WO2019108788A1 - Biguanide compositions and methods related thereto - Google Patents

Biguanide compositions and methods related thereto Download PDF

Info

Publication number
WO2019108788A1
WO2019108788A1 PCT/US2018/063058 US2018063058W WO2019108788A1 WO 2019108788 A1 WO2019108788 A1 WO 2019108788A1 US 2018063058 W US2018063058 W US 2018063058W WO 2019108788 A1 WO2019108788 A1 WO 2019108788A1
Authority
WO
WIPO (PCT)
Prior art keywords
alkyl
cancer
hydrogen
cycloalkyl
aryl
Prior art date
Application number
PCT/US2018/063058
Other languages
French (fr)
Inventor
Jennifer M. MURPHY
Michael E. Jung
Richard J. Pietras
Begonya COMIN-ANDUIX
Diana C. Marquez-Garban
Original Assignee
The Regents Of The University Of California
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by The Regents Of The University Of California filed Critical The Regents Of The University Of California
Publication of WO2019108788A1 publication Critical patent/WO2019108788A1/en

Links

Classifications

    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/40Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
    • A61K31/4025Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil not condensed and containing further heterocyclic rings, e.g. cromakalim
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/445Non condensed piperidines, e.g. piperocaine
    • A61K31/4523Non condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems
    • A61K31/454Non condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. pimozide, domperidone
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/445Non condensed piperidines, e.g. piperocaine
    • A61K31/4523Non condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems
    • A61K31/4545Non condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a six-membered ring with nitrogen as a ring hetero atom, e.g. pipamperone, anabasine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K45/00Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
    • A61K45/06Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca

