WO2019075300A2 - Mayaro virus consensus antigens, dna antibody constructs for use against mayaro virus, and combinations thereof - Google Patents

Mayaro virus consensus antigens, dna antibody constructs for use against mayaro virus, and combinations thereof Download PDF

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WO2019075300A2
WO2019075300A2 PCT/US2018/055572 US2018055572W WO2019075300A2 WO 2019075300 A2 WO2019075300 A2 WO 2019075300A2 US 2018055572 W US2018055572 W US 2018055572W WO 2019075300 A2 WO2019075300 A2 WO 2019075300A2
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seq
mayv
acid sequence
nucleic acid
fragment
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PCT/US2018/055572
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WO2019075300A9 (en
WO2019075300A3 (en
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David B. Weiner
Kar MUTHUMANI
Sagar KUDCHODKAR
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The Wistar Institute Of Anatomy And Biology
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Publication of WO2019075300A3 publication Critical patent/WO2019075300A3/en
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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/08—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses
    • C07K16/10—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from RNA viruses
    • C07K16/1081—Togaviridae, e.g. flavivirus, rubella virus, hog cholera virus
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K39/12—Viral antigens
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00—Medicinal preparations containing antigens or antibodies
    • A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2770/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses positive-sense
    • C12N2770/00011—Details
    • C12N2770/36011—Togaviridae
    • C12N2770/36111—Alphavirus, e.g. Sindbis virus, VEE, EEE, WEE, Semliki
    • C12N2770/36122—New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2770/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses positive-sense
    • C12N2770/00011—Details
    • C12N2770/36011—Togaviridae
    • C12N2770/36111—Alphavirus, e.g. Sindbis virus, VEE, EEE, WEE, Semliki
    • C12N2770/36134—Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein

Definitions

  • the present invention relates to compositions comprising an immunological Mayaro virus antigen, compositions comprising a recombinant nucleic acid sequence for generating one or more synthetic antibodies, and functional fragments thereof, in vivo, and combinations thereof.
  • compositions of the invention provide improved methods for inducing immune responses, and for prophylactically and/or therapeutically immunizing individuals against Mayaro virus.
  • Mayaro virus is an emerging mosquito-transmitted alphavirus that causes signs and symptoms including an acute febrile illness and rash. However, it may also cause incapacitating arthralgias that develop into persistent, severe joint pain which continues for years after infection. MAYV is typically found in South America, but has recently been reported in the Caribbean Sea, as well as in travelers returning to the USA and Europe. Past epidemics have been associated with mosquito vectors, such as those in the genus
  • Haemagogus that are not likely to sustain transmission in humans, but concerns over the potential emergence of urban transmission were raised after a laboratory study showed that vector competence in Aedes mosquitoes is possible.
  • Humans experience high- titer viremia after infection with MAYV, and an urban cycle of transmission may develop that is identical to what has been seen for DENV, ZIKV, and CHIKV, where a single viremic traveler could initiate endemic or epidemic MAYV transmission.
  • the present invention is directed to combinations of one or more nucleic acid molecules encoding one or more anti-MAYV synthetic antibodies and one or more or more nucleic acid molecules encoding one or more MAYV antigens.
  • the present invention provides a composition comprising a first nucleic acid sequence wherein the nucleic acid sequence encodes a Mayaro Virus (MAYV) antigen and a second nucleic acid sequence encoding one or more anti-MAYV synthetic antibodies or fragments thereof or one or more anti-MAYV monoclonal antibodies.
  • MAYV Mayaro Virus
  • the MAYV antigen comprises an antigen selected from the group consisting of MAYV -El, MAYV-E2, MAYV-E3, MAYV-6K and MAYV-Capsid (CA).
  • MAYV-CA comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 104, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104, a fragment of SEQ ID NO: 104 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104.
  • the nucleic acid molecule encoding MAYV-CA comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 105, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105, a fragment of SEQ ID NO: 105 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105.
  • MAYV -El comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 106, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106, a fragment of SEQ ID NO: 106 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106.
  • the nucleic acid molecule encoding MAYV -El comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 107, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107, a fragment of SEQ ID NO: 107 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107.
  • MAYV-E2 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 108, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108, a fragment of SEQ ID NO: 108 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108.
  • the nucleic acid molecule encoding MAYV-E2 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 109, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109, a fragment of SEQ ID NO: 109 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109.
  • MAYV-E3 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 110, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110, a fragment of SEQ ID NO: 110 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110.
  • the nucleic acid molecule encoding MAYV-E3 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 111, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111, a fragment of SEQ ID NO: 111 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111.
  • MAYV-6K comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 112, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112, a fragment of SEQ ID NO: 112 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112.
  • the nucleic acid molecule encoding MAYV-6K comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 10, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 10, a fragment of SEQ ID NO: 113 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 113.
  • the MAYV antigen comprises MAYV-E2 and MAYV-E3.
  • the MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 114, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114, a fragment of SEQ ID NO: 114 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114.
  • the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 115, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115, a fragment of SEQ ID NO: 115 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115.
  • the MAYV antigen comprises MAYV-E1, MAYV-E2, MA YVES, and MAYV-6K.
  • the MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 116, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116, a fragment of SEQ ID NO: 116 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116.
  • the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 117, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117, a fragment of SEQ ID NO: 117 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117.
  • the composition further comprises a nucleic acid sequence further comprising a nucleic acid sequences that encode one or more proteins selected from the group consisting of: IL-12, IL-15 and IL-28.
  • the MAYV antigen is linked to an IgE leader sequence.
  • the one or more anti-MAYV synthetic antibodies binds to a MAYV antigen.
  • the MAYV antigen is selected from the group consisting of MAYV-Capsid, MAYV-E1, MAYV-E2, MAYV-E3, MAYV-6K, and any combination thereof.
  • the MAYV antigen comprises an amino acid sequence selected from EGHYNWHYGAVQYTG (SEQ ID NO: 101),
  • GRSVIHFSTASAAPS SEQ ID NO: 102
  • LAKCPPGEVISVSFV SEQ ID NO: 103
  • the second nucleic acid sequence further comprising a nucleotide sequence encoding a cleavage domain.
  • the second nucleic acid sequence encodes an anti- MAYV antibody.
  • the second nucleic acid sequence comprises a nucleotide sequence encoding an amino acid sequence at least 90% homologous to SEQ ID NO: l or 3.
  • the second nucleic acid sequence comprises a nucleotide sequence at least 90% homologous to SEQ ID NO:2 or 4.
  • the second nucleic acid sequence comprises a nucleotide sequence encoding an anti- MAYV heavy chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16. In one embodiment, the second nucleic acid sequence comprises a sequence encoding an anti- MAYV light chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
  • the second nucleic acid sequence comprises sequence encodes a leader sequence.
  • the one or more anti-MAYV monoclonal antibodies comprises a heavy chain and a light chain, wherein the heavy chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16 and the light chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
  • the present invention also provides methods for inducing an immune response by administering a combination of one or more nucleic acid molecules encoding one or more anti-MAYV synthetic antibodies and one or more or more nucleic acid molecules encoding one or more MAYV antigens.
  • immune response is an anti-MAYV immune response.
  • the immune response is persistent.
  • the immune response is immediate.
  • the immune response is systemic.
  • the present invention also provides methods for preventing or treating a disease in a subject.
  • the disease is a Mayaro virus infection.
  • the method comprises administering to the subject the composition of the invention.
  • Figure 1 depicts the development and characterization of a synthetic consensus Mayaro DNA vaccine.
  • Figure 1A depicts phylogenic analysis based on neighbor joining evaluation of MAYV-envelope sequences deposited in GenBank. The position of the scMAYV-E vaccine sequence in this tree is noted with an asterisk '*'
  • Figure IB depicts a schematic of the scMAYV-E vaccine construct generated.
  • scMAYV-E encodes all three envelope glycoproteins (El, E2, and E3) and the 6K/TF polypeptide linked by protease cleavage sites. The IgE-leader sequence was inserted at the 5' end to increase protein expression.
  • Figure 1C depicts computer-generated MAYV antigen model.
  • Figure ID depicts a view of El showing fusion loop in cyan.
  • the fusion loop is generally conserved among the alphaviruses.
  • E3 transparent red
  • the highly conserved MWGG sequence is visible at the loop's rightmost position.
  • the M residue is buried and predicted to interact with nearby TYR and PRO residues of E2.
  • the backbone portion of M participates in H-bonds with the nearby G at position i+3 to form a b-tum.
  • Figure IE depict western analyses of lysates from scMAYV-E or pVaxl transfected 293T cells incubated with pooled day 35 sera from scMAYV-E immunized mice.
  • a lane shown left of the ladder represents 2 ⁇ g of rEl probed with the same pooled day 35 sera from scMAYV-E-vaccinated mice.
  • Figure 2 depicts generation of recombinant MAYV-E1 (rEl) protein.
  • Figure 2A depicts MAYV-E1 from the consensus full-length envelope sequence of scMAYV-E cloned downstream of a 6x His Tag in the pET-30a ?. coli expression vector. Lysates from E. coli transfected with the pET-30a MAYV-E1 plasmid were subjected to nickel chromatography to isolate and purify recombinant MAYV-E1 (rEl) protein after which the 6xHis tag was removed.
  • Figure 2B depicts pooled purified proteins collected from the nickel columns run on a SDS-PAGE gel and subjected to silver staining.
  • Lane 1 signifies crude pooled-El proteins.
  • Lane 2 indicates the purified pooled-El proteins. Bands at expected MW of rEl are shown.
  • Figure 2C depicts western blot analysis of pooled purified protein collected from nickel columns ran on a 12% SDS-PAGE gel and transferred to a nitrocellulose membrane subsequently blotted with a pan-alphavirus monoclonal antibody (ThermoFisher; clone: G77L) and IRDye800-tagged anti-mouse secondary antibody, scanned on the Licor Odyssey system.
  • Figure 3 depicts experimental results demonstrating scMAYV-E vaccine induces a robust, MAYV-specific humoral response in mice including neutralizing antibodies.
  • Figure 3A depicts ELISA of sera from scMAYV-E immunized mice.
  • Half-log dilutions of sera from individual mice were evaluated for their binding capacity to a recombinant MAYV-E1 (rEl) capture antigen.
  • Figure 3B depicts rEl -specific IgG endpoint titers of scMAYV-E vaccinated mouse sera after each immunization.
  • the antibody endpoint titer was defined as the highest dilution of a serum sample with OD values > (mean + 3SD) of pVaxl vaccinated mice. Samples with a titer ⁇ 50 were given an endpoint titer of 1.
  • Figure 3C depicts IgG subclass isotyping of C57BL/6 pVaxl mouse sera and scMAYV-E mouse sera one week post third immunization (day 35).
  • Figure 3D depicts an indirect immunofluorescence assay of MAYV -infected Vero cells incubated with pooled day 35 sera from pVaxl or scMAYV-E immunized mice followed by FITC-tagged anti-mouse IgG secondary antibody (green) and DAPI (blue) to identify nuclei.
  • Figure 3E depicts an indirect immunofluorescence assay of MAYV -infected U87 neuronal cells incubated with pooled day 35 sera from scMAYV-E DNA immunized mice followed by FITC-tagged anti- mouse IgG secondary antibody (green) and DAPI (blue) to identify nuclei.
  • Figure 3F depicts a plaque reduction neutralization assay (PRNT50) of heat-inactivated pooled day 35 sera from uninfected naive, pVaxl, or scMAYV-E immunized mice. Serial two-fold dilutions of sera were incubated with 10 2 PFU of MAYV for 1.5 hours and then added to wells of confluent Vero cells. Plaque formation in wells was scored at 3 days post infection and % reduction of plaque formation was calculated in comparison to plaques formed in wells receiving virus only. PRNT50 value is calculated by a non-linear regression analysis using PRISM software.
  • Figure 4 depicts experimental results demonstrating scMAYV-E immune sera protect monocyte derived macrophages (MDMs) from MAYV infection-induced cell death.
  • Figure 4A depicts phase contrast images of MAYV -infected MDMs over time. Magnification: x20.
  • Figure 4B depicts phase contrast and fluorescent images of MDMs infected with MAYV preincubated with immune sera. 3-day - old cultures of MDMs were treated with DMEM media only, MAYV plus pVaxl sera, or MAYV preincubated with 1 : 100 dilution of pooled day 35 (post third immunization) immune sera from scMAYV-E immunized mice.
  • FIG. 4C depicts a histogram comparing the percentage of live cells in the control and experimental groups evaluated by Labelling Dye Green signals from six independent evaluations of the infected MDMs in Fig. 4B.
  • Figure 4D depicts percent viability of Vero CCL-81 cells inoculated 36 hours with supernatants from the infected MDM cultures from experiments described in Fig. 4B. The cell viabilities of Vero cells were assessed by Trypan Blue dye exclusion staining using a CountessTM II Automated Cell Counter. Each dot represents the cell viability from a single well +/- SEM counted in triplicates.
  • Figure 5 depicts experimental results demonstrating scMAYV-E induces a robust antigen specific cellular immune response to multiple epitopes in mice.
  • C57BL/6 mice were immunized with 25 ⁇ g of either pVaxl empty vector or scMAYV-E plasmid once and euthanized 2 weeks later, or three times at 2-week intervals then euthanized one week after the last immunization.
  • Splenocytes were harvested and cultured overnight in the presence of linear peptide pools spanning the full-length envelope protein.
  • Figure 5A depicts an IFN-g ELISpot assay used to measure IFN-g- producing spot-forming units (SFUs) generated per 10 6 splenocytes +/- SEM.
  • Figure 5B depicts IFN-g ELISpot assay performed on splenocytes from immunized animals after ex vivo stimulation with matrix peptide pools spanning the El protein.
  • Figure 5C depicts IFN-g ELISpot assay performed on splenocytes from immunized animals after ex vivo stimulation with matrix peptide pools spanning the E3+E2 proteins. Average IFN-g SFUs generated per 10 6 splenocytes +/- SEM for each peptide pool shown. The immunodominant epitopes in El and E3+E2 identified via the matrix peptide pools are indicated with arrows.
  • Figure 6 depicts experimental results demonstrating scMAYV-E induces both CD4+ and CD8+ T cell responses in mice.
  • Figure 6A depicts evaluation of splenocytes from immunized mice by polychromatic flow cytometry to identify the frequency of CD4 + T cells that produce the cytokines IFN-g, IL-2, and TNF-a following a 5-hour ex vivo stimulation with pooled MAYV envelope peptides spanning the entire length of the envelope protein.
  • Figure 6B depicts evaluation of splenocytes from immunized mice by polychromatic flow cytometry to identify the frequency of CD8 + T cells that produce the cytokines IFN-g, IL-2, and TNF-a following a 5 hour ex vivo stimulation with pooled MAYV envelope peptides spanning the entire length of the envelope protein.
  • Figure 6C depicts the frequency of total CD4 + and CD8 + T cells expressing each of the seven analyzed
  • Figure 7 depicts experimental results demonstrating scMAYV-E protects immunized mice from MAYV challenge.
  • IFNAR " mice aged 4-6 weeks old were immunized twice, two weeks apart with pVaxl or scMAYV-E using EP-enhanced i.m. injection. Groups of mice for immunogenicity studies were euthanized one week after the final immunization.
  • Figure 7E depicts representative pictures of rear footpad of uninfected mouse (naive), pVaxl immunized mouse (Infected/pVaxl), and scMAYV-E immunized mouse (Infected/scMAYV-E) at 6 days post challenge.
  • Figure 8 depicts experimental results demonstrating scMAYV-E induced humoral responses drive protection from MAYV challenge.
  • IFNAR /_ mice aged 4-6 weeks were immunized twice with 25 ⁇ g of scMAYV-E two weeks apart using EP-enhanced i.m. injection then euthanized one week after last immunization; immune sera and bulk splenocytes were collected.
  • a naive batch of IFNAR "7" mice of mixed sex aged 4-6 weeks were divided into three groups and injected i.p.
  • FIG. 8A depicts the percent change in bodyweight from day 0 shown for individual mice in each group.
  • Figure 8B depicts a Kaplan-Meier survival curve for each group.
  • Figure 9 depicts the Mayaro Virus DNA vaccine approach.
  • Figure 10 depicts the characterization of MAYV -Vaccine by Western blot analysis.
  • Figure 11 depicts an immunofluorescence assay demonstrating that IgG generated from MAYV-Env administered mice was capable of binding to MAYV-infected Vero cells.
  • Figure 12 depicts the development, expression, purification, and characterization of MAYV -Envelope Protein- (El) purification.
  • Figure 13 depicts the design of MAYV vaccine immunization studies in mice.
  • Figure 14 depicts experimental results demonstrating cellular immune responses induction by MAYV-Capsid and the MHC-class 1 binding prediction.
  • Figure 15 depicts the functional profile of CD4+ and CD8+ T cell responses elicited by MAYV-Capsid vaccine.
  • Figure 16 depicts experimental results demonstrating cellular immune responses elicited by MAYV-Env vaccines.
  • Figure 17 depicts experimental results demonstrating the functional profile of CD4+ and CD8+ T cell responses elicited by MAYV-Env vaccine.
  • Figure 18 depicts experimental results demonstrating induction of antibodies in mice- MAYV-Env Vaccine.
  • FIG 19 depicts the construction of DNA-based monoclonal antibody (DMAb) against MAYV-Env.
  • Figure 20 depicts the expression of MAYV-DMAb and IgG quantification.
  • the invention provides composition comprising one or more nucleotide sequences encoding one or more Mayaro virus (MAYV) antigens and one or more nucleotide sequences encoding one or more anti- MAYV synthetic antibodies or fragments thereof.
  • MAYV Mayaro virus
  • the invention provides a composition comprising a combination of a composition that elicits an immune response in a mammal against a MAYV antigen and a composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the recombinant nucleic acid sequence encoding an anti-MAYV antibody comprises sequences that encode a heavy chain and light chain.
  • the heavy chain and light chain polypeptides expressed from the recombinant nucleic acid sequences can assemble into the synthetic antibody.
  • the heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being capable of binding a MAYV antigen, being more immunogenic as compared to an antibody not assembled as described herein, and being capable of eliciting or inducing an immune response against the MAYV antigen.
  • these synthetic antibodies are generated more rapidly in the subject than antibodies that are produced in response to antigen induced immune response.
  • the synthetic antibodies are able to effectively bind and neutralize a range of MAYV antigens.
  • the synthetic antibodies are also able to effectively protect against and/or promote survival of MAYV infection and disease.
  • nucleic acid vaccines such as DNA plasmid vaccines, that are capable of generating in a mammal an immune response against a MAYV antigen.
  • the nucleic acid vaccines are comprised of a nucleic acid capable of expressing a MAYV antigen in a mammal.
  • the nucleic acid is comprised of a promoter operably linked to a coding sequence that encodes the MAYV antigen.
  • the present invention also provides methods for inducing an immune response by administering a combination of one or more nucleic acid molecules encoding one or more anti-MAYV synthetic antibodies and one or more or more nucleic acid molecules encoding one or more MAYV antigens.
  • immune response is an anti-MAYV immune response.
  • the immune response is persistent.
  • the immune response is immediate.
  • the immune response is systemic.
  • Antibody may mean an antibody of classes IgG, IgM, IgA, IgD or IgE, or fragments, fragments or derivatives thereof, including Fab, F(ab')2, Fd, and single chain antibodies, and derivatives thereof.
  • the antibody may be an antibody isolated from the serum sample of mammal, a polyclonal antibody, affinity purified antibody, or mixtures thereof which exhibits sufficient binding specificity to a desired epitope or a sequence derived therefrom.
  • Antibody fragment or “fragment of an antibody” as used interchangeably herein refers to a portion of an intact antibody comprising the antigen-binding site or variable region. The portion does not include the constant heavy chain domains (i.e. CH2, CH3, or CH4, depending on the antibody isotype) of the Fc region of the intact antibody.
  • antibody fragments include, but are not limited to, Fab fragments, Fab' fragments, Fab'-SH fragments, F(ab')2 fragments, Fd fragments, Fv fragments, diabodies, single-chain Fv (scFv) molecules, single-chain polypeptides containing only one light chain variable domain, single- chain polypeptides containing the three CDRs of the light-chain variable domain, single- chain polypeptides containing only one heavy chain variable region, and single-chain polypeptides containing the three CDRs of the heavy chain variable region.
  • Antigen refers to proteins that have the ability to generate an immune response in a host. An antigen may be recognized and bound by an antibody. An antigen may originate from within the body or from the external environment.
  • CDRs are defined as the complementarity determining region amino acid sequences of an antibody which are the hypervariable regions of immunoglobulin heavy and light chains. See, e.g., Kabat et al, Sequences of Proteins of Immunological Interest, 4th Ed., U.S. Department of Health and Human Services, National Institutes of Health (1987). There are three heavy chain and three light chain CDRs (or CDR regions) in the variable portion of an immunoglobulin. Thus, “CDRs” as used herein refers to all three heavy chain CDRs, or all three light chain CDRs (or both all heavy and all light chain CDRs, if appropriate).
  • the structure and protein folding of the antibody may mean that other residues are considered part of the antigen binding region and would be understood to be so by a skilled person. See for example Chothia et al, (1989) Conformations of immunoglobulin hypervariable regions; Nature 342, p 877-883.
  • Coding sequence or "encoding nucleic acid” as used herein may mean refers to the nucleic acid (RNA or DNA molecule) that comprise a nucleotide sequence which encodes an antibody as set forth herein.
  • the coding sequence may also comprise a DNA sequence which encodes an RNA sequence.
  • the coding sequence may further include initiation and termination signals operably linked to regulatory elements including a promoter and polyadenylation signal capable of directing expression in the cells of an individual or mammal to whom the nucleic acid is administered.
  • the coding sequence may further include sequences that encode signal peptides.
  • “Complement” or “complementary” as used herein may mean a nucleic acid may mean Watson-Crick (e.g., A-T/U and C-G) or Hoogsteen base pairing between nucleotides or nucleotide analogs of nucleic acid molecules.
  • Constant current as used herein to define a current that is received or experienced by a tissue, or cells defining said tissue, over the duration of an electrical pulse delivered to same tissue.
  • the electrical pulse is delivered from the electroporation devices described herein. This current remains at a constant amperage in said tissue over the life of an electrical pulse because the electroporation device provided herein has a feedback element, preferably having instantaneous feedback.
  • the feedback element can measure the resistance of the tissue (or cells) throughout the duration of the pulse and cause the electroporation device to alter its electrical energy output (e.g., increase voltage) so current in same tissue remains constant throughout the electrical pulse (on the order of microseconds), and from pulse to pulse.
  • the feedback element comprises a controller.
  • “Current feedback” or “feedback” as used herein may be used interchangeably and may mean the active response of the provided electroporation devices, which comprises measuring the current in tissue between electrodes and altering the energy output delivered by the EP device accordingly in order to maintain the current at a constant level.
  • This constant level is preset by a user prior to initiation of a pulse sequence or electrical treatment.
  • the feedback may be accomplished by the electroporation component, e.g., controller, of the electroporation device, as the electrical circuit therein is able to continuously monitor the current in tissue between electrodes and compare that monitored current (or current within tissue) to a preset current and continuously make energy-output adjustments to maintain the monitored current at preset levels.
  • the feedback loop may be instantaneous as it is an analog closed-loop feedback.
  • Decentralized current as used herein may mean the partem of electrical currents delivered from the various needle electrode arrays of the electroporation devices described herein, wherein the patterns minimize, or preferably eliminate, the occurrence of
  • Electrodeation electrospray
  • electro-kinetic enhancement electrospray enhancement
  • pores microscopic pathways
  • biomolecules such as plasmids, oligonucleotides, siRNA, drugs, ions, and water to pass from one side of the cellular membrane to the other.
  • Endogenous antibody as used herein may refer to an antibody that is generated in a subject that is administered an effective dose of an antigen for induction of a humoral immune response.
  • “Feedback mechanism” as used herein may refer to a process performed by either software or hardware (or firmware), which process receives and compares the impedance of the desired tissue (before, during, and/or after the delivery of pulse of energy) with a present value, preferably current, and adjusts the pulse of energy delivered to achieve the preset value.
  • a feedback mechanism may be performed by an analog closed loop circuit.
  • “Fragment” may mean a polypeptide fragment of an antibody that is function, i.e., can bind to desired target and have the same intended effect as a full length antibody.
  • a fragment of an antibody may be 100% identical to the full length except missing at least one amino acid from the N and/or C terminal, in each case with or without signal peptides and/or a methionine at position 1.
  • Fragments may comprise 20% or more, 25% or more, 30% or more, 35% or more, 40% or more, 45% or more, 50% or more, 55% or more, 60% or more, 65% or more, 70% or more, 75% or more, 80% or more, 85% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, 99% or more percent of the length of the particular full length antibody, excluding any heterologous signal peptide added.
  • the fragment may comprise a fragment of a polypeptide that is 95% or more, 96% or more, 97% or more, 98% or more or 99% or more identical to the antibody and additionally comprise an N terminal methionine or heterologous signal peptide which is not included when calculating percent identity. Fragments may further comprise an N terminal methionine and/or a signal peptide such as an immunoglobulin signal peptide, for example an IgE or IgG signal peptide. The N terminal methionine and/or signal peptide may be linked to a fragment of an antibody.
  • a fragment of a nucleic acid sequence that encodes an antibody may be 100% identical to the full length except missing at least one nucleotide from the 5' and/or 3' end, in each case with or without sequences encoding signal peptides and/or a methionine at position 1.
  • Fragments may comprise 20% or more, 25% or more, 30% or more, 35% or more, 40% or more, 45% or more, 50% or more, 55% or more, 60% or more, 65% or more, 70% or more, 75% or more, 80% or more, 85% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, 99% or more percent of the length of the particular full length coding sequence, excluding any
  • the fragment may comprise a fragment that encode a polypeptide that is 95% or more, 96% or more, 97% or more, 98% or more or 99% or more identical to the antibody and additionally optionally comprise sequence encoding an N terminal methionine or heterologous signal peptide which is not included when calculating percent identity. Fragments may further comprise coding sequences for an N terminal methionine and/or a signal peptide such as an immunoglobulin signal peptide, for example an IgE or IgG signal peptide. The coding sequence encoding the N terminal methionine and/or signal peptide may be linked to a fragment of coding sequence.
  • Genetic construct refers to the DNA or RNA molecules that comprise a nucleotide sequence which encodes a protein, such as an antibody.
  • the genetic construct may also refer to a DNA molecule which transcribes an RNA.
  • the coding sequence includes initiation and termination signals operably linked to regulatory elements including a promoter and polyadenylation signal capable of directing expression in the cells of the individual to whom the nucleic acid molecule is administered.
  • the term “expressible form” refers to gene constructs that contain the necessary regulatory elements operable linked to a coding sequence that encodes a protein such that when present in the cell of the individual, the coding sequence will be expressed.
  • Identity as used herein in the context of two or more nucleic acids or polypeptide sequences, may mean that the sequences have a specified percentage of residues that are the same over a specified region. The percentage may be calculated by optimally aligning the two sequences, comparing the two sequences over the specified region, determining the number of positions at which the identical residue occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the specified region, and multiplying the result by 100 to yield the percentage of sequence identity.
  • the residues of single sequence are included in the denominator but not the numerator of the calculation.
  • thymine (T) and uracil (U) may be considered equivalent.
  • Identity may be performed manually or by using a computer sequence algorithm such as BLAST or BLAST 2.0.
  • “Impedance” as used herein may be used when discussing the feedback mechanism and can be converted to a current value according to Ohm's law, thus enabling comparisons with the preset current.
  • Immuno response may mean the activation of a host's immune system, e.g., that of a mammal, in response to the introduction of one or more nucleic acids and/or peptides.
  • the immune response can be in the form of a cellular or humoral response, or both.
  • Nucleic acid or “oligonucleotide” or “polynucleotide” as used herein may mean at least two nucleotides covalently linked together.
  • the depiction of a single strand also defines the sequence of the complementary strand.
  • a nucleic acid also encompasses the complementary strand of a depicted single strand.
  • Many variants of a nucleic acid may be used for the same purpose as a given nucleic acid.
  • a nucleic acid also encompasses substantially identical nucleic acids and complements thereof.
  • a single strand provides a probe that may hybridize to a target sequence under stringent hybridization conditions.
  • a nucleic acid also encompasses a probe that hybridizes under stringent hybridization conditions.
  • Nucleic acids may be single stranded or double stranded, or may contain portions of both double stranded and single stranded sequence.
  • the nucleic acid may be DNA, both genomic and cDNA, RNA, or a hybrid, where the nucleic acid may contain combinations of deoxyribo- and ribo-nucleotides, and combinations of bases including uracil, adenine, thymine, cytosine, guanine, inosine, xanthine hypoxanthine, isocytosine and isoguanine.
  • Nucleic acids may be obtained by chemical synthesis methods or by recombinant methods.
  • “Operably linked” as used herein may mean that expression of a gene is under the control of a promoter with which it is spatially connected.
  • a promoter may be positioned 5' (upstream) or 3' (downstream) of a gene under its control.
  • the distance between the promoter and a gene may be approximately the same as the distance between that promoter and the gene it controls in the gene from which the promoter is derived. As is known in the art, variation in this distance may be accommodated without loss of promoter function.
  • a “peptide,” “protein,” or “polypeptide” as used herein can mean a linked sequence of amino acids and can be natural, synthetic, or a modification or combination of natural and synthetic.
  • Promoter may mean a synthetic or naturally-derived molecule which is capable of conferring, activating or enhancing expression of a nucleic acid in a cell.
  • a promoter may comprise one or more specific transcriptional regulatory sequences to further enhance expression and/or to alter the spatial expression and/or temporal expression of same.
  • a promoter may also comprise distal enhancer or repressor elements, which can be located as much as several thousand base pairs from the start site of transcription.
  • a promoter may be derived from sources including viral, bacterial, fungal, plants, insects, and animals.
  • a promoter may regulate the expression of a gene component constitutively, or differentially with respect to cell, the tissue or organ in which expression occurs or, with respect to the developmental stage at which expression occurs, or in response to external stimuli such as physiological stresses, pathogens, metal ions, or inducing agents.
  • promoters include the bacteriophage T7 promoter, bacteriophage T3 promoter, SP6 promoter, lac operator-promoter, tac promoter, SV40 late promoter, SV40 early promoter, RSV-LTR promoter, CMV IE promoter, SV40 early promoter or SV 40 late promoter and the CMV IE promoter.
  • Signal peptide and leader sequence are used interchangeably herein and refer to an amino acid sequence that can be linked at the amino terminus of a protein set forth herein. Signal peptides/leader sequences typically direct localization of a protein.
  • peptides/leader sequences used herein preferably facilitate secretion of the protein from the cell in which it is produced.
  • Signal peptides/leader sequences are often cleaved from the remainder of the protein, often referred to as the mature protein, upon secretion from the cell.
  • Signal peptides/leader sequences are linked at the N terminus of the protein.
  • Stringent hybridization conditions may mean conditions under which a first nucleic acid sequence (e.g., probe) will hybridize to a second nucleic acid sequence (e.g., target), such as in a complex mixture of nucleic acids. Stringent conditions are sequence dependent and will be different in different circumstances. Stringent conditions may be selected to be about 5-10°C lower than the thermal melting point (T m ) for the specific sequence at a defined ionic strength pH. The Tm may be the temperature (under defined ionic strength, pH, and nucleic concentration) at which 50% of the probes complementary to the target hybridize to the target sequence at equilibrium (as the target sequences are present in excess, at Tm, 50% of the probes are occupied at equilibrium).
  • T m thermal melting point
  • Stringent conditions may be those in which the salt concentration is less than about 1.0 M sodium ion, such as about 0.01- 1.0 M sodium ion concentration (or other salts) at pH 7.0 to 8.3 and the temperature is at least about 30°C for short probes (e.g., about 10-50 nucleotides) and at least about 60°C for long probes (e.g., greater than about 50 nucleotides). Stringent conditions may also be achieved with the addition of destabilizing agents such as formamide. For selective or specific hybridization, a positive signal may be at least 2 to 10 times background hybridization.
  • Exemplary stringent hybridization conditions include the following: 50% formamide, 5x SSC, and 1% SDS, incubating at 42°C, or, 5x SSC, 1% SDS, incubating at 65°C, with wash in 0.2x SSC, and 0.1% SDS at 65°C.
  • a mammal e.g., cow, pig, camel, llama, horse, goat, rabbit, sheep, hamsters, guinea pig, cat, dog, rat, and mouse
  • a non-human primate for example, a monkey, such as a cynomolgous or rhesus monkey, chimpanzee, etc
  • the subject may be a human or a non-human.
  • the subject or patient may be undergoing other forms of
  • Substantially complementary as used herein may mean that a first sequence is at least 60%, 65%, 70%, 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identical to the complement of a second sequence over a region of 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100 or more nucleotides or amino acids, or that the two sequences hybridize under stringent hybridization conditions.
  • Substantially identical as used herein may mean that a first and second sequence are at least 60%, 65%, 70%, 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%,or 99% over a region of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1100 or more nucleotides or amino acids, or with respect to nucleic acids, if the first sequence is substantially complementary to the complement of the second sequence.
  • Synthetic antibody refers to an antibody that is encoded by the recombinant nucleic acid sequence described herein and is generated in a subject.
  • Treatment can mean protecting of a subject from a disease through means of preventing, suppressing, repressing, or completely eliminating the disease.
  • Preventing the disease involves administering a vaccine of the present invention to a subject prior to onset of the disease.
  • Suppressing the disease involves administering a vaccine of the present invention to a subject after induction of the disease but before its clinical appearance.
  • Repressing the disease involves administering a vaccine of the present invention to a subject after clinical appearance of the disease.
  • Variant used herein with respect to a nucleic acid may mean (i) a portion or fragment of a referenced nucleotide sequence; (ii) the complement of a referenced nucleotide sequence or portion thereof; (iii) a nucleic acid that is substantially identical to a referenced nucleic acid or the complement thereof; or (iv) a nucleic acid that hybridizes under stringent conditions to the referenced nucleic acid, complement thereof, or sequences substantially identical thereto.
  • Variant with respect to a peptide or polypeptide that differs in amino acid sequence by the insertion, deletion, or conservative substitution of amino acids, but retain at least one biological activity.
  • Variant may also mean a protein with an amino acid sequence that is substantially identical to a referenced protein with an amino acid sequence that retains at least one biological activity.
  • a conservative substitution of an amino acid i.e., replacing an amino acid with a different amino acid of similar properties (e.g., hydrophilicity, degree and distribution of charged regions) is recognized in the art as typically involving a minor change. These minor changes can be identified, in part, by considering the hydropathic index of amino acids, as understood in the art. Kyte et al, J. Mol. Biol.
  • the hydropathic index of an amino acid is based on a consideration of its hydrophobicity and charge. It is known in the art that amino acids of similar hydropathic indexes can be substituted and still retain protein function. In one aspect, amino acids having hydropathic indexes of ⁇ 2 are substituted.
  • the hydrophilicity of amino acids can also be used to reveal substitutions that would result in proteins retaining biological function. A consideration of the hydrophilicity of amino acids in the context of a peptide permits calculation of the greatest local average hydrophilicity of that peptide, a useful measure that has been reported to correlate well with antigenicity and immunogenicity.
  • U.S. Patent No. 4,554, 101 incorporated fully herein by reference.
  • substitutions can result in peptides retaining biological activity, for example immunogenicity, as is understood in the art.
  • Substitutions may be performed with amino acids having hydrophilicity values within ⁇ 2 of each other. Both the hyrophobicity index and the hydrophilicity value of amino acids are influenced by the particular side chain of that amino acid. Consistent with that observation, amino acid substitutions that are compatible with biological function are understood to depend on the relative similarity of the amino acids, and particularly the side chains of those amino acids, as revealed by the hydrophobicity, hydrophilicity, charge, size, and other properties.
  • a variant may be a nucleic acid sequence that is substantially identical over the full length of the full gene sequence or a fragment thereof.
  • the nucleic acid sequence may be 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical over the full length of the gene sequence or a fragment thereof.
  • a variant may be an amino acid sequence that is substantially identical over the full length of the amino acid sequence or fragment thereof.
  • the amino acid sequence may be 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical over the full length of the amino acid sequence or a fragment thereof.
  • Vector as used herein may mean a nucleic acid sequence containing an origin of replication.
  • a vector may be a plasmid, bacteriophage, bacterial artificial chromosome or yeast artificial chromosome.
  • a vector may be a DNA or RNA vector.
  • a vector may be either a self-replicating extrachromosomal vector or a vector which integrates into a host genome.
  • each intervening number there between with the same degree of precision is explicitly contemplated.
  • the numbers 7 and 8 are contemplated in addition to 6 and 9, and for the range 6.0-7.0, the number 6.0, 6.1, 6.2, 6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, and 7.0 are explicitly contemplated.
  • the present invention provides a combination of a composition that elicits an immune response in a mammal against a MAYV antigen with a composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody can be administered to a subject in need thereof to facilitate in vivo expression and formation of a synthetic anti- MAYV antibody.
  • the present invention relates to a combination of a first composition that elicits an immune response in a mammal against a MAYV antigen and a second composition comprising a recombinant nucleic acid sequence encoding an anti- MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the first composition comprises a nucleic acid encoding one or more MAYV antigens.
  • the first composition comprises a nucleic acid vaccine, such as a DNA vaccine.
  • the first composition comprises a protein antigen, such as a MAYV antigen.
  • the second composition comprises a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof. The second composition, when administered to a subject in need thereof, can result in the generation of a synthetic anti-MAYV antibody in the subject.
  • the synthetic antibody can bind a MAYV antigen present in the subject. Such binding can neutralize the antigen, block recognition of the antigen by another molecule, for example, a protein or nucleic acid, and elicit or induce an immune response to the antigen.
  • the synthetic antibody can treat, prevent, and/or protect against MAYV infection or MAYV associated disease in the subject administered the composition.
  • the synthetic antibody by binding the MAYV antigen can treat, prevent, and/or protect against MAYV infection in the subject administered the composition.
  • the synthetic antibody can promote survival of the subject administered the composition.
  • the synthetic antibody can provide at least about 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 100% survival of the subject administered the composition. In other embodiments, the synthetic antibody can provide at least about 65%, 66%, 67%, 68%, 69%, 70%, 71%, 72%, 73%, 74%, 75%, 76%, 77%, 78%, 79%, or 80% survival of the subject administered the composition.
  • nucleic acid vaccines that are capable of generating in a mammal an immune response against a MAYV antigen.
  • the nucleic acid vaccines are comprised of a nucleotide sequence capable of expressing a consensus antigen in the mammal and a pharmaceutically acceptable excipient.
  • the nucleic acid vaccine is a DNA plasmid vaccine.
  • the DNA plasmid is comprised of a promoter operably linked to a coding sequence that encodes the consensus MAYV antigen.
  • the compositions of the invention when administered, generate an immediate and persistent immune responses.
  • the first composition comprising a nucleic acid encoding one or more MAYV antigens generates a persistent immune response.
  • the second composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof generates an immediate immune response.
  • the immune response is an anti-MAYV immune response.
  • the MAYV antigens described herein can be used to induce broad immunity against multiple subtypes or serotypes of Mayaro virus.
  • the MAYV antigen includes a MAYV capsid (CA) protein or MAYV-envelope (ENV) protein, a consensus thereof, a variant thereof, a fragment thereof or a combination thereof.
  • the MAYV antigen includes MAYV-CA, MAYV -El, MAYV-E2, MAYV-E3, MAYV-6K, a consensus thereof, a variant thereof, a fragment thereof or any combination thereof.
  • antigen includes MAYV-E3 and MAYV-E2 or MAYV -El and MAYV-E2.
  • antigen includes MAYV-E3, MAYV-E2, MAYV-6K and MAYV -El.
  • sequences of the MAYV antigen include SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116 and variants thereof, and fragments of SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116, and variants thereof, optionally including a signal peptide such as for example an IgE or IgG signal peptide.
  • the immunogens may comprise a signal peptide from a different protein such as an immunoglobulin protein, for example an IgE signal peptide or an IgG signal peptide.
  • the MAYV antigen linked to a signal peptide may comprise a sequence of SEQ ID NOs: 118, 120, 122, 124, 126, 128, 130, and fragments or variants thereof.
  • Fragments of a full-length MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the amino sequences set forth below
  • the MAYV antigen comprises MAYV-CA, a consensus thereof, a variant thereof, or a fragment thereof.
  • the MAYV-CA antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104.
  • the MAYV antigen comprises a fragment of a MAYV-CA.
  • the fragment of MAYV-CA can comprise a fragment of SEQ ID NO: 104.
  • the fragment of a MAYV-CA antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104.
  • the fragment of MAYV-CA can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 104 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 104.
  • the MAYV antigen comprises MAYV-El, a consensus thereof, a variant thereof, or a fragment thereof.
  • the MAYV-El antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106.
  • the MAYV antigen comprises a fragment of a MAYV-El.
  • the fragment of MAYV-El can comprise a fragment of SEQ ID NO:106.
  • the fragment of a MAYV-El antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106.
  • the fragment of MAYV-El can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at least 340 amino acids, at
  • the MAYV antigen comprises MAYV-E2, a consensus thereof, a variant thereof, or a fragment thereof.
  • the MAYV-E2 antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108.
  • the MAYV antigen comprises a fragment of a MAYV-E2.
  • the fragment of MAYV-E2 can comprise a fragment of SEQ ID NO: 108.
  • the fragment of a MAYV-E2 antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108.
  • the fragment of MAYV-E2 can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 108 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 108.
  • the MAYV antigen comprises MAYV-E3, a consensus thereof, a variant thereof, or a fragment thereof.
  • the MAYV-E3 antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 110.
  • the MAYV antigen comprises a fragment of a MAYV-E3.
  • the fragment of MAYV-E3 can comprise a fragment of SEQ ID NO:l 10.
  • the fragment of a MAYV-E3 antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 110.
  • the fragment of MAYV-E3 can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at least 340
  • the MAYV antigen comprises MAYV-6K, a consensus thereof, a variant thereof, or a fragment thereof.
  • the MAYV-6K antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 112.
  • the MAYV antigen comprises a fragment of a MAYV-6K.
  • the fragment of MAYV-6K can comprise a fragment of SEQ ID NO: 112.
  • the fragment of a MAYV-6K antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 112.
  • the fragment of MAYV-6K can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 112 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 112.
  • the MAYV antigen comprises MAYV-E3 and MAYV-E2 (MAYV-E3+E2), a consensus thereof, a variant thereof, or a fragment thereof.
  • the MAYV-E3+E2 antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO:l 14.
  • the MAYV antigen comprises a fragment of a MAYV-E3+E2.
  • the fragment of MAYV-E3+E2 can comprise a fragment of SEQ ID NO: 114.
  • the fragment of a MAYV- E3+E2 antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114.
  • the fragment of MAYV-E3+E2 can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at
  • the MAYV antigen is a MAYV-envelope (ENV) antigen.
  • the MAYV -ENV antigen comprises MAYV-E3, MAYV-E2, MAYV-6K, and MAYV -El, a consensus thereof, a variant thereof, or a fragment thereof.
  • the MAYV -ENV antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116.
  • the MAYV antigen comprises a fragment of a MAYV -ENV.
  • the fragment of MAYV -ENV can comprise a fragment of SEQ ID NO: 1 16.
  • the fragment of a MAYV-ENV antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116.
  • the fragment of MAYV-ENV can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 1 10 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at least
  • the MAYV antigen further comprises a protease sequence.
  • MAYV-E3+E2 comprises a protease sequence between MAYV-E3 and MAYV-E2.
  • MAYV-ENV comprises a proteinase a protease sequence between two or more of MAYV-E3, MAYV-E2, MAYV-6K and MAYV- El .
  • the protease sequence is a native protease sequence.
  • the protease sequence is a heterologous protease sequence.
  • the protease sequence is a furin protease sequence.
  • the furin protease sequence comprises the amino acid sequence RGRKRRS (SEQ ID NO: 126).
  • coding sequences of antigens capable of eliciting an immune response against one or more MAYV subtypes. Coding sequences encoding the proteins set forth herein may be generated using routine methods. Also described herein are isolated nucleic acids comprising nucleic acid sequences that encode MAYV antigens.
  • the antigen may be a MAYV antigen comprising CA protein El, E2, E3, 6K, a consensus thereof, a variant thereof, a fragment thereof or a combination thereof.
  • the MAYV antigen may contain at least one antigenic epitope that may be effective against particular MAYV immunogens against which an immune response can be induced.
  • Nucleic acid sequences encoding a MAYV -El antigen, a MAYV-E2 antigen, a MAYV-E3 antigen, a MAYV-6K immunogen and a MAYV-CA antigen can be generated based upon the amino acid sequences disclosed.
  • the nucleic acid sequences may optionally comprise coding sequences that encode a signal peptide such as for example an IgE or IgG signal peptide.
  • the nucleic acid sequence may encode a full-length MAYV -El antigen, a full-length MAYV-E2 antigen, a full-length MAYV-E3 antigen, a full-length MAYV-6K antigen or a full-length MAYV-CA antigen.
  • the MAYV antigen may be a MAYV polyprotein.
  • the nucleic acid may encode a full length MAYV polyprotein.
  • the nucleic acid sequence may encode MAYV-E3 and MAYV-E2 (MAYV- E3+E2).
  • the nucleic acid sequence may encode MAYV-envelope (ENV).
  • MAYV-ENV comprise MAYV-E3, MAYV-E2, MAYV-6K and MAYV -El.
  • the nucleic acid sequences may comprise a sequence that encodes one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116, a variant thereof, a fragment thereof or any combination thereof.
  • the nucleic acid sequence comprises an RNA sequence encoding a full-length consensus MAYV immunogen sequence described herein.
  • nucleic acids may comprise an RNA sequence encoding one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116, a variant thereof, a fragment thereof or any combination thereof.
  • the nucleic acid sequence may encode a fragment of a MAYV antigen.
  • Fragments of a full-length MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the amino acid sequences set forth herein.
  • Fragments of a nucleic acid encoding a MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the nucleic acid sequences set forth herein.
  • the nucleic acid sequence may encode a protein homologous to a MAYV antigen.
  • the nucleic acid sequence may encode a protein homologous to MAYV-E1, a protein homologous to MAYV-E2, a protein homologous to MAYV-E3, a protein homologous to MAYV-6K or a protein homologous to MAYV-CA.
  • the MAYV antigen may be homologous to a MAYV polyprotein.
  • the nucleic acid may encode a protein homologous to a MAYV polyprotein.
  • the nucleic acid sequence may encode a protein homologous to MAYV-E3 and MAYV-E2 (MAYV-E3+E2).
  • the nucleic acid sequence may encode a protein homologous to MAYV- envelope (ENV).
  • MAYV-ENV comprises MAYV-E3, MAYV-E2, MAYV-6K and MAYV-E1.
  • Nucleic acid sequence may comprise a sequence that encodes a protein homologous to one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, and 116.
  • the nucleic acid sequence may encode a protein homologous to a MAYV antigen.
  • the nucleic acid sequence may encode a protein homologous to MAYV-E1, a protein homologous to MAYV-E2, a protein homologous to MAYV-E3, a protein homologous to MAYV-6K or a protein homologous to MAYV-CA.
  • the MAYV antigen may be homologous to a MAYV polyprotein.
