WO2017106753A1 - Assay-ready recombinant cells transiently overexpressing genes encoding drug transporter proteins and/or drug metabolizing enzymes - Google Patents

Assay-ready recombinant cells transiently overexpressing genes encoding drug transporter proteins and/or drug metabolizing enzymes Download PDF

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Publication number
WO2017106753A1
WO2017106753A1 PCT/US2016/067330 US2016067330W WO2017106753A1 WO 2017106753 A1 WO2017106753 A1 WO 2017106753A1 US 2016067330 W US2016067330 W US 2016067330W WO 2017106753 A1 WO2017106753 A1 WO 2017106753A1
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cells
recombinant
cryopreservation
drug
transporter protein
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PCT/US2016/067330
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French (fr)
Inventor
Na Li
Christopher Jerome PATTEN
Jie Wang
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Corning Incorporated
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Priority claimed from US14/972,012 external-priority patent/US9822160B2/en
Priority claimed from US15/269,045 external-priority patent/US20170067909A1/en
Application filed by Corning Incorporated filed Critical Corning Incorporated
Publication of WO2017106753A1 publication Critical patent/WO2017106753A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/705Assays involving receptors, cell surface antigens or cell surface determinants
    • G01N2333/72Assays involving receptors, cell surface antigens or cell surface determinants for hormones
    • G01N2333/726G protein coupled receptor, e.g. TSHR-thyrotropin-receptor, LH/hCG receptor, FSH

Definitions

  • the present disclosure relates to assay-ready preparations of recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein and/or a drug metabolizing enzyme, to processes of preparing cryopreserved, transiently transfected recombinant cells, and to suspension assays for assessing activity of drug transporter proteins and/or a drug metabolizing enzymes of recombinant cells.
  • Drug development is a costly and time consuming process of identifying, characterizing, and proving the safety and efficacy of drug candidates.
  • drug candidates must satisfy certain safety and efficacy criteria established by government agencies, such as, e.g., the U.S. Food and Drug Administration and European Medicines Agency, to market and sell new drugs.
  • assays are conducted to screen drug candidates to determine whether they have an effect on drug transporter proteins and/or drug metabolizing enzymes (such as, e.g., whether the drug candidates are substrates or inhibitors thereof).
  • drug transporter proteins and/or drug metabolizing enzymes have an established role in the absorption, distribution, metabolism, and/or elimination of drugs.
  • drug candidates (or metabolites of drug candidates) that significantly affect drug transporter proteins and/or drug metabolizing enzymes may also produce undesirable toxicity and/or drug-drug interactions, reducing the safety profile thereof.
  • OATPIBI drug transporter organic anion transporting polypeptide 1B1
  • cryopreserved cell lines transiently expressing a gene encoding a drug transporter protein and/or drug metabolizing enzyme are available for drug screening assays, such as, e.g., Corning® Transporto CellsTM available from Corning Life Sciences (Bedford, MA)
  • such cryopreserved recombinant cells are not assay-ready. Rather, such cryopreserved recombinant cells require users to thaw, plate, and culture the recombinant cells prior to performing a drug screening assay. Thawing, plating, and culturing the recombinant cells may take a user at least 24 hours to complete, increasing both the cost and time required to perform critical drug screening assays.
  • a recombinant cell including one or more transiently transfected overexpressed genes encoding a drug transporter protein is disclosed.
  • the recombinant cell is cryopreserved and activity of the drug transporter protein is detectable in a population of the recombinant cells prior to cryopreservation at an uptake ratio of at least 5.
  • a process of preparing cryopreserved transiently transfected recombinant cells includes transiently transfecting cells with one or more genes encoding a drug transporter protein to provide the transiently transfected recombinant cells, and cryopreserving the transiently transfected recombinant cells within 48 hours of transfection.
  • a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein at a detectable level prior to cryopreserving the transiently transfected recombinant cells.
  • the detectable level prior to cryopreserving is an uptake ratio of at least 5.
  • FIG. 1 is a graph of the percentage of viable cells from cell stock, cells after electroporation (hereinafter, "EP”) and cells after thaw from cryopreservation for FreeStyleTM 293-F (hereinafter, "FS293”) cells and 293-F cells grown in suspension.
  • EP electroporation
  • FS293 FreeStyleTM 293-F
  • FIG. 2 are images of transfected cells 4 hrs (A), 24 hrs (B) and 48 hrs (C) after plating following thaw from cryopreservation.
  • FIG. 3 are images of 293-F cells transfected with OATPlBl expression plasmid plated at (A) 0.4 x 106 viable cells per well and (B) 0.2 x 106 viable cells per well in 24- well poly-D-lysine coated plates and cultured in plating media at 24 hrs post-plating (following thaw from cryopreservation).
  • FIG. 4 are images of 293-F cells transfected with MATE1, MATE2K OATP1B3, long isoform OAT1 (full length cDNA with 563 amino acids; hereinafter, "OATl long”), short isoform OATl (missing 13 amino acid at C-terminus 522-534, with 550 amino acids; hereinafter, "OATl short”), OAT3, and pCMV vector plated at 0.4 x 106 cells per well in 24- well poly-D-lysine coated plates at 24 hrs post-plating (following thaw from cryopreservation).
  • FIG. 5 are fluorescence images of adhered HEK293 cells transfected with 50 ⁇ g/ml, 100 ⁇ g/ml or 200 ⁇ g/ml green fluorescent protein (GFP) 24 hrs (A) and 48 hrs (B) following EP.
  • GFP green fluorescent protein
  • FIG. 6 is a graph of the percentage of viable cells following EP of adhered HEK293 cells using varying amounts of DNA.
  • FIG. 7A is a graph of estradiol-17P-glucuronide (i.e., E17PG) uptake activity following various incubation times in adhered HEK293 cells transfected with varying amounts of DNA (i.e., 0, 50 ⁇ g/ml, 100 ⁇ g/ml, 200 ⁇ g/ml or 400 ⁇ g/ml OATP2/OATP1B1) at 48 hrs post EP.
  • E17PG estradiol-17P-glucuronide
  • FIG. 7B is a graph of estradiol-17P-glucuronide (i.e., E17PG) uptake activity following various incubation times in adhered HEK293 cells transfected with varying amounts of DNA (i.e., 0, 50 ⁇ g/ml, 100 ⁇ g/ml, 200 ⁇ g/ml or 400 ⁇ g/ml OATP2/OATP1B1) at 96 hrs post EP.
  • E17PG estradiol-17P-glucuronide
  • FIG. 8 is a graph of signal to noise ratio of estradiol-17P-glucuronide (i.e., E17PG) uptake following various incubation times in adhered HEK293 cells transfected with varying amounts of DNA (i.e., 0, 50 ⁇ g/ml, 100 ⁇ g/ml, 200 ⁇ g/ml or 400 ⁇ g/ml OATP2/OATP1B1) at 48 hrs post EP.
  • E17PG estradiol-17P-glucuronide
  • FIG. 9 is a graph of estradiol- 17P-glucuronide (i.e., E17PG) uptake activity in adhered HEK293 cells transfected with either OATP2/OATP1B1 using a small scale EP device (OC400), OATP2/OATP1B1 using a large scale EP device (CL2), or an empty vector control.
  • E17PG estradiol- 17P-glucuronide
  • FIG. 10 is a graph of signal to noise ratio of estradiol- 17P-glucuronide (i.e., E17PG) uptake following various incubation times in adhered HEK293 cells transfected with OATPIBI gene using either "Control” (i.e., traditional lipid transfection reagent (lipofectamine 2000, available from Invitrogen)) or STX, MaxCyte scalable EP device.
  • Control i.e., traditional lipid transfection reagent (lipofectamine 2000, available from Invitrogen)
  • STX MaxCyte scalable EP device.
  • FIG. 11 is a graph of signal to noise ratio of estradiol- 17P-glucuronide (i.e., E17PG) uptake following various incubation times in adhered HEK293 cells transfected with OATPIBI that are freshly plated or plated following thaw from cryopreservation.
  • E17PG estradiol- 17P-glucuronide
  • FIG. 12 are images of HEK293 cells transfected with OATPIBI * la (Gene Accession No. NM_006446.4), OATPIBI * lb (Gene Accession No. NM_006446.3), OATP1B3, pCMV vector, long isoform OATl (full length cDNA with 563 amino acids), OAT3, OCTl or OCT2 using MaxCyte scalable EP device and scale-up process followed by cryopreservation, thawing, plating on Poly-D-Lysine plates and incubation for 24 hrs post-plating.
  • FIG. 13 A is a graph depicting results of a time-dependent assay of p- Amino hippuric acid (i.e., PAH) (prototypical substrate for OATl) uptake in HEK293 cells overexpressing OATl or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with PAH at a concentration of 3 ⁇ .
  • PAH p- Amino hippuric acid
  • FIG. 13B is a graph depicting results of a kinetic assay whereby uptake of PAH at a concentration in the range of 3 to 200 ⁇ was measured in HEK293 cells overexpressing OATl following incubation for 5 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
  • FIG. 13C is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OATl were incubated with PAH at a concentration of 15 ⁇ and probenecid (i.e., an OATl inhibitor) at a concentration in the range of 0 - 300 ⁇ for 5 min.
  • IC50 calculated using Sigma-plot, is shown as insert in the graph.
  • FIG. 14A is a graph depicting results of a time-dependent assay of Estrone-3 -sulfate (i.e., E3S) (prototypical substrate for OAT3) uptake in HEK293 cells overexpressing OAT3 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with E3S at a concentration of 1 ⁇ .
  • E3S Estrone-3 -sulfate
  • FIG. 14B is a graph depicting results of a kinetic assay whereby uptake of E3S at a concentration in the range of 0.5 to 32 ⁇ was measured in HEK293 cells overexpressing OAT3 following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
  • FIG. 14C is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OAT3 were incubated with E3S at a concentration of 4 ⁇ and probenecid ⁇ i.e., an OAT3 inhibitor) at a concentration in the range of 0 - 300 ⁇ for 5 min.
  • IC50 calculated using Sigma-plot, is shown as insert in the graph.
  • FIG. 15A is a graph depicting results of a time-dependent assay of TEA ⁇ i.e., a prototypical substrate for OCTl) uptake in HEK293 cells overexpressing OCTl or pCMV vector following various incubation times ⁇ i.e., 1, 2, 5, 10 and 15 min.) with TEA at a concentration of 31 ⁇ .
  • TEA time-dependent assay of TEA ⁇ i.e., a prototypical substrate for OCTl
  • FIG. 15B is a graph depicting results of a time-dependent assay of metformin ⁇ i.e., a prototypical substrate for OCTl) uptake in HEK293 cells overexpressing OCTl or pCMV vector following various incubation times ⁇ i.e., 1, 2, 5, 10 and 15 min.) with metformin at a concentration of 3.8 ⁇ .
  • metformin ⁇ i.e., a prototypical substrate for OCTl
  • FIG. 15C is a graph depicting results of a concentration-dependent assay whereby uptake of TEA at a concentration of 1, 10 and 100 ⁇ was measured in HEK293 cells overexpressing OCTl or pCMV vector following incubation for 10 min.
  • FIG. 15D is a graph depicting results of a concentration-dependent assay whereby uptake of metformin at a concentration of 0.1, 1 and 10 ⁇ was measured in HEK293 cells overexpressing OCTl or pCMV vector following incubation for 10 min.
  • FIG. 15E is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OCTl were incubated with TEA and OCTl inhibitor ⁇ i.e., quinidine, verapamil or decynium-22) at various concentrations in the range of 0.1 - 500 ⁇ for 10 min.
  • OCTl inhibitor i.e., quinidine, verapamil or decynium-22
  • FIG. 15F is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OCTl were incubated with metformin at a concentration of 3.8 ⁇ and OCTl inhibitor cimetidine at various concentrations in the range of 4 ⁇ to 3 mM for 10 min.
  • FIG. 16A is a graph depicting results of a time-dependent assay of TEA ⁇ i.e., a prototypical substrate for OCT2) uptake in HEK293 cells overexpressing OCT2 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with TEA at a concentration of 31 ⁇ .
  • TEA time-dependent assay of TEA ⁇ i.e., a prototypical substrate for OCT2
  • various incubation times i.e., 1, 2, 5, 10 and 15 min.
  • FIG. 16B is a graph depicting results of a time-dependent assay of metformin (prototypical substrate for OCT2) uptake in HEK293 cells overexpressing OCT2 or pCMV vector following various incubation times (i.e. , 1, 2, 5, 10 and 15 min.) with metformin at a concentration of 3.8 ⁇ .
  • metformin prototypical substrate for OCT2
  • FIG. 16C is a graph depicting results of a concentration-dependent assay whereby uptake of TEA at a concentration of 1, 10 and 100 ⁇ was measured in HEK293 cells overexpressing OCT2 or pCMV vector following incubation for 10 min.
  • FIG. 16D is a graph depicting results of a concentration-dependent assay whereby uptake of metformin at a concentration of 0.1, 1 and 10 ⁇ was measured in HEK293 cells overexpressing OCT2 or pCMV vector following incubation for 10 min.
  • FIG. 16E is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OCT2 were incubated with metformin at a concentration of 3.8 ⁇ and OCT2 inhibitor cimetidine at a concentration in the range of 4 ⁇ to 3 mM for 10 min. IC50, calculated using Sigma-plot, is shown as insert in the graph.
  • FIG. 17A is a graph depicting results of a time-dependent assay of estradiol- 17 ⁇ - glucuronide (i.e. , E17PG) uptake in HEK293 cells overexpressing OATPlBl * la or pCMV vector following various incubation times (i.e. , 1, 2, 5, 10 and 15 min.) with E17PG at a concentration of 1 ⁇ .
  • estradiol- 17 ⁇ - glucuronide i.e. , E17PG
  • FIG. 17B is a graph depicting results of a time-dependent assay of estrone-3 -sulfate (i.e., E3S) uptake in HEK293 cells overexpressing OATPlBl * la or pCMV vector following various incubation times (i.e. , 1 , 2, 5, 10 and 15 min.) with E3S at a concentration of 1 ⁇ .
  • E3S estrone-3 -sulfate
  • FIG. 17C is a graph depicting results of a time-dependent assay of rosuvastatin uptake in HEK293 cells overexpressing OATPlBl * la or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with rosuvastatin at a concentration of 1 ⁇ .
  • FIG. 17D is a graph depicting results of a concentration-dependent assay whereby uptake of E17PG at a concentration in the range of 0.25 to 40 ⁇ was measured in HEK293 cells overexpressing OATPlBl*la following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
  • FIG. 17E is a graph depicting results of a concentration-dependent assay whereby uptake of rosuvastatin at a concentration in the range of 0.78 to 50 ⁇ was measured in HEK293 cells overexpressing OATPlBl*la following incubation for 5 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
  • FIG. 17F is a graph depicting results of a concentration-dependent assay whereby uptake of E17PG at a concentration of 1 ⁇ was measured in HEK293 cells overexpressing OATPlBl* la following incubation with inhibitor cyclosporin A at a concentration in the range of 0.04 to 30 ⁇ for 5 min.
  • IC50 calculated using Sigma-plot, is shown as insert in the graph.
  • FIG. 18A is a graph depicting results of a time-dependent assay of E17PG uptake in HEK293 cells overexpressing OATPlBl*lb or pCMV vector following various incubation times ⁇ i.e., 1, 2, 5, 10 and 15 min.) with E17PG at a concentration of 1 ⁇ .
  • FIG. 18B is a graph depicting results of a time-dependent assay of E3S uptake in HEK293 cells overexpressing OATPlBl*lb or pCMV vector following various incubation times ⁇ i.e., 1, 2, 5, 10 and 15 min.) with E3S at a concentration of 1 ⁇ .
  • FIG. 18C is a graph depicting results of a time-dependent assay of rosuvastatin uptake in HEK293 cells overexpressing OATPlBl*lb or pCMV vector following various incubation times ⁇ i.e., 1, 2, 5, 10 and 15 min.) with rosuvastatin at a concentration of 1 ⁇ .
  • FIG. 18D is a graph depicting results of a concentration-dependent assay whereby uptake of E17PG at a concentration in the range of 0.25 to 40 ⁇ was measured in HEK293 cells overexpressing OATPlBl*lb following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
  • FIG. 18E is a graph depicting results of an inhibition assay whereby uptake of E17PG at a concentration of 1 ⁇ was measured in HEK293 cells overexpressing OATPlBl*lb following incubation with inhibitor cyclosporin A at a concentration in the range of 0.04 to 30 ⁇ for 5 min. IC50, calculated using Sigma-plot, is shown as insert in the graph. [0052] FIG.
  • 19A is a graph depicting results of a time-dependent assay of cholecystokinin (i.e., CCK-8) uptake in HEK293 cells overexpressing OATP1B3 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with CCK-8 at a concentration of 1 ⁇ .
  • CCK-8 cholecystokinin
  • FIG. 19B is a graph depicting results of a time-dependent assay of E17PG uptake in HEK293 cells overexpressing OATP1B3 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with E17PG at a concentration of 1 ⁇ .
  • FIG. 19C is a graph depicting results of a concentration-dependent assay whereby uptake of CCK-8 at a concentration in the range of 0.5 to 20 ⁇ was measured in HEK293 cells overexpressing OATP1B3 following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
  • FIG. 19D is a graph depicting results of a concentration-dependent assay whereby uptake of rosuvastatin at a concentration in the range of 0.78 to 50 ⁇ was measured in HEK293 cells overexpressing OATP1B3 following incubation for 5 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
  • FIG. 19E is a graph depicting results of an inhibition assay whereby uptake of CCK-8 at a concentration of 1 ⁇ was measured in HEK293 cells overexpressing OATP1B3 following incubation with inhibitor cyclosporin A at a concentration in the range of 0.04 to 30 ⁇ for 2 min.
  • IC50 calculated using Sigma-plot, is shown as insert in the graph.
  • FIG. 20 is a flow chart of a suspension assay employing a centrifugation method or a vacuum manifold for characterizing activity of a drug transporter protein according to embodiments of this disclosure.
  • FIG. 21 is a flow chart of a suitable suspension assay employing a centrifugation method for characterizing activity of a drug transporter protein according to embodiments of this disclosure.
  • FIG. 22A is a bar graph of Corning® TransportoCellsTM cells cultured in Erlenmeyer shaker flasks (i.e., Shaker Flask), Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL-T175) or Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC-T175) with respect to Viability at Harvest (%) ⁇
  • FIG. 22B is a bar graph of Corning® TransportoCellsTM cells cultured in Erlenmeyer shaker flasks (i.e., Shaker Flask), Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL-T175) or Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC-T175) with respect to Average Fold of Cell Doubling (X).
  • Erlenmeyer shaker flasks i.e., Shaker Flask
  • Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap i.e., PDL-T175
  • Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap i.e., TC-T175) with respect to Average Fold of Cell Doubling (X).
  • FIG. 23A is a graph of Cell Density Per Well (K/well) of Corning® TransportoCellsTM cells cultured in Erlenmeyer shaker flasks (i.e., SF), Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL), or Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC) with respect to Uptake Activity (pmol/mg/min).
  • FIG. 23B is a graph of Cell Density Per Well (K/well) of Corning® TransportoCellsTM cells cultured in Erlenmeyer shaker flasks (i.e., SF), Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL), or Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC) with respect to Uptake Ratio.
  • the positive control (cells cultured in Erlenmeyer shaker flask, 300K/well) in this experiment exhibited an uptake ratio (i.e., S/N) of 24 with substrate.
  • FIG. 24 is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), negative control cells (i.e., Neg Control), or HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD shaker flask), Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: Plating PDL), Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Attached: Plating TC), or Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Attached: CD/FBS TC) for 48 hours and supplemented with sodium butyrate with respect to Uptake Activity (pmol/mg/min).
  • CD_10% FBS i.e., Attache
  • FIG. 25A is a graph of Culture Time (hours) of HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD Shaker Flask) or in Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: PM PDL) supplemented with sodium butyrate with respect to Cell Doubling.
  • Erlenmeyer shaker flasks i.e., Susp: CD Shaker Flask
  • Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap i.e., Attached: PM PDL
  • FIG. 25B is a graph of Culture Time (hours) of HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD Shaker Flask) or in Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: PM PDL) supplemented with sodium butyrate with respect to Uptake Activity (pmol/mg/min).
  • Erlenmeyer shaker flasks i.e., Susp: CD Shaker Flask
  • Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap i.e., Attached: PM PDL
  • Uptake Activity pmol/mg/min
  • FIG. 26 is a bar graph of HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD Shaker Flask) and of HEK293 cells cultured in Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: PM PDL) with and without the addition of sodium butyrate 24 hours prior to harvest with respect to Uptake Activity Immediately Post-Thawing (pmol/mg/min).
  • FIG. 27A is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), negative control cells (i.e., Neg Control), HEK293 cells cultured in Erlenmeyer Shaker Flasks (i.e., Susp: CD shaker flask), in Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: Plating PDL), in Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Attached: Plating TC), or in Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Attached: CD/FBS TC) with respect to Uptake Activity (pmol/mg/min), wherein activity was assessed via Suspension Assay at 0 hours post-thaw,
  • FIG. 27B shows an image of confluency of HEK293 cells at the 4-hour plate assay, wherein the cells were cultured in Erlenmeyer Shaker Flasks.
  • FIG. 27C shows an image of concluency of HEK 293 cells at the 4-hour plate assay, wherein the cells were cultured in Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap.
  • FIG. 28 is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), HEK293 cells cultured in Erlenmeyer Shaker Flasks (i.e., Susp: CD shaker flask), in Corning® BioCoat 1 TM PDL 175 cm Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: Plating PDL), in Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Attached: Plating TC), or in Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Attached: CD/FBS TC) with respect to Uptake Ratio, wherein activity was assessed via Suspension Assay at 0 hours post-thaw, Suspension Assay at 1 hour post-thaw, or Plate As
  • FIG. 29A is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), negative control cells (i.e., Neg Control), HEK293 cells cultured in Erlenmeyer Shaker Flasks (i.e., Susp: CD SF), in Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Atta: Plating PDL), in Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Atta: Plating TC), or in Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Atta: CD/FBS_TC) with respect to Viability (%), wherein HEK293 cells were thawed in Plating Media or in HBSS Buffer.
  • CD SF Erlen
  • FIG. 29B is a graph of Viability (%) with respect to Thawing Media (i.e., HBSS Buffer or Plating Media) as described in FIG. 29A.
  • FIG. 30 is a flow chart of suitable culturing conditions according to embodiments of this disclosure.
  • FIG. 31A is a bar graph showing the uptake of E17BG in the presence and absence of sodium butyrate ("SB") in HEK-293 cells that overexpressed monkey Oatplbl, dog Oatplb4, and rat Oatplb2, as compared to human OATPlBl* la (i.e., wild-type).
  • SB sodium butyrate
  • FIG. 3 IB is a bar graph showing the uptake of rosuvastatin in the presence and absence of sodium butyrate ("SB") in HEK-293 cells that overexpressed monkety Oatplbl, dog Oatplb4, and rat Oatplb2, as compared to human OATPlBl* la (i.e., wild-type).
  • SB sodium butyrate
  • FIG. 32 is a graph of the time-dependent uptake of the probe substrate via OATP/Oatps. Uptake of 2.0 ⁇ estradiol-17P-glucuronide in human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 cells were determined at 1, 2, 5, 10, and 15 minutes, respectively at 37°C [0077]
  • FIG. 33 is a graph of Km values of E17BG in HEK-293 cells overexpressing monkey Oatplbl, dog Oatplb4, and rat Oatplb2 (following incubation of 5 minutes). Km values were calculated according to Michaelis-Menten kinetics.
  • FIG. 34A is a graph of the species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for prototypical estradiol- 17P-glucuronide.
  • FIG. 34B is a graph of the species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for prototypical estrones- sulfate.
  • FIG. 34C is a graph of the species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for prototypical CCK-8.
  • FIG. 34D is a species differences of human OATPlBl *la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for pitavastatin.
  • FIG. 34E is a species differences of human OATPlBl*la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for atorvastatin.
  • FIG. 34F is a species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for pravastatin.
  • FIG. 34G is a species differences of human OATPlBl *la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for simvastatin.
  • FIG. 35A is a graph depicting the results of a kinetic assay whereby uptake of estradiol- 17P-glucuronide in human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 was measured after a 2-minute incubation at 37°C.
  • FIG. 35B is a table of the calculated results of the kinetic assays depicted in FIG. 35 A.
  • FIG. 35C s a graph depicting the results of a kinetic assay whereby uptake of rosuvastatin in human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 was measured after a 2-minute incubation at 37°C.
  • FIG. 35D is a table of the calculated results of the kinetic assays depicted in FIG. 35C.