Definitions

  • Metformin analogues have shown some potential as cancer treatments.
  • U.S. Patent Pub. No. 2015/0158832 which is incorporated by reference herein in its entirety, provides a number of such analogues.
  • Immune checkpoint inhibitors such as anti-PDl, anti- PD-L1, anti-CTLA-4 and anti-CD47 antibodies have also shown antitumor efficacy as single agents in some patients afflicted with melanoma, non-small cell lung cancer, renal cell carcinoma as well as bladder, gynecologic and breast cancers and a number of other malignancies. Extending the benefits of immunotherapies to greater numbers of patients afflicted with cancer is an important clinical goal going forward.
  • the present disclosure provides compounds and compositions of formula I and pharmaceutically acceptable salts thereof:
  • R 1 is H, alkyl or alkoxy
  • R 2 is H, alkyl or alkoxy; or R 1 and R 2 , taken together, complete a 5-10 member heterocycle
  • R 3 is H, alkyl or alkoxy
  • R 4 is H, alkyl or alkoxy; or R 3 and R 4 , taken together, complete a 5-10 member heterocycle.
  • the present disclosure provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of formula A, or a pharmaceutically acceptable salt thereof, and an immune therapy:
  • L 1 and L 2 are independently a bond or -NH-C(NH)-;
  • R A is -NR'R 2 , alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; R 1 and R 2 taken together with the N that separate them complete a heterocycle;
  • R B is -NR 3 R 4 , alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; or R 3 and R 4 taken together with the N that separate them complete a heterocycle;
  • R 1 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
  • R 2 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
  • R 3 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
  • R 4 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
  • R c is hydrogen or C1-C5 alkyl
  • R 5 is hydrogen, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl.
  • the compound of formula A is a compound of formula I:
  • R 1 is H, alkyl or alkoxy
  • R 2 is H, alkyl or alkoxy; or R 1 and R 2 , taken together, complete a 5-10 member heterocycle
  • R 3 is H, alkyl or alkoxy
  • R 4 is H, alkyl or alkoxy; or R 3 and R 4 , taken together, complete a 5-10 member heterocycle.
  • R 1 and R 2 are methyl, then R 3 and R 4 are not both hydrogen.
  • R 1 is methoxy and R 2 is methyl.
  • R 1 is propyl and R 2 is methyl.
  • the compound is of formula la, or a pharmaceutically acceptable salt thereof:
  • n 0, 1, 2, or 3;
  • n 0, 1, 2, or 3.
  • n and n are both 1.
  • the immune therapy is an immune checkpoint inhibitor, an indoleamine 2,3 -di oxygenase inhibitor, or an adoptive cell transfer therapy.
  • the immune therapy is an immune checkpoint inhibitor selected from anti-PD-l, anti-PD-Ll, or anti-CTLA-4.
  • the immune checkpoint inhibitor is nivolumab
  • pembrolizumab pembrolizumab, atezolizumab, durvalumab, avelumab, or ipilumumab.
  • the present disclosure provides methods of treating cancer, comprising administering a compound or composition of formula I to a patient in need thereof.
  • the present disclosure is directed to a method for treating a cancer, comprising administering a composition as described herein to a patient in need thereof.
  • the present disclosure is directed to a method for treating a cancer, comprising administering conjointly a compound of formula A, or a pharmaceutically acceptable salt thereof, and an immune therapy:
  • L 1 and L 2 are independently a bond or -NH-C(NH)-;
  • R A is -NR'R 2 , alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; R 1 and R 2 taken together with the N that separate them complete a heterocycle;
  • R B is -NR 3 R 4 , alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; or R 3 and R 4 taken together with the N that separate them complete a heterocycle;
  • R 1 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
  • R 2 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
  • R 3 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
  • R 4 is hydrogen, -OR 5 , alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
  • R c is hydrogen or C1-C5 alkyl
  • R 5 is hydrogen, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl.
  • the compound of formula A is a compound of formula I:
  • R 1 is H, alkyl or alkoxy
  • R 2 is H, alkyl or alkoxy; or R 1 and R 2 , taken together, complete a 5-10 member heterocycle
  • R 3 is H, alkyl or alkoxy
  • R 4 is H, alkyl or alkoxy; or R 3 and R 4 , taken together, complete a 5-10 member heterocycle.
  • R 1 and R 2 are methyl, then R 3 and R 4 are not both hydrogen.
  • R 1 is methoxy and R 2 is methyl.
  • R 1 is propyl and R 2 is methyl.
  • R 3 and R 4 are H.
  • the compound is of formula la, or a pharmaceutically acceptable salt thereof:
  • n 0, 1, 2, or 3;
  • n 0, 1, 2, or 3.
  • n and n are both 1.
  • the immune therapy is an immune checkpoint inhibitor, an indoleamine 2,3 -di oxygenase inhibitor, or an adoptive cell transfer therapy.
  • the immune therapy is an immune checkpoint inhibitor selected from anti-PD-l, anti-PD-Ll, anti-CTLA-4 or anti-CD47.
  • the immune checkpoint inhibitor is nivolumab
  • pembrolizumab pembrolizumab, atezolizumab, durvalumab, avelumab, or ipilumumab.
  • the cancer is leukemia, lymphoma, Hodgkins lymphoma, colon cancer, breast cancer, prostate cancer, lung cancer, skin cancer, liver cancer, pancreatic cancer, ovarian cancer, bladder cancer, kidney cancer, bile duct cancer, esophageal cancer, cervical cancer, endometrial cancer, melanoma, head and neck cancer, brain cancer, glioma, neuroblastoma, osteosarcoma, chondrosarcoma, gastric carcinoma, glioma, mesothelioma, Kaposi sarcoma, liposarcoma, synovial sarcoma, or Wilm’s tumor.
  • the cancer is melanoma, non-small cell lung cancer, renal cell carcinoma, bladder cancer, triple-negative breast cancer, or a gynecologic cancer such as endometrial, cervical, or ovarian cancer.
  • the cancer is breast cancer, such as triple-negative breast cancer.
  • FIG. 1A shows inhibition of human MDA-MB-231 tumor xenograft progression by metformin analogue 005.
  • TNBC subcutaneous xenografts are used with 5 mice/group.
  • Metformin 250 mg/kg
  • analogue 005 50 mg/kg or control were given Qd by oral gavage after tumors were 50-75 mm 3 .
  • Antitumor effects of analogue 005 exceeded those of metformin or controls (P ⁇ 0.00l).
  • mouse body weights were not significantly different from controls in the analogue group, suggesting little toxicity in vivo.
  • FIG. IB shows suppression of 4T1 TNBC xenograft progression in vivo in syngeneic, immune-competent BALB/c mouse models.
  • B ALB/c female mice (6-7 wk old) were injected in the flanks with 1 x 10 5 4T1 cells s.c. using established methods. Mice were randomized when tumor volumes were 200-250 mm 3 .
  • mice were divided into groups: (a) vehicle control (CON), (b) metformin analogue 006 (50 mg/kg/day by oral gavage) (006), (c) anti-PD-Ll antibody (Biolegend anti-CD274/B7-Hl/PD-Ll clone 10F.9G2, 100 pg/mouse IP diluted in PBS, Q3 days) (PD-L1) and (d) dual treatment with both 006 and anti-PD-Ll (006 + PD-L1). Tumor sizes were recorded every 2-3 days; mice were weighed twice weekly. Analogue 006 alone or with anti-PD-Ll suppresses TNBC progression in vivo versus controls (*P ⁇ 0.001, t-test). Studies used 5 mice/group. Of note, dual treatment with 006 + anti-PD-Ll also shows a significantly greater effect at suppressing 4T1 TNBC growth than that of anti- PD-Ll alone. .
  • FIG. 2A Fold change in CD8+ T-cell infiltration in tumors after treatment with metformin analogue 006 relative to the vehicle- treated control group.
  • FIGs. 2B and 2C show increased expression of biomarkers for CD8+-TIL population activation.
  • Single cell suspensions were isolated from 4T1 tumors grown in BALB/c mice and stained with different antibodies against cell surface, nuclear and secreted proteins. After staining, cell suspensions were fixed, processed and subjected to mass cytometry.
  • Figure panels show CD8+ T-cell expression of different activation markers following treatments: FIG 2B: Interferon gamma (IFNy), FIG. 2C: proliferation marker Ki-67.
  • IFNy Interferon gamma
  • Ki-67 proliferation marker Ki-67.
  • FIGs. 3A and 3B show that combination therapy with biguanide 006 and anti-PD-Ll antibody results in an apparent decrease in the expansion of G-MDSCs derived from tumors of BALB/c mice with 4T1 breast tumor implants.
  • FIG. 3A shows a graphic representation of a viSNE clustering analysis using Cytobank that defines populations of distinct immune cells from tumors and spleens. Equal event sampling using 10,000 events per individual sample was used.
  • FIG. 3C shows a mass cytometry gating strategy using a Helios cyTOF platform (representative example). The sequential gating strategy for analysis of spleen and tumor cell subsets is shown. Dead cell events and CyTOF calibration beads were excluded before gating on CD45+ leukocytes. Single cell events were identified using Iridium-Intercalator according to manufacturer’s protocol.
  • Distinct immune cell subsets were further analyzed for differences in functional marker expression, CD3+CD4 and CD3+CD8+ lymphocytes, granulocytic myeloid suppressor cells (G-MDSC, CD1 lb+Ly6G hi Ly6C low ), monocytic myeloid suppressor cells (M-MDSC CD1 lb+ Ly6C hi Ly6G low ), regulatory dendritic cells (rDCs - CD 11 c+CD 11 C-MHCII+), myeloid dendritic cells (mDCs - CD1 lc+ MHCII+), macrophages (Macro, CD1 lb+, F4/80+) and Tregs among others (CD4+CD25+ FoxP3+).
  • FIG. 4 shows that biguanide 006 inhibits expansion of human myeloid derived suppressor cells (MDSC) derived from bone marrow of breast cancer patients.
  • MDSC human myeloid derived suppressor cells
  • Bone marrow cells were incubated in the presence of GM-CSF and IL-6 for 6 days in RPMI medium + 15% FBS in the presence of vehicle or 1 mM biguanide 006. After 6 days cells were subjected to flow cytometry as described before (1,2).
  • the graph shows the total number of MDSC (CD45+CD3-Cdl9-CDl9-CD20-Cd56-) after expansion as described before (see 14- -21).
  • compositions of metformin and analogues with immune checkpoint inhibitors and related methods of treatment.
  • Metformin analogues enhance the therapeutic benefit of immune checkpoint inhibitors in triple-negative breast cancer as well as in other malignancies.
  • Metformin analogues block the expansion and activation of myeloid-derived suppressor cells that would otherwise allow tumors to escape immune surveillance and attack.
  • metformin analogues impact the trafficking and activity of other immune cells such as CD8-positive T-cells and potentially subsets of tumor- associated macrophages and dendritic cell subpopulations..
  • the antitumor effects elicited by these new metformin analogues and their interactions with immune checkpoint inhibitors are expected to boost antitumor activity of immune checkpoint inhibitors and address an unmet clinical need.
  • Metformin belongs to the biguanide class of pharmaceuticals and exhibits modest activity as a single agent against triple-negative breast cancer (TNBC) in preclinical and early clinical reports (1-3). Treatment of diabetic patients with metformin, but not other antidiabetes drugs, is associated with a 30-40% reduction in the incidence of cancer (4-6); yet the underlying mechanism of these outcomes is poorly understood. Emerging evidence suggests that the reported antitumor activity of metformin may be in part immune-mediated (7).
  • TNBC triple-negative breast cancer
  • compositions and methods of the present disclosure seek to more effectively harness the immune response and, ultimately, provide a new treatment option for TNBC patients.
  • the metformin analogues shown in the following scheme were prepared and their IC50S determined based on in vitro assays of MDA-MB-231 human TNBC cell proliferation over a range of doses using established methods (27, 28).
  • the observed antitumor effects of these biguanides may be a result of direct AMPK-cell signaling modulation in addition to indirect immunomodulatory effects via trafficking of CD8 + TILs and inhibition of MDSC expansion and activity.
  • compositions and methods of the present invention may be utilized to treat an individual in need thereof.
  • the individual is a mammal such as a human, or a non-human mammal.
  • the composition or the compound is preferably administered as a pharmaceutical composition comprising, for example, a compound of the invention and a pharmaceutically acceptable carrier.
  • Pharmaceutically acceptable carriers are well known in the art and include, for example, aqueous solutions such as water or physiologically buffered saline or other solvents or vehicles such as glycols, glycerol, oils such as olive oil, or injectable organic esters.
  • aqueous solutions such as water or physiologically buffered saline or other solvents or vehicles
  • glycols, glycerol such as olive oil, or injectable organic esters.
  • the aqueous solution is pyrogen-free, or substantially pyrogen-free.
  • the excipients can be chosen, for example, to effect delayed release of an agent or to selectively target one or more cells, tissues or organs.
  • the pharmaceutical composition can be in dosage unit form such as tablet, capsule (including sprinkle capsule and gelatin capsule), granule, lyophile for reconstitution, powder, solution, syrup, suppository, injection or the like.
  • the composition can also be present in a transdermal delivery system, e.g., a skin patch.
  • the composition can also be present in a solution suitable for topical administration, such as a lotion, cream, or ointment.
  • a pharmaceutically acceptable carrier can contain physiologically acceptable agents that act, for example, to stabilize, increase solubility or to increase the absorption of a compound such as a compound of the invention.
  • physiologically acceptable agents include, for example, carbohydrates, such as glucose, sucrose or dextrans, antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins or other stabilizers or excipients.
  • the choice of a pharmaceutically acceptable carrier, including a physiologically acceptable agent depends, for example, on the route of administration of the composition.
  • the preparation or pharmaceutical composition can be a selfemulsifying drug delivery system or a selfmicroemulsifying drug delivery system.
  • the pharmaceutical composition also can be a liposome or other polymer matrix, which can have incorporated therein, for example, a compound of the invention.
  • Liposomes for example, which comprise phospholipids or other lipids, are nontoxic, physiologically acceptable and metabolizable carriers that are relatively simple to make and administer.
  • phrases "pharmaceutically acceptable” is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
  • phrases "pharmaceutically acceptable carrier” as used herein means a
  • composition or vehicle such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material.
  • a liquid or solid filler such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material.
  • Each carrier must be “acceptable” in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient.
  • materials which can serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide;
  • transdermally for example as a patch applied to the skin
  • topically for example, as a cream, ointment or spray applied to the skin
  • the compound may also be formulated for inhalation.
  • a compound may be simply dissolved or suspended in sterile water. Details of appropriate routes of administration and compositions suitable for same can be found in, for example, U.S. Pat. Nos. 6,110,973, 5,763,493, 5,731,000,
  • the formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy.
  • the amount of active ingredient which can be combined with a carrier material to produce a single dosage form will vary depending upon the host being treated, the particular mode of administration.
  • the amount of active ingredient that can be combined with a carrier material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect. Generally, out of one hundred percent, this amount will range from about 1 percent to about ninety-nine percent of active ingredient, preferably from about 5 percent to about 70 percent, most preferably from about 10 percent to about 30 percent.
  • Methods of preparing these formulations or compositions include the step of bringing into association an active compound, such as a compound of the invention, with the carrier and, optionally, one or more accessory ingredients.
  • an active compound such as a compound of the invention
  • the formulations are prepared by uniformly and intimately bringing into association a compound of the present invention with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
  • Formulations of the invention suitable for oral administration may be in the form of capsules (including sprinkle capsules and gelatin capsules), cachets, pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth), lyophile, powders, granules, or as a solution or a suspension in an aqueous or non-aqueous liquid, or as an oil-in- water or water-in-oil liquid emulsion, or as an elixir or syrup, or as pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as mouth washes and the like, each containing a predetermined amount of a compound of the present invention as an active ingredient.
  • Compositions or compounds may also be administered as a bolus, electuary or paste.
  • the active ingredient is mixed with one or more pharmaceutically acceptable carriers, such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; (2) binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; (3) humectants, such as glycerol; (4) disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate; (5) solution retarding agents, such as paraffin; (6) absorption accelerators, such as quaternary ammonium compounds; (7) wetting agents,
  • pharmaceutically acceptable carriers such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose
  • compositions may also comprise buffering agents.
  • Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugars, as well as high molecular weight polyethylene glycols and the like.
  • a tablet may be made by compression or molding, optionally with one or more accessory ingredients.
  • Compressed tablets may be prepared using binder (for example, gelatin or hydroxypropylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (for example, sodium starch glycolate or cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent.
  • Molded tablets may be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
  • the tablets, and other solid dosage forms of the pharmaceutical compositions may optionally be scored or prepared with coatings and shells, such as enteric coatings and other coatings well known in the pharmaceutical-formulating art. They may also be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxypropylmethyl cellulose in varying proportions to provide the desired release profile, other polymer matrices, liposomes and/or microspheres.
  • compositions may be sterilized by, for example, filtration through a bacteria-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions that can be dissolved in sterile water, or some other sterile injectable medium immediately before use.
  • These compositions may also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract, optionally, in a delayed manner.
  • embedding compositions that can be used include polymeric substances and waxes.
  • the active ingredient can also be in micro- encapsulated form, if appropriate, with one or more of the above-described excipients.
  • Liquid dosage forms useful for oral administration include pharmaceutically acceptable emulsions, lyophiles for reconstitution, microemulsions, solutions, suspensions, syrups and elixirs.
  • the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, cyclodextrins and derivatives thereof, solubilizing agents and emulsifiers, such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1, 3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
  • inert diluents commonly used in the art, such as
  • the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents.
  • adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents.
  • Suspensions in addition to the active compounds, may contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
  • suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
  • Dosage forms for the topical or transdermal administration include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants.
  • the active compound may be mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that may be required.
  • the ointments, pastes, creams and gels may contain, in addition to an active compound, excipients, such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • Powders and sprays can contain, in addition to an active compound, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances.
  • Sprays can additionally contain customary propellants, such as chlorofluorohydrocarbons and volatile unsubstituted hydrocarbons, such as butane and propane.
  • Transdermal patches have the added advantage of providing controlled delivery of a compound of the present invention to the body.
  • dosage forms can be made by dissolving or dispersing the active compound in the proper medium.
  • Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate of such flux can be controlled by either providing a rate controlling membrane or dispersing the compound in a polymer matrix or gel.
  • parenteral administration and “administered parenterally” as used herein means modes of administration other than enteral and topical administration, usually by injection, and includes, without limitation, intravenous, intraocular (such as intravitreal), intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion.
  • intravenous, intraocular such as intravitreal
  • intramuscular intraarterial
  • intrathecal intracapsular
  • intraorbital intracardiac
  • intradermal intraperitoneal
  • transtracheal subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion.
  • compositions suitable for parenteral administration comprise one or more active compounds in combination with one or more pharmaceutically acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents.
  • aqueous and nonaqueous carriers examples include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate.
  • polyols such as glycerol, propylene glycol, polyethylene glycol, and the like
  • vegetable oils such as olive oil
  • injectable organic esters such as ethyl oleate.
  • Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
  • These compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents.
  • microorganisms Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents that delay absorption such as aluminum monostearate and gelatin.
  • antibacterial and antifungal agents for example, paraben, chlorobutanol, phenol sorbic acid, and the like.
  • isotonic agents such as sugars, sodium chloride, and the like into the compositions.
  • prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents that delay absorption such as aluminum monostearate and gelatin.
  • a liquid suspension of crystalline or amorphous material having poor water solubility The rate of absorption of the drug then depends upon its rate of dissolution, which, in turn, may depend upon crystal size and crystalline form.
  • delayed absorption of a parenterally administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle.
  • Injectable depot forms are made by forming microencapsulated matrices of the subject compounds in biodegradable polymers such as polylactide-polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular polymer employed, the rate of drug release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly (anhydrides). Depot injectable formulations are also prepared by entrapping the drug in liposomes or microemulsions that are compatible with body tissue.
  • active compounds can be given per se or as a pharmaceutical composition containing, for example, 0.1 to 99.5% (more preferably, 0.5 to 90%) of active ingredient in combination with a pharmaceutically acceptable carrier.
  • Methods of introduction may also be provided by rechargeable or biodegradable devices.
  • Various slow release polymeric devices have been developed and tested in vivo in recent years for the controlled delivery of drugs, including proteinaceous biopharmaceuticals.
  • a variety of biocompatible polymers including hydrogels, including both biodegradable and non-degradable polymers, can be used to form an implant for the sustained release of a compound at a particular target site.
  • Actual dosage levels of the active ingredients in the pharmaceutical compositions may be varied so as to obtain an amount of the active ingredient that is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of
  • the selected dosage level will depend upon a variety of factors including the activity of the particular compound or combination of compounds employed, or the ester, salt or amide thereof, the route of administration, the time of administration, the rate of excretion of the particular compound(s) being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular compound(s) employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
  • a physician or veterinarian having ordinary skill in the art can readily determine and prescribe the therapeutically effective amount of the pharmaceutical composition required.
  • the physician or veterinarian could start doses of the pharmaceutical composition or compound at levels lower than that required in order to achieve the desired therapeutic effect and gradually increase the dosage until the desired effect is achieved.
  • therapeutically effective amount is meant the concentration of a compound that is sufficient to elicit the desired therapeutic effect. It is generally understood that the effective amount of the compound will vary according to the weight, sex, age, and medical history of the subject. Other factors which influence the effective amount may include, but are not limited to, the severity of the patient's condition, the disorder being treated, the stability of the compound, and, if desired, another type of therapeutic agent being administered with the compound of the invention.
  • a larger total dose can be delivered by multiple administrations of the agent.
  • Methods to determine efficacy and dosage are known to those skilled in the art (Isselbacher et al. (1996) Harrison’s Principles of Internal Medicine 13 ed., 1814-1882, herein incorporated by reference).
  • a suitable daily dose of an active compound used in the compositions and methods of the invention will be that amount of the compound that is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above.
  • the effective daily dose of the active compound may be administered as one, two, three, four, five, six or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms.
  • the active compound may be administered two or three times daily.
  • the active compound will be administered once daily.
  • the patient receiving this treatment is any animal in need, including primates, in particular humans; and other mammals such as equines, cattle, swine, sheep, cats, and dogs; poultry; and pets in general.
  • compounds of the invention may be used alone or conjointly administered with another type of therapeutic agent.
  • contemplated salts of the invention include, but are not limited to, alkyl, dialkyl, trialkyl or tetra-alkyl ammonium salts.
  • contemplated salts of the invention include, but are not limited to, L-arginine, benenthamine, benzathine, betaine, calcium hydroxide, choline, deanol, diethanolamine, diethylamine, 2- (diethylamino)ethanol, ethanolamine, ethylenediamine, N-methylglucamine, hydrabamine, lH-imidazole, lithium, L-lysine, magnesium, 4-(2-hydroxyethyl)morpholine, piperazine, potassium, 1 -(2-hydroxy ethyljpyrrolidine, sodium, triethanolamine, tromethamine, and zinc salts.
  • contemplated salts of the invention include, but are not limited to, Na, Ca, K, Mg, Zn or other metal salts.
  • contemplated salts of the invention include, but are not limited to, l-hydroxy-2-naphthoic acid, 2,2-dichloroacetic acid, 2-hydroxyethanesulfonic acid, 2-oxoglutaric acid, 4-acetamidobenzoic acid, 4-aminosalicylic acid, acetic acid, adipic acid, l-ascorbic acid, l-aspartic acid, benzenesulfonic acid, benzoic acid, (+)-camphoric acid, (+)-camphor-lO-sulfonic acid, capric acid (decanoic acid), caproic acid (hexanoic acid), caprylic acid (octanoic acid), carbonic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfur
  • the pharmaceutically acceptable acid addition salts can also exist as various solvates, such as with water, methanol, ethanol, dimethylformamide, and the like. Mixtures of such solvates can also be prepared.
  • the source of such solvate can be from the solvent of crystallization, inherent in the solvent of preparation or crystallization, or adventitious to such solvent.
  • wetting agents such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
  • antioxidants examples include: (1) water-soluble antioxidants, such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium metabi sulfite, sodium sulfite and the like; (2) oil-soluble antioxidants, such as ascorbyl palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), lecithin, propyl gallate, alpha-tocopherol, and the like; and (3) metal-chelating agents, such as citric acid, ethylenediamine tetraacetic acid (EDTA), sorbitol, tartaric acid, phosphoric acid, and the like.
  • water-soluble antioxidants such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium metabi sulfite, sodium sulfite and the like
  • oil-soluble antioxidants such as ascorbyl palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (
  • agent is used herein to denote a chemical compound (such as an organic or inorganic compound, a mixture of chemical compounds), a biological macromolecule (such as a nucleic acid, an antibody, including parts thereof as well as humanized, chimeric and human antibodies and monoclonal antibodies, a protein or portion thereof, e.g., a peptide, a lipid, a carbohydrate), or an extract made from biological materials such as bacteria, plants, fungi, or animal (particularly mammalian) cells or tissues.
  • Agents include, for example, agents whose structure is known, and those whose structure is not known.
  • A“patient,”“subject,” or“individual” are used interchangeably and refer to either a human or a non-human animal. These terms include mammals, such as humans, primates, livestock animals (including bovines, porcines, etc.), companion animals (e.g., canines, felines, etc.) and rodents (e.g., mice and rats).