  • the nucleic acid may encode a protein homologous to a MAYV polyprotein.
  • the nucleic acid sequence may encode a protein homologous to MAYV-E3 and MAYV-E2 (MAYV-E3+E2).
  • the nucleic acid sequence may encode a protein homologous to MAYV- envelope (ENV).
  • MAYV-ENV comprises MAYV-E3, MAYV-E2, MAYV-6K and MAYV-E1.
  • Nucleic acid sequence may comprise a sequence that encodes a protein homologous to one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, and 116. Fragments of a protein homologous to a MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the amino acid sequences set forth herein.
  • Fragments of a nucleic acid encoding a protein homologous to a MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the nucleic acid sequences set forth herein.
  • the nucleic acid encodes an antigen comprising MAYV-CA.
  • MAYV-CA can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 104.
  • MAYV-CA can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 105.
  • the MAYV-CA antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 105.
  • the MAYV-CA antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104.
  • the nucleic acid sequence encodes a fragment of MAYV-CA.
  • the fragment of MAYV-CA can comprise a fragment of SEQ ID NO: 104.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 105 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 105.
  • the fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 105 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 105.
  • the nucleic acid encodes an antigen comprising MAYV-El.
  • MAYV-El can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 106.
  • MAYV-El can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 107.
  • the MAYV-El antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 107.
  • the MAYV-El antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106.
  • the nucleic acid sequence encodes a fragment of MAYV-El.
  • the fragment of MAYV-El can comprise a fragment of SEQ ID NO: 106.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 107 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 107.
  • the fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, at least 1275 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence
  • the nucleic acid encodes an antigen comprising MAYV-E2.
  • MAYV-E2 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 108.
  • MAYV-E2 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 109.
  • the MAYV-E2 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 109.
  • the MAYV-E2 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108.
  • the nucleic acid sequence encodes a fragment of MAYV-E2.
  • the fragment of MAYV-E2 can comprise a fragment of SEQ ID NO: 108.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 109 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 109.
  • the fragment can comprise at least 10, at least 20, at least 30, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 110, at least 120, at least 130, at least 140, at least 150, at least 160, at least 170, at least 180, at least 190 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 109 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 109.
  • the nucleic acid encodes an antigen comprising MAYV-E3.
  • MAYV-E3 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 110.
  • MAYV-E3 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 111.
  • the MAYV-E3 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 111.
  • the MAYV-E3 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: l 10.
  • the nucleic acid sequence encodes a fragment of MAYV-E3.
  • the fragment of MAYV-E3 can comprise a fragment of SEQ ID NO: 110.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 110.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 111 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 111.
  • the fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in S
  • the nucleic acid encodes an antigen comprising MAYV-6K.
  • MAYV-6K can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 112.
  • MAYV-6K can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 113.
  • the MAYV-6K antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 113.
  • the MAYV-6K antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: l 12.
  • the nucleic acid sequence encodes a fragment of MAYV-6K.
  • the fragment of MAYV-6K can comprise a fragment of SEQ ID NO: 112.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 112.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 113 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 113.
  • the fragment can comprise at least 10, at least 20, at least 30, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 110, at least 120, at least 130, at least 140, at least 150, at least 160, at least 170, at least 180, at least 190, at least 200 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 113 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 113.
  • the nucleic acid encodes an antigen comprising MAYV-E2+E3.
  • MAYV-E2+E3 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 114.
  • MAYV-E2+E3 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115.
  • the MAYV-E2+E3 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115.
  • the MAYV-E2+E3 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114.
  • the nucleic acid sequence encodes a fragment of MAYV-E2+E3.
  • the fragment of MAYV-E2+E3 can comprise a fragment of SEQ ID NO: 114.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 115 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 115.
  • the fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, at least 1300, at least 1325, at least 1350, at least 1375, at least 1400, at
  • the nucleic acid encodes an antigen comprising MAYV-E2+E3.
  • MAYV-E2+E3 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 114.
  • MAYV-E2+E3 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115.
  • the MAYV-E2+E3 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115.
  • the MAYV-E2+E3 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114.
  • the nucleic acid sequence encodes a fragment of MAYV-E2+E3.
  • the fragment of MAYV-E2+E3 can comprise a fragment of SEQ ID NO: 114.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 1 15 or a fragment of a nucleic acid sequence at having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 1 15.
  • the fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1 100, at least 1 125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, at least 1300, at least 1325, at least 1350, at least 1375, at least 1400,
  • the nucleic acid encodes an antigen comprising MAYV-ENV.
  • MAYV-ENV can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 1 16.
  • MAYV-ENV can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 117.
  • the MAYV-ENV antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 1 17.
  • the MAYV-ENV antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116.
  • the nucleic acid sequence encodes a fragment of MAYV-ENV.
  • the fragment of MAYV-ENV can comprise a fragment of SEQ ID NO: 116.
  • the nucleic acid encodes a fragment of a protein having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116.
  • the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 1 17 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 1 17.
  • the fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1 175, at least 1200, at least 1225, at least 1250, at least 1300, at least 1325, at least 1350, at least 1375, at least 1400, at
  • the vaccine may a nucleic acid molecule as discussed above.
  • the vaccine may comprise a plurality of the nucleic acid molecules, or combinations thereof.
  • the vaccine may be provided to induce a therapeutic or prophylactic immune response.
  • the vaccine can be a DNA vaccine.
  • DNA vaccines are disclosed in US Patent Nos. 5,593,972, 5,739,118, 5,817,637, 5,830,876, 5,962,428, 5,981,505, 5,580,859, 5,703,055, and 5,676,594, which are incorporated herein fully by reference.
  • the DNA vaccine can further comprise elements or reagents that inhibit it from integrating into the chromosome.
  • the vaccine can be an RNA of the one or more MAYV antigens.
  • the RNA vaccine can be introduced into the cell.
  • the vaccine can be an attenuated live vaccine, a vaccine using recombinant vectors to deliver antigen, subunit vaccines, and glycoprotein vaccines, for example, but not limited, the vaccines described in U.S. Patent Nos. : 4,510,245; 4,797,368; 4,722,848; 4,790,987;
  • the vaccine of the present invention can have features required of effective vaccines such as being safe so that the vaccine itself does not cause illness or death; being protective against illness; inducing neutralizing antibody; inducing protective T cell responses; and providing ease of administration, few side effects, biological stability, and low cost per dose.
  • the vaccine may further comprise a pharmaceutically acceptable excipient.
  • the pharmaceutically acceptable excipient may be functional molecules as vehicles, adjuvants, carriers, or diluents.
  • the pharmaceutically acceptable excipient may be a transfection facilitating agent, which may include surface active agents, such as immune-stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs, vesicles such as squalene and squalene, hyaluronic acid, lipids, liposomes, calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents.
  • ISCOMS immune-stimulating complexes
  • LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs, vesicles such as squalene and squalene, hyaluronic acid,
  • the transfection facilitating agent is a polyanion, poly cation, including poly-L- glutamate (LGS), or lipid.
  • the transfection facilitating agent is poly-L-glutamate, and more preferably, the poly-L-glutamate is present in the vaccine at a concentration less than 6 mg/ml.
  • the transfection facilitating agent may also include surface active agents such as immune-stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs and vesicles such as squalene and squalene, and hyaluronic acid may also be used administered in conjunction with the genetic construct.
  • ISCOMS immune-stimulating complexes
  • LPS analog including monophosphoryl lipid A
  • muramyl peptides muramyl peptides
  • quinone analogs and vesicles such as squalene and squalene
  • the DNA plasmid vaccines may also include a transfection facilitating agent such as lipids, liposomes, including lecithin liposomes or other liposomes known in the art, as a DNA-liposome mixture (see for example W09324640), calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents.
  • the transfection facilitating agent is a polyanion, poly cation, including poly-L-glutamate (LGS), or lipid.
  • the concentration of the transfection agent in the vaccine is less than 4 mg/ml, less than 2 mg/ml, less than 1 mg/ml, less than 0.750 mg/ml, less than 0.500 mg/ml, less than 0.250 mg/ml, less than 0.100 mg/ml, less than 0.050 mg/ml, or less than 0.010 mg/ml.
  • the pharmaceutically acceptable excipient may be one or more adjuvants.
  • An adjuvant may be other genes that are expressed from the same or from an alternative plasmid or are delivered as proteins in combination with the plasmid above in the vaccine.
  • the one or more adjuvants may be proteins and/or nucleic acid molecules that encode proteins selected from the group consisting of: CCL20, a-interferon (IFN- a), ⁇ -interferon (IFN- ⁇ ), ⁇ -interferon, platelet derived growth factor (PDGF), TNFa, ⁇ , GM-CSF, epidermal growth factor (EGF), cutaneous T cell-attracting chemokine (CTACK), epithelial thymus-expressed chemokine (TECK), mucosae-associated epithelial chemokine (MEC), IL-12, IL-15 including IL-15 having the signal sequence or coding sequence that encodes the signal sequence deleted and optionally including a different signal peptide such as that from Ig
  • the adjuvant may be one or more proteins and/or nucleic acid molecules that encode proteins selected from the group consisting of: CCL-20, IL-12, IL-15, IL-28, CTACK, TECK, MEC or RANTES.
  • IL-12 constructs and sequences are disclosed in PCT application no. PCT/US 1997/019502 and corresponding US Application Serial No. 08/956,865, and U.S. Provisional Application Serial No 61/569600 filed December 12, 2011, which are each incorporated herein by reference.
  • Examples of IL-15 constructs and sequences are disclosed in PCT application no. PCT/US04/18962 and corresponding US Application Serial No. 10/560,650, and in PCT application no. PCT/US07/00886 and corresponding U.S. Application Serial No. 12/160,766, and in PCT application no.
  • PCT/US 10/048827 which are each incorporated herein by reference.
  • Examples of IL-28 constructs and sequences are disclosed in PCT application no. PCT/US09/039648 and corresponding U.S. Application Serial No. 12/936,192, which are each incorporated herein by reference.
  • Examples of RANTES and other constructs and sequences are disclosed in PCT application no. PCT/US 1999/004332 and corresponding U.S. Application Serial No. and 09/622452, which are each incorporated herein by reference.
  • Other examples of RANTES constructs and sequences are disclosed in PCT application no. PCT/US 11/024098, which is incorporated herein by reference.
  • Examples of RANTES and other constructs and sequences are disclosed in PCT application no. PCT/US 1999/004332 and corresponding U.S.
  • PCT/US 11/024098 which is incorporated herein by reference.
  • chemokines CTACK, TECK and MEC constructs and sequences are disclosed in PCT application no. PCT/US2005/042231 and corresponding U.S. Application Serial No. 11/719,646, which are each incorporated herein by reference.
  • OX40 and other immunomodulators are disclosed in U.S. Application Serial No. 10/560,653, which is incorporated herein by reference.
  • Examples of DR5 and other immunomodulators are disclosed in U.S. Application Serial No. 09/622452, which is incorporated herein by reference.
  • the vaccine may further comprise a genetic vaccine facilitator agent as described in U.S. Serial No. 021,579 filed April 1, 1994, which is fully incorporated by reference.
  • the vaccine may comprise the consensus antigens and plasmids at quantities of from about 1 nanogram to 100 milligrams; about 1 microgram to about 10 milligrams; or preferably about 0.1 microgram to about 10 milligrams; or more preferably about 1 milligram to about 2 milligram.
  • pharmaceutical compositions according to the present invention comprise about 5 nanogram to about 1000 micrograms of DNA.
  • the pharmaceutical compositions contain about 10 nanograms to about 800 micrograms of DNA.
  • the pharmaceutical compositions contain about 0.1 to about 500 micrograms of DNA.
  • the pharmaceutical compositions contain about 1 to about 350 micrograms of DNA. In some preferred embodiments, the pharmaceutical compositions contain about 25 to about 250 micrograms, from about 100 to about 200 microgram, from about 1 nanogram to 100 milligrams; from about 1 microgram to about 10 milligrams; from about 0.1 microgram to about 10 milligrams; from about 1 milligram to about 2 milligram, from about 5 nanogram to about 1000 micrograms, from about 10 nanograms to about 800 micrograms, from about 0.1 to about 500 micrograms, from about 1 to about 350 micrograms, from about 25 to about 250 micrograms, from about 100 to about 200 microgram of the consensus antigen or plasmid thereof.
  • compositions according to the present invention comprise at least 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 100 nanograms of DNA of the vaccine.
  • the pharmaceutical compositions can comprise at least 1, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95,100, 105, 110, 115, 120, 125, 130, 135, 140, 145, 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, 200, 205, 210, 215, 220, 225, 230, 235, 240, 245, 250, 255, 260, 265, 270, 275, 280, 285, 290, 295, 300, 305, 310, 315, 320, 325, 330, 335, 340, 345, 350, 355, 360, 365, 370, 375, 380, 3
  • the pharmaceutical composition can comprise at least 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8, 8.5, 9, 9.5 or 10 mg or more of DNA of the vaccine.
  • the pharmaceutical composition can comprise up to and including 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 100 nanograms of DNA of the vaccine.
  • the pharmaceutical composition can comprise up to and including 1 , 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 105, 110, 115, 120, 125, 130, 135, 140, 145, 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, 200, 205, 210, 215, 220, 225, 230, 235, 240, 245, 250, 255, 260, 265, 270, 275, 280, 285, 290, 295, 300, 305, 310, 315, 320, 325, 330, 335, 340, 345, 350, 355, 360, 365, 370, 375, 380, 385, 390, 395, 400, 405, 410, 415, 420, 425, 430, 435, 440, 445, 450, 455, 460, 465, 470, 475,
  • the pharmaceutical composition can comprise up to and including 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8, 8.5, 9, 9.5 or 10 mg of DNA of the vaccine.
  • the vaccine may be formulated according to the mode of administration to be used.
  • An injectable vaccine pharmaceutical composition may be sterile, pyrogen free and particulate free.
  • An isotonic formulation or solution may be used. Additives for isotonicity may include sodium chloride, dextrose, mannitol, sorbitol, and lactose.
  • the vaccine may comprise a vasoconstriction agent.
  • the isotonic solutions may include phosphate buffered saline.
  • Vaccine may further comprise stabilizers including gelatin and albumin.
  • the stabilizing may allow the formulation to be stable at room or ambient temperature for extended periods of time such as LGS or poly cations or polyanions to the vaccine formulation.
  • the vaccine may be stable for is stable at room temperature (25°C) for more than 1 week, in some embodiments for more than 2 weeks, in some embodiments for more than 3 weeks, in some embodiments for more than 4 weeks, in some embodiments for more than 5 weeks, and in some embodiments for more than 6 weeks.
  • the vaccine is stable for more than one month, more than 2 months, more than 3 months, more than 4 months, more than 5 months, more than 6 months, more than 7 months, more than 8 months, more than 9 months, more than 10 months, more than 11 months, or more than 12 months.
  • the vaccine is stable for more than 1 year, more than 2 years, more than years, or more than 5 years.
  • the vaccine is stable under refrigeration (2- 8°C).
  • the vaccine does not require frozen cold-chain.
  • a vaccine is stable if it retains its biological activity for a sufficient period to allow its intended use (e.g., to generate an immune response in a subject). For example, for vaccines that are to be stored, shipped, etc., it may be desired that the vaccines remain stable for months to years.
  • the immunogenic composition can induce an immune response in the subject administered the composition.
  • the induced immune response can be specific for a native antigen.
  • the induced immune response can be reactive with a native antigen related to the optimized consensus-encoded antigen.
  • related antigens include antigens having amino acid sequences having at least 90%, at least 91 %, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% homology to the amino acid sequence of the optimized consensus-encoded antigen.
  • related antigens include antigens encoded by nucleotide sequences having at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% homology to the optimized consensus nucleotide sequences disclosed herein.
  • the immunogenic composition can induce a humoral immune response in the subject administered the immunogenic composition.
  • the induced humoral immune response can be specific for a native antigen.
  • the induced humoral immune response can be reactive with the native antigen related to the optimized consensus-encoded antigen.
  • the humoral immune response can be induced in the subject administered the immunogenic composition by about 1.5-fold to about 16-fold, about 2-fold to about 12-fold, or about 3-fold to about 10-fold.
  • the humoral immune response can be induced in the subject administered the immunogenic composition by at least about 1.5-fold, at least about 2.0-fold, at least about 2.5-fold, at least about 3.0-fold, at least about 3.5-fold, at least about 4.0-fold, at least about 4.5-fold, at least about 5.0-fold, at least about 5.5-fold, at least about 6.0-fold, at least about 6.5-fold, at least about 7.0-fold, at least about 7.5-fold, at least about 8.0-fold, at least about 8.5-fold, at least about 9.0-fold, at least about 9.5-fold, at least about 10.0-fold, at least about 10.5-fold, at least about 11.0-fold, at least about 1 1.5-fold, at least about 12.0-fold, at least about 12.5- fold, at least about 13.0-fold, at least about 13.5 -fold, at least about 14.0-fold, at least about 14.5-fold, at least about 15.0-fold, at least about 15.5-fold, or at least about 16.0- fold as compared to a subject
  • the humoral immune response induced by the immunogenic composition can include an increased level of neutralizing antibodies associated with the subject administered the immunogenic composition as compared to a subject not administered the immunogenic composition.
  • the neutralizing antibodies can be specific for a native antigen related to the optimized consensus-encoded antigen.
  • the neutralizing antibodies can be reactive with the native antigen genetically related to the optimized consensus antigen.
  • the neutralizing antibodies can provide protection against and/or treatment of tumor growth, metastasis or tumor associated pathologies in the subject administered the immunogenic composition.
  • the humoral immune response induced by the immunogenic composition can include an increased level of IgG antibodies associated with the subject administered the
  • immunogenic composition as compared to a subject not administered the immunogenic composition.
  • IgG antibodies can be specific for the native antigen genetically related to the optimized consensus antigen.
  • These IgG antibodies can be reactive with the native antigen genetically related to the optimized consensus antigen.
  • the level of IgG antibody associated with the subject administered the immunogenic composition can be increased by about 1.5-fold to about 16-fold, about 2-fold to about 12-fold, or about 3-fold to about 10- fold as compared to the subject not administered the immunogenic composition.
  • the level of IgG antibody associated with the subject administered the immunogenic composition can be increased by at least about 1.5-fold, at least about 2.0-fold, at least about 2.5-fold, at least about 3.0-fold, at least about 3.5-fold, at least about 4.0-fold, at least about 4.5-fold, at least about 5.0-fold, at least about 5.5-fold, at least about 6.0-fold, at least about 6.5-fold, at least about 7.0-fold, at least about 7.5-fold, at least about 8.0-fold, at least about 8.5-fold, at least about 9.0-fold, at least about 9.5-fold, at least about 10.0-fold, at least about 10.5-fold, at least about 11.0-fold, at least about 11.5-fold, at least about 12.0-fold, at least about 12.5- fold, at least about 13.0-fold, at least about 13.5 -fold, at least about 14.0-fold, at least about 14.5-fold, at least about 15.0-fold, at least about 15.5-fold, or at least about 16.0-fold as compared to
  • the immunogenic composition can induce a cellular immune response in the subject administered the immunogenic composition.
  • the induced cellular immune response can be specific for a native antigen related to the optimized consensus-encoded antigen.
  • the induced cellular immune response can be reactive to the native antigen related to the optimized consensus-encoded antigen.
  • the induced cellular immune response can include eliciting a CD8 + T cell response.
  • the elicited CD8 + T cell response can be reactive with the native antigen genetically related to the optimized consensus antigen.
  • the elicited CD8 + T cell response can be polyfunctional.
  • the induced cellular immune response can include eliciting a CD8 + T cell response, in which the CD8 + T cells produce interferon-gamma (IFN- ⁇ ), tumor necrosis factor alpha (TNF-a), interleukin-2 (IL-2), or a combination of IFN- ⁇ and TNF-a.
  • IFN- ⁇ interferon-gamma
  • TNF-a tumor necrosis factor alpha
  • IL-2 interleukin-2
  • the induced cellular immune response can include an increased CD8 + T cell response associated with the subject administered the immunogenic composition as compared to the subject not administered the immunogenic composition.
  • the CD8 + T cell response associated with the subject administered the immunogenic composition can be increased by about 2-fold to about 30-fold, about 3 -fold to about 25 -fold, or about 4-fold to about 20-fold as compared to the subject not administered the immunogenic composition.
  • the CD8 + T cell response associated with the subject administered the immunogenic composition can be increased by at least about 1.5-fold, at least about 2.0-fold, at least about 3.0-fold, at least about 4.0-fold, at least about 5.0-fold, at least about 6.0-fold, at least about 6.5-fold, at least about 7.0-fold, at least about 7.5-fold, at least about 8.0-fold, at least about 8.5-fold, at least about 9.0-fold, at least about 9.5-fold, at least about 10.0-fold, at least about 10.5-fold, at least about 11.0-fold, at least about 11.5-fold, at least about 12.0-fold, at least about 12.5-fold, at least about 13.0- fold, at least about 13.5-fold, at least about 14.0-fold, at least about 14.5-fold, at least about 15.0-fold, at least about 16.0-fold, at least about 17.0-fold, at least about 18.0-fold, at least about 19.0-fold, at least about 20.0-fold, at least about 21.0-fold, at least about 22.0-fold,
  • the induced cellular immune response can include an increased frequency of
  • CD107a/IFNY/T-bet triple-positive CD8 T cells that are reactive against the native antigen.
  • the frequency of CD107a/IFNY/T-bet triple-positive CD8 T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, 14-fold, 15- fold, 16-fold, 17-fold, 18-fold, 19-fold, or 20-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
  • the induced cellular immune response can include an increased frequency of
  • CD107a/IFNY double-positive CD8 T cells that are reactive against the native antigen.
  • the frequency of CD107a/IFNY double-positive CD8 T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, or 14-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
  • the cellular immune response induced by the immunogenic composition can include eliciting a CD4 + T cell response.
  • the elicited CD4 + T cell response can be reactive with the native antigen genetically related to the optimized consensus antigen.
  • the elicited CD4 + T cell response can be polyfunctional.
  • the induced cellular immune response can include eliciting a CD4 + T cell response, in which the CD4 + T cells produce IFN- ⁇ , TNF-a, IL-2, or a combination of IFN- ⁇ and TNF-a.
  • the induced cellular immune response can include an increased frequency of CD4 + T cells that produce IFN- ⁇ .
  • the frequency of CD4 + IFN-y + T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, 14-fold, 15- fold, 16-fold, 17-fold, 18-fold, 19-fold, or 20-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
  • the induced cellular immune response can include an increased frequency of CD4 + T cells that produce TNF-a.
  • the frequency of CD4 + TNF-a + T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, 14-fold, 15- fold, 16-fold, 17-fold, 18-fold, 19-fold, 20-fold, 21-fold, or 22-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
  • the induced cellular immune response can include an increased frequency of CD4 + T cells that produce both IFN- ⁇ and TNF-a.
  • the frequency of CD4 + IFN-Y + TNF-a + associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 2.5-fold, 3.0-fold, 3.5-fold, 4.0-fold, 4.5-fold, 5.0-fold, 5.5-fold, 6.0-fold, 6.5- fold, 7.0-fold, 7.5-fold, 8.0-fold, 8.5-fold, 9.0-fold, 9.5-fold, 10.0-fold, 10.5-fold, 11.0-fold, 11.5-fold, 12.0-fold, 12.5-fold, 13.0-fold, 13.5-fold, 14.0-fold, 14.5-fold, 15.0-fold, 15.5-fold, 16.0-fold, 16.5-fold, 17.0-fold, 17.5-fold, 18.0-fold, 18.5-fold, 19.0-fold, 19.5-fold, 20.0-fold, 21 -fold, 22-fold, 23-fold 24-fold, 25-fold,
  • the immunogenic composition of the present invention can have features required of effective vaccines such as being safe so the vaccine itself does not cause illness or death; is protective against illness resulting from exposure to live pathogens such as viruses or bacteria; induces neutralizing antibody to prevent invention of cells; induces protective T cells against intracellular pathogens; and provides ease of administration, few side effects, biological stability, and low cost per dose.
  • the immunogenic composition can further induce an immune response when administered to different tissues such as the muscle or skin.
  • the immunogenic composition can further induce an immune response when administered via electroporation, or injection, or subcutaneously, or intramuscularly.
  • the present invention relates to a composition
  • a composition comprising a recombinant nucleic acid sequence encoding an antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the composition when administered to a subject in need thereof, can result in the generation of a synthetic antibody in the subject.
  • the synthetic antibody can bind a target molecule (i.e., an antigen) present in the subject. Such binding can neutralize the antigen, block recognition of the antigen by another molecule, for example, a protein or nucleic acid, and elicit or induce an immune response to the antigen.
  • the composition comprises a nucleotide sequence encoding a synthetic antibody. In one embodiment, the composition comprises a nucleic acid molecule comprising a first nucleotide sequence encoding a first synthetic antibody and a second nucleotide sequence encoding a second synthetic antibody. In one embodiment, the nucleic acid molecule comprises a nucleotide sequence encoding a cleavage domain.
  • the nucleic acid molecule comprises a nucleotide sequence encoding an anti- Mayaro virus (anti-MAYV) antibody.
  • the nucleotide sequence encoding an anti-MAYV antibody comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3, or a fragment of an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3. In one embodiment, the nucleotide sequence encoding an anti-MAYV antibody comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence as set forth in SEQ ID NO:l or 3 or a fragment of an amino acid sequence as set forth in SEQ ID NO: 1 or 3.
  • the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3 or a fragment of an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3.
  • the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence as set forth in SEQ ID NO: 1 or 3 or a fragment of an amino acid sequence as set forth in SEQ ID NO: 1 or 3.
  • the nucleotide sequence encoding an anti- MAYV antibody comprises one or more codon optimized nucleic acid sequences at least 90% homologous to SEQ ID NO: 2 or 4 or a fragment of a nucleic acid sequence at least 90% homologous to SEQ ID NO: 2 or 4. In one embodiment, the nucleotide sequence encoding an anti- MAYV antibody comprises one or more codon optimized nucleic acid sequences as set forth in SEQ ID NO: 2 or 4 or a fragment of a nucleic acid sequence as set forth in SEQ ID NO: 2 or 4.
  • the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences at least 90%) homologous to SEQ ID NO: 2 or 4 or a fragment of a DNA sequence at least 90% homologous to SEQ ID NO: 2 or 4 .
  • the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences as set forth in SEQ ID NO: 2 or 4 or a fragment of a DNA sequence as set forth in SEQ ID NO:2 or 4.
  • the composition comprises a nucleotide sequence encoding a synthetic MAYV heavy chain. In one embodiment, the composition comprises a nucleotide sequence encoding a synthetic MAYV light chain. In one embodiment, the composition comprises a nucleotide sequence encoding a synthetic MAYV antibody. In one embodiment, the sequence encoding a synthetic MAYV antibody comprises a first sequence encoding a synthetic MAYV heavy chain and a second sequence encoding a synthetic MAYV light chain.
  • the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16. In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs:5-16 or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs:5-16.
  • the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64. In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs: 29-64.
  • the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16.
  • the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs:5-16, or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs: 5- 16.
  • the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64.
  • the nucleotide sequence encoding a synthetic MAYV heavy chain one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs: 29-64.
  • the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28. In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs: 17-28 or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs: 17-28.
  • the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:65-100. In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs:65-100.
  • the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17- 28.
  • the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs: 17-28, or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs: 17-28.
  • the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:65-100.
  • the nucleotide sequence encoding a synthetic MAYV light chain one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs: 65-100.
  • composition of the invention can treat, prevent and/or protect against any disease, disorder, or condition associated with Mayaro virus infection.
  • the composition can treat, prevent, and or/protect against viral infection.
  • the composition can treat, prevent, and or/protect against condition associated with Mayaro virus infection.
  • the composition can result in the generation of the synthetic antibody in the subject within at least about 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, 6 hours, 7 hours, 8 hours, 9 hours, 10 hours, 11 hours, 12 hours, 13 hours, 14 hours, 15 hours, 20 hours, 25 hours, 30 hours, 35 hours, 40 hours, 45 hours, 50 hours, or 60 hours of administration of the composition to the subject.
  • the composition can result in generation of the synthetic antibody in the subject within at least about 1 day, 2 days, 3 days, 4 days, 5 days, 6 days, 7 days, 8 days, 9 days, or 10 days of administration of the composition to the subject.
  • the composition can result in generation of the synthetic antibody in the subject within about 1 hour to about 6 days, about 1 hour to about 5 days, about 1 hour to about 4 days, about 1 hour to about 3 days, about 1 hour to about 2 days, about 1 hour to about 1 day, about 1 hour to about 72 hours, about 1 hour to about 60 hours, about 1 hour to about 48 hours, about 1 hour to about 36 hours, about 1 hour to about 24 hours, about 1 hour to about 12 hours, or about 1 hour to about 6 hours of administration of the composition to the subject.
  • the composition when administered to the subject in need thereof, can result in the generation of the synthetic antibody in the subject more quickly than the generation of an endogenous antibody in a subject who is administered an antigen to induce a humoral immune response.
  • the composition can result in the generation of the synthetic antibody at least about 1 day, 2 days, 3 days, 4 days, 5 days, 6 days, 7 days, 8 days, 9 days, or 10 days before the generation of the endogenous antibody in the subject who was administered an antigen to induce a humoral immune response.
  • composition of the present invention can have features required of effective compositions such as being safe so that the composition does not cause illness or death; being protective against illness; and providing ease of administration, few side effects, biological stability and low cost per dose.
  • the composition can comprise a recombinant nucleic acid sequence.
  • the recombinant nucleic acid sequence can encode an anti-MAYV synthetic antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the antibody is described in more detail below.
  • the recombinant nucleic acid sequence can encode a MAYV antigen, a fragment thereof, a variant thereof, or a combination thereof.
  • the recombinant nucleic acid sequence can be a heterologous nucleic acid sequence.
  • the recombinant nucleic acid sequence can include one or more heterologous nucleic acid sequences.
  • the recombinant nucleic acid sequence can be an optimized nucleic acid sequence. Such optimization can increase or alter the immunogenicity of the antibody. Optimization can also improve transcription and/or translation. Optimization can include one or more of the following: low GC content leader sequence to increase transcription; mRNA stability and codon optimization; addition of a kozak sequence (e.g., GCC ACC) for increased translation; addition of an immunoglobulin (Ig) leader sequence encoding a signal peptide; addition of an internal IRES sequence and eliminating to the extent possible cis-acting sequence motifs (i.e., internal TATA boxes).
  • the recombinant nucleic acid sequence can include one or more recombinant nucleic acid sequence constructs.
  • the recombinant nucleic acid sequence construct can include one or more components, which are described in more detail below.
  • the recombinant nucleic acid sequence construct can include a heterologous nucleic acid sequence that encodes a heavy chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof.
  • the recombinant nucleic acid sequence construct can include a heterologous nucleic acid sequence that encodes a light chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof.
  • the recombinant nucleic acid sequence construct can also include a heterologous nucleic acid sequence that encodes a protease or peptidase cleavage site.
  • the recombinant nucleic acid sequence construct can also include a heterologous nucleic acid sequence that encodes an internal ribosome entry site (IRES).
  • IRS internal ribosome entry site
  • An IRES may be either a viral IRES or a eukaryotic IRES.
  • the recombinant nucleic acid sequence construct can include one or more leader sequences, in which each leader sequence encodes a signal peptide.
  • the recombinant nucleic acid sequence construct can include one or more promoters, one or more introns, one or more transcription termination regions, one or more initiation codons, one or more termination or stop codons, and/or one or more polyadenylation signals.
  • the recombinant nucleic acid sequence construct can also include one or more linker or tag sequences.
  • the tag sequence can encode a hemagglutinin (HA) tag.
  • the recombinant nucleic acid sequence construct can include the heterologous nucleic acid encoding the heavy chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof.
  • the heavy chain polypeptide can include a variable heavy chain (VH) region and/or at least one constant heavy chain (CH) region.
  • the at least one constant heavy chain region can include a constant heavy chain region 1 (CHI), a constant heavy chain region 2 (CH2), and a constant heavy chain region 3 (CH3), and/or a hinge region.
  • the heavy chain polypeptide can include a VH region and a CHI region.
  • the heavy chain polypeptide can include a VH region, a CHI region, a hinge region, a CH2 region, and a CH3 region.
  • the heavy chain polypeptide can include a complementarity determining region ("CDR") set.
  • the CDR set can contain three hypervariable regions of the VH region.
  • CDRl CDR2
  • CDR3 CDR3 of the heavy chain polypeptide
  • amino acid sequence of CDRl, CDR2, and CDR3 of the heavy chain polypeptide each independently comprise an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64. In one embodiment, the amino acid sequence of CDRl, CDR2, and CDR3 of the heavy chain polypeptide each independently comprise a comprises an amino acid sequence set forth in one of SEQ ID NO:29-64.
  • the recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the light chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof.
  • the light chain polypeptide can include a variable light chain (VL) region and/or a constant light chain (CL) region.
  • the light chain polypeptide can include a complementarity determining region ("CDR") set.
  • the CDR set can contain three hypervariable regions of the VL region.
  • CDRl CDR2
  • CDR3 CDR3 of the light chain polypeptide
  • the amino acid sequence of CDRl, CDR2, and CDR3 of the light chain polypeptide each independently comprise an amino acid sequence at least 90% homologous to one of SEQ ID NO:65-100. In one embodiment, the amino acid sequence of CDRl, CDR2, and CDR3 of the light chain polypeptide each independently comprise a comprises an amino acid sequence set forth in one of SEQ ID NO: 65-100.
  • the recombinant nucleic acid sequence construct can include heterologous nucleic acid sequence encoding a protease cleavage site.
  • the protease cleavage site can be recognized by a protease or peptidase.
  • the protease can be an endopeptidase or endoprotease, for example, but not limited to, furin, elastase, HtrA, calpain, trypsin, chymotrypsin, trypsin, and pepsin.
  • the protease can be furin.
  • the protease can be a serine protease, a threonine protease, cysteine protease, aspartate protease, metalloprotease, glutamic acid protease, or any protease that cleaves an internal peptide bond (i.e., does not cleave the N-terminal or C-terminal peptide bond).
  • the protease cleavage site can include one or more amino acid sequences that promote or increase the efficiency of cleavage.
  • the one or more amino acid sequences can promote or increase the efficiency of forming or generating discrete polypeptides.
  • the one or more amino acids sequences can include a 2A peptide sequence.
  • the recombinant nucleic acid sequence construct can include one or more linker sequences.
  • the linker sequence can spatially separate or link the one or more components described herein.
  • the linker sequence can encode an amino acid sequence that spatially separates or links two or more polypeptides.
  • the recombinant nucleic acid sequence construct can include one or more promoters.
  • the one or more promoters may be any promoter that is capable of driving gene expression and regulating gene expression.
  • a promoter is a cis-acting sequence element required for transcription via a DNA dependent RNA polymerase. Selection of the promoter used to direct gene expression depends on the particular application.
  • the promoter may be positioned about the same distance from the transcription start in the recombinant nucleic acid sequence construct as it is from the transcription start site in its natural setting. However, variation in this distance may be accommodated without loss of promoter function.
  • the promoter may be operably linked to the heterologous nucleic acid sequence encoding the heavy chain polypeptide and/or light chain polypeptide.
  • the promoter may be a promoter shown effective for expression in eukaryotic cells.
  • the promoter operably linked to the coding sequence may be a CMV promoter, a promoter from simian virus 40 (SV40), such as SV40 early promoter and SV40 later promoter, a mouse mammary tumor virus (MMTV) promoter, a human immunodeficiency virus (HIV) promoter such as the bovine
  • SV40 simian virus 40
  • MMTV mouse mammary tumor virus
  • HAV human immunodeficiency virus
  • BIV immunodeficiency virus
  • LTR long terminal repeat
  • ABV avian leukosis virus
  • CMV cytomegalovirus
  • EBV Epstein Barr virus
  • RSV Rous sarcoma virus
  • the promoter may also be a promoter from a human gene such as human actin, human myosin, human hemoglobin, human muscle creatine, human polyhedrin, or human metalothionein.
  • the promoter can be a constitutive promoter or an inducible promoter, which initiates transcription only when the host cell is exposed to some particular external stimulus.
  • the promoter can also be specific to a particular tissue or organ or stage of development.
  • the promoter may also be a tissue specific promoter, such as a muscle or skin specific promoter, natural or synthetic. Examples of such promoters are described in US patent application publication no. US20040175727, the contents of which are incorporated herein in its entirety.
  • the promoter can be associated with an enhancer.
  • the enhancer can be located upstream of the coding sequence.
  • the enhancer may be human actin, human myosin, human hemoglobin, human muscle creatine or a viral enhancer such as one from CMV, FMDV, RSV or EBV.
  • Polynucleotide function enhances are described in U.S. Patent Nos. 5,593,972, 5,962,428, and W094/016737, the contents of each are fully incorporated by reference.
  • the recombinant nucleic acid sequence construct can include one or more introns.
  • Each intron can include functional splice donor and acceptor sites.
  • the intron can include an enhancer of splicing.
  • the intron can include one or more signals required for efficient splicing.
  • the recombinant nucleic acid sequence construct can include one or more transcription termination regions.
  • the transcription termination region can be downstream of the coding sequence to provide for efficient termination.
  • the transcription termination region can be obtained from the same gene as the promoter described above or can be obtained from one or more different genes.
  • the recombinant nucleic acid sequence construct can include one or more initiation codons.
  • the initiation codon can be located upstream of the coding sequence.
  • the initiation codon can be in frame with the coding sequence.
  • the initiation codon can be associated with one or more signals required for efficient translation initiation, for example, but not limited to, a ribosome binding site.
  • the recombinant nucleic acid sequence construct can include one or more termination or stop codons.
  • the termination codon can be downstream of the coding sequence.
  • the termination codon can be in frame with the coding sequence.
  • the termination codon can be associated with one or more signals required for efficient translation termination.
  • the recombinant nucleic acid sequence construct can include one or more polyadenylation signals.
  • the polyadenylation signal can include one or more signals required for efficient polyadenylation of the transcript.
  • the polyadenylation signal can be positioned downstream of the coding sequence.
  • the polyadenylation signal may be a SV40
  • the SV40 polyadenylation signal may be a polyadenylation signal from a pCEP4 plasmid (Invitrogen, San Diego, CA).
  • the recombinant nucleic acid sequence construct can include one or more leader sequences.
  • the leader sequence can encode a signal peptide.
  • the signal peptide can be an immunoglobulin (Ig) signal peptide, for example, but not limited to, an IgG signal peptide and a IgE signal peptide.
  • Ig immunoglobulin
  • the recombinant nucleic acid sequence encoding a synthetic antibody can include one or more recombinant nucleic acid sequence constructs, in which each recombinant nucleic acid sequence construct can include one or more components.
  • the one or more components are described in detail above.
  • the one or more components, when included in the recombinant nucleic acid sequence construct, can be arranged in any order relative to one another. In some embodiments, the one or more components can be arranged in the recombinant nucleic acid sequence construct as described below. (12) Arrangement 1
  • a first recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the heavy chain polypeptide and a second recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • the first recombinant nucleic acid sequence encodes a heavy chain polypeptide having an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16.
  • the second recombinant nucleic acid sequence encodes a light chain polypeptide having an amino acid sequence at least 95% homologous to one of SEQ ID NOs: 17-28.
  • the first recombinant nucleic acid sequence construct can be placed in a vector.
  • the second recombinant nucleic acid sequence construct can be placed in a second or separate vector. Placement of the recombinant nucleic acid sequence construct into the vector is described in more detail below.
  • the first recombinant nucleic acid sequence construct can also include the promoter, intron, transcription termination region, initiation codon, termination codon, and/or polyadenylation signal.
  • the first recombinant nucleic acid sequence construct can further include the leader sequence, in which the leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the heavy chain polypeptide. Accordingly, the signal peptide encoded by the leader sequence can be linked by a peptide bond to the heavy chain polypeptide.
  • the second recombinant nucleic acid sequence construct can also include the promoter, initiation codon, termination codon, and polyadenylation signal.
  • the second recombinant nucleic acid sequence construct can further include the leader sequence, in which the leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the light chain polypeptide. Accordingly, the signal peptide encoded by the leader sequence can be linked by a peptide bond to the light chain polypeptide.
  • one example of arrangement 1 can include the first vector (and thus first recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH and CHI, and the second vector (and thus second recombinant nucleic acid sequence construct) encoding the light chain polypeptide that includes VL and CL.
  • a second example of arrangement 1 can include the first vector (and thus first recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH, CHI, hinge region, CH2, and CH3, and the second vector (and thus second recombinant nucleic acid sequence construct) encoding the light chain polypeptide that includes VL and CL. (13) Arrangement 2
  • the recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • the heterologous nucleic acid sequence encoding the heavy chain polypeptide can be positioned upstream (or 5') of the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • heterologous nucleic acid sequence encoding the light chain polypeptide can be positioned upstream (or 5') of the heterologous nucleic acid sequence encoding the heavy chain polypeptide.
  • the recombinant nucleic acid sequence construct can be placed in the vector as described in more detail below.
  • the recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the protease cleavage site and/or the linker sequence. If included in the recombinant nucleic acid sequence construct, the heterologous nucleic acid sequence encoding the protease cleavage site can be positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide. Accordingly, the protease cleavage site allows for separation of the heavy chain polypeptide and the light chain polypeptide into distinct polypeptides upon expression.
  • the linker sequence can be positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • the recombinant nucleic acid sequence construct can also include the promoter, intron, transcription termination region, initiation codon, termination codon, and/or polyadenylation signal.
  • the recombinant nucleic acid sequence construct can include one or more promoters.
  • the recombinant nucleic acid sequence construct can include two promoters such that one promoter can be associated with the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the second promoter can be associated with the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • the recombinant nucleic acid sequence construct can include one promoter that is associated with the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • the recombinant nucleic acid sequence construct can further include two leader sequences, in which a first leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the heavy chain polypeptide and a second leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • a first signal peptide encoded by the first leader sequence can be linked by a peptide bond to the heavy chain polypeptide and a second signal peptide encoded by the second leader sequence can be linked by a peptide bond to the light chain polypeptide.
  • one example of arrangement 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH and CHI, and the light chain polypeptide that includes VL and CL, in which the linker sequence is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • a second example of arrangement of 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH and CHI, and the light chain polypeptide that includes VL and CL, in which the heterologous nucleic acid sequence encoding the protease cleavage site is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • a third example of arrangement 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH, CHI, hinge region, CH2, and CH3, and the light chain polypeptide that includes VL and CL, in which the linker sequence is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • a forth example of arrangement of 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH, CHI, hinge region, CH2, and CH3, and the light chain polypeptide that includes VL and CL, in which the heterologous nucleic acid sequence encoding the protease cleavage site is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
  • the recombinant nucleic acid sequence construct can include, amongst the one or more components, the heterologous nucleic acid sequence encoding the heavy chain polypeptide and/or the heterologous nucleic acid sequence encoding the light chain polypeptide. Accordingly, the recombinant nucleic acid sequence construct can facilitate expression of the heavy chain polypeptide and/or the light chain polypeptide.
  • the first recombinant nucleic acid sequence construct can facilitate the expression of the heavy chain polypeptide and the second recombinant nucleic acid sequence construct can facilitate expression of the light chain polypeptide.
  • the recombinant nucleic acid sequence construct can facilitate the expression of the heavy chain polypeptide and the light chain polypeptide.
  • the heavy chain polypeptide and the light chain polypeptide can assemble into the synthetic antibody.
  • the heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being capable of binding the antigen.
  • the heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being more immunogenic as compared to an antibody not assembled as described herein.
  • the heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being capable of eliciting or inducing an immune response against the antigen.
  • the recombinant nucleic acid sequence construct described above can be placed in one or more vectors.
  • the one or more vectors can contain an origin of replication.
  • the one or more vectors can be a plasmid, bacteriophage, bacterial artificial chromosome or yeast artificial chromosome.
  • the one or more vectors can be either a self-replication extra chromosomal vector, or a vector which integrates into a host genome.
  • Vectors include, but are not limited to, plasmids, expression vectors, recombinant viruses, any form of recombinant "naked DNA” vector, and the like.
  • a “vector” comprises a nucleic acid which can infect, transfect, transiently or permanently transduce a cell. It will be recognized that a vector can be a naked nucleic acid, or a nucleic acid complexed with protein or lipid.
  • the vector optionally comprises viral or bacterial nucleic acids and/or proteins, and/or membranes (e.g., a cell membrane, a viral lipid envelope, etc.).
  • Vectors include, but are not limited to replicons (e.g., RNA replicons, bacteriophages) to which fragments of DNA may be attached and become replicated.
  • Vectors thus include, but are not limited to RNA, autonomous self-replicating circular or linear DNA or RNA (e.g., plasmids, viruses, and the like, see, e.g., U.S. Pat. No. 5,217,879), and include both the expression and non-expression plasmids.
  • the vector includes linear DNA, enzymatic DNA or synthetic DNA.
  • a recombinant microorganism or cell culture is described as hosting an "expression vector" this includes both extra-chromosomal circular and linear DNA and DNA that has been incorporated into the host chromosome(s).
  • the vector may either be stably replicated by the cells during mitosis as an autonomous structure, or is incorporated within the host's genome.
  • the one or more vectors can be a heterologous expression construct, which is generally a plasmid that is used to introduce a specific gene into a target cell. Once the expression vector is inside the cell, the heavy chain polypeptide and/or light chain polypeptide that are encoded by the recombinant nucleic acid sequence construct is produced by the cellular-transcription and translation machinery ribosomal complexes.
  • the one or more vectors can express large amounts of stable messenger RNA, and therefore proteins.
  • the one or more vectors can be a circular plasmid or a linear nucleic acid.
  • the circular plasmid and linear nucleic acid are capable of directing expression of a particular nucleotide sequence in an appropriate subject cell.
  • the one or more vectors comprising the recombinant nucleic acid sequence construct may be chimeric, meaning that at least one of its components is heterologous with respect to at least one of its other components.
  • the one or more vectors can be a plasmid.
  • the plasmid may be useful for transfecting cells with the recombinant nucleic acid sequence construct.
  • the plasmid may be useful for introducing the recombinant nucleic acid sequence construct into the subject.
  • the plasmid may also comprise a regulatory sequence, which may be well suited for gene expression in a cell into which the plasmid is administered.
  • the plasmid may also comprise a mammalian origin of replication in order to maintain the plasmid extrachromosomally and produce multiple copies of the plasmid in a cell.
  • the plasmid may be pVAXl, pCEP4 or pREP4 from Invitrogen (San Diego, CA), which may comprise the Epstein Barr virus origin of replication and nuclear antigen EBNA-1 coding region, which may produce high copy episomal replication without integration.
  • the backbone of the plasmid may be pAV0242.
  • the plasmid may be a replication defective adenovirus type 5 (Ad5) plasmid.
  • the plasmid may be pSE420 (Invitrogen, San Diego, Calif), which may be used for protein production in Escherichia coli (E.coli).
  • the plasmid may also be pYES2 (Invitrogen, San Diego, Calif), which may be used for protein production in Saccharomyces cerevisiae strains of yeast.
  • the plasmid may also be of the MAXBACTM complete baculovirus expression system (Invitrogen, San Diego, Calif), which may be used for protein production in insect cells.