  • FIG. 35E is a graph depictingthe results of a kinetic assay whereby uptake of atorvastatin in human OATPlBl*la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 was measured after a 2-minute incubation at 37°C.
  • FIG. 35F is a table of the calculated results of the kinetic assays depicted in FIG. 35E.
  • FIG. 36A is a graph depicting the IC 50 values of human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 determined by co-incubating the cells with 1 ⁇ E17PG with cyclosporin A at a range of concentrations.
  • FIG. 36B is a graph depicting the IC 50 values of human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 determined by co-incubating the cells with 1 ⁇ rosuvastatin with gemfibrozil at a range of concentrations.
  • FIG. 37A is a table depicting results of thawing and recovery of 0ATP1B1 *5 and 0ATP1B1* 15 HEK-293 cells.
  • FIG. 37B is a table depicting results of thawing and recovery, as well as Uptake Ratio of OAT2, OAT4, OCTN2 HEK-293 cells using the probe substrate Used in the table.
  • FIG. 37C is a tabe depicting results of thawing and recovery, as well as Uptake Ratio, of monkey Oatplbl, dog Oatplb4, and rat Oatplb2 HEK-293 cells using ⁇ 17 ⁇ &
  • FIG. 37D are images of the Figure 20A HEK-293 cells transfected with 0ATP1B1*5 and 0ATP1B1* 15, plated at 0.4 x 10 6 cells per well in 24-well poly-D-lysine coated plates at 24 hrs post-plating (following thaw from cryopreservation).
  • FIGS. 38A is a graph of the results of uptake assays conducted on OATPlBl*la, 0ATP1B1 *5, 0ATP1B1* 15 and control cells for fluorescein methotrexate (F-MTX).
  • FIG. 38C is a graph of the results of uptake assays conducted on OATPlBl *la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for atorvastatin.
  • FIG. 38D is a graph of the results of uptake assays conducted on OATPlBl *la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for simvastatin.
  • FIG. 38E is a graph of the results of uptake assays conducted on OATPlBl* la, 0ATP1B1*5, 0ATP1B1* 15 and control cells for pitavastatin.
  • FIG. 38F is a graph of the results of uptake assays conducted on OATPIBI * la, 0ATP1B1*5, 0ATP1B1*15 and control cells for and fluvastatin.
  • FIGS. 39A is a graph of the results of kinetic assays conducted on OATPlBl*la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for ⁇ 17 ⁇ &
  • FIGS. 39B is a graph of the results of kinetic assays conducted on OATPlBl*la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for pitavastatin.
  • FIGS. 39C is a graph of the results of kinetic assays conducted on OATPlBl*la, OATPIBI *5, OATPIBI *15 and control cells for rosuvastatin.
  • FIG. 39D is a table of the calculated results of the kinetic assays depicted in FIGS 39A-39F.
  • FIG. 40 is a graphic illustration of the LC-MS/MS mediated targeted protein quantification process used.
  • FIGS. 41 A-41D are graphs of the results of extract ion chromatograms of selected reaction monitoring for AQUA® peptide (Sigma-Aldrich) and samples of CORNING® TRANSPORTOCELLSTM OATPIBI* la, control cells, 0ATP1B1*5 and 0ATP1B1*15 prepared according to the graphic illustration of FIG. 40.
  • the lined arrow represents the peak for the signature peptide for OATPIBI and the solid arrow represents the peak for the internal standard.
  • FIG. 42A is a graph of the DNA concentration necessary to achieve consistent expression across OATPIBI wild-type and single nucleotide polymorphisms.
  • FIG. 42B is a graph showing the consistency of uptake activity and ratios across four different wild-type OATPIBI lots.
  • FIG. 42C is a graph showing the consistency of protein expression across a control, three different wild-type OATPIBI lots, a 0ATP1B1*5 lot and a OATPIBI*! 5 lot.
  • the term "cell” includes both primary cells as well as established cell lines (e.g., human embryonic kidney ⁇ 293 cells, Chinese hamster ovary CHO, Madin- Darby Canine Kidney Cells MDCK, Pig Kidney Epithelial Cells LLC-PKl, human epithelial colorectal adenocarcinoma cells Caco-2 and Chinese hamster lung fibroblast V79 cells).
  • established cell lines e.g., human embryonic kidney ⁇ 293 cells, Chinese hamster ovary CHO, Madin- Darby Canine Kidney Cells MDCK, Pig Kidney Epithelial Cells LLC-PKl, human epithelial colorectal adenocarcinoma cells Caco-2 and Chinese hamster lung fibroblast V79 cells.
  • drug transporter protein refers to a membrane bound transport protein that includes, but is not limited to, ATP binding cassette (hereinafter, “ABC”) transporters and solute carrier (hereinafter, “SLC”) transporters.
  • ABSC ATP binding cassette
  • SLC solute carrier
  • drug metabolizing enzyme includes, but is not limited to, cytochromes such as cytochromes (i.e., CYPs) P450; UDP-glucouronyl transferases (i.e., Uridine 5'-diphospho-glucuronosyltransferase) and other non-CYP drug metabolizing enzymes such as alcohol dehydrogenases, monoamine oxidases and aldehyde oxidases.
  • cytochromes i.e., CYPs
  • UDP-glucouronyl transferases i.e., Uridine 5'-diphospho-glucuronosyltransferase
  • other non-CYP drug metabolizing enzymes such as alcohol dehydrogenases, monoamine oxidases and aldehyde oxidases.
  • the term "detectable” means that the activity of a selected probe substrate in cells transfected with a drug transporter protein and/or drug metabolizing enzyme shall be higher than the activity of the same probe substrate in cells transfected with empty vector; desirably, the difference in activity will be at least 5-fold.
  • transporter nomenclature identifies the human protein/gene, i.e., MRP2/ABCC2, etc. ; smaller case letters indicate the transporter derives from a preclinical (i.e., nonhuman mammalian) species, e.g., Mrp2/Abcc2, etc. Unless otherwise specified, a gene is derived from any species (e.g., human or other mammal).
  • OATPIBI As used herein, the terms "OATPIBI”, “OATP2”, and “SLCO 1B1" are interchangeable and refer to a human protein/gene that corresponds to the nonhuman protein/gene Oatp2. Unless noted otherwise, reference to OATPIBI is to OATPIBI* la.
  • OATl and “SLC22A6” are interchangeable and refer to an organic anion transporter 1. Unless noted otherwise, reference to OATl is to the full length cDNA encoding with 563 amino acids (also referred to herein as "OATl long").
  • SNP single nucleotide polymorphism
  • recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof, are disclosed.
  • the recombinant cells are cryopreserved and activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof, is detectable in a population of the recombinant cells prior to cryopreservation and/or following thaw from cryopreservation.
  • the recombinant cells are cryopreserved and activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof, is detectable in a population of the recombinant cells prior to cryopreservation and/or following thaw from cryopreservation at an uptake ratio of at least 5 ⁇ i.e., 5: 1).
  • the recombinant cells are cryopreserved and activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof, is detectable in a population of the recombinant cells prior to cryopreservation at an uptake ratio of at least 5.
  • the recombinant cells are mammalian cells derived from a human or a non-human ⁇ e.g. , mouse, rat, dog, monkey, hamster, and pig, etc.).
  • the recombinant cells are hepatocytes or endothelial cells.
  • the recombinant cells are hepatocytes.
  • the recombinant cells are established cells lines, such as, e.g. , human embryonic kidney HEK293 cells.
  • the recombinant cells transiently overexpress one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof.
  • the recombinant cells are transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof.
  • the recombinant cells are transiently transfected as described subsequently with regard to processes of preparing cryopreserved, transiently transfected recombinant cells.
  • the one or more transiently overexpressed genes is derived individually from a human or non- human (i.e., an animal) species.
  • the non-human species from which the one or more transiently overexpressed genes is derived are selected from the group consisting of a mouse, a rat, a dog, a monkey, a pig, and a guinea pig.
  • a benefit of using monkey Oatplbl and lb3 is the high degree of homology with the human counterparts; specifically, there is homology of approximately 91.9% between OATPIBI and monkey Oatplbl, and there is homology of approximately 93.5% between OATP1B3 and monkey Oatplb3.
  • Dog Oatplb4 was cloned in 2010; since then, it has been determined that its expression level is the highest as compared to other Oatp family members.
  • Rat Oatplb2 is considered to be the rodent counterpart of the human OATP IB family.
  • the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein selected from the group consisting of ABC transporters, SLC transporters, and a combination thereof.
  • the recombinant cells include one or more transiently overexpressed genes encoding an ABC transporter.
  • the human ABC transporter includes at least one of the proteins set forth in Table 1.
  • the one or more genes encoding the human ABC transporter include at least one of the genes set forth in Table 1.
  • the recombinant cells include one or more transiently overexpressed genes encoding a human SLC transporter.
  • the SLC transporter includes at least one of the proteins set forth in Table 2.
  • the one or more genes encoding the human SLC transporter include at least one of the genes set forth in Table 2.
  • OATP1B1 includes OATPlBl*la and OATPlBl*lb, OATP1B 5, and 0ATP1B1*15.
  • the one or more genes encoding a human SLC transporter include at least one of the genes set forth in Table 3.
  • the recombinant cells include one or more transiently overexpressed genes selected from the group consisting of MDRl/Mdrla/Mdrlb, MRPl/Mrpl, MRP2/Mrp2, MRP3/Mrp3, MRP4/Mrp4, MRP5/Mrp5, MRP6/Mrp6, MRP7/Mrp7, MRP 8/Mrp8, BCRP/Bcrp, BSEP/Bsep, OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATEl/Matel, MATE2K/Mate2, URATl/
  • the recombinant cells include one or more transiently overexpressed genes selected from the group consisting of OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATE 1 /Mate 1, MATE2K Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof.
  • OATP2/Oatp2 is selected from the group consisting of OATPlBl* la, OATPlBl* lb, 0ATP1B1*5, 0ATP1B1* 15 and combinations thereof. In some embodiments, OATP2/Oatp2 is OATPlBl* lb. In some embodiments, OATP2/Oatp2 is 0ATP1B1 *5. In some embodiments, OATP2/Oatp2 is 0ATP1B1*15.
  • the recombinant cells include one or more transiently overexpressed genes that encodes a solute carrier transporter protein selected from the group consisting of monkey Oatplbl, monkey Oatplb3, dog Oatplb4, rat Oatplb2, rat Oatplal, rat Oatpla4, and a combination thereof.
  • the recombinant cells include one or more transiently overexpressed genes that encodes monkey Oatplbl and monkey Oatplb3.
  • the recombinant cells include one or more transiently overexpressed genes that encondes dog Oatplb4.
  • the recombinant cells include one or more transiently overexpressed genes that encondes rat Oatplb2.
  • the recombinant cells include one or more transiently overexpressed genes encoding a drug metabolizing enzyme.
  • the recombinant cells include one or more transiently overexpressed genes encoding a drug metabolizing enzyme selected from the group consisting of cytochrome drug metabolizing enzymes, non-cytochrome drug metabolizing enzymes, and a combination thereof.
  • the recombinant cells include one or more transiently overexpressed genes encoding CYPs P450, UDP-glucouronyl transferases, alcohol dehydrogenases, monoamine oxidases, or aldehyde oxidases.
  • activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is detectable in a population of the recombinant cells prior to cryopreservation and/or following thaw from cryopreservation at an uptake ratio of at least 5. In some embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is detectable in a population of the recombinant cells prior to cryopreservation at an uptake ratio of at least 5.
  • the recombinant cells In recombinant cells wherein activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is detectable in a population of the recombinant cells prior to cryopreservation, the recombinant cells have been transfected with one or more genes and have been cultured (such as, e.g. , via suspension or adherent culture) for a period of time sufficient to initiate protein expression in the recombinant cells prior to cryopreservation.
  • activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5. In some particular embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells within four hours of thaw from cryopreservation at an uptake ratio of at least 5.
  • the recombinant cells In recombinant cells wherein activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells within 4 hours of thaw from cryopreservation, the recombinant cells have been transfected with one or more genes and have been cultured (such as, e.g. , via suspension or adherent culture) prior to cryopreservation for a period of time sufficient to initiate protein expression in the recombinant cells.
  • the recombinant cells are assay-ready.
  • assay-ready recombinant cells are suitable for screening drug candidates (without culturing) to determine whether they have an effect on drug transporter proteins and/or drug metabolizing enzymes.
  • drug candidates can be screened to determine if any are substrates or inhibitors of the drug transporter proteins and/or drug metabolizing enzymes.
  • a drug candidate is a substrate of a drug transporter protein and/or a drug metabolizing enzyme
  • the drug candidate will be affected.
  • the drug candidate will be translocated in and/or out of the recombinant cell via the drug transporter protein.
  • the drug candidate is an inhibitor of the drug transporter protein
  • the drug candidate will inhibit translocation of a substrate of the drug transporter protein in and/or out of the recombinant cell.
  • screening is conducted using whole cells and/or subcellular fractions thereof (such as, e.g., via use of microsomes and/or cytosol).
  • activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof would be detectable in a population of recombinant cells within 48 hours of thawing from cryopreservation. In some particular embodiments, activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof, would be detectable in a population of recombinant cells at about 0 hours post-thaw from cryopreservation (i.e.
  • the recombinant cells have been transfected with one or more genes prior to cryopreservation and have been cultured for a period of time sufficient to initiate protein expression in the recombinant cells either prior to cryopreservation or following thaw from cryopreservation.
  • the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity of the drug transporter protein is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of at least 5. In embodiments, activity of the drug transporter protein is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of from about 5 to about 150.
  • the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity thereof is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30.
  • the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g. , a plated population), a suspended population, or a combination thereof.
  • the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity of the drug transporter protein would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5. In embodiments, activity of the drug transporter protein would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150.
  • the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity thereof would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30.
  • the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g., a plated population), a suspended population, or a combination thereof.
  • activity of a drug transporter protein and/or drug metabolizing enzyme in recombinant cells are known to the skilled artisan, such as, e.g., via uptake assay.
  • activity of a drug transporter protein and/or drug metabolizing enzyme is detected by washing the cells with appropriate buffer (such as, e.g., pre- warmed HBSS buffer with Ca 2+ and Mg 2+ for thawed Corning® TransportoCellsTM) and pre- incubating the cells in appropriate buffer (such as, e.g., HBSS buffer for 10 minutes at 37 °C for thawed Corning® TransportoCellsTM).
  • appropriate buffer such as, e.g., pre- warmed HBSS buffer with Ca 2+ and Mg 2+ for thawed Corning® TransportoCellsTM
  • appropriate buffer such as, e.g., HBSS buffer for 10 minutes at 37 °C for thawed Corning® TransportoCellsTM.
  • An uptake assay may then be performed by adding appropriate labeled substrates (such as, e.g., radio-labeled substrates) and/or appropriate labeled inhibitors (such as, e.g., radio-labeled inhibitors) and incubating at 37 °C for an appropriate period of time (such as, e.g., 2 minutes for MATE1/2K; 5 minutes for OATPlBl *la, OATP1B3, and OAT1/3; or 10 minutes for OCTl/2). Reactions may be stopped by removing substrate solutions and washing the cells with cold buffer (such as, e.g., HBSS buffer for Corning® TransportoCellsTM).
  • appropriate labeled substrates such as, e.g., radio-labeled substrates
  • appropriate labeled inhibitors such as, e.g., radio-labeled inhibitors
  • Cells may be lysed with M-Per Mammalian Protein extraction reagent and uptake activity may be quantified using liquid scintillation counting normalized for protein concentration in each sample.
  • Kinetic parameters may be determined via non-linear regression using SigmaPlot.
  • the initial uptake may be calculated by subtracting the initial rate determined in control cells from that obtained in experimental, recombinant cells expressing the drug transporter protein and/or drug metabolizing enzyme.
  • IC50 values may be determined using Sigmoidal Hill four-parameter equation.
  • Activity of a drug transporter protein and/or drug metabolizing enzyme may be detected via an adherent assay (such as, e.g. , a plated population) or a suspension assay, as described subsequently.
  • Embodiments of recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof have been described in detail. Reference will now be made in detail to embodiments of processes of preparing cryopreserved, transiently transfected recombinant cells.
  • processes of preparing cryopreserved transiently transfected recombinant cells are disclosed.
  • the processes may include transiently transfecting cells with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof (providing transiently transfected recombinant cells), and cryopreserving the transiently transfected recombinant cells within 72 hours of transfection.
  • the processes include transiently transfecting cells with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof (providing transiently transfected recombinant cells), and cryopreserving the transiently transfected recombinant cells within 48 hours of transfection.
  • a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation and/or following thaw from cryopreservation.
  • the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation and/or following thaw from cryopreservation, wherein the detectable level is an uptake ratio of at least 5 ⁇ i.e., 5: 1).
  • the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation, wherein the detectable level is an uptake ratio of at least 5.
  • the recombinant cells are as previously described with regard to recombinant cells.
  • the cells are transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or a combination thereof.
  • the one or more genes encoding a drug transporter protein, drug metabolizing enzyme, or a combination thereof are as previously described with regard to recombinant cells.
  • the cells are transiently transfected with one or more genes encoding a drug transporter protein to provide transiently transfected recombinant cells.
  • transfection includes introducing genes into a population of cells.
  • Gene delivery systems e.g., transient transfection systems
  • Exemplary, non-limiting transient transfection systems include virus-based gene delivery methods, lipid-based transfection methods, electroporation (i.e., EP), and combinations thereof.
  • virus-based gene delivery methods such methods require special handling due to safety concerns.
  • lipid-based transfection methods such methods are costly and are not amenable to large-scale manufacturing processes.
  • lipid-based transfection methods provide relatively low gene delivery efficiency and relatively delayed protein expression (e.g., from 72 hours to 96 hours post-transfection) (data not shown).
  • EP is amenable to large-scale manufacturing processes and avoids the safety issues of viral-based gene delivery methods.
  • EP results in relatively efficient gene delivery.
  • EP leads to the surprising and unexpected effect of improved (decreased) lot-to- lot variability, improved manufacturability of the instantly-disclosed transiently transfected, cryopreserved cells, as well as an improved, earlier response time and increased levels of expression and activity of transiently transfected drug transporter proteins as compared to lipid-based transfection methods.
  • the processes of preparing transiently transfected recombinant cells include transiently transfecting cells via EP.
  • cells are pelleted down via centrifugation, aspirated, and resuspended in appropriate EP buffer (such as, e.g., buffer available from MaxCyte, Cat. No. B201).
  • EP buffer such as, e.g., buffer available from MaxCyte, Cat. No. B201.
  • a cell stock may then be prepared by transferring the cell suspension to 50 ml Falcon tubes, pelleting down via centrifugation, and resuspending in appropriate EP buffer to a final cell density of, e.g., 100 x 10 6 cells/ml.
  • DNA to be used for EP may then be prepared in sterile water (such as, e.g., to a final concentration of 5 mg/ml).
  • sterile water such as, e.g., to a final concentration of 5 mg/ml.
  • 0.4 ml of the cell stock and DNA may be transferred to a sterile 1.5 ml eppendorf tube and processed in an OC-400 Processing Assembly (available from MaxCyte, Cat. No. OC-400R) for EP.
  • Vectors used for transient transfection utillize the CMV promoter (such as, e.g., pCMV6-XL5, pCMV6-Entry, and pCMV6-AC vectors available from Origene).
  • gene(s) encoding a drug transporter protein and/or a drug metabolizing enzyme will be overexpressed such that activity of the protein(s) encoded therefrom are detectable following thaw from cryopreservation.
  • Drug candidates can be tested to determine if any are substrates or inhibitors of the protein(s) encoded from the overexpressed gene(s) by incubation of the recombinant cells therewith. In particular, if a drug candidate is a substrate of a drug transporter protein and/or a drug metabolizing enzyme, the drug candidate will be affected.
  • the drug candidate is a substrate of a drug transporter protein
  • the drug candidate will be translocated in or out of the recombinant cell via the drug transporter protein.
  • the drug candidate is an inhibitor of the drug transporter protein
  • the drug candidate will inhibit translocation of a substrate of the drug transporter protein in or out of the recombinant cell.
  • the recombinant cells of the present disclosure are further transfected with RNAi and/or siRNA of the transiently overexpressed genes to knockdown and/or knockout the expression thereof.
  • primary cells such as, e.g., hepatocytes
  • RNAi and/or siRNA directed against any ABC transporters, SLC transporters, and/or any drug metabolizing enzymes to knockdown and/or knockout the expression thereof.
  • the transiently transfected recombinant cells are cryopreserved within 72 hours of transfection.
  • the transiently transfected recombinant cells are cultured for a period of time sufficient to initiate protein expression in the recombinant cells prior to cryopreservation.
  • the transiently transfected recombinant cells are cultured for from about 24 hours to about 72 hours, or for about 48 hours prior to cryopreservation.
  • the transiently transfected recombinant cells are cultured for a period of time sufficient to initiate protein expression in the recombinant cells prior to cryopreservation. In some embodiments, the transiently transfected recombinant cells are cultured for from about 24 hours to about 72 hours, or for about 48 hours prior to cryopreservation. In embodiments wherein a population of cells which would overexpress the one or more genes at a detectable level within 48 hours following thaw from cryopreservation is desired (e.g.
  • the transiently transfected recombinant cells are cultured for from about 24 hours to about 72 hours, or for about 48 hours prior to cryopreservation.
  • the transiently transfected recombinant cells are cultured in suitable culturing conditions via suspension culture or adherent culture (such as, e.g., a plated culture).
  • the transiently transfected recombinant cells are cultured in suitable culturing conditions via suspension culture in shaker flasks.
  • the transiently transfected recombinant cells are cultured in suitable culturing conditions via adherent culture in microplates or T-flasks.
  • the transiently transfected recombinant cells are cultured in suitable culturing conditions via suspension or adherent culture at a cell density of from about 100K cells/well to 300K cells/well. In specific embodiments, the transiently transfected cells are cultured in suitable culturing conditions via suspension culture or adherent culture at a cell density of at least about 200K cells/well. In other specific embodiments, the transiently transfected cells are cultured in the presence of sodium butyrate. In further specific embodiments, the transiently transfected cells are cultured in the presence of sodium butyrate provided to a final concentration of 5 mM. In embodiments, the transiently transfected recombinant cells are harvested following culturing.
  • Methods for harvesting transiently transfected recombinant cells are known to the skilled artisan, such as, e.g. , via centrifugation and/or treatment with Trypsin or Dulbecco's Phosphate-Buffered Saline.
  • the transiently transfected recombinant cells are cryopreserved within 72 hours of transfection. In some embodiments, the transiently transfected recombinant cells are cryopreserved within 48 hours of transfection. Methods for cryopreserving transiently transfected recombinant cells are known to the skilled artisan. In exemplary, non-limiting embodiments, transiently transfected recombinant cells are cryopreserved by pelleting down transiently transfected recombinant cells via centrifugation and resuspending in freshly prepared appropriate ice-cold freezing media (such as, e.g. , 9 parts culturing medium and 1 part DMSO). Then, cryo vials may be filled with 1-2 ml of the suspended transiently transfected recombinant cells and placed on ice-cold Mr. Frosty freezing container and stored in a -80 °C freezer overnight.
  • appropriate ice-cold freezing media such as, e.g
  • a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation and/or following thaw from cryopreservation, wherein the detectable level is an uptake ratio of at least 5.
  • a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation, wherein the detectable level is an uptake ratio of at least 5.
  • activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5. In some particular embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells within four hours of thaw from cryopreservation at an uptake ratio of at least 5.
  • the recombinant cells are assay- ready.
  • assay-ready recombinant cells are suitable for screening drug candidates (such as, e.g., without culturing) to determine whether they have an effect on drug transporter proteins and/or drug metabolizing enzymes.
  • a suspended population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at a detectable level at about 0 hours post-thaw from cryopreservation (i.e. , immediately following thaw from cryopreservation).
  • a suspended population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at a detectable level within 1 hour post thaw from cryopreservation.
  • the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at the detectable level within 1 hour post thaw from cryopreservation as determined via a suspension assay.
  • an adherent population (such as, e.g. , a plated population) of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at a detectable level within 4 hours post thaw from cryopreservation.
  • the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at the detectable level within 4 hours post thaw from cryopreservation as determined via an adherent (such as, e.g., a plated) assay.
  • an adherent such as, e.g., a plated
  • a population of the transiently transfected recombinant cells would transiently overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or combination thereof at a detectable level following thaw from cryopreservation, wherein the detectable level is an uptake ratio of at least 5.