  • Treating” a condition or patient refers to taking steps to obtain beneficial or desired results, including clinical results.
  • treatment is an approach for obtaining beneficial or desired results, including clinical results.
  • Beneficial or desired clinical results can include, but are not limited to, alleviation or amelioration of one or more symptoms or conditions, diminishment of extent of disease, stabilized (i.e. not worsening) state of disease, preventing spread of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total), whether detectable or undetectable.“Treatment” can also mean prolonging survival as compared to expected survival if not receiving treatment.
  • preventing is art-recognized, and when used in relation to a condition, such as a local recurrence (e.g., pain), a disease such as cancer, a syndrome complex such as heart failure or any other medical condition, is well understood in the art, and includes administration of a composition which reduces the frequency of, or delays the onset of, symptoms of a medical condition in a subject relative to a subject which does not receive the composition.
  • a condition such as a local recurrence (e.g., pain)
  • a disease such as cancer
  • a syndrome complex such as heart failure or any other medical condition
  • prevention of cancer includes, for example, reducing the number of detectable cancerous growths in a population of patients receiving a prophylactic treatment relative to an untreated control population, and/or delaying the appearance of detectable cancerous growths in a treated population versus an untreated control population, e.g., by a statistically and/or clinically significant amount.
  • administering or“administration of’ a substance, a compound or an agent to a subject can be carried out using one of a variety of methods known to those skilled in the art.
  • a compound or an agent can be administered, intravenously, arterially, intradermally, intramuscularly, intraperitoneally, subcutaneously, ocularly, sublingually, orally (by ingestion), intranasally (by inhalation), intraspinally, intracerebrally, and transdermally (by absorption, e.g., through a skin duct).
  • a compound or agent can also appropriately be introduced by rechargeable or biodegradable polymeric devices or other devices, e.g., patches and pumps, or formulations, which provide for the extended, slow or controlled release of the compound or agent.
  • Administering can also be performed, for example, once, a plurality of times, and/or over one or more extended periods.
  • a compound or an agent is administered orally, e.g., to a subject by ingestion.
  • the orally administered compound or agent is in an extended release or slow release formulation, or administered using a device for such slow or extended release.
  • the different therapeutic compounds can be administered either in the same formulation or in separate formulations, either
  • A“therapeutically effective amount” or a“therapeutically effective dose” of a drug or agent is an amount of a drug or an agent that, when administered to a subject will have the intended therapeutic effect.
  • the full therapeutic effect does not necessarily occur by administration of one dose, and may occur only after administration of a series of doses.
  • a therapeutically effective amount may be administered in one or more administrations.
  • the precise effective amount needed for a subject will depend upon, for example, the subject’s size, health and age, and the nature and extent of the condition being treated, such as cancer or MDS. The skilled worker can readily determine the effective amount for a given situation by routine experimentation.
  • each R A independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of R A taken together with another and the intervening atom(s) complete a carbocycle or heterocycle having from 4 to 8 atoms in the ring structure.
  • acyl is art-recognized and refers to a group represented by the general formula hydrocarbylC(O)-, preferably alkylC(O)-.
  • acylamino is art-recognized and refers to an amino group substituted with an acyl group and may be represented, for example, by the formula hydrocarbylC(0)NH-.
  • acyloxy is art-recognized and refers to a group represented by the general formula hydrocarbylC(0)0-, preferably alkylC(0)0-.
  • alkoxy refers to an alkyl group, preferably a lower alkyl group, having an oxygen attached thereto.
  • Representative alkoxy groups include methoxy, trifluoromethoxy, ethoxy, propoxy, tert-butoxy and the like.
  • alkoxyalkyl refers to an alkyl group substituted with an alkoxy group and may be represented by the general formula alkyl-O-alkyl.
  • alkenyl refers to an aliphatic group containing at least one double bond and is intended to include both "unsubstituted alkenyls" and “substituted alkenyls", the latter of which refers to alkenyl moieties having substituents replacing a hydrogen on one or more carbons of the alkenyl group. Such substituents may occur on one or more carbons that are included or not included in one or more double bonds. Moreover, such substituents include all those contemplated for alkyl groups, as discussed below, except where stability is prohibitive. For example, substitution of alkenyl groups by one or more alkyl, carbocyclyl, aryl, heterocyclyl, or heteroaryl groups is contemplated.
  • An“alkyl” group or“alkane” is a straight chained or branched non-aromatic hydrocarbon which is completely saturated. Typically, a straight chained or branched alkyl group has from 1 to about 20 carbon atoms, preferably from 1 to about 10 unless otherwise defined. Examples of straight chained and branched alkyl groups include methyl, ethyl, n- propyl, iso-propyl, n-butyl, sec-butyl, tert-butyl, pentyl, hexyl, pentyl and octyl. A C1-C 6 straight chained or branched alkyl group is also referred to as a "lower alkyl" group.
  • alkyl (or “lower alkyl) as used throughout the specification, examples, and claims is intended to include both “unsubstituted alkyls” and “substituted alkyls”, the latter of which refers to alkyl moieties having substituents replacing a hydrogen on one or more carbons of the hydrocarbon backbone.
  • substituents can include, for example, a halogen (e.g., fluoro), a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxy, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or
  • a halogen
  • the substituents on substituted alkyls are selected from C1- 6 alkyl, C3- 6 cycloalkyl, halogen, carbonyl, cyano, or hydroxyl. In more preferred embodiments, the substituents on substituted alkyls are selected from fluoro, carbonyl, cyano, or hydroxyl. It will be understood by those skilled in the art that the moieties substituted on the hydrocarbon chain can themselves be substituted, if appropriate.
  • the substituents of a substituted alkyl may include substituted and unsubstituted forms of amino, azido, imino, amido, phosphoryl (including phosphonate and phosphinate), sulfonyl (including sulfate, sulfonamido, sulfamoyl and sulfonate), and silyl groups, as well as ethers, alkylthios, carbonyls (including ketones, aldehydes, carboxylates, and esters), -CF3, -CN and the like. Exemplary substituted alkyls are described below.
  • Cycloalkyls can be further substituted with alkyls, alkenyls, alkoxys, alkylthios, aminoalkyls, carbonyl -substituted alkyls, -CF 3 , -CN, and the like.
  • Cx- y when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups that contain from x to y carbons in the chain.
  • the term“Cx- y alkyl” refers to substituted or unsubstituted saturated hydrocarbon groups, including straight-chain alkyl and branched-chain alkyl groups that contain from x to y carbons in the chain, including haloalkyl groups.
  • Preferred haloalkyl groups include trifluoromethyl, difluoromethyl, 2,2,2-trifluoroethyl, and pentafluoroethyl.
  • Co alkyl indicates a hydrogen where the group is in a terminal position, a bond if internal.
  • the terms“C2- y alkenyl” and“C2- y alkynyl” refer to substituted or unsubstituted unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double or triple bond respectively.
  • alkylamino refers to an amino group substituted with at least one alkyl group.
  • alkylthio refers to a thiol group substituted with an alkyl group and may be represented by the general formula alkylS-.
  • alkynyl refers to an aliphatic group containing at least one triple bond and is intended to include both "unsubstituted alkynyls" and “substituted alkynyls", the latter of which refers to alkynyl moieties having substituents replacing a hydrogen on one or more carbons of the alkynyl group. Such substituents may occur on one or more carbons that are included or not included in one or more triple bonds. Moreover, such substituents include all those contemplated for alkyl groups, as discussed above, except where stability is prohibitive. For example, substitution of alkynyl groups by one or more alkyl, carbocyclyl, aryl, heterocyclyl, or heteroaryl groups is contemplated.
  • amide refers to a group
  • each R A independently represent a hydrogen or hydrocarbyl group, or two R A are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • amine and“amino” are art-recognized and refer to both unsubstituted and substituted amines and salts thereof, e.g., a moiety that can be represented by
  • each R A independently represents a hydrogen or a hydrocarbyl group, or two R A are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • aminoalkyl refers to an alkyl group substituted with an amino group.
  • aralkyl refers to an alkyl group substituted with an aryl group.
  • aryl as used herein include substituted or unsubstituted single-ring aromatic groups in which each atom of the ring is carbon.
  • the ring is a 6- or 10- membered ring, more preferably a 6-membered ring.
  • aryl also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls.
  • Aryl groups include benzene, naphthalene, phenanthrene, phenol, aniline, and the like.
  • boron as used herein with respect to a substituent on an organic compound, is art-recognized and refers to a group -B(R A ) 2 , wherein each R A independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of R A taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • boronic ester or“boronate ester” as used herein is art-recognized and refers to a group -B(OR A ) 2 , wherein each R A independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of R A taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • each R A independently represent hydrogen or a hydrocarbyl group, such as an alkyl group, or both R A taken together with the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • carbocycle refers to a saturated or unsaturated ring in which each atom of the ring is carbon.
  • carbocycle includes both aromatic carbocycles and non-aromatic carbocycles.
  • Non-aromatic carbocycles include both cycloalkane rings, in which all carbon atoms are saturated, and cycloalkene rings, which contain at least one double bond.
  • Carbocycle includes 5-7 membered monocyclic and 8-12 membered bicyclic rings. Each ring of a bicyclic carbocycle may be selected from saturated, unsaturated and aromatic rings.
  • Carbocycle includes bicyclic molecules in which one, two or three or more atoms are shared between the two rings.
  • the term“fused carbocycle” refers to a bicyclic carbocycle in which each of the rings shares two adjacent atoms with the other ring.
  • Each ring of a fused carbocycle may be selected from saturated, unsaturated and aromatic rings.
  • an aromatic ring e.g., phenyl
  • an aromatic ring e.g., phenyl
  • a saturated or unsaturated ring e.g., cyclohexane, cyclopentane, or cyclohexene.
  • Any combination of saturated, unsaturated and aromatic bicyclic rings, as valence permits, is included in the definition of carbocyclic.
  • Exemplary“carbocycles” include cyclopentane, cyclohexane, bicyclo[2.2. l]heptane, l,5-cyclooctadiene, l,2,3,4-tetrahydronaphthalene, bicyclo[4.2.0]oct-3-ene, naphthalene and adamantane.
  • Exemplary fused carbocycles include decalin, naphthalene, l,2,3,4-tetrahydronaphthalene, bicyclo[4.2.0]octane, 4,5,6,7-tetrahydro- lH-indene and bicyclo[4. l.0]hept-3-ene.“Carbocycles” may be substituted at any one or more positions capable of bearing a hydrogen atom.
  • A“cycloalkyl” group is a cyclic hydrocarbon which is completely saturated.
  • Cycloalkyl includes monocyclic and bicyclic rings. Typically, a monocyclic cycloalkyl group has from 3 to about 10 carbon atoms, more typically 3 to 8 carbon atoms unless otherwise defined.
  • the second ring of a bicyclic cycloalkyl may be selected from saturated, unsaturated and aromatic rings. Cycloalkyl includes bicyclic molecules in which one, two or three or more atoms are shared between the two rings.
  • the term“fused cycloalkyl” refers to a bicyclic cycloalkyl in which each of the rings shares two adjacent atoms with the other ring.
  • the second ring of a fused bicyclic cycloalkyl may be selected from saturated, unsaturated and aromatic rings.
  • A“cycloalkenyl” group is a cyclic hydrocarbon containing one or more double bonds.
  • carbocyclylalkyl refers to an alkyl group substituted with a carbocycle group.
  • carbonate is art-recognized and refers to a group -0C02-R A , wherein R A represents a hydrocarbyl group.
  • diisulfide is art-recognized and refers to a group -S-S-R A , wherein R A represents a hydrocarbyl group.
  • ester refers to a group -C(0)0R A wherein R A represents a hydrocarbyl group.
  • ether refers to a hydrocarbyl group linked through an oxygen to another hydrocarbyl group. Accordingly, an ether substituent of a hydrocarbyl group may be hydrocarbyl-O-. Ethers may be either symmetrical or unsymmetrical.
  • ethers include, but are not limited to, heterocycle-O-heterocycle and aryl-O- heterocycle.
  • Ethers include“alkoxyalkyl” groups, which may be represented by the general formula alkyl-O-alkyl.
  • halo and“halogen” as used herein means halogen and includes chloro, fluoro, bromo, and iodo.
  • heteroalkyl and“heteroaralkyl”, as used herein, refers to an alkyl group substituted with a hetaryl group.
  • heteroalkyl refers to a saturated or unsaturated chain of carbon atoms and at least one heteroatom, wherein no two heteroatoms are adjacent.
  • heteroaryl and“hetaryl” include substituted or unsubstituted aromatic single ring structures, preferably 5- to 7-membered rings, more preferably 5- to 6-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms.
  • the terms“heteroaryl” and“hetaryl” also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is
  • heteroaromatic e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls.
  • Heteroaryl groups include, for example, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, pyrazole, pyridine, pyrazine, pyridazine, and pyrimidine, and the like.
  • heteroatom as used herein means an atom of any element other than carbon or hydrogen. Preferred heteroatoms are nitrogen, oxygen, and sulfur.
  • heterocyclyl refers to substituted or unsubstituted non-aromatic ring structures, preferably 3- to lO-membered rings, more preferably 3- to 7-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms.
  • heterocyclyl and“heterocyclic” also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heterocyclic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls.
  • Heterocyclyl groups include, for example, piperidine, piperazine, pyrrolidine, tetrahydropyran, tetrahydrofuran, morpholine, lactones, lactams, and the like.
  • heterocyclylalkyl refers to an alkyl group substituted with a heterocycle group.
  • Hydrocarbyl groups include, but are not limited to aryl, heteroaryl, carbocycle, heterocyclyl, alkyl, alkenyl, alkynyl, and combinations thereof.
  • hydroxyalkyl refers to an alkyl group substituted with a hydroxy group.
  • lower when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups where there are ten or fewer non-hydrogen atoms in the substituent, preferably six or fewer.
  • acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy substituents defined herein are respectively lower acyl, lower acyloxy, lower alkyl, lower alkenyl, lower alkynyl, or lower alkoxy, whether they appear alone or in combination with other substituents, such as in the recitations hydroxyalkyl and aralkyl (in which case, for example, the atoms within the aryl group are not counted when counting the carbon atoms in the alkyl substituent).
  • orthoester as used herein is art-recognized and refers to a group - C(OR A )3, wherein each R A independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of R A taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • phosphoester refers to a group -P(02)0H.
  • each ring of the polycycle contains from 3 to 10 atoms in the ring, preferably from 5 to 7.
  • selenium is equivalent to an ether, wherein the oxygen is replaced with a selenium.
  • selenoxide is art-recognized and refers to the group -Se(0)-R A , wherein R A represents a hydrocarbyl.
  • siloxane is art-recognized and refers to a group with an Si-O-Si linkage, such as the group -Si(R A )2-0-Si-(R A )3, wherein each R A independently represents hydrogen or hydrocarbyl, such as alkyl, or both R A taken together with the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • sil refers to a silicon moiety with three hydrocarbyl moieties attached thereto.
  • substitution refers to moieties having substituents replacing a hydrogen on one or more carbons of the backbone. It will be understood that“substitution” or“substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by
  • the term“substituted” is contemplated to include all permissible substituents of organic compounds.
  • the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds.
  • the permissible substituents can be one or more and the same or different for appropriate organic compounds.
  • the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms.
  • Substituents can include any substituents described herein, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxy, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety
  • the substituents on substituted alkyls are selected from Ci-6 alkyl, C3-6 cycloalkyl, halogen, carbonyl, cyano, or hydroxyl. In more preferred embodiments, the substituents on substituted alkyls are selected from fluoro, carbonyl, cyano, or hydroxyl. It will be understood by those skilled in the art that substituents can themselves be substituted, if appropriate. Unless specifically stated as“unsubstituted,” references to chemical moieties herein are understood to include substituted variants. For example, reference to an“aryl” group or moiety implicitly includes both substituted and unsubstituted variants.
  • sulfate is art-recognized and refers to the group -OSO3H, or a
  • each R A independently represents hydrogen or hydrocarbyl, such as alkyl, or both R A taken together with the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • sulfoxide is art-recognized and refers to the group -S(0)-R a , wherein R A represents a hydrocarbyl.
  • sulfonate is art-recognized and refers to the group SCbH, or a
  • sulfone is art-recognized and refers to the group -S(0)2-R A , wherein R A represents a hydrocarbyl.
  • thioalkyl refers to an alkyl group substituted with a thiol group.
  • thioester refers to a group -C(0)SR A or -SC(0)R A wherein R A represents a hydrocarbyl.
  • thioether is equivalent to an ether, wherein the oxygen is replaced with a sulfur.
  • each R A independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of R A taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
  • Protecting group refers to a group of atoms that, when attached to a reactive functional group in a molecule, mask, reduce or prevent the reactivity of the functional group. Typically, a protecting group may be selectively removed as desired during the course of a synthesis. Examples of protecting groups can be found in Greene and Wuts, Protective Groups in Organic Chemistry, 3 rd Ed., 1999, John Wiley & Sons, NY and Harrison et ah, Compendium of Synthetic Organic Methods, Vols. 1-8, 1971-1996, John Wiley & Sons, NY.
  • nitrogen protecting groups include, but are not limited to, formyl, acetyl, trifluoroacetyl, benzyl, benzyloxycarbonyl (“CBZ”), tert-butoxycarbonyl (“Boc”), trimethyl silyl (“TMS”), 2-trimethylsilyl-ethanesulfonyl (“TES”), trityl and substituted trityl groups, allyloxycarbonyl, 9-fluorenylmethyloxycarbonyl (“FMOC”), nitro- veratryloxycarbonyl (“NVOC”) and the like.
  • hydroxyl protecting groups include, but are not limited to, those where the hydroxyl group is either acylated (esterified) or alkylated such as benzyl and trityl ethers, as well as alkyl ethers, tetrahydropyranyl ethers, trialkylsilyl ethers (e.g., TMS or TIPS groups), glycol ethers, such as ethylene glycol and propylene glycol derivatives and allyl ethers.
  • module includes the inhibition or suppression of a function or activity (such as cell proliferation) as well as the enhancement of a function or activity.
  • compositions, excipients, adjuvants, polymers and other materials and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
  • “Pharmaceutically acceptable salt” or“salt” is used herein to refer to an acid addition salt or a basic addition salt which is suitable for or compatible with the treatment of patients.
  • pharmaceutically acceptable acid addition salt as used herein means any non-toxic organic or inorganic salt of any base compounds represented by Formula I.
  • Illustrative inorganic acids which form suitable salts include hydrochloric, hydrobromic, sulfuric and phosphoric acids, as well as metal salts such as sodium monohydrogen orthophosphate and potassium hydrogen sulfate.
  • Illustrative organic acids that form suitable salts include mono-, di-, and tricarboxylic acids such as glycolic, lactic, pyruvic, malonic, succinic, glutaric, fumaric, malic, tartaric, citric, ascorbic, maleic, benzoic, phenylacetic, cinnamic and salicylic acids, as well as sulfonic acids such as p-toluene sulfonic and methanesulfonic acids.
  • Either the mono or di-acid salts can be formed, and such salts may exist in either a hydrated, solvated or substantially anhydrous form.
  • the acid addition salts of compounds of Formula I are more soluble in water and various hydrophilic organic solvents, and generally demonstrate higher melting points in comparison to their free base forms. The selection of the appropriate salt will be known to one skilled in the art.
  • non-pharmaceutically acceptable salts e.g., oxalates
  • oxalates may be used, for example, in the isolation of compounds of Formula I for laboratory use, or for subsequent conversion to a pharmaceutically acceptable acid addition salt.
  • pharmaceutically acceptable basic addition salt means any non-toxic organic or inorganic base addition salt of any acid compounds represented by Formula I or any of their intermediates.
  • Illustrative inorganic bases which form suitable salts include lithium, sodium, potassium, calcium, magnesium, or barium hydroxide.
  • Illustrative organic bases which form suitable salts include aliphatic, alicyclic, or aromatic organic amines such as methylamine, trimethylamine and picoline or ammonia. The selection of the appropriate salt will be known to a person skilled in the art.
  • stereogenic center in their structure.
  • This stereogenic center may be present in a R or a S configuration, said R and S notation is used in correspondence with the rules described in Pure Appl. Chem. (1976), 45, 11-30.
  • the disclosure contemplates all stereoisomeric forms such as enantiomeric and diastereoisomeric forms of the compounds, salts, prodrugs or mixtures thereof (including all possible mixtures of stereoisomers). See, e.g., WO 01/062726.
  • Prodrug or“pharmaceutically acceptable prodrug” refers to a compound that is metabolized, for example hydrolyzed or oxidized, in the host after administration to form the compound of the present disclosure (e.g., compounds of formula I).
  • Typical examples of prodrugs include compounds that have biologically labile or cleavable (protecting) groups on a functional moiety of the active compound.
  • Prodrugs include compounds that can be oxidized, reduced, aminated, deaminated, hydroxylated, dehydroxylated, hydrolyzed, dehydrolyzed, alkylated, dealkylated, acylated, deacylated, phosphorylated, or
  • prodrugs using ester or phosphoramidate as biologically labile or cleavable (protecting) groups are disclosed in U.S. Patents 6,875,751, 7,585,851, and 7,964,580, the disclosures of which are incorporated herein by reference.
  • the prodrugs of this disclosure are metabolized to produce a compound of Formula I.
  • the present disclosure includes within its scope, prodrugs of the compounds described herein. Conventional procedures for the selection and preparation of suitable prodrugs are described, for example, in“Design of Prodrugs” Ed. H. Bundgaard, Elsevier, 1985.
  • phrases“pharmaceutically acceptable carrier” as used herein means a
  • composition or vehicle such as a liquid or solid filter, diluent, excipient, solvent or encapsulating material useful for formulating a drug for medicinal or therapeutic use.
  • log of solubility is used in the art to quantify the aqueous solubility of a compound.
  • the aqueous solubility of a compound significantly affects its absorption and distribution characteristics. A low solubility often goes along with a poor absorption.
  • LogS value is a unit stripped logarithm (base 10) of the solubility measured in mol/liter.
  • High Resolution Mass Spectrometry was obtained on a Waters LCT Premier XE Time of Flight LC-MS. 3 ⁇ 4 NMR, 13 C NMR spectra were obtained on AV-300, ARX-400, ARX-500 or Avance-500 spectrometers. The chemical shifts are reported in parts per million (ppm, d). The coupling constants are reported in Hertz (Hz) and the resonance patterns are reported with the following notations: br (broad), s (singlet), d (double), t (triplet), q (quartet) and m (multiplet). High-resolution mass spectra were measured on a time-of-flight LC-MS.
  • Thin- layer chromatography was carried out using precoated silica gel sheets (Merck 60 F254). Visual detection was performed with ultraviolet light (short wave and long wave), p- anisaldehyde stain, and potassium permanganate stain.
  • Symmetrical metformin analogues (002 and 006): A mixture of sodium
  • Asymmetrical analogues (005): A mixture of sodium dicyanoamide (1.335 g, 0.015 mol) and pyrrolidine hydrochloride or dimethylamine hydrochloride (0.015 mol) in xylenes (40 mL) was refluxed for 12 h. After it was cooled to 21 °C, the reaction mixture was evaporated to dryness under reduced pressure. The residue was crystallized from MeOH to get the pure alkyldicyandiamide product as an intermediate.
  • Example 2 Metformin analogues alone and combined with immune checkpoint inhibitors suppress TNBC progression in vivo .
  • analogue 005 was tested for antitumor effects using human TNBC xenografts in nude mouse models in vivo as compared with that of metformin. Results show that the analogue significantly outperforms metformin in blocking TNBC progression (FIG. 1A).
  • a pilot study was conducted to assess antitumor activity of analogue 006 alone or combined with an anti-PD-Ll immune checkpoint inhibitor.
  • Murine mammary carcinoma 4T1 TNBC cells were implanted in immune-competent syngeneic BALB/c mice (FIG. IB).
  • Analogue 006 alone or with anti-PD-Ll suppresses TNBCs in vivo as compared to control, and analogue 006 combined with anti-PD-Ll antibody therapy exhibits greater suppression of 4T1 tumor growth than that of anti-PD-Ll antibody given alone (P ⁇ 0.00l).
  • Example 3 CD8 + T-cells and new biguanides.
  • Metformins are reported to suppress tumor growth in vivo in part by modulating CD8 + T cells (7).
  • the effect of biguanide 006 was assessed on the number of CD8 + T-cells present in mouse tumors harvested at day 10 after treatment.
  • Cells were isolated and processed from primary 4T1 tumors by established methods, then stained with cell surface biomarkers and analyzed by mass cytometry (cyTOF).
  • FIG. 2A shows an apparent increase in the occurance of CD8 + T-cells in 4T1 tumors of mice treated with biguanide 006 as compared to that of tumors treated with vehicle.
  • intratumoral T-cells is an independent predictor of improved survival (19,20) and has also been associated with a Thl cytokine signature in malignant CD8+ T- cells stimulated by cancer cell antigens, with increased secretion of IFNy, IL-2 and TNFa.
  • Example 4 Myeloid-derived suppressor cells and new biguanides.
  • Tumors generate a suppressive microenvironment to evade the immune response by various mechanisms, including recruitment of regulatory T cells (Tregs) and myeloid-derived suppressor cells (MDSC) (12). These cell subtypes have emerged as key contributors to tumor immune suppression, tumor angiogenesis, drug resistance and promotion of tumor metastases (13, 14). In malignancy, myeloid cell differentiation into mature macrophage, dendritic cells and granulocytes is often diverted into pathways that favor the differentiation of pathological MDSC.
  • Tregs regulatory T cells
  • MDSC myeloid-derived suppressor cells
  • FIGs. 3A-3B show the results of an experiment that illustrates the G-MDSC subpopulations in tumors of mice, following treatment protocols described in Example 2. Mice were sacrificed at day 10 post- treatment, with tumors and spleens harvested.
  • tissues were collected following approved guidelines, with single-cell suspensions generated using a tumor dissociation kit. Tissues were minced into 2-mm pieces and mixed with recommended enzymes as per standard protocols (21). Single cell suspensions were stained using a cocktail of antibodies such as CD1 ltELyseG ⁇ LyOC 10 for MDSCs, FoxP3 for Tregs, and others, including previous staining with cisplatin to discriminate live and dead cells. Analyses were then done by mass cytometry (cyTOF). G-MDSCs were stained and analyzed by cyTOF to discriminate between immune cell subpopulations, with G-MDSC defined as CD45 + CDl lb + Ly6G hi cells.
  • cyTOF mass cytometry
  • FIG. 3A shows a graphic representation of a viSNE clustering analysis
  • Cytobank defines populations of distinct immune cells from tumors and spleens. Equal event sampling using 10,000 events per individual sample was used. Cellular phenotypes were assigned to the viSNE plot based on distribution and expression characteristics using phenotypic markers: B cells (CDl9 + CD220 + ), CD3 + CD4 + and CD3 + CD8 + TILs, Dendritic Cells (DC, CDl lc + MHCII + ), Natural Killer cells (NK, CD335 + CD161 + ), G-MDSC
  • Example 5 Bone marrow isolates from breast cancer patients.
  • the immunosuppressive tumour network myeloid-derived suppressor cells, regulatory T cells and natural killer T cells.