  • the plasmid may also be pcDNAI or pcDNA3 (Invitrogen, San Diego, Calif), which may be used for protein production in mammalian cells such as Chinese hamster ovary (CHO) cells.
  • the nucleic acid is an RNA molecule.
  • the RNA molecule is transcribed from a DNA sequence described herein.
  • the RNA molecule is encoded by a DNA sequence at least 90% homologous to one of SEQ ID NOs:2 and 4.
  • the nucleotide sequence comprises an RNA sequence transcribed by a DNA sequence encoding a polypeptide sequence at least 90% homologous to one of SEQ ID NOs: 1, 3, and 5-28, or a variant thereof or a fragment thereof.
  • the invention provides an RNA molecule encoding one or more of the MAbs or DMAbs.
  • the RNA may be plus -stranded.
  • the RNA molecule can be translated by cells without needing any intervening replication steps such as reverse transcription.
  • a RNA molecule useful with the invention may have a 5' cap (e.g. a 7-methylguanosine). This cap can enhance in vivo translation of the RNA.
  • the 5' nucleotide of a RNA molecule useful with the invention may have a 5' triphosphate group. In a capped RNA this may be linked to a 7-methylguanosine via a 5'-to-5' bridge.
  • a RNA molecule may have a 3' poly -A tail. It may also include a poly-A polymerase recognition sequence (e.g. AAUAAA) near its 3' end.
  • a RNA molecule useful with the invention may be single-stranded.
  • a RNA molecule useful with the invention may comprise synthetic RNA.
  • the RNA molecule is a naked RNA molecule.
  • the RNA molecule is comprised within a vector.
  • the RNA has 5' and 3' UTRs.
  • the 5' UTR is between zero and 3000 nucleotides in length.
  • the length of 5' and 3' UTR sequences to be added to the coding region can be altered by different methods, including, but not limited to, designing primers for PCR that anneal to different regions of the UTRs. Using this approach, one of ordinary skill in the art can modify the 5' and 3' UTR lengths required to achieve optimal translation efficiency following transfection of the transcribed RNA.
  • the 5' and 3' UTRs can be the naturally occurring, endogenous 5' and 3' UTRs for the gene of interest.
  • UTR sequences that are not endogenous to the gene of interest can be added by incorporating the UTR sequences into the forward and reverse primers or by any other modifications of the template.
  • the use of UTR sequences that are not endogenous to the gene of interest can be useful for modifying the stability and/or translation efficiency of the RNA. For example, it is known that AU-rich elements in 3' UTR sequences can decrease the stability of RNA. Therefore, 3' UTRs can be selected or designed to increase the stability of the transcribed RNA based on properties of UTRs that are well known in the art.
  • the 5' UTR can contain the Kozak sequence of the endogenous gene.
  • a consensus Kozak sequence can be redesigned by adding the 5' UTR sequence.
  • Kozak sequences can increase the efficiency of translation of some RNA transcripts, but does not appear to be required for all RNAs to enable efficient translation. The requirement for Kozak sequences for many RNAs is known in the art.
  • the 5' UTR can be derived from an RNA virus whose RNA genome is stable in cells.
  • various nucleotide analogues can be used in the 3' or 5' UTR to impede exonuclease degradation of the RNA.
  • the RNA has both a cap on the 5' end and a 3' poly(A) tail which determine ribosome binding, initiation of translation and stability of RNA in the cell.
  • the RNA is a nucleoside-modified RNA.
  • Nucleoside-modified RNA have particular advantages over non-modified RNA, including for example, increased stability, low or absent innate immunogenicity, and enhanced translation.
  • the one or more vectors may be circular plasmid, which may transform a target cell by integration into the cellular genome or exist extrachromosomally (e.g., autonomous replicating plasmid with an origin of replication).
  • the vector can be pVAX, pcDNA3.0, or provax, or any other expression vector capable of expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct.
  • a linear nucleic acid, or linear expression cassette (“LEC”), that is capable of being efficiently delivered to a subject via electroporation and expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct.
  • the LEC may be any linear DNA devoid of any phosphate backbone.
  • the LEC may not contain any antibiotic resistance genes and/or a phosphate backbone.
  • the LEC may not contain other nucleic acid sequences unrelated to the desired gene expression.
  • the LEC may be derived from any plasmid capable of being linearized.
  • the plasmid may be capable of expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct.
  • the plasmid can be pNP (Puerto Rico/34) or pM2 (New Caledonia/99).
  • the plasmid may be WLV009, pVAX, pcDNA3.0, or provax, or any other expression vector capable of expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct.
  • the LEC can be pcrM2.
  • the LEC can be pcrNP.
  • pcrNP and pcrMR can be derived from pNP (Puerto Rico/34) and pM2 (New Caledonia/99), respectively.
  • viral vectors are provided herein which are capable of delivering a nucleic acid of the invention to a cell.
  • the expression vector may be provided to a cell in the form of a viral vector.
  • Viral vector technology is well known in the art and is described, for example, in Sambrook et al. (2001), and in Ausubel et al. (1997), and in other virology and molecular biology manuals.
  • Viruses, which are useful as vectors include, but are not limited to, retroviruses, adenoviruses, adeno-associated viruses, herpes viruses, and lentiviruses.
  • a suitable vector contains an origin of replication functional in at least one organism, a promoter sequence, convenient restriction endonuclease sites, and one or more selectable markers.
  • Viral vectors and especially retroviral vectors, have become the most widely used method for inserting genes into mammalian, e.g., human cells.
  • Other viral vectors can be derived from lentivirus, poxviruses, herpes simplex virus I, adenoviruses and adeno- associated viruses, and the like. See, for example, U.S. Pat. Nos. 5,350,674 and 5,585,362. (19) Method of Preparing the Vector
  • the vector can be used to inoculate a cell culture in a large scale fermentation tank, using known methods in the art.
  • the vector after the final subcloning step, can be used with one or more electroporation (EP) devices.
  • EP electroporation
  • the one or more vectors can be formulated or manufactured using a combination of known devices and techniques, but preferably they are manufactured using a plasmid manufacturing technique that is described in a licensed, co-pending U.S. provisional application U.S. Serial No. 60/939,792, which was filed on May 23, 2007.
  • the DNA plasmids described herein can be formulated at concentrations greater than or equal to 10 mg/mL.
  • the manufacturing techniques also include or incorporate various devices and protocols that are commonly known to those of ordinary skill in the art, in addition to those described in U.S. Serial No. 60/939792, including those described in a licensed patent, US Patent No. 7,238,522, which issued on July 3, 2007.
  • the above-referenced application and patent, US Serial No. 60/939,792 and US Patent No. 7,238,522, respectively, are hereby incorporated in their entirety.
  • the recombinant nucleic acid sequence can encode the antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the antibody can bind or react with the antigen, which is described in more detail below.
  • the antibody may comprise a heavy chain and a light chain complementarity determining region ("CDR") set, respectively interposed between a heavy chain and a light chain framework (“FR") set which provide support to the CDRs and define the spatial relationship of the CDRs relative to each other.
  • the CDR set may contain three hypervariable regions of a heavy or light chain V region. Proceeding from the N-terminus of a heavy or light chain, these regions are denoted as "CDR1," "CDR2,” and “CDR3,” respectively.
  • An antigen-binding site therefore, may include six CDRs, comprising the CDR set from each of a heavy and a light chain V region.
  • the proteolytic enzyme papain preferentially cleaves IgG molecules to yield several fragments, two of which (the F(ab) fragments) each comprise a covalent heterodimer that includes an intact antigen-binding site.
  • the enzyme pepsin is able to cleave IgG molecules to provide several fragments, including the F(ab')2 fragment, which comprises both antigen- binding sites.
  • the antibody can be the Fab or F(ab')2.
  • the Fab can include the heavy chain polypeptide and the light chain polypeptide.
  • the heavy chain polypeptide of the Fab can include the VH region and the CHI region.
  • the light chain of the Fab can include the VL region and CL region.
  • the antibody can be an immunoglobulin (Ig).
  • the Ig can be, for example, IgA, IgM, IgD, IgE, and IgG.
  • the immunoglobulin can include the heavy chain polypeptide and the light chain polypeptide.
  • the heavy chain polypeptide of the immunoglobulin can include a VH region, a CHI region, a hinge region, a CH2 region, and a CH3 region.
  • the light chain polypeptide of the immunoglobulin can include a VL region and CL region.
  • the antibody can be a polyclonal or monoclonal antibody.
  • the antibody can be a chimeric antibody, a single chain antibody, an affinity matured antibody, a human antibody, a humanized antibody, or a fully human antibody.
  • the humanized antibody can be an antibody from a non-human species that binds the desired antigen having one or more
  • CDRs complementarity determining regions
  • the antibody can be a bispecific antibody as described below in more detail.
  • the antibody can be a bifunctional antibody as also described below in more detail.
  • the antibody can be generated in the subject upon administration of the composition to the subject.
  • the antibody may have a half-life within the subject.
  • the antibody may be modified to extend or shorten its half-life within the subject. Such modifications are described below in more detail.
  • the antibody can be defucosylated as described in more detail below.
  • the antibody may be modified to reduce or prevent antibody-dependent enhancement (ADE) of disease associated with the antigen as described in more detail below.
  • AD antibody-dependent enhancement
  • the recombinant nucleic acid sequence can encode a bispecific antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the bispecific antibody can bind or react with two antigens, for example, two of the antigens described below in more detail.
  • the bispecific antibody can be comprised of fragments of two of the antibodies described herein, thereby allowing the bispecific antibody to bind or react with two desired target molecules, which may include the antigen, which is described below in more detail, a ligand, including a ligand for a receptor, a receptor, including a ligand-binding site on the receptor, a ligand- receptor complex, and a marker.
  • the invention provides novel bispecific antibodies comprising a first antigen-binding site that specifically binds to a first target and a second antigen-binding site that specifically binds to a second target, with particularly advantageous properties such as producibility, stability, binding affinity, biological activity, specific targeting of certain T cells, targeting efficiency and reduced toxicity.
  • there are bispecific antibodies wherein the bispecific antibody binds to the first target with high affinity and to the second target with low affinity.
  • there are bispecific antibodies wherein the bispecific antibody binds to the first target with low affinity and to the second target with high affinity.
  • there are bispecific antibodies wherein the bispecific antibody binds to the first target with a desired affinity and to the second target with a desired affinity.
  • the bispecific antibody is a bivalent antibody comprising a) a first light chain and a first heavy chain of an antibody specifically binding to a first antigen, and b) a second light chain and a second heavy chain of an antibody specifically binding to a second antigen.
  • a bispecific antibody molecule according to the invention may have two binding sites of any desired specificity.
  • one of the binding sites is capable of binding a tumor associated antigen.
  • the binding site included in the Fab fragment is a binding site specific for a MAYV antigen.
  • the binding site included in the single chain Fv fragment is a binding site specific for a MAYV antigen such as a MAYV capsid antigen or a MAYV envelope antigen, for example MAYV- El , MAYV-E2, MAYV-E3, or MAYV-6K.
  • one of the binding sites of an antibody molecule according to the invention is able to bind a T-cell specific receptor molecule and/or a natural killer cell (NK cell) specific receptor molecule.
  • a T-cell specific receptor is the so called "T-cell receptor" (TCRs), which allows a T cell to bind to and, if additional signals are present, to be activated by and respond to an epitope/antigen presented by another cell called the antigen- presenting cell or APC.
  • T cell receptor is known to resemble a Fab fragment of a naturally occurring immunoglobulin. It is generally monovalent, encompassing .alpha.- and .beta. -chains, in some embodiments, it encompasses .gamma.
  • the TCR is TCR (alpha/beta) and in some embodiments, it is TCR (gamma/delta).
  • the T cell receptor forms a complex with the CD3 T- Cell co-receptor.
  • CD3 is a protein complex and is composed of four distinct chains. In mammals, the complex contains a CD3y chain, a CD36 chain, and two CD3E chains. These chains associate with a molecule known as the T cell receptor (TCR) and the ⁇ -chain to generate an activation signal in T lymphocytes.
  • TCR T cell receptor
  • a T-cell specific receptor is the CD3 T-Cell co-receptor.
  • a T-cell specific receptor is CD28, a protein that is also expressed on T cells.
  • CD28 can provide co- stimulatory signals, which are required for T cell activation.
  • CD28 plays important roles in T- cell proliferation and survival, cytokine production, and T-helper type-2 development.
  • CD134 also termed Ox40.
  • CD134/OX40 is being expressed after 24 to 72 hours following activation and can be taken to define a secondary costimulatory molecule.
  • Another example of a T-cell receptor is 4-1 BB capable of binding to 4-1 BB-Ligand on antigen presenting cells (APCs), whereby a costimulatory signal for the T cell is generated.
  • APCs antigen presenting cells
  • CD5 Another example of a receptor predominantly found on T- cells is CD5, which is also found on B cells at low levels.
  • CD95 also known as the Fas receptor, which mediates apoptotic signaling by Fas-ligand expressed on the surface of other cells. CD95 has been reported to modulate TCR/CD3 -driven signaling pathways in resting T lymphocytes.
  • NK cell specific receptor molecule is CD 16, a low affinity Fc receptor and NKG2D.
  • An example of a receptor molecule that is present on the surface of both T cells and natural killer (NK) cells is CD2 and further members of the CD2- superfamily. CD2 is able to act as a co-stimulatory molecule on T and NK cells.
  • the first binding site of the antibody molecule binds a MAYV antigen and the second binding site binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule.
  • NK natural killer
  • the first binding site of the antibody molecule binds one of MAYV-capsid, MAYV -El, MAYV-E1, MAYV-E2, MAYV-E3, or MAYV-6K or a polyprotein comprising any combination thereof, and the second binding site binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule.
  • the first binding site of the antibody molecule binds a MAYV antigen and the second binding site binds one of CD3, the T cell receptor (TCR), CD28, CD 16, NKG2D, Ox40, 4-1BB, CD2, CD5 and CD95.
  • the first binding site of the antibody molecule binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule and the second binding site binds a MAYV antigen.
  • the first binding site of the antibody binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule and the second binding site binds one of MAYV-capsid, MAYV- El, MAYV-E1, MAYV-E2, MAYV-E3, or MAYV-6K or a polyprotein comprising any combination thereof.
  • the first binding site of the antibody binds one of CD3, the T cell receptor (TCR), CD28, CD16, NKG2D, Ox40, 4-lBB, CD2, CD5 and CD95, and the second binding site binds a MAYV antigen.
  • the recombinant nucleic acid sequence can encode a bifunctional antibody, a fragment thereof, a variant thereof, or a combination thereof.
  • the bifunctional antibody can bind or react with the antigen described below.
  • the bifunctional antibody can also be modified to impart an additional functionality to the antibody beyond recognition of and binding to the antigen. Such a modification can include, but is not limited to, coupling to factor H or a fragment thereof.
  • Factor H is a soluble regulator of complement activation and thus, may contribute to an immune response via complement-mediated lysis (CML).
  • the antibody may be modified to extend or shorten the half-life of the antibody in the subject.
  • the modification may extend or shorten the half-life of the antibody in the serum of the subject.
  • the modification may be present in a constant region of the antibody.
  • the modification may be one or more amino acid substitutions in a constant region of the antibody that extend the half-life of the antibody as compared to a half-life of an antibody not containing the one or more amino acid substitutions.
  • the modification may be one or more amino acid substitutions in the CH2 domain of the antibody that extend the half-life of the antibody as compared to a half-life of an antibody not containing the one or more amino acid substitutions.
  • the one or more amino acid substitutions in the constant region may include replacing a methionine residue in the constant region with a tyrosine residue, a serine residue in the constant region with a threonine residue, a threonine residue in the constant region with a glutamate residue, or any combination thereof, thereby extending the half-life of the antibody.
  • the one or more amino acid substitutions in the constant region may include replacing a methionine residue in the CH2 domain with a tyrosine residue, a serine residue in the CH2 domain with a threonine residue, a threonine residue in the CH2 domain with a glutamate residue, or any combination thereof, thereby extending the half-life of the antibody.
  • the recombinant nucleic acid sequence can encode an antibody that is not fucosylated (i.e., a defucosylated antibody or a non-fucosylated antibody), a fragment thereof, a variant thereof, or a combination thereof.
  • Fucosylation includes the addition of the sugar fucose to a molecule, for example, the attachment of fucose to N-glycans, O-glycans and glycolipids. Accordingly, in a defucosylated antibody, fucose is not attached to the carbohydrate chains of the constant region. In turn, this lack of fucosylation may improve FcyRIIIa binding and antibody directed cellular cytotoxic (ADCC) activity by the antibody as compared to the fucosylated antibody. Therefore, in some embodiments, the non-fucosylated antibody may exhibit increased ADCC activity as compared to the fucosylated antibody.
  • ADCC antibody directed cellular cytotoxic
  • the antibody may be modified so as to prevent or inhibit fucosylation of the antibody. In some embodiments, such a modified antibody may exhibit increased ADCC activity as compared to the unmodified antibody.
  • the modification may be in the heavy chain, light chain, or a combination thereof.
  • the modification may be one or more amino acid substitutions in the heavy chain, one or more amino acid substitutions in the light chain, or a combination thereof.
  • the antibody may be modified to reduce or prevent antibody-dependent enhancement (ADE) of disease associated with the antigen, but still neutralize the antigen.
  • AD antibody-dependent enhancement
  • the antibody may be modified to include one or more amino acid substitutions that reduce or prevent binding of the antibody to FcyRla.
  • the one or more amino acid substitutions may be in the constant region of the antibody.
  • the one or more amino acid substitutions may include replacing a leucine residue with an alanine residue in the constant region of the antibody, i.e., also known herein as LA, LA mutation or LA substitution.
  • the one or more amino acid substitutions may include replacing two leucine residues, each with an alanine residue, in the constant region of the antibody and also known herein as LALA, LALA mutation, or LALA substitution.
  • the presence of the LALA substitutions may prevent or block the antibody from binding to FcyRla, and thus, the modified antibody does not enhance or cause ADE of disease associated with the antigen, but still neutralizes the antigen.
  • the invention provides anti-MAYV antibodies.
  • the antibodies may be intact monoclonal antibodies, and immunologically active fragments (e.g., a Fab or (Fab)2 fragment), a monoclonal antibody heavy chain, or a monoclonal antibody light chain.
  • the antibody may comprise a heavy chain and a light chain complementarity determining region ("CDR") set, respectively interposed between a heavy chain and a light chain framework (“FR") set which provide support to the CDRs and define the spatial relationship of the CDRs relative to each other.
  • the CDR set may contain three hypervariable regions of a heavy or light chain V region. Proceeding from the N-terminus of a heavy or light chain, these regions are denoted as "CDR1," "CDR2,” and “CDR3,” respectively.
  • An antigen-binding site therefore, may include six CDRs, comprising the CDR set from each of a heavy and a light chain V region.
  • the antibody can be an immunoglobulin (Ig).
  • the Ig can be, for example, IgA, IgM, IgD, IgE, and IgG.
  • the immunoglobulin can include the heavy chain polypeptide and the light chain polypeptide.
  • the heavy chain polypeptide of the immunoglobulin can include a VH region, a CHI region, a hinge region, a CH2 region, and a CH3 region.
  • the light chain polypeptide of the immunoglobulin can include a VL region and CL region.
  • the anti-MAYV antibody comprises a heavy chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:5-16, or a fragment thereof. In one embodiment, the anti-MAYV antibody comprises a heavy chain comprising an amino acid sequence set forth in one of SEQ ID NO:5-16, or a fragment thereof.
  • the anti-MAYV antibody comprises a heavy chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64. In one embodiment, the anti-MAYV antibody comprises a heavy chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence set forth in one of SEQ ID NO:29-64.
  • the anti-MAYV antibody comprises a light chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO: 17-28, or a fragment thereof. In one embodiment, the anti-MAYV antibody comprises a light chain comprising an amino acid sequence set forth in one of SEQ ID NO: 17-28, or a fragment thereof.
  • the anti-MAYV antibody comprises a light chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence at least 90% homologous to one of SEQ ID NO: 65 -100. In one embodiment, the anti-MAYV antibody comprises a light chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence set forth in one of SEQ ID NO:65-100.
  • the anti-MAYV antibody comprises an amino acid sequence at least 90% homologous to one of SEQ ID NO: 1 and 3, or a fragment thereof. In one embodiment, the anti-MAYV antibody comprises an amino acid sequence set forth in one of SEQ ID NO: 1 and 3, or a fragment thereof.
  • the synthetic antibody is directed to the antigen or fragment or variant thereof.
  • the antigen can be a nucleic acid sequence, an amino acid sequence, a polysaccharide or a combination thereof.
  • the nucleic acid sequence can be DNA, RNA, cDNA, a variant thereof, a fragment thereof, or a combination thereof.
  • the amino acid sequence can be a protein, a peptide, a variant thereof, a fragment thereof, or a combination thereof.
  • the polysaccharide can be a nucleic acid encoded polysaccharide.
  • the antigen can be from a virus.
  • the antigen can be associated with viral infection.
  • the antigen can be associated with Mayaro virus infection.
  • the antigen can be a Mayaro Capsid protein or a Mayaro envelope protein.
  • the Mayaro envelope protein can include Mayaro-El, E2, E3, or 6K.
  • the antigen can be a fragment of a Mayaro Capsid protein or a Mayaro envelope protein.
  • the antigen is a fragment of a Mayaro Capsid, wherein the fragment comprises the amino acid sequence
  • the antigen is a fragment of a Mayaro Envelope protein, wherein the fragment comprises the amino acid sequence GRSVIHFSTASAAPS (SEQ ID NO: 102) or LAKCPPGEVISVSFV (SEQ ID NO: 103)
  • a synthetic antibody of the invention targets two or more antigens.
  • at least one antigen of a bispecific antibody is selected from the antigens described herein.
  • the two or more antigens are selected from the antigens described herein.
  • the viral antigen can be a viral antigen or fragment or variant thereof.
  • the virus can be a disease-causing virus.
  • the virus can be a Mayaro virus.
  • the antigen may be a Mayaro viral antigen, or fragment thereof, or variant thereof.
  • the Mayaro antigen can be from a factor that allows the virus to replicate, infect or survive. Factors that allow a Mayaro virus to replicate or survive include, but are not limited to structural proteins and non-structural proteins.
  • a protein can be an envelope protein or a capsid protein.
  • a capsid protein is Mayaro Capsid.
  • an envelope protein is Mayaro El, E2, E3, 6K or a polyprotein comprising any combination thereof.
  • the composition may further comprise a pharmaceutically acceptable excipient.
  • the pharmaceutically acceptable excipient can be functional molecules such as vehicles, carriers, or diluents.
  • the pharmaceutically acceptable excipient can be a transfection facilitating agent, which can include surface active agents, such as immune-stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs, vesicles such as squalene and squalene, hyaluronic acid, lipids, liposomes, calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents.
  • ISCOMS immune-stimulating complexes
  • LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs, vesicles such as squalene and squalene, hyaluronic acid, lipids,
  • the transfection facilitating agent is a polyanion, poly cation, including poly-L- glutamate (LGS), or lipid.
  • the transfection facilitating agent is poly-L-glutamate, and the poly-L-glutamate may be present in the composition at a concentration less than 6 mg/ml.
  • the transfection facilitating agent may also include surface active agents such as immune- stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs and vesicles such as squalene and squalene, and hyaluronic acid may also be used administered in conjunction with the composition.
  • ISCOMS immune- stimulating complexes
  • LPS analog including monophosphoryl lipid A
  • muramyl peptides muramyl peptides
  • quinone analogs and vesicles such as squalene and squalene
  • hyaluronic acid may also
  • the composition may also include a transfection facilitating agent such as lipids, liposomes, including lecithin liposomes or other liposomes known in the art, as a DNA-liposome mixture (see for example W09324640), calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents.
  • the transfection facilitating agent is a polyanion, poly cation, including poly-L-glutamate (LGS), or lipid.
  • Concentration of the transfection agent in the vaccine is less than 4 mg/ml, less than 2 mg/ml, less than 1 mg/ml, less than 0.750 mg/ml, less than 0.500 mg/ml, less than 0.250 mg/ml, less than 0.100 mg/ml, less than 0.050 mg/ml, or less than 0.010 mg/ml.
  • composition may further comprise a genetic facilitator agent as described in U.S. Serial No. 021,579 filed April 1, 1994, which is fully incorporated by reference.
  • composition may comprise DNA at quantities of from about 1 nanogram to 100 milligrams; about 1 microgram to about 10 milligrams; or preferably about 0.1 microgram to about 10 milligrams; or more preferably about 1 milligram to about 2 milligram.
  • composition according to the present invention comprises about 5 nanogram to about 1000 micrograms of DNA.
  • composition can contain about 10 nanograms to about 800 micrograms of DNA.
  • the composition can contain about 0.1 to about 500 micrograms of DNA.
  • the composition can contain about 1 to about 350 micrograms of DNA.
  • the composition can contain about 25 to about 250 micrograms, from about 100 to about 200 microgram, from about 1 nanogram to 100 milligrams; from about 1 microgram to about 10 milligrams; from about 0.1 microgram to about 10 milligrams; from about 1 milligram to about 2 milligram, from about 5 nanogram to about 1000 micrograms, from about 10 nanograms to about 800 micrograms, from about 0.1 to about 500 micrograms, from about 1 to about 350 micrograms, from about 25 to about 250 micrograms, from about 100 to about 200 microgram of DNA.
  • the composition can be formulated according to the mode of administration to be used.
  • An injectable pharmaceutical composition can be sterile, pyrogen free and particulate free.
  • An isotonic formulation or solution can be used.
  • Additives for isotonicity can include sodium chloride, dextrose, mannitol, sorbitol, and lactose.
  • the composition can comprise a vasoconstriction agent.
  • the isotonic solutions can include phosphate buffered saline.
  • the composition can further comprise stabilizers including gelatin and albumin. The stabilizers can allow the formulation to be stable at room or ambient temperature for extended periods of time, including LGS or polycations or polyanions.
  • the present invention also relates a method of generating the synthetic antibody.
  • the method can include administering the composition to the subject in need thereof by using the method of delivery described in more detail below. Accordingly, the synthetic antibody is generated in the subject or in vivo upon administration of the composition to the subject.
  • the method can also include introducing the composition into one or more cells, and therefore, the synthetic antibody can be generated or produced in the one or more cells.
  • the method can further include introducing the composition into one or more tissues, for example, but not limited to, skin and muscle, and therefore, the synthetic antibody can be generated or produced in the one or more tissues.
  • the present invention further relates to a method of identifying or screening for the antibody described above, which is reactive to or binds the antigen described above.
  • the method of identifying or screening for the antibody can use the antigen in methodologies known in those skilled in art to identify or screen for the antibody. Such methodologies can include, but are not limited to, selection of the antibody from a library (e.g., phage display) and immunization of an animal followed by isolation and/or purification of the antibody.
  • the present invention also relates to a method of delivering the composition to the subject in need thereof.
  • the method of delivery can include, administering the composition to the subject.
  • Administration can include, but is not limited to, DNA injection with and without in vivo electroporation, liposome mediated delivery, and nanoparticle facilitated delivery.
  • the mammal receiving delivery of the composition may be human, primate, non- human primate, cow, cattle, sheep, goat, antelope, bison, water buffalo, bison, bovids, deer, hedgehogs, elephants, llama, alpaca, mice, rats, and chicken.
  • the composition may be administered by different routes including orally, parenterally, sublingually, trans dermally, rectally, transmucosally, topically, via inhalation, via buccal administration, intrapleurally, intravenous, intraarterial, intraperitoneal, subcutaneous, intramuscular, intranasal, intrathecal, and intraarticular or combinations thereof.
  • the composition may be administered as a suitably acceptable formulation in accordance with normal veterinary practice. The veterinarian can readily determine the dosing regimen and route of administration that is most appropriate for a particular animal.
  • the composition may be administered by traditional syringes, needleless injection devices, "microprojectile bombardment gone guns", or other physical methods such as electroporation ("EP”), "hydrodynamic method", or ultrasound.
  • Electroporation electroporation
  • Administration of the composition via electroporation may be accomplished using electroporation devices that can be configured to deliver to a desired tissue of a mammal, a pulse of energy effective to cause reversible pores to form in cell membranes, and preferable the pulse of energy is a constant current similar to a preset current input by a user.
  • the electroporation device may comprise an electroporation component and an electrode assembly or handle assembly.
  • the electroporation component may include and incorporate one or more of the various elements of the electroporation devices, including: controller, current waveform generator, impedance tester, waveform logger, input element, status reporting element, communication port, memory component, power source, and power switch.
  • the electroporation may be accomplished using an in vivo electroporation device, for example CELLECTRA EP system (Inovio Pharmaceuticals, Plymouth Meeting, PA) or Elgen electroporator (Inovio Pharmaceuticals, Plymouth Meeting, PA) to facilitate transfection of cells by the plasmid.
  • CELLECTRA EP system Inovio Pharmaceuticals, National Meeting, PA
  • Elgen electroporator Inovio Pharmaceuticals, Plymouth Meeting, PA
  • the electroporation component may function as one element of the electroporation devices, and the other elements are separate elements (or components) in communication with the electroporation component.
  • the electroporation component may function as more than one element of the electroporation devices, which may be in communication with still other elements of the electroporation devices separate from the electroporation component.
  • the elements of the electroporation devices existing as parts of one electromechanical or mechanical device may not limited as the elements can function as one device or as separate elements in communication with one another.
  • the electroporation component may be capable of delivering the pulse of energy that produces the constant current in the desired tissue, and includes a feedback mechanism.
  • the electrode assembly may include an electrode array having a plurality of electrodes in a spatial arrangement, wherein the electrode assembly receives the pulse of energy from the electroporation component and delivers same to the desired tissue through the electrodes. At least one of the plurality of electrodes is neutral during delivery of the pulse of energy and measures impedance in the desired tissue and communicates the impedance to the electroporation component.
  • the feedback mechanism may receive the measured impedance and can adjust the pulse of energy delivered by the electroporation component to maintain the constant current.
  • a plurality of electrodes may deliver the pulse of energy in a decentralized partem.
  • the plurality of electrodes may deliver the pulse of energy in the decentralized partem through the control of the electrodes under a programmed sequence, and the programmed sequence is input by a user to the electroporation component.
  • the programmed sequence may comprise a plurality of pulses delivered in sequence, wherein each pulse of the plurality of pulses is delivered by at least two active electrodes with one neutral electrode that measures impedance, and wherein a subsequent pulse of the plurality of pulses is delivered by a different one of at least two active electrodes with one neutral electrode that measures impedance.
  • the feedback mechanism may be performed by either hardware or software.
  • the feedback mechanism may be performed by an analog closed-loop circuit.
  • the feedback occurs every 50 ⁇ , 20 ⁇ , 10 or 1 ⁇ , but is preferably a real-time feedback or
  • the neutral electrode may measure the impedance in the desired tissue and communicates the impedance to the feedback mechanism, and the feedback mechanism responds to the impedance and adjusts the pulse of energy to maintain the constant current at a value similar to the preset current.
  • the feedback mechanism may maintain the constant current continuously and instantaneously during the delivery of the pulse of energy.
  • electroporation devices and electroporation methods that may facilitate delivery of the composition of the present invention, include those described in U.S. Patent No. 7,245,963 by Draghia-Akli, et al, U.S. Patent Pub. 2005/0052630 submitted by Smith, et al., the contents of which are hereby incorporated by reference in their entirety.
  • Other electroporation devices and electroporation methods that may be used for facilitating delivery of the composition include those provided in co-pending and co-owned U.S. Patent
  • U.S. Patent No. 7,245,963 by Draghia-Akli, et al. describes modular electrode systems and their use for facilitating the introduction of a biomolecule into cells of a selected tissue in a body or plant.
  • the modular electrode systems may comprise a plurality of needle electrodes; a hypodermic needle; an electrical connector that provides a conductive link from a programmable constant-current pulse controller to the plurality of needle electrodes; and a power source.
  • An operator can grasp the plurality of needle electrodes that are mounted on a support structure and firmly insert them into the selected tissue in a body or plant.
  • the biomolecules are then delivered via the hypodermic needle into the selected tissue.
  • the programmable constant-current pulse controller is activated and constant-current electrical pulse is applied to the plurality of needle electrodes.
  • the applied constant-current electrical pulse facilitates the introduction of the biomolecule into the cell between the plurality of electrodes.
  • U.S. Patent Pub. 2005/0052630 submitted by Smith, et al. describes an electroporation device which may be used to effectively facilitate the introduction of a biomolecule into cells of a selected tissue in a body or plant.
  • the electroporation device comprises an electro-kinetic device ("EKD device") whose operation is specified by software or firmware.
  • the EKD device produces a series of programmable constant-current pulse patterns between electrodes in an array based on user control and input of the pulse parameters, and allows the storage and acquisition of current waveform data.
  • the electroporation device also comprises a replaceable electrode disk having an array of needle electrodes, a central injection channel for an injection needle, and a removable guide disk.
  • the electrode arrays and methods described in U.S. Patent No. 7,245,963 and U.S. Patent Pub. 2005/0052630 may be adapted for deep penetration into not only tissues such as muscle, but also other tissues or organs. Because of the configuration of the electrode array, the injection needle (to deliver the biomolecule of choice) is also inserted completely into the target organ, and the injection is administered perpendicular to the target issue, in the area that is pre-delineated by the electrodes
  • the electrodes described in U.S. Patent No. 7,245,963 and U.S. Patent Pub. 2005/005263 are preferably 20 mm long and 21 gauge.
  • electroporation devices that are those described in the following patents: US Patent 5,273,525 issued December 28, 1993, US Patents 6,110,161 issued August 29, 2000, 6,261,281 issued July 17, 2001, and 6,958,060 issued October 25, 2005, and US patent 6,939,862 issued September 6, 2005.
  • patents covering subject matter provided in US patent 6,697,669 issued February 24, 2004, which concerns delivery of DNA using any of a variety of devices, and US patent 7,328,064 issued February 5, 2008, drawn to method of injecting DNA are contemplated herein. The above-patents are incorporated by reference in their entirety. 14. Method of Treatment
  • the methods comprise administering one or more DMAb constructs such that a synthetic anti-MAYV antibody is generated in the subject.
  • the methods comprise administering one or more genetic constructs and proteins of the one or more MAYV antigens such that secreted proteins, or synthetic antigens, will be recognized as foreign by the immune system, which will mount an immune response that can include antibodies made against the one or more MAYV antigens.
  • the methods comprise administering one or more DMAb constructs and one or more genetic constructs and proteins of the one or more MAYV antigens.
  • administering a MAYV DMAb and a nucleic acid encoding a MAYV antigen provides an immediate, persistent and systemic anti-MAYV immune response.
  • the method can include administering the composition to the subject. Administration of the composition to the subject can be done using the method of delivery described above.
  • the invention provides a method of treating protecting against, and/or preventing a Mayaro Virus infection.
  • the method treats, protects against, and/or prevents a disease associated with Mayaro Virus.
  • the synthetic antibody can bind to or react with the antigen. Such binding can neutralize the antigen, block recognition of the antigen by another molecule, for example, a protein or nucleic acid, and elicit or induce an immune response to the antigen, thereby treating, protecting against, and/or preventing the disease associated with the antigen in the subject.
  • another molecule for example, a protein or nucleic acid
  • the method of delivering the vaccine or vaccination may be provided to induce a therapeutic and prophylactic immune response.
  • the vaccination process may generate in the mammal an immune response against the antigen.
  • the vaccine may be delivered to an individual to modulate the activity of the mammal's immune system and enhance the immune response.
  • the delivery of the vaccine may be the transfection of the consensus antigen as a nucleic acid molecule that is expressed in the cell and delivered to the surface of the cell upon which the immune system recognized and induces a cellular, humoral, or cellular and humoral response.
  • the delivery of the vaccine may be used to induce or elicit and immune response in mammals against the antigen by administering to the mammals the vaccine as discussed above.
  • the composition dose can be between 1 ⁇ g to 10 mg active component kg body weight/time, and can be 20 ⁇ g to 10 mg component/kg body weight/time.
  • the composition can be administered every 1 , 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 25, 26, 27, 28, 29, 30, or 31 days.
  • the number of composition doses for effective treatment can be 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
  • the composition can comprise 1 or more, 2 or more, 3 or more, 4 or more, 5 or more, 6 or more, 7 or more, 8 or more, 9 or more, or 10 or more DNA vaccines encoding an antigen.
  • the composition may comprise 1 or more, 2 or more, 3 or more, 4 or more, 5 or more, 6 or more, 7 or more, 8 or more, 9 or more, or 10 or more DNA encoded synthetic antibodies or fragments thereof.
  • the DNA vaccine and the DMAb may be administered at the same time or at different times. In one embodiment, the DNA vaccine and the DMAb are administered simultaneously. In one embodiment, the DNA vaccine is administered before the DMAb. In one embodiment, the DMAb is administered before the DNA vaccine.
  • the DNA vaccine is administered 1 or more days, 2 or more days, 3 or more days, 4 or more days, 5 or more days, 6 or more days, 7 or more days, 8 or more days, 9 or more days, 10 or more days, 1 1 or more days, 12 or more days, 13 or more days, or 14 or more days after the DMAb is administered. In certain embodiments, the DNA vaccine is administered 1 or more weeks, 2 or more weeks, 3 or more weeks, 4 or more weeks, 5 or more weeks, 6 or more weeks, 7 or more weeks, 8 or more weeks, 9 or more weeks, or 10 or more weeks after the DMAb is administered.
  • the DNA vaccine is administered 1 or more months, 2 or more months, 3 or more months, 4 or more months, 5 or more months, 6 or more months, 7 or more months, 8 or more months, 9 or more months, 10 or more months, 1 1 or more months, or 12 or more months after the DMAb is administered.
  • the DMAb is administered 1 or more days, 2 or more days, 3 or more days, 4 or more days, 5 or more days, 6 or more days, 7 or more days, 8 or more days, 9 or more days, 10 or more days, 11 or more days, 12 or more days, 13 or more days, or 14 or more days after the DNA vaccine is administered. In certain embodiments, the DMAb is administered 1 or more weeks, 2 or more weeks, 3 or more weeks, 4 or more weeks, 5 or more weeks, 6 or more weeks, 7 or more weeks, 8 or more weeks, 9 or more weeks, or 10 or more weeks after the DNA vaccine is administered.
  • the DMAb is administered 1 or more months, 2 or more months, 3 or more months, 4 or more months, 5 or more months, 6 or more months, 7 or more months, 8 or more months, 9 or more months, 10 or more months, 11 or more months, or 12 or more months after the DNA vaccine is administered.
  • the DMAb and DNA vaccine are administered once. In certain embodiments, the DMAb and/or the DNA vaccine are administered more than once. In certain embodiments, administration of the DMAb and DNA vaccine provides immediate, persistent, and systemic immune responses.
  • the composition dose can be between 1 ⁇ g to 10 mg active component kg body weight/time, and can be 20 ⁇ g to 10 mg component/kg body weight/time.
  • the composition can be administered every 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, or 31 days.
  • the number of composition doses for effective treatment can be 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
  • the present invention also provides a method of treating, protecting against, and/or preventing disease in a subject in need thereof by administering a combination of the synthetic antibody and a therapeutic antibiotic agent.
  • the synthetic antibody and an antibiotic agent may be administered using any suitable method such that a combination of the synthetic antibody and antibiotic agent are both present in the subject.
  • the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and administration of a second composition comprising an antibiotic agent less than 1, less than 2, less than 3, less than 4, less than 5, less than 6, less than 7, less than 8, less than 9 or less than 10 days following administration of the synthetic antibody.
  • the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and administration of a second composition comprising an antibiotic agent more than 1, more than 2, more than 3, more than 4, more than 5, more than 6, more than 7, more than 8, more than 9 or more than 10 days following administration of the synthetic antibody.
  • the method may comprise administration of a first composition comprising an antibiotic agent and administration of a second composition comprising a synthetic antibody of the invention by any of the methods described in detail above less than 1, less than 2, less than 3, less than 4, less than 5, less than 6, less than 7, less than 8, less than 9 or less than 10 days following administration of the antibiotic agent.
  • the method may comprise administration of a first composition comprising an antibiotic agent and administration of a second composition comprising a synthetic antibody of the invention by any of the methods described in detail above more than 1, more than 2, more than 3, more than 4, more than 5, more than 6, more than 7, more than 8, more than 9 or more than 10 days following administration of the antibiotic agent.
  • the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and a second composition comprising an antibiotic agent concurrently.
  • the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and a second composition comprising an antibiotic agent concurrently.
  • the method may comprise administration of a single composition comprising a synthetic antibody of the invention and an antibiotic agent.
  • Non-limiting examples of antibiotics that can be used in combination with the synthetic antibody of the invention include aminoglycosides (e.g., gentamicin, amikacin, tobramycin), quinolones (e.g., ciprofloxacin, levofloxacin), cephalosporins (e.g., ceftazidime, cefepime, cefoperazone, cefpirome, ceftobiprole), antipseudomonal penicillins:
  • aminoglycosides e.g., gentamicin, amikacin, tobramycin
  • quinolones e.g., ciprofloxacin, levofloxacin
  • cephalosporins e.g., ceftazidime, cefepime, cefoperazone, cefpirome, ceftobiprole
  • antipseudomonal penicillins e.g., gentamicin, amikac
  • carboxypenicillins e.g., carbenicillin and ticarcillin
  • ureidopenicillins e.g., mezlocillin, azlocillin, and piperacillin
  • carbapenems e.g., meropenem, imipenem, doripenem
  • polymyxins e.g., polymyxin B and colistin
  • monobactams e.g., aztreonam
  • the present invention has multiple aspects, illustrated by the following non-limiting examples.
  • the MAYV antigen is generated in vitro or ex vivo.
  • a nucleic acid encoding a MAYV antigen can be introduced and expressed in an in vitro or ex vivo cell.
  • the synthetic antibody is generated in vitro or ex vivo.
  • a nucleic acid encoding a synthetic antibody can be introduced and expressed in an in vitro or ex vivo cell.
  • the vector can be readily introduced into a host cell, e.g., mammalian, bacterial, yeast, or insect cell by any method in the art.
  • the expression vector can be transferred into a host cell by physical, chemical, or biological means.
  • Physical methods for introducing a polynucleotide into a host cell include calcium phosphate precipitation, lipofection, particle bombardment, microinjection, electroporation, and the like.
  • Methods for producing cells comprising vectors and/or exogenous nucleic acids are well-known in the art. See, for example, Sambrook et al. (2012, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, New York).
  • a preferred method for the introduction of a polynucleotide into a host cell is calcium phosphate transfection.
  • Biological methods for introducing a polynucleotide of interest into a host cell include the use of DNA and RNA vectors.
  • Viral vectors, and especially retroviral vectors have become the most widely used method for inserting genes into mammalian, e.g., human cells.
  • Other viral vectors can be derived from lentivirus, poxviruses, herpes simplex virus I, adenoviruses and adeno-associated viruses, and the like. See, for example, U. S. Pat. Nos. 5,350,674 and 5,585,362.
  • Chemical means for introducing a polynucleotide into a host cell include colloidal dispersion systems, such as macromolecule complexes, nanocapsules, microspheres, beads, and lipid-based systems including oil-in-water emulsions, micelles, mixed micelles, and liposomes.
  • colloidal dispersion systems such as macromolecule complexes, nanocapsules, microspheres, beads, and lipid-based systems including oil-in-water emulsions, micelles, mixed micelles, and liposomes.
  • An exemplary colloidal system for use as a delivery vehicle in vitro and in vivo is a liposome (e.g., an artificial membrane vesicle).
  • an exemplary delivery vehicle is a liposome.
  • lipid formulations is contemplated for the introduction of the nucleic acids into a host cell (in vitro, ex vivo or in vivo).
  • the nucleic acid may be associated with a lipid.
  • the nucleic acid associated with a lipid may be encapsulated in the aqueous interior of a liposome, interspersed within the lipid bilayer of a liposome, attached to a liposome via a linking molecule that is associated with both the liposome and the oligonucleotide, entrapped in a liposome, complexed with a liposome, dispersed in a solution containing a lipid, mixed with a lipid, combined with a lipid, contained as a suspension in a lipid, contained or complexed with a micelle, or otherwise associated with a lipid.
  • Lipid, lipid/DNA or lipid/expression vector associated compositions are not limited to any particular structure in solution.
  • Lipids are fatty substances which may be naturally occurring or synthetic lipids.
  • lipids include the fatty droplets that naturally occur in the cytoplasm as well as the class of compounds which contain long-chain aliphatic hydrocarbons and their derivatives, such as fatty acids, alcohols, amines, amino alcohols, and aldehydes.
  • the data presented herein describes a scMAYV-E vaccine which encodes a synthetically designed, consensus full-length MAYV envelope antigen sequence.
  • EP- enhanced delivery of scMAYV-E into immunocompetent mice induced high levels of cellular responses to multiple MAYV-E epitopes along with robust antibody responses that could neutralize MAYV infection in vitro.
  • Immunization of interferon a/b receptor knockout mice (IFNAR "/_ ; A129) with scMAYV-E protected the mice from morbidity and mortality following MAYV challenge, where the protection in this model was primarily due to vaccine- induced humoral responses.
  • the robust immunogenicity of the scMAYV-E vaccine demonstrates that this vaccine as a viable means to halt the spread of this virus and protect individuals from MAYV disease.
  • Human embryonic kidney 293T (HEK293T; ATCC-CLR-N268) and Vero CCL-81 (ATCC #CCL-81) (ATCC, Manassas, VA, USA) cells were cultured in D10 media:
  • Dulbecco Modified Eagle's Medium (Invitrogen Life Science Technologies, San Diego, CA, USA) supplemented with 10% heat-inactivated fetal calf serum (FCS), 3 mM glutamine, 100 U/ml penicillin, and 100 U/ml streptomycin (Muthumani et al, 2016, NPJ Vaccines 1: 16021).
  • Mouse splenocytes were cultured in RIO media: (RPMI1640, Invitrogen Life Science Technologies, San Diego, CA, USA) supplemented with 10% heat-inactivated FCS, 3 mM glutamine, 100 U/ml penicillin, and 100 U/ml streptomycin. All cell types were cultured in incubators set to 37°C and 5% CC .
  • the synthetic MAYV vaccine DNA construct encodes a full-length MAYV envelope sequence.
  • the consensus gene insert was computationally optimized for improved expression.
  • the construct was synthesized commercially (Genscript, NJ, USA) and then sub- cloned into a modified pVaxl vaccine expression vector under the control of the
  • HEK293T cells were plated in six-well plates at 6xl0 5 cells/well and transfected 24 hours later with scMAYV-E and pVaxl empty vector control plasmids using GeneJammer transfection reagent according to the manufacturer's instructions. The transfection was carried out in Opti-MEM medium. The transfected supernatants and cell lysates were collected 48 hours post transfection, and antigen expression was confirmed by western blot analysis.
  • HRP horseradish peroxidase
  • mice Five- to eight-week old female C57BL/6 mice (The Jackson Laboratory, Bar Harbor, ME, USA) were housed and vaccinated in a light-cycled, temperature- and humidity-controlled animal facility. Four- to six-week old mice of C57BL/6 background deficient in the interferon- ⁇ / ⁇ receptors (IFNAR "/_ , A129) were purchased from The Jackson Laboratory (MMRRC Repository-The Jackson Laboratory, USA).