  • a population of the transiently transfected recombinant cells would transiently overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or combination thereof at a detectable level at about 0 hrs post-thaw from cyropreservation (i.e.
  • cryopreservation immediately post-thaw
  • at about 1 hour post-thaw from cryopreservation at about 4 hours post-thaw from cryopreservation, at about 8 hours post-thaw from cryopreservation, at about 16 hours post- thaw from cryopreservation, at about 24 hours post- thaw from cryopreservation, or at about 48 hours post-thaw from cryopreservation.
  • the transiently transfected recombinant cells transiently overexpress one or more genes encoding a drug transporter protein, wherein activity of the drug transporter protein is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of at least 5.
  • the detectable level is at an uptake ratio of from about 5 to about 150.
  • the detectable level is at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30.
  • the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g. , a plated population), a suspended population, or a combination thereof.
  • the transiently transfected recombinant cells would transiently overexpress one or more genes encoding a drug transporter protein, wherein activity of the drug transporter protein would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5.
  • the detectable level is an uptake ratio of from about 5 to about 150.
  • the detectable level is at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30.
  • the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g. , a plated population), a suspended population, or a combination thereof.
  • Methods for detecting activity of a drug transporter protein and/or drug metabolizing enzyme in recombinant cells are as previously described with regard to recombinant cells.
  • activity of the drug transporter protein and/or drug metabolizing enzyme may be detected via an uptake assay.
  • suspension assays for assessing activity of drug transporter proteins and/or drug metabolizing enzymes in recombinant cells are disclosed.
  • the suspension assays include: (1) providing suspended, recombinant cells transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or a combination thereof, with a substrate; (2) stopping reaction of the drug transporter protein, drug metabolizing enzyme, or combination thereof, with the substrate; (3) separating the recombinant cells and the substrate via centrifugation; and (4) assessing activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof.
  • the recombinant cells are as previously described with regard to recombinant cells.
  • the cells are transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or a combination thereof, as previously described with regard to processes of preparing cryopreserved, transiently transfected recombinant cells.
  • the one or more genes encoding a drug transporter protein, drug metabolizing enzyme, or a combination thereof are as previously described with regard to recombinant cells.
  • suspended, recombinant transiently transfected cells are provided and/or contacted with a substrate.
  • the recombinant, transiently transfected cells are suspended in buffer (such as, e.g. , Hank's Balanced Salt Solution with Ca 2+ and Mg 2+ ).
  • the recombinant, transiently transfected cells are suspended in buffer to a cell density of about 1 x 10 6 cells/ml.
  • suspended, recombinant cells transiently transfected with one or more genes encoding a drug transporter protein and/or a drug metabolizing enzyme are provided and/or contacted with a substrate.
  • the substrate is provided in a substrate solution.
  • suspended, recombinant cells transiently transfected with one or more genes encoding a drug transporter protein are provided and/or contacted with a substrate solution.
  • the substrate solution includes a substrate upon which the drug transporter protein is capable of acting and/or a buffer.
  • the substrate solution contains a labeled substrate (such as, e.g.
  • the substrate solution may contain Estradiol 17- ⁇ Glucuronide, fluorescein methotrexate, 8-fluorescein-cAMP, and/or Hank's Balanced Salt Solution.
  • the suspended, recombinant transiently transfected cells are provided at a cell density of about 200K cells/well and about 50 ⁇ _, of the 5X substrate solution is provided for a final IX substrate.
  • both cells and substrate are resuspened/dissolved in buffer.
  • the suspended, transiently transfected recombinant cells are provided and/or contacted with a substrate solution in a vessel, such as, e.g., a microplate.
  • a biochemical reaction of the drug transporter protein and/or drug metabolizing enzyme and substrate is inhibited and/or stopped.
  • biochemical reaction of the drug transporter protein and substrate is inhibited and/or stopped.
  • the biochemical reaction is inhibited and/or stopped by providing and/or contacting the substrate with cold buffer.
  • the cold buffer is Hank's Balanced Salt Solution. In further particular embodiments, about 50 ⁇ of Hank's Balanced Salt Solution is provided.
  • reaction of the drug transporter protein and substrate is inhibited and/or stopped by providing and/or contacting the substrate with cold buffer and placing the suspended, transiently transfected recombinant cells and/or substrate on ice.
  • placing the suspended, transiently transfected recombinant cells and/or substrate on ice involves placing a vessel (such as, e.g., a microplate) including the transiently transfected recombinant cells and/or substrate on ice.
  • the suspended, transiently transfected recombinant cells and/or substrate are separated via centrifugation.
  • the suspended, transiently transfected recombinant cells and/or substrate are centrifuged at about 1000 g for about 1 minute at about 4 °C.
  • a cell pellet including the transiently transfected recombinant cells may form.
  • a cell pellet formed during centrifugation is washed with buffer.
  • the wash buffer is Hank's Balanced Salt Solution.
  • the cell pellet formed during centrifugation is washed 3 times with Hank's Balanced Salt Solution (HBSS).
  • HBSS Hank's Balanced Salt Solution
  • activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is assessed.
  • methods for assessing and/or detecting the activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof are as previously described with regard to recombinant cells.
  • activity of the drug transporter protein and/or drug metabolizing enzyme may be assessed via lysing and the appropriate radiolabel and/or fluorescent analysis of the radiolabled or fluorescent substrate.
  • the disclosure provides a recombinant cell including one or more transiently overexpressed genes encoding a drug transporter protein.
  • the recombinant cell is cryopreserved, and activity of the drug transporter protein is detectable in a population of the recombinant cells prior to cyropreservation at an uptake ratio of at least 5.
  • the disclosure provides a recombinant cell of the first aspect, in which the activity of the drug transporter protein would be detectable in a population of the recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5.
  • the disclosure provides a recombinant cell of the first or the second aspect, in which the activity of the drug transporter protein would be detectable in the population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150.
  • the disclosure provides a recombinant cell of the first to the third aspects, in which the activity of the drug transporter protein would be detectable in a plated population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 30 within 4 hours of thawing.
  • the disclosure provides a recombinant cell of the first to the third aspects, in which the activity of the drug transporter protein would be detectable in a suspended population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150 within 1 hour of thawing.
  • the disclosure provides a recombinant cell of the first to the fifth aspects, in which the drug transporter protein is selected from the group consisting of an ATP binding cassette transporter and a solute carrier transporter protein.
  • the drug transporter protein is selected from the group consisting of an ATP binding cassette transporter and a solute carrier transporter protein.
  • the disclosure provides a recombinant cell of the first to the sixth aspects, in which the one or more transiently overexpressed genes is selected from the group consisting of MDRl/Mdrla/Mdrlb, MRPl/Mrpl, MRP2/Mrp2, MRP3/Mrp3, MRP4/Mrp4, MRP5/Mrp5, MRP6/Mrp6, MRP7/Mrp7, MRP 8/Mrp8, BCRP/Bcrp, BSEP/Bsep, OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, O
  • the disclosure provides a recombinant cell of the first to the seventh aspects the one or more transiently overexpressed genes is selected from the group consisting of OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATEl/Matel, MATE2K/Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof.
  • the disclosure provides a recombinant cell of the seventh to the eighth aspects, in which OATP2/Oatp2 is selected from the group consisting of OATPlBl* la, OATPlBl* lb, 0ATP1B1*5, 0ATP1B1* 15 and combinations thereof.
  • the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is OATPlBl*la.
  • the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is OATPlBl* lb.
  • the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is 0ATP1B1*5.
  • the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is 0ATP1B1* 15.
  • the disclosure provides a recombinant cell of the first to the thirteenth aspects, in which the one or more transiently overexpressed genes is derived individually from a human or an animal species selected from the group consisting of a mouse, a rat, a guinea pig, a dog, and a monkey.
  • the disclosure provides a recombinant cell of the first to the fourteenth aspect, in which the one or more genes encodes a solute carrier transporter protein selected from the group consisting of monkety Oatplbl, monkey Oatplb3, dog Oatplb4, rat Oatplb2, rat Oatplal, rat Oatpla4, and cominations thereof.
  • a solute carrier transporter protein selected from the group consisting of monkety Oatplbl, monkey Oatplb3, dog Oatplb4, rat Oatplb2, rat Oatplal, rat Oatpla4, and cominations thereof.
  • the disclosure provides a recombinant cell of the first to the fifteenth aspects, in which the cell is a hepatocyte.
  • the disclosure provides a recombinant cell of the first to the fifteenth aspects, in which the cell is an endothelial cell.
  • the disclosure provides a process of preparing cryopreserved transiently transfected recombinant cells, the process including: transiently transfecting cells with one or more genes encoding a drug transporter protein to provide the transiently transfected recombinant cells, and cryopreserving the transiently transfected recombinant cells within 48 hours of transfection, wherein a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein at a detectable level prior to cryopreserving the transiently transfected recombinant cells, and wherein the detectable level prior to cryopreserving is an uptake ratio of at least 5.
  • the disclosure provides a process according to the eighteenth aspect, in which transient transfection of the cells includes electroporation.
  • the disclosure provides a process according to the eighteenth or the nineteenth aspects, in which the transiently transfected recombinant cells are cryopreserved at about 24 hours to about 48 hours post transfection.
  • the disclosure provides a process according to any of the eighteenth to the twentieth aspects, in which a population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation, and the detectable level following thaw from cryopreservation is an uptake ratio of at least 5.
  • the disclosure provides a process according to any of the eighteenth to the twenty-first aspects, in which a suspended population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation within 1 hour post thaw.
  • the disclosure provides a process according to any of the eighteenth to the twenty-second aspects, in which the detectable level following thaw from cryopreservation is an uptake ratio of from about 5 to about 150.
  • the disclosure provides a process according to any of the eighteenth to the twenty-third aspects, in which a plated population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation within 4 hours post thaw.
  • the disclosure provides a process according to any of the eighteenth to the twenty-fourth aspects, in which the detectable level following thaw from cryopreservation is an uptake ratio of from about 5 to about 30.
  • Cells were cultured under standard sterile practices for cell culture, and transiently transfected using EP. Following EP, cells were assayed for protein activity both before as well as after being frozen, thawed and plated. As detailed below, cells cultured in suspension and adherent cell cultures were both successfully transiently transfected and exhibited substantial activity of the recombinant protein following thaw from cryopreservation.
  • EP of cells was executed. In short, following a determination of cell viability and cell density, cells were pelleted down by spinning at lOOg for 5 min, after which the media was aspirated and cells resuspended in 30 ml EP Buffer (available from MaxCyte, Cat. No. B201, MaxCyte Inc., Gaithersburg, MD). The cell suspension was transferred to 50 ml Falcon tubes, pelleted down as described above, and resuspended in an appropriate amount of EP Buffer to reach 100 x 10 6 cells/ml which was used as the cell stock. DNAs to be used for EP were prepared in sterile water at a final concentration of 5 mg/ml.
  • MaxCyte Cat. No. OC-400R, MaxCyte Inc.
  • the cells were carefully pipetted out and transferred into the bottom of a 125 ml shaker flask and incubated for 20 min at 37 °C with 8% C0 2 , after which pre- warmed 40 ml CD293 media was added into the shaker flask to reach cell density at 1 x 10 6 cells/ml. The cells were incubated for 30 min at 37 °C and 8% C0 2 . After 30 min recovery, cell viability and cell density were determined.
  • a portion of cells (i.e., 20 x 10 6 cells) was used for plating and the rest was cryopreserved, or all of the cells were cryopreserved. It is contemplated that recombinant cells may be cryopreserved within 48 hrs of transfection and exhibit activity of protein(s) encoded from transfected gene(s) at a detectable level following thaw from cryopreservation.
  • Cryopreserved cells were assayed for OATP1B1 activity as described below.
  • cryopreserved cells were removed from liquid nitrogen to dry ice, and then thawed in a water bath at 37 °C for about 2 min.
  • Cells were transferred into 10 ml of supplemented DMEM media (DMEM with high glucose (available from Gibco, Cat. No. 11965092, Life Technologies Corp.), supplemented with 0.1 mM non-essential amino acids (available from Gibco, Cat. No. 11140050, Life Technologies Corp.), 10% FBS (available from SAFC Biosciences, Cat. No.
  • HEK293 cells were cultured in 5 Layer Corning® CellStack® (available from Corning Inc. Life Sciences, Lowell, MA) using plating media containing DMEM (high glucose) available from Gibco Cat. No. 11965118, Life Technologies Corp. ; Penicillin-Streptomycin (10,000 units/ml) available from Gibco Cat. No. 15140-122, Life Technologies Corp. ; L-Glutamine (200 mM) available from Gibco Cat. No. 25030-081 , Life Technologies Corp. ; Sodium Pyruvate, available from Gibco Cat. No. 11360, Life Technologies Corp.; FBS available from Sigma- Aldrich Corp.
  • DMEM high glucose
  • Penicillin-Streptomycin 10,000 units/ml
  • L-Glutamine 200 mM
  • Gibco Cat. No. 25030-081 Life Technologies Corp.
  • Sodium Pyruvate available from Gibco Cat. No. 11360, Life Technologies Corp.
  • FBS available from Sigma- Aldrich Corp.
  • HEK293 cells were trypsinized, cell viability and cell number determined after which cells were passaged to fresh multilayer chamber flasks at 30-40% confluency. Cells were incubated at 37 °C with 5% C0 2 .
  • EP of cells was executed. In short, cells were harvested, cell viability and cell number determined after which cells were pelleted down by spinning at lOOg for 5 min and the media aspirated. Cells were resuspended in EP buffer and pelleted down by spinning at lOOg for 5 min, then resuspended in an appropriate amount of EP Buffer to reach 50 x 10 6 cells/ml which was used as the cell stock. DNAs to be used for EP were prepared in sterile water at a final concentration of 5 mg/ml.
  • Samples were transferred into an OC-400 or CL-2 processing assembly (available from MaxCyte, Cat. No. OC-400R and CL2-R, MaxCyte Inc.) which followed the manufacture instructions for EP of HEK cells. Following EP, the cells were carefully pipetted out and transferred into 6- well tissue culture plates and incubated for 20 min at 37 °C with 5% C0 2 , after which cells were removed and placed in a 50 ml conical tube containing pre- warmed plating media. Cell viability and cell density were determined. A portion of cells (i.e., 20 x 10 6 cells) was used for plating and the rest was cryopreserved.
  • OC-400 or CL-2 processing assembly available from MaxCyte, Cat. No. OC-400R and CL2-R, MaxCyte Inc.
  • Cryopreserved cells were assayed for OATP1B1 activity. Notably, cells were plated in the same manner described above for plating cells following EP (which had not been cryopreserved) and assayed for OATP1B1 activity (as described below) at 48 hrs following plating thereof.
  • the reaction was quickly stopped after the incubation period by aspirating substrate solution from cells then washing cells thrice with cold Uptake Buffer. Cells were then incubated with lysing solution (M-per mammalian protein extraction reagent) for 15-20 minutes while being shaken. The substrate solution was triturated and 0.4 ml of the resultant cell lysis placed in 5 ml scintillation tube with 5 ml of scintillation liquid for analysis with scintillation counter.
  • lysing solution M-per mammalian protein extraction reagent
  • cell viability dropped 1-5% after EP relative to that of the cell stock. Additionally, after cryopreservation, cell viability dropped an additional 10-15% relative to that after EP. Nonetheless, even after EP and thaw from cryopreservation, cell viability is greater than 75%.
  • FIG. 2 illustrates OATP1B1 transiently transfected cells cultured at 4 hrs, 24 hrs and 72 hrs post plating. Additionally, cell confluency at 24 hrs, 48 hrs and 72 hrs post-plating of these cells is recorded in Table 6 below.
  • the cells form a monolayer on poly-D- lysine coated Corning BiocoatTM plates achieving 80-90% confluency at 24 hrs post-plating, 90%- 100% confluency at 48 hrs post-plating.
  • FIG. 4 illustrates cells, transiently transfected with MATE1, MATE2K,
  • GFP Green Fluorescent Protein
  • Uptake activity of suspension cultured 293 cells transfected with OATP1B1 (pOATPlBl) and control vector (pCMV) were assayed at various time points following EP.
  • OATP1B1 uptake activity and uptake ratio were determined using probe substrate, estradiol-17P- glucuronide, in both fresh plated cells ("fresh”) and cryopreserved cells (“cryo”) at various timepoints post plating as detailed in Table 7 below.
  • OATP1B1 uptake activity and uptake ratio in transfected cells following thaw from cryopreservation is consistent with those in freshly plated transfected cells.
  • the highest uptake activity and uptake ratio is observed at 24 hrs post plating.
  • plating cells at a density of 0.4 x 10 6 is preferable to that of 0.2 x 10 6 as it achieves higher cell confluency and higher uptake activity.
  • OATP1B1 mediated uptake of Estradiol- 17P-glucuronide in the fresh plated transient transfected adhesion HEK293 cells is time-dependent. Notably, uptake activity and uptake ratio increased with increasing amounts of DNA used in EP. However, OATP1B1 mediated uptake of Estradiol- 17 ⁇ - glucuronide reduced at the 96 hr timepoint relative to the 48 hr timepoint. Further, as illustrated in FIG.
  • the signal to noise ratio (i.e., uptake ratio) of estradiol- 17P-glucuronide increased with the increase of amount of DNA and assay incubation time, in adhesion HEK293 cells transfected with OATP1B1 relative to empty vector at 48 hrs post EP.
  • estradiol- 17 ⁇ - glucuronide uptake in OATP1B1 transiently expressed HEK293 cells using small scale EP device and large scale EP device is consistent for both uptake activity and signal to noise ratio (i.e., uptake ratio).
  • uptake ratio 100 ⁇ g/ml DNA was used in the experiments.
  • OATP1B1 uptake activity is compared between the cells transfected using traditional lipid transfection reagent (control: lipofectamine 2000, available from Invitrogen) and EP using STX, MaxCyte Inc., Gaithersburg, MD.
  • control lipofectamine 2000, available from Invitrogen
  • STX MaxCyte Inc., Gaithersburg, MD.
  • cells transfected using EP resulted in a pronouncedly greater signal to noise ratio relative to those cells transfected with lipid transfection reagent.
  • Uptake activity of suspension cultured 293 cells transfected with OATPlBl *la, OATPlBl* lb, OATP1B3, OATl long, OATl short, OAT3, OCTl, OCT2, MATEl, MATE2K or control vector (pCMV) were assayed at 24 hrs post plating after thaw from cryopreservation.
  • the transfected cells were plated at a density of 0.4 x 10 6 cells/well in 24- well poly-D- lysine coated Corning BiocoatTM plates following EP and after thaw from cryopreservation.
  • SLC transporter uptake activity and uptake ratio were determined using probe substrates as indicated at 24 hrs post plating as detailed in Table 10 below.
  • each of the 8 cryopreserved recombinant cells formed a confluent monolayer following thawing, plating on Poly-D-Lysine plates and incubation for 24- hrs post-plating.
  • FIGS. 13A-19E and Tables 13-14 the kinetic and inhibition profiles examined in cryopreserved recombinant cells expressing a transporter protein was consistent with reported values. Specifically, as illustrated in FIGS. 13A-13C, the kinetics of PAH uptake by recombinant cells expressing OATl and inhibition profile of probenecid thereof is consistent with reported values. As illustrated in FIGS. 14A-14C, the kinetics of E3S uptake by recombinant cells expressing OAT3 and inhibition profile of probenecid thereof is consistent with reported values. As illustrated in FIGS.
  • monkey Oatplbl, dog Oatplb4 and rat Oatplb2 all show significant uptake of both E17PG and rosuvastatin, considered to be prototypical substrates.
  • monkey Oatplbl, dog Oatplb4 and rat Oatplb2 together with human O ATP IB, enable mechanistic studies to better understand, study and compare drug clearance in different species.
  • FIG. 32 Additionally, a kinetics assay was conducted of the uptake of E17PG in HEK-293 cells overexpressing monkey Oatplbl, dog Oatplb4 and rat Oatplb2 (following incubation of 5 minutes). K m and V max values were calculated according to Michaelis-Menten kinetics. The results are shown in FIG.33 and Table 15:
  • kinetic parameters K m and V max ) were determined for uptake of estradiol- 17 ⁇ -glucuronide (FIG. 35 A and FIG. 35B), rosuvastatin (FIG. 35C and FIG. 35D), and atorvastatin (FIG. 35E and FIG. 35F) in human OATPIBI* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 after a 2-minute incubation at 37°C Control cells were included for all K m and Vmax determinations. Eight substrate concentrations were used in each kinetic determination.
  • the initial uptake rate was calculated by subtracting the initial rate determined in HEK cells expressing an empty vector from those obtained in HEK-293 overexpressing SLC transporter. Each point is an average of triplicate determinations. Kinetics were determined in at least two independent experiments and the values are summarized in Figure 35B, 35D and 35F.
  • IC 50 values were determined by co-incubating the cells with 1 ⁇ substrates (E17PG or rosuvastatin) with cyclosporin A (FIG. 36A) or gemfibrozil (FIG. 36B) at a range of concentrations.
  • the uptake activity was calculated by subtracting uptake activity determined in HEK cells expressing an empty vector from those obtained in HEK overexpressing SLC transporter.
  • Each point represents the mean value of three replicates and the solid lines represented the non-linear regression fitting. The curve represents one of two independent experiments.
  • OATP1B1 single nucleotide polymorphism panel was developed to allow investigation of drug response by different genetic backgrounds in the early stage of drug development.
  • OATPlBl *la, 0ATP1B1*5, and 0ATP1B1 *15 were transiently overexpressed in HEK-293 cells and then cryopreserved.
  • the expression levels of the recombinant proteins were quantitated and normalized in the haplotype cells versus wild type cells by targeted protein quantification via liquid chromatography/tandem mass spectrometry.
  • OATP1B1 prototypical substrate estradiol-17P-glucuronide (E17PG), and statins was determined in OATPlBl* la, 0ATP1B1*5, 0ATP1B1*15, and control cells.
  • ⁇ 17 ⁇ uptake was reduced to 40% to 50% in 0ATP1B1*5 and * 15 cells compared to OATPlBl*la cells.
  • Significant decrease in uptake activity was observed in 0ATP1B1*5 and * 15 for simvastatin, atorvastatin, pitavastatin, and rosuvastatin, but not for fluvastatin.
  • the results are consistent with the clinical finding of impact of the genotypes on the pharmacokinetics of these statins.
  • the new OATP1B1 single nucleotide polymorphism panel is, therefore, a useful tool to facilitate prediction of drug disposition in populations with different genotypes.
  • TRANSPORTOCELLSTM OATPlBl *la (Cat. No. 354859), 0ATP1B1*5 (Cat. No. 354878), 0ATP1B1* 15 (Cat. No. 354879), control cells (Cat. No. 354854), cell culture media components and assay buffer were obtained from Corning Life Sciences. Radiolabeled and non-radiolabeled chemicals were obtained from American Radiolabeled Chemicals or Sigma- Aldrich.
  • FIG. 37B While viability data and Uptake Ratio data for thawed monkey Oatplbl, dog Oatplb4, and rat Oatplb2 HEK-293 cells under the same conditions are illustrated in FIG. 37C.
  • FIG. 37D illustrates the cell mophorlogy and plated 0ATP1B1*5 and 0ATP1B1*15 cells.
  • the plated cells were re-fed with or without 2 mM sodium butyrate at 3 to 4 hours after plating. Uptake assays were performed at 24 hours post-plating at 37°C for F-MTX (5 ⁇ for 10 min), E17PG (2 ⁇ for 5 min), atorvastatin (0.5 ⁇ for 2 min; no SB only), simvastatin (50 nM for 10 min), pitavastatin (0.2 ⁇ for 2 min) and fluvastatin (1.0 ⁇ for 2 min). For radiolabeled compounds, the cells were lysed in M-PER for 5 min at RT, then the cell lysates were ready for analysis.
  • FIGS. 38A-38F Each bar in FIGS. 34A-34F represents the mean and S.D. of triplicate determinations.
  • uptake of simvastatin was reduced to 36% for *5 and 0% for * 15; uptate of pitavastatin was reduced to 70% for *5 and 40% for *15; uptake of fluvastatin was reduced to 46% for *5 and less than 5% for *15.
  • NVTGFFQSF stable isotope labeled internal standard peptide
  • the samples were digested by trypsin at 37°C for 3 hours and then at 30°C overnight. At the end of digestion, the samples were mixed with an equal amount of 50/50 ACN/H 2 O containing 0.2% formic acid and centrifuged at 3,000 rpm for 20 min prior to LC- MS/MS analysis.
