD蛋白,检测所述细胞释放的HIV病毒以检测或清除所述细胞。A method for detecting or eliminating HIV-infected cells, the method comprising: inhibiting human TRABD protein activity in the cell or clearing a human TRABD protein in the cell, detecting the HIV virus released by the cell to detect or clear the Said cells.
  18. 如权利要求17所述的方法,其特征在于使用根据权利要求1-15中任一项所制备的任一试剂处理所述细胞。The method of claim 17 wherein said cells are treated with any of the agents prepared according to any one of claims 1-15.
  19. 如权利要求17或18所述的方法,其特征在于所述细胞为HIV储存库细胞。A method according to claim 17 or 18, wherein said cells are HIV reservoir cells.
  20. 如权利要求17或18所述的方法,其特征在于所述细胞为HIV感染的CD4 +T细胞。 The method according to claim 17 or 18, wherein the cells are HIV-infected CD4 + T cells.
  21. 如权利要求17或18所述的方法,其特征在于所述细胞为HIV感染的外周血细胞。The method according to claim 17 or 18, wherein the cells are HIV-infected peripheral blood cells.
  22. 如权利要求17或18所述的方法,其特征在于所述细胞为HIV感染的静息的CD4 +T细胞。 The method of claim 17 or 18, wherein said cells are HIV-infected resting CD4 + T cells.
  23. 如权利要求17或18所述的方法,其特征在于所述细胞为HIV感染的NK细胞。The method according to claim 17 or 18, wherein the cells are HIV-infected NK cells.
  24. 如权利要求17或18所述的方法,其特征在于所述细胞为HIV感染的脑细胞。The method according to claim 17 or 18, wherein the cells are HIV-infected brain cells.
  25. 一种物质在制备提高细胞抵抗HIV和/或SIV感染能力或者降低被感染细胞释放HIV和/或SIV子代病毒的试剂的用途,其特征在于所述物质为TRABD蛋白的表达质粒。Use of a substance for the preparation of an agent for increasing the ability of a cell to resist HIV and/or SIV infection or for reducing the release of HIV and/or SIV progeny virus by an infected cell, characterized in that the substance is an expression plasmid for a TRABD protein.
  26. 如权利要求25所述的用途,其特征在于所述TRABD蛋白的表达质粒是TRABD2A蛋白的表达质粒。The use according to claim 25, wherein the expression plasmid of the TRABD protein is an expression plasmid of the TRABD2A protein.
  27. 如权利要求26所述的用途,其特征在于TRABD2A蛋白的表达质粒是人类、灵长类或哺乳类动物的TRABD2A蛋白的表达质粒。The use according to claim 26, characterized in that the expression plasmid for the TRABD2A protein is an expression plasmid for the TRABD2A protein of human, primate or mammalian animals.
  28. 如权利要求25所述的用途,其特征在于所述TRABD蛋白的表达质粒是TRABD2B蛋白的表达质粒。The use according to claim 25, characterized in that the expression plasmid of the TRABD protein is an expression plasmid of the TRABD2B protein.
  29. 如权利要求28所述的用途,其特征在于TRABD2B蛋白的表达质粒是人类、灵长类或哺乳类动物的TRABD2B蛋白的表达质粒。The use according to claim 28, characterized in that the expression plasmid for the TRABD2B protein is an expression plasmid for the TRABD2B protein of human, primate or mammalian animals.
  30. 如权利要求25-29中任一项所述的用途,其特征在于所述细胞是已经感染了HIV和/或SIV的细胞。Use according to any of claims 25-29, characterized in that the cells are cells which have been infected with HIV and/or SIV.
  31. 如权利要求30所述的用途,其特征在于所述细胞是已经感染了HIV和/或SIV的CD4 +T细胞。 The use according to claim 30, characterized in that the cells are CD4 + T cells which have been infected with HIV and/or SIV.
  32. 一种载体在制备提高细胞抵抗HIV和/或SIV感染能力或者降低被感染细胞释放HIV和/或SIV子代病毒的试剂的用途,其特征在于所述载体包含权利要求25-31中任一项所述的用途中用于制备所述试剂的物质。Use of a vector for the preparation of an agent for increasing the ability of a cell to resist HIV and/or SIV infection or for reducing the release of HIV and/or SIV progeny virus by an infected cell, characterized in that the vector comprises any one of claims 25-31 A substance used in the preparation for the preparation of the reagent.
  33. 一种筛选能够清除或检测被HIV和/或SIV感染的细胞的物质的方法,所述方法包括筛选出能够抑制TRABD蛋白活性或清除TRABD蛋白的物质。A method of screening for a substance capable of scavenging or detecting cells infected with HIV and/or SIV, the method comprising screening for a substance capable of inhibiting TRABD protein activity or clearing TRABD protein.
  34. 如权利要求33所述的方法,其特征在于所述物质能够抑制人类、灵长类或哺乳类动物TRABD蛋白活性,或清除人类、灵长类或哺乳类动物TRABD蛋白。30. The method of claim 33, wherein the substance is capable of inhibiting TRABD protein activity in humans, primates or mammals, or scavenging human, primate or mammalian TRABD proteins.
  35. 如权利要求33或34所述的方法,所述方法包括进行细胞实验和/或动物试验,以筛选出能够抑制TRABD蛋白活性或清除TRABD蛋白的物质。30. The method of claim 33 or 34, comprising performing a cell assay and/or an animal assay to screen for a substance capable of inhibiting TRABD protein activity or clearing TRABD protein.
  36. 如权利要求35所述的方法,其特征在于使用猕猴进行所述细胞实验和/或动物实验。The method of claim 35, wherein said cellular experiments and/or animal experiments are performed using macaques.
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