  • IFNAR "/_ , A129 interferon- ⁇ / ⁇ receptors
  • mice For DNA immunization, five- to eight-week-old female C57BL/6 mice and four- to six- week old IFNAR _/" mice of mixed sex were delivered 25 ⁇ g of DNA in a total volume of 30 ⁇ of sterile water by a syringe into the anterior tibialis (TA) muscle. The same site is immediately electroporated by the CELLECTRA® adaptive constant current enhanced electroporation (EP) delivery device (Inovio Pharmaceuticals, PA, USA), where a three- pronged minimally invasive device is inserted 2 mm into the TA muscle.
  • EP constant current enhanced electroporation
  • Each prong consists of 26-gauge, solid stainless-steel electrode, and triangulated square-wave pulses of 0.1 Amps are delivered at 52 msec/pulse twice with a 1 second delay at the insertion site.
  • Blood was collected by the submandibular method preceding the DNA injection and EP procedure. All mice were anesthetized with 2-5% isoflurane (Phoenix, Clipper, MO, USA) during procedures. Each group received one, two, or three immunizations at 2-week intervals, and mice were euthanized one week following the last immunization.
  • Spleens were dissected and individually crushed with the use of a Stomacher device (Seward, UK). Splenocytes were strained with a 40 ⁇ cell strainer (ThermoFisher, USA) and treated 5 minutes with Ammonium-Chloride-Potassium (ACK) lysis buffer (Quality Biologicals, MD, USA) to lyse red blood cells. The splenocytes were resuspended in R10 and used in the Mouse IFN- ⁇ ELISpot PLUS assay (Mabtech, USA) according to the
  • Spots were formed by the addition of 5-bromo-4- chloro-3-indolyl-phosphate/nitro blue tetrazolium (BCIP/NBT) color development substrate (R&D Systems, USA). Spot forming units (SFU) were quantified by an automated ELISpot reader (CTL Limited, USA). The average number of SFU from the media alone wells was subtracted from each stimulated well, and the data was adjusted to SFU per 10 6 splenocytes.
  • BCIP/NBT 5-bromo-4- chloro-3-indolyl-phosphate/nitro blue tetrazolium
  • TMB Substrate (Sigma- Aldrich) was added per well and incubated for 10 minutes. The reaction was stopped by adding 50 ⁇ of 2 M H2SO4, and the optical density of the plate was measured at 450 nm by Biotek ELISA plate reader (Biotek, USA).
  • the antibody endpoint titer was defined as the highest dilution of a serum sample with OD values > (mean + 3SD) of pVaxl vaccinated mice. Samples with a titer ⁇ 50 were given an endpoint titer of 1. All assays were done in triplicate.
  • 2xl0 6 single-cell suspended mouse splenocytes were added per well to a U-bottom 96- well plate (ThermoFisher). Cells were stimulated for 5 hours at 37°C in 5% CO2, either in the presence of media alone (negative control), media with Cell Activation Cocktail
  • the cells were washed again with FACS buffer, then fixed and permeabilized using BD Cytofix/Cytoperm TM (BD Biosciences) per the manufacturer's protocol before the intracellular cytokines were stained using fluorchrome conjugated antibodies (BD Biosciences).
  • the following antibodies were used for surface staining: LIVE/DEAD Fixable Violet Dead Cell stain kit (Invitrogen); CD19 (V450; clone 1D3; BD Biosciences); CD4 (FITC; clone RM4-5; eBioscience); CD8a (APC-Cy7; clone 53-6.7; BD Biosciences); CD44 (A700; clone IM7; BioLegend).
  • IFN- ⁇ IFN- ⁇
  • PE clone MP6-XT22; eBioscience
  • CD3s PerCP/Cy5.5; clone 145-2C11; Biolegend
  • IL-2 PeCy7; clone JES6-SH4; ebioscience
  • the LSRII flow cytometer was outfitted with the following lasers and bandpass filters: (i) violet (405 nm) - 450/50, 525/50, 560/40, 585/42, 605/40, 660/40, 705/70, 780/60; (ii) blue (488 nm) - 530/30, 695/40; (iii) green (532 nm) - 575/25, 610/20, 660/20, 710/50, 780/60; and (iv) red (640nm) - 670/30, 710/50, 780/60.
  • the Trinidad Regional Virus Laboratory (TRVL) 15537 strain of MAYV was obtained from ATCC® (ATCC® VR-1863TM), passaged once through cell culture, and quantified as previously described (Weise et al, 2014, PLoS Negl Trop Dis 8(8):e2969; Santiago et al., PLoS Negl Trop Dis 9(10):e0004104).
  • TRVL Trinidad Regional Virus Laboratory
  • mice from either scMAYV-E vaccinated or pVaxl vaccinated groups were challenged with 10 2 plaque-forming units (PFU) of MAYV diluted in 100 ⁇ of sterile PBS delivered by a gradual intraperitoneal (i.p.) inoculation.
  • PFU plaque-forming units
  • Mice were weighed daily and evaluated for clinical signs of infection as follows: (1) decreased mobility; (2) hunched posture; (3) footpad swelling; (4) decreased grip strength of the hindlimb; (5) paralysis of hindlimb(s); (6) moribund.
  • the Wistar Institute IACUC does not approve death as an endpoint.
  • mice were euthanized if (1) weight loss was sustained for 3 days or more and total weight loss reaches 20% of the body weight, (2) mice exhibited 3 or more signs of clinical symptoms as listed above concurrently for over 3 days, or (3) mice were moribund. All mice that exhibited signs and symptoms of MAYV infection lasted no more than 7 days during the experiment(s).
  • Whole blood was collected on day 6 post challenge for Mayaro viral titer quantification as described previously (Weise et al, 2014, PLoS Negl Trop Dis 8(8):e2969; Santiago et al., PLoS Negl Trop Dis 9(10):e0004104), and the footpad swelling of individual mouse was measured with a caliper on the same day. Eight days post challenge, the number of surviving mice was noted and humanely euthanized. Passive transfer of immune sera from immunized IFNAR -/" to naive IFNAR -/" mice
  • mice Four- to six-week old IFNAR "7" mice were immunized twice at a two-week interval. One week after the second immunization, immune sera were isolated from whole blood and combined into a single pool per group. Passive transfer of immune sera was performed by intraperitoneal (i.p.) injection at 200 ⁇ per mouse into four- to six-week old naive IFNAR-/- mice. Mice receiving immune sera from the pVaxl immunized group or PBS served as negative controls. All groups were challenged with 10 2 PFU of wild-type TRVL 15537 strain of MAYV and monitored daily.
  • mice Four- to six-week old IFNAR "7" mice were immunized twice at a two-week interval. One week after the second immunization, all mice were euthanized, and spleens were collected and processed as single-cell suspensions. The cell viability was examined by Trypan Blue dye exclusion staining using a CountessTM II Automated Cell Counter
  • Adoptive transfer was performed by i.p. inoculation (2xl0 6 ⁇ 1 ⁇ 8/200 ⁇ 1) into four- to six-week old naive IFNAR-/- mice.
  • a group receiving splenocytes i.p. (200 ⁇ 1) from the pVaxl immunized mice or PBS served as negative controls. All groups were challenged with 10 2 PFU of wild-type TRVL 15537 strain of MAYV and monitored daily.
  • PRNT assay was carried out to detect and quantify the presence of neutralizing antibodies in the immunized mouse serum samples (Muthumani et al, 2016, J Infect Dis 214(3):369-78; Mallilankaraman et al, 2011 , PLoS Negl Trop Dis 5(l):e298; Wang et al, 2011 , J Virol 85(17):9249-52).
  • Heat-inactivated (56°C, 30 minutes) immune sera were diluted serially and 150 ⁇ of each diluted sample was mixed with an equal volume of 10 2 PFU of wild-type TRVL 15537 strain of MAYV, followed by incubation at 37°C for 1.5 hour for a virus-antibody neutralization reaction.
  • % reduction in infection ⁇ 1 -(number of plaques from serum samples / number of plaques from negative control) ⁇ xlOO.
  • Human monocyte-derived macrophages (MDM; lxl0 6 /well) were cultured in a 6-well plate in Macrophage Base Medium DXF (PromoCell GmbH, Germany) supplemented with 60 ng/mL of granulocyte- macrophage colony stimulating factor (GM-CSF) recombinant protein (R&D Systems, USA). The culture was incubated without disturbance at 37°C with 5% CO2 for 3 days, and MDMs were washed once with PBS prior to infection.
  • MDM Human monocyte-derived macrophages
  • GM-CSF granulocyte- macrophage colony stimulating factor
  • Vero CCL-81 cells plated on 12-well plates were inoculated with 200 ⁇ of supernatants from MAYV -infected MDMs that were previously pre-incubated MAYV with either pVaxl or scMAYV-E sera. After 36 hours of incubation, viability of the Vero CCL-81 cells was examined by Trypan Blue dye exclusion staining using a Countess TM II Automated Cell Counter (ThermoFisher). The assays were done in triplicates, and each dot represents the cell viability from a single well +/- SEM. The experiment was repeated twice.
  • Bioinformatics and synthetic DNA technologies were employed to create a novel DNA vaccine encoding a full-length MAYV envelope gene sequence comprised of the El, E2, and E3 glycoprotein domains as well as the 6K/TF polypeptides.
  • the synthetic DNA insert was created by aligning full-length envelope genomic sequences from multiple MAYV strains deposited in the GenBank-NCBI (National Center for Biotechnology Information) database and determining the most common conserved amino acid at each position.
  • Consensus antigen sequences account for genetic variability that occurs over time in a sequence and thus mapped at the phylogenetic midpoint (Figure 1A). Studies show that synthetic consensus sequences can focus immune responses against conserved sites as well as broaden T cell immunity (Muthumani et al, 2016, NPJ Vaccines 1 : 16021, Duperret et al, 2018, Mol Ther 26(2):435-45).
  • rEl recombinant MAYV-E1
  • Figure 2A The El glycoprotein is the immunodominant portion of MAYV envelope that is varied amongst alphaviruses, and the E2 region highly conserved; thus, the El domain was chosen for development over full-length envelope due to significant time and cost requirements needed to prepare the latter.
  • the consensus MAYV-E1 domain sequence was obtained from the scMAYV-E consensus described above and cloned into the pET30A E. coli expression vector (Muthumani et al, 2016, NPJ Vaccines 1: 16021).
  • the rEl protein was purified from transfected E. coli cultures using nickel column chromatography ( Figure 2B), and a pan alphavirus monoclonal antibody (clone: G77L; ThermoFisher) was used to verify the final rEl product by western analyses ( Figure 2C). Further confirmation of the identity of the purified protein was made using ELISA with sera collected from mice immunized with scMAYV-El or scMAYV-E DNA plasmids ( Figure 2D). Based on this result, this recombinant protein was utilized for investigating MAYV-specific humoral immunogenicity .
  • mice The immunogenicity of the scMAYV-E vaccine was evaluated in C57BL/6 mice. Initially, groups of mice were immunized three times, two weeks apart, with 25 ⁇ g of either scMAYV-E or an pVaxl empty vector plasmid using EP-enhanced i.m. delivery (Fisher et al., 2017, Gene Ther 24(12):757-67). Immunized mice were bled on day 0 and one week after each injection to obtain sera, which were assayed for the presence of antibodies to MAYV envelope using ELISA with the rEl protein.
  • Vero-CCL81 ( Figure 3D) and U-87 MG neuronal cells (Figure 3E) infected with the wild-type MAYV could be identified by indirect immunofluorescence assay using pooled day 35 sera from scMAYV-E immunized mice but not when using pooled day 35 pVaxl sera.
  • alphaviruses are known to infect macrophage cells, which are believed to play a role in alphavirus -induced arthritis (Herrero et al, 2013, Arthritis Rheum 65(10):2724-36; Haist et al., 2017, PLoS Pathog. 13(12):el006748).
  • an in vitro infection assay was performed. Addition of wild-type MAYV TRVL 15337 to human monocyte-derived macrophages (MDMs) decreased cell viability at 48 hours post infection (Figure 4A).
  • scMAYV-E induces potent antigen-specific cellular immune responses
  • IFN- ⁇ interferon gamma
  • SFUs spot forming units
  • splenocytes collected from the C57BL/6 mice receiving three immunizations of scMAYV-E as described above were evaluated by polychromatic flow cytometry.
  • a panel of fluorophore- tagged antibodies was created and used to characterize production of the activated-state cytokines such as IFN- ⁇ tumor necrosis factor-a (TNF-a), and interleukin 2 (IL-2), by helper (CD4 + ) and cytotoxic (CD8 + ) T cells present in bulk splenocytes from pVaxl or scMAYV-E immunized mice after ex vivo stimulation with all peptides comprising MAYV full-length envelope. Both CD4 + and CD8 + T cells isolated only from scMAYV-E vaccinated mice were able to produce each cytokine upon stimulation with MAYV peptides ( Figure 6A-B).
  • cytokines such as IFN- ⁇ tumor necrosis factor-a (TNF-a), and interleukin 2 (IL-2)
  • helper CD4 +
  • CD8 + T cells present in bulk splenocytes from pVaxl or scMAY
  • Vaccination also induced a large polyfunctional response in both T cell subsets (i.e., production of multiple activated-state cytokines) (Figure 6C). Combined with the ELISpot results, these results show that the scMAYV-E DNA vaccine both induces cellular immunity to MAYV and provides polyfunctionality of the antigen specific T cells.
  • mice were challenged on day 21, one week after the second immunization, with 10 2 PFU of wild-type MAYV and were checked daily for 8 days for clinical signs of infection. All 556 mice receiving pVaxl empty vector plasmid exhibited significant and progressive weight loss (Figure 7C). In contrast, mice vaccinated with scMAYV-E initially had minor weight loss over the first 4 days of challenge but exhibited slight weight gain after day 5 post challenge ( Figure 7C). Importantly, 100% of vaccinated mice survived the challenge, while all control mice met euthanasia criteria by 6-7 days post challenge (Figure 7D). They also had significant footpad swelling at day 6 post challenge (Fig 7E-F).
  • mice were immunized twice at a two-week interval with 25 ⁇ g of scMAYV-E or pVaxl.
  • mice were euthanized and blood and bulk splenocytes were collected from each animal. Sera and splenocytes from each group were pooled.
  • mice Cohorts of 6 naive, four- to six-week old IFNAR ⁇ mice were injected with either PBS, 200 ⁇ of pooled immune sera, or 2xl0 6 pooled splenocytes containing T cells, and subsequently challenged with 10 2 PFU of MAYV. Challenged mice were monitored for up to 8 days for clinical signs of disease. All mice receiving PBS prior to challenge progressively lost weight and were eventually euthanized due to severe disease as expected. Adoptive transfer of T cells from immunized mice provided some protection from weight loss (Figure 8A) and partial protection from disease (Figure 8B). Significantly, 100% of mice receiving immune sera from vaccinated mice exhibited no weight loss (Figure 8A) and all survived the challenge ( Figure 8B).
  • Mayaro virus is an emerging infectious disease agent endemic in tropical regions of South America, but recent evidence suggests that its range may be expanding into Central America and island nations of the Caribbean Sea (Rodriguez-Morales et al, 2017, Travel Med Infect Dis 15:72-3, Mackay et al, 2016, Microbes Infect 18(12):724-34).
  • the virus causes an acute febrile illness with symptoms including rash, headache, nausea, and diarrhea that can turn into a debilitating, long-term arthralgia in some patients after acute infection has cleared (El-Bacha et al., 2004, Mol Cell Biochem 266(1-2): 191-8; Lednicky et al, 2016, Emerg Infect Dis 22(l l):2000-2).
  • the data presented herein demonstrates the generation and immunogenicity of a synthetic, enhanced DNA vaccine encoding a novel consensus- designed sequence of the MAYV envelope protein.
  • the vaccine encoding MAYV envelope antigen sequence was designed to focus on conserved amino acids of the full-length envelope sequences to improve the specificity of the anti-MAYV immune responses induced by the vaccine.
  • the results show that scMAYV-E is a highly immunogenic vaccine candidate that warrants further testing in additional systems and animal models for developing countermeasures against MAYV infection and diseases.
  • the scMAYV-E DNA vaccine elicits both humoral and cellular responses against MAYV, and thus might be an important tool to provide comprehensive protection from MAYV infection and disease.
  • Antibodies to MAYV are generated after the initial priming immunization with scMAYV-E, and these responses increase after both one and two boosts in terms of binding capacity and affinity to rEl .
  • Immune sera from vaccinated mice was able to detect full-length MAYV envelope in scMAYV-E transfected cells as well as MAYV infected cells.
  • scMAYV-E vaccination of mice was able to induce neutralizing antibodies that can block viral entry and inhibit cell death induced by MAYV infection in human MDMs.
  • the anti-MAYV T cell response appears less important for an immediate protection against MAYV infection, it may still be essential for the prevention of chronic disease by eliminating virus -infected cells.
  • the cellular components induced by the scMAYV-E DNA vaccine target multiple epitopes along the full-length MAYV envelope glycoprotein. The strongest cellular responses were directed to epitopes in the E3+E2 glycoprotein domains of envelope, and the responses to epitopes in the El glycoprotein were less robust.
  • the ELISpot mapping studies conducted here identified two immunodominant epitopes, 'LAKCPPGEVISVSFV in the E3+E2 domain and 'GRSVIHFSTASAAPS' within the El glycoprotein, providing important and useful reagents for studies of the T cell immune response in this haplotype.
  • passive transfer of splenocytes from scMAYV-E immunized mice to susceptible naive IFNAR 7" mice prior to MAYV challenge provided partial protection from weight loss and clinical symptoms of MAYV disease, suggesting that MAYV-specific cellular responses do contribute to protection.
  • MAYV-specific T cells were not purified or enriched from bulk splenocytes prior to transfer, thus it is possible that the partial protection observed here could be enhanced with a larger dose of antigen-specific T cells.
  • the immunogenicity of the scMAYV-E DNA vaccine mirrors what were observed in a previous DNA vaccine candidate targeting chikungunya virus (CHIKV-E) which encodes a synthetic consensus sequence of the full-length chikungunya envelope protein
  • CHIKV-E vaccine was similarly able to generate humoral and cellular responses directed towards the CHIKV envelope protein, and these responses could protect mice from morbidity and mortality following a CHIKV challenge (Mallilankaraman et al, 2011, PLoS Negl Trop Dis
  • the synthetic DNA vaccines have some practical advantages for development including simplicity of production and stability at warmer temperatures, likely reducing the requirement for a cold chain. They are non-live and non-replicating and do not integrate, thus providing conceptual safety advantages as well. Since DNA vaccine vectors do not induce anti-vector serology, they can be administered multiple times with no loss of potency and without interfering with other vaccine protocols. Such logistical and safety advantages warrant further studies of this vaccine approach, especially pertaining to diseases prevalent in tropical settings like MAYV. scMAYV-E is the third vaccine candidate for MAYV developed.
  • the first vaccine was an inactivated Mayaro virus, and the second vaccine reported was a live-attenuated MAYV virus (Robinson et al, 1976, Mil Med 141(3): 163-6; Weise et al, 2014, PLoS Negl Trop Dis 8(8):e2969). Both prior vaccines were shown to induce anti-MAYV humoral responses that could protect mice from MAYV challenge, but neither study reported on the induction of cFwellular responses to MAYV.
  • the synthetic scMAYV-E DNA vaccine described here generates MAYV-specific humoral and cellular responses without replication, which is likely important for immune-challenged, young, pregnant, and elderly populations of potential travelers and residents in endemic areas in need of vaccine-induced immune protection.
  • Consensus MAYV-ENV DNA vaccines are rationally designed based on alphavirus phylogenetics. Antigen-specific cellular and humoral responses to Env-DNA vaccines are tested in vivo. Antibodies possessing functional activity undergo epitope mapping against MAYV Env proteins using overlapping peptide libraries. These analyses include the measurement of the cellular immunogenicity of DNA vaccine constructs in mice and specific memory responses.
  • Mayaro virus is a member of the Family Togaviridae .( alphavirus) Genetically its divided into two genotypes, “D” (widely Dispersed), “N” (New) and “L” (Limited).
  • MAYV-antibodies react to MAYV- Env or MAYV-Capsid antigen appear specific and react in western blot analysis. 100% Seroconversion is observed after a single immunization of MAYV-Env vaccine. Potent cellular immune responses are induced and dominant epitopes for each vaccine were characterized. Induction of polyfunctionality is also induced driving CD3 + /CD4 + and CD3 + /CD8 + T cells ( Figures 5, 7, 14-18).
  • mice which are lacking the type I interferon a/b receptor and thus prone to MAYV infection were immunized twice with 25 ⁇ g of control pVaxl or MAYV-Env vaccine at 2-week intervals into the quadriceps muscles by i.m injection with electroporation. Animals were challenged on day 21, one week after the second immunization with 1 ⁇ 102 plaque-forming units (PFU) of MAYV virus (VR1277 viral strain) and were checked daily for clinical signs of infection. It was observed that 100% of MAYV-Env immunized mice were protected against infection (Figure 7 A), and that 100% of MAYV-Env immunized mice displayed no signs of weight loss (Figure 7B).
  • PFU plaque-forming units
  • Anti- Mayaro virus MAYV
  • DMAb DNA monoclonal antibodies
  • DMAb synthetic DNA vector platform
  • Plasmids are capable of producing detectable human anti-MAYV-Env-IgGl in serum on post DNA immunization. Results confirm plasmids are capable of directing IgG production ( Figure 15).
  • MAYV DMAbs provide preventative protection against lethal MAYV challenge and offer long-lasting preventative protection against MAYV infection. Further, MAYV DMAbs protect against MAYV-related diseases or disorders including weight loss and arthropathies.
  • Vaccination is known to exhibit a lag phase before generation of immunity; thus, there is a gap of time during infection before an immune response is in effect.
  • the following provides specific novel approaches that utilizes the benefit of vaccines and the native immune response along with a rapid generation of effective immunity using the DNA synthetic antibodies or dMabs.
  • a DNA based dMAb strategy induces rapid protection against an emerging viral infection, which can be combined with DNA vaccination providing a uniquely both short term and long-term protection against this emerging infectious disease.
  • Subjects administered anti-MAYV dMAbs are fully protected from viral challenge shortly after administration, whereas subjects do not survive infection following a single immunization with MAYV-DNA vaccine, owing presumably to an insufficient time to mount protective immunity.
  • MAYV-DNA provides complete protection after an immunization regimen followed by challenge at later time points.
  • a similar level of protection occurs in subjects administered a single dose of anti-MAYV dMAbs, although protection wanes over time.
  • the co-delivery of anti-MAYV dMAbs and MAYV- DNA produces rapid and persistent humoral and cellular immunity, suggesting that a combination approach can have additive or synergistic effects.
  • co-delivery of anti-MAYV dMAbs and MAYV-DNA are not antagonistic in terms of the development of short- or long-term protective immune responses.

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Abstract

Disclosed herein is a composition comprising a nucleic acid sequence encoding a Mayaro Virus antigen that elicits an immune response in a mammal. Also disclosed herein is a nucleic acid sequence encoding an anti-Mayaro Virus antibody, a fragment thereof, a variant thereof. Also disclosed herein is a method of generating a synthetic antibody in a subject by administering the composition to the subject. The disclosure also provides a method of preventing and/or treating a Mayaro virus infection in a subject using said composition and method of generation.

Description

MAYARO VIRUS CONSENSUS ANTIGENS, DNA ANTIBODY CONSTRUCTS FOR USE AGAINST MAYARO VIRUS, AND COMBINATIONS THEREOF
CROSS REFERENCE TO RELATED APPLICATIONS
This application is entitled to priority to U.S. Provisional Application No. 62/571,487, filed October 12, 2017, U.S. Provisional Application No. 62/571,497, filed October 12, 2017, and U.S. Provisional Application No. 62/571,514, filed October 12, 2017, each of which is incorporated by reference herein in its entirety.
TECHNICAL FIELD
The present invention relates to compositions comprising an immunological Mayaro virus antigen, compositions comprising a recombinant nucleic acid sequence for generating one or more synthetic antibodies, and functional fragments thereof, in vivo, and combinations thereof. The compositions of the invention provide improved methods for inducing immune responses, and for prophylactically and/or therapeutically immunizing individuals against Mayaro virus.
BACKGROUND
Mayaro virus (MAYV) is an emerging mosquito-transmitted alphavirus that causes signs and symptoms including an acute febrile illness and rash. However, it may also cause incapacitating arthralgias that develop into persistent, severe joint pain which continues for years after infection. MAYV is typically found in South America, but has recently been reported in the Caribbean Sea, as well as in travelers returning to the USA and Europe. Past epidemics have been associated with mosquito vectors, such as those in the genus
Haemagogus, that are not likely to sustain transmission in humans, but concerns over the potential emergence of urban transmission were raised after a laboratory study showed that vector competence in Aedes mosquitoes is possible. There is a risk for endemic establishment within neotropical and subtropical regions inhabited by Aedes, as well as within temperate areas of the U.S. that are populated by this anthropophilic vector. Humans experience high- titer viremia after infection with MAYV, and an urban cycle of transmission may develop that is identical to what has been seen for DENV, ZIKV, and CHIKV, where a single viremic traveler could initiate endemic or epidemic MAYV transmission. The dramatic spread of DENV since 1980 and the recent spread of CHIKV and ZIKV throughout tropical America, via the same vectors and human hosts, underscores the risk to public health in the Americas. Despite its importance as an emerging virus, there are no licensed vaccines to prevent Mayaro infection, nor therapeutics to treat it.
Thus, there is need in the art for improved therapeutics that prevent and/or treat Mayaro virus infection. The current invention satisfies this need.
SUMMARY
The present invention is directed to combinations of one or more nucleic acid molecules encoding one or more anti-MAYV synthetic antibodies and one or more or more nucleic acid molecules encoding one or more MAYV antigens.
In one embodiment, the present invention provides a composition comprising a first nucleic acid sequence wherein the nucleic acid sequence encodes a Mayaro Virus (MAYV) antigen and a second nucleic acid sequence encoding one or more anti-MAYV synthetic antibodies or fragments thereof or one or more anti-MAYV monoclonal antibodies.
In one embodiment, the MAYV antigen comprises an antigen selected from the group consisting of MAYV -El, MAYV-E2, MAYV-E3, MAYV-6K and MAYV-Capsid (CA).
In one embodiment, MAYV-CA comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 104, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104, a fragment of SEQ ID NO: 104 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104. In one embodiment, the nucleic acid molecule encoding MAYV-CA comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 105, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105, a fragment of SEQ ID NO: 105 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105.
In one embodiment, MAYV -El comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 106, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106, a fragment of SEQ ID NO: 106 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106. In one embodiment, the nucleic acid molecule encoding MAYV -El comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 107, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107, a fragment of SEQ ID NO: 107 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107.
In one embodiment, MAYV-E2 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 108, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108, a fragment of SEQ ID NO: 108 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108. In one embodiment, the nucleic acid molecule encoding MAYV-E2 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 109, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109, a fragment of SEQ ID NO: 109 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109.
In one embodiment, MAYV-E3 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 110, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110, a fragment of SEQ ID NO: 110 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110. In one embodiment, the nucleic acid molecule encoding MAYV-E3 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 111, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111, a fragment of SEQ ID NO: 111 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111.
In one embodiment, MAYV-6K comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 112, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112, a fragment of SEQ ID NO: 112 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112. In one embodiment, the nucleic acid molecule encoding MAYV-6K comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 10, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 10, a fragment of SEQ ID NO: 113 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 113.
In one embodiment, the MAYV antigen comprises MAYV-E2 and MAYV-E3. In one embodiment, the MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 114, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114, a fragment of SEQ ID NO: 114 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114. In one embodiment, the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 115, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115, a fragment of SEQ ID NO: 115 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115.
In one embodiment, the MAYV antigen comprises MAYV-E1, MAYV-E2, MA YVES, and MAYV-6K. In one embodiment, the MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 116, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116, a fragment of SEQ ID NO: 116 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116. In one embodiment, the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 117, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117, a fragment of SEQ ID NO: 117 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117.
In one embodiment, the composition further comprises a nucleic acid sequence further comprising a nucleic acid sequences that encode one or more proteins selected from the group consisting of: IL-12, IL-15 and IL-28. In one embodiment, the MAYV antigen is linked to an IgE leader sequence.
In one embodiment, the one or more anti-MAYV synthetic antibodies binds to a MAYV antigen. In one embodiment, the MAYV antigen is selected from the group consisting of MAYV-Capsid, MAYV-E1, MAYV-E2, MAYV-E3, MAYV-6K, and any combination thereof. In one embodiment, the MAYV antigen comprises an amino acid sequence selected from EGHYNWHYGAVQYTG (SEQ ID NO: 101),
GRSVIHFSTASAAPS (SEQ ID NO: 102) and LAKCPPGEVISVSFV (SEQ ID NO: 103).
In one embodiment, the second nucleic acid sequence further comprising a nucleotide sequence encoding a cleavage domain.
In one embodiment, the second nucleic acid sequence encodes an anti- MAYV antibody.
In one embodiment, the second nucleic acid sequence comprises a nucleotide sequence encoding an amino acid sequence at least 90% homologous to SEQ ID NO: l or 3. the second nucleic acid sequence comprises a nucleotide sequence at least 90% homologous to SEQ ID NO:2 or 4.
In one embodiment, the second nucleic acid sequence comprises a nucleotide sequence encoding an anti- MAYV heavy chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16. In one embodiment, the second nucleic acid sequence comprises a sequence encoding an anti- MAYV light chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
In one embodiment, the second nucleic acid sequence comprises sequence encodes a leader sequence.
In one embodiment, the one or more anti-MAYV monoclonal antibodies comprises a heavy chain and a light chain, wherein the heavy chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16 and the light chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
The present invention also provides methods for inducing an immune response by administering a combination of one or more nucleic acid molecules encoding one or more anti-MAYV synthetic antibodies and one or more or more nucleic acid molecules encoding one or more MAYV antigens. In some embodiments, immune response is an anti-MAYV immune response. In some embodiments, the immune response is persistent. In some embodiments, the immune response is immediate. In some embodiments, the immune response is systemic.
The present invention also provides methods for preventing or treating a disease in a subject. In one embodiment, the disease is a Mayaro virus infection. In one embodiment, the method comprises administering to the subject the composition of the invention.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1, comprising Figure 1A through Figure IE, depicts the development and characterization of a synthetic consensus Mayaro DNA vaccine. Figure 1A depicts phylogenic analysis based on neighbor joining evaluation of MAYV-envelope sequences deposited in GenBank. The position of the scMAYV-E vaccine sequence in this tree is noted with an asterisk '*' Figure IB depicts a schematic of the scMAYV-E vaccine construct generated. scMAYV-E encodes all three envelope glycoproteins (El, E2, and E3) and the 6K/TF polypeptide linked by protease cleavage sites. The IgE-leader sequence was inserted at the 5' end to increase protein expression. Figure 1C depicts computer-generated MAYV antigen model. Figure ID depicts a view of El showing fusion loop in cyan. The fusion loop is generally conserved among the alphaviruses. E3 (transparent red) is shown to provide orientation. The highly conserved MWGG sequence is visible at the loop's rightmost position. The M residue is buried and predicted to interact with nearby TYR and PRO residues of E2. The backbone portion of M participates in H-bonds with the nearby G at position i+3 to form a b-tum. Figure IE depict western analyses of lysates from scMAYV-E or pVaxl transfected 293T cells incubated with pooled day 35 sera from scMAYV-E immunized mice. A lane shown left of the ladder represents 2 μg of rEl probed with the same pooled day 35 sera from scMAYV-E-vaccinated mice.
Figure 2, comprising Figure 2A through Figure 2D, depicts generation of recombinant MAYV-E1 (rEl) protein. Figure 2A depicts MAYV-E1 from the consensus full-length envelope sequence of scMAYV-E cloned downstream of a 6x His Tag in the pET-30a ?. coli expression vector. Lysates from E. coli transfected with the pET-30a MAYV-E1 plasmid were subjected to nickel chromatography to isolate and purify recombinant MAYV-E1 (rEl) protein after which the 6xHis tag was removed. Figure 2B depicts pooled purified proteins collected from the nickel columns run on a SDS-PAGE gel and subjected to silver staining. Lane 1 signifies crude pooled-El proteins. Lane 2 indicates the purified pooled-El proteins. Bands at expected MW of rEl are shown. Figure 2C depicts western blot analysis of pooled purified protein collected from nickel columns ran on a 12% SDS-PAGE gel and transferred to a nitrocellulose membrane subsequently blotted with a pan-alphavirus monoclonal antibody (ThermoFisher; clone: G77L) and IRDye800-tagged anti-mouse secondary antibody, scanned on the Licor Odyssey system. Figure 2D depicts ELISA of sera from scMAYV-El or scMAYV-E immunized individual mice (n=4) using rEl as a capture antigen for both groups.
Figure 3, comprising Figure 3A through Figure 3F, depicts experimental results demonstrating scMAYV-E vaccine induces a robust, MAYV-specific humoral response in mice including neutralizing antibodies. Figure 3A depicts ELISA of sera from scMAYV-E immunized mice. C57BL/6 mice (n=4) were immunized three times using EP-enhanced i.m. injection with 25 μg of scMAYV-E or pVaxl empty vector plasmid at 2-week intervals with sera collected one week after each immunization. Half-log dilutions of sera from individual mice were evaluated for their binding capacity to a recombinant MAYV-E1 (rEl) capture antigen. Figure 3B depicts rEl -specific IgG endpoint titers of scMAYV-E vaccinated mouse sera after each immunization. The antibody endpoint titer was defined as the highest dilution of a serum sample with OD values > (mean + 3SD) of pVaxl vaccinated mice. Samples with a titer <50 were given an endpoint titer of 1. Figure 3C depicts IgG subclass isotyping of C57BL/6 pVaxl mouse sera and scMAYV-E mouse sera one week post third immunization (day 35). IgGl, IgG2a, IgG2b, and IgG3 for both groups shown (n=4). Figure 3D depicts an indirect immunofluorescence assay of MAYV -infected Vero cells incubated with pooled day 35 sera from pVaxl or scMAYV-E immunized mice followed by FITC-tagged anti-mouse IgG secondary antibody (green) and DAPI (blue) to identify nuclei. Figure 3E depicts an indirect immunofluorescence assay of MAYV -infected U87 neuronal cells incubated with pooled day 35 sera from scMAYV-E DNA immunized mice followed by FITC-tagged anti- mouse IgG secondary antibody (green) and DAPI (blue) to identify nuclei. Figure 3F depicts a plaque reduction neutralization assay (PRNT50) of heat-inactivated pooled day 35 sera from uninfected naive, pVaxl, or scMAYV-E immunized mice. Serial two-fold dilutions of sera were incubated with 102 PFU of MAYV for 1.5 hours and then added to wells of confluent Vero cells. Plaque formation in wells was scored at 3 days post infection and % reduction of plaque formation was calculated in comparison to plaques formed in wells receiving virus only. PRNT50 value is calculated by a non-linear regression analysis using PRISM software.
Figure 4, comprising Figure 4A through Figure 4D, depicts experimental results demonstrating scMAYV-E immune sera protect monocyte derived macrophages (MDMs) from MAYV infection-induced cell death. Figure 4A depicts phase contrast images of MAYV -infected MDMs over time. Magnification: x20. Figure 4B depicts phase contrast and fluorescent images of MDMs infected with MAYV preincubated with immune sera. 3-day - old cultures of MDMs were treated with DMEM media only, MAYV plus pVaxl sera, or MAYV preincubated with 1 : 100 dilution of pooled day 35 (post third immunization) immune sera from scMAYV-E immunized mice. After 48 hours of co-culture, the cells were fixed, permeabilized, and stained with Live Cell Labeling Kit-Green Fluorescence-Cytopainter, which stains only live cells with Labelling Dye Green. Magnification: *40. Figure 4C depicts a histogram comparing the percentage of live cells in the control and experimental groups evaluated by Labelling Dye Green signals from six independent evaluations of the infected MDMs in Fig. 4B. Figure 4D depicts percent viability of Vero CCL-81 cells inoculated 36 hours with supernatants from the infected MDM cultures from experiments described in Fig. 4B. The cell viabilities of Vero cells were assessed by Trypan Blue dye exclusion staining using a Countess™ II Automated Cell Counter. Each dot represents the cell viability from a single well +/- SEM counted in triplicates.
Figure 5, comprising Figure 5A through Figure 5C, depicts experimental results demonstrating scMAYV-E induces a robust antigen specific cellular immune response to multiple epitopes in mice. C57BL/6 mice were immunized with 25 μg of either pVaxl empty vector or scMAYV-E plasmid once and euthanized 2 weeks later, or three times at 2-week intervals then euthanized one week after the last immunization. Splenocytes were harvested and cultured overnight in the presence of linear peptide pools spanning the full-length envelope protein. Figure 5A depicts an IFN-g ELISpot assay used to measure IFN-g- producing spot-forming units (SFUs) generated per 106 splenocytes +/- SEM. Figure 5B depicts IFN-g ELISpot assay performed on splenocytes from immunized animals after ex vivo stimulation with matrix peptide pools spanning the El protein. Figure 5C depicts IFN-g ELISpot assay performed on splenocytes from immunized animals after ex vivo stimulation with matrix peptide pools spanning the E3+E2 proteins. Average IFN-g SFUs generated per 106 splenocytes +/- SEM for each peptide pool shown. The immunodominant epitopes in El and E3+E2 identified via the matrix peptide pools are indicated with arrows.
Figure 6, comprising Figure 6A through Figure 6C, depicts experimental results demonstrating scMAYV-E induces both CD4+ and CD8+ T cell responses in mice. Figure 6A depicts evaluation of splenocytes from immunized mice by polychromatic flow cytometry to identify the frequency of CD4+ T cells that produce the cytokines IFN-g, IL-2, and TNF-a following a 5-hour ex vivo stimulation with pooled MAYV envelope peptides spanning the entire length of the envelope protein. Figure 6B depicts evaluation of splenocytes from immunized mice by polychromatic flow cytometry to identify the frequency of CD8+ T cells that produce the cytokines IFN-g, IL-2, and TNF-a following a 5 hour ex vivo stimulation with pooled MAYV envelope peptides spanning the entire length of the envelope protein. One representative experiment of three is shown in Figure 6A and 6B. Figure 6C depicts the frequency of total CD4+ and CD8+ T cells expressing each of the seven analyzed
combinations of IFN-g, TNF-a, and IL-2 using Boolean gating is shown as bar graphs. The pie charts represent the proportion of CD4+ and CD8+ T cells producing one, two, or all three cytokines.
Figure 7, comprising Figure 7A through Figure 7G, depicts experimental results demonstrating scMAYV-E protects immunized mice from MAYV challenge. IFNAR" " mice aged 4-6 weeks old were immunized twice, two weeks apart with pVaxl or scMAYV-E using EP-enhanced i.m. injection. Groups of mice for immunogenicity studies were euthanized one week after the final immunization. Figure 7A depicts evaluation of cellular responses in vaccinated IFNAR" " mice. IFN-g ELISpot of pVaxl or scMAYV-E immunized splenocytes is shown (n=4). Figure 7B depicts evaluation of humoral responses in vaccinated IFNAR"7" mice. Binding ELISA of pVaxl or scMAYV-E immunized sera is shown using rEl as a capture antigen (n=4). Groups of mice for challenge were then injected intraperitoneally (i.p.) one week after the second immunization (day 21) with 102 PFU of MAYV TRVL 15537. All mice were observed daily for clinical signs of disease up to 8 days post challenge. Figure 7C depicts the percent change in bodyweight from day 0 in individual immunized mice post challenge (n=10). Figure 7D depicts a Kaplan-Meier survival curve of scMAYV-E or pVaxl immunized mice for 8 days post-MAYV challenge (n=10). Figure 7E depicts representative pictures of rear footpad of uninfected mouse (naive), pVaxl immunized mouse (Infected/pVaxl), and scMAYV-E immunized mouse (Infected/scMAYV-E) at 6 days post challenge. Figure 7F depicts the quantification of rear footpad size as measured by a caliper on day 6 post-MAYV challenge (n=6 pVaxl; n=8 scMAYV-E). (G) MAYV PFU/ml in sera collected from pVaxl and scMAYV-E immunized mice at day 6 post MAYV challenge (n=8).
Figure 8, comprising Figure 8A and Figure 8B, depicts experimental results demonstrating scMAYV-E induced humoral responses drive protection from MAYV challenge. IFNAR /_ mice aged 4-6 weeks were immunized twice with 25 μg of scMAYV-E two weeks apart using EP-enhanced i.m. injection then euthanized one week after last immunization; immune sera and bulk splenocytes were collected. A naive batch of IFNAR"7" mice of mixed sex aged 4-6 weeks were divided into three groups and injected i.p. with 1) 200 μΐ of immune sera from scMAYV-E immunized mice, 2) 2xl06 bulk splenocytes from scMAYV-E immunized mice, or 3) PBS as a negative control. One hour post passive transfer, all mice were challenged with 102 PFU of MAYV TRVL 15537 and observed daily for clinical signs of disease up to 8 days post challenge (n=6). Figure 8A depicts the percent change in bodyweight from day 0 shown for individual mice in each group. Figure 8B depicts a Kaplan-Meier survival curve for each group.
Figure 9 depicts the Mayaro Virus DNA vaccine approach.
Figure 10 depicts the characterization of MAYV -Vaccine by Western blot analysis.
Figure 11 depicts an immunofluorescence assay demonstrating that IgG generated from MAYV-Env administered mice was capable of binding to MAYV-infected Vero cells.
Figure 12 depicts the development, expression, purification, and characterization of MAYV -Envelope Protein- (El) purification.
Figure 13 depicts the design of MAYV vaccine immunization studies in mice.
Figure 14 depicts experimental results demonstrating cellular immune responses induction by MAYV-Capsid and the MHC-class 1 binding prediction. Figure 15 depicts the functional profile of CD4+ and CD8+ T cell responses elicited by MAYV-Capsid vaccine.
Figure 16 depicts experimental results demonstrating cellular immune responses elicited by MAYV-Env vaccines.
Figure 17 depicts experimental results demonstrating the functional profile of CD4+ and CD8+ T cell responses elicited by MAYV-Env vaccine.
Figure 18 depicts experimental results demonstrating induction of antibodies in mice- MAYV-Env Vaccine.
Figure 19 depicts the construction of DNA-based monoclonal antibody (DMAb) against MAYV-Env.
Figure 20 depicts the expression of MAYV-DMAb and IgG quantification.
DETAILED DESCRIPTION
In one embodiment, the invention provides composition comprising one or more nucleotide sequences encoding one or more Mayaro virus (MAYV) antigens and one or more nucleotide sequences encoding one or more anti- MAYV synthetic antibodies or fragments thereof.
In one embodiment, the invention provides a composition comprising a combination of a composition that elicits an immune response in a mammal against a MAYV antigen and a composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof.
In one embodiment, the recombinant nucleic acid sequence encoding an anti-MAYV antibody comprises sequences that encode a heavy chain and light chain. In particular, the heavy chain and light chain polypeptides expressed from the recombinant nucleic acid sequences can assemble into the synthetic antibody. The heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being capable of binding a MAYV antigen, being more immunogenic as compared to an antibody not assembled as described herein, and being capable of eliciting or inducing an immune response against the MAYV antigen.
Additionally, these synthetic antibodies are generated more rapidly in the subject than antibodies that are produced in response to antigen induced immune response. The synthetic antibodies are able to effectively bind and neutralize a range of MAYV antigens. The synthetic antibodies are also able to effectively protect against and/or promote survival of MAYV infection and disease.
Another aspect of the present invention provides nucleic acid vaccines, such as DNA plasmid vaccines, that are capable of generating in a mammal an immune response against a MAYV antigen. The nucleic acid vaccines are comprised of a nucleic acid capable of expressing a MAYV antigen in a mammal. The nucleic acid is comprised of a promoter operably linked to a coding sequence that encodes the MAYV antigen.
The present invention also provides methods for inducing an immune response by administering a combination of one or more nucleic acid molecules encoding one or more anti-MAYV synthetic antibodies and one or more or more nucleic acid molecules encoding one or more MAYV antigens. In some embodiments, immune response is an anti-MAYV immune response. In some embodiments, the immune response is persistent. In some embodiments, the immune response is immediate. In some embodiments, the immune response is systemic.
1. Definitions
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art. In case of conflict, the present document, including definitions, will control. Preferred methods and materials are described below, although methods and materials similar or equivalent to those described herein can be used in practice or testing of the present invention. All publications, patent applications, patents and other references mentioned herein are incorporated by reference in their entirety. The materials, methods, and examples disclosed herein are illustrative only and not intended to be limiting.
The terms "comprise(s)," "include(s)," "having," "has," "can," "contain(s)," and variants thereof, as used herein, are intended to be open-ended transitional phrases, terms, or words that do not preclude the possibility of additional acts or structures. The singular forms "a," "and" and "the" include plural references unless the context clearly dictates otherwise. The present disclosure also contemplates other embodiments, "comprising," "consisting of and "consisting essentially of," the embodiments, or elements presented herein, whether explicitly set forth or not.
"Antibody" may mean an antibody of classes IgG, IgM, IgA, IgD or IgE, or fragments, fragments or derivatives thereof, including Fab, F(ab')2, Fd, and single chain antibodies, and derivatives thereof. The antibody may be an antibody isolated from the serum sample of mammal, a polyclonal antibody, affinity purified antibody, or mixtures thereof which exhibits sufficient binding specificity to a desired epitope or a sequence derived therefrom.
"Antibody fragment" or "fragment of an antibody" as used interchangeably herein refers to a portion of an intact antibody comprising the antigen-binding site or variable region. The portion does not include the constant heavy chain domains (i.e. CH2, CH3, or CH4, depending on the antibody isotype) of the Fc region of the intact antibody. Examples of antibody fragments include, but are not limited to, Fab fragments, Fab' fragments, Fab'-SH fragments, F(ab')2 fragments, Fd fragments, Fv fragments, diabodies, single-chain Fv (scFv) molecules, single-chain polypeptides containing only one light chain variable domain, single- chain polypeptides containing the three CDRs of the light-chain variable domain, single- chain polypeptides containing only one heavy chain variable region, and single-chain polypeptides containing the three CDRs of the heavy chain variable region.
"Antigen" refers to proteins that have the ability to generate an immune response in a host. An antigen may be recognized and bound by an antibody. An antigen may originate from within the body or from the external environment.
"CDRs" are defined as the complementarity determining region amino acid sequences of an antibody which are the hypervariable regions of immunoglobulin heavy and light chains. See, e.g., Kabat et al, Sequences of Proteins of Immunological Interest, 4th Ed., U.S. Department of Health and Human Services, National Institutes of Health (1987). There are three heavy chain and three light chain CDRs (or CDR regions) in the variable portion of an immunoglobulin. Thus, "CDRs" as used herein refers to all three heavy chain CDRs, or all three light chain CDRs (or both all heavy and all light chain CDRs, if appropriate). The structure and protein folding of the antibody may mean that other residues are considered part of the antigen binding region and would be understood to be so by a skilled person. See for example Chothia et al, (1989) Conformations of immunoglobulin hypervariable regions; Nature 342, p 877-883.