  • the synthetic OATP1B1 surrogate peptide (NVTGFFQSFK) was prepared in 50/50 ACN/H 2 0 containing 0.2% formic acid, then mixed with an equal amount of digestion matrix made from membrane extract prepared from Control Cells.
  • FIG. 40 is a schematic diagram of LC-MS/MS mediated targeted protein quantification.
  • HEK-293 cells transiently overexpressing OATP1B1 genetic variants, i.e.,
  • 0ATP1B1*5, and 0ATP1B1*15 were developed and validated.
  • the recombinant protein expression level in CORNING® TRANSPORTOCELLSTM 0ATP1B1*5 and *15 is consistent with wild-type OATPlBl *la cells. There was no detectable OATPIBI baseline in the parent HEK-293 cells.
  • EXPERIMENTAL PROTOCOL a suspension assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® TransportoCellsTM was developed. More specifically, the use of a centrifugation method versus a vacuum manifold for separating unreacted substrate in characterizing the activity of Organic Anion-Transporting Polypeptide 1B1 was investigated. Corning® TransportoCellsTM transiently transfected with the gene OATPlBl*la were obtained from Corning Life Sciences (Cat. No. 354859).
  • the gene OATPIBI * la was delivered into HEK293 cells via electroporation and the HEK293 cells were recovered and cryopreserved 1 hour post-electroporation.
  • the Corning® TransportoCellsTM were thawed, cultured, and harvested.
  • the Corning® TransportoCellsTM were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in appropriate amount of plating media (detailed in Table 16) at a cell density of 1 x 10 6 cells/ml.
  • the cells were cultured in T-175 Vented-Cap Culture Flasks with Poly-D- Lysine (hereinafter, "PDL”; available from Corning Life Sciences, Cat. No. 354539) with plating medium for 48 hours at 37 °C and 8% C0 2 .
  • the plating medium is detailed in Table 16. After 24 hours, sodium butyrate (obtained from Sigma) was added to the cells to reach final 5mM. After 48 hours, the cells were rinsed twice with Phosphate-Buffered Saline (hereinafter, "PBS", obtained from Corning).
  • PBS Phosphate-Buffered Saline
  • HBSS Hank's Balanced Salt Solution
  • a centrifugation method was investigated to separate excess substrate and cells.
  • the resuspended Corning® TransportoCellsTM were aliquotted (200 ⁇ per well at a density of 600k cells/well) into either a Corning® 96 Well Clear Round Bottom TC-Treated Microplate (available from Corning Life Sciences, Cat. No. 3799) or a Corning® 96 Well Clear V-Bottom TC-Treated Microplate (available from Corning Life Sciences, Cat. No. 3894).
  • Organic Anion-Transporting Polypeptide 1B1 was characterized by initiating a reaction by adding either prewarmed 50 ⁇ 5X substrate solution (50 ⁇ HBSS buffer containing 25 ⁇ Estradiol 17- ⁇ Glucuronide, hereinafter, "E17PG”; obtained from Sigma) or by adding fluorescent 50 ⁇ 5X substrate solution (50 ⁇ HBSS buffer containing either 25 ⁇ fluorescein methotrexate, hereinafter, "FMTX”; obtained from Life Technologies or 25 ⁇ 8- fluorescein-cAMP, hereinafter, "8-FcA”; obtained from BIOLOG Life Sciences). The cells were then incubated for 10 minutes at 37 °C.
  • prewarmed 50 ⁇ 5X substrate solution 50 ⁇ HBSS buffer containing 25 ⁇ Estradiol 17- ⁇ Glucuronide, hereinafter, "E17PG”; obtained from Sigma
  • fluorescent 50 ⁇ 5X substrate solution 50 ⁇ HBSS buffer containing either 25 ⁇ fluorescein methotre
  • the reaction was stopped by adding ice cold HBSS buffer (50 ⁇ ) to the cells and placing the microplates on ice. Then, the microplates were centrifuged at 3000 g for 1 minute at 4 °C. The supernatant was aspirated and the cells were washed three times with 200uL cold HBSS.
  • the cells contacted with the non radioactive substrate solution containing E17PG were lysed with 80% Acetonitrile lysis buffer (made inhouse).
  • the cells contacted with the fluorescent substrate solution containing FMTX or 8-FcA were lysed with M-per protein lysis buffer (200 ⁇ ⁇ , obtained from Thermo Scientific). The cell lysis was then subjected to the appropriate protein analysis and/or fluorescence analysis to characterize the activity of Organic Anion-Transporting Polypeptide 1B1.
  • Organic Anion-Transporting Polypeptide 1B1 was characterized by initiating a reaction by adding either prewarmed 50 ⁇ 5X substrate solution (50 ⁇ HBSS buffer containing 25 ⁇ E17PG; obtained from Sigma) or by adding 50 ⁇ fluorescent 5X substrate solution (50 ⁇ HBSS buffer containing 25 ⁇ FMTX; obtained from Life Technologes; or 25 ⁇ 8-FcA; obtained from BIOLOG Life Sciences). The cells were then incubated for 10 minutes at 37 °C. After the incubation time, the reaction was stopped by adding ice cold 50 ⁇ HBSS buffer and placing the microplates on ice.
  • Thick Glass Fiber Filter available from Corning Life Sciences, Cat. No. 3511
  • a vacuum was applied.
  • substrate solution flows through the filter plate and is collected in the receiver plate while insoluble particles, such as, e.g. , membrane vesicles or cells, are trapped on the filter plate.
  • the cells trapped on the filter plate were washed three times with cold HBSS.
  • the cells contacted with the non radioactive substrate solution containing E17PG were lysed with 80% Acetonitrile lysis buffer ( made inhouse).
  • the cells contacted with the fluorescent substrate solution containing FMTX or 8-FcA were lysed with M-per protein lysis buffer (200 ⁇ ⁇ , obtained from Thermo Scientific).
  • the cell lysis was collected into a new receiver plate by vacuum.
  • the cell lysis was then subjected to the appropriate protein analysis and/or fluorescence analysis to characterize the activity of Organic Anion-Transporting Polypeptide 1B1.
  • a positive control was provided via an adherent assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® Transporto CellsTM.
  • Corning® TransportoCellsTM transiently transfected with the gene OATPlBl * la were obtained from Corning Life Sciences (Cat. No. 354859).
  • the Corning® TransportoCellsTM were thawed, cultured, and harvested.
  • the Corning® TransportoCellsTM were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in plating media (obtained from Table 16) at a cell density of 1 x 10 6 cells/ml.
  • the cells were cultured via plating in a 24- well PDL- Treated Plate (cell density of 250K cells/well; obtained from Corning Life Sciences) with plating medium for 48 hours at 37 °C and 8% C0 2 .
  • the plating medium is detailed in Table 16. After 24 hours, cells were refed by 400uL plating media supplemented with 5mM sodium butyrate (obtained from Sigma).
  • FIG. 21 An appropriate suspension assay protocol employing the centrifugation method is depicted in FIG. 21.
  • EXPERIMENTAL PROTOCOL a suspension assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® TransportoCellsTM was further developed. More specifically, the effect of culturing conditions and cell density per well in the assay on the activity of Organic Anion-Transporting Polypeptide 1B1 in Corning® TransportoCellsTM was investigated. With regard to culturing conditions, the effect of shaker flask culturing, and T-flask culturing on the activity of Organic Anion- Transporting Polypeptide 1B1 in Corning® TransportoCellsTM was investigated.
  • Corning® TransportoCellsTM transiently transfected with the gene OATPlBl*la were obtained from Corning Life Sciences (Cat. No. 354859). With regard to cell density, the effect of cell density in the Suspension Assay on the activity of Organic Anion-Transporting Polypeptide 1B1 in Corning® TransportoCellsTM was investigated. In order to obtain suitable expression of the Organic Anion-Transporting Polypeptide 1B1 encoded by OATPlBl*la, the Corning® TransportoCellsTM were thawed, cultured via shaker flask culturing, or T-flask culturing, and harvested.
  • the Corning® TransportoCellsTM were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in plating media (obtained from Table 16) at a cell density of 1 x 10 6 cells/ml.
  • the cells were resuspended after centrifugation in HBSS (obtained from Corning) and aliquotted into a Corning® 96 Well Clear V-Bottom TC-Treated Microplate (obtained from Corning Life Sciences, Cat. No. 3894) to a final cell density of 100K cells/well, 200K cells/well, or 300K cells/well. The cells were then assayed in the microplate to characterize the activity of Organic Anion-Transporting Polypeptide 1B1 following the centrifugation method described in Example 2.
  • the cells were rinsed twice with PBS (obtained from Corning).
  • the cells cultured in the BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap were harvested with 0.05% Trypsin (obtained from Sigma). Cell viability and cell number were determined, as previously described.
  • the cells were then washed once with HBSS buffer (with Ca 2+ and Mg 2+ , obtained from Corning).
  • the cells cultured in the Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap were harvested with Dulbecco's PBS (hereinafter, "D-PBS"; obtained from Corning). Cell viability and cell number were determined, as previously described.
  • D-PBS Dulbecco's PBS
  • HBSS buffer with Ca 2+ and Mg 2+ , obtained from Corning.
  • the cells were resuspended after harvesting in appropriate volume of HBSS to reach 1 x 10 6 cells/ml, and aliquotted into a Corning® 96 Well Clear V-Bottom TC-Treated Microplate (obtained from Corning Life Sciences, Cat. No. 3894) to a final cell density of 100K cells/well, 200K cells/well, or 300K cells/well.
  • the cells were then assayed in the microplate to characterize the activity of Organic Anion-Transporting Polypeptide 1B1 following the centrifugation method described in Example 2. [00254] RESULTS. AS shown in FIG.
  • EXPEP MENTAL PROTOCOL EXPEP MENTAL PROTOCOL.
  • Assay-Ready TransportoCells were developed. Additionally, the effect of culturing conditions on the activity of Organic Anion-Transporting Polypeptide 1B1 in TransportoCells was investigated. With regard to culturing conditions, the effect of culturing media, culturing vessel, culturing time, and the addition of sodium butyrate to a final concentration of 5 mM during culture on the activity of Organic Anion-Transporting Polypeptide 1B1 was investigated. [00257] HEK293 cells (obtained from Life Technologies) were cultured in Corning® erlenmeyer shaker flasks(available from Corning Inc.
  • CD293 media life tech
  • 4mM L-Glutamine Gibco
  • Penicillin-Streptomycin 10,000 units/ml; available from Gibco Cat. No. 15140-122, Life Technologies Corp
  • HEK293 cells viability and cell number were determined, as previously described. Then, the cells were centrifuged down. The cell pellet was resuspended in supplemented CD293 media to a final 0.7 x 10 6 cells/ml in Corning erlenmeyer shaker flasks. The cells were incubated at 37 °C with 8% C0 2 for 24 hours.
  • HEK293 cells were transiently transfected and recovered using the same EP protocol as described in Example 1. In short, the cells were harvested, cell viability and cell number determined after which cells were pelleted down by spinning at lOOg for 5 min and the media aspirated. Cells were resuspended in EP buffer (obtained from Maxcyte), pelleted down by spinning at 1 OOg for 5 min, then resuspended in an appropriate amount of EP Buffer (obtained from Maxcyte) to reach a cell density of 100 x 10 6 cells/ml (which was used as the cell stock).
  • EP buffer obtained from Maxcyte
  • OATPlBl*la DNA to be used for EP was prepared in sterile water at a final concentration of 5 mg/ml.
  • 0.4 ml of cell stock and OATPlBl*la DNA was mixed in a sterile 1.5 ml eppendorf tube resulting in a final concentration of 300 ⁇ g/ml OATPlBl *la DNA and cell density of 40 x 10 6 cells per sample.
  • 10 ml of cell stock and OATPlBl*la DNA was placed in a 50 ml sterile conical tube resulting in a final concentration of 300 ⁇ OATPlBl*la DNA.
  • the cells were either cultured in the Erlenmeyer shaker flasks (i.e., cultured in suspension), or were transferred to Corning® BioCoatTM PDL 175 cm 2 Rectangular Straight Neck Cell Culture Flask with Vented Cap (available from Corning Life Sciences, Cat. No. 354539; hereinafter, "PDL-Treated T-175 Flasks”) or Falcon® 175 cm 2 Rectangular Straight Neck Cell Culture Flask with Vented Cap (available from Corning life Sciences, Cat. No. 353112; hereinafter, "TC- treated T-175 Flasks”) (i.e., cultured in attached form) for culturing.
  • the culturing conditions employed i.e., the culturing media, culturing vessel, culturing time, and whether sodium butyrate was added) are detailed in Tables 19-20.
  • the Positive and Negative Controls employed are also detailed in Table 19.
  • the cells cultured in the Erlenmeyer flasks were harvested via centrifugation at lOOg for 5-10min, the cells cultured in the PDL- Treated T- 175 Flasks were harvested with 0.05% Trypsin (obtained from Sigma), and the cells cultured in the TC-Treated T-175 Flasks were harvested with D-PBS (obtained from Corning). The cells were counted and viability was assessed. The cells were then cryopreserved.
  • cryopreservation cells were pelleted down and then resuspended in freshly prepared ice-cold freezing media (9 parts culturing medium and 1 part DMSO which was syringe filtered to sterilize, obtained from Sigma) at a density of 10 x 10 6 cells/ml. Cryo vials were filled with 1 ml of this cell suspension, and placed on ice-cold Mr. Frosty freezing container (available from Thermal Scientific) stored in -80 °C freezer overnight after which the vials were stored in liquid nitrogen. [00261] Following cryopreservation, the cells were thawed, counted, and the activity of
  • a control was provided via an adherent assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® TransportoCellsTM.
  • Corning® TransportoCellsTM transiently transfected with the gene OATPlBl*la were obtained from Corning Life Sciences (Cat. No. 354859).
  • the Corning® TransportoCellsTM were thawed, cultured, and harvested.
  • the Corning® TransportoCellsTM were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in appropriate volume of HBSS buffer (with Ca 2+ and Mg 2+ , obtained from Corning) at a density of 1 x 10 6 cells/ml. The cells were then assayed in the microplate to characterize the activity of Organic Anion- Transporting Polypeptide 1B1 following the centrifugation method described in Example 2.
  • Flasks and cells cultured in PDL- Treated T-175 Flasks exhibited a viability of -90% and good cell doubling at harvest.
  • Treated T-175 Flasks, TC-Treated T-175 Flasks with plating media, and TC-Treated T-175 Flasks with CD293 media exhibited an uptake ratio of > 50. Additionally, the cells cultured in the attached form (i.e., PDL-Treated T-175 Flasks and TC-Treated T-175 Flasks) exhibited a 2- fold higher uptake activity relative to the cells cultured in suspension (i.e., Erlenmeyer Shaker Flasks). For all conditions, CV was within 15%.
  • FIG. 25A cell doubling increased from 24 hours to 72 hours culturing time for cells cultured in Erlenmeyer Shaker Flasks and for cells cultured in PDL- Treated T-175 Flasks. Additionally, as shown in FIG. 25B, uptake activity immediately post- thaw peaked at 48 hours. Without being bound to the theory, it is believed that culturing time may be adjusted based on the time frame for performing the activity assay. As shown in FIG. 26, uptake activity was boosted by from about 3 fold to 10 fold in cells cultured with 5 mM sodium butyrate as compared to cells cultured without sodium butyrate.
  • EXPERIMENTAL PROTOCOL EXPERIMENTAL PROTOCOL.
  • assays for characterizing the activity of a drug transporter protein in cryopreserved, Assay-Ready TransportoCells were further developed. More specifically, the timing of performing a suspension assay versus a plating assay in characterizing the activity of Organic Anion- Transporting Polypeptide 1B1 in Assay-Ready TransportoCells was investigated. Cryopreserved, Assay-Ready TransportoCells were manufactured as in Example 4.
  • cryopreserved, Assay-Ready TransportoCells were cultured in Erlenmeyer shaker flasks, PDL-Treated T-175 Flasks, or TC- treated T-175 Flasks with plating media or with CD293 media.
  • the assay control and negative control were as described in Example 4.
  • cells assayed for activity via suspension assays exhibited higher uptake ratio relative to cells assayed for activity at 4 hours post-thaw via plate assay. Specifically, the uptake ratio of cells assayed for activity via suspension assays was from about 50 to 150. In contrast, the uptake ratio of cells assayed for activity at 4 hours post-thaw via plate assay was from about 10 to about 30.
  • EXPERIMENTAL PROTOCOL EXPERIMENTAL PROTOCOL.
  • Cryopreserved, Assay-Ready TransportoCells were made as in Example 4.
  • the cryopreserved, Assay-Ready TransportoCells were cultured in Erlenmeyer shaker flasks, PDL-Treated T-175 Flasks, or TC -treated T-175 Flasks with plating media or with CD293 media.
  • the assay control and negative control were as described in Example 4.
  • cryopreserved, Assay-Ready TransportoCells were thawed in HBSS buffer (obtained from Corning), pelleted down, and resuspended in HBSS. Viability was assessed and cells were counted.
  • HBSS buffer obtained from Corning
  • Assay-Ready TransportoCells were thawed in plating media (obtained from Table 16), pelleted down, and resuspended in plating media. Cell viability and cell number were determined, as previously described.

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Abstract

Recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein, wherein the recombinant cell is cryopreserved and activity of the drug transporter protein is detectable in a population of the recombinant cells prior to cryopreservation at an uptake ratio of at least 5. Processes of preparing cryopreserved transiently transfected recombinant cells, including transiently transfecting cells with one or more genes encoding a drug transporter protein and cryopreserving the transiently transfected recombinant cells within 48 hours of transfection. A population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein at a detectable level prior to cryopreserving and the detectable level is an uptake ratio of at least 5.

Description

ASSAY-READY RECOMBINANT CELLS TRANSIENTLY OVEREXPRESSING GENES ENCODING DRUG TRANSPORTER PROTEINS AND/OR DRUG
METABOLIZING ENZYMES
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit of priority under 35 U.S. C. § 120 of U.S. Application No.15/269,045 filed on September 19, 2016, which is a continuation in part of U.S. Application No. 15/163,218, filed on May 24, 2016, which is a continuation application of US Application No. 14/972,012, filed on December 16, 2015, the contents of each are relied upon and incorporated herein by reference in their entirety.
BACKGROUND
Field
[0002] The present disclosure relates to assay-ready preparations of recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein and/or a drug metabolizing enzyme, to processes of preparing cryopreserved, transiently transfected recombinant cells, and to suspension assays for assessing activity of drug transporter proteins and/or a drug metabolizing enzymes of recombinant cells.
Technical Background
[0003] Drug development is a costly and time consuming process of identifying, characterizing, and proving the safety and efficacy of drug candidates. One reason is that drug candidates must satisfy certain safety and efficacy criteria established by government agencies, such as, e.g., the U.S. Food and Drug Administration and European Medicines Agency, to market and sell new drugs. To study the safety of drugs, assays are conducted to screen drug candidates to determine whether they have an effect on drug transporter proteins and/or drug metabolizing enzymes (such as, e.g., whether the drug candidates are substrates or inhibitors thereof). This is because drug transporter proteins and/or drug metabolizing enzymes have an established role in the absorption, distribution, metabolism, and/or elimination of drugs. Specifically, drug candidates (or metabolites of drug candidates) that significantly affect drug transporter proteins and/or drug metabolizing enzymes may also produce undesirable toxicity and/or drug-drug interactions, reducing the safety profile thereof.
[0004] Another reason that drug development is costly and time consuming is that drug transporters are genetically polymorphic, which is one of the major causes of differences in drug efficacy, safety, and pharmacokinetic variation in different individuals and populations. Therefore, the importance of genetic variations in drug transporters for drug disposition and response has been increasingly recognized in the past decade. The drug transporter organic anion transporting polypeptide 1B1 (OATPIBI) is genetically polymorphic and plays a major role in hepatic uptake of a variety of clinically important drugs. Two common single nucleotide polymorphisms (c.388A>G and c.521T>C) have been reported in OATPIBI wth altered functionality. Compared to the wild-type allele 0ATP1B1 *1 (c.388A and C.521T), the two haplotypes 0ATP1B1*5 (c.388A and C.521C) an 0ATP1B1 *15 (c.388G ad C.521C) are consistently associated with reduced transporting activity. For example, and with respect to the *15 haplotype, the effect on drug disposition was evidenced by increased statin AUC ("area under the curve) in individuals carrying the 521 CC genotype (Niemi M, Pharmacol Rev. (63): 157 (2011).
[0005] Additionally, the frequencies of OATPIBI genetic variants show marked ethnic differences. Predicting the pharmacokinetic effect of these genetic variants on drug disposition is critical for understanding the inter-individual variations in drug efficiary and safety.
[0006] Although cryopreserved cell lines transiently expressing a gene encoding a drug transporter protein and/or drug metabolizing enzyme are available for drug screening assays, such as, e.g., Corning® Transporto Cells™ available from Corning Life Sciences (Bedford, MA), such cryopreserved recombinant cells are not assay-ready. Rather, such cryopreserved recombinant cells require users to thaw, plate, and culture the recombinant cells prior to performing a drug screening assay. Thawing, plating, and culturing the recombinant cells may take a user at least 24 hours to complete, increasing both the cost and time required to perform critical drug screening assays.
[0007] Accordingly, ongoing needs exist for assay-ready recombinant cells transiently expressing genes encoding a drug transporter protein and/or a drug metabolizing enzyme. SUMMARY
[0008] In embodiments, a recombinant cell including one or more transiently transfected overexpressed genes encoding a drug transporter protein is disclosed. The recombinant cell is cryopreserved and activity of the drug transporter protein is detectable in a population of the recombinant cells prior to cryopreservation at an uptake ratio of at least 5.
[0009] In other embodiments, a process of preparing cryopreserved transiently transfected recombinant cells is disclosed. The process includes transiently transfecting cells with one or more genes encoding a drug transporter protein to provide the transiently transfected recombinant cells, and cryopreserving the transiently transfected recombinant cells within 48 hours of transfection. A population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein at a detectable level prior to cryopreserving the transiently transfected recombinant cells. The detectable level prior to cryopreserving is an uptake ratio of at least 5.
[0010] It is to be understood that both the foregoing general description and the following detailed description describe various embodiments and are intended to provide an overview or framework for understanding the nature and character of the claimed subject matter. The accompanying drawings are included to provide a further understanding of the various embodiments, and are incorporated into and constitute a part of this specification. The drawings illustrate the various embodiments described herein, and together with the description serve to explain the principles and operations of the claimed subject matter.
BRIEF DESCRIPTION OF THE DRAWINGS
[0011] FIG. 1 is a graph of the percentage of viable cells from cell stock, cells after electroporation (hereinafter, "EP") and cells after thaw from cryopreservation for FreeStyle™ 293-F (hereinafter, "FS293") cells and 293-F cells grown in suspension.
[0012] FIG. 2 are images of transfected cells 4 hrs (A), 24 hrs (B) and 48 hrs (C) after plating following thaw from cryopreservation. [0013] FIG. 3 are images of 293-F cells transfected with OATPlBl expression plasmid plated at (A) 0.4 x 106 viable cells per well and (B) 0.2 x 106 viable cells per well in 24- well poly-D-lysine coated plates and cultured in plating media at 24 hrs post-plating (following thaw from cryopreservation).
[0014] FIG. 4 are images of 293-F cells transfected with MATE1, MATE2K OATP1B3, long isoform OAT1 (full length cDNA with 563 amino acids; hereinafter, "OATl long"), short isoform OATl (missing 13 amino acid at C-terminus 522-534, with 550 amino acids; hereinafter, "OATl short"), OAT3, and pCMV vector plated at 0.4 x 106 cells per well in 24- well poly-D-lysine coated plates at 24 hrs post-plating (following thaw from cryopreservation).
[0015] FIG. 5 are fluorescence images of adhered HEK293 cells transfected with 50 μg/ml, 100 μg/ml or 200 μg/ml green fluorescent protein (GFP) 24 hrs (A) and 48 hrs (B) following EP.
[0016] FIG. 6 is a graph of the percentage of viable cells following EP of adhered HEK293 cells using varying amounts of DNA.
[0017] FIG. 7A is a graph of estradiol-17P-glucuronide (i.e., E17PG) uptake activity following various incubation times in adhered HEK293 cells transfected with varying amounts of DNA (i.e., 0, 50 μg/ml, 100 μg/ml, 200 μg/ml or 400 μg/ml OATP2/OATP1B1) at 48 hrs post EP.
[0018] FIG. 7B is a graph of estradiol-17P-glucuronide (i.e., E17PG) uptake activity following various incubation times in adhered HEK293 cells transfected with varying amounts of DNA (i.e., 0, 50 μg/ml, 100 μg/ml, 200 μg/ml or 400 μg/ml OATP2/OATP1B1) at 96 hrs post EP.