Abstract

The present disclosure provides compositions comprising a biguanide compound and an immune therapy. Also provided are methods for treating cancer comprising conjoint administration of a biguanide compound and an immunotherapy.

Description

BIGUANIDE COMPOSITIONS AND METHODS RELATED THERETO
STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH OR
DEVELOPMENT
This invention was made with Government support under CA176337, awarded by the National Institutes of Health. The Government has certain rights in the invention.
REFERENCE TO RELATED APPLICATIONS
This application claims the benefit of U.S. Provisional Patent Application No.
62/592,148, filed November 29, 2017, the contents of which are fully incorporated by reference herein in their entirety.
BACKGROUND
Metformin analogues have shown some potential as cancer treatments. For example, U.S. Patent Pub. No. 2015/0158832, which is incorporated by reference herein in its entirety, provides a number of such analogues. Immune checkpoint inhibitors such as anti-PDl, anti- PD-L1, anti-CTLA-4 and anti-CD47 antibodies have also shown antitumor efficacy as single agents in some patients afflicted with melanoma, non-small cell lung cancer, renal cell carcinoma as well as bladder, gynecologic and breast cancers and a number of other malignancies. Extending the benefits of immunotherapies to greater numbers of patients afflicted with cancer is an important clinical goal going forward.
SUMMARY OF THE INVENTION
In certain aspects, the present disclosure provides compounds and compositions of formula I and pharmaceutically acceptable salts thereof:
Figure imgf000002_0001
wherein:
R1 is H, alkyl or alkoxy;
R2 is H, alkyl or alkoxy; or R1 and R2, taken together, complete a 5-10 member heterocycle; R3 is H, alkyl or alkoxy; and R4 is H, alkyl or alkoxy; or R3 and R4, taken together, complete a 5-10 member heterocycle.
In certain aspects, the present disclosure provides a pharmaceutical composition comprising a compound of formula A, or a pharmaceutically acceptable salt thereof, and an immune therapy:
Figure imgf000003_0001
wherein:
L1 and L2 are independently a bond or -NH-C(NH)-;
RA is -NR'R2, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; R1 and R2 taken together with the N that separate them complete a heterocycle;
RB is -NR3R4, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; or R3 and R4 taken together with the N that separate them complete a heterocycle;
R1 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R2 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R1 and R2 taken together with the N that separates them complete a heterocycle;
R3 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R4 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R3 and R4 taken together with the N that separates them complete a heterocycle;
Rc is hydrogen or C1-C5 alkyl; and
R5 is hydrogen, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl.
In certain embodiments, the compound of formula A is a compound of formula I:
Figure imgf000003_0002
In certain embodiments, R1 is H, alkyl or alkoxy; R2 is H, alkyl or alkoxy; or R1 and R2, taken together, complete a 5-10 member heterocycle; R3 is H, alkyl or alkoxy; and R4 is H, alkyl or alkoxy; or R3 and R4, taken together, complete a 5-10 member heterocycle. In certain embodiments, if R1 and R2 are methyl, then R3 and R4 are not both hydrogen.
In certain embodiments, R1 is methoxy and R2 is methyl.
In certain embodiments, R1 is propyl and R2 is methyl.
In certain embodiments, R3 and R4 are H.
In certain embodiments, the compound is of formula la, or a pharmaceutically acceptable salt thereof:
Figure imgf000004_0001
wherein:
m is 0, 1, 2, or 3; and
n is 0, 1, 2, or 3.
In certain embodiments, m and n are both 1.
In certain embodiments, the immune therapy is an immune checkpoint inhibitor, an indoleamine 2,3 -di oxygenase inhibitor, or an adoptive cell transfer therapy.
In certain embodiments, the immune therapy is an immune checkpoint inhibitor selected from anti-PD-l, anti-PD-Ll, or anti-CTLA-4.
In certain embodiments, the immune checkpoint inhibitor is nivolumab,
pembrolizumab, atezolizumab, durvalumab, avelumab, or ipilumumab.
In certain aspects, the present disclosure provides methods of treating cancer, comprising administering a compound or composition of formula I to a patient in need thereof.
In certain embodiments, the present disclosure is directed to a method for treating a cancer, comprising administering a composition as described herein to a patient in need thereof.
In certain embodiments, the present disclosure is directed to a method for treating a cancer, comprising administering conjointly a compound of formula A, or a pharmaceutically acceptable salt thereof, and an immune therapy:
Figure imgf000005_0001
wherein:
L1 and L2 are independently a bond or -NH-C(NH)-;
RA is -NR'R2, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; R1 and R2 taken together with the N that separate them complete a heterocycle;
RB is -NR3R4, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; or R3 and R4 taken together with the N that separate them complete a heterocycle;
R1 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R2 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R1 and R2 taken together with the N that separates them complete a heterocycle;
R3 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R4 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R3 and R4 taken together with the N that separates them complete a heterocycle;
Rc is hydrogen or C1-C5 alkyl; and
R5 is hydrogen, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl.
In certain embodiments, the compound of formula A is a compound of formula I:
Figure imgf000005_0002
In certain embodiments, R1 is H, alkyl or alkoxy; R2 is H, alkyl or alkoxy; or R1 and R2, taken together, complete a 5-10 member heterocycle; R3 is H, alkyl or alkoxy; and R4 is H, alkyl or alkoxy; or R3 and R4, taken together, complete a 5-10 member heterocycle.
In certain embodiments, if R1 and R2 are methyl, then R3 and R4 are not both hydrogen.
In certain embodiments, R1 is methoxy and R2 is methyl.
In certain embodiments, R1 is propyl and R2 is methyl.
In certain embodiments, R3 and R4 are H. In certain embodiments, the compound is of formula la, or a pharmaceutically acceptable salt thereof:
Figure imgf000006_0001
wherein:
m is 0, 1, 2, or 3; and
n is 0, 1, 2, or 3.
In certain embodiments, m and n are both 1.
In certain embodiments, the immune therapy is an immune checkpoint inhibitor, an indoleamine 2,3 -di oxygenase inhibitor, or an adoptive cell transfer therapy.
In certain embodiments, the immune therapy is an immune checkpoint inhibitor selected from anti-PD-l, anti-PD-Ll, anti-CTLA-4 or anti-CD47.
In certain embodiments, the immune checkpoint inhibitor is nivolumab,
pembrolizumab, atezolizumab, durvalumab, avelumab, or ipilumumab.
In certain embodiments, the cancer is leukemia, lymphoma, Hodgkins lymphoma, colon cancer, breast cancer, prostate cancer, lung cancer, skin cancer, liver cancer, pancreatic cancer, ovarian cancer, bladder cancer, kidney cancer, bile duct cancer, esophageal cancer, cervical cancer, endometrial cancer, melanoma, head and neck cancer, brain cancer, glioma, neuroblastoma, osteosarcoma, chondrosarcoma, gastric carcinoma, glioma, mesothelioma, Kaposi sarcoma, liposarcoma, synovial sarcoma, or Wilm’s tumor.
In certain embodiments, the cancer is melanoma, non-small cell lung cancer, renal cell carcinoma, bladder cancer, triple-negative breast cancer, or a gynecologic cancer such as endometrial, cervical, or ovarian cancer.
In certain embodiments, the cancer is breast cancer, such as triple-negative breast cancer.
BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1A shows inhibition of human MDA-MB-231 tumor xenograft progression by metformin analogue 005. TNBC subcutaneous xenografts are used with 5 mice/group.
Metformin (250 mg/kg), analogue 005 (50 mg/kg) or control were given Qd by oral gavage after tumors were 50-75 mm3. Antitumor effects of analogue 005 exceeded those of metformin or controls (P<0.00l). Of note, mouse body weights were not significantly different from controls in the analogue group, suggesting little toxicity in vivo.
FIG. IB shows suppression of 4T1 TNBC xenograft progression in vivo in syngeneic, immune-competent BALB/c mouse models. B ALB/c female mice (6-7 wk old) were injected in the flanks with 1 x 105 4T1 cells s.c. using established methods. Mice were randomized when tumor volumes were 200-250 mm3. For treatment, mice were divided into groups: (a) vehicle control (CON), (b) metformin analogue 006 (50 mg/kg/day by oral gavage) (006), (c) anti-PD-Ll antibody (Biolegend anti-CD274/B7-Hl/PD-Ll clone 10F.9G2, 100 pg/mouse IP diluted in PBS, Q3 days) (PD-L1) and (d) dual treatment with both 006 and anti-PD-Ll (006 + PD-L1). Tumor sizes were recorded every 2-3 days; mice were weighed twice weekly. Analogue 006 alone or with anti-PD-Ll suppresses TNBC progression in vivo versus controls (*P <0.001, t-test). Studies used 5 mice/group. Of note, dual treatment with 006 + anti-PD-Ll also shows a significantly greater effect at suppressing 4T1 TNBC growth than that of anti- PD-Ll alone. .
FIG 2A shows the effects of biguanide 006 on CD8+ tumor-infiltrating lymphocyte (TIL) populations in vivo. Mice were sacrificed at day 10 post-treatment (N=3), with tumor cell populations processed and analyzed by cyTOF. FIG. 2A. Fold change in CD8+ T-cell infiltration in tumors after treatment with metformin analogue 006 relative to the vehicle- treated control group.
FIGs. 2B and 2C show increased expression of biomarkers for CD8+-TIL population activation. Single cell suspensions were isolated from 4T1 tumors grown in BALB/c mice and stained with different antibodies against cell surface, nuclear and secreted proteins. After staining, cell suspensions were fixed, processed and subjected to mass cytometry. Figure panels show CD8+ T-cell expression of different activation markers following treatments: FIG 2B: Interferon gamma (IFNy), FIG. 2C: proliferation marker Ki-67.
FIGs. 3A and 3B show that combination therapy with biguanide 006 and anti-PD-Ll antibody results in an apparent decrease in the expansion of G-MDSCs derived from tumors of BALB/c mice with 4T1 breast tumor implants. FIG. 3A shows a graphic representation of a viSNE clustering analysis using Cytobank that defines populations of distinct immune cells from tumors and spleens. Equal event sampling using 10,000 events per individual sample was used. Cellular phenotypes were assigned to the viSNE plot based on distribution and expression characteristics using phenotypic markers: B cells (CDl9+CD220+), CD3+CD4+ and CD3+CD8+ TILs, Dendritic Cells (DC, CD1 lc+MHCII+), Natural Killer cells (NK, CD335+CD161+), G-MDSC (CD 1 l b_Ly6GhiLy6Cl0") M-MDSC (CD 1 l b_Ly6ChiLy6Gl0"). Expression of G-MDSC (CD1 lb+ Ly6G+) in the gated CD45+ cells from tumors were measured by mass cytometry. Representative plots are shown in FIG. 3B, N=5.
FIG. 3C shows a mass cytometry gating strategy using a Helios cyTOF platform (representative example). The sequential gating strategy for analysis of spleen and tumor cell subsets is shown. Dead cell events and CyTOF calibration beads were excluded before gating on CD45+ leukocytes. Single cell events were identified using Iridium-Intercalator according to manufacturer’s protocol. Distinct immune cell subsets were further analyzed for differences in functional marker expression, CD3+CD4 and CD3+CD8+ lymphocytes, granulocytic myeloid suppressor cells (G-MDSC, CD1 lb+Ly6GhiLy6Clow), monocytic myeloid suppressor cells (M-MDSC CD1 lb+ Ly6ChiLy6Glow), regulatory dendritic cells (rDCs - CD 11 c+CD 11 C-MHCII+), myeloid dendritic cells (mDCs - CD1 lc+ MHCII+), macrophages (Macro, CD1 lb+, F4/80+) and Tregs among others (CD4+CD25+ FoxP3+). Panel shows cyTOF data from a spleen sample experiment. Plots include concatenated data from one experiment (n = 5 mice).
FIG. 4 shows that biguanide 006 inhibits expansion of human myeloid derived suppressor cells (MDSC) derived from bone marrow of breast cancer patients. Bone marrow cells were incubated in the presence of GM-CSF and IL-6 for 6 days in RPMI medium + 15% FBS in the presence of vehicle or 1 mM biguanide 006. After 6 days cells were subjected to flow cytometry as described before (1,2). The graph shows the total number of MDSC (CD45+CD3-Cdl9-CDl9-CD20-Cd56-) after expansion as described before (see 14- -21).
PET ATT, ED DESCRIPTION OF TTTF INVENTION
The present disclosure provides compositions of metformin and analogues with immune checkpoint inhibitors, and related methods of treatment. Metformin analogues enhance the therapeutic benefit of immune checkpoint inhibitors in triple-negative breast cancer as well as in other malignancies. Metformin analogues block the expansion and activation of myeloid-derived suppressor cells that would otherwise allow tumors to escape immune surveillance and attack. In addition, metformin analogues impact the trafficking and activity of other immune cells such as CD8-positive T-cells and potentially subsets of tumor- associated macrophages and dendritic cell subpopulations.. The antitumor effects elicited by these new metformin analogues and their interactions with immune checkpoint inhibitors are expected to boost antitumor activity of immune checkpoint inhibitors and address an unmet clinical need.
Metformin belongs to the biguanide class of pharmaceuticals and exhibits modest activity as a single agent against triple-negative breast cancer (TNBC) in preclinical and early clinical reports (1-3). Treatment of diabetic patients with metformin, but not other antidiabetes drugs, is associated with a 30-40% reduction in the incidence of cancer (4-6); yet the underlying mechanism of these outcomes is poorly understood. Emerging evidence suggests that the reported antitumor activity of metformin may be in part immune-mediated (7).
Both anti -PD- 1 and anti-PD-Ll treatments, as well as a number of other immune checkpoint inhibitors, show promising responses for a fraction of triple-negative breast cancer (TNBC) patients, yet significant progress is urgently needed to achieve objective responses in the majority of those diagnosed with TNBC (8, 9). Most patients do not derive benefits from anti-PD-Ll treatment alone and a combination therapy is needed to provide synergism and enhance response rates to current immune-based therapies.
The compositions and methods of the present disclosure seek to more effectively harness the immune response and, ultimately, provide a new treatment option for TNBC patients. The metformin analogues shown in the following scheme were prepared and their IC50S determined based on in vitro assays of MDA-MB-231 human TNBC cell proliferation over a range of doses using established methods (27, 28).
HH NH -HO
R-NANANH2
Vg
Figure imgf000009_0001
Table 1 : ICso against MDA-MB-231
Figure imgf000010_0001
The observed antitumor effects of these biguanides may be a result of direct AMPK-cell signaling modulation in addition to indirect immunomodulatory effects via trafficking of CD8+ TILs and inhibition of MDSC expansion and activity.
Pharmaceutical Compositions
The compositions and methods of the present invention may be utilized to treat an individual in need thereof. In certain embodiments, the individual is a mammal such as a human, or a non-human mammal. When administered to an animal, such as a human, the composition or the compound is preferably administered as a pharmaceutical composition comprising, for example, a compound of the invention and a pharmaceutically acceptable carrier. Pharmaceutically acceptable carriers are well known in the art and include, for example, aqueous solutions such as water or physiologically buffered saline or other solvents or vehicles such as glycols, glycerol, oils such as olive oil, or injectable organic esters. In preferred embodiments, when such pharmaceutical compositions are for human
administration, particularly for invasive routes of administration (i.e., routes, such as injection or implantation, that circumvent transport or diffusion through an epithelial barrier), the aqueous solution is pyrogen-free, or substantially pyrogen-free. The excipients can be chosen, for example, to effect delayed release of an agent or to selectively target one or more cells, tissues or organs. The pharmaceutical composition can be in dosage unit form such as tablet, capsule (including sprinkle capsule and gelatin capsule), granule, lyophile for reconstitution, powder, solution, syrup, suppository, injection or the like. The composition can also be present in a transdermal delivery system, e.g., a skin patch. The composition can also be present in a solution suitable for topical administration, such as a lotion, cream, or ointment.
A pharmaceutically acceptable carrier can contain physiologically acceptable agents that act, for example, to stabilize, increase solubility or to increase the absorption of a compound such as a compound of the invention. Such physiologically acceptable agents include, for example, carbohydrates, such as glucose, sucrose or dextrans, antioxidants, such as ascorbic acid or glutathione, chelating agents, low molecular weight proteins or other stabilizers or excipients. The choice of a pharmaceutically acceptable carrier, including a physiologically acceptable agent, depends, for example, on the route of administration of the composition. The preparation or pharmaceutical composition can be a selfemulsifying drug delivery system or a selfmicroemulsifying drug delivery system. The pharmaceutical composition (preparation) also can be a liposome or other polymer matrix, which can have incorporated therein, for example, a compound of the invention. Liposomes, for example, which comprise phospholipids or other lipids, are nontoxic, physiologically acceptable and metabolizable carriers that are relatively simple to make and administer.
The phrase "pharmaceutically acceptable" is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
The phrase "pharmaceutically acceptable carrier" as used herein means a
pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material. Each carrier must be "acceptable" in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient. Some examples of materials which can serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16) pyrogen-free water; (17) isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) phosphate buffer solutions; and (21) other non-toxic compatible substances employed in pharmaceutical formulations.
A pharmaceutical composition (preparation) can be administered to a subject by any of a number of routes of administration including, for example, orally (for example, drenches as in aqueous or non-aqueous solutions or suspensions, tablets, capsules (including sprinkle capsules and gelatin capsules), boluses, powders, granules, pastes for application to the tongue); absorption through the oral mucosa (e.g., sublingually); subcutaneously;
transdermally (for example as a patch applied to the skin); and topically (for example, as a cream, ointment or spray applied to the skin). The compound may also be formulated for inhalation. In certain embodiments, a compound may be simply dissolved or suspended in sterile water. Details of appropriate routes of administration and compositions suitable for same can be found in, for example, U.S. Pat. Nos. 6,110,973, 5,763,493, 5,731,000,
5,541,231, 5,427,798, 5,358,970 and 4,172,896, as well as in patents cited therein.
The formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy. The amount of active ingredient which can be combined with a carrier material to produce a single dosage form will vary depending upon the host being treated, the particular mode of administration. The amount of active ingredient that can be combined with a carrier material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect. Generally, out of one hundred percent, this amount will range from about 1 percent to about ninety-nine percent of active ingredient, preferably from about 5 percent to about 70 percent, most preferably from about 10 percent to about 30 percent.
Methods of preparing these formulations or compositions include the step of bringing into association an active compound, such as a compound of the invention, with the carrier and, optionally, one or more accessory ingredients. In general, the formulations are prepared by uniformly and intimately bringing into association a compound of the present invention with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