"Coding sequence" or "encoding nucleic acid" as used herein may mean refers to the nucleic acid (RNA or DNA molecule) that comprise a nucleotide sequence which encodes an antibody as set forth herein. The coding sequence may also comprise a DNA sequence which encodes an RNA sequence. The coding sequence may further include initiation and termination signals operably linked to regulatory elements including a promoter and polyadenylation signal capable of directing expression in the cells of an individual or mammal to whom the nucleic acid is administered. The coding sequence may further include sequences that encode signal peptides.
"Complement" or "complementary" as used herein may mean a nucleic acid may mean Watson-Crick (e.g., A-T/U and C-G) or Hoogsteen base pairing between nucleotides or nucleotide analogs of nucleic acid molecules.
"Constant current" as used herein to define a current that is received or experienced by a tissue, or cells defining said tissue, over the duration of an electrical pulse delivered to same tissue. The electrical pulse is delivered from the electroporation devices described herein. This current remains at a constant amperage in said tissue over the life of an electrical pulse because the electroporation device provided herein has a feedback element, preferably having instantaneous feedback. The feedback element can measure the resistance of the tissue (or cells) throughout the duration of the pulse and cause the electroporation device to alter its electrical energy output (e.g., increase voltage) so current in same tissue remains constant throughout the electrical pulse (on the order of microseconds), and from pulse to pulse. In some embodiments, the feedback element comprises a controller.
"Current feedback" or "feedback" as used herein may be used interchangeably and may mean the active response of the provided electroporation devices, which comprises measuring the current in tissue between electrodes and altering the energy output delivered by the EP device accordingly in order to maintain the current at a constant level. This constant level is preset by a user prior to initiation of a pulse sequence or electrical treatment. The feedback may be accomplished by the electroporation component, e.g., controller, of the electroporation device, as the electrical circuit therein is able to continuously monitor the current in tissue between electrodes and compare that monitored current (or current within tissue) to a preset current and continuously make energy-output adjustments to maintain the monitored current at preset levels. The feedback loop may be instantaneous as it is an analog closed-loop feedback.
"Decentralized current" as used herein may mean the partem of electrical currents delivered from the various needle electrode arrays of the electroporation devices described herein, wherein the patterns minimize, or preferably eliminate, the occurrence of
electroporation related heat stress on any area of tissue being electroporated.
"Electroporation," "electro-permeabilization," or "electro-kinetic enhancement" ("EP") as used interchangeably herein may refer to the use of a transmembrane electric field pulse to induce microscopic pathways (pores) in a bio-membrane; their presence allows biomolecules such as plasmids, oligonucleotides, siRNA, drugs, ions, and water to pass from one side of the cellular membrane to the other.
"Endogenous antibody" as used herein may refer to an antibody that is generated in a subject that is administered an effective dose of an antigen for induction of a humoral immune response.
"Feedback mechanism" as used herein may refer to a process performed by either software or hardware (or firmware), which process receives and compares the impedance of the desired tissue (before, during, and/or after the delivery of pulse of energy) with a present value, preferably current, and adjusts the pulse of energy delivered to achieve the preset value. A feedback mechanism may be performed by an analog closed loop circuit.
"Fragment" may mean a polypeptide fragment of an antibody that is function, i.e., can bind to desired target and have the same intended effect as a full length antibody. A fragment of an antibody may be 100% identical to the full length except missing at least one amino acid from the N and/or C terminal, in each case with or without signal peptides and/or a methionine at position 1. Fragments may comprise 20% or more, 25% or more, 30% or more, 35% or more, 40% or more, 45% or more, 50% or more, 55% or more, 60% or more, 65% or more, 70% or more, 75% or more, 80% or more, 85% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, 99% or more percent of the length of the particular full length antibody, excluding any heterologous signal peptide added. The fragment may comprise a fragment of a polypeptide that is 95% or more, 96% or more, 97% or more, 98% or more or 99% or more identical to the antibody and additionally comprise an N terminal methionine or heterologous signal peptide which is not included when calculating percent identity. Fragments may further comprise an N terminal methionine and/or a signal peptide such as an immunoglobulin signal peptide, for example an IgE or IgG signal peptide. The N terminal methionine and/or signal peptide may be linked to a fragment of an antibody.
A fragment of a nucleic acid sequence that encodes an antibody may be 100% identical to the full length except missing at least one nucleotide from the 5' and/or 3' end, in each case with or without sequences encoding signal peptides and/or a methionine at position 1. Fragments may comprise 20% or more, 25% or more, 30% or more, 35% or more, 40% or more, 45% or more, 50% or more, 55% or more, 60% or more, 65% or more, 70% or more, 75% or more, 80% or more, 85% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, 99% or more percent of the length of the particular full length coding sequence, excluding any
heterologous signal peptide added. The fragment may comprise a fragment that encode a polypeptide that is 95% or more, 96% or more, 97% or more, 98% or more or 99% or more identical to the antibody and additionally optionally comprise sequence encoding an N terminal methionine or heterologous signal peptide which is not included when calculating percent identity. Fragments may further comprise coding sequences for an N terminal methionine and/or a signal peptide such as an immunoglobulin signal peptide, for example an IgE or IgG signal peptide. The coding sequence encoding the N terminal methionine and/or signal peptide may be linked to a fragment of coding sequence.
"Genetic construct" as used herein refers to the DNA or RNA molecules that comprise a nucleotide sequence which encodes a protein, such as an antibody. The genetic construct may also refer to a DNA molecule which transcribes an RNA. The coding sequence includes initiation and termination signals operably linked to regulatory elements including a promoter and polyadenylation signal capable of directing expression in the cells of the individual to whom the nucleic acid molecule is administered. As used herein, the term "expressible form" refers to gene constructs that contain the necessary regulatory elements operable linked to a coding sequence that encodes a protein such that when present in the cell of the individual, the coding sequence will be expressed.
"Identical" or "identity" as used herein in the context of two or more nucleic acids or polypeptide sequences, may mean that the sequences have a specified percentage of residues that are the same over a specified region. The percentage may be calculated by optimally aligning the two sequences, comparing the two sequences over the specified region, determining the number of positions at which the identical residue occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the specified region, and multiplying the result by 100 to yield the percentage of sequence identity. In cases where the two sequences are of different lengths or the alignment produces one or more staggered ends and the specified region of comparison includes only a single sequence, the residues of single sequence are included in the denominator but not the numerator of the calculation. When comparing DNA and RNA, thymine (T) and uracil (U) may be considered equivalent. Identity may be performed manually or by using a computer sequence algorithm such as BLAST or BLAST 2.0. "Impedance" as used herein may be used when discussing the feedback mechanism and can be converted to a current value according to Ohm's law, thus enabling comparisons with the preset current.
"Immune response" as used herein may mean the activation of a host's immune system, e.g., that of a mammal, in response to the introduction of one or more nucleic acids and/or peptides. The immune response can be in the form of a cellular or humoral response, or both.
"Nucleic acid" or "oligonucleotide" or "polynucleotide" as used herein may mean at least two nucleotides covalently linked together. The depiction of a single strand also defines the sequence of the complementary strand. Thus, a nucleic acid also encompasses the complementary strand of a depicted single strand. Many variants of a nucleic acid may be used for the same purpose as a given nucleic acid. Thus, a nucleic acid also encompasses substantially identical nucleic acids and complements thereof. A single strand provides a probe that may hybridize to a target sequence under stringent hybridization conditions. Thus, a nucleic acid also encompasses a probe that hybridizes under stringent hybridization conditions.
Nucleic acids may be single stranded or double stranded, or may contain portions of both double stranded and single stranded sequence. The nucleic acid may be DNA, both genomic and cDNA, RNA, or a hybrid, where the nucleic acid may contain combinations of deoxyribo- and ribo-nucleotides, and combinations of bases including uracil, adenine, thymine, cytosine, guanine, inosine, xanthine hypoxanthine, isocytosine and isoguanine. Nucleic acids may be obtained by chemical synthesis methods or by recombinant methods.
"Operably linked" as used herein may mean that expression of a gene is under the control of a promoter with which it is spatially connected. A promoter may be positioned 5' (upstream) or 3' (downstream) of a gene under its control. The distance between the promoter and a gene may be approximately the same as the distance between that promoter and the gene it controls in the gene from which the promoter is derived. As is known in the art, variation in this distance may be accommodated without loss of promoter function.
A "peptide," "protein," or "polypeptide" as used herein can mean a linked sequence of amino acids and can be natural, synthetic, or a modification or combination of natural and synthetic.
"Promoter" as used herein may mean a synthetic or naturally-derived molecule which is capable of conferring, activating or enhancing expression of a nucleic acid in a cell. A promoter may comprise one or more specific transcriptional regulatory sequences to further enhance expression and/or to alter the spatial expression and/or temporal expression of same. A promoter may also comprise distal enhancer or repressor elements, which can be located as much as several thousand base pairs from the start site of transcription. A promoter may be derived from sources including viral, bacterial, fungal, plants, insects, and animals. A promoter may regulate the expression of a gene component constitutively, or differentially with respect to cell, the tissue or organ in which expression occurs or, with respect to the developmental stage at which expression occurs, or in response to external stimuli such as physiological stresses, pathogens, metal ions, or inducing agents. Representative examples of promoters include the bacteriophage T7 promoter, bacteriophage T3 promoter, SP6 promoter, lac operator-promoter, tac promoter, SV40 late promoter, SV40 early promoter, RSV-LTR promoter, CMV IE promoter, SV40 early promoter or SV 40 late promoter and the CMV IE promoter.
"Signal peptide" and "leader sequence" are used interchangeably herein and refer to an amino acid sequence that can be linked at the amino terminus of a protein set forth herein. Signal peptides/leader sequences typically direct localization of a protein. Signal
peptides/leader sequences used herein preferably facilitate secretion of the protein from the cell in which it is produced. Signal peptides/leader sequences are often cleaved from the remainder of the protein, often referred to as the mature protein, upon secretion from the cell. Signal peptides/leader sequences are linked at the N terminus of the protein.
"Stringent hybridization conditions" as used herein may mean conditions under which a first nucleic acid sequence (e.g., probe) will hybridize to a second nucleic acid sequence (e.g., target), such as in a complex mixture of nucleic acids. Stringent conditions are sequence dependent and will be different in different circumstances. Stringent conditions may be selected to be about 5-10°C lower than the thermal melting point (Tm) for the specific sequence at a defined ionic strength pH. The Tm may be the temperature (under defined ionic strength, pH, and nucleic concentration) at which 50% of the probes complementary to the target hybridize to the target sequence at equilibrium (as the target sequences are present in excess, at Tm, 50% of the probes are occupied at equilibrium). Stringent conditions may be those in which the salt concentration is less than about 1.0 M sodium ion, such as about 0.01- 1.0 M sodium ion concentration (or other salts) at pH 7.0 to 8.3 and the temperature is at least about 30°C for short probes (e.g., about 10-50 nucleotides) and at least about 60°C for long probes (e.g., greater than about 50 nucleotides). Stringent conditions may also be achieved with the addition of destabilizing agents such as formamide. For selective or specific hybridization, a positive signal may be at least 2 to 10 times background hybridization. Exemplary stringent hybridization conditions include the following: 50% formamide, 5x SSC, and 1% SDS, incubating at 42°C, or, 5x SSC, 1% SDS, incubating at 65°C, with wash in 0.2x SSC, and 0.1% SDS at 65°C.
"Subject" and "patient" as used herein interchangeably refers to any vertebrate, including, but not limited to, a mammal (e.g., cow, pig, camel, llama, horse, goat, rabbit, sheep, hamsters, guinea pig, cat, dog, rat, and mouse, a non-human primate (for example, a monkey, such as a cynomolgous or rhesus monkey, chimpanzee, etc) and a human). In some embodiments, the subject may be a human or a non-human. The subject or patient may be undergoing other forms of treatment.
"Substantially complementary" as used herein may mean that a first sequence is at least 60%, 65%, 70%, 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identical to the complement of a second sequence over a region of 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100 or more nucleotides or amino acids, or that the two sequences hybridize under stringent hybridization conditions.
"Substantially identical" as used herein may mean that a first and second sequence are at least 60%, 65%, 70%, 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%,or 99% over a region of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1100 or more nucleotides or amino acids, or with respect to nucleic acids, if the first sequence is substantially complementary to the complement of the second sequence.
"Synthetic antibody" as used herein refers to an antibody that is encoded by the recombinant nucleic acid sequence described herein and is generated in a subject.
"Treatment" or "treating," as used herein can mean protecting of a subject from a disease through means of preventing, suppressing, repressing, or completely eliminating the disease. Preventing the disease involves administering a vaccine of the present invention to a subject prior to onset of the disease. Suppressing the disease involves administering a vaccine of the present invention to a subject after induction of the disease but before its clinical appearance. Repressing the disease involves administering a vaccine of the present invention to a subject after clinical appearance of the disease. "Variant" used herein with respect to a nucleic acid may mean (i) a portion or fragment of a referenced nucleotide sequence; (ii) the complement of a referenced nucleotide sequence or portion thereof; (iii) a nucleic acid that is substantially identical to a referenced nucleic acid or the complement thereof; or (iv) a nucleic acid that hybridizes under stringent conditions to the referenced nucleic acid, complement thereof, or sequences substantially identical thereto.
"Variant" with respect to a peptide or polypeptide that differs in amino acid sequence by the insertion, deletion, or conservative substitution of amino acids, but retain at least one biological activity. Variant may also mean a protein with an amino acid sequence that is substantially identical to a referenced protein with an amino acid sequence that retains at least one biological activity. A conservative substitution of an amino acid, i.e., replacing an amino acid with a different amino acid of similar properties (e.g., hydrophilicity, degree and distribution of charged regions) is recognized in the art as typically involving a minor change. These minor changes can be identified, in part, by considering the hydropathic index of amino acids, as understood in the art. Kyte et al, J. Mol. Biol. 157: 105-132 (1982). The hydropathic index of an amino acid is based on a consideration of its hydrophobicity and charge. It is known in the art that amino acids of similar hydropathic indexes can be substituted and still retain protein function. In one aspect, amino acids having hydropathic indexes of ±2 are substituted. The hydrophilicity of amino acids can also be used to reveal substitutions that would result in proteins retaining biological function. A consideration of the hydrophilicity of amino acids in the context of a peptide permits calculation of the greatest local average hydrophilicity of that peptide, a useful measure that has been reported to correlate well with antigenicity and immunogenicity. U.S. Patent No. 4,554, 101 , incorporated fully herein by reference. Substitution of amino acids having similar hydrophilicity values can result in peptides retaining biological activity, for example immunogenicity, as is understood in the art. Substitutions may be performed with amino acids having hydrophilicity values within ±2 of each other. Both the hyrophobicity index and the hydrophilicity value of amino acids are influenced by the particular side chain of that amino acid. Consistent with that observation, amino acid substitutions that are compatible with biological function are understood to depend on the relative similarity of the amino acids, and particularly the side chains of those amino acids, as revealed by the hydrophobicity, hydrophilicity, charge, size, and other properties. A variant may be a nucleic acid sequence that is substantially identical over the full length of the full gene sequence or a fragment thereof. The nucleic acid sequence may be 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical over the full length of the gene sequence or a fragment thereof. A variant may be an amino acid sequence that is substantially identical over the full length of the amino acid sequence or fragment thereof. The amino acid sequence may be 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical over the full length of the amino acid sequence or a fragment thereof.
"Vector" as used herein may mean a nucleic acid sequence containing an origin of replication. A vector may be a plasmid, bacteriophage, bacterial artificial chromosome or yeast artificial chromosome. A vector may be a DNA or RNA vector. A vector may be either a self-replicating extrachromosomal vector or a vector which integrates into a host genome.
For the recitation of numeric ranges herein, each intervening number there between with the same degree of precision is explicitly contemplated. For example, for the range of 6- 9, the numbers 7 and 8 are contemplated in addition to 6 and 9, and for the range 6.0-7.0, the number 6.0, 6.1, 6.2, 6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, and 7.0 are explicitly contemplated.
2. Compositions
In one aspect, the present invention provides a combination of a composition that elicits an immune response in a mammal against a MAYV antigen with a composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof. The composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody can be administered to a subject in need thereof to facilitate in vivo expression and formation of a synthetic anti- MAYV antibody.
In one embodiment, the present invention relates to a combination of a first composition that elicits an immune response in a mammal against a MAYV antigen and a second composition comprising a recombinant nucleic acid sequence encoding an anti- MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof. I
In one embodiment, the first composition comprises a nucleic acid encoding one or more MAYV antigens. In one embodiment, the first composition comprises a nucleic acid vaccine, such as a DNA vaccine. In one embodiment, the first composition comprises a protein antigen, such as a MAYV antigen. In one embodiment, the second composition comprises a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof, or a combination thereof. The second composition, when administered to a subject in need thereof, can result in the generation of a synthetic anti-MAYV antibody in the subject. The synthetic antibody can bind a MAYV antigen present in the subject. Such binding can neutralize the antigen, block recognition of the antigen by another molecule, for example, a protein or nucleic acid, and elicit or induce an immune response to the antigen.
The synthetic antibody can treat, prevent, and/or protect against MAYV infection or MAYV associated disease in the subject administered the composition. The synthetic antibody by binding the MAYV antigen can treat, prevent, and/or protect against MAYV infection in the subject administered the composition. The synthetic antibody can promote survival of the subject administered the composition. The synthetic antibody can provide at least about 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 100% survival of the subject administered the composition. In other embodiments, the synthetic antibody can provide at least about 65%, 66%, 67%, 68%, 69%, 70%, 71%, 72%, 73%, 74%, 75%, 76%, 77%, 78%, 79%, or 80% survival of the subject administered the composition.
Another aspect of the present invention provides nucleic acid vaccines that are capable of generating in a mammal an immune response against a MAYV antigen. The nucleic acid vaccines are comprised of a nucleotide sequence capable of expressing a consensus antigen in the mammal and a pharmaceutically acceptable excipient. For example, in one embodiment, the nucleic acid vaccine is a DNA plasmid vaccine. The DNA plasmid is comprised of a promoter operably linked to a coding sequence that encodes the consensus MAYV antigen.
In one embodiment, the compositions of the invention, when administered, generate an immediate and persistent immune responses. For example, in one embodiment, the first composition comprising a nucleic acid encoding one or more MAYV antigens generates a persistent immune response. In one embodiment, the second composition comprising a recombinant nucleic acid sequence encoding an anti-MAYV antibody, a fragment thereof, a variant thereof generates an immediate immune response. In some embodiments, the immune response is an anti-MAYV immune response.
3. Protein Antigens
Provided herein are antigens capable of eliciting an immune response in a mammal against one or more Mayaro virus (MAYV) subtypes. In one embodiment, the MAYV antigens described herein can be used to induce broad immunity against multiple subtypes or serotypes of Mayaro virus. In some embodiments, the MAYV antigen includes a MAYV capsid (CA) protein or MAYV-envelope (ENV) protein, a consensus thereof, a variant thereof, a fragment thereof or a combination thereof. For example, in some embodiments, the MAYV antigen includes MAYV-CA, MAYV -El, MAYV-E2, MAYV-E3, MAYV-6K, a consensus thereof, a variant thereof, a fragment thereof or any combination thereof. In one embodiment, antigen includes MAYV-E3 and MAYV-E2 or MAYV -El and MAYV-E2. In one embodiment, antigen includes MAYV-E3, MAYV-E2, MAYV-6K and MAYV -El.
In one embodiment, the sequences of the MAYV antigen include SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116 and variants thereof, and fragments of SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116, and variants thereof, optionally including a signal peptide such as for example an IgE or IgG signal peptide.
In some embodiments, the immunogens may comprise a signal peptide from a different protein such as an immunoglobulin protein, for example an IgE signal peptide or an IgG signal peptide. For example, in one embodiment, the MAYV antigen linked to a signal peptide may comprise a sequence of SEQ ID NOs: 118, 120, 122, 124, 126, 128, 130, and fragments or variants thereof.
Fragments of a full-length MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the amino sequences set forth below
In one embodiment, the MAYV antigen comprises MAYV-CA, a consensus thereof, a variant thereof, or a fragment thereof. In one embodiment, the MAYV-CA antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104. In one embodiment, the MAYV antigen comprises a fragment of a MAYV-CA. In one embodiment, the fragment of MAYV-CA can comprise a fragment of SEQ ID NO: 104. In one
embodiment, the fragment of a MAYV-CA antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104. In one embodiment, the fragment of MAYV-CA can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 104 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 104.
In one embodiment, the MAYV antigen comprises MAYV-El, a consensus thereof, a variant thereof, or a fragment thereof. In one embodiment, the MAYV-El antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106. In one embodiment, the MAYV antigen comprises a fragment of a MAYV-El. the In one embodiment, the fragment of MAYV-El can comprise a fragment of SEQ ID NO:106. In one embodiment, the fragment of a MAYV-El antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106. In one embodiment, the fragment of MAYV-El can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at least 340 amino acids, at least 350 amino acids, at least 360 amino acids, at least 370 amino acids, at least 380 amino acids, at least 390 amino acids, at least 400 amino acids, at least 410 amino acids, at least 420 amino acids, at least 430 amino acids or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 106 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 106.
In one embodiment, the MAYV antigen comprises MAYV-E2, a consensus thereof, a variant thereof, or a fragment thereof. In one embodiment, the MAYV-E2 antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108. In one embodiment, the MAYV antigen comprises a fragment of a MAYV-E2. the In one embodiment, the fragment of MAYV-E2 can comprise a fragment of SEQ ID NO: 108. In one embodiment, the fragment of a MAYV-E2 antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108. In one embodiment, the fragment of MAYV-E2 can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 108 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 108.
In one embodiment, the MAYV antigen comprises MAYV-E3, a consensus thereof, a variant thereof, or a fragment thereof. In one embodiment, the MAYV-E3 antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 110. In one embodiment, the MAYV antigen comprises a fragment of a MAYV-E3. the In one embodiment, the fragment of MAYV-E3 can comprise a fragment of SEQ ID NO:l 10. In one embodiment, the fragment of a MAYV-E3 antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 110. In one embodiment, the fragment of MAYV-E3 can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at least 340 amino acids, at least 350 amino acids, at least 360 amino acids, at least 370 amino acids, at least 380 amino acids, at least 390 amino acids, at least 400 amino acids, at least 410 amino acids, at least 420 amino acids or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 110 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 110.
In one embodiment, the MAYV antigen comprises MAYV-6K, a consensus thereof, a variant thereof, or a fragment thereof. In one embodiment, the MAYV-6K antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 112. In one embodiment, the MAYV antigen comprises a fragment of a MAYV-6K. the In one embodiment, the fragment of MAYV-6K can comprise a fragment of SEQ ID NO: 112. In one embodiment, the fragment of a MAYV-6K antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 112. In one embodiment, the fragment of MAYV-6K can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 112 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 112.
In one embodiment, the MAYV antigen comprises MAYV-E3 and MAYV-E2 (MAYV-E3+E2), a consensus thereof, a variant thereof, or a fragment thereof. In one embodiment, the MAYV-E3+E2 antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO:l 14. In one embodiment, the MAYV antigen comprises a fragment of a MAYV-E3+E2. In one embodiment, the fragment of MAYV-E3+E2 can comprise a fragment of SEQ ID NO: 114. In one embodiment, the fragment of a MAYV- E3+E2 antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114. In one embodiment, the fragment of MAYV-E3+E2 can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 110 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at least 340 amino acids, at least 350 amino acids, at least 360 amino acids, at least 370 amino acids, at least 380 amino acids, at least 390 amino acids, at least 400 amino acids, at least 410 amino acids, at least 420 amino acids, at least 430 amino acids, at least 440 amino acids, at least 450 amino acids, at least 460 amino acids, at least 470 amino acids, at least 480 amino acids or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 114 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 114.
In one embodiment, the MAYV antigen is a MAYV-envelope (ENV) antigen. In one embodiment, the MAYV -ENV antigen comprises MAYV-E3, MAYV-E2, MAYV-6K, and MAYV -El, a consensus thereof, a variant thereof, or a fragment thereof. In one embodiment, the MAYV -ENV antigen can comprise the amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116. In one embodiment, the MAYV antigen comprises a fragment of a MAYV -ENV. In one embodiment, the fragment of MAYV -ENV can comprise a fragment of SEQ ID NO: 1 16. In one embodiment, the fragment of a MAYV-ENV antigen can comprise a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116. In one embodiment, the fragment of MAYV-ENV can comprise at least 20 amino acids or more, at least 30 amino acids or more, at least 40 amino acids or more, at least 50 amino acids or more, at least 60 amino acids or more, at least 70 amino acids or more, at least 80 amino acids or more, at least 90 amino acids or more, at least 100 amino acids or more, at least 1 10 amino acids or more, at least 120 amino acids or more, at least 130 amino acids or more, at least 140 amino acids or more, at least 150 amino acids or more, at least 160 amino acids or more, at least 170 amino acids or more, at least 180 amino acids, at least 190 amino acids, at least 200 amino acids, at least 210 amino acids, at least 220 amino acids, at least 230 amino acids, at least 240 amino acids, at least 250 amino acids, at least 260 amino acids, at least 270 amino acids, at least 280 amino acids, at least 290 amino acids, at least 300 amino acids, at least 310 amino acids, at least 320 amino acids, at least 330 amino acids, at least 340 amino acids, at least 350 amino acids, at least 360 amino acids, at least 370 amino acids, at least 380 amino acids, at least 390 amino acids, at least 400 amino acids, at least 410 amino acids, at least 420 amino acids, at least 430 amino acids, at least 440 amino acids, at least 450 amino acids, at least 460 amino acids, at least 470 amino acids, at least 480 amino acids, at least 490 amino acids, at least 500 amino acids, at least 510 amino acids, at least 520 amino acids, at least 530 amino acids, at least 540 amino acids, at least 550 amino acids, at least 560 amino acids, at least 570 amino acids, at least 580 amino acids, at least 590 amino acids, at least 600 amino acids, at least 610 amino acids, at least 620 amino acids, at least 630 amino acids, at least 640 amino acids, at least 650 amino acids, at least 660 amino acids, at least 670 amino acids, at least 680 amino acids, at least 690 amino acids, at least 700 amino acids, at least 710 amino acids, at least 720 amino acids, at least 730 amino acids, at least 740 amino acids, at least 750 amino acids, at least 760 amino acids, at least 770 amino acids, at least 780 amino acids, at least 790 amino acids, at least 800 amino acids, at least 810 amino acids, at least 820 amino acids, at least 830 amino acids, at least 840 amino acids, at least 850 amino acids, at least 860 amino acids, at least 870 amino acids, at least 880 amino acids, at least 890 amino acids, at least 900 amino acids, at least 910 amino acids, at least 920 amino acids, at least 930 amino acids or more of a protein comprising the amino acid sequence set forth in SEQ ID NO: 1 16 or a protein comprising a sequence at least 80% identical to the amino acid sequence set forth in SEQ ID NO: 116.
In some embodiments, the MAYV antigen further comprises a protease sequence. For example, in one embodiment, MAYV-E3+E2 comprises a protease sequence between MAYV-E3 and MAYV-E2. In one embodiment, MAYV-ENV comprises a proteinase a protease sequence between two or more of MAYV-E3, MAYV-E2, MAYV-6K and MAYV- El . In one embodiment, the protease sequence is a native protease sequence. In one embodiment, the protease sequence is a heterologous protease sequence. In one embodiment, the protease sequence is a furin protease sequence. In one embodiment, the furin protease sequence comprises the amino acid sequence RGRKRRS (SEQ ID NO: 126).
4. Nucleic Acids and Coding Sequences Encoding Antigens
Provided herein are coding sequences of antigens capable of eliciting an immune response against one or more MAYV subtypes. Coding sequences encoding the proteins set forth herein may be generated using routine methods. Also described herein are isolated nucleic acids comprising nucleic acid sequences that encode MAYV antigens. The antigen may be a MAYV antigen comprising CA protein El, E2, E3, 6K, a consensus thereof, a variant thereof, a fragment thereof or a combination thereof. The MAYV antigen may contain at least one antigenic epitope that may be effective against particular MAYV immunogens against which an immune response can be induced. Nucleic acid sequences encoding a MAYV -El antigen, a MAYV-E2 antigen, a MAYV-E3 antigen, a MAYV-6K immunogen and a MAYV-CA antigen can be generated based upon the amino acid sequences disclosed. The nucleic acid sequences may optionally comprise coding sequences that encode a signal peptide such as for example an IgE or IgG signal peptide.
The nucleic acid sequence may encode a full-length MAYV -El antigen, a full-length MAYV-E2 antigen, a full-length MAYV-E3 antigen, a full-length MAYV-6K antigen or a full-length MAYV-CA antigen. The MAYV antigen may be a MAYV polyprotein. For example, the nucleic acid may encode a full length MAYV polyprotein. For example, in one embodiment, the nucleic acid sequence may encode MAYV-E3 and MAYV-E2 (MAYV- E3+E2). In one embodiment, the nucleic acid sequence may encode MAYV-envelope (ENV). On one embodiment, MAYV-ENV comprise MAYV-E3, MAYV-E2, MAYV-6K and MAYV -El. The nucleic acid sequences may comprise a sequence that encodes one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116, a variant thereof, a fragment thereof or any combination thereof. In one embodiment, the nucleic acid sequence comprises an RNA sequence encoding a full-length consensus MAYV immunogen sequence described herein. For example, nucleic acids may comprise an RNA sequence encoding one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, 116, a variant thereof, a fragment thereof or any combination thereof.
The nucleic acid sequence may encode a fragment of a MAYV antigen. Fragments of a full-length MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the amino acid sequences set forth herein. Fragments of a nucleic acid encoding a MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the nucleic acid sequences set forth herein.
The nucleic acid sequence may encode a protein homologous to a MAYV antigen. For example, the nucleic acid sequence may encode a protein homologous to MAYV-E1, a protein homologous to MAYV-E2, a protein homologous to MAYV-E3, a protein homologous to MAYV-6K or a protein homologous to MAYV-CA. The MAYV antigen may be homologous to a MAYV polyprotein. For example, the nucleic acid may encode a protein homologous to a MAYV polyprotein. For example, in one embodiment, the nucleic acid sequence may encode a protein homologous to MAYV-E3 and MAYV-E2 (MAYV-E3+E2). In one embodiment, the nucleic acid sequence may encode a protein homologous to MAYV- envelope (ENV). On one embodiment, MAYV-ENV comprises MAYV-E3, MAYV-E2, MAYV-6K and MAYV-E1. Nucleic acid sequence may comprise a sequence that encodes a protein homologous to one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, and 116.
The nucleic acid sequence may encode a protein homologous to a MAYV antigen. For example, the nucleic acid sequence may encode a protein homologous to MAYV-E1, a protein homologous to MAYV-E2, a protein homologous to MAYV-E3, a protein homologous to MAYV-6K or a protein homologous to MAYV-CA. The MAYV antigen may be homologous to a MAYV polyprotein. For example, the nucleic acid may encode a protein homologous to a MAYV polyprotein. For example, in one embodiment, the nucleic acid sequence may encode a protein homologous to MAYV-E3 and MAYV-E2 (MAYV-E3+E2). In one embodiment, the nucleic acid sequence may encode a protein homologous to MAYV- envelope (ENV). On one embodiment, MAYV-ENV comprises MAYV-E3, MAYV-E2, MAYV-6K and MAYV-E1. Nucleic acid sequence may comprise a sequence that encodes a protein homologous to one or more of SEQ ID NOs: 104, 106, 108, 110, 112, 114, and 116. Fragments of a protein homologous to a MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the amino acid sequences set forth herein. Fragments of a nucleic acid encoding a protein homologous to a MAYV antigen can comprise at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 95% of one or more of the nucleic acid sequences set forth herein.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-CA. In one embodiment, MAYV-CA can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 104. In some embodiments, MAYV-CA can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 105. In some embodiments, the MAYV-CA antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 105. In some embodiments, the MAYV-CA antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-CA. In one embodiment, the fragment of MAYV-CA can comprise a fragment of SEQ ID NO: 104. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 104. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 105 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 105. The fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 105 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 105.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-El. In one embodiment, MAYV-El can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 106. In some embodiments, MAYV-El can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 107. In some embodiments, the MAYV-El antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 107. In some embodiments, the MAYV-El antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-El. In one embodiment, the fragment of MAYV-El can comprise a fragment of SEQ ID NO: 106. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 106. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 107 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 107. The fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, at least 1275 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 107 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 107.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-E2. In one embodiment, MAYV-E2 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 108. In some embodiments, MAYV-E2 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 109. In some embodiments, the MAYV-E2 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 109. In some embodiments, the MAYV-E2 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-E2. In one embodiment, the fragment of MAYV-E2 can comprise a fragment of SEQ ID NO: 108. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 108. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 109 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 109. The fragment can comprise at least 10, at least 20, at least 30, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 110, at least 120, at least 130, at least 140, at least 150, at least 160, at least 170, at least 180, at least 190 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 109 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 109.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-E3. In one embodiment, MAYV-E3 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 110. In some embodiments, MAYV-E3 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 111. In some embodiments, the MAYV-E3 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 111. In some embodiments, the MAYV-E3 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: l 10.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-E3. In one embodiment, the fragment of MAYV-E3 can comprise a fragment of SEQ ID NO: 110. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 110. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 111 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 111. The fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 111 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: l l l.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-6K. In one embodiment, MAYV-6K can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 112. In some embodiments, MAYV-6K can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 113. In some embodiments, the MAYV-6K antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 113. In some embodiments, the MAYV-6K antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: l 12.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-6K. In one embodiment, the fragment of MAYV-6K can comprise a fragment of SEQ ID NO: 112. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 112. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 113 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 113. The fragment can comprise at least 10, at least 20, at least 30, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 110, at least 120, at least 130, at least 140, at least 150, at least 160, at least 170, at least 180, at least 190, at least 200 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 113 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 113.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-E2+E3. In one embodiment, MAYV-E2+E3 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 114. In some embodiments, MAYV-E2+E3 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115. In some embodiments, the MAYV-E2+E3 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115. In some embodiments, the MAYV-E2+E3 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-E2+E3. In one embodiment, the fragment of MAYV-E2+E3 can comprise a fragment of SEQ ID NO: 114. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 115 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 115. The fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, at least 1300, at least 1325, at least 1350, at least 1375, at least 1400, at least 1425, at least 1450 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 115 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 115.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-E2+E3. In one embodiment, MAYV-E2+E3 can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 114. In some embodiments, MAYV-E2+E3 can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115. In some embodiments, the MAYV-E2+E3 antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 115. In some embodiments, the MAYV-E2+E3 antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-E2+E3. In one embodiment, the fragment of MAYV-E2+E3 can comprise a fragment of SEQ ID NO: 114. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 114. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 1 15 or a fragment of a nucleic acid sequence at having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 1 15. The fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1 100, at least 1 125, at least 1150, at least 1175, at least 1200, at least 1225, at least 1250, at least 1300, at least 1325, at least 1350, at least 1375, at least 1400, at least 1425, at least 1450 or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 1 15 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 1 15.
In one embodiment, the nucleic acid encodes an antigen comprising MAYV-ENV. In one embodiment, MAYV-ENV can be encoded by a nucleic acid sequence encoding a protein having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino sequence set forth in the SEQ ID NO: 1 16. In some embodiments, MAYV-ENV can be encoded by a nucleic acid sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 117. In some embodiments, the MAYV-ENV antigen can be encoded by an RNA that is a transcript from a DNA sequence having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in the SEQ ID NO: 1 17. In some embodiments, the MAYV-ENV antigen can be encoded by an RNA that encodes an amino acid sequence having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116.
In one embodiment, the nucleic acid sequence encodes a fragment of MAYV-ENV. In one embodiment, the fragment of MAYV-ENV can comprise a fragment of SEQ ID NO: 116. In one embodiment, the nucleic acid encodes a fragment of a protein having at least about 80%, 81 %, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the amino acid sequence set forth in SEQ ID NO: 116. In one embodiment, the nucleic acid comprises a fragment of a nucleic acid sequence set forth in SEQ ID NO: 1 17 or a fragment of a nucleic acid sequence at having at least about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identity over an entire length of the nucleic acid sequence set forth in SEQ ID NO: 1 17. The fragment can comprise at least 50, at least 75, at least 100, at least 125, at least 150, at least 175, at least 200, at least 225, at least 250, at least 275, at least 300, at least 325, at least 350, at least 375, at least 400, at least 425, at least 450, at least 475, at least 500, at least 525, at least 550, at least 575, at least 600, at least 625, at least 650, at least 675, at least 700, at least 725, at least 750, at least 775, at least 800, at least 825, at least 850, at least 875, 900, at least 925, at least 950, at least 975, 1000, at least 1025, at least 1050, at least 1075, 1100, at least 1125, at least 1150, at least 1 175, at least 1200, at least 1225, at least 1250, at least 1300, at least 1325, at least 1350, at least 1375, at least 1400, at least 1425, at least 1450, at least 1500, at least 1525, at least 1550, at least 1575, at least 1600, at least 1625, at least 1650, at least 1675,at least 1700, at least 1725, at least 1750, at least 1775, at least 1800, at least 1825, at least 1850, at least 1875, at least 1900, at least 1925, at least 1950, at least 1975, at least 2000, at least 2025, at least 2050, at least 2075, at least 2100, at least 2125, at least 2150, at least 2175, at least 2200, at least 2225, at least 2250, at least 2275, at least 2300, at least 2325, at least 2350, at least 2375, at least 2400, at least 2425, at least 2450, at least 2475, at least 2500, at least 2525, at least 2550, at least 2575, at least 2600, at least 2625, at least 2650, at least 2675, at least 2700, at least 2725, at least 2750, at least 2775 at least 1475, or more nucleic acids of a nucleic acid sequence comprising the nucleic acid sequence set forth in SEQ ID NO: 1 17 or a nucleic acid sequence comprising a sequence at least 80% identical to the nucleic acid sequence set forth in SEQ ID NO: 1 17. 5. Vaccines and Immunological Compositions
Provided herein is a vaccine or immunologic composition capable of generating in a mammal an immune response against Mayaro virus. The vaccine may a nucleic acid molecule as discussed above. The vaccine may comprise a plurality of the nucleic acid molecules, or combinations thereof. The vaccine may be provided to induce a therapeutic or prophylactic immune response.
The vaccine can be a DNA vaccine. DNA vaccines are disclosed in US Patent Nos. 5,593,972, 5,739,118, 5,817,637, 5,830,876, 5,962,428, 5,981,505, 5,580,859, 5,703,055, and 5,676,594, which are incorporated herein fully by reference. The DNA vaccine can further comprise elements or reagents that inhibit it from integrating into the chromosome.
The vaccine can be an RNA of the one or more MAYV antigens. The RNA vaccine can be introduced into the cell.
The vaccine can be an attenuated live vaccine, a vaccine using recombinant vectors to deliver antigen, subunit vaccines, and glycoprotein vaccines, for example, but not limited, the vaccines described in U.S. Patent Nos. : 4,510,245; 4,797,368; 4,722,848; 4,790,987;
4,920,209; 5,017,487; 5,077,044; 5,110,587; 5,112,749; 5,174,993; 5,223,424; 5,225,336; 5,240,703; 5,242,829; 5,294,441 ; 5,294,548; 5,310,668; 5,387,744; 5,389,368; 5,424,065; 5,451,499; 5,453,3 64; 5,462,734; 5,470,734; 5,474,935; 5,482,713; 5,591,439; 5,643,579; 5,650,309; 5,698,202; 5,955,088; 6,034,298; 6,042,836; 6,156,319 and 6,589,529, which are each incorporated herein by reference.
The vaccine of the present invention can have features required of effective vaccines such as being safe so that the vaccine itself does not cause illness or death; being protective against illness; inducing neutralizing antibody; inducing protective T cell responses; and providing ease of administration, few side effects, biological stability, and low cost per dose.
The vaccine may further comprise a pharmaceutically acceptable excipient. The pharmaceutically acceptable excipient may be functional molecules as vehicles, adjuvants, carriers, or diluents. The pharmaceutically acceptable excipient may be a transfection facilitating agent, which may include surface active agents, such as immune-stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs, vesicles such as squalene and squalene, hyaluronic acid, lipids, liposomes, calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents.
The transfection facilitating agent is a polyanion, poly cation, including poly-L- glutamate (LGS), or lipid. The transfection facilitating agent is poly-L-glutamate, and more preferably, the poly-L-glutamate is present in the vaccine at a concentration less than 6 mg/ml. The transfection facilitating agent may also include surface active agents such as immune-stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs and vesicles such as squalene and squalene, and hyaluronic acid may also be used administered in conjunction with the genetic construct. In some embodiments, the DNA plasmid vaccines may also include a transfection facilitating agent such as lipids, liposomes, including lecithin liposomes or other liposomes known in the art, as a DNA-liposome mixture (see for example W09324640), calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents. Preferably, the transfection facilitating agent is a polyanion, poly cation, including poly-L-glutamate (LGS), or lipid. In one embodiment, the concentration of the transfection agent in the vaccine is less than 4 mg/ml, less than 2 mg/ml, less than 1 mg/ml, less than 0.750 mg/ml, less than 0.500 mg/ml, less than 0.250 mg/ml, less than 0.100 mg/ml, less than 0.050 mg/ml, or less than 0.010 mg/ml.
The pharmaceutically acceptable excipient may be one or more adjuvants. An adjuvant may be other genes that are expressed from the same or from an alternative plasmid or are delivered as proteins in combination with the plasmid above in the vaccine. The one or more adjuvants may be proteins and/or nucleic acid molecules that encode proteins selected from the group consisting of: CCL20, a-interferon (IFN- a), β-interferon (IFN-β), γ-interferon, platelet derived growth factor (PDGF), TNFa, ΤΝΡβ, GM-CSF, epidermal growth factor (EGF), cutaneous T cell-attracting chemokine (CTACK), epithelial thymus-expressed chemokine (TECK), mucosae-associated epithelial chemokine (MEC), IL-12, IL-15 including IL-15 having the signal sequence or coding sequence that encodes the signal sequence deleted and optionally including a different signal peptide such as that from IgE or coding sequence that encodes a difference signal peptide such as that from IgE, IL-28, MHC, CD80, CD86, IL-1, IL-2, IL-4, IL-5, IL-6, IL-10, IL-18, MCP-1, ΜΙΡ-Ια, ΜΙΡ-Ιβ, IL-8, L- selectin, P-selectin, E-selectin, CD34, GlyCAM-1, MadCAM-1, LFA-1, VLA-1, Mac-1, pl50.95, PECAM, ICAM-1, ICAM-2, ICAM-3, CD2, LFA-3, M-CSF, G-CSF, mutant forms of IL-18, CD40, CD40L, vascular growth factor, fibroblast growth factor, IL-7, nerve growth factor, vascular endothelial growth factor, Fas, TNF receptor, Fit, Apo-1, p55, WSL-1, DR3, TRAMP, Apo-3, AIR, LARD, NGRF, DR4, DR5, KILLER, TRAIL-R2, TRICK2, DR6, Caspase ICE, Fos, c-jun, Sp-1, Ap-1, Ap-2, p38, p65Rel, MyD88, IRAK, TRAF6, IkB, Inactive NIK, SAP K, SAP-1, INK, interferon response genes, NFkB, Bax, TRAIL, TRAILrec, TRAILrecDRC5, TRAIL-R3, TRAIL-R4, RANK, RANK LIGAND, Ox40, Ox40 LIGAND, NKG2D, MICA, MICB, NKG2A, NKG2B, NKG2C, NKG2E, NKG2F, TAP1, TAP2 and functional fragments thereof or a combination thereof.
In some embodiments, the adjuvant may be one or more proteins and/or nucleic acid molecules that encode proteins selected from the group consisting of: CCL-20, IL-12, IL-15, IL-28, CTACK, TECK, MEC or RANTES. Examples of IL-12 constructs and sequences are disclosed in PCT application no. PCT/US 1997/019502 and corresponding US Application Serial No. 08/956,865, and U.S. Provisional Application Serial No 61/569600 filed December 12, 2011, which are each incorporated herein by reference. Examples of IL-15 constructs and sequences are disclosed in PCT application no. PCT/US04/18962 and corresponding US Application Serial No. 10/560,650, and in PCT application no. PCT/US07/00886 and corresponding U.S. Application Serial No. 12/160,766, and in PCT application no.
PCT/US 10/048827, which are each incorporated herein by reference. Examples of IL-28 constructs and sequences are disclosed in PCT application no. PCT/US09/039648 and corresponding U.S. Application Serial No. 12/936,192, which are each incorporated herein by reference. Examples of RANTES and other constructs and sequences are disclosed in PCT application no. PCT/US 1999/004332 and corresponding U.S. Application Serial No. and 09/622452, which are each incorporated herein by reference. Other examples of RANTES constructs and sequences are disclosed in PCT application no. PCT/US 11/024098, which is incorporated herein by reference. Examples of RANTES and other constructs and sequences are disclosed in PCT application no. PCT/US 1999/004332 and corresponding U.S.
Application Serial No. 09/622452, which are each incorporated herein by reference. Other examples of RANTES constructs and sequences are disclosed in PCT application no.
PCT/US 11/024098, which is incorporated herein by reference. Examples of chemokines CTACK, TECK and MEC constructs and sequences are disclosed in PCT application no. PCT/US2005/042231 and corresponding U.S. Application Serial No. 11/719,646, which are each incorporated herein by reference. Examples of OX40 and other immunomodulators are disclosed in U.S. Application Serial No. 10/560,653, which is incorporated herein by reference. Examples of DR5 and other immunomodulators are disclosed in U.S. Application Serial No. 09/622452, which is incorporated herein by reference.
The vaccine may further comprise a genetic vaccine facilitator agent as described in U.S. Serial No. 021,579 filed April 1, 1994, which is fully incorporated by reference. The vaccine may comprise the consensus antigens and plasmids at quantities of from about 1 nanogram to 100 milligrams; about 1 microgram to about 10 milligrams; or preferably about 0.1 microgram to about 10 milligrams; or more preferably about 1 milligram to about 2 milligram. In some preferred embodiments, pharmaceutical compositions according to the present invention comprise about 5 nanogram to about 1000 micrograms of DNA. In some preferred embodiments, the pharmaceutical compositions contain about 10 nanograms to about 800 micrograms of DNA. In some preferred embodiments, the pharmaceutical compositions contain about 0.1 to about 500 micrograms of DNA. In some preferred embodiments, the pharmaceutical compositions contain about 1 to about 350 micrograms of DNA. In some preferred embodiments, the pharmaceutical compositions contain about 25 to about 250 micrograms, from about 100 to about 200 microgram, from about 1 nanogram to 100 milligrams; from about 1 microgram to about 10 milligrams; from about 0.1 microgram to about 10 milligrams; from about 1 milligram to about 2 milligram, from about 5 nanogram to about 1000 micrograms, from about 10 nanograms to about 800 micrograms, from about 0.1 to about 500 micrograms, from about 1 to about 350 micrograms, from about 25 to about 250 micrograms, from about 100 to about 200 microgram of the consensus antigen or plasmid thereof.