[0019] FIG. 8 is a graph of signal to noise ratio of estradiol-17P-glucuronide (i.e., E17PG) uptake following various incubation times in adhered HEK293 cells transfected with varying amounts of DNA (i.e., 0, 50 μg/ml, 100 μg/ml, 200 μg/ml or 400 μg/ml OATP2/OATP1B1) at 48 hrs post EP.
[0020] FIG. 9 is a graph of estradiol- 17P-glucuronide (i.e., E17PG) uptake activity in adhered HEK293 cells transfected with either OATP2/OATP1B1 using a small scale EP device (OC400), OATP2/OATP1B1 using a large scale EP device (CL2), or an empty vector control.
[0021] FIG. 10 is a graph of signal to noise ratio of estradiol- 17P-glucuronide (i.e., E17PG) uptake following various incubation times in adhered HEK293 cells transfected with OATPIBI gene using either "Control" (i.e., traditional lipid transfection reagent (lipofectamine 2000, available from Invitrogen)) or STX, MaxCyte scalable EP device.
[0022] FIG. 11 is a graph of signal to noise ratio of estradiol- 17P-glucuronide (i.e., E17PG) uptake following various incubation times in adhered HEK293 cells transfected with OATPIBI that are freshly plated or plated following thaw from cryopreservation.
[0023] FIG. 12 are images of HEK293 cells transfected with OATPIBI * la (Gene Accession No. NM_006446.4), OATPIBI * lb (Gene Accession No. NM_006446.3), OATP1B3, pCMV vector, long isoform OATl (full length cDNA with 563 amino acids), OAT3, OCTl or OCT2 using MaxCyte scalable EP device and scale-up process followed by cryopreservation, thawing, plating on Poly-D-Lysine plates and incubation for 24 hrs post-plating.
[0024] FIG. 13 A is a graph depicting results of a time-dependent assay of p- Amino hippuric acid (i.e., PAH) (prototypical substrate for OATl) uptake in HEK293 cells overexpressing OATl or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with PAH at a concentration of 3 μΜ.
[0025] FIG. 13B is a graph depicting results of a kinetic assay whereby uptake of PAH at a concentration in the range of 3 to 200 μΜ was measured in HEK293 cells overexpressing OATl following incubation for 5 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
[0026] FIG. 13C is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OATl were incubated with PAH at a concentration of 15 μΜ and probenecid (i.e., an OATl inhibitor) at a concentration in the range of 0 - 300 μΜ for 5 min. IC50, calculated using Sigma-plot, is shown as insert in the graph.
[0027] FIG. 14A is a graph depicting results of a time-dependent assay of Estrone-3 -sulfate (i.e., E3S) (prototypical substrate for OAT3) uptake in HEK293 cells overexpressing OAT3 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with E3S at a concentration of 1 μΜ.
[0028] FIG. 14B is a graph depicting results of a kinetic assay whereby uptake of E3S at a concentration in the range of 0.5 to 32 μΜ was measured in HEK293 cells overexpressing OAT3 following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
[0029] FIG. 14C is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OAT3 were incubated with E3S at a concentration of 4 μΜ and probenecid {i.e., an OAT3 inhibitor) at a concentration in the range of 0 - 300 μΜ for 5 min. IC50, calculated using Sigma-plot, is shown as insert in the graph.
[0030] FIG. 15A is a graph depicting results of a time-dependent assay of TEA {i.e., a prototypical substrate for OCTl) uptake in HEK293 cells overexpressing OCTl or pCMV vector following various incubation times {i.e., 1, 2, 5, 10 and 15 min.) with TEA at a concentration of 31 μΜ.
[0031] FIG. 15B is a graph depicting results of a time- dependent assay of metformin {i.e., a prototypical substrate for OCTl) uptake in HEK293 cells overexpressing OCTl or pCMV vector following various incubation times {i.e., 1, 2, 5, 10 and 15 min.) with metformin at a concentration of 3.8 μΜ.
[0032] FIG. 15C is a graph depicting results of a concentration-dependent assay whereby uptake of TEA at a concentration of 1, 10 and 100 μΜ was measured in HEK293 cells overexpressing OCTl or pCMV vector following incubation for 10 min.
[0033] FIG. 15D is a graph depicting results of a concentration-dependent assay whereby uptake of metformin at a concentration of 0.1, 1 and 10 μΜ was measured in HEK293 cells overexpressing OCTl or pCMV vector following incubation for 10 min.
[0034] FIG. 15E is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OCTl were incubated with TEA and OCTl inhibitor {i.e., quinidine, verapamil or decynium-22) at various concentrations in the range of 0.1 - 500 μΜ for 10 min.
[0035] FIG. 15F is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OCTl were incubated with metformin at a concentration of 3.8 μΜ and OCTl inhibitor cimetidine at various concentrations in the range of 4 μΜ to 3 mM for 10 min.
[0036] FIG. 16A is a graph depicting results of a time-dependent assay of TEA {i.e., a prototypical substrate for OCT2) uptake in HEK293 cells overexpressing OCT2 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with TEA at a concentration of 31 μΜ.
[0037] FIG. 16B is a graph depicting results of a time-dependent assay of metformin (prototypical substrate for OCT2) uptake in HEK293 cells overexpressing OCT2 or pCMV vector following various incubation times (i.e. , 1, 2, 5, 10 and 15 min.) with metformin at a concentration of 3.8 μΜ.
[0038] FIG. 16C is a graph depicting results of a concentration-dependent assay whereby uptake of TEA at a concentration of 1, 10 and 100 μΜ was measured in HEK293 cells overexpressing OCT2 or pCMV vector following incubation for 10 min.
[0039] FIG. 16D is a graph depicting results of a concentration-dependent assay whereby uptake of metformin at a concentration of 0.1, 1 and 10 μΜ was measured in HEK293 cells overexpressing OCT2 or pCMV vector following incubation for 10 min.
[0040] FIG. 16E is a graph depicting results of an inhibition assay whereby HEK293 cells overexpressing OCT2 were incubated with metformin at a concentration of 3.8 μΜ and OCT2 inhibitor cimetidine at a concentration in the range of 4 μΜ to 3 mM for 10 min. IC50, calculated using Sigma-plot, is shown as insert in the graph.
[0041] FIG. 17A is a graph depicting results of a time-dependent assay of estradiol- 17 β- glucuronide (i.e. , E17PG) uptake in HEK293 cells overexpressing OATPlBl * la or pCMV vector following various incubation times (i.e. , 1, 2, 5, 10 and 15 min.) with E17PG at a concentration of 1 μΜ.
[0042] FIG. 17B is a graph depicting results of a time-dependent assay of estrone-3 -sulfate (i.e., E3S) uptake in HEK293 cells overexpressing OATPlBl * la or pCMV vector following various incubation times (i.e. , 1 , 2, 5, 10 and 15 min.) with E3S at a concentration of 1 μΜ.
[0043] FIG. 17C is a graph depicting results of a time-dependent assay of rosuvastatin uptake in HEK293 cells overexpressing OATPlBl * la or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with rosuvastatin at a concentration of 1 μΜ.
[0044] FIG. 17D is a graph depicting results of a concentration-dependent assay whereby uptake of E17PG at a concentration in the range of 0.25 to 40 μΜ was measured in HEK293 cells overexpressing OATPlBl*la following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
[0045] FIG. 17E is a graph depicting results of a concentration-dependent assay whereby uptake of rosuvastatin at a concentration in the range of 0.78 to 50 μΜ was measured in HEK293 cells overexpressing OATPlBl*la following incubation for 5 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
[0046] FIG. 17F is a graph depicting results of a concentration-dependent assay whereby uptake of E17PG at a concentration of 1 μΜ was measured in HEK293 cells overexpressing OATPlBl* la following incubation with inhibitor cyclosporin A at a concentration in the range of 0.04 to 30 μΜ for 5 min. IC50, calculated using Sigma-plot, is shown as insert in the graph.
[0047] FIG. 18A is a graph depicting results of a time-dependent assay of E17PG uptake in HEK293 cells overexpressing OATPlBl*lb or pCMV vector following various incubation times {i.e., 1, 2, 5, 10 and 15 min.) with E17PG at a concentration of 1 μΜ.
[0048] FIG. 18B is a graph depicting results of a time-dependent assay of E3S uptake in HEK293 cells overexpressing OATPlBl*lb or pCMV vector following various incubation times {i.e., 1, 2, 5, 10 and 15 min.) with E3S at a concentration of 1 μΜ.
[0049] FIG. 18C is a graph depicting results of a time-dependent assay of rosuvastatin uptake in HEK293 cells overexpressing OATPlBl*lb or pCMV vector following various incubation times {i.e., 1, 2, 5, 10 and 15 min.) with rosuvastatin at a concentration of 1 μΜ.
[0050] FIG. 18D is a graph depicting results of a concentration-dependent assay whereby uptake of E17PG at a concentration in the range of 0.25 to 40 μΜ was measured in HEK293 cells overexpressing OATPlBl*lb following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
[0051] FIG. 18E is a graph depicting results of an inhibition assay whereby uptake of E17PG at a concentration of 1 μΜ was measured in HEK293 cells overexpressing OATPlBl*lb following incubation with inhibitor cyclosporin A at a concentration in the range of 0.04 to 30 μΜ for 5 min. IC50, calculated using Sigma-plot, is shown as insert in the graph. [0052] FIG. 19A is a graph depicting results of a time-dependent assay of cholecystokinin (i.e., CCK-8) uptake in HEK293 cells overexpressing OATP1B3 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with CCK-8 at a concentration of 1 μΜ.
[0053] FIG. 19B is a graph depicting results of a time-dependent assay of E17PG uptake in HEK293 cells overexpressing OATP1B3 or pCMV vector following various incubation times (i.e., 1, 2, 5, 10 and 15 min.) with E17PG at a concentration of 1 μΜ.
[0054] FIG. 19C is a graph depicting results of a concentration-dependent assay whereby uptake of CCK-8 at a concentration in the range of 0.5 to 20 μΜ was measured in HEK293 cells overexpressing OATP1B3 following incubation for 1 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
[0055] FIG. 19D is a graph depicting results of a concentration-dependent assay whereby uptake of rosuvastatin at a concentration in the range of 0.78 to 50 μΜ was measured in HEK293 cells overexpressing OATP1B3 following incubation for 5 min. Km and Vmax, calculated using Sigma-plot, are shown as insert in the graph.
[0056] FIG. 19E is a graph depicting results of an inhibition assay whereby uptake of CCK-8 at a concentration of 1 μΜ was measured in HEK293 cells overexpressing OATP1B3 following incubation with inhibitor cyclosporin A at a concentration in the range of 0.04 to 30 μΜ for 2 min. IC50, calculated using Sigma-plot, is shown as insert in the graph.
[0057] FIG. 20 is a flow chart of a suspension assay employing a centrifugation method or a vacuum manifold for characterizing activity of a drug transporter protein according to embodiments of this disclosure.
[0058] FIG. 21 is a flow chart of a suitable suspension assay employing a centrifugation method for characterizing activity of a drug transporter protein according to embodiments of this disclosure.
[0059] FIG. 22A is a bar graph of Corning® TransportoCells™ cells cultured in Erlenmeyer shaker flasks (i.e., Shaker Flask), Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL-T175) or Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC-T175) with respect to Viability at Harvest (%)·
[0060] FIG. 22B is a bar graph of Corning® TransportoCells™ cells cultured in Erlenmeyer shaker flasks (i.e., Shaker Flask), Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL-T175) or Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC-T175) with respect to Average Fold of Cell Doubling (X).
[0061] FIG. 23A is a graph of Cell Density Per Well (K/well) of Corning® TransportoCells™ cells cultured in Erlenmeyer shaker flasks (i.e., SF), Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL), or Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC) with respect to Uptake Activity (pmol/mg/min).
[0062] FIG. 23B is a graph of Cell Density Per Well (K/well) of Corning® TransportoCells™ cells cultured in Erlenmeyer shaker flasks (i.e., SF), Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., PDL), or Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., TC) with respect to Uptake Ratio. The positive control (cells cultured in Erlenmeyer shaker flask, 300K/well) in this experiment exhibited an uptake ratio (i.e., S/N) of 24 with substrate.
[0063] FIG. 24 is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), negative control cells (i.e., Neg Control), or HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD shaker flask), Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: Plating PDL), Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Attached: Plating TC), or Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Attached: CD/FBS TC) for 48 hours and supplemented with sodium butyrate with respect to Uptake Activity (pmol/mg/min).
[0064] FIG. 25A is a graph of Culture Time (hours) of HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD Shaker Flask) or in Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: PM PDL) supplemented with sodium butyrate with respect to Cell Doubling.
[0065] FIG. 25B is a graph of Culture Time (hours) of HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD Shaker Flask) or in Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: PM PDL) supplemented with sodium butyrate with respect to Uptake Activity (pmol/mg/min).
[0066] FIG. 26 is a bar graph of HEK293 cells cultured in Erlenmeyer shaker flasks (i.e., Susp: CD Shaker Flask) and of HEK293 cells cultured in Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: PM PDL) with and without the addition of sodium butyrate 24 hours prior to harvest with respect to Uptake Activity Immediately Post-Thawing (pmol/mg/min).
[0067] FIG. 27A is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), negative control cells (i.e., Neg Control), HEK293 cells cultured in Erlenmeyer Shaker Flasks (i.e., Susp: CD shaker flask), in Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: Plating PDL), in Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Attached: Plating TC), or in Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Attached: CD/FBS TC) with respect to Uptake Activity (pmol/mg/min), wherein activity was assessed via Suspension Assay at 0 hours post-thaw, Suspension Assay at 1 hour post-thaw, or Plate Assay at 4 hours post-thaw.
[0068] FIG. 27B shows an image of confluency of HEK293 cells at the 4-hour plate assay, wherein the cells were cultured in Erlenmeyer Shaker Flasks.
[0069] FIG. 27C shows an image of concluency of HEK 293 cells at the 4-hour plate assay, wherein the cells were cultured in Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap.
[0070] FIG. 28 is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), HEK293 cells cultured in Erlenmeyer Shaker Flasks (i.e., Susp: CD shaker flask), in Corning® BioCoat1™ PDL 175 cm Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Attached: Plating PDL), in Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Attached: Plating TC), or in Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Attached: CD/FBS TC) with respect to Uptake Ratio, wherein activity was assessed via Suspension Assay at 0 hours post-thaw, Suspension Assay at 1 hour post-thaw, or Plate Assay at 4 hours post-thaw.
[0071] FIG. 29A is a bar graph of positive control cells (i.e., Control: OATP1B1 Cells), negative control cells (i.e., Neg Control), HEK293 cells cultured in Erlenmeyer Shaker Flasks (i.e., Susp: CD SF), in Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (i.e., Atta: Plating PDL), in Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with plating media (i.e., Atta: Plating TC), or in Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap treated with CD_10% FBS (i.e., Atta: CD/FBS_TC) with respect to Viability (%), wherein HEK293 cells were thawed in Plating Media or in HBSS Buffer.
[0072] FIG. 29B is a graph of Viability (%) with respect to Thawing Media (i.e., HBSS Buffer or Plating Media) as described in FIG. 29A.
[0073] FIG. 30 is a flow chart of suitable culturing conditions according to embodiments of this disclosure.
[0074] FIG. 31A is a bar graph showing the uptake of E17BG in the presence and absence of sodium butyrate ("SB") in HEK-293 cells that overexpressed monkey Oatplbl, dog Oatplb4, and rat Oatplb2, as compared to human OATPlBl* la (i.e., wild-type).
[0075] FIG. 3 IB is a bar graph showing the uptake of rosuvastatin in the presence and absence of sodium butyrate ("SB") in HEK-293 cells that overexpressed monkety Oatplbl, dog Oatplb4, and rat Oatplb2, as compared to human OATPlBl* la (i.e., wild-type).
[0076] FIG. 32 is a graph of the time-dependent uptake of the probe substrate via OATP/Oatps. Uptake of 2.0 μΜ estradiol-17P-glucuronide in human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 cells were determined at 1, 2, 5, 10, and 15 minutes, respectively at 37°C [0077] FIG. 33 is a graph of Km values of E17BG in HEK-293 cells overexpressing monkey Oatplbl, dog Oatplb4, and rat Oatplb2 (following incubation of 5 minutes). Km values were calculated according to Michaelis-Menten kinetics.
[0078] FIG. 34A is a graph of the species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for prototypical estradiol- 17P-glucuronide.
[0079] FIG. 34B is a graph of the species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for prototypical estrones- sulfate.
[0080] FIG. 34C is a graph of the species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for prototypical CCK-8.
[0081] FIG. 34D is a species differences of human OATPlBl *la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for pitavastatin.
[0082] FIG. 34E is a species differences of human OATPlBl*la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for atorvastatin.
[0083] FIG. 34F is a species differences of human OATPlBl* la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for pravastatin.
[0084] FIG. 34G is a species differences of human OATPlBl *la and OATP1B3, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 substrate specificity for simvastatin.
[0085] FIG. 35A is a graph depicting the results of a kinetic assay whereby uptake of estradiol- 17P-glucuronide in human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 was measured after a 2-minute incubation at 37°C.
[0086] FIG. 35B is a table of the calculated results of the kinetic assays depicted in FIG. 35 A.
[0087] FIG. 35C s a graph depicting the results of a kinetic assay whereby uptake of rosuvastatin in human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 was measured after a 2-minute incubation at 37°C.
[0088] FIG. 35D is a table of the calculated results of the kinetic assays depicted in FIG. 35C. [0089] FIG. 35E is a graph depictingthe results of a kinetic assay whereby uptake of atorvastatin in human OATPlBl*la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 was measured after a 2-minute incubation at 37°C.
[0090] FIG. 35F is a table of the calculated results of the kinetic assays depicted in FIG. 35E.
[0091] FIG. 36A is a graph depicting the IC50 values of human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 determined by co-incubating the cells with 1 μΜ E17PG with cyclosporin A at a range of concentrations.
[0092] FIG. 36B is a graph depicting the IC50 values of human OATPlBl* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 determined by co-incubating the cells with 1 μΜ rosuvastatin with gemfibrozil at a range of concentrations.
[0093] FIG. 37A is a table depicting results of thawing and recovery of 0ATP1B1 *5 and 0ATP1B1* 15 HEK-293 cells.
[0094] FIG. 37B is a table depicting results of thawing and recovery, as well as Uptake Ratio of OAT2, OAT4, OCTN2 HEK-293 cells using the probe substrate Used in the table.
[0095] FIG. 37C is a tabe depicting results of thawing and recovery, as well as Uptake Ratio, of monkey Oatplbl, dog Oatplb4, and rat Oatplb2 HEK-293 cells using Ε17β&
[0096] FIG. 37D are images of the Figure 20A HEK-293 cells transfected with 0ATP1B1*5 and 0ATP1B1* 15, plated at 0.4 x 106 cells per well in 24-well poly-D-lysine coated plates at 24 hrs post-plating (following thaw from cryopreservation).
[0097] FIGS. 38A is a graph of the results of uptake assays conducted on OATPlBl*la, 0ATP1B1 *5, 0ATP1B1* 15 and control cells for fluorescein methotrexate (F-MTX).
[0098] FIG. 38B is a graph of the results of uptake assays conducted on OATPlBl *la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for Ε17β&
[0099] FIG. 38C is a graph of the results of uptake assays conducted on OATPlBl *la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for atorvastatin.
[00100] FIG. 38D is a graph of the results of uptake assays conducted on OATPlBl *la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for simvastatin. [00101] FIG. 38E is a graph of the results of uptake assays conducted on OATPlBl* la, 0ATP1B1*5, 0ATP1B1* 15 and control cells for pitavastatin.
[00102] FIG. 38F is a graph of the results of uptake assays conducted on OATPIBI * la, 0ATP1B1*5, 0ATP1B1*15 and control cells for and fluvastatin.
[00103] FIGS. 39A is a graph of the results of kinetic assays conducted on OATPlBl*la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for Ε17β&
[00104] FIGS. 39B is a graph of the results of kinetic assays conducted on OATPlBl*la, 0ATP1B1*5, 0ATP1B1 *15 and control cells for pitavastatin.
[00105] FIGS. 39C is a graph of the results of kinetic assays conducted on OATPlBl*la, OATPIBI *5, OATPIBI *15 and control cells for rosuvastatin.
[00106] FIG. 39D is a table of the calculated results of the kinetic assays depicted in FIGS 39A-39F.
[00107] FIG. 40 is a graphic illustration of the LC-MS/MS mediated targeted protein quantification process used.
[00108] FIGS. 41 A-41D are graphs of the results of extract ion chromatograms of selected reaction monitoring for AQUA® peptide (Sigma-Aldrich) and samples of CORNING® TRANSPORTOCELLS™ OATPIBI* la, control cells, 0ATP1B1*5 and 0ATP1B1*15 prepared according to the graphic illustration of FIG. 40. The lined arrow represents the peak for the signature peptide for OATPIBI and the solid arrow represents the peak for the internal standard.
[00109] FIG. 42A is a graph of the DNA concentration necessary to achieve consistent expression across OATPIBI wild-type and single nucleotide polymorphisms.
[00110] FIG. 42B is a graph showing the consistency of uptake activity and ratios across four different wild-type OATPIBI lots.
[00111] FIG. 42C is a graph showing the consistency of protein expression across a control, three different wild-type OATPIBI lots, a 0ATP1B1*5 lot and a OATPIBI*! 5 lot. DETAILED DESCRIPTION
[00112] As used herein the following terms shall have the definitions set forth below.
[00113] As used herein, the term "cell" includes both primary cells as well as established cell lines (e.g., human embryonic kidney ΗΕΚ293 cells, Chinese hamster ovary CHO, Madin- Darby Canine Kidney Cells MDCK, Pig Kidney Epithelial Cells LLC-PKl, human epithelial colorectal adenocarcinoma cells Caco-2 and Chinese hamster lung fibroblast V79 cells).
[00114] As used herein, the term "drug transporter protein" refers to a membrane bound transport protein that includes, but is not limited to, ATP binding cassette (hereinafter, "ABC") transporters and solute carrier (hereinafter, "SLC") transporters.
[00115] As used herein, the term "drug metabolizing enzyme" includes, but is not limited to, cytochromes such as cytochromes (i.e., CYPs) P450; UDP-glucouronyl transferases (i.e., Uridine 5'-diphospho-glucuronosyltransferase) and other non-CYP drug metabolizing enzymes such as alcohol dehydrogenases, monoamine oxidases and aldehyde oxidases.
[00116] As used herein, the term "detectable" means that the activity of a selected probe substrate in cells transfected with a drug transporter protein and/or drug metabolizing enzyme shall be higher than the activity of the same probe substrate in cells transfected with empty vector; desirably, the difference in activity will be at least 5-fold.
[00117] As used herein, the use of upper case letters in transporter nomenclature identifies the human protein/gene, i.e., MRP2/ABCC2, etc. ; smaller case letters indicate the transporter derives from a preclinical (i.e., nonhuman mammalian) species, e.g., Mrp2/Abcc2, etc. Unless otherwise specified, a gene is derived from any species (e.g., human or other mammal).
[00118] As used herein, the terms "OATPIBI", "OATP2", and "SLCO 1B1" are interchangeable and refer to a human protein/gene that corresponds to the nonhuman protein/gene Oatp2. Unless noted otherwise, reference to OATPIBI is to OATPIBI* la.
[00119] As used herein, the terms "OATl" and "SLC22A6" are interchangeable and refer to an organic anion transporter 1. Unless noted otherwise, reference to OATl is to the full length cDNA encoding with 563 amino acids (also referred to herein as "OATl long").
[00120] As used herein, the term "SNP" means single nucleotide polymorphism(s). [00121] Reference will now be made in detail to embodiments of recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof. Thereafter, embodiments of processes of preparing cryopreserved, transiently transfected recombinant cells and suspension assays will be described in detail with specific reference to FIG. 21.
L Recombinant Cells
[00122] In embodiments, recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof, are disclosed. In embodiments, the recombinant cells are cryopreserved and activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof, is detectable in a population of the recombinant cells prior to cryopreservation and/or following thaw from cryopreservation. In some embodiments, the recombinant cells are cryopreserved and activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof, is detectable in a population of the recombinant cells prior to cryopreservation and/or following thaw from cryopreservation at an uptake ratio of at least 5 {i.e., 5: 1). In some particular embodiments, the recombinant cells are cryopreserved and activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof, is detectable in a population of the recombinant cells prior to cryopreservation at an uptake ratio of at least 5.