Formulations of the invention suitable for oral administration may be in the form of capsules (including sprinkle capsules and gelatin capsules), cachets, pills, tablets, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth), lyophile, powders, granules, or as a solution or a suspension in an aqueous or non-aqueous liquid, or as an oil-in- water or water-in-oil liquid emulsion, or as an elixir or syrup, or as pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as mouth washes and the like, each containing a predetermined amount of a compound of the present invention as an active ingredient. Compositions or compounds may also be administered as a bolus, electuary or paste.
To prepare solid dosage forms for oral administration (capsules (including sprinkle capsules and gelatin capsules), tablets, pills, dragees, powders, granules and the like), the active ingredient is mixed with one or more pharmaceutically acceptable carriers, such as sodium citrate or dicalcium phosphate, and/or any of the following: (1) fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; (2) binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; (3) humectants, such as glycerol; (4) disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate; (5) solution retarding agents, such as paraffin; (6) absorption accelerators, such as quaternary ammonium compounds; (7) wetting agents, such as, for example, cetyl alcohol and glycerol monostearate; (8) absorbents, such as kaolin and bentonite clay; (9) lubricants, such a talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, and mixtures thereof; (10) complexing agents, such as, modified and unmodified cyclodextrins; and (11) coloring agents. In the case of capsules (including sprinkle capsules and gelatin capsules), tablets and pills, the pharmaceutical compositions may also comprise buffering agents. Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugars, as well as high molecular weight polyethylene glycols and the like.
A tablet may be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets may be prepared using binder (for example, gelatin or hydroxypropylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (for example, sodium starch glycolate or cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent. Molded tablets may be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
The tablets, and other solid dosage forms of the pharmaceutical compositions, such as dragees, capsules (including sprinkle capsules and gelatin capsules), pills and granules, may optionally be scored or prepared with coatings and shells, such as enteric coatings and other coatings well known in the pharmaceutical-formulating art. They may also be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxypropylmethyl cellulose in varying proportions to provide the desired release profile, other polymer matrices, liposomes and/or microspheres. They may be sterilized by, for example, filtration through a bacteria-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions that can be dissolved in sterile water, or some other sterile injectable medium immediately before use. These compositions may also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. The active ingredient can also be in micro- encapsulated form, if appropriate, with one or more of the above-described excipients.
Liquid dosage forms useful for oral administration include pharmaceutically acceptable emulsions, lyophiles for reconstitution, microemulsions, solutions, suspensions, syrups and elixirs. In addition to the active ingredient, the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, cyclodextrins and derivatives thereof, solubilizing agents and emulsifiers, such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1, 3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents.
Suspensions, in addition to the active compounds, may contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar-agar and tragacanth, and mixtures thereof.
Dosage forms for the topical or transdermal administration include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants. The active compound may be mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that may be required.
The ointments, pastes, creams and gels may contain, in addition to an active compound, excipients, such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
Powders and sprays can contain, in addition to an active compound, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances. Sprays can additionally contain customary propellants, such as chlorofluorohydrocarbons and volatile unsubstituted hydrocarbons, such as butane and propane.
Transdermal patches have the added advantage of providing controlled delivery of a compound of the present invention to the body. Such dosage forms can be made by dissolving or dispersing the active compound in the proper medium. Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate of such flux can be controlled by either providing a rate controlling membrane or dispersing the compound in a polymer matrix or gel.
The phrases "parenteral administration" and "administered parenterally" as used herein means modes of administration other than enteral and topical administration, usually by injection, and includes, without limitation, intravenous, intraocular (such as intravitreal), intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal and intrasternal injection and infusion. Pharmaceutical
compositions suitable for parenteral administration comprise one or more active compounds in combination with one or more pharmaceutically acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents.
Examples of suitable aqueous and nonaqueous carriers that may be employed in the pharmaceutical compositions of the invention include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate. Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants. These compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents that delay absorption such as aluminum monostearate and gelatin.
In some cases, in order to prolong the effect of a drug, it is desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This may be
accomplished by the use of a liquid suspension of crystalline or amorphous material having poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution, which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle.
Injectable depot forms are made by forming microencapsulated matrices of the subject compounds in biodegradable polymers such as polylactide-polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular polymer employed, the rate of drug release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly (anhydrides). Depot injectable formulations are also prepared by entrapping the drug in liposomes or microemulsions that are compatible with body tissue.
For use in the methods of this invention, active compounds can be given per se or as a pharmaceutical composition containing, for example, 0.1 to 99.5% (more preferably, 0.5 to 90%) of active ingredient in combination with a pharmaceutically acceptable carrier.
Methods of introduction may also be provided by rechargeable or biodegradable devices. Various slow release polymeric devices have been developed and tested in vivo in recent years for the controlled delivery of drugs, including proteinaceous biopharmaceuticals. A variety of biocompatible polymers (including hydrogels), including both biodegradable and non-degradable polymers, can be used to form an implant for the sustained release of a compound at a particular target site.
Actual dosage levels of the active ingredients in the pharmaceutical compositions may be varied so as to obtain an amount of the active ingredient that is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of
administration, without being toxic to the patient. The selected dosage level will depend upon a variety of factors including the activity of the particular compound or combination of compounds employed, or the ester, salt or amide thereof, the route of administration, the time of administration, the rate of excretion of the particular compound(s) being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular compound(s) employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
A physician or veterinarian having ordinary skill in the art can readily determine and prescribe the therapeutically effective amount of the pharmaceutical composition required. For example, the physician or veterinarian could start doses of the pharmaceutical composition or compound at levels lower than that required in order to achieve the desired therapeutic effect and gradually increase the dosage until the desired effect is achieved. By “therapeutically effective amount” is meant the concentration of a compound that is sufficient to elicit the desired therapeutic effect. It is generally understood that the effective amount of the compound will vary according to the weight, sex, age, and medical history of the subject. Other factors which influence the effective amount may include, but are not limited to, the severity of the patient's condition, the disorder being treated, the stability of the compound, and, if desired, another type of therapeutic agent being administered with the compound of the invention. A larger total dose can be delivered by multiple administrations of the agent. Methods to determine efficacy and dosage are known to those skilled in the art (Isselbacher et al. (1996) Harrison’s Principles of Internal Medicine 13 ed., 1814-1882, herein incorporated by reference).
In general, a suitable daily dose of an active compound used in the compositions and methods of the invention will be that amount of the compound that is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above.
If desired, the effective daily dose of the active compound may be administered as one, two, three, four, five, six or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms. In certain embodiments of the present invention, the active compound may be administered two or three times daily. In preferred embodiments, the active compound will be administered once daily. The patient receiving this treatment is any animal in need, including primates, in particular humans; and other mammals such as equines, cattle, swine, sheep, cats, and dogs; poultry; and pets in general.
In certain embodiments, compounds of the invention may be used alone or conjointly administered with another type of therapeutic agent.
The present disclosure includes the use of pharmaceutically acceptable salts of compounds of the invention in the compositions and methods of the present invention. In certain embodiments, contemplated salts of the invention include, but are not limited to, alkyl, dialkyl, trialkyl or tetra-alkyl ammonium salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, L-arginine, benenthamine, benzathine, betaine, calcium hydroxide, choline, deanol, diethanolamine, diethylamine, 2- (diethylamino)ethanol, ethanolamine, ethylenediamine, N-methylglucamine, hydrabamine, lH-imidazole, lithium, L-lysine, magnesium, 4-(2-hydroxyethyl)morpholine, piperazine, potassium, 1 -(2-hydroxy ethyljpyrrolidine, sodium, triethanolamine, tromethamine, and zinc salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, Na, Ca, K, Mg, Zn or other metal salts. In certain embodiments, contemplated salts of the invention include, but are not limited to, l-hydroxy-2-naphthoic acid, 2,2-dichloroacetic acid, 2-hydroxyethanesulfonic acid, 2-oxoglutaric acid, 4-acetamidobenzoic acid, 4-aminosalicylic acid, acetic acid, adipic acid, l-ascorbic acid, l-aspartic acid, benzenesulfonic acid, benzoic acid, (+)-camphoric acid, (+)-camphor-lO-sulfonic acid, capric acid (decanoic acid), caproic acid (hexanoic acid), caprylic acid (octanoic acid), carbonic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfuric acid, ethane-l,2-disulfonic acid, ethanesulfonic acid, formic acid, fumaric acid, galactaric acid, gentisic acid, d-glucoheptonic acid, d-gluconic acid, d-glucuronic acid, glutamic acid, glutaric acid, glycerophosphoric acid, glycolic acid, hippuric acid, hydrobromic acid, hydrochloric acid, isobutyric acid, lactic acid, lactobionic acid, lauric acid, maleic acid, l-malic acid, malonic acid, mandelic acid, methanesulfonic acid , naphthalene-l,5-disulfonic acid, naphthalene-2-sulfonic acid, nicotinic acid, nitric acid, oleic acid, oxalic acid, palmitic acid, pamoic acid, phosphoric acid, proprionic acid, 1- pyroglutamic acid, salicylic acid, sebacic acid, stearic acid, succinic acid, sulfuric acid, l-tartaric acid, thiocyanic acid, p-toluenesulfonic acid, trifluoroacetic acid, and undecylenic acid acid salts.
The pharmaceutically acceptable acid addition salts can also exist as various solvates, such as with water, methanol, ethanol, dimethylformamide, and the like. Mixtures of such solvates can also be prepared. The source of such solvate can be from the solvent of crystallization, inherent in the solvent of preparation or crystallization, or adventitious to such solvent.
Wetting agents, emulsifiers and lubricants, such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
Examples of pharmaceutically acceptable antioxidants include: (1) water-soluble antioxidants, such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium metabi sulfite, sodium sulfite and the like; (2) oil-soluble antioxidants, such as ascorbyl palmitate, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), lecithin, propyl gallate, alpha-tocopherol, and the like; and (3) metal-chelating agents, such as citric acid, ethylenediamine tetraacetic acid (EDTA), sorbitol, tartaric acid, phosphoric acid, and the like.
Definitions
Unless otherwise defined herein, scientific and technical terms used in this application shall have the meanings that are commonly understood by those of ordinary skill in the art. Generally, nomenclature used in connection with, and techniques of, chemistry, cell and tissue culture, molecular biology, cell and cancer biology, neurobiology, neurochemistry, virology, immunology, microbiology, pharmacology, genetics and protein and nucleic acid chemistry, described herein, are those well known and commonly used in the art.
The methods and techniques of the present disclosure are generally performed, unless otherwise indicated, according to conventional methods well known in the art and as described in various general and more specific references that are cited and discussed throughout this specification. See, e.g.“Principles of Neural Science”, McGraw-Hill Medical, New York, N.Y. (2000); Motulsky,“Intuitive Biostatistics”, Oxford University Press, Inc. (1995); Lodish et ah,“Molecular Cell Biology, 4th ed”, W. H. Freeman & Co., New York (2000); Griffiths et ah,“Introduction to Genetic Analysis, 7th ed”, W. H. Freeman & Co., N.Y. (1999); and Gilbert et ak,“Developmental Biology, 6th ed”, Sinauer Associates, Inc., Sunderland, MA (2000). Chemistry terms used herein, unless otherwise defined herein, are used according to conventional usage in the art, as exemplified by“The McGraw-Hill Dictionary of Chemical Terms”, Parker S., Ed., McGraw-Hill, San Francisco, C.A. (1985).
All of the above, and any other publications, patents and published patent applications referred to in this application are specifically incorporated by reference herein. In case of conflict, the present specification, including its specific definitions, will control.
The term“agent” is used herein to denote a chemical compound (such as an organic or inorganic compound, a mixture of chemical compounds), a biological macromolecule (such as a nucleic acid, an antibody, including parts thereof as well as humanized, chimeric and human antibodies and monoclonal antibodies, a protein or portion thereof, e.g., a peptide, a lipid, a carbohydrate), or an extract made from biological materials such as bacteria, plants, fungi, or animal (particularly mammalian) cells or tissues. Agents include, for example, agents whose structure is known, and those whose structure is not known.
A“patient,”“subject,” or“individual” are used interchangeably and refer to either a human or a non-human animal. These terms include mammals, such as humans, primates, livestock animals (including bovines, porcines, etc.), companion animals (e.g., canines, felines, etc.) and rodents (e.g., mice and rats).
“Treating” a condition or patient refers to taking steps to obtain beneficial or desired results, including clinical results. As used herein, and as well understood in the art, “treatment” is an approach for obtaining beneficial or desired results, including clinical results. Beneficial or desired clinical results can include, but are not limited to, alleviation or amelioration of one or more symptoms or conditions, diminishment of extent of disease, stabilized (i.e. not worsening) state of disease, preventing spread of disease, delay or slowing of disease progression, amelioration or palliation of the disease state, and remission (whether partial or total), whether detectable or undetectable.“Treatment” can also mean prolonging survival as compared to expected survival if not receiving treatment.
The term“preventing” is art-recognized, and when used in relation to a condition, such as a local recurrence (e.g., pain), a disease such as cancer, a syndrome complex such as heart failure or any other medical condition, is well understood in the art, and includes administration of a composition which reduces the frequency of, or delays the onset of, symptoms of a medical condition in a subject relative to a subject which does not receive the composition. Thus, prevention of cancer includes, for example, reducing the number of detectable cancerous growths in a population of patients receiving a prophylactic treatment relative to an untreated control population, and/or delaying the appearance of detectable cancerous growths in a treated population versus an untreated control population, e.g., by a statistically and/or clinically significant amount.
“Administering” or“administration of’ a substance, a compound or an agent to a subject can be carried out using one of a variety of methods known to those skilled in the art. For example, a compound or an agent can be administered, intravenously, arterially, intradermally, intramuscularly, intraperitoneally, subcutaneously, ocularly, sublingually, orally (by ingestion), intranasally (by inhalation), intraspinally, intracerebrally, and transdermally (by absorption, e.g., through a skin duct). A compound or agent can also appropriately be introduced by rechargeable or biodegradable polymeric devices or other devices, e.g., patches and pumps, or formulations, which provide for the extended, slow or controlled release of the compound or agent. Administering can also be performed, for example, once, a plurality of times, and/or over one or more extended periods.
Appropriate methods of administering a substance, a compound or an agent to a subject will also depend, for example, on the age and/or the physical condition of the subject and the chemical and biological properties of the compound or agent (e.g., solubility, digestibility, bioavailability, stability and toxicity). In some embodiments, a compound or an agent is administered orally, e.g., to a subject by ingestion. In some embodiments, the orally administered compound or agent is in an extended release or slow release formulation, or administered using a device for such slow or extended release.
As used herein, the phrase“conjoint administration” refers to any form of
administration of two or more different therapeutic agents such that the second agent is administered while the previously administered therapeutic agent is still effective in the body (e.g., the two agents are simultaneously effective in the patient, which may include synergistic effects of the two agents). For example, the different therapeutic compounds can be administered either in the same formulation or in separate formulations, either
concomitantly or sequentially. Thus, an individual who receives such treatment can benefit from a combined effect of different therapeutic agents.
A“therapeutically effective amount” or a“therapeutically effective dose” of a drug or agent is an amount of a drug or an agent that, when administered to a subject will have the intended therapeutic effect. The full therapeutic effect does not necessarily occur by administration of one dose, and may occur only after administration of a series of doses.