In some embodiments, pharmaceutical compositions according to the present invention comprise at least 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 100 nanograms of DNA of the vaccine. In some embodiments, the pharmaceutical compositions can comprise at least 1, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95,100, 105, 110, 115, 120, 125, 130, 135, 140, 145, 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, 200, 205, 210, 215, 220, 225, 230, 235, 240, 245, 250, 255, 260, 265, 270, 275, 280, 285, 290, 295, 300, 305, 310, 315, 320, 325, 330, 335, 340, 345, 350, 355, 360, 365, 370, 375, 380, 385, 390, 395, 400, 405, 410, 415, 420, 425, 430, 435, 440, 445, 450, 455, 460, 465, 470, 475, 480, 485, 490, 495, 500, 605, 610, 615, 620, 625, 630, 635, 640, 645, 650, 655, 660, 665, 670, 675, 680, 685, 690, 695, 700, 705, 710, 715, 720, 725, 730, 735, 740, 745, 750, 755, 760, 765, 770, 775, 780, 785, 790, 795, 800, 805, 810, 815, 820, 825, 830, 835, 840, 845, 850, 855, 860, 865, 870, 875, 880, 885, 890, 895. 900, 905, 910, 915, 920, 925, 930, 935, 940, 945, 950, 955, 960, 965, 970, 975, 980, 985, 990, 995 or 1000 micrograms of DNA of the vaccine. In some embodiments, the pharmaceutical composition can comprise at least 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8, 8.5, 9, 9.5 or 10 mg or more of DNA of the vaccine. In other embodiments, the pharmaceutical composition can comprise up to and including 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 100 nanograms of DNA of the vaccine. In some embodiments, the pharmaceutical composition can comprise up to and including 1 , 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 105, 110, 115, 120, 125, 130, 135, 140, 145, 150, 155, 160, 165, 170, 175, 180, 185, 190, 195, 200, 205, 210, 215, 220, 225, 230, 235, 240, 245, 250, 255, 260, 265, 270, 275, 280, 285, 290, 295, 300, 305, 310, 315, 320, 325, 330, 335, 340, 345, 350, 355, 360, 365, 370, 375, 380, 385, 390, 395, 400, 405, 410, 415, 420, 425, 430, 435, 440, 445, 450, 455, 460, 465, 470, 475, 480, 485, 490, 495, 500, 605, 610, 615, 620, 625, 630, 635, 640, 645, 650, 655, 660, 665, 670, 675, 680, 685, 690, 695, 700, 705, 710, 715, 720, 725, 730, 735, 740, 745, 750, 755, 760, 765, 770, 775, 780, 785, 790, 795, 800, 805, 810, 815, 820, 825, 830, 835, 840, 845, 850, 855, 860, 865, 870, 875, 880, 885, 890, 895. 900, 905, 910, 915, 920, 925, 930, 935, 940, 945, 950, 955, 960, 965, 970, 975, 980, 985, 990, 995, or 1000 micrograms of DNA of the vaccine. In some embodiments, the pharmaceutical composition can comprise up to and including 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8, 8.5, 9, 9.5 or 10 mg of DNA of the vaccine.
The vaccine may be formulated according to the mode of administration to be used. An injectable vaccine pharmaceutical composition may be sterile, pyrogen free and particulate free. An isotonic formulation or solution may be used. Additives for isotonicity may include sodium chloride, dextrose, mannitol, sorbitol, and lactose. The vaccine may comprise a vasoconstriction agent. The isotonic solutions may include phosphate buffered saline.
Vaccine may further comprise stabilizers including gelatin and albumin. The stabilizing may allow the formulation to be stable at room or ambient temperature for extended periods of time such as LGS or poly cations or polyanions to the vaccine formulation.
The vaccine may be stable for is stable at room temperature (25°C) for more than 1 week, in some embodiments for more than 2 weeks, in some embodiments for more than 3 weeks, in some embodiments for more than 4 weeks, in some embodiments for more than 5 weeks, and in some embodiments for more than 6 weeks. In some embodiments, the vaccine is stable for more than one month, more than 2 months, more than 3 months, more than 4 months, more than 5 months, more than 6 months, more than 7 months, more than 8 months, more than 9 months, more than 10 months, more than 11 months, or more than 12 months. In some embodiments, the vaccine is stable for more than 1 year, more than 2 years, more than years, or more than 5 years. In one embodiment, the vaccine is stable under refrigeration (2- 8°C). Accordingly, in one embodiment, the vaccine does not require frozen cold-chain. A vaccine is stable if it retains its biological activity for a sufficient period to allow its intended use (e.g., to generate an immune response in a subject). For example, for vaccines that are to be stored, shipped, etc., it may be desired that the vaccines remain stable for months to years.
The immunogenic composition can induce an immune response in the subject administered the composition. The induced immune response can be specific for a native antigen. The induced immune response can be reactive with a native antigen related to the optimized consensus-encoded antigen. In various embodiments, related antigens include antigens having amino acid sequences having at least 90%, at least 91 %, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% homology to the amino acid sequence of the optimized consensus-encoded antigen. In various embodiments, related antigens include antigens encoded by nucleotide sequences having at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% homology to the optimized consensus nucleotide sequences disclosed herein.
The immunogenic composition can induce a humoral immune response in the subject administered the immunogenic composition. The induced humoral immune response can be specific for a native antigen. The induced humoral immune response can be reactive with the native antigen related to the optimized consensus-encoded antigen. The humoral immune response can be induced in the subject administered the immunogenic composition by about 1.5-fold to about 16-fold, about 2-fold to about 12-fold, or about 3-fold to about 10-fold. The humoral immune response can be induced in the subject administered the immunogenic composition by at least about 1.5-fold, at least about 2.0-fold, at least about 2.5-fold, at least about 3.0-fold, at least about 3.5-fold, at least about 4.0-fold, at least about 4.5-fold, at least about 5.0-fold, at least about 5.5-fold, at least about 6.0-fold, at least about 6.5-fold, at least about 7.0-fold, at least about 7.5-fold, at least about 8.0-fold, at least about 8.5-fold, at least about 9.0-fold, at least about 9.5-fold, at least about 10.0-fold, at least about 10.5-fold, at least about 11.0-fold, at least about 1 1.5-fold, at least about 12.0-fold, at least about 12.5- fold, at least about 13.0-fold, at least about 13.5 -fold, at least about 14.0-fold, at least about 14.5-fold, at least about 15.0-fold, at least about 15.5-fold, or at least about 16.0- fold as compared to a subject not administered the immunogenic composition or a subj ect administered a non-optimized MAYV antigen. The humoral immune response induced by the immunogenic composition can include an increased level of neutralizing antibodies associated with the subject administered the immunogenic composition as compared to a subject not administered the immunogenic composition. The neutralizing antibodies can be specific for a native antigen related to the optimized consensus-encoded antigen. The neutralizing antibodies can be reactive with the native antigen genetically related to the optimized consensus antigen. The neutralizing antibodies can provide protection against and/or treatment of tumor growth, metastasis or tumor associated pathologies in the subject administered the immunogenic composition.
The humoral immune response induced by the immunogenic composition can include an increased level of IgG antibodies associated with the subject administered the
immunogenic composition as compared to a subject not administered the immunogenic composition. These IgG antibodies can be specific for the native antigen genetically related to the optimized consensus antigen. These IgG antibodies can be reactive with the native antigen genetically related to the optimized consensus antigen. The level of IgG antibody associated with the subject administered the immunogenic composition can be increased by about 1.5-fold to about 16-fold, about 2-fold to about 12-fold, or about 3-fold to about 10- fold as compared to the subject not administered the immunogenic composition. The level of IgG antibody associated with the subject administered the immunogenic composition can be increased by at least about 1.5-fold, at least about 2.0-fold, at least about 2.5-fold, at least about 3.0-fold, at least about 3.5-fold, at least about 4.0-fold, at least about 4.5-fold, at least about 5.0-fold, at least about 5.5-fold, at least about 6.0-fold, at least about 6.5-fold, at least about 7.0-fold, at least about 7.5-fold, at least about 8.0-fold, at least about 8.5-fold, at least about 9.0-fold, at least about 9.5-fold, at least about 10.0-fold, at least about 10.5-fold, at least about 11.0-fold, at least about 11.5-fold, at least about 12.0-fold, at least about 12.5- fold, at least about 13.0-fold, at least about 13.5 -fold, at least about 14.0-fold, at least about 14.5-fold, at least about 15.0-fold, at least about 15.5-fold, or at least about 16.0-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
The immunogenic composition can induce a cellular immune response in the subject administered the immunogenic composition. The induced cellular immune response can be specific for a native antigen related to the optimized consensus-encoded antigen. The induced cellular immune response can be reactive to the native antigen related to the optimized consensus-encoded antigen. The induced cellular immune response can include eliciting a CD8+ T cell response. The elicited CD8+ T cell response can be reactive with the native antigen genetically related to the optimized consensus antigen. The elicited CD8+ T cell response can be polyfunctional. The induced cellular immune response can include eliciting a CD8+ T cell response, in which the CD8+ T cells produce interferon-gamma (IFN-γ), tumor necrosis factor alpha (TNF-a), interleukin-2 (IL-2), or a combination of IFN-γ and TNF-a.
The induced cellular immune response can include an increased CD8+ T cell response associated with the subject administered the immunogenic composition as compared to the subject not administered the immunogenic composition. The CD8+ T cell response associated with the subject administered the immunogenic composition can be increased by about 2-fold to about 30-fold, about 3 -fold to about 25 -fold, or about 4-fold to about 20-fold as compared to the subject not administered the immunogenic composition. The CD8+ T cell response associated with the subject administered the immunogenic composition can be increased by at least about 1.5-fold, at least about 2.0-fold, at least about 3.0-fold, at least about 4.0-fold, at least about 5.0-fold, at least about 6.0-fold, at least about 6.5-fold, at least about 7.0-fold, at least about 7.5-fold, at least about 8.0-fold, at least about 8.5-fold, at least about 9.0-fold, at least about 9.5-fold, at least about 10.0-fold, at least about 10.5-fold, at least about 11.0-fold, at least about 11.5-fold, at least about 12.0-fold, at least about 12.5-fold, at least about 13.0- fold, at least about 13.5-fold, at least about 14.0-fold, at least about 14.5-fold, at least about 15.0-fold, at least about 16.0-fold, at least about 17.0-fold, at least about 18.0-fold, at least about 19.0-fold, at least about 20.0-fold, at least about 21.0-fold, at least about 22.0-fold, at least about 23.0-fold, at least about 24.0-fold, at least about 25.0-fold, at least about 26.0- fold, at least about 27.0-fold, at least about 28.0-fold, at least about 29.0-fold, or at least about 30.0-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
The induced cellular immune response can include an increased frequency of
CD107a/IFNY/T-bet triple-positive CD8 T cells that are reactive against the native antigen. The frequency of CD107a/IFNY/T-bet triple-positive CD8 T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, 14-fold, 15- fold, 16-fold, 17-fold, 18-fold, 19-fold, or 20-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
The induced cellular immune response can include an increased frequency of
CD107a/IFNY double-positive CD8 T cells that are reactive against the native antigen. The frequency of CD107a/IFNY double-positive CD8 T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, or 14-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
The cellular immune response induced by the immunogenic composition can include eliciting a CD4+ T cell response. The elicited CD4+ T cell response can be reactive with the native antigen genetically related to the optimized consensus antigen. The elicited CD4+ T cell response can be polyfunctional. The induced cellular immune response can include eliciting a CD4+ T cell response, in which the CD4+ T cells produce IFN-γ, TNF-a, IL-2, or a combination of IFN-γ and TNF-a.
The induced cellular immune response can include an increased frequency of CD4+ T cells that produce IFN-γ. The frequency of CD4+IFN-y+ T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, 14-fold, 15- fold, 16-fold, 17-fold, 18-fold, 19-fold, or 20-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
The induced cellular immune response can include an increased frequency of CD4+ T cells that produce TNF-a. The frequency of CD4+TNF-a+ T cells associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 3 -fold, 4-fold, 5-fold, 6-fold, 7-fold, 8-fold, 9-fold, 10-fold, 11-fold, 12-fold, 13-fold, 14-fold, 15- fold, 16-fold, 17-fold, 18-fold, 19-fold, 20-fold, 21-fold, or 22-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
The induced cellular immune response can include an increased frequency of CD4+ T cells that produce both IFN-γ and TNF-a. The frequency of CD4+IFN-Y+TNF-a+ associated with the subject administered the immunogenic composition can be increased by at least about 2-fold, 2.5-fold, 3.0-fold, 3.5-fold, 4.0-fold, 4.5-fold, 5.0-fold, 5.5-fold, 6.0-fold, 6.5- fold, 7.0-fold, 7.5-fold, 8.0-fold, 8.5-fold, 9.0-fold, 9.5-fold, 10.0-fold, 10.5-fold, 11.0-fold, 11.5-fold, 12.0-fold, 12.5-fold, 13.0-fold, 13.5-fold, 14.0-fold, 14.5-fold, 15.0-fold, 15.5-fold, 16.0-fold, 16.5-fold, 17.0-fold, 17.5-fold, 18.0-fold, 18.5-fold, 19.0-fold, 19.5-fold, 20.0-fold, 21 -fold, 22-fold, 23-fold 24-fold, 25-fold, 26-fold, 27-fold, 28-fold, 29-fold, 30-fold, 31 -fold, 32-fold, 33-fold, 34-fold, or 35-fold as compared to a subject not administered the immunogenic composition or a subject administered a non-optimized MAYV antigen.
The immunogenic composition of the present invention can have features required of effective vaccines such as being safe so the vaccine itself does not cause illness or death; is protective against illness resulting from exposure to live pathogens such as viruses or bacteria; induces neutralizing antibody to prevent invention of cells; induces protective T cells against intracellular pathogens; and provides ease of administration, few side effects, biological stability, and low cost per dose.
The immunogenic composition can further induce an immune response when administered to different tissues such as the muscle or skin. The immunogenic composition can further induce an immune response when administered via electroporation, or injection, or subcutaneously, or intramuscularly.
6. DNA Monoclonal Antibodies
The present invention relates to a composition comprising a recombinant nucleic acid sequence encoding an antibody, a fragment thereof, a variant thereof, or a combination thereof. The composition, when administered to a subject in need thereof, can result in the generation of a synthetic antibody in the subject. The synthetic antibody can bind a target molecule (i.e., an antigen) present in the subject. Such binding can neutralize the antigen, block recognition of the antigen by another molecule, for example, a protein or nucleic acid, and elicit or induce an immune response to the antigen.
In one embodiment, the composition comprises a nucleotide sequence encoding a synthetic antibody. In one embodiment, the composition comprises a nucleic acid molecule comprising a first nucleotide sequence encoding a first synthetic antibody and a second nucleotide sequence encoding a second synthetic antibody. In one embodiment, the nucleic acid molecule comprises a nucleotide sequence encoding a cleavage domain.
In one embodiment, the nucleic acid molecule comprises a nucleotide sequence encoding an anti-Mayaro virus (anti-MAYV) antibody.
In one embodiment, the nucleotide sequence encoding an anti-MAYV antibody comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3, or a fragment of an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3. In one embodiment, the nucleotide sequence encoding an anti-MAYV antibody comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence as set forth in SEQ ID NO:l or 3 or a fragment of an amino acid sequence as set forth in SEQ ID NO: 1 or 3.
In one embodiment, the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3 or a fragment of an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3. In one embodiment, the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence as set forth in SEQ ID NO: 1 or 3 or a fragment of an amino acid sequence as set forth in SEQ ID NO: 1 or 3.
In one embodiment, the nucleotide sequence encoding an anti- MAYV antibody comprises one or more codon optimized nucleic acid sequences at least 90% homologous to SEQ ID NO: 2 or 4 or a fragment of a nucleic acid sequence at least 90% homologous to SEQ ID NO: 2 or 4. In one embodiment, the nucleotide sequence encoding an anti- MAYV antibody comprises one or more codon optimized nucleic acid sequences as set forth in SEQ ID NO: 2 or 4 or a fragment of a nucleic acid sequence as set forth in SEQ ID NO: 2 or 4.
In one embodiment, the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences at least 90%) homologous to SEQ ID NO: 2 or 4 or a fragment of a DNA sequence at least 90% homologous to SEQ ID NO: 2 or 4 .In one embodiment, the nucleotide sequence encoding an anti- MAYV antibody comprises one or more RNA sequence transcribed from one or more DNA sequences as set forth in SEQ ID NO: 2 or 4 or a fragment of a DNA sequence as set forth in SEQ ID NO:2 or 4.
In one embodiment, the composition comprises a nucleotide sequence encoding a synthetic MAYV heavy chain. In one embodiment, the composition comprises a nucleotide sequence encoding a synthetic MAYV light chain. In one embodiment, the composition comprises a nucleotide sequence encoding a synthetic MAYV antibody. In one embodiment, the sequence encoding a synthetic MAYV antibody comprises a first sequence encoding a synthetic MAYV heavy chain and a second sequence encoding a synthetic MAYV light chain.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16. In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs:5-16 or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs:5-16.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64. In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs: 29-64.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs:5-16. In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs:5-16, or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs: 5- 16.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64. In one embodiment, the nucleotide sequence encoding a synthetic MAYV heavy chain one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs: 29-64.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28. In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs: 17-28 or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs: 17-28.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:65-100. In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more codon optimized nucleic acid sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs:65-100.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28, or a fragment of an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17- 28. In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding an amino acid sequence as set forth in one of SEQ ID NOs: 17-28, or a fragment of an amino acid sequence as set forth in one of SEQ ID NOs: 17-28.
In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain comprises one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:65-100. In one embodiment, the nucleotide sequence encoding a synthetic MAYV light chain one or more RNA sequence transcribed from one or more DNA sequences encoding one or more CDRs each individually comprising an amino acid sequence as set forth in one of SEQ ID NOs: 65-100.
The composition of the invention can treat, prevent and/or protect against any disease, disorder, or condition associated with Mayaro virus infection. In certain embodiments, the composition can treat, prevent, and or/protect against viral infection. In certain embodiments, the composition can treat, prevent, and or/protect against condition associated with Mayaro virus infection.
The composition can result in the generation of the synthetic antibody in the subject within at least about 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, 6 hours, 7 hours, 8 hours, 9 hours, 10 hours, 11 hours, 12 hours, 13 hours, 14 hours, 15 hours, 20 hours, 25 hours, 30 hours, 35 hours, 40 hours, 45 hours, 50 hours, or 60 hours of administration of the composition to the subject. The composition can result in generation of the synthetic antibody in the subject within at least about 1 day, 2 days, 3 days, 4 days, 5 days, 6 days, 7 days, 8 days, 9 days, or 10 days of administration of the composition to the subject. The composition can result in generation of the synthetic antibody in the subject within about 1 hour to about 6 days, about 1 hour to about 5 days, about 1 hour to about 4 days, about 1 hour to about 3 days, about 1 hour to about 2 days, about 1 hour to about 1 day, about 1 hour to about 72 hours, about 1 hour to about 60 hours, about 1 hour to about 48 hours, about 1 hour to about 36 hours, about 1 hour to about 24 hours, about 1 hour to about 12 hours, or about 1 hour to about 6 hours of administration of the composition to the subject.
The composition, when administered to the subject in need thereof, can result in the generation of the synthetic antibody in the subject more quickly than the generation of an endogenous antibody in a subject who is administered an antigen to induce a humoral immune response. The composition can result in the generation of the synthetic antibody at least about 1 day, 2 days, 3 days, 4 days, 5 days, 6 days, 7 days, 8 days, 9 days, or 10 days before the generation of the endogenous antibody in the subject who was administered an antigen to induce a humoral immune response.
The composition of the present invention can have features required of effective compositions such as being safe so that the composition does not cause illness or death; being protective against illness; and providing ease of administration, few side effects, biological stability and low cost per dose.
7. Recombinant Nucleic Acid Sequence
As described above, the composition can comprise a recombinant nucleic acid sequence. The recombinant nucleic acid sequence can encode an anti-MAYV synthetic antibody, a fragment thereof, a variant thereof, or a combination thereof. The antibody is described in more detail below. The recombinant nucleic acid sequence can encode a MAYV antigen, a fragment thereof, a variant thereof, or a combination thereof.
The recombinant nucleic acid sequence can be a heterologous nucleic acid sequence. The recombinant nucleic acid sequence can include one or more heterologous nucleic acid sequences.
The recombinant nucleic acid sequence can be an optimized nucleic acid sequence. Such optimization can increase or alter the immunogenicity of the antibody. Optimization can also improve transcription and/or translation. Optimization can include one or more of the following: low GC content leader sequence to increase transcription; mRNA stability and codon optimization; addition of a kozak sequence (e.g., GCC ACC) for increased translation; addition of an immunoglobulin (Ig) leader sequence encoding a signal peptide; addition of an internal IRES sequence and eliminating to the extent possible cis-acting sequence motifs (i.e., internal TATA boxes).
Recombinant Nucleic Acid Sequence Construct
The recombinant nucleic acid sequence can include one or more recombinant nucleic acid sequence constructs. The recombinant nucleic acid sequence construct can include one or more components, which are described in more detail below.
The recombinant nucleic acid sequence construct can include a heterologous nucleic acid sequence that encodes a heavy chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof. The recombinant nucleic acid sequence construct can include a heterologous nucleic acid sequence that encodes a light chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof. The recombinant nucleic acid sequence construct can also include a heterologous nucleic acid sequence that encodes a protease or peptidase cleavage site. The recombinant nucleic acid sequence construct can also include a heterologous nucleic acid sequence that encodes an internal ribosome entry site (IRES). An IRES may be either a viral IRES or a eukaryotic IRES. The recombinant nucleic acid sequence construct can include one or more leader sequences, in which each leader sequence encodes a signal peptide. The recombinant nucleic acid sequence construct can include one or more promoters, one or more introns, one or more transcription termination regions, one or more initiation codons, one or more termination or stop codons, and/or one or more polyadenylation signals. The recombinant nucleic acid sequence construct can also include one or more linker or tag sequences. The tag sequence can encode a hemagglutinin (HA) tag.
(1) Heavy Chain Polypeptide
The recombinant nucleic acid sequence construct can include the heterologous nucleic acid encoding the heavy chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof. The heavy chain polypeptide can include a variable heavy chain (VH) region and/or at least one constant heavy chain (CH) region. The at least one constant heavy chain region can include a constant heavy chain region 1 (CHI), a constant heavy chain region 2 (CH2), and a constant heavy chain region 3 (CH3), and/or a hinge region. In some embodiments, the heavy chain polypeptide can include a VH region and a CHI region. In other embodiments, the heavy chain polypeptide can include a VH region, a CHI region, a hinge region, a CH2 region, and a CH3 region.
The heavy chain polypeptide can include a complementarity determining region ("CDR") set. The CDR set can contain three hypervariable regions of the VH region.
Proceeding from N-terminus of the heavy chain polypeptide, these CDRs are denoted "CDRl," "CDR2," and "CDR3," respectively. CDRl, CDR2, and CDR3 of the heavy chain polypeptide can contribute to binding or recognition of the antigen.
In one embodiment, the amino acid sequence of CDRl, CDR2, and CDR3 of the heavy chain polypeptide each independently comprise an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64. In one embodiment, the amino acid sequence of CDRl, CDR2, and CDR3 of the heavy chain polypeptide each independently comprise a comprises an amino acid sequence set forth in one of SEQ ID NO:29-64.
(2) Light Chain Polypeptide
The recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the light chain polypeptide, a fragment thereof, a variant thereof, or a combination thereof. The light chain polypeptide can include a variable light chain (VL) region and/or a constant light chain (CL) region.
The light chain polypeptide can include a complementarity determining region ("CDR") set. The CDR set can contain three hypervariable regions of the VL region.
Proceeding from N-terminus of the light chain polypeptide, these CDRs are denoted "CDRl," "CDR2," and "CDR3," respectively. CDRl, CDR2, and CDR3 of the light chain polypeptide can contribute to binding or recognition of the antigen.
In one embodiment, the amino acid sequence of CDRl, CDR2, and CDR3 of the light chain polypeptide each independently comprise an amino acid sequence at least 90% homologous to one of SEQ ID NO:65-100. In one embodiment, the amino acid sequence of CDRl, CDR2, and CDR3 of the light chain polypeptide each independently comprise a comprises an amino acid sequence set forth in one of SEQ ID NO: 65-100.
(3) Protease Cleavage Site
The recombinant nucleic acid sequence construct can include heterologous nucleic acid sequence encoding a protease cleavage site. The protease cleavage site can be recognized by a protease or peptidase. The protease can be an endopeptidase or endoprotease, for example, but not limited to, furin, elastase, HtrA, calpain, trypsin, chymotrypsin, trypsin, and pepsin. The protease can be furin. In other embodiments, the protease can be a serine protease, a threonine protease, cysteine protease, aspartate protease, metalloprotease, glutamic acid protease, or any protease that cleaves an internal peptide bond (i.e., does not cleave the N-terminal or C-terminal peptide bond).
The protease cleavage site can include one or more amino acid sequences that promote or increase the efficiency of cleavage. The one or more amino acid sequences can promote or increase the efficiency of forming or generating discrete polypeptides. The one or more amino acids sequences can include a 2A peptide sequence.
(4) Linker Sequence
The recombinant nucleic acid sequence construct can include one or more linker sequences. The linker sequence can spatially separate or link the one or more components described herein. In other embodiments, the linker sequence can encode an amino acid sequence that spatially separates or links two or more polypeptides.
(5) Promoter
The recombinant nucleic acid sequence construct can include one or more promoters. The one or more promoters may be any promoter that is capable of driving gene expression and regulating gene expression. Such a promoter is a cis-acting sequence element required for transcription via a DNA dependent RNA polymerase. Selection of the promoter used to direct gene expression depends on the particular application. The promoter may be positioned about the same distance from the transcription start in the recombinant nucleic acid sequence construct as it is from the transcription start site in its natural setting. However, variation in this distance may be accommodated without loss of promoter function.
The promoter may be operably linked to the heterologous nucleic acid sequence encoding the heavy chain polypeptide and/or light chain polypeptide. The promoter may be a promoter shown effective for expression in eukaryotic cells. The promoter operably linked to the coding sequence may be a CMV promoter, a promoter from simian virus 40 (SV40), such as SV40 early promoter and SV40 later promoter, a mouse mammary tumor virus (MMTV) promoter, a human immunodeficiency virus (HIV) promoter such as the bovine
immunodeficiency virus (BIV) long terminal repeat (LTR) promoter, a Moloney virus promoter, an avian leukosis virus (ALV) promoter, a cytomegalovirus (CMV) promoter such as the CMV immediate early promoter, Epstein Barr virus (EBV) promoter, or a Rous sarcoma virus (RSV) promoter. The promoter may also be a promoter from a human gene such as human actin, human myosin, human hemoglobin, human muscle creatine, human polyhedrin, or human metalothionein.
The promoter can be a constitutive promoter or an inducible promoter, which initiates transcription only when the host cell is exposed to some particular external stimulus. In the case of a multicellular organism, the promoter can also be specific to a particular tissue or organ or stage of development. The promoter may also be a tissue specific promoter, such as a muscle or skin specific promoter, natural or synthetic. Examples of such promoters are described in US patent application publication no. US20040175727, the contents of which are incorporated herein in its entirety.
The promoter can be associated with an enhancer. The enhancer can be located upstream of the coding sequence. The enhancer may be human actin, human myosin, human hemoglobin, human muscle creatine or a viral enhancer such as one from CMV, FMDV, RSV or EBV. Polynucleotide function enhances are described in U.S. Patent Nos. 5,593,972, 5,962,428, and W094/016737, the contents of each are fully incorporated by reference.
(6) Intron
The recombinant nucleic acid sequence construct can include one or more introns. Each intron can include functional splice donor and acceptor sites. The intron can include an enhancer of splicing. The intron can include one or more signals required for efficient splicing.
(7) Transcription Termination Region
The recombinant nucleic acid sequence construct can include one or more transcription termination regions. The transcription termination region can be downstream of the coding sequence to provide for efficient termination. The transcription termination region can be obtained from the same gene as the promoter described above or can be obtained from one or more different genes.
(8) Initiation Codon
The recombinant nucleic acid sequence construct can include one or more initiation codons. The initiation codon can be located upstream of the coding sequence. The initiation codon can be in frame with the coding sequence. The initiation codon can be associated with one or more signals required for efficient translation initiation, for example, but not limited to, a ribosome binding site.
(9) Termination Codon
The recombinant nucleic acid sequence construct can include one or more termination or stop codons. The termination codon can be downstream of the coding sequence. The termination codon can be in frame with the coding sequence. The termination codon can be associated with one or more signals required for efficient translation termination.
(10) Polyadenylation Signal
The recombinant nucleic acid sequence construct can include one or more polyadenylation signals. The polyadenylation signal can include one or more signals required for efficient polyadenylation of the transcript. The polyadenylation signal can be positioned downstream of the coding sequence. The polyadenylation signal may be a SV40
polyadenylation signal, LTR polyadenylation signal, bovine growth hormone (bGH) polyadenylation signal, human growth hormone (hGH) polyadenylation signal, or human β- globin polyadenylation signal. The SV40 polyadenylation signal may be a polyadenylation signal from a pCEP4 plasmid (Invitrogen, San Diego, CA).
(11) Leader Sequence
The recombinant nucleic acid sequence construct can include one or more leader sequences. The leader sequence can encode a signal peptide. The signal peptide can be an immunoglobulin (Ig) signal peptide, for example, but not limited to, an IgG signal peptide and a IgE signal peptide.
Arrangement of the DMAb Recombinant Nucleic Acid Sequence Construct
As described above, the recombinant nucleic acid sequence encoding a synthetic antibody can include one or more recombinant nucleic acid sequence constructs, in which each recombinant nucleic acid sequence construct can include one or more components. The one or more components are described in detail above. The one or more components, when included in the recombinant nucleic acid sequence construct, can be arranged in any order relative to one another. In some embodiments, the one or more components can be arranged in the recombinant nucleic acid sequence construct as described below. (12) Arrangement 1
In one arrangement, a first recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the heavy chain polypeptide and a second recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the light chain polypeptide. For example, in one embodiment, the first recombinant nucleic acid sequence encodes a heavy chain polypeptide having an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16. In one embodiment, the second recombinant nucleic acid sequence encodes a light chain polypeptide having an amino acid sequence at least 95% homologous to one of SEQ ID NOs: 17-28.
The first recombinant nucleic acid sequence construct can be placed in a vector. The second recombinant nucleic acid sequence construct can be placed in a second or separate vector. Placement of the recombinant nucleic acid sequence construct into the vector is described in more detail below.
The first recombinant nucleic acid sequence construct can also include the promoter, intron, transcription termination region, initiation codon, termination codon, and/or polyadenylation signal. The first recombinant nucleic acid sequence construct can further include the leader sequence, in which the leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the heavy chain polypeptide. Accordingly, the signal peptide encoded by the leader sequence can be linked by a peptide bond to the heavy chain polypeptide.
The second recombinant nucleic acid sequence construct can also include the promoter, initiation codon, termination codon, and polyadenylation signal. The second recombinant nucleic acid sequence construct can further include the leader sequence, in which the leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the light chain polypeptide. Accordingly, the signal peptide encoded by the leader sequence can be linked by a peptide bond to the light chain polypeptide.
Accordingly, one example of arrangement 1 can include the first vector (and thus first recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH and CHI, and the second vector (and thus second recombinant nucleic acid sequence construct) encoding the light chain polypeptide that includes VL and CL. A second example of arrangement 1 can include the first vector (and thus first recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH, CHI, hinge region, CH2, and CH3, and the second vector (and thus second recombinant nucleic acid sequence construct) encoding the light chain polypeptide that includes VL and CL. (13) Arrangement 2
In a second arrangement, the recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide. The heterologous nucleic acid sequence encoding the heavy chain polypeptide can be positioned upstream (or 5') of the heterologous nucleic acid sequence encoding the light chain polypeptide.
Alternatively, the heterologous nucleic acid sequence encoding the light chain polypeptide can be positioned upstream (or 5') of the heterologous nucleic acid sequence encoding the heavy chain polypeptide.
The recombinant nucleic acid sequence construct can be placed in the vector as described in more detail below.
The recombinant nucleic acid sequence construct can include the heterologous nucleic acid sequence encoding the protease cleavage site and/or the linker sequence. If included in the recombinant nucleic acid sequence construct, the heterologous nucleic acid sequence encoding the protease cleavage site can be positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide. Accordingly, the protease cleavage site allows for separation of the heavy chain polypeptide and the light chain polypeptide into distinct polypeptides upon expression. In other embodiments, if the linker sequence is included in the recombinant nucleic acid sequence construct, then the linker sequence can be positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
The recombinant nucleic acid sequence construct can also include the promoter, intron, transcription termination region, initiation codon, termination codon, and/or polyadenylation signal. The recombinant nucleic acid sequence construct can include one or more promoters. The recombinant nucleic acid sequence construct can include two promoters such that one promoter can be associated with the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the second promoter can be associated with the heterologous nucleic acid sequence encoding the light chain polypeptide. In still other embodiments, the recombinant nucleic acid sequence construct can include one promoter that is associated with the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide. The recombinant nucleic acid sequence construct can further include two leader sequences, in which a first leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the heavy chain polypeptide and a second leader sequence is located upstream (or 5') of the heterologous nucleic acid sequence encoding the light chain polypeptide. Accordingly, a first signal peptide encoded by the first leader sequence can be linked by a peptide bond to the heavy chain polypeptide and a second signal peptide encoded by the second leader sequence can be linked by a peptide bond to the light chain polypeptide.
Accordingly, one example of arrangement 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH and CHI, and the light chain polypeptide that includes VL and CL, in which the linker sequence is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
A second example of arrangement of 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH and CHI, and the light chain polypeptide that includes VL and CL, in which the heterologous nucleic acid sequence encoding the protease cleavage site is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
A third example of arrangement 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH, CHI, hinge region, CH2, and CH3, and the light chain polypeptide that includes VL and CL, in which the linker sequence is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide.
A forth example of arrangement of 2 can include the vector (and thus recombinant nucleic acid sequence construct) encoding the heavy chain polypeptide that includes VH, CHI, hinge region, CH2, and CH3, and the light chain polypeptide that includes VL and CL, in which the heterologous nucleic acid sequence encoding the protease cleavage site is positioned between the heterologous nucleic acid sequence encoding the heavy chain polypeptide and the heterologous nucleic acid sequence encoding the light chain polypeptide. Expression from the Recombinant Nucleic Acid Sequence Construct
As described above, the recombinant nucleic acid sequence construct can include, amongst the one or more components, the heterologous nucleic acid sequence encoding the heavy chain polypeptide and/or the heterologous nucleic acid sequence encoding the light chain polypeptide. Accordingly, the recombinant nucleic acid sequence construct can facilitate expression of the heavy chain polypeptide and/or the light chain polypeptide.
When arrangement 1 as described above is utilized, the first recombinant nucleic acid sequence construct can facilitate the expression of the heavy chain polypeptide and the second recombinant nucleic acid sequence construct can facilitate expression of the light chain polypeptide. When arrangement 2 as described above is utilized, the recombinant nucleic acid sequence construct can facilitate the expression of the heavy chain polypeptide and the light chain polypeptide.
Upon expression, for example, but not limited to, in a cell, organism, or mammal, the heavy chain polypeptide and the light chain polypeptide can assemble into the synthetic antibody. In particular, the heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being capable of binding the antigen. In other embodiments, the heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being more immunogenic as compared to an antibody not assembled as described herein. In still other embodiments, the heavy chain polypeptide and the light chain polypeptide can interact with one another such that assembly results in the synthetic antibody being capable of eliciting or inducing an immune response against the antigen.
Vector
The recombinant nucleic acid sequence construct described above can be placed in one or more vectors. The one or more vectors can contain an origin of replication. The one or more vectors can be a plasmid, bacteriophage, bacterial artificial chromosome or yeast artificial chromosome. The one or more vectors can be either a self-replication extra chromosomal vector, or a vector which integrates into a host genome.
Vectors include, but are not limited to, plasmids, expression vectors, recombinant viruses, any form of recombinant "naked DNA" vector, and the like. A "vector" comprises a nucleic acid which can infect, transfect, transiently or permanently transduce a cell. It will be recognized that a vector can be a naked nucleic acid, or a nucleic acid complexed with protein or lipid. The vector optionally comprises viral or bacterial nucleic acids and/or proteins, and/or membranes (e.g., a cell membrane, a viral lipid envelope, etc.). Vectors include, but are not limited to replicons (e.g., RNA replicons, bacteriophages) to which fragments of DNA may be attached and become replicated. Vectors thus include, but are not limited to RNA, autonomous self-replicating circular or linear DNA or RNA (e.g., plasmids, viruses, and the like, see, e.g., U.S. Pat. No. 5,217,879), and include both the expression and non-expression plasmids. In some embodiments, the vector includes linear DNA, enzymatic DNA or synthetic DNA. Where a recombinant microorganism or cell culture is described as hosting an "expression vector" this includes both extra-chromosomal circular and linear DNA and DNA that has been incorporated into the host chromosome(s). Where a vector is being maintained by a host cell, the vector may either be stably replicated by the cells during mitosis as an autonomous structure, or is incorporated within the host's genome.
The one or more vectors can be a heterologous expression construct, which is generally a plasmid that is used to introduce a specific gene into a target cell. Once the expression vector is inside the cell, the heavy chain polypeptide and/or light chain polypeptide that are encoded by the recombinant nucleic acid sequence construct is produced by the cellular-transcription and translation machinery ribosomal complexes. The one or more vectors can express large amounts of stable messenger RNA, and therefore proteins.
(14) Expression Vector
The one or more vectors can be a circular plasmid or a linear nucleic acid. The circular plasmid and linear nucleic acid are capable of directing expression of a particular nucleotide sequence in an appropriate subject cell. The one or more vectors comprising the recombinant nucleic acid sequence construct may be chimeric, meaning that at least one of its components is heterologous with respect to at least one of its other components.
(15) Plasmid
The one or more vectors can be a plasmid. The plasmid may be useful for transfecting cells with the recombinant nucleic acid sequence construct. The plasmid may be useful for introducing the recombinant nucleic acid sequence construct into the subject. The plasmid may also comprise a regulatory sequence, which may be well suited for gene expression in a cell into which the plasmid is administered.
The plasmid may also comprise a mammalian origin of replication in order to maintain the plasmid extrachromosomally and produce multiple copies of the plasmid in a cell. The plasmid may be pVAXl, pCEP4 or pREP4 from Invitrogen (San Diego, CA), which may comprise the Epstein Barr virus origin of replication and nuclear antigen EBNA-1 coding region, which may produce high copy episomal replication without integration. The backbone of the plasmid may be pAV0242. The plasmid may be a replication defective adenovirus type 5 (Ad5) plasmid.
The plasmid may be pSE420 (Invitrogen, San Diego, Calif), which may be used for protein production in Escherichia coli (E.coli). The plasmid may also be pYES2 (Invitrogen, San Diego, Calif), which may be used for protein production in Saccharomyces cerevisiae strains of yeast. The plasmid may also be of the MAXBAC™ complete baculovirus expression system (Invitrogen, San Diego, Calif), which may be used for protein production in insect cells. The plasmid may also be pcDNAI or pcDNA3 (Invitrogen, San Diego, Calif), which may be used for protein production in mammalian cells such as Chinese hamster ovary (CHO) cells.
(16) RNA
In one embodiment, the nucleic acid is an RNA molecule. In one embodiment, the RNA molecule is transcribed from a DNA sequence described herein. For example, in some embodiments, the RNA molecule is encoded by a DNA sequence at least 90% homologous to one of SEQ ID NOs:2 and 4. In another embodiment, the nucleotide sequence comprises an RNA sequence transcribed by a DNA sequence encoding a polypeptide sequence at least 90% homologous to one of SEQ ID NOs: 1, 3, and 5-28, or a variant thereof or a fragment thereof. Accordingly, in one embodiment, the invention provides an RNA molecule encoding one or more of the MAbs or DMAbs. The RNA may be plus -stranded. Accordingly, in some embodiments, the RNA molecule can be translated by cells without needing any intervening replication steps such as reverse transcription. A RNA molecule useful with the invention may have a 5' cap (e.g. a 7-methylguanosine). This cap can enhance in vivo translation of the RNA. The 5' nucleotide of a RNA molecule useful with the invention may have a 5' triphosphate group. In a capped RNA this may be linked to a 7-methylguanosine via a 5'-to-5' bridge. A RNA molecule may have a 3' poly -A tail. It may also include a poly-A polymerase recognition sequence (e.g. AAUAAA) near its 3' end. A RNA molecule useful with the invention may be single-stranded. A RNA molecule useful with the invention may comprise synthetic RNA. In some embodiments, the RNA molecule is a naked RNA molecule. In one embodiment, the RNA molecule is comprised within a vector.
In one embodiment, the RNA has 5' and 3' UTRs. In one embodiment, the 5' UTR is between zero and 3000 nucleotides in length. The length of 5' and 3' UTR sequences to be added to the coding region can be altered by different methods, including, but not limited to, designing primers for PCR that anneal to different regions of the UTRs. Using this approach, one of ordinary skill in the art can modify the 5' and 3' UTR lengths required to achieve optimal translation efficiency following transfection of the transcribed RNA.
The 5' and 3' UTRs can be the naturally occurring, endogenous 5' and 3' UTRs for the gene of interest. Alternatively, UTR sequences that are not endogenous to the gene of interest can be added by incorporating the UTR sequences into the forward and reverse primers or by any other modifications of the template. The use of UTR sequences that are not endogenous to the gene of interest can be useful for modifying the stability and/or translation efficiency of the RNA. For example, it is known that AU-rich elements in 3' UTR sequences can decrease the stability of RNA. Therefore, 3' UTRs can be selected or designed to increase the stability of the transcribed RNA based on properties of UTRs that are well known in the art.
In one embodiment, the 5' UTR can contain the Kozak sequence of the endogenous gene. Alternatively, when a 5' UTR that is not endogenous to the gene of interest is being added by PCR as described above, a consensus Kozak sequence can be redesigned by adding the 5' UTR sequence. Kozak sequences can increase the efficiency of translation of some RNA transcripts, but does not appear to be required for all RNAs to enable efficient translation. The requirement for Kozak sequences for many RNAs is known in the art. In other embodiments, the 5' UTR can be derived from an RNA virus whose RNA genome is stable in cells. In other embodiments, various nucleotide analogues can be used in the 3' or 5' UTR to impede exonuclease degradation of the RNA.
In one embodiment, the RNA has both a cap on the 5' end and a 3' poly(A) tail which determine ribosome binding, initiation of translation and stability of RNA in the cell.
In one embodiment, the RNA is a nucleoside-modified RNA. Nucleoside-modified RNA have particular advantages over non-modified RNA, including for example, increased stability, low or absent innate immunogenicity, and enhanced translation.
(17) Circular and Linear Vector
The one or more vectors may be circular plasmid, which may transform a target cell by integration into the cellular genome or exist extrachromosomally (e.g., autonomous replicating plasmid with an origin of replication). The vector can be pVAX, pcDNA3.0, or provax, or any other expression vector capable of expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct. Also provided herein is a linear nucleic acid, or linear expression cassette ("LEC"), that is capable of being efficiently delivered to a subject via electroporation and expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct. The LEC may be any linear DNA devoid of any phosphate backbone. The LEC may not contain any antibiotic resistance genes and/or a phosphate backbone. The LEC may not contain other nucleic acid sequences unrelated to the desired gene expression.
The LEC may be derived from any plasmid capable of being linearized. The plasmid may be capable of expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct. The plasmid can be pNP (Puerto Rico/34) or pM2 (New Caledonia/99). The plasmid may be WLV009, pVAX, pcDNA3.0, or provax, or any other expression vector capable of expressing the heavy chain polypeptide and/or light chain polypeptide encoded by the recombinant nucleic acid sequence construct.
The LEC can be pcrM2. The LEC can be pcrNP. pcrNP and pcrMR can be derived from pNP (Puerto Rico/34) and pM2 (New Caledonia/99), respectively.
(18) Viral Vectors
In one embodiment, viral vectors are provided herein which are capable of delivering a nucleic acid of the invention to a cell. The expression vector may be provided to a cell in the form of a viral vector. Viral vector technology is well known in the art and is described, for example, in Sambrook et al. (2001), and in Ausubel et al. (1997), and in other virology and molecular biology manuals. Viruses, which are useful as vectors include, but are not limited to, retroviruses, adenoviruses, adeno-associated viruses, herpes viruses, and lentiviruses. In general, a suitable vector contains an origin of replication functional in at least one organism, a promoter sequence, convenient restriction endonuclease sites, and one or more selectable markers. (See, e.g., WO 01/96584; WO 01/29058; and U.S. Pat. No.
6,326,193. Viral vectors, and especially retroviral vectors, have become the most widely used method for inserting genes into mammalian, e.g., human cells. Other viral vectors can be derived from lentivirus, poxviruses, herpes simplex virus I, adenoviruses and adeno- associated viruses, and the like. See, for example, U.S. Pat. Nos. 5,350,674 and 5,585,362. (19) Method of Preparing the Vector
Provided herein is a method for preparing the one or more vectors in which the recombinant nucleic acid sequence construct has been placed. After the final subcloning step, the vector can be used to inoculate a cell culture in a large scale fermentation tank, using known methods in the art.
In other embodiments, after the final subcloning step, the vector can be used with one or more electroporation (EP) devices. The EP devices are described below in more detail.
The one or more vectors can be formulated or manufactured using a combination of known devices and techniques, but preferably they are manufactured using a plasmid manufacturing technique that is described in a licensed, co-pending U.S. provisional application U.S. Serial No. 60/939,792, which was filed on May 23, 2007. In some examples, the DNA plasmids described herein can be formulated at concentrations greater than or equal to 10 mg/mL. The manufacturing techniques also include or incorporate various devices and protocols that are commonly known to those of ordinary skill in the art, in addition to those described in U.S. Serial No. 60/939792, including those described in a licensed patent, US Patent No. 7,238,522, which issued on July 3, 2007. The above-referenced application and patent, US Serial No. 60/939,792 and US Patent No. 7,238,522, respectively, are hereby incorporated in their entirety.
8. Antibody
As described above, the recombinant nucleic acid sequence can encode the antibody, a fragment thereof, a variant thereof, or a combination thereof. The antibody can bind or react with the antigen, which is described in more detail below.
The antibody may comprise a heavy chain and a light chain complementarity determining region ("CDR") set, respectively interposed between a heavy chain and a light chain framework ("FR") set which provide support to the CDRs and define the spatial relationship of the CDRs relative to each other. The CDR set may contain three hypervariable regions of a heavy or light chain V region. Proceeding from the N-terminus of a heavy or light chain, these regions are denoted as "CDR1," "CDR2," and "CDR3," respectively. An antigen-binding site, therefore, may include six CDRs, comprising the CDR set from each of a heavy and a light chain V region.
The proteolytic enzyme papain preferentially cleaves IgG molecules to yield several fragments, two of which (the F(ab) fragments) each comprise a covalent heterodimer that includes an intact antigen-binding site. The enzyme pepsin is able to cleave IgG molecules to provide several fragments, including the F(ab')2 fragment, which comprises both antigen- binding sites. Accordingly, the antibody can be the Fab or F(ab')2. The Fab can include the heavy chain polypeptide and the light chain polypeptide. The heavy chain polypeptide of the Fab can include the VH region and the CHI region. The light chain of the Fab can include the VL region and CL region.