[00123] In embodiments, the recombinant cells are mammalian cells derived from a human or a non-human {e.g. , mouse, rat, dog, monkey, hamster, and pig, etc.). In some embodiments, the recombinant cells are hepatocytes or endothelial cells. In some particular embodiments, the recombinant cells are hepatocytes. In other particular embodiments, the recombinant cells are established cells lines, such as, e.g. , human embryonic kidney HEK293 cells.
[00124] In embodiments, the recombinant cells transiently overexpress one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof. In some embodiments, the recombinant cells are transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof. In particular embodiments, the recombinant cells are transiently transfected as described subsequently with regard to processes of preparing cryopreserved, transiently transfected recombinant cells. In embodiments, the one or more transiently overexpressed genes is derived individually from a human or non- human (i.e., an animal) species. In some embodiments, the non-human species from which the one or more transiently overexpressed genes is derived are selected from the group consisting of a mouse, a rat, a dog, a monkey, a pig, and a guinea pig.
[00125] Human OATPIBI and OATP1B3 are the two major OATP family members involved in hepatic uptake of numerous xenobiotics and drugs. Thus, there is much clinical evidence that both OATPIBI and OATP1B3 are involved in DDI. Monkeys, dogs and rats are frequently used in preclinical studies to provide preclinical pharmacokinetics (i.e., ADME) as well as toxicity data for potential new drugs. Specifically, a recombinant model with overexpressed animal species Oatp proteins allows for the in vitro evaluation of substrate specificity and affinity, thereby facilitating the interpretation of potential interspecies differences in drug pharmacokinetic and toxicological responses.
[00126] A benefit of using monkey Oatplbl and lb3 is the high degree of homology with the human counterparts; specifically, there is homology of approximately 91.9% between OATPIBI and monkey Oatplbl, and there is homology of approximately 93.5% between OATP1B3 and monkey Oatplb3. Dog Oatplb4 was cloned in 2010; since then, it has been determined that its expression level is the highest as compared to other Oatp family members. Rat Oatplb2 is considered to be the rodent counterpart of the human OATP IB family.
[00127] In some embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein selected from the group consisting of ABC transporters, SLC transporters, and a combination thereof. In some particular embodiments, the recombinant cells include one or more transiently overexpressed genes encoding an ABC transporter. In embodiments, the human ABC transporter includes at least one of the proteins set forth in Table 1. Similarly, in embodiments, the one or more genes encoding the human ABC transporter include at least one of the genes set forth in Table 1.
Figure imgf000019_0001
MDR3/ABCB3 Multidrug Resistance Protein 3 NM 000443
MRP1/ABCC1 Multidrug Resistance Protein 1 NM 004996
MRP2/ABCC2 Multidrug Resistance- Associated Protein 2 NM_000392
MRP3/ABCC3 Multidrug Resistance Protein 3 NM 003786
MRP4/ABCC4 Multidrug Resistance Protein 4 NM_005845
MRP5/ABCC5 Multidrug Resistance Protein 5 NM 005688
MRP6/ABCC6 Multidrug Resistance Protein 6 NM 001171
MRP7/ABCC7 Multidrug Resistance Protein 7 NM_000492
MRP8/ABCC8 Multidrug Resistance Protein 8 NM 000352
BCRP/ABCG2 Breast Cancer Resistance Protein NM_004827
BSEP/ABCB11 Bile Salt Export Pump NM 003742
[00128] In some particular embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a human SLC transporter. In embodiments, the SLC transporter includes at least one of the proteins set forth in Table 2. Similarly, in embodiments, the one or more genes encoding the human SLC transporter include at least one of the genes set forth in Table 2.
Figure imgf000020_0001
MATE 1 /SLC47A1 Multidrug and Toxin Extrusion 1 NM 018242
MATE2K/SLC47A2 Multidrug and Toxin Extrusion 2K NM 001099646
URATl/ SLC22A12 Urate Transporter 1 NM 144585
ASBT/SLC10A2 Apical Sodium/Bile Acid Co-Transporter NM 000452
NTCP/SLC10A1 Sodium/Taurocholate Co-Transporting Peptide NM 003049
In this instance, OATP1B1 includes OATPlBl*la and OATPlBl*lb, OATP1B 5, and 0ATP1B1*15.
[00129] In exemplary, non-limiting embodiments, the one or more genes encoding a human SLC transporter include at least one of the genes set forth in Table 3.
Figure imgf000021_0001
[00130] In some particular embodiments, the recombinant cells include one or more transiently overexpressed genes selected from the group consisting of MDRl/Mdrla/Mdrlb, MRPl/Mrpl, MRP2/Mrp2, MRP3/Mrp3, MRP4/Mrp4, MRP5/Mrp5, MRP6/Mrp6, MRP7/Mrp7, MRP 8/Mrp8, BCRP/Bcrp, BSEP/Bsep, OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATEl/Matel, MATE2K/Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof. In other particular embodiments, the recombinant cells include one or more transiently overexpressed genes selected from the group consisting of OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATE 1 /Mate 1, MATE2K Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof. In some embodiments, OATP2/Oatp2 is selected from the group consisting of OATPlBl* la, OATPlBl* lb, 0ATP1B1*5, 0ATP1B1* 15 and combinations thereof. In some embodiments, OATP2/Oatp2 is OATPlBl* lb. In some embodiments, OATP2/Oatp2 is 0ATP1B1 *5. In some embodiments, OATP2/Oatp2 is 0ATP1B1*15.
[00131] In some embodiments, the recombinant cells include one or more transiently overexpressed genes that encodes a solute carrier transporter protein selected from the group consisting of monkey Oatplbl, monkey Oatplb3, dog Oatplb4, rat Oatplb2, rat Oatplal, rat Oatpla4, and a combination thereof. In some particular embodiments, the recombinant cells include one or more transiently overexpressed genes that encodes monkey Oatplbl and monkey Oatplb3. In other particular embodiments, the recombinant cells include one or more transiently overexpressed genes that encondes dog Oatplb4. In even further particular embodiments, the recombinant cells include one or more transiently overexpressed genes that encondes rat Oatplb2.
[00132] In some embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a drug metabolizing enzyme. In embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a drug metabolizing enzyme selected from the group consisting of cytochrome drug metabolizing enzymes, non-cytochrome drug metabolizing enzymes, and a combination thereof. In particular embodiments, the recombinant cells include one or more transiently overexpressed genes encoding CYPs P450, UDP-glucouronyl transferases, alcohol dehydrogenases, monoamine oxidases, or aldehyde oxidases.
[00133] In embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is detectable in a population of the recombinant cells prior to cryopreservation and/or following thaw from cryopreservation at an uptake ratio of at least 5. In some embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is detectable in a population of the recombinant cells prior to cryopreservation at an uptake ratio of at least 5. In recombinant cells wherein activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is detectable in a population of the recombinant cells prior to cryopreservation, the recombinant cells have been transfected with one or more genes and have been cultured (such as, e.g. , via suspension or adherent culture) for a period of time sufficient to initiate protein expression in the recombinant cells prior to cryopreservation.
[00134] In some embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5. In some particular embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells within four hours of thaw from cryopreservation at an uptake ratio of at least 5. In recombinant cells wherein activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells within 4 hours of thaw from cryopreservation, the recombinant cells have been transfected with one or more genes and have been cultured (such as, e.g. , via suspension or adherent culture) prior to cryopreservation for a period of time sufficient to initiate protein expression in the recombinant cells. In embodiments wherein activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof is detectable at an uptake ratio of at least 5 prior to cryopreservation and/or would be detectable at an uptake ratio of at least 5 within 4 hours of thaw from cryopreservation, the recombinant cells are assay-ready. In some particular embodiments, assay-ready recombinant cells are suitable for screening drug candidates (without culturing) to determine whether they have an effect on drug transporter proteins and/or drug metabolizing enzymes. For example, drug candidates can be screened to determine if any are substrates or inhibitors of the drug transporter proteins and/or drug metabolizing enzymes. In particular, if a drug candidate is a substrate of a drug transporter protein and/or a drug metabolizing enzyme, the drug candidate will be affected. For example, if the drug candidate is a substrate of a drug transporter protein, the drug candidate will be translocated in and/or out of the recombinant cell via the drug transporter protein. However, if the drug candidate is an inhibitor of the drug transporter protein, the drug candidate will inhibit translocation of a substrate of the drug transporter protein in and/or out of the recombinant cell. In some embodiments, screening is conducted using whole cells and/or subcellular fractions thereof (such as, e.g., via use of microsomes and/or cytosol).
[00135] In some embodiments, activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof would be detectable in a population of recombinant cells within 48 hours of thawing from cryopreservation. In some particular embodiments, activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof, would be detectable in a population of recombinant cells at about 0 hours post-thaw from cryopreservation (i.e. , immediately following thaw from cryopreservation), at about 4 hours post-thaw from cyropreservation, at about 8 hours post-thaw from cryopreservation, at about 16 hours post- thaw from cryopreservation, at about 24 hours post- thaw from cryopreservation, or at about 48 hours post-thaw from cryopreservation. In such particular embodiments, the recombinant cells have been transfected with one or more genes prior to cryopreservation and have been cultured for a period of time sufficient to initiate protein expression in the recombinant cells either prior to cryopreservation or following thaw from cryopreservation.
[00136] In some particular embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity of the drug transporter protein is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of at least 5. In embodiments, activity of the drug transporter protein is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of from about 5 to about 150. In some embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity thereof is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30. In embodiments, the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g. , a plated population), a suspended population, or a combination thereof.
[00137] In some particular embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity of the drug transporter protein would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5. In embodiments, activity of the drug transporter protein would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150. In some embodiments, the recombinant cells include one or more transiently overexpressed genes encoding a drug transporter protein, wherein activity thereof would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30. In embodiments, the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g., a plated population), a suspended population, or a combination thereof.
[00138] Methods for detecting activity of a drug transporter protein and/or drug metabolizing enzyme in recombinant cells are known to the skilled artisan, such as, e.g., via uptake assay. In exemplary, non-limiting embodiments, activity of a drug transporter protein and/or drug metabolizing enzyme is detected by washing the cells with appropriate buffer (such as, e.g., pre- warmed HBSS buffer with Ca2+ and Mg2+ for thawed Corning® TransportoCells™) and pre- incubating the cells in appropriate buffer (such as, e.g., HBSS buffer for 10 minutes at 37 °C for thawed Corning® TransportoCells™). An uptake assay may then be performed by adding appropriate labeled substrates (such as, e.g., radio-labeled substrates) and/or appropriate labeled inhibitors (such as, e.g., radio-labeled inhibitors) and incubating at 37 °C for an appropriate period of time (such as, e.g., 2 minutes for MATE1/2K; 5 minutes for OATPlBl *la, OATP1B3, and OAT1/3; or 10 minutes for OCTl/2). Reactions may be stopped by removing substrate solutions and washing the cells with cold buffer (such as, e.g., HBSS buffer for Corning® TransportoCells™). Cells may be lysed with M-Per Mammalian Protein extraction reagent and uptake activity may be quantified using liquid scintillation counting normalized for protein concentration in each sample. Kinetic parameters may be determined via non-linear regression using SigmaPlot. For each substrate concentration, the initial uptake may be calculated by subtracting the initial rate determined in control cells from that obtained in experimental, recombinant cells expressing the drug transporter protein and/or drug metabolizing enzyme. IC50 values may be determined using Sigmoidal Hill four-parameter equation. Activity of a drug transporter protein and/or drug metabolizing enzyme may be detected via an adherent assay (such as, e.g. , a plated population) or a suspension assay, as described subsequently.
[00139] Embodiments of recombinant cells including one or more transiently overexpressed genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof have been described in detail. Reference will now be made in detail to embodiments of processes of preparing cryopreserved, transiently transfected recombinant cells.
II. Processes of Preparing Cryopreserved. Transiently Transfected Recombinant Cells
[00140] In embodiments, processes of preparing cryopreserved transiently transfected recombinant cells are disclosed. The processes may include transiently transfecting cells with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof (providing transiently transfected recombinant cells), and cryopreserving the transiently transfected recombinant cells within 72 hours of transfection. In some embodiments, the processes include transiently transfecting cells with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or combination thereof (providing transiently transfected recombinant cells), and cryopreserving the transiently transfected recombinant cells within 48 hours of transfection. In embodiments, a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation and/or following thaw from cryopreservation. In some embodiments, the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation and/or following thaw from cryopreservation, wherein the detectable level is an uptake ratio of at least 5 {i.e., 5: 1). In some particular embodiments, the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation, wherein the detectable level is an uptake ratio of at least 5.
[00141] In embodiments, the recombinant cells are as previously described with regard to recombinant cells. In embodiments, the cells are transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or a combination thereof. In embodiments, the one or more genes encoding a drug transporter protein, drug metabolizing enzyme, or a combination thereof are as previously described with regard to recombinant cells.
[00142] In some embodiments, the cells are transiently transfected with one or more genes encoding a drug transporter protein to provide transiently transfected recombinant cells. In embodiments, transfection includes introducing genes into a population of cells. Gene delivery systems (e.g., transient transfection systems) for introducing one or more genes into a population of cells are known to a skilled artisan. Exemplary, non-limiting transient transfection systems include virus-based gene delivery methods, lipid-based transfection methods, electroporation (i.e., EP), and combinations thereof. With regard to virus-based gene delivery methods, such methods require special handling due to safety concerns. With regard to lipid-based transfection methods, such methods are costly and are not amenable to large-scale manufacturing processes. Additionally, lipid-based transfection methods provide relatively low gene delivery efficiency and relatively delayed protein expression (e.g., from 72 hours to 96 hours post-transfection) (data not shown). With regard to EP, EP is amenable to large-scale manufacturing processes and avoids the safety issues of viral-based gene delivery methods. Further, EP results in relatively efficient gene delivery. As demonstrated by the data disclosed herein, EP leads to the surprising and unexpected effect of improved (decreased) lot-to- lot variability, improved manufacturability of the instantly-disclosed transiently transfected, cryopreserved cells, as well as an improved, earlier response time and increased levels of expression and activity of transiently transfected drug transporter proteins as compared to lipid-based transfection methods. As such, in embodiments, the processes of preparing transiently transfected recombinant cells include transiently transfecting cells via EP. In exemplary, non-limiting embodiments, cells are pelleted down via centrifugation, aspirated, and resuspended in appropriate EP buffer (such as, e.g., buffer available from MaxCyte, Cat. No. B201). A cell stock may then be prepared by transferring the cell suspension to 50 ml Falcon tubes, pelleting down via centrifugation, and resuspending in appropriate EP buffer to a final cell density of, e.g., 100 x 106 cells/ml. DNA to be used for EP may then be prepared in sterile water (such as, e.g., to a final concentration of 5 mg/ml). For each sample, 0.4 ml of the cell stock and DNA may be transferred to a sterile 1.5 ml eppendorf tube and processed in an OC-400 Processing Assembly (available from MaxCyte, Cat. No. OC-400R) for EP. Vectors used for transient transfection utillize the CMV promoter (such as, e.g., pCMV6-XL5, pCMV6-Entry, and pCMV6-AC vectors available from Origene).
[00143] After gene delivery into a population of cells, gene(s) encoding a drug transporter protein and/or a drug metabolizing enzyme will be overexpressed such that activity of the protein(s) encoded therefrom are detectable following thaw from cryopreservation. Drug candidates can be tested to determine if any are substrates or inhibitors of the protein(s) encoded from the overexpressed gene(s) by incubation of the recombinant cells therewith. In particular, if a drug candidate is a substrate of a drug transporter protein and/or a drug metabolizing enzyme, the drug candidate will be affected. For instance, if the drug candidate is a substrate of a drug transporter protein, the drug candidate will be translocated in or out of the recombinant cell via the drug transporter protein. However, if the drug candidate is an inhibitor of the drug transporter protein, the drug candidate will inhibit translocation of a substrate of the drug transporter protein in or out of the recombinant cell.
[00144] Additionally, in embodiments, the recombinant cells of the present disclosure are further transfected with RNAi and/or siRNA of the transiently overexpressed genes to knockdown and/or knockout the expression thereof. For example, primary cells (such as, e.g., hepatocytes) may be transfected with RNAi and/or siRNA directed against any ABC transporters, SLC transporters, and/or any drug metabolizing enzymes to knockdown and/or knockout the expression thereof.
[00145] In embodiments, the transiently transfected recombinant cells are cryopreserved within 72 hours of transfection. In embodiments wherein a population of cells which overexpress the one or more genes at a detectable level prior to cryopreservation is desired, the transiently transfected recombinant cells are cultured for a period of time sufficient to initiate protein expression in the recombinant cells prior to cryopreservation. In some embodiments, the transiently transfected recombinant cells are cultured for from about 24 hours to about 72 hours, or for about 48 hours prior to cryopreservation. In embodiments wherein a population of cells which would overexpress the one or more genes at a detectable level within 4 hours following thaw from cryopreservation is desired, the transiently transfected recombinant cells are cultured for a period of time sufficient to initiate protein expression in the recombinant cells prior to cryopreservation. In some embodiments, the transiently transfected recombinant cells are cultured for from about 24 hours to about 72 hours, or for about 48 hours prior to cryopreservation. In embodiments wherein a population of cells which would overexpress the one or more genes at a detectable level within 48 hours following thaw from cryopreservation is desired (e.g. , at about 0 hours post-thaw from cryopreservation (i.e. , immediately following thaw from cryopreservation), at about 1 hour post-thw from cyropreservation, at about 4 hours post- thaw from cyropreservation, at about 8 hours post-thaw from cryopreservation, at about 16 hours post-thaw from cryopreservation, at about 24 hours post-thaw from cryopreservation, or at about 48 hours post-thaw from cryopreservation), the transiently transfected recombinant cells are cultured for from about 24 hours to about 72 hours, or for about 48 hours prior to cryopreservation.
[00146] In embodiments, the transiently transfected recombinant cells are cultured in suitable culturing conditions via suspension culture or adherent culture (such as, e.g., a plated culture). In some embodiments, the transiently transfected recombinant cells are cultured in suitable culturing conditions via suspension culture in shaker flasks. In other embodiments, the transiently transfected recombinant cells are cultured in suitable culturing conditions via adherent culture in microplates or T-flasks. In embodiments, the transiently transfected recombinant cells are cultured in suitable culturing conditions via suspension or adherent culture at a cell density of from about 100K cells/well to 300K cells/well. In specific embodiments, the transiently transfected cells are cultured in suitable culturing conditions via suspension culture or adherent culture at a cell density of at least about 200K cells/well. In other specific embodiments, the transiently transfected cells are cultured in the presence of sodium butyrate. In further specific embodiments, the transiently transfected cells are cultured in the presence of sodium butyrate provided to a final concentration of 5 mM. In embodiments, the transiently transfected recombinant cells are harvested following culturing. Methods for harvesting transiently transfected recombinant cells are known to the skilled artisan, such as, e.g. , via centrifugation and/or treatment with Trypsin or Dulbecco's Phosphate-Buffered Saline.
[00147] In embodiments, the transiently transfected recombinant cells are cryopreserved within 72 hours of transfection. In some embodiments, the transiently transfected recombinant cells are cryopreserved within 48 hours of transfection. Methods for cryopreserving transiently transfected recombinant cells are known to the skilled artisan. In exemplary, non-limiting embodiments, transiently transfected recombinant cells are cryopreserved by pelleting down transiently transfected recombinant cells via centrifugation and resuspending in freshly prepared appropriate ice-cold freezing media (such as, e.g. , 9 parts culturing medium and 1 part DMSO). Then, cryo vials may be filled with 1-2 ml of the suspended transiently transfected recombinant cells and placed on ice-cold Mr. Frosty freezing container and stored in a -80 °C freezer overnight.
[00148] In embodiments, a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation and/or following thaw from cryopreservation, wherein the detectable level is an uptake ratio of at least 5. In some embodiments, a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein, drug metabolizing enzyme, or combination thereof at a detectable level prior to cryopreservation, wherein the detectable level is an uptake ratio of at least 5.
[00149] In some embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5. In some particular embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof would be detectable in a population of the recombinant cells within four hours of thaw from cryopreservation at an uptake ratio of at least 5. In embodiments wherein activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof is detectable at an uptake ratio of at least 5 prior to cryopreservation and/or would be detectable at an uptake ratio of at least 5 within 4 hours of thaw from cryopreservation, the recombinant cells are assay- ready. In some particular embodiments, assay-ready recombinant cells are suitable for screening drug candidates (such as, e.g., without culturing) to determine whether they have an effect on drug transporter proteins and/or drug metabolizing enzymes.
[00150] In particular embodiments, a suspended population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at a detectable level at about 0 hours post-thaw from cryopreservation (i.e. , immediately following thaw from cryopreservation). In particular embodiments, a suspended population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at a detectable level within 1 hour post thaw from cryopreservation. For example, in some embodiments, the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at the detectable level within 1 hour post thaw from cryopreservation as determined via a suspension assay. In other particular embodiments, an adherent population (such as, e.g. , a plated population) of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at a detectable level within 4 hours post thaw from cryopreservation. For example, in some embodiments, the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or the combination thereof, at the detectable level within 4 hours post thaw from cryopreservation as determined via an adherent (such as, e.g., a plated) assay.
[00151] In some embodiments, a population of the transiently transfected recombinant cells would transiently overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or combination thereof at a detectable level following thaw from cryopreservation, wherein the detectable level is an uptake ratio of at least 5. In some particular embodiments, a population of the transiently transfected recombinant cells would transiently overexpress the one or more genes encoding the drug transporter protein, the drug metabolizing enzyme, or combination thereof at a detectable level at about 0 hrs post-thaw from cyropreservation (i.e. , immediately post-thaw), at about 1 hour post-thaw from cryopreservation, at about 4 hours post-thaw from cryopreservation, at about 8 hours post-thaw from cryopreservation, at about 16 hours post- thaw from cryopreservation, at about 24 hours post- thaw from cryopreservation, or at about 48 hours post-thaw from cryopreservation.
[00152] In some particular embodiments, the transiently transfected recombinant cells transiently overexpress one or more genes encoding a drug transporter protein, wherein activity of the drug transporter protein is detectable in a population of recombinant cells prior to cryopreservation at an uptake ratio of at least 5. In embodiments, the detectable level is at an uptake ratio of from about 5 to about 150. In some embodiments, the detectable level is at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30. In embodiments, the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g. , a plated population), a suspended population, or a combination thereof.
[00153] In some particular embodiments, the transiently transfected recombinant cells would transiently overexpress one or more genes encoding a drug transporter protein, wherein activity of the drug transporter protein would be detectable in a population of recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5. In embodiments, the detectable level is an uptake ratio of from about 5 to about 150. In some embodiments, the detectable level is at an uptake ratio of from about 5 to about 150, or from about 10 to about 250, or from about 25 to about 100, or about 30. In embodiments, the population of recombinant cells is selected from the group consisting of an adherent population (such as, e.g. , a plated population), a suspended population, or a combination thereof.
[00154] Methods for detecting activity of a drug transporter protein and/or drug metabolizing enzyme in recombinant cells are as previously described with regard to recombinant cells. In exemplary, non-limiting embodiments, activity of the drug transporter protein and/or drug metabolizing enzyme may be detected via an uptake assay.
[00155] Embodiments of processes of preparing cryopreserved, transiently transfected recombinant cells have been described in detail. Reference will now be made in detail to embodiments of suspension assays with specific reference to FIG. 21.
III. Suspension Assays for Assessing Activity of Drug Transporter Proteins and/or Drug Metabolizing Enzymes in Recombinant Cells
[00156] In embodiments, suspension assays for assessing activity of drug transporter proteins and/or drug metabolizing enzymes in recombinant cells are disclosed. Referencing FIG. 21, in some embodiments, the suspension assays include: (1) providing suspended, recombinant cells transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or a combination thereof, with a substrate; (2) stopping reaction of the drug transporter protein, drug metabolizing enzyme, or combination thereof, with the substrate; (3) separating the recombinant cells and the substrate via centrifugation; and (4) assessing activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof.
[00157] In embodiments, the recombinant cells are as previously described with regard to recombinant cells. In embodiments, the cells are transiently transfected with one or more genes encoding a drug transporter protein, a drug metabolizing enzyme, or a combination thereof, as previously described with regard to processes of preparing cryopreserved, transiently transfected recombinant cells. In embodiments, the one or more genes encoding a drug transporter protein, drug metabolizing enzyme, or a combination thereof, are as previously described with regard to recombinant cells.