Thus, a therapeutically effective amount may be administered in one or more administrations. The precise effective amount needed for a subject will depend upon, for example, the subject’s size, health and age, and the nature and extent of the condition being treated, such as cancer or MDS. The skilled worker can readily determine the effective amount for a given situation by routine experimentation.
The term“acetal” is art-recognized and may be represented by the general formula
Figure imgf000022_0001
wherein each RA independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of RA taken together with another and the intervening atom(s) complete a carbocycle or heterocycle having from 4 to 8 atoms in the ring structure.
The term“acyl” is art-recognized and refers to a group represented by the general formula hydrocarbylC(O)-, preferably alkylC(O)-.
The term“acylamino” is art-recognized and refers to an amino group substituted with an acyl group and may be represented, for example, by the formula hydrocarbylC(0)NH-.
The term“acyloxy” is art-recognized and refers to a group represented by the general formula hydrocarbylC(0)0-, preferably alkylC(0)0-.
The term“alkoxy” refers to an alkyl group, preferably a lower alkyl group, having an oxygen attached thereto. Representative alkoxy groups include methoxy, trifluoromethoxy, ethoxy, propoxy, tert-butoxy and the like.
The term“alkoxyalkyl” refers to an alkyl group substituted with an alkoxy group and may be represented by the general formula alkyl-O-alkyl.
The term“alkenyl”, as used herein, refers to an aliphatic group containing at least one double bond and is intended to include both "unsubstituted alkenyls" and "substituted alkenyls", the latter of which refers to alkenyl moieties having substituents replacing a hydrogen on one or more carbons of the alkenyl group. Such substituents may occur on one or more carbons that are included or not included in one or more double bonds. Moreover, such substituents include all those contemplated for alkyl groups, as discussed below, except where stability is prohibitive. For example, substitution of alkenyl groups by one or more alkyl, carbocyclyl, aryl, heterocyclyl, or heteroaryl groups is contemplated.
An“alkyl” group or“alkane” is a straight chained or branched non-aromatic hydrocarbon which is completely saturated. Typically, a straight chained or branched alkyl group has from 1 to about 20 carbon atoms, preferably from 1 to about 10 unless otherwise defined. Examples of straight chained and branched alkyl groups include methyl, ethyl, n- propyl, iso-propyl, n-butyl, sec-butyl, tert-butyl, pentyl, hexyl, pentyl and octyl. A C1-C6 straight chained or branched alkyl group is also referred to as a "lower alkyl" group.
Moreover, the term "alkyl" (or "lower alkyl") as used throughout the specification, examples, and claims is intended to include both "unsubstituted alkyls" and "substituted alkyls", the latter of which refers to alkyl moieties having substituents replacing a hydrogen on one or more carbons of the hydrocarbon backbone. Such substituents, if not otherwise specified, can include, for example, a halogen (e.g., fluoro), a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxy, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety. In preferred embodiments, the substituents on substituted alkyls are selected from C1-6 alkyl, C3-6 cycloalkyl, halogen, carbonyl, cyano, or hydroxyl. In more preferred embodiments, the substituents on substituted alkyls are selected from fluoro, carbonyl, cyano, or hydroxyl. It will be understood by those skilled in the art that the moieties substituted on the hydrocarbon chain can themselves be substituted, if appropriate. For instance, the substituents of a substituted alkyl may include substituted and unsubstituted forms of amino, azido, imino, amido, phosphoryl (including phosphonate and phosphinate), sulfonyl (including sulfate, sulfonamido, sulfamoyl and sulfonate), and silyl groups, as well as ethers, alkylthios, carbonyls (including ketones, aldehydes, carboxylates, and esters), -CF3, -CN and the like. Exemplary substituted alkyls are described below. Cycloalkyls can be further substituted with alkyls, alkenyls, alkoxys, alkylthios, aminoalkyls, carbonyl -substituted alkyls, -CF3, -CN, and the like.
The term“Cx-y” when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups that contain from x to y carbons in the chain. For example, the term“Cx-y alkyl” refers to substituted or unsubstituted saturated hydrocarbon groups, including straight-chain alkyl and branched-chain alkyl groups that contain from x to y carbons in the chain, including haloalkyl groups. Preferred haloalkyl groups include trifluoromethyl, difluoromethyl, 2,2,2-trifluoroethyl, and pentafluoroethyl. Co alkyl indicates a hydrogen where the group is in a terminal position, a bond if internal. The terms“C2-y alkenyl” and“C2-y alkynyl” refer to substituted or unsubstituted unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double or triple bond respectively.
The term“alkylamino”, as used herein, refers to an amino group substituted with at least one alkyl group.
The term“alkylthio”, as used herein, refers to a thiol group substituted with an alkyl group and may be represented by the general formula alkylS-.
The term“alkynyl”, as used herein, refers to an aliphatic group containing at least one triple bond and is intended to include both "unsubstituted alkynyls" and "substituted alkynyls", the latter of which refers to alkynyl moieties having substituents replacing a hydrogen on one or more carbons of the alkynyl group. Such substituents may occur on one or more carbons that are included or not included in one or more triple bonds. Moreover, such substituents include all those contemplated for alkyl groups, as discussed above, except where stability is prohibitive. For example, substitution of alkynyl groups by one or more alkyl, carbocyclyl, aryl, heterocyclyl, or heteroaryl groups is contemplated.
The term“amide”, as used herein, refers to a group
Figure imgf000024_0001
wherein each RA independently represent a hydrogen or hydrocarbyl group, or two RA are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
The terms“amine” and“amino” are art-recognized and refer to both unsubstituted and substituted amines and salts thereof, e.g., a moiety that can be represented by
Figure imgf000024_0002
wherein each RA independently represents a hydrogen or a hydrocarbyl group, or two RA are taken together with the N atom to which they are attached complete a heterocycle having from 4 to 8 atoms in the ring structure.
The term“aminoalkyl”, as used herein, refers to an alkyl group substituted with an amino group.
The term“aralkyl”, as used herein, refers to an alkyl group substituted with an aryl group. The term“aryl” as used herein include substituted or unsubstituted single-ring aromatic groups in which each atom of the ring is carbon. Preferably the ring is a 6- or 10- membered ring, more preferably a 6-membered ring. The term“aryl” also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls. Aryl groups include benzene, naphthalene, phenanthrene, phenol, aniline, and the like.
The term“boron” as used herein with respect to a substituent on an organic compound, is art-recognized and refers to a group -B(RA)2, wherein each RA independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of RA taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
The term“boronic ester” or“boronate ester” as used herein is art-recognized and refers to a group -B(ORA)2, wherein each RA independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of RA taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
The term“carbamate” is art-recognized and refers to a group
Figure imgf000025_0001
wherein each RA independently represent hydrogen or a hydrocarbyl group, such as an alkyl group, or both RA taken together with the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
The terms“carbocycle”, and“carbocyclic”, as used herein, refers to a saturated or unsaturated ring in which each atom of the ring is carbon. The term carbocycle includes both aromatic carbocycles and non-aromatic carbocycles. Non-aromatic carbocycles include both cycloalkane rings, in which all carbon atoms are saturated, and cycloalkene rings, which contain at least one double bond.“Carbocycle” includes 5-7 membered monocyclic and 8-12 membered bicyclic rings. Each ring of a bicyclic carbocycle may be selected from saturated, unsaturated and aromatic rings. Carbocycle includes bicyclic molecules in which one, two or three or more atoms are shared between the two rings. The term“fused carbocycle” refers to a bicyclic carbocycle in which each of the rings shares two adjacent atoms with the other ring. Each ring of a fused carbocycle may be selected from saturated, unsaturated and aromatic rings. In an exemplary embodiment, an aromatic ring, e.g., phenyl, may be fused to a saturated or unsaturated ring, e.g., cyclohexane, cyclopentane, or cyclohexene. Any combination of saturated, unsaturated and aromatic bicyclic rings, as valence permits, is included in the definition of carbocyclic. Exemplary“carbocycles” include cyclopentane, cyclohexane, bicyclo[2.2. l]heptane, l,5-cyclooctadiene, l,2,3,4-tetrahydronaphthalene, bicyclo[4.2.0]oct-3-ene, naphthalene and adamantane. Exemplary fused carbocycles include decalin, naphthalene, l,2,3,4-tetrahydronaphthalene, bicyclo[4.2.0]octane, 4,5,6,7-tetrahydro- lH-indene and bicyclo[4. l.0]hept-3-ene.“Carbocycles” may be substituted at any one or more positions capable of bearing a hydrogen atom.
A“cycloalkyl” group is a cyclic hydrocarbon which is completely saturated.
“Cycloalkyl” includes monocyclic and bicyclic rings. Typically, a monocyclic cycloalkyl group has from 3 to about 10 carbon atoms, more typically 3 to 8 carbon atoms unless otherwise defined. The second ring of a bicyclic cycloalkyl may be selected from saturated, unsaturated and aromatic rings. Cycloalkyl includes bicyclic molecules in which one, two or three or more atoms are shared between the two rings. The term“fused cycloalkyl” refers to a bicyclic cycloalkyl in which each of the rings shares two adjacent atoms with the other ring. The second ring of a fused bicyclic cycloalkyl may be selected from saturated, unsaturated and aromatic rings. A“cycloalkenyl” group is a cyclic hydrocarbon containing one or more double bonds.
The term“carbocyclylalkyl”, as used herein, refers to an alkyl group substituted with a carbocycle group.
The term“carbonate” is art-recognized and refers to a group -0C02-RA, wherein RA represents a hydrocarbyl group.
The term“carboxy”, as used herein, refers to a group represented by the
formula -CO2H.
The term“diazo”, as used herein, refers to a group represented by the formula =N=N.
The term“disulfide” is art-recognized and refers to a group -S-S-RA, wherein RA represents a hydrocarbyl group.
The term“enol ester”, as used herein, refers to a group -C(0)0-C(RA)=C(RA)2 wherein RA represents a hydrocarbyl group. The term“ester”, as used herein, refers to a group -C(0)0RA wherein RA represents a hydrocarbyl group.
The term“ether”, as used herein, refers to a hydrocarbyl group linked through an oxygen to another hydrocarbyl group. Accordingly, an ether substituent of a hydrocarbyl group may be hydrocarbyl-O-. Ethers may be either symmetrical or unsymmetrical.
Examples of ethers include, but are not limited to, heterocycle-O-heterocycle and aryl-O- heterocycle. Ethers include“alkoxyalkyl” groups, which may be represented by the general formula alkyl-O-alkyl.
The terms“halo” and“halogen” as used herein means halogen and includes chloro, fluoro, bromo, and iodo.
The terms“hetaralkyl” and“heteroaralkyl”, as used herein, refers to an alkyl group substituted with a hetaryl group.
The term "heteroalkyl", as used herein, refers to a saturated or unsaturated chain of carbon atoms and at least one heteroatom, wherein no two heteroatoms are adjacent.
The terms“heteroaryl” and“hetaryl” include substituted or unsubstituted aromatic single ring structures, preferably 5- to 7-membered rings, more preferably 5- to 6-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms. The terms“heteroaryl” and“hetaryl” also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is
heteroaromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls. Heteroaryl groups include, for example, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, pyrazole, pyridine, pyrazine, pyridazine, and pyrimidine, and the like.
The term“heteroatom” as used herein means an atom of any element other than carbon or hydrogen. Preferred heteroatoms are nitrogen, oxygen, and sulfur.
The terms“heterocyclyl”,“heterocycle”, and“heterocyclic” refer to substituted or unsubstituted non-aromatic ring structures, preferably 3- to lO-membered rings, more preferably 3- to 7-membered rings, whose ring structures include at least one heteroatom, preferably one to four heteroatoms, more preferably one or two heteroatoms. The terms “heterocyclyl” and“heterocyclic” also include polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings wherein at least one of the rings is heterocyclic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls. Heterocyclyl groups include, for example, piperidine, piperazine, pyrrolidine, tetrahydropyran, tetrahydrofuran, morpholine, lactones, lactams, and the like.
The term“heterocyclylalkyl”, as used herein, refers to an alkyl group substituted with a heterocycle group.
The term“hydrocarbyl”, as used herein, refers to a group that is bonded through a carbon atom that does not have a =0 or =S substituent, and typically has at least one carbon- hydrogen bond and a primarily carbon backbone, but may optionally include heteroatoms. Thus, groups like methyl, ethoxyethyl, 2-pyridyl, and trifluoromethyl are considered to be hydrocarbyl for the purposes of this application, but substituents such as acetyl (which has a =0 substituent on the linking carbon) and ethoxy (which is linked through oxygen, not carbon) are not. Hydrocarbyl groups include, but are not limited to aryl, heteroaryl, carbocycle, heterocyclyl, alkyl, alkenyl, alkynyl, and combinations thereof.
The term“hydroxyalkyl”, as used herein, refers to an alkyl group substituted with a hydroxy group.
The term“lower” when used in conjunction with a chemical moiety, such as, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy is meant to include groups where there are ten or fewer non-hydrogen atoms in the substituent, preferably six or fewer. A“lower alkyl”, for example, refers to an alkyl group that contains ten or fewer carbon atoms, preferably six or fewer. In certain embodiments, acyl, acyloxy, alkyl, alkenyl, alkynyl, or alkoxy substituents defined herein are respectively lower acyl, lower acyloxy, lower alkyl, lower alkenyl, lower alkynyl, or lower alkoxy, whether they appear alone or in combination with other substituents, such as in the recitations hydroxyalkyl and aralkyl (in which case, for example, the atoms within the aryl group are not counted when counting the carbon atoms in the alkyl substituent).
The term“orthoester” as used herein is art-recognized and refers to a group - C(ORA)3, wherein each RA independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of RA taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
The term“phosphoester”, as used herein, refers to a group -P(02)0H.
The term“phosphodiester”, as used herein, refers to a group -P(02)0RA wherein RA represents a hydrocarbyl group. The terms“polycyclyl”,“polycycle”, and“polycyclic” refer to two or more rings (e.g., cycloalkyls, cycloalkenyls, cycloalkynyls, aryls, heteroaryls, and/or heterocyclyls) in which two or more atoms are common to two adjoining rings, e.g., the rings are“fused rings”. Each of the rings of the polycycle can be substituted or unsubstituted. In certain embodiments, each ring of the poly cycle contains from 3 to 10 atoms in the ring, preferably from 5 to 7.
The term“selenide”, as used herein, is equivalent to an ether, wherein the oxygen is replaced with a selenium.
The term“selenoxide” is art-recognized and refers to the group -Se(0)-RA, wherein RA represents a hydrocarbyl.
The term“siloxane” is art-recognized and refers to a group with an Si-O-Si linkage, such as the group -Si(RA)2-0-Si-(RA)3, wherein each RA independently represents hydrogen or hydrocarbyl, such as alkyl, or both RA taken together with the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
The term“silyl” refers to a silicon moiety with three hydrocarbyl moieties attached thereto.
The term“substituted” refers to moieties having substituents replacing a hydrogen on one or more carbons of the backbone. It will be understood that“substitution” or“substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by
rearrangement, cyclization, elimination, etc. As used herein, the term“substituted” is contemplated to include all permissible substituents of organic compounds. In a broad aspect, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and non-aromatic substituents of organic compounds. The permissible substituents can be one or more and the same or different for appropriate organic compounds. For purposes of this invention, the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. Substituents can include any substituents described herein, for example, a halogen, a hydroxyl, a carbonyl (such as a carboxyl, an alkoxycarbonyl, a formyl, or an acyl), a thiocarbonyl (such as a thioester, a thioacetate, or a thioformate), an alkoxy, a phosphoryl, a phosphate, a phosphonate, a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl, a heterocyclyl, an aralkyl, or an aromatic or heteroaromatic moiety. In preferred embodiments, the substituents on substituted alkyls are selected from Ci-6 alkyl, C3-6 cycloalkyl, halogen, carbonyl, cyano, or hydroxyl. In more preferred embodiments, the substituents on substituted alkyls are selected from fluoro, carbonyl, cyano, or hydroxyl. It will be understood by those skilled in the art that substituents can themselves be substituted, if appropriate. Unless specifically stated as“unsubstituted,” references to chemical moieties herein are understood to include substituted variants. For example, reference to an“aryl” group or moiety implicitly includes both substituted and unsubstituted variants.
The term“sulfate” is art-recognized and refers to the group -OSO3H, or a
pharmaceutically acceptable salt thereof.
The term“sulfonamide” is art-recognized and refers to the group represented by the general formulae
Figure imgf000030_0001
wherein each RA independently represents hydrogen or hydrocarbyl, such as alkyl, or both RA taken together with the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
The term“sulfoxide” is art-recognized and refers to the group -S(0)-Ra, wherein RA represents a hydrocarbyl.
The term“sulfonate” is art-recognized and refers to the group SCbH, or a
pharmaceutically acceptable salt thereof.
The term“sulfone” is art-recognized and refers to the group -S(0)2-RA, wherein RA represents a hydrocarbyl.
The term“thioalkyl”, as used herein, refers to an alkyl group substituted with a thiol group.
The term“thioester”, as used herein, refers to a group -C(0)SRA or -SC(0)RA wherein RA represents a hydrocarbyl.
The term“thioether”, as used herein, is equivalent to an ether, wherein the oxygen is replaced with a sulfur.
The term“urea” is art-recognized and may be represented by the general formula
Figure imgf000031_0001
wherein each RA independently represents hydrogen or a hydrocarbyl, such as alkyl, or any occurrence of RA taken together with another and the intervening atom(s) complete a heterocycle having from 4 to 8 atoms in the ring structure.
“Protecting group” refers to a group of atoms that, when attached to a reactive functional group in a molecule, mask, reduce or prevent the reactivity of the functional group. Typically, a protecting group may be selectively removed as desired during the course of a synthesis. Examples of protecting groups can be found in Greene and Wuts, Protective Groups in Organic Chemistry, 3rd Ed., 1999, John Wiley & Sons, NY and Harrison et ah, Compendium of Synthetic Organic Methods, Vols. 1-8, 1971-1996, John Wiley & Sons, NY. Representative nitrogen protecting groups include, but are not limited to, formyl, acetyl, trifluoroacetyl, benzyl, benzyloxycarbonyl (“CBZ”), tert-butoxycarbonyl (“Boc”), trimethyl silyl (“TMS”), 2-trimethylsilyl-ethanesulfonyl (“TES”), trityl and substituted trityl groups, allyloxycarbonyl, 9-fluorenylmethyloxycarbonyl (“FMOC”), nitro- veratryloxycarbonyl (“NVOC”) and the like. Representative hydroxyl protecting groups include, but are not limited to, those where the hydroxyl group is either acylated (esterified) or alkylated such as benzyl and trityl ethers, as well as alkyl ethers, tetrahydropyranyl ethers, trialkylsilyl ethers (e.g., TMS or TIPS groups), glycol ethers, such as ethylene glycol and propylene glycol derivatives and allyl ethers.