The antibody can be an immunoglobulin (Ig). The Ig can be, for example, IgA, IgM, IgD, IgE, and IgG. The immunoglobulin can include the heavy chain polypeptide and the light chain polypeptide. The heavy chain polypeptide of the immunoglobulin can include a VH region, a CHI region, a hinge region, a CH2 region, and a CH3 region. The light chain polypeptide of the immunoglobulin can include a VL region and CL region.
The antibody can be a polyclonal or monoclonal antibody. The antibody can be a chimeric antibody, a single chain antibody, an affinity matured antibody, a human antibody, a humanized antibody, or a fully human antibody. The humanized antibody can be an antibody from a non-human species that binds the desired antigen having one or more
complementarity determining regions (CDRs) from the non-human species and framework regions from a human immunoglobulin molecule.
The antibody can be a bispecific antibody as described below in more detail. The antibody can be a bifunctional antibody as also described below in more detail.
As described above, the antibody can be generated in the subject upon administration of the composition to the subject. The antibody may have a half-life within the subject. In some embodiments, the antibody may be modified to extend or shorten its half-life within the subject. Such modifications are described below in more detail.
The antibody can be defucosylated as described in more detail below.
The antibody may be modified to reduce or prevent antibody-dependent enhancement (ADE) of disease associated with the antigen as described in more detail below.
Bispecific Antibody
The recombinant nucleic acid sequence can encode a bispecific antibody, a fragment thereof, a variant thereof, or a combination thereof. The bispecific antibody can bind or react with two antigens, for example, two of the antigens described below in more detail. The bispecific antibody can be comprised of fragments of two of the antibodies described herein, thereby allowing the bispecific antibody to bind or react with two desired target molecules, which may include the antigen, which is described below in more detail, a ligand, including a ligand for a receptor, a receptor, including a ligand-binding site on the receptor, a ligand- receptor complex, and a marker.
The invention provides novel bispecific antibodies comprising a first antigen-binding site that specifically binds to a first target and a second antigen-binding site that specifically binds to a second target, with particularly advantageous properties such as producibility, stability, binding affinity, biological activity, specific targeting of certain T cells, targeting efficiency and reduced toxicity. In some instances, there are bispecific antibodies, wherein the bispecific antibody binds to the first target with high affinity and to the second target with low affinity. In other instances, there are bispecific antibodies, wherein the bispecific antibody binds to the first target with low affinity and to the second target with high affinity. In other instances, there are bispecific antibodies, wherein the bispecific antibody binds to the first target with a desired affinity and to the second target with a desired affinity.
In one embodiment, the bispecific antibody is a bivalent antibody comprising a) a first light chain and a first heavy chain of an antibody specifically binding to a first antigen, and b) a second light chain and a second heavy chain of an antibody specifically binding to a second antigen.
A bispecific antibody molecule according to the invention may have two binding sites of any desired specificity. In some embodiments, one of the binding sites is capable of binding a tumor associated antigen. In some embodiments, the binding site included in the Fab fragment is a binding site specific for a MAYV antigen. In some embodiments, the binding site included in the single chain Fv fragment is a binding site specific for a MAYV antigen such as a MAYV capsid antigen or a MAYV envelope antigen, for example MAYV- El , MAYV-E2, MAYV-E3, or MAYV-6K.
In some embodiments, one of the binding sites of an antibody molecule according to the invention is able to bind a T-cell specific receptor molecule and/or a natural killer cell (NK cell) specific receptor molecule. A T-cell specific receptor is the so called "T-cell receptor" (TCRs), which allows a T cell to bind to and, if additional signals are present, to be activated by and respond to an epitope/antigen presented by another cell called the antigen- presenting cell or APC. The T cell receptor is known to resemble a Fab fragment of a naturally occurring immunoglobulin. It is generally monovalent, encompassing .alpha.- and .beta. -chains, in some embodiments, it encompasses .gamma. -chains and .delta. -chains (supra). Accordingly, in some embodiments, the TCR is TCR (alpha/beta) and in some embodiments, it is TCR (gamma/delta). The T cell receptor forms a complex with the CD3 T- Cell co-receptor. CD3 is a protein complex and is composed of four distinct chains. In mammals, the complex contains a CD3y chain, a CD36 chain, and two CD3E chains. These chains associate with a molecule known as the T cell receptor (TCR) and the ζ-chain to generate an activation signal in T lymphocytes. Hence, in some embodiments, a T-cell specific receptor is the CD3 T-Cell co-receptor. In some embodiments, a T-cell specific receptor is CD28, a protein that is also expressed on T cells. CD28 can provide co- stimulatory signals, which are required for T cell activation. CD28 plays important roles in T- cell proliferation and survival, cytokine production, and T-helper type-2 development. Yet a further example of a T-cell specific receptor is CD134, also termed Ox40. CD134/OX40 is being expressed after 24 to 72 hours following activation and can be taken to define a secondary costimulatory molecule. Another example of a T-cell receptor is 4-1 BB capable of binding to 4-1 BB-Ligand on antigen presenting cells (APCs), whereby a costimulatory signal for the T cell is generated. Another example of a receptor predominantly found on T- cells is CD5, which is also found on B cells at low levels. A further example of a receptor modifying T cell functions is CD95, also known as the Fas receptor, which mediates apoptotic signaling by Fas-ligand expressed on the surface of other cells. CD95 has been reported to modulate TCR/CD3 -driven signaling pathways in resting T lymphocytes.
An example of a NK cell specific receptor molecule is CD 16, a low affinity Fc receptor and NKG2D. An example of a receptor molecule that is present on the surface of both T cells and natural killer (NK) cells is CD2 and further members of the CD2- superfamily. CD2 is able to act as a co-stimulatory molecule on T and NK cells.
In some embodiments, the first binding site of the antibody molecule binds a MAYV antigen and the second binding site binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule.
In some embodiments, the first binding site of the antibody molecule binds one of MAYV-capsid, MAYV -El, MAYV-E1, MAYV-E2, MAYV-E3, or MAYV-6K or a polyprotein comprising any combination thereof, and the second binding site binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule. In some embodiments, the first binding site of the antibody molecule binds a MAYV antigen and the second binding site binds one of CD3, the T cell receptor (TCR), CD28, CD 16, NKG2D, Ox40, 4-1BB, CD2, CD5 and CD95.
In some embodiments, the first binding site of the antibody molecule binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule and the second binding site binds a MAYV antigen. In some embodiments, the first binding site of the antibody binds a T cell specific receptor molecule and/or a natural killer (NK) cell specific receptor molecule and the second binding site binds one of MAYV-capsid, MAYV- El, MAYV-E1, MAYV-E2, MAYV-E3, or MAYV-6K or a polyprotein comprising any combination thereof. In some embodiments, the first binding site of the antibody binds one of CD3, the T cell receptor (TCR), CD28, CD16, NKG2D, Ox40, 4-lBB, CD2, CD5 and CD95, and the second binding site binds a MAYV antigen.
Bifunctional Antibody
The recombinant nucleic acid sequence can encode a bifunctional antibody, a fragment thereof, a variant thereof, or a combination thereof. The bifunctional antibody can bind or react with the antigen described below. The bifunctional antibody can also be modified to impart an additional functionality to the antibody beyond recognition of and binding to the antigen. Such a modification can include, but is not limited to, coupling to factor H or a fragment thereof. Factor H is a soluble regulator of complement activation and thus, may contribute to an immune response via complement-mediated lysis (CML).
Extension of Antibody Half-Life
As described above, the antibody may be modified to extend or shorten the half-life of the antibody in the subject. The modification may extend or shorten the half-life of the antibody in the serum of the subject.
The modification may be present in a constant region of the antibody. The modification may be one or more amino acid substitutions in a constant region of the antibody that extend the half-life of the antibody as compared to a half-life of an antibody not containing the one or more amino acid substitutions. The modification may be one or more amino acid substitutions in the CH2 domain of the antibody that extend the half-life of the antibody as compared to a half-life of an antibody not containing the one or more amino acid substitutions.
In some embodiments, the one or more amino acid substitutions in the constant region may include replacing a methionine residue in the constant region with a tyrosine residue, a serine residue in the constant region with a threonine residue, a threonine residue in the constant region with a glutamate residue, or any combination thereof, thereby extending the half-life of the antibody. In other embodiments, the one or more amino acid substitutions in the constant region may include replacing a methionine residue in the CH2 domain with a tyrosine residue, a serine residue in the CH2 domain with a threonine residue, a threonine residue in the CH2 domain with a glutamate residue, or any combination thereof, thereby extending the half-life of the antibody.
Defucosylation
The recombinant nucleic acid sequence can encode an antibody that is not fucosylated (i.e., a defucosylated antibody or a non-fucosylated antibody), a fragment thereof, a variant thereof, or a combination thereof. Fucosylation includes the addition of the sugar fucose to a molecule, for example, the attachment of fucose to N-glycans, O-glycans and glycolipids. Accordingly, in a defucosylated antibody, fucose is not attached to the carbohydrate chains of the constant region. In turn, this lack of fucosylation may improve FcyRIIIa binding and antibody directed cellular cytotoxic (ADCC) activity by the antibody as compared to the fucosylated antibody. Therefore, in some embodiments, the non-fucosylated antibody may exhibit increased ADCC activity as compared to the fucosylated antibody.
The antibody may be modified so as to prevent or inhibit fucosylation of the antibody. In some embodiments, such a modified antibody may exhibit increased ADCC activity as compared to the unmodified antibody. The modification may be in the heavy chain, light chain, or a combination thereof. The modification may be one or more amino acid substitutions in the heavy chain, one or more amino acid substitutions in the light chain, or a combination thereof.
Reduced ADE Response
The antibody may be modified to reduce or prevent antibody-dependent enhancement (ADE) of disease associated with the antigen, but still neutralize the antigen.
In some embodiments, the antibody may be modified to include one or more amino acid substitutions that reduce or prevent binding of the antibody to FcyRla. The one or more amino acid substitutions may be in the constant region of the antibody. The one or more amino acid substitutions may include replacing a leucine residue with an alanine residue in the constant region of the antibody, i.e., also known herein as LA, LA mutation or LA substitution. The one or more amino acid substitutions may include replacing two leucine residues, each with an alanine residue, in the constant region of the antibody and also known herein as LALA, LALA mutation, or LALA substitution. The presence of the LALA substitutions may prevent or block the antibody from binding to FcyRla, and thus, the modified antibody does not enhance or cause ADE of disease associated with the antigen, but still neutralizes the antigen.
Monoclonal Antibodies
In one embodiment, the invention provides anti-MAYV antibodies. The antibodies may be intact monoclonal antibodies, and immunologically active fragments (e.g., a Fab or (Fab)2 fragment), a monoclonal antibody heavy chain, or a monoclonal antibody light chain.
The antibody may comprise a heavy chain and a light chain complementarity determining region ("CDR") set, respectively interposed between a heavy chain and a light chain framework ("FR") set which provide support to the CDRs and define the spatial relationship of the CDRs relative to each other. The CDR set may contain three hypervariable regions of a heavy or light chain V region. Proceeding from the N-terminus of a heavy or light chain, these regions are denoted as "CDR1," "CDR2," and "CDR3," respectively. An antigen-binding site, therefore, may include six CDRs, comprising the CDR set from each of a heavy and a light chain V region.
The antibody can be an immunoglobulin (Ig). The Ig can be, for example, IgA, IgM, IgD, IgE, and IgG. The immunoglobulin can include the heavy chain polypeptide and the light chain polypeptide. The heavy chain polypeptide of the immunoglobulin can include a VH region, a CHI region, a hinge region, a CH2 region, and a CH3 region. The light chain polypeptide of the immunoglobulin can include a VL region and CL region.
In one embodiment, the anti-MAYV antibody comprises a heavy chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO:5-16, or a fragment thereof. In one embodiment, the anti-MAYV antibody comprises a heavy chain comprising an amino acid sequence set forth in one of SEQ ID NO:5-16, or a fragment thereof.
In one embodiment, the anti-MAYV antibody comprises a heavy chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence at least 90% homologous to one of SEQ ID NO:29-64. In one embodiment, the anti-MAYV antibody comprises a heavy chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence set forth in one of SEQ ID NO:29-64.
In one embodiment, the anti-MAYV antibody comprises a light chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NO: 17-28, or a fragment thereof. In one embodiment, the anti-MAYV antibody comprises a light chain comprising an amino acid sequence set forth in one of SEQ ID NO: 17-28, or a fragment thereof.
In one embodiment, the anti-MAYV antibody comprises a light chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence at least 90% homologous to one of SEQ ID NO: 65 -100. In one embodiment, the anti-MAYV antibody comprises a light chain comprising 3 CDRs wherein each CDR independently comprises an amino acid sequence set forth in one of SEQ ID NO:65-100.
In one embodiment, the anti-MAYV antibody comprises an amino acid sequence at least 90% homologous to one of SEQ ID NO: 1 and 3, or a fragment thereof. In one embodiment, the anti-MAYV antibody comprises an amino acid sequence set forth in one of SEQ ID NO: 1 and 3, or a fragment thereof.
9. Antigen
The synthetic antibody is directed to the antigen or fragment or variant thereof. The antigen can be a nucleic acid sequence, an amino acid sequence, a polysaccharide or a combination thereof. The nucleic acid sequence can be DNA, RNA, cDNA, a variant thereof, a fragment thereof, or a combination thereof. The amino acid sequence can be a protein, a peptide, a variant thereof, a fragment thereof, or a combination thereof. The polysaccharide can be a nucleic acid encoded polysaccharide.
The antigen can be from a virus. The antigen can be associated with viral infection. In one embodiment, the antigen can be associated with Mayaro virus infection. In one embodiment, the antigen can be a Mayaro Capsid protein or a Mayaro envelope protein. In one embodiment, the Mayaro envelope protein can include Mayaro-El, E2, E3, or 6K.
In one embodiment, the antigen can be a fragment of a Mayaro Capsid protein or a Mayaro envelope protein. For example, in one embodiment, the antigen is a fragment of a Mayaro Capsid, wherein the fragment comprises the amino acid sequence
EGHYNWHYGAV Q YTG (SEQ ID NO: 101). In one embodiment, the antigen is a fragment of a Mayaro Envelope protein, wherein the fragment comprises the amino acid sequence GRSVIHFSTASAAPS (SEQ ID NO: 102) or LAKCPPGEVISVSFV (SEQ ID NO: 103)
In one embodiment, a synthetic antibody of the invention targets two or more antigens. In one embodiment, at least one antigen of a bispecific antibody is selected from the antigens described herein. In one embodiment, the two or more antigens are selected from the antigens described herein. Viral Antigens
The viral antigen can be a viral antigen or fragment or variant thereof. The virus can be a disease-causing virus. The virus can be a Mayaro virus.
The antigen may be a Mayaro viral antigen, or fragment thereof, or variant thereof. The Mayaro antigen can be from a factor that allows the virus to replicate, infect or survive. Factors that allow a Mayaro virus to replicate or survive include, but are not limited to structural proteins and non-structural proteins. Such a protein can be an envelope protein or a capsid protein. In one embodiment, a capsid protein is Mayaro Capsid. In one embodiment, an envelope protein is Mayaro El, E2, E3, 6K or a polyprotein comprising any combination thereof.
10. Excipients and Other Components of the Composition
The composition may further comprise a pharmaceutically acceptable excipient. The pharmaceutically acceptable excipient can be functional molecules such as vehicles, carriers, or diluents. The pharmaceutically acceptable excipient can be a transfection facilitating agent, which can include surface active agents, such as immune-stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs, vesicles such as squalene and squalene, hyaluronic acid, lipids, liposomes, calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents.
The transfection facilitating agent is a polyanion, poly cation, including poly-L- glutamate (LGS), or lipid. The transfection facilitating agent is poly-L-glutamate, and the poly-L-glutamate may be present in the composition at a concentration less than 6 mg/ml. The transfection facilitating agent may also include surface active agents such as immune- stimulating complexes (ISCOMS), Freunds incomplete adjuvant, LPS analog including monophosphoryl lipid A, muramyl peptides, quinone analogs and vesicles such as squalene and squalene, and hyaluronic acid may also be used administered in conjunction with the composition. The composition may also include a transfection facilitating agent such as lipids, liposomes, including lecithin liposomes or other liposomes known in the art, as a DNA-liposome mixture (see for example W09324640), calcium ions, viral proteins, polyanions, poly cations, or nanoparticles, or other known transfection facilitating agents. The transfection facilitating agent is a polyanion, poly cation, including poly-L-glutamate (LGS), or lipid. Concentration of the transfection agent in the vaccine is less than 4 mg/ml, less than 2 mg/ml, less than 1 mg/ml, less than 0.750 mg/ml, less than 0.500 mg/ml, less than 0.250 mg/ml, less than 0.100 mg/ml, less than 0.050 mg/ml, or less than 0.010 mg/ml.
The composition may further comprise a genetic facilitator agent as described in U.S. Serial No. 021,579 filed April 1, 1994, which is fully incorporated by reference.
The composition may comprise DNA at quantities of from about 1 nanogram to 100 milligrams; about 1 microgram to about 10 milligrams; or preferably about 0.1 microgram to about 10 milligrams; or more preferably about 1 milligram to about 2 milligram. In some preferred embodiments, composition according to the present invention comprises about 5 nanogram to about 1000 micrograms of DNA. In some preferred embodiments, composition can contain about 10 nanograms to about 800 micrograms of DNA. In some preferred embodiments, the composition can contain about 0.1 to about 500 micrograms of DNA. In some preferred embodiments, the composition can contain about 1 to about 350 micrograms of DNA. In some preferred embodiments, the composition can contain about 25 to about 250 micrograms, from about 100 to about 200 microgram, from about 1 nanogram to 100 milligrams; from about 1 microgram to about 10 milligrams; from about 0.1 microgram to about 10 milligrams; from about 1 milligram to about 2 milligram, from about 5 nanogram to about 1000 micrograms, from about 10 nanograms to about 800 micrograms, from about 0.1 to about 500 micrograms, from about 1 to about 350 micrograms, from about 25 to about 250 micrograms, from about 100 to about 200 microgram of DNA.
The composition can be formulated according to the mode of administration to be used. An injectable pharmaceutical composition can be sterile, pyrogen free and particulate free. An isotonic formulation or solution can be used. Additives for isotonicity can include sodium chloride, dextrose, mannitol, sorbitol, and lactose. The composition can comprise a vasoconstriction agent. The isotonic solutions can include phosphate buffered saline. The composition can further comprise stabilizers including gelatin and albumin. The stabilizers can allow the formulation to be stable at room or ambient temperature for extended periods of time, including LGS or polycations or polyanions.
11. Method of Generating the Synthetic Antibody
The present invention also relates a method of generating the synthetic antibody. The method can include administering the composition to the subject in need thereof by using the method of delivery described in more detail below. Accordingly, the synthetic antibody is generated in the subject or in vivo upon administration of the composition to the subject. The method can also include introducing the composition into one or more cells, and therefore, the synthetic antibody can be generated or produced in the one or more cells. The method can further include introducing the composition into one or more tissues, for example, but not limited to, skin and muscle, and therefore, the synthetic antibody can be generated or produced in the one or more tissues.
12. Method of Identifying or Screening for the Antibody
The present invention further relates to a method of identifying or screening for the antibody described above, which is reactive to or binds the antigen described above. The method of identifying or screening for the antibody can use the antigen in methodologies known in those skilled in art to identify or screen for the antibody. Such methodologies can include, but are not limited to, selection of the antibody from a library (e.g., phage display) and immunization of an animal followed by isolation and/or purification of the antibody.
13. Method of Delivery of the Composition
The present invention also relates to a method of delivering the composition to the subject in need thereof. The method of delivery can include, administering the composition to the subject. Administration can include, but is not limited to, DNA injection with and without in vivo electroporation, liposome mediated delivery, and nanoparticle facilitated delivery.
The mammal receiving delivery of the composition may be human, primate, non- human primate, cow, cattle, sheep, goat, antelope, bison, water buffalo, bison, bovids, deer, hedgehogs, elephants, llama, alpaca, mice, rats, and chicken.
The composition may be administered by different routes including orally, parenterally, sublingually, trans dermally, rectally, transmucosally, topically, via inhalation, via buccal administration, intrapleurally, intravenous, intraarterial, intraperitoneal, subcutaneous, intramuscular, intranasal, intrathecal, and intraarticular or combinations thereof. For veterinary use, the composition may be administered as a suitably acceptable formulation in accordance with normal veterinary practice. The veterinarian can readily determine the dosing regimen and route of administration that is most appropriate for a particular animal. The composition may be administered by traditional syringes, needleless injection devices, "microprojectile bombardment gone guns", or other physical methods such as electroporation ("EP"), "hydrodynamic method", or ultrasound. Electroporation
Administration of the composition via electroporation may be accomplished using electroporation devices that can be configured to deliver to a desired tissue of a mammal, a pulse of energy effective to cause reversible pores to form in cell membranes, and preferable the pulse of energy is a constant current similar to a preset current input by a user. The electroporation device may comprise an electroporation component and an electrode assembly or handle assembly. The electroporation component may include and incorporate one or more of the various elements of the electroporation devices, including: controller, current waveform generator, impedance tester, waveform logger, input element, status reporting element, communication port, memory component, power source, and power switch. The electroporation may be accomplished using an in vivo electroporation device, for example CELLECTRA EP system (Inovio Pharmaceuticals, Plymouth Meeting, PA) or Elgen electroporator (Inovio Pharmaceuticals, Plymouth Meeting, PA) to facilitate transfection of cells by the plasmid.
The electroporation component may function as one element of the electroporation devices, and the other elements are separate elements (or components) in communication with the electroporation component. The electroporation component may function as more than one element of the electroporation devices, which may be in communication with still other elements of the electroporation devices separate from the electroporation component. The elements of the electroporation devices existing as parts of one electromechanical or mechanical device may not limited as the elements can function as one device or as separate elements in communication with one another. The electroporation component may be capable of delivering the pulse of energy that produces the constant current in the desired tissue, and includes a feedback mechanism. The electrode assembly may include an electrode array having a plurality of electrodes in a spatial arrangement, wherein the electrode assembly receives the pulse of energy from the electroporation component and delivers same to the desired tissue through the electrodes. At least one of the plurality of electrodes is neutral during delivery of the pulse of energy and measures impedance in the desired tissue and communicates the impedance to the electroporation component. The feedback mechanism may receive the measured impedance and can adjust the pulse of energy delivered by the electroporation component to maintain the constant current.
A plurality of electrodes may deliver the pulse of energy in a decentralized partem. The plurality of electrodes may deliver the pulse of energy in the decentralized partem through the control of the electrodes under a programmed sequence, and the programmed sequence is input by a user to the electroporation component. The programmed sequence may comprise a plurality of pulses delivered in sequence, wherein each pulse of the plurality of pulses is delivered by at least two active electrodes with one neutral electrode that measures impedance, and wherein a subsequent pulse of the plurality of pulses is delivered by a different one of at least two active electrodes with one neutral electrode that measures impedance.
The feedback mechanism may be performed by either hardware or software. The feedback mechanism may be performed by an analog closed-loop circuit. The feedback occurs every 50 μβ, 20 μβ, 10 or 1 μβ, but is preferably a real-time feedback or
instantaneous (i.e., substantially instantaneous as determined by available techniques for determining response time). The neutral electrode may measure the impedance in the desired tissue and communicates the impedance to the feedback mechanism, and the feedback mechanism responds to the impedance and adjusts the pulse of energy to maintain the constant current at a value similar to the preset current. The feedback mechanism may maintain the constant current continuously and instantaneously during the delivery of the pulse of energy.
Examples of electroporation devices and electroporation methods that may facilitate delivery of the composition of the present invention, include those described in U.S. Patent No. 7,245,963 by Draghia-Akli, et al, U.S. Patent Pub. 2005/0052630 submitted by Smith, et al., the contents of which are hereby incorporated by reference in their entirety. Other electroporation devices and electroporation methods that may be used for facilitating delivery of the composition include those provided in co-pending and co-owned U.S. Patent
Application, Serial No. 11/874072, filed October 17, 2007, which claims the benefit under 35 USC 119(e) to U.S. Provisional Applications Ser. Nos. 60/852,149, filed October 17, 2006, and 60/978,982, filed October 10, 2007, all of which are hereby incorporated in their entirety.
U.S. Patent No. 7,245,963 by Draghia-Akli, et al. describes modular electrode systems and their use for facilitating the introduction of a biomolecule into cells of a selected tissue in a body or plant. The modular electrode systems may comprise a plurality of needle electrodes; a hypodermic needle; an electrical connector that provides a conductive link from a programmable constant-current pulse controller to the plurality of needle electrodes; and a power source. An operator can grasp the plurality of needle electrodes that are mounted on a support structure and firmly insert them into the selected tissue in a body or plant. The biomolecules are then delivered via the hypodermic needle into the selected tissue. The programmable constant-current pulse controller is activated and constant-current electrical pulse is applied to the plurality of needle electrodes. The applied constant-current electrical pulse facilitates the introduction of the biomolecule into the cell between the plurality of electrodes. The entire content of U.S. Patent No. 7,245,963 is hereby incorporated by reference.
U.S. Patent Pub. 2005/0052630 submitted by Smith, et al. describes an electroporation device which may be used to effectively facilitate the introduction of a biomolecule into cells of a selected tissue in a body or plant. The electroporation device comprises an electro-kinetic device ("EKD device") whose operation is specified by software or firmware. The EKD device produces a series of programmable constant-current pulse patterns between electrodes in an array based on user control and input of the pulse parameters, and allows the storage and acquisition of current waveform data. The electroporation device also comprises a replaceable electrode disk having an array of needle electrodes, a central injection channel for an injection needle, and a removable guide disk. The entire content of U.S. Patent Pub.
2005/0052630 is hereby incorporated by reference.
The electrode arrays and methods described in U.S. Patent No. 7,245,963 and U.S. Patent Pub. 2005/0052630 may be adapted for deep penetration into not only tissues such as muscle, but also other tissues or organs. Because of the configuration of the electrode array, the injection needle (to deliver the biomolecule of choice) is also inserted completely into the target organ, and the injection is administered perpendicular to the target issue, in the area that is pre-delineated by the electrodes The electrodes described in U.S. Patent No. 7,245,963 and U.S. Patent Pub. 2005/005263 are preferably 20 mm long and 21 gauge.
Additionally, contemplated in some embodiments, that incorporate electroporation devices and uses thereof, there are electroporation devices that are those described in the following patents: US Patent 5,273,525 issued December 28, 1993, US Patents 6,110,161 issued August 29, 2000, 6,261,281 issued July 17, 2001, and 6,958,060 issued October 25, 2005, and US patent 6,939,862 issued September 6, 2005. Furthermore, patents covering subject matter provided in US patent 6,697,669 issued February 24, 2004, which concerns delivery of DNA using any of a variety of devices, and US patent 7,328,064 issued February 5, 2008, drawn to method of injecting DNA are contemplated herein. The above-patents are incorporated by reference in their entirety. 14. Method of Treatment
Also provided herein is a method of treating, protecting against, and/or preventing a MAYV infection or MAYV disease in a subject in need thereof by administering one or more compositions described herein. In one embodiment, the methods comprise administering one or more DMAb constructs such that a synthetic anti-MAYV antibody is generated in the subject. In one embodiment, the methods comprise administering one or more genetic constructs and proteins of the one or more MAYV antigens such that secreted proteins, or synthetic antigens, will be recognized as foreign by the immune system, which will mount an immune response that can include antibodies made against the one or more MAYV antigens. In one embodiment, the methods comprise administering one or more DMAb constructs and one or more genetic constructs and proteins of the one or more MAYV antigens. In one embodiment, administering a MAYV DMAb and a nucleic acid encoding a MAYV antigen provides an immediate, persistent and systemic anti-MAYV immune response. The method can include administering the composition to the subject. Administration of the composition to the subject can be done using the method of delivery described above.
In certain embodiments, the invention provides a method of treating protecting against, and/or preventing a Mayaro Virus infection. In one embodiment, the method treats, protects against, and/or prevents a disease associated with Mayaro Virus.
Upon generation of the synthetic antibody in the subject, the synthetic antibody can bind to or react with the antigen. Such binding can neutralize the antigen, block recognition of the antigen by another molecule, for example, a protein or nucleic acid, and elicit or induce an immune response to the antigen, thereby treating, protecting against, and/or preventing the disease associated with the antigen in the subject.
The method of delivering the vaccine or vaccination may be provided to induce a therapeutic and prophylactic immune response. The vaccination process may generate in the mammal an immune response against the antigen. The vaccine may be delivered to an individual to modulate the activity of the mammal's immune system and enhance the immune response. The delivery of the vaccine may be the transfection of the consensus antigen as a nucleic acid molecule that is expressed in the cell and delivered to the surface of the cell upon which the immune system recognized and induces a cellular, humoral, or cellular and humoral response. The delivery of the vaccine may be used to induce or elicit and immune response in mammals against the antigen by administering to the mammals the vaccine as discussed above. The composition dose can be between 1 μg to 10 mg active component kg body weight/time, and can be 20 μg to 10 mg component/kg body weight/time. The composition can be administered every 1 , 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 25, 26, 27, 28, 29, 30, or 31 days. The number of composition doses for effective treatment can be 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
The composition can comprise 1 or more, 2 or more, 3 or more, 4 or more, 5 or more, 6 or more, 7 or more, 8 or more, 9 or more, or 10 or more DNA vaccines encoding an antigen. The composition may comprise 1 or more, 2 or more, 3 or more, 4 or more, 5 or more, 6 or more, 7 or more, 8 or more, 9 or more, or 10 or more DNA encoded synthetic antibodies or fragments thereof.
The DNA vaccine and the DMAb may be administered at the same time or at different times. In one embodiment, the DNA vaccine and the DMAb are administered simultaneously. In one embodiment, the DNA vaccine is administered before the DMAb. In one embodiment, the DMAb is administered before the DNA vaccine.
In certain embodiments, the DNA vaccine is administered 1 or more days, 2 or more days, 3 or more days, 4 or more days, 5 or more days, 6 or more days, 7 or more days, 8 or more days, 9 or more days, 10 or more days, 1 1 or more days, 12 or more days, 13 or more days, or 14 or more days after the DMAb is administered. In certain embodiments, the DNA vaccine is administered 1 or more weeks, 2 or more weeks, 3 or more weeks, 4 or more weeks, 5 or more weeks, 6 or more weeks, 7 or more weeks, 8 or more weeks, 9 or more weeks, or 10 or more weeks after the DMAb is administered. In certain embodiments, the DNA vaccine is administered 1 or more months, 2 or more months, 3 or more months, 4 or more months, 5 or more months, 6 or more months, 7 or more months, 8 or more months, 9 or more months, 10 or more months, 1 1 or more months, or 12 or more months after the DMAb is administered.
In certain embodiments, the DMAb is administered 1 or more days, 2 or more days, 3 or more days, 4 or more days, 5 or more days, 6 or more days, 7 or more days, 8 or more days, 9 or more days, 10 or more days, 11 or more days, 12 or more days, 13 or more days, or 14 or more days after the DNA vaccine is administered. In certain embodiments, the DMAb is administered 1 or more weeks, 2 or more weeks, 3 or more weeks, 4 or more weeks, 5 or more weeks, 6 or more weeks, 7 or more weeks, 8 or more weeks, 9 or more weeks, or 10 or more weeks after the DNA vaccine is administered. In certain embodiments, the DMAb is administered 1 or more months, 2 or more months, 3 or more months, 4 or more months, 5 or more months, 6 or more months, 7 or more months, 8 or more months, 9 or more months, 10 or more months, 11 or more months, or 12 or more months after the DNA vaccine is administered.
In certain embodiments, the DMAb and DNA vaccine are administered once. In certain embodiments, the DMAb and/or the DNA vaccine are administered more than once. In certain embodiments, administration of the DMAb and DNA vaccine provides immediate, persistent, and systemic immune responses.
The composition dose can be between 1 μg to 10 mg active component kg body weight/time, and can be 20 μg to 10 mg component/kg body weight/time. The composition can be administered every 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, or 31 days. The number of composition doses for effective treatment can be 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
15. Use in Combination with Antibiotics
The present invention also provides a method of treating, protecting against, and/or preventing disease in a subject in need thereof by administering a combination of the synthetic antibody and a therapeutic antibiotic agent.
The synthetic antibody and an antibiotic agent may be administered using any suitable method such that a combination of the synthetic antibody and antibiotic agent are both present in the subject. In one embodiment, the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and administration of a second composition comprising an antibiotic agent less than 1, less than 2, less than 3, less than 4, less than 5, less than 6, less than 7, less than 8, less than 9 or less than 10 days following administration of the synthetic antibody. In one embodiment, the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and administration of a second composition comprising an antibiotic agent more than 1, more than 2, more than 3, more than 4, more than 5, more than 6, more than 7, more than 8, more than 9 or more than 10 days following administration of the synthetic antibody. In one embodiment, the method may comprise administration of a first composition comprising an antibiotic agent and administration of a second composition comprising a synthetic antibody of the invention by any of the methods described in detail above less than 1, less than 2, less than 3, less than 4, less than 5, less than 6, less than 7, less than 8, less than 9 or less than 10 days following administration of the antibiotic agent. In one embodiment, the method may comprise administration of a first composition comprising an antibiotic agent and administration of a second composition comprising a synthetic antibody of the invention by any of the methods described in detail above more than 1, more than 2, more than 3, more than 4, more than 5, more than 6, more than 7, more than 8, more than 9 or more than 10 days following administration of the antibiotic agent. In one embodiment, the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and a second composition comprising an antibiotic agent concurrently. In one embodiment, the method may comprise administration of a first composition comprising a synthetic antibody of the invention by any of the methods described in detail above and a second composition comprising an antibiotic agent concurrently. In one embodiment, the method may comprise administration of a single composition comprising a synthetic antibody of the invention and an antibiotic agent.
Non-limiting examples of antibiotics that can be used in combination with the synthetic antibody of the invention include aminoglycosides (e.g., gentamicin, amikacin, tobramycin), quinolones (e.g., ciprofloxacin, levofloxacin), cephalosporins (e.g., ceftazidime, cefepime, cefoperazone, cefpirome, ceftobiprole), antipseudomonal penicillins:
carboxypenicillins (e.g., carbenicillin and ticarcillin) and ureidopenicillins (e.g., mezlocillin, azlocillin, and piperacillin), carbapenems (e.g., meropenem, imipenem, doripenem), polymyxins (e.g., polymyxin B and colistin) and monobactams (e.g., aztreonam).
The present invention has multiple aspects, illustrated by the following non-limiting examples.
16. Generation of Antigens and Synthetic Antibodies In Vitro and Ex Vivo
In one embodiment, the MAYV antigen is generated in vitro or ex vivo. For example, in one embodiment, a nucleic acid encoding a MAYV antigen can be introduced and expressed in an in vitro or ex vivo cell. In one embodiment, the synthetic antibody is generated in vitro or ex vivo. For example, in one embodiment, a nucleic acid encoding a synthetic antibody can be introduced and expressed in an in vitro or ex vivo cell.
Methods of introducing and expressing genes into a cell are known in the art. In the context of an expression vector, the vector can be readily introduced into a host cell, e.g., mammalian, bacterial, yeast, or insect cell by any method in the art. For example, the expression vector can be transferred into a host cell by physical, chemical, or biological means. Physical methods for introducing a polynucleotide into a host cell include calcium phosphate precipitation, lipofection, particle bombardment, microinjection, electroporation, and the like. Methods for producing cells comprising vectors and/or exogenous nucleic acids are well-known in the art. See, for example, Sambrook et al. (2012, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, New York). A preferred method for the introduction of a polynucleotide into a host cell is calcium phosphate transfection.
Biological methods for introducing a polynucleotide of interest into a host cell include the use of DNA and RNA vectors. Viral vectors, and especially retroviral vectors, have become the most widely used method for inserting genes into mammalian, e.g., human cells. Other viral vectors can be derived from lentivirus, poxviruses, herpes simplex virus I, adenoviruses and adeno-associated viruses, and the like. See, for example, U. S. Pat. Nos. 5,350,674 and 5,585,362.
Chemical means for introducing a polynucleotide into a host cell include colloidal dispersion systems, such as macromolecule complexes, nanocapsules, microspheres, beads, and lipid-based systems including oil-in-water emulsions, micelles, mixed micelles, and liposomes. An exemplary colloidal system for use as a delivery vehicle in vitro and in vivo is a liposome (e.g., an artificial membrane vesicle).
In the case where a non-viral delivery system is utilized, an exemplary delivery vehicle is a liposome. The use of lipid formulations is contemplated for the introduction of the nucleic acids into a host cell (in vitro, ex vivo or in vivo). In another aspect, the nucleic acid may be associated with a lipid. The nucleic acid associated with a lipid may be encapsulated in the aqueous interior of a liposome, interspersed within the lipid bilayer of a liposome, attached to a liposome via a linking molecule that is associated with both the liposome and the oligonucleotide, entrapped in a liposome, complexed with a liposome, dispersed in a solution containing a lipid, mixed with a lipid, combined with a lipid, contained as a suspension in a lipid, contained or complexed with a micelle, or otherwise associated with a lipid. Lipid, lipid/DNA or lipid/expression vector associated compositions are not limited to any particular structure in solution. For example, they may be present in a bilayer structure, as micelles, or with a "collapsed" structure. They may also simply be interspersed in a solution, possibly forming aggregates that are not uniform in size or shape. Lipids are fatty substances which may be naturally occurring or synthetic lipids. For example, lipids include the fatty droplets that naturally occur in the cytoplasm as well as the class of compounds which contain long-chain aliphatic hydrocarbons and their derivatives, such as fatty acids, alcohols, amines, amino alcohols, and aldehydes.
17. Examples
The present invention is further illustrated in the following Examples. It should be understood that these Examples, while indicating preferred embodiments, of the invention, are given by way of illustration only. From the above discussion and these Examples, one skilled in the art can ascertain the essential characteristics of this invention, and without departing from the spirit and scope thereof, can make various changes and modifications of the invention to adapt it to various usages and conditions. Thus, various modifications of the invention in addition to those shown and described herein will be apparent to those skilled in the art from the foregoing description. Such modifications are also intended to fall within the scope of the appended claims.
Example 1
The data presented herein describes a scMAYV-E vaccine which encodes a synthetically designed, consensus full-length MAYV envelope antigen sequence. EP- enhanced delivery of scMAYV-E into immunocompetent mice induced high levels of cellular responses to multiple MAYV-E epitopes along with robust antibody responses that could neutralize MAYV infection in vitro. Immunization of interferon a/b receptor knockout mice (IFNAR"/_; A129) with scMAYV-E protected the mice from morbidity and mortality following MAYV challenge, where the protection in this model was primarily due to vaccine- induced humoral responses. The robust immunogenicity of the scMAYV-E vaccine demonstrates that this vaccine as a viable means to halt the spread of this virus and protect individuals from MAYV disease.
Materials and methods are now described
Cell Culture
Human embryonic kidney 293T (HEK293T; ATCC-CLR-N268) and Vero CCL-81 (ATCC #CCL-81) (ATCC, Manassas, VA, USA) cells were cultured in D10 media:
Dulbecco Modified Eagle's Medium (Invitrogen Life Science Technologies, San Diego, CA, USA) supplemented with 10% heat-inactivated fetal calf serum (FCS), 3 mM glutamine, 100 U/ml penicillin, and 100 U/ml streptomycin (Muthumani et al, 2016, NPJ Vaccines 1: 16021). Mouse splenocytes were cultured in RIO media: (RPMI1640, Invitrogen Life Science Technologies, San Diego, CA, USA) supplemented with 10% heat-inactivated FCS, 3 mM glutamine, 100 U/ml penicillin, and 100 U/ml streptomycin. All cell types were cultured in incubators set to 37°C and 5% CC .
MAYV vaccine construction and expression
The synthetic MAYV vaccine DNA construct encodes a full-length MAYV envelope sequence. The consensus gene insert was computationally optimized for improved expression. The construct was synthesized commercially (Genscript, NJ, USA) and then sub- cloned into a modified pVaxl vaccine expression vector under the control of the
cytomegalovirus immediate-early promoter.
HEK293T cells were plated in six-well plates at 6xl05 cells/well and transfected 24 hours later with scMAYV-E and pVaxl empty vector control plasmids using GeneJammer transfection reagent according to the manufacturer's instructions. The transfection was carried out in Opti-MEM medium. The transfected supernatants and cell lysates were collected 48 hours post transfection, and antigen expression was confirmed by western blot analysis. Cells were washed with phosphate-buffered saline (PBS) and lysed with lysis buffer containing 50 mM HC1, 150 mM NaCl, 1% Nonidet P-40, 1% Triton X-100, 0.1% sodium dodecyl sulfate, and a cocktail of protease inhibitors on ice for 30 minutes with intermediate vortexing. After 10 minutes of centrifugation at 13,000 rpm, the supernatant was collected and analyzed by sodium dodecyl sulfate-12% polyacrylamide gel electrophoresis and transferred to a nitrocellulose membrane for immunoblotting with antisera (1 : 100 dilution) against scMAYV- E. Secondary antibodies coupled to horseradish peroxidase (HRP) were used at a dilution of 1:5,000. For Immunofluorescence analysis, cells were seeded on top of coverslips in a 6-well cell culture plate. After washing three times with PBS, the cells were incubated for an hour at 37°C with a Fluorescein isothiocyanate (FITC)-conjugated goat anti-human IgG (Santa Cruz Biotechnology Inc., USA). The nucleus was stained with 4', 6-diamidino-2- phenylindole (DAPI) at room temperature for 20 minutes. PBS washes were performed after each incubation step. The samples were subsequently mounted onto glass slides using Fluoroshield Mounting Medium (Abeam, USA) and were viewed under a confocal microscope (LSM710). The resulting images were analyzed using Zen software. Animals & DNA Immunizations with Electroporation
Five- to eight-week old female C57BL/6 mice (The Jackson Laboratory, Bar Harbor, ME, USA) were housed and vaccinated in a light-cycled, temperature- and humidity-controlled animal facility. Four- to six-week old mice of C57BL/6 background deficient in the interferon-α/β receptors (IFNAR"/_, A129) were purchased from The Jackson Laboratory (MMRRC Repository-The Jackson Laboratory, USA).
For DNA immunization, five- to eight-week-old female C57BL/6 mice and four- to six- week old IFNAR_/" mice of mixed sex were delivered 25 μg of DNA in a total volume of 30 μΐ of sterile water by a syringe into the anterior tibialis (TA) muscle. The same site is immediately electroporated by the CELLECTRA® adaptive constant current enhanced electroporation (EP) delivery device (Inovio Pharmaceuticals, PA, USA), where a three- pronged minimally invasive device is inserted 2 mm into the TA muscle. Each prong consists of 26-gauge, solid stainless-steel electrode, and triangulated square-wave pulses of 0.1 Amps are delivered at 52 msec/pulse twice with a 1 second delay at the insertion site. Blood was collected by the submandibular method preceding the DNA injection and EP procedure. All mice were anesthetized with 2-5% isoflurane (Phoenix, Clipper, MO, USA) during procedures. Each group received one, two, or three immunizations at 2-week intervals, and mice were euthanized one week following the last immunization.
Splenocvte isolation and IFN-γ ELISpot assay
Spleens were dissected and individually crushed with the use of a Stomacher device (Seward, UK). Splenocytes were strained with a 40 μιτι cell strainer (ThermoFisher, USA) and treated 5 minutes with Ammonium-Chloride-Potassium (ACK) lysis buffer (Quality Biologicals, MD, USA) to lyse red blood cells. The splenocytes were resuspended in R10 and used in the Mouse IFN-γ ELISpot PLUS assay (Mabtech, USA) according to the
manufacturer's instructions. Briefly, 2xl05 splenocytes from the scMAYV-E or pVaxl control immunized mice were added to each well and incubated for 18 hours at 37°C in 5% CC , either in the presence of media alone (negative control), media with Cell Activation Cocktail (BioLegend, USA) containing pre-mixed phorbol 12-myristate-13- acetate (PMA) and ionomycin (positive control), or media with peptide pools (1 μg/ml) consisting of linearly pooled 20 individual peptides that are 15-mers overlapping by 9 amino acids spanning the length of the MAYV envelope protein. Spots were formed by the addition of 5-bromo-4- chloro-3-indolyl-phosphate/nitro blue tetrazolium (BCIP/NBT) color development substrate (R&D Systems, USA). Spot forming units (SFU) were quantified by an automated ELISpot reader (CTL Limited, USA). The average number of SFU from the media alone wells was subtracted from each stimulated well, and the data was adjusted to SFU per 106 splenocytes.
ELISA for detection of Ag-specific antibody
MaxiSorp high-binding 96-well ELISA plates (ThermoFisher, USA) were coated with purified recombinant protein at a concentration of 0.5 ug/mL in coating buffer (0.012 M
Na2CCb, 0.038 M NaHC03, pH 9.6) at 4°C overnight. Plates were washed 5 times with PBS buffer solution containing 0.01% Tween-20 (PBST) (ThermoFisher, USA), and blocked with 10% FBS in PBS at 37°C for 1 hour. Serum samples were serially diluted (starting 1 :50, dilution factor 3.16) in PBS containing 1% FBS, and 100 μΐ was added to each well. After incubation at 37°C for 2 hours, the plates were washed 5 times with PBST and then incubated with HRP-labeled goat anti-mouse IgG (Sigma- Aldrich, USA), at 37°C for 1 hour. After the final wash, 100 μΐ of fresh TMB Substrate (Sigma- Aldrich) was added per well and incubated for 10 minutes. The reaction was stopped by adding 50 μΐ of 2 M H2SO4, and the optical density of the plate was measured at 450 nm by Biotek ELISA plate reader (Biotek, USA). The antibody endpoint titer was defined as the highest dilution of a serum sample with OD values > (mean + 3SD) of pVaxl vaccinated mice. Samples with a titer <50 were given an endpoint titer of 1. All assays were done in triplicate. For mouse IgG subtyping, Pierce™ Rapid Antibody Isotyping Kit (ThermoFisher, USA) was used with 1: 100 dilution of pVaxl mouse sera or scMAYV-E immune sera from C57BL/6 background.