[00158] In embodiments, suspended, recombinant transiently transfected cells are provided and/or contacted with a substrate. In some embodiments, the recombinant, transiently transfected cells are suspended in buffer (such as, e.g. , Hank's Balanced Salt Solution with Ca2+ and Mg2+). In some particular embodiments, the recombinant, transiently transfected cells are suspended in buffer to a cell density of about 1 x 106 cells/ml.
[00159] In embodiments, suspended, recombinant cells transiently transfected with one or more genes encoding a drug transporter protein and/or a drug metabolizing enzyme are provided and/or contacted with a substrate. In some embodiments, the substrate is provided in a substrate solution. In some embodiments, suspended, recombinant cells transiently transfected with one or more genes encoding a drug transporter protein are provided and/or contacted with a substrate solution. In some embodiments, the substrate solution includes a substrate upon which the drug transporter protein is capable of acting and/or a buffer. In some particular embodiments, the substrate solution contains a labeled substrate (such as, e.g. , a radio-labeled or fluorescently- labeled substrate) upon which the drug transporter protein is capable of acting and/or a buffer. For example, in embodiments wherein suspended, recombinant cells are transiently transfected with one or more genes encoding Organic Anion- Transporter Polypeptide 1B1, the substrate solution may contain Estradiol 17-β Glucuronide, fluorescein methotrexate, 8-fluorescein-cAMP, and/or Hank's Balanced Salt Solution. In some particular embodiments, the suspended, recombinant transiently transfected cells are provided at a cell density of about 200K cells/well and about 50 μΙ_, of the 5X substrate solution is provided for a final IX substrate. Both cells and substrate are resuspened/dissolved in buffer. In embodiments, the suspended, transiently transfected recombinant cells are provided and/or contacted with a substrate solution in a vessel, such as, e.g., a microplate.
[00160] In embodiments, a biochemical reaction of the drug transporter protein and/or drug metabolizing enzyme and substrate is inhibited and/or stopped. In some embodiments, biochemical reaction of the drug transporter protein and substrate is inhibited and/or stopped. In particular embodiments, the biochemical reaction is inhibited and/or stopped by providing and/or contacting the substrate with cold buffer. In some particular embodiments, the cold buffer is Hank's Balanced Salt Solution. In further particular embodiments, about 50 μΐ of Hank's Balanced Salt Solution is provided. In some other embodiments, reaction of the drug transporter protein and substrate is inhibited and/or stopped by providing and/or contacting the substrate with cold buffer and placing the suspended, transiently transfected recombinant cells and/or substrate on ice. In some particular embodiments, placing the suspended, transiently transfected recombinant cells and/or substrate on ice involves placing a vessel (such as, e.g., a microplate) including the transiently transfected recombinant cells and/or substrate on ice.
[00161] In embodiments, the suspended, transiently transfected recombinant cells and/or substrate are separated via centrifugation. In some embodiments, the suspended, transiently transfected recombinant cells and/or substrate are centrifuged at about 1000 g for about 1 minute at about 4 °C. Upon centrifugation, a cell pellet including the transiently transfected recombinant cells may form. In some embodiments, a cell pellet formed during centrifugation is washed with buffer. In some particular embodiments, the wash buffer is Hank's Balanced Salt Solution. In some further particular embodiments, the cell pellet formed during centrifugation is washed 3 times with Hank's Balanced Salt Solution (HBSS).
[00162] In embodiments, activity of the drug transporter protein, drug metabolizing enzyme, or combination thereof is assessed. In some embodiments, methods for assessing and/or detecting the activity of the drug transporter protein, the drug metabolizing enzyme, or combination thereof are as previously described with regard to recombinant cells. In exemplary, non-limiting embodiments, activity of the drug transporter protein and/or drug metabolizing enzyme may be assessed via lysing and the appropriate radiolabel and/or fluorescent analysis of the radiolabled or fluorescent substrate.
[00163] Embodiments of suspension assays have been described in detail.
[00164] It should now be understood that various aspects of recombinant cells, preparation processes, and suspension assays are described herein and that such aspects may be utilized in conjunction with various other aspects.
[00165] In a first aspect, the disclosure provides a recombinant cell including one or more transiently overexpressed genes encoding a drug transporter protein. The recombinant cell is cryopreserved, and activity of the drug transporter protein is detectable in a population of the recombinant cells prior to cyropreservation at an uptake ratio of at least 5.
[00166] In a second aspect, the disclosure provides a recombinant cell of the first aspect, in which the activity of the drug transporter protein would be detectable in a population of the recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5.
[00167] In a third aspect, the disclosure provides a recombinant cell of the first or the second aspect, in which the activity of the drug transporter protein would be detectable in the population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150.
[00168] In a fourth aspect, the disclosure provides a recombinant cell of the first to the third aspects, in which the activity of the drug transporter protein would be detectable in a plated population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 30 within 4 hours of thawing.
[00169] In a fifth aspect, the disclosure provides a recombinant cell of the first to the third aspects, in which the activity of the drug transporter protein would be detectable in a suspended population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150 within 1 hour of thawing.
[00170] In a sixth aspect, the disclosure provides a recombinant cell of the first to the fifth aspects, in which the drug transporter protein is selected from the group consisting of an ATP binding cassette transporter and a solute carrier transporter protein. [00171] In a seventh aspect, the disclosure provides a recombinant cell of the first to the sixth aspects, in which the one or more transiently overexpressed genes is selected from the group consisting of MDRl/Mdrla/Mdrlb, MRPl/Mrpl, MRP2/Mrp2, MRP3/Mrp3, MRP4/Mrp4, MRP5/Mrp5, MRP6/Mrp6, MRP7/Mrp7, MRP 8/Mrp8, BCRP/Bcrp, BSEP/Bsep, OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATEl/Matel, MATE2K/Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof.
[00172] In an eighth aspect, the disclosure provides a recombinant cell of the first to the seventh aspects the one or more transiently overexpressed genes is selected from the group consisting of OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATEl/Matel, MATE2K/Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof.
[00173] In a ninth aspect, the disclosure provides a recombinant cell of the seventh to the eighth aspects, in which OATP2/Oatp2 is selected from the group consisting of OATPlBl* la, OATPlBl* lb, 0ATP1B1*5, 0ATP1B1* 15 and combinations thereof.
[00174] In a tenth aspect, the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is OATPlBl*la.
[00175] In an eleventh aspect, the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is OATPlBl* lb.
[00176] In a twelfth aspect, the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is 0ATP1B1*5.
[00177] In a thirteenth aspect, the disclosure provides a recombinant cell of the eighth aspect, in which OATP2/Oatp2 is 0ATP1B1* 15.
[00178] In a fourteenth aspect, the disclosure provides a recombinant cell of the first to the thirteenth aspects, in which the one or more transiently overexpressed genes is derived individually from a human or an animal species selected from the group consisting of a mouse, a rat, a guinea pig, a dog, and a monkey.
[00179] In a fifteenth aspect, the disclosure provides a recombinant cell of the first to the fourteenth aspect, in which the one or more genes encodes a solute carrier transporter protein selected from the group consisting of monkety Oatplbl, monkey Oatplb3, dog Oatplb4, rat Oatplb2, rat Oatplal, rat Oatpla4, and cominations thereof.
[00180] In a sixteenth aspect, the disclosure provides a recombinant cell of the first to the fifteenth aspects, in which the cell is a hepatocyte.
[00181] In a seventeenth aspect, the disclosure provides a recombinant cell of the first to the fifteenth aspects, in which the cell is an endothelial cell.
[00182] In a eighteenth aspect, the disclosure provides a process of preparing cryopreserved transiently transfected recombinant cells, the process including: transiently transfecting cells with one or more genes encoding a drug transporter protein to provide the transiently transfected recombinant cells, and cryopreserving the transiently transfected recombinant cells within 48 hours of transfection, wherein a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein at a detectable level prior to cryopreserving the transiently transfected recombinant cells, and wherein the detectable level prior to cryopreserving is an uptake ratio of at least 5.
[00183] In a nineteenth aspect, the disclosure provides a process according to the eighteenth aspect, in which transient transfection of the cells includes electroporation.
[00184] In a twentieth aspect, the disclosure provides a process according to the eighteenth or the nineteenth aspects, in which the transiently transfected recombinant cells are cryopreserved at about 24 hours to about 48 hours post transfection.
[00185] In a twenty-first aspect, the disclosure provides a process according to any of the eighteenth to the twentieth aspects, in which a population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation, and the detectable level following thaw from cryopreservation is an uptake ratio of at least 5.
[00186] In a twenty-second aspect, the disclosure provides a process according to any of the eighteenth to the twenty-first aspects, in which a suspended population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation within 1 hour post thaw.
[00187] In a twenty-third aspect, the disclosure provides a process according to any of the eighteenth to the twenty-second aspects, in which the detectable level following thaw from cryopreservation is an uptake ratio of from about 5 to about 150.
[00188] In a twenty-fourth aspect, the disclosure provides a process according to any of the eighteenth to the twenty-third aspects, in which a plated population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation within 4 hours post thaw.
[00189] In a twenty-fifth aspect, the disclosure provides a process according to any of the eighteenth to the twenty-fourth aspects, in which the detectable level following thaw from cryopreservation is an uptake ratio of from about 5 to about 30.
EXAMPLES
[00190] Cells were cultured under standard sterile practices for cell culture, and transiently transfected using EP. Following EP, cells were assayed for protein activity both before as well as after being frozen, thawed and plated. As detailed below, cells cultured in suspension and adherent cell cultures were both successfully transiently transfected and exhibited substantial activity of the recombinant protein following thaw from cryopreservation.
EXAMPLE 1
DEVELOPMENT AND CHARACTERIZATION OF TRANSIENTLY TRANSFECTED RECOMBINANT CELLS EXPRESSING A GENE ENCODING A DRUG TRANSPORTER PROTEIN [00191] CELLS CULTURED IN SUSPENSION - EXPERIMENTAL PROTOCOL. In brief, on Day 1, FreeStyle 293 Cells (hereinafter, "FS293") and 293-F cells were each passaged into appropriate sized shaker flasks at a density of 0.7-1.0 x 106 cell/ml using supplemented CD293 medium (hereinafter, "CD293 medium"; available from Gibco, Cat. No. 11913-019, Life Technologies Corp., Carlsbad, CA, supplemented with 4 mM L-Glutamine; available from Gibco, Cat. No. 25030-081, Life Technologies Corp.) or supplemented Excell™ 293 serum free media (available from Sigma, Cat. No. 14571C, Sigma- Aldrich, St. Louis, MO) supplemented with 6 mM L-Glutamine. Cell viability and cell number were determined using a Cellometer (available from Nexcelom Bioscience, Lawrence, MA).
[00192] On Day 2, EP of cells was executed. In short, following a determination of cell viability and cell density, cells were pelleted down by spinning at lOOg for 5 min, after which the media was aspirated and cells resuspended in 30 ml EP Buffer (available from MaxCyte, Cat. No. B201, MaxCyte Inc., Gaithersburg, MD). The cell suspension was transferred to 50 ml Falcon tubes, pelleted down as described above, and resuspended in an appropriate amount of EP Buffer to reach 100 x 106 cells/ml which was used as the cell stock. DNAs to be used for EP were prepared in sterile water at a final concentration of 5 mg/ml. For each sample, 0.4 ml of cell stock and DNA was placed in a sterile 1.5 ml eppendorf tube resulting in a final concentration of 200 μg/ml (see Table 4) or 300 μg/ml DNA (see Tables 10 and 11) and cell density of 40 x 106 cells per sample.
Figure imgf000039_0001
[00193] Samples were transferred into an OC-400 Processing Assembly (available from
MaxCyte, Cat. No. OC-400R, MaxCyte Inc.) which followed the manufacturer's instructions for EP of HEK cells. Following EP, the cells were carefully pipetted out and transferred into the bottom of a 125 ml shaker flask and incubated for 20 min at 37 °C with 8% C02, after which pre- warmed 40 ml CD293 media was added into the shaker flask to reach cell density at 1 x 106 cells/ml. The cells were incubated for 30 min at 37 °C and 8% C02. After 30 min recovery, cell viability and cell density were determined. A portion of cells (i.e., 20 x 106 cells) was used for plating and the rest was cryopreserved, or all of the cells were cryopreserved. It is contemplated that recombinant cells may be cryopreserved within 48 hrs of transfection and exhibit activity of protein(s) encoded from transfected gene(s) at a detectable level following thaw from cryopreservation.
[00194] For plating cells following EP, 20 x 106 cells were pelleted down by spinning at lOOg for 5 min and then resuspended in 20 ml pre- warmed CD293 media (cell density of 1 x 106 cells/ml). Cells were placed in 24-well tissue culture plates poly-D-Lysine coated, Corning Biocoat™ (available from Corning Life Sciences, Tewksbury, MA) at a density of 0.2 x 106 cells/well and 0.4 x 106 cells/well and incubated at 37 °C with 8% C02 so as to determine the impact of seeding density on uptake activity. Media was replaced 4 hours later and then every 24 hours until the day of assaying. On Day 4, cells were assayed for OATP1B1 activity as described below.
[00195] For cryopreservation, cells were pelleted then resuspended in freshly prepared ice-cold freezing media (9 parts supplemented CD293 medium and 1 part DMSO which was syringe filtered to sterilize) at a density of 10 x 106 cell/ml. Cryo vials were filled with 1 ml of this cell suspension, and placed on ice-cold Mr. Frosty freezing container (available from Thermal Scientific), which was stored in -80 °C freezer overnight after which the vials were transferred into liquid nitrogen.
[00196] Cryopreserved cells were assayed for OATP1B1 activity as described below. In brief, on Day 1, cryopreserved cells were removed from liquid nitrogen to dry ice, and then thawed in a water bath at 37 °C for about 2 min. Cells were transferred into 10 ml of supplemented DMEM media (DMEM with high glucose (available from Gibco, Cat. No. 11965092, Life Technologies Corp.), supplemented with 0.1 mM non-essential amino acids (available from Gibco, Cat. No. 11140050, Life Technologies Corp.), 10% FBS (available from SAFC Biosciences, Cat. No. 12016C, Sigma)) prewarmed to a temperature of about 37 °C and the viability and cell density determined. Cells were pelleted down and resuspended in supplemented DMEM media at a cell density of 1 x 106 viable cells/ml. Cells were plated in the same manner described above for plating cells following EP (which had not been cryopreserved) and assayed for OATP1B1 activity at 24, 48 and 72 hrs following plating thereof.
[00197] ADHERENT CELL CULTURES -EXPERIMENTAL PROTOCOL. In brief, HEK293 cells were cultured in 5 Layer Corning® CellStack® (available from Corning Inc. Life Sciences, Lowell, MA) using plating media containing DMEM (high glucose) available from Gibco Cat. No. 11965118, Life Technologies Corp. ; Penicillin-Streptomycin (10,000 units/ml) available from Gibco Cat. No. 15140-122, Life Technologies Corp. ; L-Glutamine (200 mM) available from Gibco Cat. No. 25030-081 , Life Technologies Corp. ; Sodium Pyruvate, available from Gibco Cat. No. 11360, Life Technologies Corp.; FBS available from Sigma- Aldrich Corp. in a ratio of 100: 1 : 1 : 1 : 10. On Day 1, about 24 hrs before EP, HEK293 cells were trypsinized, cell viability and cell number determined after which cells were passaged to fresh multilayer chamber flasks at 30-40% confluency. Cells were incubated at 37 °C with 5% C02.
[00198] On Day 2, EP of cells was executed. In short, cells were harvested, cell viability and cell number determined after which cells were pelleted down by spinning at lOOg for 5 min and the media aspirated. Cells were resuspended in EP buffer and pelleted down by spinning at lOOg for 5 min, then resuspended in an appropriate amount of EP Buffer to reach 50 x 106 cells/ml which was used as the cell stock. DNAs to be used for EP were prepared in sterile water at a final concentration of 5 mg/ml. For each sample used for OC-400 processing assembly, 0.4 ml of cell stock and DNA was placed in a sterile 1.5 ml eppendorf tube resulting in a final concentration of 50
Figure imgf000041_0001
100 μg/ml, 200 μg/ml or 400 μg/ml DNA as indicated in FIGS. 5-9 and cell density of 40 x 106 cells per sample. For each sample used for CL-2 processing assembly, 10 ml of cell stock and DNA was placed in 50 ml sterile conical tube resulting in a final concentration of 100 μg/ml DNA.
[00199] Samples were transferred into an OC-400 or CL-2 processing assembly (available from MaxCyte, Cat. No. OC-400R and CL2-R, MaxCyte Inc.) which followed the manufacture instructions for EP of HEK cells. Following EP, the cells were carefully pipetted out and transferred into 6- well tissue culture plates and incubated for 20 min at 37 °C with 5% C02, after which cells were removed and placed in a 50 ml conical tube containing pre- warmed plating media. Cell viability and cell density were determined. A portion of cells (i.e., 20 x 106 cells) was used for plating and the rest was cryopreserved.
[00200] For plating cells following EP, cells were pelleted down by spinning at lOOg for 5 min and then resuspended in pre- warmed plating media (cell density of 1 x 106 cells/ml). Cells were placed in 24-well tissue culture plates (poly-D-Lysine coated, Corning Biocoat™ (available from Corning Life Sciences) at a density of 0.4 x 106 cells/well and incubated at 37 °C with 5% C02. Media was replaced 4 hours later and then every 24 hours until the day of assaying. On Days 4 and 6, cells were assayed for OATP1B1 activity.
[00201] For cryopreservation, cells were pelleted then resuspended in freshly prepared ice-cold freezing media (9 parts plating medium and 1 part DMSO which was syringe filtered to sterilize) at a density of 10 x 106 cell/ml. Cryo vials were filled with 1 ml of this cell suspension, and placed on ice-cold Mr. Frosty freezing container (available from Thermal Scientific) stored in -80 °C freezer overnight after which the vials were stored in liquid nitrogen.
[00202] Cryopreserved cells were assayed for OATP1B1 activity. Notably, cells were plated in the same manner described above for plating cells following EP (which had not been cryopreserved) and assayed for OATP1B1 activity (as described below) at 48 hrs following plating thereof.
[00203] ASSAYING TRANSPORTER ACTIVITY -EXPERIMENTAL PROTOCOL AND RESULTS. In brief, substrate solution was prepared for OATPlBl* la and OATPlBl *lb using 2 μΜ estradiol- 17p-glucuromde (99% of cold Ε17βσ and 1% of [ Η]-Ε17βσ); for OATP1B3 using 2 μΜ CCK- 8 (99% of cold CCK-8 and 1% of [ H]-CCK-8); for OAT1 short using Ι μΜ Para- aminohippurate (PAH) (90% of cold PAH and 10% of [ H]-PAH); for OAT1 long using 1 μΜ or 3 μΜ Para-aminohrpurate (PAH) (90% of cold PAH and 10% of [ H]-PAH); for OAT3 using 1 μΜ or 2 μΜ Estrone-3-sulfate (99% of cold E3S and 1% of [ H]-E3S), for OCT1 and OCT2 using 30 μΜ GTetraethylammonium Bromide (100% [14C]-TEA); MATEl and MATE2K using 10 μΜ Metformin (100% [14C] -Metformin) or 10 μΜ Tetraethylammonium Bromide (100% [14C]-TEA); in Krebs-Henseleit Buffer pH 7.4 (available from Sigma, Cat. No. K3753, Sigma- Aldrich) and incubated at 37 °C for at least 20 min. Culture media was aspirated from cells to be assayed and cells washed thrice with pre-warmed KHB Buffer. Cells were subsequently incubated with Uptake Buffer at 37 °C for 10 min. For MATE1 and MATE2K, cells were washed and pre- incubated with KHB buffer containing 20 mM NH4CI for 10 min. Assays were initiated by adding 0.3 ml substrate solution into each well and incubated at 37 °C for 5 min with samples for OCT1 and OCT2 incubated for 10 min.
[00204] The reaction was quickly stopped after the incubation period by aspirating substrate solution from cells then washing cells thrice with cold Uptake Buffer. Cells were then incubated with lysing solution (M-per mammalian protein extraction reagent) for 15-20 minutes while being shaken. The substrate solution was triturated and 0.4 ml of the resultant cell lysis placed in 5 ml scintillation tube with 5 ml of scintillation liquid for analysis with scintillation counter.
[00205] As illustrated in FIG. 1, cell viability dropped 1-5% after EP relative to that of the cell stock. Additionally, after cryopreservation, cell viability dropped an additional 10-15% relative to that after EP. Nonetheless, even after EP and thaw from cryopreservation, cell viability is greater than 75%.
[00206] Cell morphology and uptake activity was examined following cryopreservation after 30 min recovery and 24 hours recover post-transfection. Table 5 illustrated cell morphology and uptake activity with 24 hours recovery was reduced compared to 30 min recovery.
Figure imgf000043_0001
[00207] Cell morphology and confluency of transfected cells thawed from cryopreservation were examined after various periods of time following plating at a density of 0.4 x 106 cells per well in 24-well poly-D-lysine coated Corning Biocoat™ plates. In particular, FIG. 2 illustrates OATP1B1 transiently transfected cells cultured at 4 hrs, 24 hrs and 72 hrs post plating. Additionally, cell confluency at 24 hrs, 48 hrs and 72 hrs post-plating of these cells is recorded in Table 6 below.
Figure imgf000044_0001
[00208] Desirably, after EP and cryopreservation, the cells form a monolayer on poly-D- lysine coated Corning Biocoat™ plates achieving 80-90% confluency at 24 hrs post-plating, 90%- 100% confluency at 48 hrs post-plating.
[00209] FIG. 4 illustrates cells, transiently transfected with MATE1, MATE2K,
OATP1B3, OAT1 long, OAT1 short, OAT3, and pCMV vector respectively, cultured at 24 hrs post plating after thawed from cryopreservation.
[00210] As illustrated in FIG. 5, the expression of Green Fluorescent Protein (GFP) in adhesion HEK293 cells was increased with increasing concentration of DNA. Additionally, GFP expression increased at the 48 hr timepoint relative to the 24 hr timepoint. In particular, GFP transfection efficiency by EP achieved 100% at 24 hrs with 200 μ /ηι1 DNA and 100% fluorescent cell staining at 48 hrs with 100 μg/ml DNA. Hence, GFP protein expression level in transfected cells increased with increased DNA concentration and at 48 hrs relative to 24 hrs.
[00211] Uptake activity of suspension cultured 293 cells transfected with OATP1B1 (pOATPlBl) and control vector (pCMV) were assayed at various time points following EP. In brief, transfected cells were plated at a density of 0.4 x 106 cells/well in 24-well poly-D-lysine coated Corning Biocoat™ plates following EP or after thaw from cryopreservation. OATP1B1 uptake activity and uptake ratio were determined using probe substrate, estradiol-17P- glucuronide, in both fresh plated cells ("fresh") and cryopreserved cells ("cryo") at various timepoints post plating as detailed in Table 7 below.
Figure imgf000045_0001
[00212] OATP1B1 uptake activity and uptake ratio in transfected cells following thaw from cryopreservation is consistent with those in freshly plated transfected cells. In both cells types 293 -F and FS293, the highest uptake activity and uptake ratio is observed at 24 hrs post plating.
[00213] Morphology and cell confluency of transfected cells (i.e., FS293 or 293-F) were examined at 24 hrs, 48 hrs and 72 hrs post-plating in 24-well poly-D-lysine coated Corning Biocoat™ plates at plating density of either 0.4 x 106 cells/well or 0.2 x 106 cells/well after thaw from cryopreservation. Cell confluency at 24 hrs post-plating are summarized below in Table 8. Cell confluency at 48 hrs and 72 hrs are similar to those achieved at 24 hrs (data not shown). Additionally, FIG. 3 provides images of transfected cells plated at (A) 0.4 x 106 cells per well and (B) 0.2 x 106 cells per well 24 hrs post-plating following thaw from cryopreservation at a confluence of 90-95% and 60-70%, respectively.
Figure imgf000045_0002
FS293 with OATPlBl in Excell 80-90% 30-50%
FS293 with pCMV vector in Excell 70-80% 50%
293 -F with pOATPlBl in CD293 90-95% 60-70%
293 -F with pCMV6 vector in CD293 90-95% 80%
[00214] For optimal assay performance, plating cells at a density of 0.4 x 106 is preferable to that of 0.2 x 106 as it achieves higher cell confluency and higher uptake activity.
Figure imgf000046_0001
[00215] Following EP, cell viability was examined using trypan blue and hemocytometer or cellometer.
[00216] As illustrated in FIG. 6, when using adhesion HEK293 cells, cell viability post EP dropped with increasing amounts of DNA used in EP. Nonetheless, cell viability following transfection with pOATPlBl was ranged from 89% to 77% and that following transfection with empty vector was 90%.