The term“modulate” as used herein includes the inhibition or suppression of a function or activity (such as cell proliferation) as well as the enhancement of a function or activity.
The phrase“pharmaceutically acceptable” is art-recognized. In certain embodiments, the term includes compositions, excipients, adjuvants, polymers and other materials and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
“Pharmaceutically acceptable salt” or“salt” is used herein to refer to an acid addition salt or a basic addition salt which is suitable for or compatible with the treatment of patients. The term“pharmaceutically acceptable acid addition salt” as used herein means any non-toxic organic or inorganic salt of any base compounds represented by Formula I.
Illustrative inorganic acids which form suitable salts include hydrochloric, hydrobromic, sulfuric and phosphoric acids, as well as metal salts such as sodium monohydrogen orthophosphate and potassium hydrogen sulfate. Illustrative organic acids that form suitable salts include mono-, di-, and tricarboxylic acids such as glycolic, lactic, pyruvic, malonic, succinic, glutaric, fumaric, malic, tartaric, citric, ascorbic, maleic, benzoic, phenylacetic, cinnamic and salicylic acids, as well as sulfonic acids such as p-toluene sulfonic and methanesulfonic acids. Either the mono or di-acid salts can be formed, and such salts may exist in either a hydrated, solvated or substantially anhydrous form. In general, the acid addition salts of compounds of Formula I are more soluble in water and various hydrophilic organic solvents, and generally demonstrate higher melting points in comparison to their free base forms. The selection of the appropriate salt will be known to one skilled in the art.
Other non-pharmaceutically acceptable salts, e.g., oxalates, may be used, for example, in the isolation of compounds of Formula I for laboratory use, or for subsequent conversion to a pharmaceutically acceptable acid addition salt.
The term“pharmaceutically acceptable basic addition salt” as used herein means any non-toxic organic or inorganic base addition salt of any acid compounds represented by Formula I or any of their intermediates. Illustrative inorganic bases which form suitable salts include lithium, sodium, potassium, calcium, magnesium, or barium hydroxide. Illustrative organic bases which form suitable salts include aliphatic, alicyclic, or aromatic organic amines such as methylamine, trimethylamine and picoline or ammonia. The selection of the appropriate salt will be known to a person skilled in the art.
Many of the compounds useful in the methods and compositions of this disclosure have at least one stereogenic center in their structure. This stereogenic center may be present in a R or a S configuration, said R and S notation is used in correspondence with the rules described in Pure Appl. Chem. (1976), 45, 11-30. The disclosure contemplates all stereoisomeric forms such as enantiomeric and diastereoisomeric forms of the compounds, salts, prodrugs or mixtures thereof (including all possible mixtures of stereoisomers). See, e.g., WO 01/062726.
Furthermore, certain compounds which contain alkenyl groups may exist as Z (zusammen) or E (entgegen) isomers. In each instance, the disclosure includes both mixture and separate individual isomers. Some of the compounds may also exist in tautomeric forms. Such forms, although not explicitly indicated in the formulae described herein, are intended to be included within the scope of the present disclosure.
“Prodrug” or“pharmaceutically acceptable prodrug” refers to a compound that is metabolized, for example hydrolyzed or oxidized, in the host after administration to form the compound of the present disclosure (e.g., compounds of formula I). Typical examples of prodrugs include compounds that have biologically labile or cleavable (protecting) groups on a functional moiety of the active compound. Prodrugs include compounds that can be oxidized, reduced, aminated, deaminated, hydroxylated, dehydroxylated, hydrolyzed, dehydrolyzed, alkylated, dealkylated, acylated, deacylated, phosphorylated, or
dephosphorylated to produce the active compound. Examples of prodrugs using ester or phosphoramidate as biologically labile or cleavable (protecting) groups are disclosed in U.S. Patents 6,875,751, 7,585,851, and 7,964,580, the disclosures of which are incorporated herein by reference. The prodrugs of this disclosure are metabolized to produce a compound of Formula I. The present disclosure includes within its scope, prodrugs of the compounds described herein. Conventional procedures for the selection and preparation of suitable prodrugs are described, for example, in“Design of Prodrugs” Ed. H. Bundgaard, Elsevier, 1985.
The phrase“pharmaceutically acceptable carrier” as used herein means a
pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filter, diluent, excipient, solvent or encapsulating material useful for formulating a drug for medicinal or therapeutic use.
The term“Log of solubility”,“LogS” or“logS” as used herein is used in the art to quantify the aqueous solubility of a compound. The aqueous solubility of a compound significantly affects its absorption and distribution characteristics. A low solubility often goes along with a poor absorption. LogS value is a unit stripped logarithm (base 10) of the solubility measured in mol/liter.
EXAMPLES
The invention now being generally described, it will be more readily understood by reference to the following examples which are included merely for purposes of illustration of certain aspects and embodiments of the present invention, and are not intended to limit the invention.
Example 1 : Synthetic Procedures
All the solvents or reagents were purified according to literature procedures. High Resolution Mass Spectrometry was obtained on a Waters LCT Premier XE Time of Flight LC-MS. ¾ NMR, 13C NMR spectra were obtained on AV-300, ARX-400, ARX-500 or Avance-500 spectrometers. The chemical shifts are reported in parts per million (ppm, d). The coupling constants are reported in Hertz (Hz) and the resonance patterns are reported with the following notations: br (broad), s (singlet), d (double), t (triplet), q (quartet) and m (multiplet). High-resolution mass spectra were measured on a time-of-flight LC-MS. Thin- layer chromatography (TLC) was carried out using precoated silica gel sheets (Merck 60 F254). Visual detection was performed with ultraviolet light (short wave and long wave), p- anisaldehyde stain, and potassium permanganate stain.
General procedures for preparation of metformin analogues are provided in ET.S. Patent Pub. No. 2015/0158832, which is incorporated by reference herein in its entirety. Exemplary procedures are provided below.
Symmetrical metformin analogues (002 and 006): A mixture of sodium
dicyanoamide (1.335 g, 0.015 mol) and the desired secondary amine hydrochloride (0.030 mol) in xylenes (40 mL) was refluxed for 48 h. After it was cooled to 21 °C, the reaction mixture was evaporated to dryness under reduced pressure. The residue was dissolved in hot MeOH and filtered. The filtrate was concentrated followed by recrystallization two or three times to afford the desired products, 002 and 006.
Asymmetrical analogues (005): A mixture of sodium dicyanoamide (1.335 g, 0.015 mol) and pyrrolidine hydrochloride or dimethylamine hydrochloride (0.015 mol) in xylenes (40 mL) was refluxed for 12 h. After it was cooled to 21 °C, the reaction mixture was evaporated to dryness under reduced pressure. The residue was crystallized from MeOH to get the pure alkyldicyandiamide product as an intermediate. The alkyldicyandiamide (0.015 mol) was then dissolved in xylenes (40 mL), and then either piperidine hydrochloride or morpholine hydrochloride (0.015 mol) was added and the mixture was refluxed for another 48 h. The solvent was removed under vacuum and the crude residue was recrystallized twice from MeOH to provide the desired product 005.
Figure imgf000035_0001
/V-(Imino(piperidin- 1 -yl)methyl)piperidine- 1 -carboximidamide hydrochloride, 002, was obtained by following the general procedure for symmetric analogues in the presence of piperidine hydrochloride in 38% yield after crystallization from MeOH. 'H NMR (300 MHz, DMSO-£¾): d 7.10 (1H, s), 3.38 (8H, t , J= 15 Hz), 1.48 (12H, m). 13C NMR (75 MHz, DMSO-£¾): d 157.1, 45.6, 25.0, 23.7. HRMS (ESI) calcd for [CiiHisNs+Hf 238.2032, found 238.2026.
Figure imgf000035_0002
/V-(Imino(pyrrolidin-l-yl)methyl)piperidine-l -carboximidamide hydrochloride, 005, was obtained by following the general procedure for asymmetric analogues in the presence of pyrrolidine hydrochloride and then piperidine hydrochloride in 35% yield after crystallization from MeOH. ¾ NMR (300 MHz, DMSO-i¾): d 6.88 (1H, s), 3.40 (4H, br s), 3.29 (4H, br s), 1.83 (4H, br s), 1.54 (2H, br s), 1.48 (4H, br s). 13C NMR (75 MHz, DMSO-ά): d 156.4, 156.1, 46.9, 45.6, 25.1, 24.8, 23.7. HRMS (ESI) calcd for [CiiUziNs+Hf 224.1875, found 224.1876.
Figure imgf000035_0003
006
A -( Im i n o(py rrol i di n- 1 -yl)methyl)pyrrolidine- 1 -carboximidamide hydrochloride, 006, was obtained by following the general procedure for symmetric analogues in the presence of pyrrolidine hydrochloride in 42% yield after crystallization from MeOH. 'H NMR (300 MHz, DMSO-i¾): d 6.97 (1H, s), 3.30 (8H, br s), 1.83 (8H, br s). 13C NMR (75 MHz, DMSO-i¾): d 155.5, 46.9, 24.8. HRMS (ESI) calcd for [CioHigNs+Hf 210.1719, found 210.1717.
Example 2: Metformin analogues alone and combined with immune checkpoint inhibitors suppress TNBC progression in vivo .
In view of promising antitumor effects of analogues 002, 005 and 006 in vitro , analogue 005 was tested for antitumor effects using human TNBC xenografts in nude mouse models in vivo as compared with that of metformin. Results show that the analogue significantly outperforms metformin in blocking TNBC progression (FIG. 1A). Next, a pilot study was conducted to assess antitumor activity of analogue 006 alone or combined with an anti-PD-Ll immune checkpoint inhibitor. Murine mammary carcinoma 4T1 TNBC cells were implanted in immune-competent syngeneic BALB/c mice (FIG. IB). Analogue 006 alone or with anti-PD-Ll suppresses TNBCs in vivo as compared to control, and analogue 006 combined with anti-PD-Ll antibody therapy exhibits greater suppression of 4T1 tumor growth than that of anti-PD-Ll antibody given alone (P<0.00l).
Example 3: CD8+ T-cells and new biguanides.
Metformins are reported to suppress tumor growth in vivo in part by modulating CD8+ T cells (7). Hence, from the same experiment described in Example 2, the effect of biguanide 006 was assessed on the number of CD8+ T-cells present in mouse tumors harvested at day 10 after treatment. Cells were isolated and processed from primary 4T1 tumors by established methods, then stained with cell surface biomarkers and analyzed by mass cytometry (cyTOF). FIG. 2A shows an apparent increase in the occurance of CD8+ T-cells in 4T1 tumors of mice treated with biguanide 006 as compared to that of tumors treated with vehicle. In addition, we processsed 4T1 tumor specimens in parallel to perform
immunohistochemistry, and these findings confirm that increased numbers of CD8+ T-cells occur in the tumor microenvironment (not shown).
The presence of intratumoral T-cells is an independent predictor of improved survival (19,20) and has also been associated with a Thl cytokine signature in malignant CD8+ T- cells stimulated by cancer cell antigens, with increased secretion of IFNy, IL-2 and TNFa. Importantly, further investigations of CD8+ T-cell biomarkers using cyTOF indicate that these immune cell subsets also show evidence of biologic activation when exposed to metformin analogue 006, anti-PD-Ll antibody or the combination treatment as compared to the control -treated group (FIGs. 2B and 2C; R<0.01; n=5). Additional markers such as TNFa, IL-4, IL-2 and CD69hlgh-expressing cells are being explored in ongoing work.
Example 4: Myeloid-derived suppressor cells and new biguanides.
Tumors generate a suppressive microenvironment to evade the immune response by various mechanisms, including recruitment of regulatory T cells (Tregs) and myeloid-derived suppressor cells (MDSC) (12). These cell subtypes have emerged as key contributors to tumor immune suppression, tumor angiogenesis, drug resistance and promotion of tumor metastases (13, 14). In malignancy, myeloid cell differentiation into mature macrophage, dendritic cells and granulocytes is often diverted into pathways that favor the differentiation of pathological MDSC.
The effects of biguanide 006 on the expansion of MDSC populations were assessed. Two main subpopulations of MDSCs have been characterized previously: myelomonocytic MDSC (M-MDSC) and granulocytic MDSC (G-MDSC), also known as polymorphonuclear MDSC (15, 16). In mice that bear tumors, the prevalent subpopulation of MDSCs is the G- MDSC subset which suppress antigen-specific CD8+ TILs (15, 16). FIGs. 3A-3B show the results of an experiment that illustrates the G-MDSC subpopulations in tumors of mice, following treatment protocols described in Example 2. Mice were sacrificed at day 10 post- treatment, with tumors and spleens harvested. Briefly, tissues were collected following approved guidelines, with single-cell suspensions generated using a tumor dissociation kit. Tissues were minced into 2-mm pieces and mixed with recommended enzymes as per standard protocols (21). Single cell suspensions were stained using a cocktail of antibodies such as CD1 ltELyseG^LyOC10 for MDSCs, FoxP3 for Tregs, and others, including previous staining with cisplatin to discriminate live and dead cells. Analyses were then done by mass cytometry (cyTOF). G-MDSCs were stained and analyzed by cyTOF to discriminate between immune cell subpopulations, with G-MDSC defined as CD45+CDl lb+Ly6Ghi cells.
FIG. 3A shows a graphic representation of a viSNE clustering analysis using
Cytobank defines populations of distinct immune cells from tumors and spleens. Equal event sampling using 10,000 events per individual sample was used. Cellular phenotypes were assigned to the viSNE plot based on distribution and expression characteristics using phenotypic markers: B cells (CDl9+CD220+), CD3+CD4+ and CD3+CD8+ TILs, Dendritic Cells (DC, CDl lc+MHCII+), Natural Killer cells (NK, CD335+CD161+), G-MDSC
(CD1 lb+Ly6GhiLy6Clow) M-MDSC (CD1 lb+Ly6ChiLy6Glow). Expression of G-MDSC (CD1 lb+ Ly6G+) in the gated CD45+ cells from tumors were measured by mass cytometry. Representative plots are shown in FIG. 3B, N=5. A representative example of the gating strategy used in these cyTOF experiments is shown in FIG. 3C.
These findings are consistent with independent studies that highlight MDSCs as valuable biomarkers and as potential therapeutic targets in malignancies (16, 17). The inhibition of suppressive activities towards CD8+ T cells in addition to inducing marked changes in the tumor microenvironment with respect to CD8+ TILs (7), provides evidence of synergism between the novel biguanides and immune checkpoint inhibitors. Example 5: Bone marrow isolates from breast cancer patients.
Further confirmation of the potential importance of biguanide 006 in the regulation of MDSCs was obtained in experiments using bone marrow isolates from breast cancer patients (14-21). Results shown in FIG. 4 indicate that biguanide 006 inhibits the expansion of human MDSCs derived from bone marrow specimens provided by breast cancer patients.
INCORPORATION BY REFERENCE
All publications and patents mentioned herein are hereby incorporated by reference in their entirety as if each individual publication or patent was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control.
1. Liu B, Fan Z, Edgerton SM, Deng X-S, Alimova IN, Lind SE, Thor AD (2009) Metformin induces unique biological and molecular responses in triple negative breast cancer cells. Cell Cycle 8(l3):2031-2040.
2. Taubes G (2012) Unraveling the Obesity-Cancer Connection. Science
335(6064):28-32.
3. Koh M, Lee J-C, Min C, Moon A (2013) A novel metformin derivative, HL010183, inhibits proliferation and invasion of triple-negative breast cancer cells. Bioorg. Med. Chem. 2l(8):2305-23 l3.
4. Evans JMM, Donnelly LA, Emslie-Smith AM, Alessi DR, Morris AD (2005) Metformin and reduced risk of cancer in diabetic patients. Brit. Med. J. 330(7503): 1304- 1305.
5. Dowling RJO, Niraula S, Chang MC, Done SJ, Ennis M, McCready DR, Leong WL, Escallon JM, Reedijk M, Goodwin PJ, Stambolic V (2015) Changes in insulin receptor signaling underlie neoadjuvant metformin administration in breast cancer: a prospective window of opportunity neoadjuvant study. Breast Cancer Res l7(l):32.
6. Jiralerspong S, Palla SL, Giordano SH, Meric-Bemstam F, Liedtke C, Barnett CM, Hsu L, Hung M-C, Hortobagyi GN, Gonzalez- Angulo AM (2009) Metformin and Pathologic Complete Responses to Neoadjuvant Chemotherapy in Diabetic Patients With Breast Cancer. J. Clin. Oncol. 27(20):3297-3302.
7. Eikawa S, Nishida M, Mizukami S, Yamazaki C, Nakayama E, Udono H (2015) Immune-mediated antitumor effect by type 2 diabetes drug, metformin. Proc. Natl. Acad. Sci. U.S.A. 112(6): 1809-1814. 8. Topalian Suzanne L, Drake Charles G, Pardoll Drew M (2015) Immune Checkpoint Blockade: A Common Denominator Approach to Cancer Therapy. Cancer Cell 27(4):450-46l.
9. Cimino-Mathews A, Foote J, Emens LA (2015) Immune Targeting in Breast Cancer. Oncology 29(5):375-385.
10. Bailey-Downs LC, Thorpe JE, Disch BC, Bastian A, Hauser PJ, Farasyn T, Berry WL, Hurst RE, Ihnat MA (2014) Development and Characterization of a Preclinical Model of Breast Cancer Lung Micrometastatic to Macrometastatic Progression. PLoS One 9(5):e98624.
11. Escuin-Ordinas H, Elliott MW, Atefi M, Lee M, Ng C, Wei L, Comin-Anduix B, Montecino-Rodriguez E, Avramis E, Radu C, Sharp LL, Ribas A (2013) PET imaging to non-invasively study immune activation leading to antitumor responses with a 4-1BB agonistic antibody. J. Immunother. Cancer 1 : 14-24.
12. Gajewski TF, Woo S-R, Zha Y, Spaapen R, Zheng Y, Corrales L, Spranger S (2013) Cancer immunotherapy strategies based on overcoming barriers within the tumor microenvironment. Curr. Opin. Immunol. 25(2):268-276.
13. Lindau D, Gielen P, Kroesen M, Wesseling P, Adema GJ (2013) The immunosuppressive tumour network: myeloid-derived suppressor cells, regulatory T cells and natural killer T cells. Immunology 138(2): 105-115.
14. Gabrilovich DI (2017) Myeloid-Derived Suppressor Cells. Cancer Immunol. Res. 5(l):3-8.
15. Gabrilovich DI, Ostrand-Rosenberg S, Bronte V (2012) Coordinated regulation of myeloid cells by tumours. Nat Rev Immunol 12:253-268.
16. Marvel D, Gabrilovich DI (2015) Myeloid-derived suppressor cells in the tumor microenvironment: expect the unexpected. J. Clin. Invest. l25(9):3356-3364.
17. Wesolowski R, Markowitz J, Carson WE (2013) Myeloid derived suppressor cells - a new therapeutic target in the treatment of cancer. J. Immunother. Cancer 1(1): 10.
18. Ruff ell B, Au A, Rugo HS, Esserman LJ, Hwang ES, Coussens LM (2012). Leukocyte composition of human breast cancer. Proc Natl Acad Sci U S A. l09(8):2796-80l.
19. Stanton SE, Adams S, Disis ML. Variation in the Incidence and Magnitude of Tumor-Infiltrating Lymphocytes in Breast Cancer Subtypes: A Systematic Review. JAMA Oncol. 2016;2: 1354-1360. 20. Siska PJ, Rathmell JC. T cell metabolic fitness in antitumor immunity. Trends Immunol. 2015;36:257-64. PMCID: PMC4393792.
21. Hu-Lieskovan S, Mok S, Hornet Moreno B, Tsoi J, Robert L, Goedert L, Pinheiro EM, Koya RC, Graeber TG, Comin-Anduix B, Ribas A. Improved antitumor activity of immunotherapy with BRAF and MEK inhibitors in BRAF V600E melanoma. Sci. Transl. Med. 2015; 7:241-79. PMCID:PMC4765379.
EQUIVALENTS
While specific embodiments of the subject invention have been discussed, the above specification is illustrative and not restrictive. Many variations of the invention will become apparent to those skilled in the art upon review of this specification and the claims below. The full scope of the invention should be determined by reference to the claims, along with their full scope of equivalents, and the specification, along with such variations.