Flow cytometry and intracellular cytokine staining assay
2xl06 single-cell suspended mouse splenocytes were added per well to a U-bottom 96- well plate (ThermoFisher). Cells were stimulated for 5 hours at 37°C in 5% CO2, either in the presence of media alone (negative control), media with Cell Activation Cocktail
(BioLegend) containing pre-mixed PMA and ionomycin (positive control), or media with MAYV envelope peptides (^g/ml) spanning the length of the entire protein, where all of the samples contained a protein transport inhibitor cocktail (eBioscience, San Diego, CA, USA). Upon completed stimulation, the cells are washed with FACS buffer (PBS containing 0.1% sodium azide and 1% FBS). Cells were stained for the surface proteins using fluorochrome- conjugated antibodies per the manufacturer's instructions (BD Biosciences, San Diego, CA, USA). The cells were washed again with FACS buffer, then fixed and permeabilized using BD Cytofix/Cytoperm TM (BD Biosciences) per the manufacturer's protocol before the intracellular cytokines were stained using fluorchrome conjugated antibodies (BD Biosciences). The following antibodies were used for surface staining: LIVE/DEAD Fixable Violet Dead Cell stain kit (Invitrogen); CD19 (V450; clone 1D3; BD Biosciences); CD4 (FITC; clone RM4-5; eBioscience); CD8a (APC-Cy7; clone 53-6.7; BD Biosciences); CD44 (A700; clone IM7; BioLegend). For intracellular staining the following antibodies were used: IFN-γ (APC; clone XMG1.2; Biolegend); TNF-a (PE; clone MP6-XT22; eBioscience); CD3s (PerCP/Cy5.5; clone 145-2C11; Biolegend); IL-2 (PeCy7; clone JES6-SH4; ebioscience). The LSRII flow cytometer was outfitted with the following lasers and bandpass filters: (i) violet (405 nm) - 450/50, 525/50, 560/40, 585/42, 605/40, 660/40, 705/70, 780/60; (ii) blue (488 nm) - 530/30, 695/40; (iii) green (532 nm) - 575/25, 610/20, 660/20, 710/50, 780/60; and (iv) red (640nm) - 670/30, 710/50, 780/60. All data was collected using an LSRII flow cytometer (BD Biosciences) and analyzed using Flow Jo software (Tree Star, Ashland, OR, USA) and SPICE v5. Boolean gating was performed using FlowJo software to examine the polyfunctionality of the T cells from vaccinated animals.
Mavaro viral challenge experiments in IFNAR A mice
The Trinidad Regional Virus Laboratory (TRVL) 15537 strain of MAYV was obtained from ATCC® (ATCC® VR-1863TM), passaged once through cell culture, and quantified as previously described (Weise et al, 2014, PLoS Negl Trop Dis 8(8):e2969; Santiago et al., PLoS Negl Trop Dis 9(10):e0004104). One week after the second
immunization, 10 mice from either scMAYV-E vaccinated or pVaxl vaccinated groups were challenged with 102 plaque-forming units (PFU) of MAYV diluted in 100 μΐ of sterile PBS delivered by a gradual intraperitoneal (i.p.) inoculation. Mice were weighed daily and evaluated for clinical signs of infection as follows: (1) decreased mobility; (2) hunched posture; (3) footpad swelling; (4) decreased grip strength of the hindlimb; (5) paralysis of hindlimb(s); (6) moribund. The Wistar Institute IACUC does not approve death as an endpoint. Mice were euthanized if (1) weight loss was sustained for 3 days or more and total weight loss reaches 20% of the body weight, (2) mice exhibited 3 or more signs of clinical symptoms as listed above concurrently for over 3 days, or (3) mice were moribund. All mice that exhibited signs and symptoms of MAYV infection lasted no more than 7 days during the experiment(s). Whole blood was collected on day 6 post challenge for Mayaro viral titer quantification as described previously (Weise et al, 2014, PLoS Negl Trop Dis 8(8):e2969; Santiago et al., PLoS Negl Trop Dis 9(10):e0004104), and the footpad swelling of individual mouse was measured with a caliper on the same day. Eight days post challenge, the number of surviving mice was noted and humanely euthanized. Passive transfer of immune sera from immunized IFNAR -/" to naive IFNAR -/" mice
Four- to six-week old IFNAR"7" mice were immunized twice at a two-week interval. One week after the second immunization, immune sera were isolated from whole blood and combined into a single pool per group. Passive transfer of immune sera was performed by intraperitoneal (i.p.) injection at 200 μΐ per mouse into four- to six-week old naive IFNAR-/- mice. Mice receiving immune sera from the pVaxl immunized group or PBS served as negative controls. All groups were challenged with 102 PFU of wild-type TRVL 15537 strain of MAYV and monitored daily.
Adoptive transfer of splenocvtes from immunized IFNAR -/" to naive IFNAR -/" mice
Four- to six-week old IFNAR"7" mice were immunized twice at a two-week interval. One week after the second immunization, all mice were euthanized, and spleens were collected and processed as single-cell suspensions. The cell viability was examined by Trypan Blue dye exclusion staining using a CountessTM II Automated Cell Counter
(ThermoFisher). Adoptive transfer was performed by i.p. inoculation (2xl06 ΰβ1ΐ8/200μ1) into four- to six-week old naive IFNAR-/- mice. A group receiving splenocytes i.p. (200μ1) from the pVaxl immunized mice or PBS served as negative controls. All groups were challenged with 102 PFU of wild-type TRVL 15537 strain of MAYV and monitored daily.
Neutralization Assay
PRNT assay was carried out to detect and quantify the presence of neutralizing antibodies in the immunized mouse serum samples (Muthumani et al, 2016, J Infect Dis 214(3):369-78; Mallilankaraman et al, 2011 , PLoS Negl Trop Dis 5(l):e298; Wang et al, 2011 , J Virol 85(17):9249-52). Heat-inactivated (56°C, 30 minutes) immune sera were diluted serially and 150 μΐ of each diluted sample was mixed with an equal volume of 102 PFU of wild-type TRVL 15537 strain of MAYV, followed by incubation at 37°C for 1.5 hour for a virus-antibody neutralization reaction. 100 μΐ of the virus and serum mixture was then used to inoculate a monolayer of Vero cells in a 12-well plate followed by an incubation at 37°C for 1.5 hour with rocking every 15 minutes. Next, the supernatant was removed from each well, and a layer of 2% methyl cellulose was added. After further incubation at 37°C with 5% C02 for 3 days, the cells were fixed, stained with Crystal Violet (ThermoFisher), and plaque numbers were recorded. MAYV alone without serum incubation served as negative control. After washing the stained cells with distilled water and air-drying the plates, the number of foci per well were counted using a stereomicroscope. The percentage of infectivity was calculated as: % reduction in infection = {1 -(number of plaques from serum samples / number of plaques from negative control)} xlOO.
Macrophage infection of MAYV and Cell Viability Assay
Purified CD14+ human monocytes were obtained. Human monocyte-derived macrophages (MDM; lxl06/well) were cultured in a 6-well plate in Macrophage Base Medium DXF (PromoCell GmbH, Germany) supplemented with 60 ng/mL of granulocyte- macrophage colony stimulating factor (GM-CSF) recombinant protein (R&D Systems, USA). The culture was incubated without disturbance at 37°C with 5% CO2 for 3 days, and MDMs were washed once with PBS prior to infection. Cells were infected with the multiplicity of infection (MOI) of 0.01 with TRVL 15537 strain of MAYV that was preincubated for 1 hour at 37°C with either pVaxl immune sera or a 100-fold dilution of pooled day 35 immune sera from scMAYV-E vaccinated mice. The same media containing virus-pVaxl sera or virus scMAYV-E sera mixtures were added to washed MDMs in a 6-well plate that were then kept for 1 hour at 37°C with a rocking interval of 15 minutes. The supernatant was removed following incubation, and Macrophage Base Medium DXF (PromoCell GmbH, Germany) was added to each well and further incubated at 37°C with 5% CO2 for 48 hours. Uninfected and infected macrophages were stained with Live Cell Labeling Kit- Green Fluorescence- Cytopainter (Abeam, Cambridge, MA, USA) according to the manufacturer's instructions. Stained macrophages were imaged on a microscope (EVOS Cell Imaging Systems; Life Technologies) and % live cells (i.e., Labeling Dye Green+) were assessed by visual inspection of images from six different reviewers assessing the inhibited infection relative to base-line by 90%. A monolayer of Vero CCL-81 cells plated on 12-well plates were inoculated with 200 μΐ of supernatants from MAYV -infected MDMs that were previously pre-incubated MAYV with either pVaxl or scMAYV-E sera. After 36 hours of incubation, viability of the Vero CCL-81 cells was examined by Trypan Blue dye exclusion staining using a Countess TM II Automated Cell Counter (ThermoFisher). The assays were done in triplicates, and each dot represents the cell viability from a single well +/- SEM. The experiment was repeated twice.
Statistical analysis
All results are representative of those from at least two independent experiments with similar results. Graphs, standard curves, and pie charts were made using GraphPad Prism (version 4.0) software. IC50 values were calculated using a non-linear regression of the reciprocal of the serum dilution compared to the control. The survival data for mouse experiments were graphed using Kaplan-Meier survival curves. Two-tailed p values were calculated by log-rank (Mantel-Cox) test for nonparametric data using GraphPad Prism (version 4.0) software.
The results are now described.
Synthetic consensus Mavaro DNA vaccine development and characterization
Bioinformatics and synthetic DNA technologies were employed to create a novel DNA vaccine encoding a full-length MAYV envelope gene sequence comprised of the El, E2, and E3 glycoprotein domains as well as the 6K/TF polypeptides. The synthetic DNA insert was created by aligning full-length envelope genomic sequences from multiple MAYV strains deposited in the GenBank-NCBI (National Center for Biotechnology Information) database and determining the most common conserved amino acid at each position.
Consensus antigen sequences account for genetic variability that occurs over time in a sequence and thus mapped at the phylogenetic midpoint (Figure 1A). Studies show that synthetic consensus sequences can focus immune responses against conserved sites as well as broaden T cell immunity (Muthumani et al, 2016, NPJ Vaccines 1 : 16021, Duperret et al, 2018, Mol Ther 26(2):435-45). To improve the transcription and translation of the vaccine inserts, modifications to the insert sequences were made prior to cloning into the modified pVaxl vaccine expression vector including the addition of an immunoglobulin E (IgE) leader sequence to the N-terminus (Figure IB) along with codon and RNA optimization of the sequences (Muthumani et al, 2015, Sci Transl. Med. 7(301):301ral32). Reference models of the scMAYV-E antigen made using Discovery Studio 4.5. software indicate that its predicted structure matches that of a wild-type MAYV envelope with the fusion loop at the end of domain El tucked into a fold in domain E2 (Figure 1C-D), thus preserving important envelope functional sites. Expression of the scMAYV-E antigen was confirmed in vitro through western analyses of lysates from 293T cells transfected with vaccine (Figure IE).
Due to a paucity of commercially available reagents for evaluating anti-MAYV immune responses, a recombinant MAYV-E1 (rEl) protein was generated for use in the immunoassays (Figure 2A). The El glycoprotein is the immunodominant portion of MAYV envelope that is varied amongst alphaviruses, and the E2 region highly conserved; thus, the El domain was chosen for development over full-length envelope due to significant time and cost requirements needed to prepare the latter. The consensus MAYV-E1 domain sequence was obtained from the scMAYV-E consensus described above and cloned into the pET30A E. coli expression vector (Muthumani et al, 2016, NPJ Vaccines 1: 16021). The rEl protein was purified from transfected E. coli cultures using nickel column chromatography (Figure 2B), and a pan alphavirus monoclonal antibody (clone: G77L; ThermoFisher) was used to verify the final rEl product by western analyses (Figure 2C). Further confirmation of the identity of the purified protein was made using ELISA with sera collected from mice immunized with scMAYV-El or scMAYV-E DNA plasmids (Figure 2D). Based on this result, this recombinant protein was utilized for investigating MAYV-specific humoral immunogenicity .
scMAYV-E induces binding and neutralizing antibody responses in mice
The immunogenicity of the scMAYV-E vaccine was evaluated in C57BL/6 mice. Initially, groups of mice were immunized three times, two weeks apart, with 25 μg of either scMAYV-E or an pVaxl empty vector plasmid using EP-enhanced i.m. delivery (Fisher et al., 2017, Gene Ther 24(12):757-67). Immunized mice were bled on day 0 and one week after each injection to obtain sera, which were assayed for the presence of antibodies to MAYV envelope using ELISA with the rEl protein. The results show that all mice develop anti- MAYV antibodies after a single immunization, and the MAYV envelope-specific IgG responses were boosted by both a second and third immunization (Figure 3A). Multiple immunizations also enhanced the affinity of the vaccine-induced anti-MAYV responses as evidenced by increasing endpoint titers after the second immunization (Figure 3B). There is a comparable increase in IgGl, IgG2a, IgG2b, and IgG3 subtypes after the third immunization (Figure 3C). Both Vero-CCL81 (Figure 3D) and U-87 MG neuronal cells (Figure 3E) infected with the wild-type MAYV could be identified by indirect immunofluorescence assay using pooled day 35 sera from scMAYV-E immunized mice but not when using pooled day 35 pVaxl sera.
Studies on related alphaviruses including CHIKV have established anti-viral antibodies as a primary correlate of protection (Mallilankaraman et al, 2011, PLoS Negl Trop Dis 5(l):e298; Fox et al, 2016, J Immunol 197(11):4210-18; Fox et al, 2015, Cell 163(5): 1095-107). Next, it was evaluated whether the antibody response elicited by the scMAYV-E vaccine in mice could neutralize MAYV infection in vitro. A plaque reduction neutralization test (PRNT) performed on pooled day 35 sera from scMAYV-E immunized or pVaxl control mice found that antibodies in scMAYV-E vaccinated mice could neutralize MAYV infection of Vero-CCL81 cells with a high neutralizing titer (PRNT50=789.8). These results indicate that scMAYV-E induces robust, MAYV-specific humoral responses in mice that are capable of blocking MAYV infection in vitro (Figure 3F).
scMAYV-E immune sera protect human macrophages from MAYV infection-induced death
Multiple alphaviruses are known to infect macrophage cells, which are believed to play a role in alphavirus -induced arthritis (Herrero et al, 2013, Arthritis Rheum 65(10):2724-36; Haist et al., 2017, PLoS Pathog. 13(12):el006748). To assess the potential of scMAYV-E immune sera to protect against macrophage infection, an in vitro infection assay was performed. Addition of wild-type MAYV TRVL 15337 to human monocyte-derived macrophages (MDMs) decreased cell viability at 48 hours post infection (Figure 4A). Importantly, preincubation of MAYV infection with pooled immune sera from scMAYV-E immunized mice significantly increased the viability of MDMs whereas MDMs incubated with virus plus pVaxl sera demonstrated high levels of cell death. This was observed in all visual fields on a fluorescent microscope (Figure 4B) as well as by the Labelling Dye Green positive cells evaluated by six independent reviewers (Figure 4C). These results led to the conclusion that while MAYV was likely inducing cell death, the immune sera from scMAYV-E immunized mice can prevent this process from killing the cells. To further investigate this observation, Vero CCL-81 cells were cultured with supernatants from the infected MDM cultures described above for 36 hours. Vero cells grown in the presence of supernatant from MDMs incubated with MAYV+scMAYV-E immune sera had a cell viability over 60% when compared to a 40% cell viability of Vero cell cultured in the presence of supernatant from MDMs incubated with MAYV+pVaxl sera (Figure 4D). Taken together, these results suggest that scMAYV-E immune sera are capable of inhibiting viral entry into the target cells.
scMAYV-E induces potent antigen-specific cellular immune responses
Next, anti-MAYV cellular immunity was evaluated in splenocytes collected from the scMAYV-E immunized C57BL/6 mice mentioned previously. One week after the third immunization (day 35), pVaxl control and scMAYV-E immunized mice were euthanized, and bulk splenocytes were obtained for evaluation in ELISpot assay. Briefly, harvested splenocytes from mice were ex vivo stimulated with various peptide pools encompassing the full-length MAYV envelope protein (i.e., glycoprotein El, E2, and E3). The identity of each peptide pool is shown in Table 1. The antigen specific production of interferon gamma (IFN- γ) by the cells is reported as spot forming units (SFUs) per million cells. Mice immunized with scMAYV-E exhibit a robust cellular response to multiple peptide pools throughout the MAYV envelope glycoprotein domains. A similar strong cellular response to multiple MAYV peptide pools was also observed in a separate cohort of mice that were euthanized two weeks after a single immunization with the scMAYV-E vaccine (Figure 5A).
Table 1. Pe tide ools encom assin the scMAYV-E se uence.
Figure imgf000097_0001
To better define the dominant epitope(s) of scMAYV-E that elicit cellular responses in the C57BL/6 mouse model, an ELISpot mapping analysis was performed on bulk splenocytes from the mice that received three immunizations with scMAYV-E. Thirty-five matrix peptide pools encompassing the entire MAYV envelope protein, each comprised of individual 15-mer peptides that overlap by 9 amino acids, were created (Table. 1) and used to ex vivo stimulate splenocytes for the IFN-γ ELISpot assay as previously described. Several matrix pools from different regions of the MAYV envelope stimulated IFN-γ production by T cells in the bulk splenocytes, with peptide pools 7,13, 21, and 28 eliciting the highest responses (Figure 5B-C). Subsequent mapping analysis identified dominant epitopes within the MAYV El glycoprotein, 'GRSVIHFSTASAAPS' (Figure 5B) and within the MAYV- E3+E2 glycoproteins as 'LAKCPPGEVISVSFV (Figure 5C). The amino acid sequences of the dominant epitopes determined from the ELISpot mapping analysis were confirmed using the immune epitope database analysis resources tools (http://tools.iedb.org), substantiating the effective antigen processing of scMAYV-E vaccine in this strain of mice. scMAYV-E generates significant polyfunctionalitv in both CD4+ and CD8+ T cells
To further characterize the cellular response induced by the scMAYV-E vaccine, splenocytes collected from the C57BL/6 mice receiving three immunizations of scMAYV-E as described above were evaluated by polychromatic flow cytometry. A panel of fluorophore- tagged antibodies was created and used to characterize production of the activated-state cytokines such as IFN-γ tumor necrosis factor-a (TNF-a), and interleukin 2 (IL-2), by helper (CD4+) and cytotoxic (CD8+) T cells present in bulk splenocytes from pVaxl or scMAYV-E immunized mice after ex vivo stimulation with all peptides comprising MAYV full-length envelope. Both CD4+ and CD8+ T cells isolated only from scMAYV-E vaccinated mice were able to produce each cytokine upon stimulation with MAYV peptides (Figure 6A-B).
Vaccination also induced a large polyfunctional response in both T cell subsets (i.e., production of multiple activated-state cytokines) (Figure 6C). Combined with the ELISpot results, these results show that the scMAYV-E DNA vaccine both induces cellular immunity to MAYV and provides polyfunctionality of the antigen specific T cells.
scMAYV-E induced immunity protects mice from MAYV disease
Next, it was evaluated whether these MAYV-specific immune responses could protect against MAYV infection or disease in a challenge model. Previous studies showed that older immunocompetent mouse models do not exhibit arthritogenic signs of disease upon alphavirus challenge (Wang et al., 2011, J Virol 85(17):9249-52; Gorchakov et al, 2012, J Virol 86(11):6084-96). Therefore the interferon α/β receptor knockout mouse (IFNAR"/_; A129) model was chosen, which has a defective innate immune response to pathogens. A dose of 102 PFU of MAYV administered i.p. produced measurable clinical signs of disease including weight loss, foot swelling, and death.
First, the cellular and humoral immunogenicity of scMAYV-E vaccinated IFNAR /_ mice were evaluated as previously described with C67BL/6 mice to confirm that they would mount a similar adaptive immune response. IFN-γ ELISpot responses (Figure 7A) and total IgG binding antibody levels (Figure 7B) were very comparable to those observed in the C56BL/6 mice. For the challenge studies, cohorts of 10 four- to six-week old IFNAR"7" mice were similarly immunized twice, two weeks apart, with either 25 μg scMAYV-E vaccine or pVaxl empty vector plasmid as a control. Animals were challenged on day 21, one week after the second immunization, with 102 PFU of wild-type MAYV and were checked daily for 8 days for clinical signs of infection. All 556 mice receiving pVaxl empty vector plasmid exhibited significant and progressive weight loss (Figure 7C). In contrast, mice vaccinated with scMAYV-E initially had minor weight loss over the first 4 days of challenge but exhibited slight weight gain after day 5 post challenge (Figure 7C). Importantly, 100% of vaccinated mice survived the challenge, while all control mice met euthanasia criteria by 6-7 days post challenge (Figure 7D). They also had significant footpad swelling at day 6 post challenge (Fig 7E-F). Quantification of MAYV in sera from both groups of mice collected 6 days post challenge showed that scMAYV-E vaccinated mice had a significant reduction in circulating virus compared to pVaxl injected mice (Figure 7G). Combined, these data demonstrate that immune responses induced by the scMAYV-E vaccine provide protection from morbidity and viral load following MAYV challenge in this murine challenge model. scMAYV-E induced humoral responses are required to confer protection from viral challenge
The relative contribution of the scMAYV-E vaccine induced humoral and cellular responses was evaluated in an in vivo passive transfer MAYV challenge model. In this investigation, a cohort of 6 four- to six-week-old IFNAR _ ~ mice were immunized twice at a two-week interval with 25 μg of scMAYV-E or pVaxl. One week following the final immunization, the mice were euthanized and blood and bulk splenocytes were collected from each animal. Sera and splenocytes from each group were pooled. Cohorts of 6 naive, four- to six-week old IFNAR^ mice were injected with either PBS, 200 μΐ of pooled immune sera, or 2xl06 pooled splenocytes containing T cells, and subsequently challenged with 102 PFU of MAYV. Challenged mice were monitored for up to 8 days for clinical signs of disease. All mice receiving PBS prior to challenge progressively lost weight and were eventually euthanized due to severe disease as expected. Adoptive transfer of T cells from immunized mice provided some protection from weight loss (Figure 8A) and partial protection from disease (Figure 8B). Significantly, 100% of mice receiving immune sera from vaccinated mice exhibited no weight loss (Figure 8A) and all survived the challenge (Figure 8B).
Combined, these data establish the scMAYV-E induced humoral response as the main driver of its protective efficacy in this murine MAYV challenge model.
Discussion
Mayaro virus is an emerging infectious disease agent endemic in tropical regions of South America, but recent evidence suggests that its range may be expanding into Central America and island nations of the Caribbean Sea (Rodriguez-Morales et al, 2017, Travel Med Infect Dis 15:72-3, Mackay et al, 2016, Microbes Infect 18(12):724-34). The virus causes an acute febrile illness with symptoms including rash, headache, nausea, and diarrhea that can turn into a debilitating, long-term arthralgia in some patients after acute infection has cleared (El-Bacha et al., 2004, Mol Cell Biochem 266(1-2): 191-8; Lednicky et al, 2016, Emerg Infect Dis 22(l l):2000-2). There are currently no approved vaccines or therapeutics to combat MAYV disease and spread. The data presented herein demonstrates the generation and immunogenicity of a synthetic, enhanced DNA vaccine encoding a novel consensus- designed sequence of the MAYV envelope protein. The vaccine encoding MAYV envelope antigen sequence was designed to focus on conserved amino acids of the full-length envelope sequences to improve the specificity of the anti-MAYV immune responses induced by the vaccine. Immunization of mice with scMAYV-E using enhanced EP delivery induced robust, MAYV-specific humoral and cellular responses. Importantly, these responses can neutralize MAYV infection in vitro and can fully protect susceptible mice from morbidity and mortality following MAYV challenge. The results show that scMAYV-E is a highly immunogenic vaccine candidate that warrants further testing in additional systems and animal models for developing countermeasures against MAYV infection and diseases.
The precise correlates of protection for MAYV have not been defined. A recent one- year longitudinal study of confirmed MAYV -infected individuals in Peru found that infection elicited robust anti-viral immune responses including strong neutralizing antibody responses and promoted secretion of pro-inflammatory immune cytokines including IL-13, IL-7, and VEGF (Santiago et al, 2015, PLoS Negl Trop Dis 9(10):e0004104). They also report that the strong neutralizing antibody response was not sufficient to prevent long-term negative outcomes of MAYV infection; however, these responses developed post infection. Studies on related alphaviruses, including CHIKV, strongly suggest that a potent, neutralizing antibody response primarily mediates protection from infection, but non-neutralizing antibodies may contribute to protection as well through alternative effector functions (Fox et al, 2015, Cell 163(5): 1095-107). Post infection, there is likely an important role for cellular immunity that may complement the humoral responses.
The scMAYV-E DNA vaccine elicits both humoral and cellular responses against MAYV, and thus might be an important tool to provide comprehensive protection from MAYV infection and disease. Antibodies to MAYV are generated after the initial priming immunization with scMAYV-E, and these responses increase after both one and two boosts in terms of binding capacity and affinity to rEl . Immune sera from vaccinated mice was able to detect full-length MAYV envelope in scMAYV-E transfected cells as well as MAYV infected cells. scMAYV-E vaccination of mice was able to induce neutralizing antibodies that can block viral entry and inhibit cell death induced by MAYV infection in human MDMs. Passive transfer of immune sera from scMAYV-E vaccinated mice to susceptible naive IFNAR_/" mice prior to MAYV challenge completely protected animals from illness, further confirming the importance of a strong humoral response for conferring protection from alphavirus infection.
Although the anti-MAYV T cell response appears less important for an immediate protection against MAYV infection, it may still be essential for the prevention of chronic disease by eliminating virus -infected cells. The cellular components induced by the scMAYV-E DNA vaccine target multiple epitopes along the full-length MAYV envelope glycoprotein. The strongest cellular responses were directed to epitopes in the E3+E2 glycoprotein domains of envelope, and the responses to epitopes in the El glycoprotein were less robust. The ELISpot mapping studies conducted here identified two immunodominant epitopes, 'LAKCPPGEVISVSFV in the E3+E2 domain and 'GRSVIHFSTASAAPS' within the El glycoprotein, providing important and useful reagents for studies of the T cell immune response in this haplotype. Interestingly, passive transfer of splenocytes from scMAYV-E immunized mice to susceptible naive IFNAR 7" mice prior to MAYV challenge provided partial protection from weight loss and clinical symptoms of MAYV disease, suggesting that MAYV-specific cellular responses do contribute to protection. In this adoptive transfer experiment, MAYV-specific T cells were not purified or enriched from bulk splenocytes prior to transfer, thus it is possible that the partial protection observed here could be enhanced with a larger dose of antigen-specific T cells.
The immunogenicity of the scMAYV-E DNA vaccine mirrors what were observed in a previous DNA vaccine candidate targeting chikungunya virus (CHIKV-E) which encodes a synthetic consensus sequence of the full-length chikungunya envelope protein
(Mallilankaraman et al, 2011, PLoS Negl Trop Dis 5(l):e298). The CHIKV-E vaccine was similarly able to generate humoral and cellular responses directed towards the CHIKV envelope protein, and these responses could protect mice from morbidity and mortality following a CHIKV challenge (Mallilankaraman et al, 2011, PLoS Negl Trop Dis
5(l):e298).
The synthetic DNA vaccines have some practical advantages for development including simplicity of production and stability at warmer temperatures, likely reducing the requirement for a cold chain. They are non-live and non-replicating and do not integrate, thus providing conceptual safety advantages as well. Since DNA vaccine vectors do not induce anti-vector serology, they can be administered multiple times with no loss of potency and without interfering with other vaccine protocols. Such logistical and safety advantages warrant further studies of this vaccine approach, especially pertaining to diseases prevalent in tropical settings like MAYV. scMAYV-E is the third vaccine candidate for MAYV developed. The first vaccine was an inactivated Mayaro virus, and the second vaccine reported was a live-attenuated MAYV virus (Robinson et al, 1976, Mil Med 141(3): 163-6; Weise et al, 2014, PLoS Negl Trop Dis 8(8):e2969). Both prior vaccines were shown to induce anti-MAYV humoral responses that could protect mice from MAYV challenge, but neither study reported on the induction of cFwellular responses to MAYV. The synthetic scMAYV-E DNA vaccine described here generates MAYV-specific humoral and cellular responses without replication, which is likely important for immune-challenged, young, pregnant, and elderly populations of potential travelers and residents in endemic areas in need of vaccine-induced immune protection.
Example 2
Consensus MAYV-ENV DNA vaccines are rationally designed based on alphavirus phylogenetics. Antigen-specific cellular and humoral responses to Env-DNA vaccines are tested in vivo. Antibodies possessing functional activity undergo epitope mapping against MAYV Env proteins using overlapping peptide libraries. These analyses include the measurement of the cellular immunogenicity of DNA vaccine constructs in mice and specific memory responses.
Mayaro virus (MAYV) is a member of the Family Togaviridae .( alphavirus) Genetically its divided into two genotypes, "D" (widely Dispersed), "N" (New) and "L" (Limited).
Synthetic Consensus Mayaro- Envelope, El, E2+E3 and Capsid were developed (Figure 1A, Figure 9)
Characterization of MAYV -Vaccine by Western blot analysis demonstrated that the vaccines are well expressed in vitro. The immunoblot indicates that the MAYV -Env sera recognized Envelope protein, confirming the specificity of the envelope protein expression as well as optimized DNA vaccines induce very strong humoral responses and was shown to be immunogenic (Figure 10). An immunofluorescence assay demonstrated that IgG generated from MAYV-Env administered mice was capable of binding to MAYV-infected Vero cells (Figure 11). The Immune profile of El, E2 & E3 appear particularly relevant for vaccine development (Figure 12).
Immunization studies of the MAYV vaccine in mice were carried out. C57/BL6 mice were DNA primed at day 0, and received a boost at week day 14, & 28. Immune analysis was carried out one week post DNA 3rd immunization. Mice (4animals/group) received one of: pVAX-1; pVAX-1 MAYV -El ; pVAX-1 MAYV-E3:E2; pVAX-1 MAYV-ENV or pVAX-1 MAYV-Capsid (Figure 13).
A study of the MAYV -vaccines induces high levels of seroconversion in mice.
MAYV-antibodies react to MAYV- Env or MAYV-Capsid antigen appear specific and react in western blot analysis. 100% Seroconversion is observed after a single immunization of MAYV-Env vaccine. Potent cellular immune responses are induced and dominant epitopes for each vaccine were characterized. Induction of polyfunctionality is also induced driving CD3+/CD4+ and CD3+/CD8+ T cells (Figures 5, 7, 14-18).
Experiments were performed to examine the ability of immunization with MAYV- Env vaccine to protect against MAYV challenge. A129 mice (n=10/group) which are lacking the type I interferon a/b receptor and thus prone to MAYV infection were immunized twice with 25 μg of control pVaxl or MAYV-Env vaccine at 2-week intervals into the quadriceps muscles by i.m injection with electroporation. Animals were challenged on day 21, one week after the second immunization with 1 χ 102 plaque-forming units (PFU) of MAYV virus (VR1277 viral strain) and were checked daily for clinical signs of infection. It was observed that 100% of MAYV-Env immunized mice were protected against infection (Figure 7 A), and that 100% of MAYV-Env immunized mice displayed no signs of weight loss (Figure 7B).
In conclusion, the data presented herein demonstrates that the MAYV novel consensus DNA vaccine can be effectively delivered using in vivo EP, which results in the activation of a broad immune response (both cellular and humoral responses).
Example 3
Anti-Mayaro virus (MAYV) "DNA monoclonal antibodies" (DMAb) can be generated via intramuscular electroporation of plasmid DNA.
As described herein, an optimized, synthetic DNA vector platform (DMAb) to deliver encoded mAb heavy and light chains directly into skeletal muscle was designed, employing the cells as biological factories that will secrete a functional antibody at detectable levels in systemic circulation. DMAbs encoding anti-MAYV mAbs that target the MAYV Capsid or Envelope proteins are developed. DMAb nucleotide and amino acid optimized before insertion into a highly-optimized plasmid backbone. A plasmid capable of producing full- length, anti-MAYV mAbs was designed using coding sequences for the variable heavy (VH) and light (VL) immunoglobulin (Ig) chains procured from DNA immunized hybridoma (Figure 14).
Quantification of total human IgG levels were evaluated by ELISA of supernatants from cells transfected with anti-MAYV-DMAb plasmids. Plasmids are capable of producing detectable human anti-MAYV-Env-IgGl in serum on post DNA immunization. Results confirm plasmids are capable of directing IgG production (Figure 15).
Administration of one or more nucleic acid molecules encoding anti-MAYV DMAbs in a subject via intramuscular (IM) or intradermal (ID) injection, followed by in vivo electroporation (EP) produces MAYV DMAbs detectable in serum for >3months, with Cmax serum levels comparable to protein-delivered human IgGl . The muscle expresses, assembles, and secretes functional mAb in vivo at levels detectable in systemic circulation. In the field, MAYV DMAbs could be administered in advance during a possible MAYV outbreak.
MAYV DMAbs provide preventative protection against lethal MAYV challenge and offer long-lasting preventative protection against MAYV infection. Further, MAYV DMAbs protect against MAYV-related diseases or disorders including weight loss and arthropathies.
Example 4
Vaccination is known to exhibit a lag phase before generation of immunity; thus, there is a gap of time during infection before an immune response is in effect. The following provides specific novel approaches that utilizes the benefit of vaccines and the native immune response along with a rapid generation of effective immunity using the DNA synthetic antibodies or dMabs.
An antibody -based prophylaxis/therapy entailing the electroporation mediated delivery of synthetic plasmids, encoding biologically active anti-Mayaro virus (MAYV) mAb (designated dMAb), was designed and evaluated for anti-viral efficacy as well as for the ability to overcome shortcomings inherent with conventional active vaccination by a novel passive immune-based strategy. One intramuscular injection of the MAYV-dMAb produces antibodies in vivo more rapidly than active vaccination with a MAYV -DNA vaccine. This dMAb neutralizes diverse MAYV clinical isolates and protected mice from viral challenge. Combinations of both afford rapid as well as long-lived protection.
Thus, it is disclosed herein that a DNA based dMAb strategy induces rapid protection against an emerging viral infection, which can be combined with DNA vaccination providing a uniquely both short term and long-term protection against this emerging infectious disease. These studies have implications for pathogen treatment and control strategies.
Development of MAYV-DNA vaccines and anti-MAYV dMABs are described in Examples 2 and 3, respectively.
One potential issue of combining antibody delivery with vaccination approaches is that the antibodies can neutralize many traditional vaccines and thus are incompatible platforms. The co-administration of anti-MAYV dMAb and MAYV antigen-DNA results in anti-MAYV dMAb mediated rapid protection from infection and death after MAYV challenge and strong T-cell responses mediated by MAYV antigen-DNA. This demonstrates the lack of interference of these approaches. Accordingly, both anti-MAYV dMAb and MAYV-DNA vaccines can be administered simultaneously without reciprocal interference, providing immediate and long-lived protection via systemic humoral and cellular immunity.
Subjects administered anti-MAYV dMAbs are fully protected from viral challenge shortly after administration, whereas subjects do not survive infection following a single immunization with MAYV-DNA vaccine, owing presumably to an insufficient time to mount protective immunity. However, MAYV-DNA provides complete protection after an immunization regimen followed by challenge at later time points. A similar level of protection occurs in subjects administered a single dose of anti-MAYV dMAbs, although protection wanes over time. Notably, the co-delivery of anti-MAYV dMAbs and MAYV- DNA produces rapid and persistent humoral and cellular immunity, suggesting that a combination approach can have additive or synergistic effects. Importantly, co-delivery of anti-MAYV dMAbs and MAYV-DNA are not antagonistic in terms of the development of short- or long-term protective immune responses.
It is understood that the foregoing detailed description and accompanying examples are merely illustrative and are not to be taken as limitations upon the scope of the invention, which is defined solely by the appended claims and their equivalents.
Various changes and modifications to the disclosed embodiments, will be apparent to those skilled in the art. Such changes and modifications, including without limitation those relating to the chemical structures, substituents, derivatives, intermediates, syntheses, compositions, formulations, or methods of use of the invention, may be made without departing from the spirit and scope thereof.

Claims

CLAIMS What is claimed is:
1. An immunological composition comprising a nucleic acid molecule comprising a nucleotide sequence encoding a Mayaro virus (MAYV) antigen.
2. The immunological composition of claim 1 , wherein the MAYV antigen comprises an antigen selected from the group consisting of MAYV-E1, MAYV-E2, MA YVES, MAYV-6K and MAYV-Capsid (CA).
3. The immunological composition of claim 2, wherein MAYV-CA comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 104, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104, a fragment of SEQ ID NO: 104 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104.
4. The immunological composition of claim 3, wherein the nucleic acid molecule encoding MAYV-CA comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 105, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105, a fragment of SEQ ID NO: 105 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105.
5. The immunological composition of claim 2, wherein MAYV-E1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 106, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106, a fragment of SEQ ID NO: 106 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106.
6. The immunological composition of claim 5, wherein the nucleic acid molecule encoding MAYV-E1 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 107, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107, a fragment of SEQ ID NO: 107 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107.
7. The immunological composition of claim 2, wherein MAYV-E2 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 108, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108, a fragment of SEQ ID NO: 108 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108.
8. The immunological composition of claim 7, wherein the nucleic acid molecule encoding MAYV-E2 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 109, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109, a fragment of SEQ ID NO: 109 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109.
9. The immunological composition of claim 2, wherein MAYV-E3 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 110, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110, a fragment of SEQ ID NO: 110 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110.
10. The immunological composition of claim 9, wherein the nucleic acid molecule encoding MAYV-E3 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 111, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111, a fragment of SEQ ID NO: 111 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111.
11. The immunological composition of claim 2, wherein MAYV-6K comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 112, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112, a fragment of SEQ ID NO: 112 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112.
12. The immunological composition of claim 11, wherein the nucleic acid molecule encoding MAYV-6K comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 10, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 10, a fragment of SEQ ID NO: 113 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 113.
13. The immunological composition of claim 2, wherein the MAYV antigen comprises MAYV-E2 and MAYV-E3.
14. The immunological composition of claim 14, wherein the nucleic acid molecule encoding MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 114, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114, a fragment of SEQ ID NO: 114 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114.
15. The immunological composition of claim 14, wherein the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 115, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115, a fragment of SEQ ID NO: 115 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115.
16. The immunological composition of claim 2, wherein the MAYV antigen comprises MAYV-E1, MAYV-E2, MAYV-E3, and MAYV-6K.
17. The immunological composition of claim 16, wherein the MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: l 16, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116, a fragment of SEQ ID NO: 116 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116.
18. The immunological composition of claim 17, wherein the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 117, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117, a fragment of SEQ ID NO: 117 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117.
19. The immunological composition of claim 1 further comprising nucleic acid sequences that encode one or more proteins selected from the group consisting of: IL-12, IL- 15 and IL-28.
20. The immunological composition of claim 1, wherein the MAYV antigen is linked to an IgE leader sequence.
21. A method of inducing an immune response against a Mayaro virus, the method comprising administering the composition of any of claims 1-21 to an individual in an amount effective to induce an immune response in said individual.
22. A method of treating an individual who has been diagnosed with Mayaro virus comprising administering a therapeutically effective amount of the composition of any of claims 1-21 to an individual.
23. A method of preventing Mayaro virus infection in an individual comprising administering a prophylactically effective amount of the composition of any of claims 1-21 to an individual.
24. A nucleic acid molecule comprising one or more nucleotide sequences selected from the group consisting of: SEQ ID NO: 105, SEQ ID NO: 107, SEQ ID NO: 109, SEQ ID NO: 111 SEQ ID NO: 113, SEQ ID NO: 115, SEQ ID NO: 117, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 113, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115, and a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117.
25. The nucleic acid molecule of claim 24, wherein the nucleotide sequence comprises one or more plasmids.
26. A protein comprising one or more amino acid sequences selected from the group consisting of: SEQ ID NO: 104, SEQ ID NO: 106, SEQ ID NO: 108, SEQ ID NO: 110, SEQ ID NO: 112, SEQ ID NO: 114, SEQ ID NO: 116, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 115, and an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116.
27. A nucleic acid molecule encoding one or more synthetic antibodies, wherein the nucleic acid molecule comprises at least one selected from the group consisting of
a) a nucleotide sequence encoding an anti-Mayaro Virus (MAYV) synthetic antibody;
b) a nucleotide sequence encoding a fragment of an anti- MAYV synthetic antibody;
28. The nucleic acid molecule of claim 27, wherein the one or more synthetic antibodies binds to a MAYV antigen.
29. The nucleic acid molecule of claim 28, wherein the antigen is selected from the group consisting of MAYV-Capsid, MAYV-E1, MAYV-E2, MAYV-E3, MAYV-6K, and any combination thereof.
30. The nucleic acid molecule of claim 28, wherein the antigen comprises an amino acid sequence selected from EGHYNWHYGAVQYTG (SEQ ID NO: 101),
GRSVIHFSTASAAPS (SEQ ID NO: 102) and LAKCPPGEVISVSFV (SEQ ID NO: 103).
31. The nucleic acid molecule of claim 27, further comprising a nucleotide sequence encoding a cleavage domain.
32. The nucleic acid molecule of claim 27, comprising a nucleotide sequence encoding an anti- MAYV antibody.
33. The nucleic acid molecule of claim 32, comprising a nucleotide sequence encoding an amino acid sequence at least 90% homologous to SEQ ID NO: 1 or 3.
34. The nucleic acid molecule of claim 32, comprising a nucleotide sequence at least 90% homologous to SEQ ID NO:2 or 4.
35. The nucleic acid molecule of claim 27, wherein the nucleic acid molecule comprises a sequence encoding an anti- MAYV heavy chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16.
36. The nucleic acid molecule of claim 27, wherein the nucleic acid molecule comprises a sequence encoding an anti- MAYV light chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
37. The nucleic acid molecule of claim 27, wherein the nucleotide sequence encodes a leader sequence.
38. The nucleic acid molecule of any one of claims 27-37, wherein the nucleic acid molecule comprises an expression vector.
39. A composition comprising the nucleic acid molecule of any one of claims 27-
38.
40. The composition of claim 39, further comprising a pharmaceutically acceptable excipient.
41. An anti-MAYV monoclonal antibody comprising a heavy chain and a light chain, wherein the heavy chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16 and the light chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
42. A method of preventing or treating a disease in a subject, the method comprising administering to the subject the nucleic acid molecule of any of claims 27-37, a composition of any of claims 39-40 or the monoclonal antibody of claim 41.
43. The method of claim 42, wherein the disease is a Mayaro virus infection
44. A composition comprising:
a) a first nucleic acid sequence wherein the nucleic acid sequence encodes a Mayaro Virus (MAYV) antigen; and
b) a second nucleic acid sequence encoding one or more anti-MAYV synthetic antibodies or fragments thereof or one or more anti-MAYV monoclonal antibodies.
45. The composition of claim 44, wherein the MAYV antigen comprises an antigen selected from the group consisting of MAYV -El, MAYV-E2, MAYV-E3, MAYV-6K and MAYV-Capsid (CA).
46. The composition of claim 45, wherein MAYV-CA comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 104, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104, a fragment of SEQ ID NO: 104 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 104.
47. The composition of claim 46, wherein the nucleic acid molecule encoding MAYV-CA comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 105, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105, a fragment of SEQ ID NO: 105 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 105.
48. The composition of claim 45, wherein MAYV-E1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 106, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106, a fragment of SEQ ID NO: 106 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 106.
49. The composition of claim 48, wherein the nucleic acid molecule encoding MAYV -El comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 107, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107, a fragment of SEQ ID NO: 107 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 107.
50. The composition of claim 45, wherein MAYV-E2 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 108, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108, a fragment of SEQ ID NO: 108 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 108.
51. The composition of claim 50, wherein the nucleic acid molecule encoding MAYV-E2 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 109, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109, a fragment of SEQ ID NO: 109 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 109.
52. The composition of claim 45, wherein MAYV-E3 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 110, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110, a fragment of SEQ ID NO: 110 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 110.
53. The composition of claim 52, wherein the nucleic acid molecule encoding MAYV-E3 comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 111, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111, a fragment of SEQ ID NO: 111 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 111.
54. The composition of claim 45, wherein MAYV-6K comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 112, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112, a fragment of SEQ ID NO: 112 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 112.
55. The composition of claim 54, wherein the nucleic acid molecule encoding MAYV-6K comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 10, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 10, a fragment of SEQ ID NO: 113 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 113.
56. The composition of claim 45, wherein the MAYV antigen comprises MAYV-E2 and MAYV-E3.
57. The composition of claim 56, wherein the MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 114, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114, a fragment of SEQ ID NO: 114 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 114.
58. The composition of claim 57, wherein the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 115, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115, a fragment of SEQ ID NO: 115 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 115.
59. The composition of claim 45, wherein the MAYV antigen comprises MAYV-E1, MAYV-E2, MAYV-E3, and MAYV-6K.
60. The composition of claim 59, wherein the MAYV antigen comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 116, an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116, a fragment of SEQ ID NO: 116 and a fragment of an amino acid sequence that is 90% identical or greater to SEQ ID NO: 116.
61. The composition of claim 60, wherein the nucleic acid molecule encoding MAYV antigen comprises nucleotide sequence selected from the group consisting of: SEQ ID NO: 117, a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117, a fragment of SEQ ID NO: 117 and a fragment of a nucleotide sequence that is 90% identical or greater to SEQ ID NO: 117.
62. The composition of claim 44, wherein the composition further comprises a nucleic acid sequence further comprising a nucleic acid sequences that encode one or more proteins selected from the group consisting of: IL-12, IL-15 and IL-28.
63. The composition of claim 44, wherein the MAYV antigen is linked to an IgE leader sequence.
64. The composition of claim 44, wherein the one or more anti-MAYV synthetic antibodies binds to a MAYV antigen.
65. The composition of claim 64, wherein the MAYV antigen is selected from the group consisting of MAYV-Capsid, MAYV -El, MAYV-E2, MAYV-E3, MAYV-6K, and any combination thereof.
66. The composition of claim 64, wherein the MAYV antigen comprises an amino acid sequence selected from EGHYNWHYGAVQYTG (SEQ ID NO: 101),
GRSVIHFSTASAAPS (SEQ ID NO: 102) and LAKCPPGEVISVSFV (SEQ ID NO: 103).
67. The composition of claim 44, wherein the second nucleic acid sequence further comprising a nucleotide sequence encoding a cleavage domain.
68. The composition of claim 44, wherein the second nucleic acid sequence encodes an anti- MAYV antibody.
I l l
69. The composition of claim 68, wherein the second nucleic acid sequence comprises a nucleotide sequence encoding an amino acid sequence at least 90% homologous to SEQ ID NO: l or 3.
70. The composition of claim 68, wherein the second nucleic acid sequence comprises a nucleotide sequence at least 90% homologous to SEQ ID NO:2 or 4.
71. The composition of claim 44, wherein the wherein the second nucleic acid sequence comprises a nucleotide sequence encoding an anti- MAYV heavy chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16.
72. The composition of claim 44, wherein the wherein the second nucleic acid sequence comprises a sequence encoding an anti- MAYV light chain comprising an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
73. The composition of claim 44, wherein the second nucleic acid sequence comprises sequence encodes a leader sequence.
74. The composition of claim 44, wherein the one or more anti-MAYV monoclonal antibodies comprises a heavy chain and a light chain, wherein the heavy chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 5-16 and the light chain comprises an amino acid sequence at least 90% homologous to one of SEQ ID NOs: 17-28.
75. A method of inducing an immune response comprising administering the composition of any one of claims 1 -74 to an individual in an amount effective to induce an immune response in said individual.
76. The method of claim 75, wherein the immune response is an anti-MAYV immune response.
77. The method of claim 75, wherein the immune response is persistent.
78. The method of claim 75, wherein the immune response is immediate.
79. The method of claim 75, wherein the immune response is systemic.
80. A method of preventing or treating a disease in a subject, the method comprising administering to the subject the composition of any of claims 44-74.
81. The method of claim 80, wherein the disease is a Mayaro virus infection.
PCT/US2018/055572 2017-10-12 2018-10-12 Mayaro virus consensus antigens, dna antibody constructs for use against mayaro virus, and combinations thereof WO2019075300A2 (en)

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