Claims

We claim:
1. A pharmaceutical composition comprising a compound of formula A, or a
pharmaceutically acceptable salt thereof, and an immune therapy:
Figure imgf000041_0001
wherein:
L1 and L2 are independently a bond or -NH-C(NH)-;
RA is -NR'R2, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; R1 and R2 taken together with the N that separate them complete a heterocycle;
RB is -NR3R4, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; or R3 and R4 taken together with the N that separate them complete a heterocycle;
R1 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R2 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R1 and R2 taken together with the N that separates them complete a heterocycle;
R3 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R4 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R3 and R4 taken together with the N that separates them complete a heterocycle;
Rc is hydrogen or C1-C5 alkyl; and
R5 is hydrogen, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl.
2. The pharmaceutical composition of claim 1, wherein the compound of formula A is a compound of formula I:
Figure imgf000041_0002
3. The pharmaceutical composition of any one of the preceding claims, wherein:
R1 is H, alkyl or alkoxy;
R2 is H, alkyl or alkoxy; or R1 and R2, taken together, complete a 5-10 member heterocycle; R3 is H, alkyl or alkoxy; and
R4 is H, alkyl or alkoxy; or R3 and R4, taken together, complete a 5-10 member heterocycle.
4. The pharmaceutical composition of any one of the preceding claims, wherein if R1 and R2 are methyl, then R3 and R4 are not both hydrogen.
5. The pharmaceutical composition of any one of claims 1-4, wherein R1 is methoxy and R2 is methyl.
6. The pharmaceutical composition of any one of claims 1-4, wherein R1 is propyl and R2 is methyl.
7. The pharmaceutical composition of any one of the preceding claims, wherein R3 and R4 are H.
8. The pharmaceutical composition of any one of claims 1-3, wherein the compound is of formula la, or a pharmaceutically acceptable salt thereof:
Figure imgf000042_0001
wherein:
m is 0, 1, 2, or 3; and
n is 0, 1, 2, or 3.
9. The pharmaceutical composition of claim 8, wherein m and n are both 1.
10. The pharmaceutical composition of any one of the preceding claims, wherein the immune therapy is an immune checkpoint inhibitor, an indoleamine 2,3 -di oxygenase inhibitor, or an adoptive cell transfer therapy.
11. The pharmaceutical composition of any one of claims 1-10, wherein the immune therapy is an immune checkpoint inhibitor selected from anti-PD-l, anti-PD-Ll, or anti- CTLA-4.
12. The pharmaceutical composition of claim 11, wherein the immune checkpoint inhibitor is nivolumab, pembrolizumab, atezolizumab, durvalumab, avelumab, or
ipilumumab.
13. A method for treating a cancer, comprising administering a composition of any one of the preceding claims to a patient in need thereof.
14. A method for treating a cancer, comprising administering conjointly a compound of formula A, or a pharmaceutically acceptable salt thereof, and an immune therapy:
Figure imgf000043_0001
wherein:
L1 and L2 are independently a bond or -NH-C(NH)-;
RA is -NR'R2, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; R1 and R2 taken together with the N that separate them complete a heterocycle;
RB is -NR3R4, alkyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl; or R3 and R4 taken together with the N that separate them complete a heterocycle;
R1 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R2 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R1 and R2 taken together with the N that separates them complete a heterocycle;
R3 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R4 is hydrogen, -OR5, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or ;
R3 and R4 taken together with the N that separates them complete a heterocycle;
Rc is hydrogen or C1-C5 alkyl; and
R5 is hydrogen, alkyl, heteroalkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl.
15. The method of claim 14, wherein the compound of formula A is a compound of formula I:
Figure imgf000044_0001
16. The method of any one claims 14-15, wherein:
R1 is H, alkyl or alkoxy;
R2 is H, alkyl or alkoxy; or R1 and R2, taken together, complete a 5-10 member heterocycle; R3 is H, alkyl or alkoxy; and
R4 is H, alkyl or alkoxy; or R3 and R4, taken together, complete a 5-10 member heterocycle.
17. The method of any one of claims 14-16, wherein if R1 and R2 are methyl, then R3 and R4 are not both hydrogen.
18. The method of any one of claims 14-17, wherein R1 is methoxy and R2 is methyl.
19. The method of any one of claims 14-17, wherein R1 is propyl and R2 is methyl.
20. The method of any one of claims 14-17, wherein R3 and R4 are H.
21. The method of any one of claims 14-17, wherein the compound is of formula la, or a pharmaceutically acceptable salt thereof:
Figure imgf000044_0002
wherein:
m is 0, 1, 2, or 3; and
n is 0, 1, 2, or 3.
22. The method of claim 21, wherein m and n are both 1.
23. The method of any one of claims 14-22, wherein the immune therapy is an immune checkpoint inhibitor, an indoleamine 2,3-dioxygenase inhibitor, or an adoptive cell transfer therapy.
24. The method of any one of claims 14-23, wherein the immune therapy is an immune checkpoint inhibitor selected from anti-PD-l, anti-PD-Ll, or anti-CTLA-4.
25. The method composition of claim 24, wherein the immune checkpoint inhibitor is nivolumab, pembrolizumab, atezolizumab, durvalumab, avelumab, or ipilumumab.
26. The method of any one of claims 13-25, wherein the cancer is leukemia, lymphoma, Hodgkins lymphoma, colon cancer, breast cancer, prostate cancer, lung cancer, skin cancer, liver cancer, pancreatic cancer, ovarian cancer, bladder cancer, kidney cancer, bile duct cancer, esophageal cancer, cervical cancer, endometrial cancer, melanoma, head and neck cancer, brain cancer, glioma, neuroblastoma, osteosarcoma, chondrosarcoma, gastric carcinoma, glioma, mesothelioma, Kaposi sarcoma, liposarcoma, synovial sarcoma, or Wilm’s tumor.
27. The method of claim 26, wherein the cancer is melanoma, non-small cell lung cancer, renal cell carcinoma, bladder cancer, triple-negative breast cancer, or a gynecologic cancer such as endometrial, cervical, or ovarian cancer.
28. The method of claim 27, wherein the cancer is breast cancer, such as triple-negative breast cancer.
PCT/US2018/063058 2017-11-29 2018-11-29 Biguanide compositions and methods related thereto WO2019108788A1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201762592148P 2017-11-29 2017-11-29
US62/592,148 2017-11-29

Publications (1)

Publication Number Publication Date
WO2019108788A1 true WO2019108788A1 (en) 2019-06-06

Family

ID=66664606

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2018/063058 WO2019108788A1 (en) 2017-11-29 2018-11-29 Biguanide compositions and methods related thereto

Country Status (1)

Country Link
WO (1) WO2019108788A1 (en)

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2013188452A1 (en) * 2012-06-11 2013-12-19 The Regents Of The University Of California Compounds and methods of treating cancer
US20150126518A1 (en) * 2013-11-04 2015-05-07 Hanall Biopharma Co., Ltd. Biguanide compounds and use thereof

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2013188452A1 (en) * 2012-06-11 2013-12-19 The Regents Of The University Of California Compounds and methods of treating cancer
US20150126518A1 (en) * 2013-11-04 2015-05-07 Hanall Biopharma Co., Ltd. Biguanide compounds and use thereof

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
AFZAL M.Z. ET AL.: "Efficacy of metformin in combination with immune checkpoint inhibitors (anti-PD-1/anti-CTLA-4) in metastatic malignant melanoma", JOURNAL FOR IMMUNOTHERAPY OF CANCER, vol. 6, no. 1, December 2018 (2018-12-01), pages 1 - 10, XP021258050, Retrieved from the Internet <URL:https://jitc.biomedcentral.com/articles/10.1186/s40425-018-0375-1> *
EIKAWA S. ET AL.: "Immune-mediated antitumor effect by type 2 diabetes drug, metformin", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, vol. 112, no. 6, 10 February 2015 (2015-02-10), pages 1809 - 14, XP055400393, Retrieved from the Internet <URL:https://www.pnas.org/content/pnas/112/6/1809.full.pdf> doi:10.1073/pnas.1417636112 *
KIM S.H. ET AL.: "Phenformin inhibits myeloid-derived suppressor cells and enhances the anti- tumor activity of PD-1 blockade in melanoma", JOURNAL OF INVESTIGATIVE DERMATOLOGY, vol. 137, no. 8, 1 August 2017 (2017-08-01), pages 1740 - 8, XP055618603 *
SCHARPING N.E. ET AL.: "Efficacy of PD-1 blockade is potentiated by metformin-induced reduction of tumor hypoxia", CANCER IMMUNOLOGY RESEARCH, vol. 5, no. 1, 9 December 2016 (2016-12-09), pages 9 - 16, XP055618602, Retrieved from the Internet <URL:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5340074/pdf/nihms835819.pdf> *
VAZQUEZ-MARTIN A. ET AL.: "The anti-diabetic drug metformin suppresses self-renewal and proliferation of trastuzumab-resistant tumor-initiating breast cancer stem cells", BREAST CANCER RES. TREAT. 2011 APR, vol. 126, no. 2, 11 May 2010 (2010-05-11), pages 355 - 64, XP019890345, Retrieved from the Internet <URL:https://hal.archives-ouvertes.fr/hal-00583557/document> doi:10.1007/s10549-010-0924-x *

Similar Documents

Publication Publication Date Title
JP7032583B2 (en) Compositions and Methods of Inhibiting Arginase Activity
JP4151765B2 (en) Novel substituted purinyl derivatives having immunomodulatory activity
US20190062272A1 (en) Small molecules for immunogenic treatment of cancer
TWI759301B (en) Pegylated carfilzomib compounds
BR112013006769B1 (en) synergistic combination
CN110944634A (en) Compositions and methods for regulating hair growth
US20230310419A1 (en) Compounds and methods for treating cancer
WO2018047143A1 (en) Vista signaling pathway inhibitory compounds useful as immunomodulators
TW201938149A (en) Combination of a selective histone deacetylase 3 (HDAC3) inhibitor and an immunotherapy agent for the treatment of cancer
CA3124820A1 (en) Compositions and methods for modulating hair growth
JP2011520846A (en) Treatment of multiple myeloma
BR112021008781A2 (en) combination of small molecule cd-47 inhibitors with other anticancer agents
CN116419752A (en) Compositions and methods for treating diseases and disorders
US20230414723A1 (en) Enhanced hyt-induced protein degradation using lipid nanoparticle delivery
US20230174500A1 (en) Prodrugs of alpha-ketoglutarate, alpha-ketobutyrate, alpha-ketoisovalerate, and alpha-ketoisohexanoate, and uses thereof
WO2019108788A1 (en) Biguanide compositions and methods related thereto
CN117120054A (en) Combination therapy for the treatment of cancer
CN116710776A (en) Methods of treating diseases and disorders
WO2021205367A1 (en) Use of ep4 receptor antagonists for the treatment of liver cancer, melanoma, lymphoma and leukemia
CN107954946B (en) Phenothiazine compound and application thereof
US20230181593A1 (en) Compositions and methods for treating breast cancer
WO2024081447A1 (en) Egfr inhibitors for treating lung cancer
EP3417864A1 (en) Immunosuppression weaning agent and use thereof
US20230096160A1 (en) Compounds, compositions, and methods for protein degradation
WO2023168240A1 (en) Small molecule inhibitors of enpp1

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 18882770

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 18882770

Country of ref document: EP

Kind code of ref document: A1