[00217] As illustrated in FIGS. 7A-7B, when using adhesion HEK293 cells, OATP1B1 mediated uptake of Estradiol- 17P-glucuronide in the fresh plated transient transfected adhesion HEK293 cells is time-dependent. Notably, uptake activity and uptake ratio increased with increasing amounts of DNA used in EP. However, OATP1B1 mediated uptake of Estradiol- 17 β- glucuronide reduced at the 96 hr timepoint relative to the 48 hr timepoint. Further, as illustrated in FIG. 8, the signal to noise ratio (i.e., uptake ratio) of estradiol- 17P-glucuronide increased with the increase of amount of DNA and assay incubation time, in adhesion HEK293 cells transfected with OATP1B1 relative to empty vector at 48 hrs post EP.
[00218] As illustrated in FIG. 9, when using adhesion HEK293 cells, estradiol- 17 β- glucuronide uptake in OATP1B1 transiently expressed HEK293 cells using small scale EP device and large scale EP device is consistent for both uptake activity and signal to noise ratio (i.e., uptake ratio). 100 μg/ml DNA was used in the experiments.
[00219] As illustrated in FIG. 10, when using adhesion HEK293 cells, OATP1B1 uptake activity is compared between the cells transfected using traditional lipid transfection reagent (control: lipofectamine 2000, available from Invitrogen) and EP using STX, MaxCyte Inc., Gaithersburg, MD. Notably, cells transfected using EP resulted in a pronouncedly greater signal to noise ratio relative to those cells transfected with lipid transfection reagent.
[00220] As illustrated in FIG. 11, when using adhesion HEK293 cells, OATP1B1 uptake activity in both freshly plated EP transfected cells and cells following thaw from cryopreservation was detectable.
[00221] Uptake activity of suspension cultured 293 cells transfected with OATPlBl *la, OATPlBl* lb, OATP1B3, OATl long, OATl short, OAT3, OCTl, OCT2, MATEl, MATE2K or control vector (pCMV) were assayed at 24 hrs post plating after thaw from cryopreservation. In brief, the transfected cells were plated at a density of 0.4 x 106 cells/well in 24- well poly-D- lysine coated Corning Biocoat™ plates following EP and after thaw from cryopreservation. SLC transporter uptake activity and uptake ratio were determined using probe substrates as indicated at 24 hrs post plating as detailed in Table 10 below.
Figure imgf000047_0001
OATP1B3 2 μΜ CCK-8 28.7 0.2 145
OATP1B3 2 μΜ CCK-8 77.0 0.79 98
OAT1 long 1 μΜ ΡΑΗ 13.1 0.3 39
OAT1 short 1 μΜ ΡΑΗ 9.7 0.3 29
OAT 1 long 3 μΜ ΡΑΗ 15.0 0.71 21
OAT3 1 μΜ E3S 44.7 1.2 38
OAT3 2 μΜ E3S 60.9 1.62 38
OCT1 30 μΜ TEA 127.6 5.63 23
OCT2 30 μΜ TEA 100.5 5.53 18
10 μΜ Metformin 71.4 6.0 12
MATE1
10 μΜ TEA 46.3 4.3 11
10 μΜ Metformin 33.5 5.2 6.5
MATE2K
10 μΜ TEA 46.6 6.1 7.6
[00222] As reflected in Table 10 above, the recombinant cells exhibited strong uptake activity towards their specific prototypical substrate each of which had an uptake ratio above 10. Notably, an uptake ratio above 5 indicates a successful process.
[00223] As reflected in Table 11 , the post-thaw viability for recombinant cryopreserved cells was determined to be above 90%.
Figure imgf000048_0001
OCT1 95.1%
OCT2 96.1%
[00224] Each of these recombinant cells as well as a control vector (pCMV) was examined 24 hrs post-plating (after cryopreservation). Confluency for each of these cells 24 hrs post-plating was 85% or greater as reflected in Table 12 below.
Figure imgf000049_0001
[00225] As illustrated in FIG. 12, each of the 8 cryopreserved recombinant cells formed a confluent monolayer following thawing, plating on Poly-D-Lysine plates and incubation for 24- hrs post-plating.
[00226] As illustrated in FIGS. 13A-19E and Tables 13-14, the kinetic and inhibition profiles examined in cryopreserved recombinant cells expressing a transporter protein was consistent with reported values. Specifically, as illustrated in FIGS. 13A-13C, the kinetics of PAH uptake by recombinant cells expressing OATl and inhibition profile of probenecid thereof is consistent with reported values. As illustrated in FIGS. 14A-14C, the kinetics of E3S uptake by recombinant cells expressing OAT3 and inhibition profile of probenecid thereof is consistent with reported values. As illustrated in FIGS. 15A-15F, the kinetics of TEA and metformin uptake by recombinant cells expressing OCT1 as well as inhibition profile thereof is consistent with reported values. As illustrated in FIGS. 16A-16E, the kinetics of TEA and metformin uptake by recombinant cells expressing OCT2 as well as inhibition profile is consistent with reported values. As illustrated in FIGS. 17A-17F, the kinetics of E17PG, E3S and rosuvastatin uptake by recombinant cells expressing OATPlBl* la as well as inhibition profile of E17PG uptake by cyclosporin A is consistent with reported values. As illustrated in FIGS. 18A-18E, the kinetics of E17PG, E3S and rosuvastatin uptake by recombinant cells expressing OATPlBl* lb as well as inhibition profile of E17PG uptake by cyclosporin A is consistent with reported values. As illustrated in FIGS. 19A-19E and Tables 13-14, the kinetics of CCK-8, E17pG and rosuvastatin uptake by recombinant cells expressing OATP1B3 as well as inhibition profile of CCK-8 uptake by cyclosporin A is consistent with reported values.
Figure imgf000050_0001
Figure imgf000050_0002
al. , Eur J
Pharmacol.,
2001
OCT1 Metformin Cimetidine 230 104 HEK293 Sumito I, et al.,
Cells JPET, 2011
OCT2 Metformin Cimetidine 195 124 HEK293 Sumito I, et al.,
Cells JPET, 2011
[00227] As previously discussed, rats, dogs and monkeys are all frequently used in preclinical testing in order to study early pharmacokinetics (i.e., ADME) and toxicity of potential new drugs. Therefore, the uptake of both Ε17βϋ and rosuvastatin was studied in both the presence and absence of sodium butyrate ("SB") in HEK-293 cells that overexpressed: (i) monkey Oatplbl ; (ii) dog Oatplb4; and (iii) rat Oatplb2, as compared to (iv) human OATPlBl *la (i.e., wild-type). The results were graphed and are shown in FIG. 31A and FIG. 3 IB. As shown in FIG. 31A and FIG. 3 IB, monkey Oatplbl, dog Oatplb4 and rat Oatplb2 all show significant uptake of both E17PG and rosuvastatin, considered to be prototypical substrates. Thus, monkey Oatplbl, dog Oatplb4 and rat Oatplb2, together with human O ATP IB, enable mechanistic studies to better understand, study and compare drug clearance in different species.
[00228] Additional assays of animal species were conducted. First, a time-course experiment was conducted to demonstrate the time-dependent uptake of the probe substrate via OATP/Oatps. Uptake of 2.0 μΜ estradiol-17P-glucuronide in human OATPlBl*la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 cells were determined at 1, 2, 5, 10, and 15 minutes, respectively at 37°C. The results are shown in
FIG. 32. Additionally, a kinetics assay was conducted of the uptake of E17PG in HEK-293 cells overexpressing monkey Oatplbl, dog Oatplb4 and rat Oatplb2 (following incubation of 5 minutes). Km and Vmax values were calculated according to Michaelis-Menten kinetics. The results are shown in FIG.33 and Table 15:
[00229] Furthermore, species differences of substrate specificity were examined for prototypical substrates and statins. Human OATPlBl *la and OATP1B3, monkey Oatplbl, dog Oatplb4, rat Oatplb2, and control cells were incubated with 2 μΜ estradiol- 17P-glucuronide, 2 μΜ estrone-3 -sulfate, or 2 μΜ CCK-8 for 5 minutes at 37°C; 0.2 μΜ pitavastatin, 0.2 μΜ atorvastatin, 30 μΜ pravastatin, or 50 nM simvastatin for 2 minutes at 37°C. The results are shown in FIG. 34A-FIG. 34G, respectively. Data is shown as the mean ± S.D. of three replicates (n = 3). Significant species differences were observed between human OATPIBI and preclinical species Oatplbs. Monkey Oatplbl demonstrated similar substrate specificity as human OATPIBI; dog Oatplb4 and rat Oatplb2 functions like human OATP1B3, as they both showed significant uptake of CCK-8. Compared to other species, dog Oatplb4 demonstrated similar or higher uptake of all tested substrates, except E17PG; rat Oatplb2 demonstrated similar (pitavastatin and simvastatin) or significantly higher activity for three prototypical substrates, atorvastatin and pravastatin.
Figure imgf000052_0001
[00230] Additionally, kinetic parameters (Km and Vmax) were determined for uptake of estradiol- 17 β-glucuronide (FIG. 35 A and FIG. 35B), rosuvastatin (FIG. 35C and FIG. 35D), and atorvastatin (FIG. 35E and FIG. 35F) in human OATPIBI* la, monkey Oatplbl, dog Oatplb4, and rat Oatplb2 after a 2-minute incubation at 37°C Control cells were included for all Km and Vmax determinations. Eight substrate concentrations were used in each kinetic determination. For each substrate concentration, the initial uptake rate was calculated by subtracting the initial rate determined in HEK cells expressing an empty vector from those obtained in HEK-293 overexpressing SLC transporter. Each point is an average of triplicate determinations. Kinetics were determined in at least two independent experiments and the values are summarized inFigure 35B, 35D and 35F.
[00231] Next, species differences of inhibitory profiles were determined. IC50 values were determined by co-incubating the cells with 1 μΜ substrates (E17PG or rosuvastatin) with cyclosporin A (FIG. 36A) or gemfibrozil (FIG. 36B) at a range of concentrations. For each inhibitor concentration, the uptake activity was calculated by subtracting uptake activity determined in HEK cells expressing an empty vector from those obtained in HEK overexpressing SLC transporter. Each point represents the mean value of three replicates and the solid lines represented the non-linear regression fitting. The curve represents one of two independent experiments.
EXAMPLE 2
DEVELOPMENT OF OATP1B1 SINGLE NUCLEOTIDE POLYMORPHISM PANEL
[00232] An OATP1B1 single nucleotide polymorphism panel was developed to allow investigation of drug response by different genetic backgrounds in the early stage of drug development. OATPlBl *la, 0ATP1B1*5, and 0ATP1B1 *15 were transiently overexpressed in HEK-293 cells and then cryopreserved. The expression levels of the recombinant proteins were quantitated and normalized in the haplotype cells versus wild type cells by targeted protein quantification via liquid chromatography/tandem mass spectrometry. Uptake of OATP1B1 prototypical substrate, estradiol-17P-glucuronide (E17PG), and statins was determined in OATPlBl* la, 0ATP1B1*5, 0ATP1B1*15, and control cells. Ε17βϋ uptake was reduced to 40% to 50% in 0ATP1B1*5 and * 15 cells compared to OATPlBl*la cells. Significant decrease in uptake activity was observed in 0ATP1B1*5 and * 15 for simvastatin, atorvastatin, pitavastatin, and rosuvastatin, but not for fluvastatin. The results are consistent with the clinical finding of impact of the genotypes on the pharmacokinetics of these statins. The new OATP1B1 single nucleotide polymorphism panel is, therefore, a useful tool to facilitate prediction of drug disposition in populations with different genotypes.
[00233] EXPERIMENTAL PROTOCOL AND RESULTS CORNING®
TRANSPORTOCELLS™ OATPlBl *la (Cat. No. 354859), 0ATP1B1*5 (Cat. No. 354878), 0ATP1B1* 15 (Cat. No. 354879), control cells (Cat. No. 354854), cell culture media components and assay buffer were obtained from Corning Life Sciences. Radiolabeled and non-radiolabeled chemicals were obtained from American Radiolabeled Chemicals or Sigma- Aldrich.
[00234] Cells were thawed and plated at a seeding density of 200K per well in 48-well poly-D-lysine coated plates (Corning Life Sciences) according to the manufacturer recommended procedure. The viability and recovery of the thawed 0ATP1B1 *5 (Cat. No. 354878) and 0ATP1B1 *15 cells is illustrated in FIG. 37A. Viability data and Uptake Ratio data for thawed OAT2, OAT4, OCTN2 HEK cells under the same conditions are illustrated in FIG. 37B, while viability data and Uptake Ratio data for thawed monkey Oatplbl, dog Oatplb4, and rat Oatplb2 HEK-293 cells under the same conditions are illustrated in FIG. 37C. FIG. 37D illustrates the cell mophorlogy and plated 0ATP1B1*5 and 0ATP1B1*15 cells.
[00235] The plated cells were re-fed with or without 2 mM sodium butyrate at 3 to 4 hours after plating. Uptake assays were performed at 24 hours post-plating at 37°C for F-MTX (5 μΜ for 10 min), E17PG (2 μΜ for 5 min), atorvastatin (0.5 μΜ for 2 min; no SB only), simvastatin (50 nM for 10 min), pitavastatin (0.2 μΜ for 2 min) and fluvastatin (1.0 μΜ for 2 min). For radiolabeled compounds, the cells were lysed in M-PER for 5 min at RT, then the cell lysates were ready for analysis. For unlabeled compounds, the cells were lysed in 80% acetonitrile for 20 min at RT, then the cell lysates were analyzed by LC-MS/MS following the method developed previously. The results of the assays are illustrated in FIGS. 38A-38F. Each bar in FIGS. 34A-34F represents the mean and S.D. of triplicate determinations. Under the condition of no SB, uptake of simvastatin was reduced to 36% for *5 and 0% for * 15; uptate of pitavastatin was reduced to 70% for *5 and 40% for *15; uptake of fluvastatin was reduced to 46% for *5 and less than 5% for *15.
[00236] Additional assays were conducted wherein kinetic parameters (Km and Vmax) were determined in OATPlBl*la, 0ATP1B1*5 and 0ATP1B1*15 after a 2-minute incubation at 37°C for E17PG (1.56 μΜ), pitavastatin (0.2 μΜ) and rosuvastatin (0.78 μΜ); control cells were also included. For each substrate concentration, the initial uptake rate was calculated by subtracting the initial rate determined in HEK cells expressing an empty vector from those obtained in HEK-293 over-expressing SLC transporter. Each point is an average of triplicate determinations. The results are illustrated in FIG. 39A-39C; FIG. 39D illustrates the Km (μΜ), Vmax (pmol/mg/min), and intrinsic clearance ("Clint"; μΐ/mg/min) calculated under Michaelis- Menten kinetics.
[00237] Cells were thawed and plated at the same density as the assays and re-fed with 2 mM sodium butyrate at 3 to 4 hours after plating. At 24-hours post-plating, cells were harvested, washed and then lysed using Native Membrane Protein Extraction Kit (Merck Millipore). Protein content was determined using a BCA kit (Thermo Fisher). 40 μg of protein per sample was then reduced with 10 mM DTT and alkylated with IAA in 50 mM ammonium bicarbonate digestion buffer. After adding stable isotope labeled internal standard peptide (NVTGFFQSF [KC13N15]), the samples were digested by trypsin at 37°C for 3 hours and then at 30°C overnight. At the end of digestion, the samples were mixed with an equal amount of 50/50 ACN/H2O containing 0.2% formic acid and centrifuged at 3,000 rpm for 20 min prior to LC- MS/MS analysis. For standard curve, the synthetic OATP1B1 surrogate peptide (NVTGFFQSFK) was prepared in 50/50 ACN/H20 containing 0.2% formic acid, then mixed with an equal amount of digestion matrix made from membrane extract prepared from Control Cells. LC-MS/MS was modified based on the published method (Ji C, et al., Analytica Chimica Acta (717):67-76 (2012); Wang L, et al, Drug Metab Dispos (43):367-374 (2015)). The process is graphically illustrated in FIG. 40, which is a schematic diagram of LC-MS/MS mediated targeted protein quantification.
[00238] Extract ion chromatogram of selected reaction monitoring (SRM) was conducted at m/z 588.0>m/z 961.8 transition (striped arrow on FIGS. 41A-41D) for AQUA® peptide (Sigma-Aldrich) and at m/z 591.9>m z 969.8 transition (solid arrow on FIGS. 37A-37D) for the stable isotope labeled internal standard in the tryptic digested samples from CORNING® TRANSPORTOCELLS™ OATPlBl *la, control cells, 0ATP1B1*5 and 0ATP1B1*15; the results are illustrated in FIGS. 41A-41D (peak retention time is at RT =16.6 min).
[00239] Expression in 0ATP1B1 *5 and *15 was comparable to that of OATPlBl* la when DNA concentrations of 300 μg/ml were reached, as illustrated in FIG. 42A. Testing proved lot-to-lot consistency. Specifically, uptake of 2 μΜ E17PG in both OATPlBl *la cells and control cells was determined at 5 minutes of incubation at 37°C. Four lots of OATPlBl* la cells were thawed and plated at the same time at 200k per well in a Corning 38-well poly-D- lysine coated plate; the uptake activity and uptake ratios are shown in FIG. 42B. A comparison of three lots of OATPlBl *la, one lot of 0ATP1B1 *5, one lot of 0ATP1B1*15, and control cells also demonstrated consistency of protein expression across the wild-type and SNPs, as illustrated in FIG. 42C.
[00240] HEK-293 cells transiently overexpressing OATP1B1 genetic variants, i.e.,
0ATP1B1*5, and 0ATP1B1*15, were developed and validated. The recombinant protein expression level in CORNING® TRANSPORTOCELLS™ 0ATP1B1*5 and *15 is consistent with wild-type OATPlBl *la cells. There was no detectable OATPIBI baseline in the parent HEK-293 cells. (3) Significantly impaired transport in 0ATP1B1*5 and *15 cells was observed for estradiol- 17P-glucuronide, F-MTX and statins (e.g., simvastatin, pitavastatin, rosuvastatin, and fluvastatin), which is aligned with clinical findings, with the exception of fluvastatin, which does not show significant differences in clinical fluvastatin AUC between * la and the two variant haplotypes *5 and *15. (4) CORNING® TRANSPORTOCELLS™ products evidence robust uptake ratios for all products, as well as consistent lot-to-lot uptake activity and consistent recombinant protein expression level.
EXAMPLE 3
DEVELOPMENT OF SUSPENSION ASSAY FOR CHARACTERIZING ACTIVITY OF DRUG TRANSPORTER PROTEINS IN CORNING® TRANSPORTOCELLS™
[00241] EXPERIMENTAL PROTOCOL. In this experiment, a suspension assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® TransportoCells™ was developed. More specifically, the use of a centrifugation method versus a vacuum manifold for separating unreacted substrate in characterizing the activity of Organic Anion-Transporting Polypeptide 1B1 was investigated. Corning® TransportoCells™ transiently transfected with the gene OATPlBl*la were obtained from Corning Life Sciences (Cat. No. 354859). In the Corning® TransportoCells™, the gene OATPIBI * la was delivered into HEK293 cells via electroporation and the HEK293 cells were recovered and cryopreserved 1 hour post-electroporation. In order to obtain suitable expression of the Organic Anion- Transporting Polypeptide 1B1 encoded by OATPlBl*la, the Corning® TransportoCells™ were thawed, cultured, and harvested.
[00242] More specifically, the Corning® TransportoCells™ were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in appropriate amount of plating media (detailed in Table 16) at a cell density of 1 x 106 cells/ml. The cells were cultured in T-175 Vented-Cap Culture Flasks with Poly-D- Lysine (hereinafter, "PDL"; available from Corning Life Sciences, Cat. No. 354539) with plating medium for 48 hours at 37 °C and 8% C02. The plating medium is detailed in Table 16. After 24 hours, sodium butyrate (obtained from Sigma) was added to the cells to reach final 5mM. After 48 hours, the cells were rinsed twice with Phosphate-Buffered Saline (hereinafter, "PBS", obtained from Corning).
Figure imgf000057_0001
*Plating media was sterilized using a 0.2 μπι filter and storing at 4°C for up to 2 weeks.
[00243] The cells were then harvested with 0.05% Trypsin (obtained from Sigma) and washed once with Hank's Balanced Salt Solution (hereinafter, "HBSS") buffer (with Ca2+ and Mg2+, obtained from Corning). Then, the cells were resuspended in HBSS (obtained from Corning) to a final cell density of 3x106 cells/ml. Two suspension assay experiments were then performed to characterize the activity of Organic Anion-Transporting Polypeptide 1B1 in the Corning® TransportoCells™.
[00244] In a first suspension assay experiment, use of a centrifugation method was investigated to separate excess substrate and cells. Referencing FIG. 20, in the first suspension assay experiment, the resuspended Corning® TransportoCells™ were aliquotted (200 μΐ per well at a density of 600k cells/well) into either a Corning® 96 Well Clear Round Bottom TC-Treated Microplate (available from Corning Life Sciences, Cat. No. 3799) or a Corning® 96 Well Clear V-Bottom TC-Treated Microplate (available from Corning Life Sciences, Cat. No. 3894). The activity of Organic Anion-Transporting Polypeptide 1B1 was characterized by initiating a reaction by adding either prewarmed 50 μΐ 5X substrate solution (50 μΐ HBSS buffer containing 25 μΜ Estradiol 17-β Glucuronide, hereinafter, "E17PG"; obtained from Sigma) or by adding fluorescent 50 μΐ 5X substrate solution (50 μΐ HBSS buffer containing either 25 μΜ fluorescein methotrexate, hereinafter, "FMTX"; obtained from Life Technologies or 25 μΜ 8- fluorescein-cAMP, hereinafter, "8-FcA"; obtained from BIOLOG Life Sciences). The cells were then incubated for 10 minutes at 37 °C. After the incubation time, the reaction was stopped by adding ice cold HBSS buffer (50 μΐ) to the cells and placing the microplates on ice. Then, the microplates were centrifuged at 3000 g for 1 minute at 4 °C. The supernatant was aspirated and the cells were washed three times with 200uL cold HBSS. The cells contacted with the non radioactive substrate solution containing E17PG were lysed with 80% Acetonitrile lysis buffer (made inhouse). The cells contacted with the fluorescent substrate solution containing FMTX or 8-FcA were lysed with M-per protein lysis buffer (200 μΐ^, obtained from Thermo Scientific). The cell lysis was then subjected to the appropriate protein analysis and/or fluorescence analysis to characterize the activity of Organic Anion-Transporting Polypeptide 1B1.
[00245] In a second suspension assay experiment, use of a vacuum manifold was investigated. Referencing FIG. 20, in the second suspension assay experiment, the resuspended Corning® TransportoCells™ were aliquotted (200 μΐ per well at a density of 600k cells/well) into a Corning® 96 Well Clear Round Bottom TC-Treated Microplate (available from Corning Life Sciences, Cat. No. 3799). The activity of Organic Anion-Transporting Polypeptide 1B1 was characterized by initiating a reaction by adding either prewarmed 50 μΐ 5X substrate solution (50 μΐ HBSS buffer containing 25 μΜ E17PG; obtained from Sigma) or by adding 50 μΐ fluorescent 5X substrate solution (50 μΐ HBSS buffer containing 25 μΜ FMTX; obtained from Life Technologes; or 25 μΜ 8-FcA; obtained from BIOLOG Life Sciences). The cells were then incubated for 10 minutes at 37 °C. After the incubation time, the reaction was stopped by adding ice cold 50 μΐ HBSS buffer and placing the microplates on ice.
[00246] Then, the cells were transferred to FiltrEX™ 96 Well Filter Plates with 0.66 mm
Thick Glass Fiber Filter (available from Corning Life Sciences, Cat. No. 3511) and a vacuum was applied. In this method, substrate solution flows through the filter plate and is collected in the receiver plate while insoluble particles, such as, e.g. , membrane vesicles or cells, are trapped on the filter plate. The cells trapped on the filter plate were washed three times with cold HBSS. The cells contacted with the non radioactive substrate solution containing E17PG were lysed with 80% Acetonitrile lysis buffer ( made inhouse). The cells contacted with the fluorescent substrate solution containing FMTX or 8-FcA were lysed with M-per protein lysis buffer (200 μΐ^, obtained from Thermo Scientific). The cell lysis was collected into a new receiver plate by vacuum. The cell lysis was then subjected to the appropriate protein analysis and/or fluorescence analysis to characterize the activity of Organic Anion-Transporting Polypeptide 1B1.
[00247] A positive control was provided via an adherent assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® Transporto Cells™. Corning® TransportoCells™ transiently transfected with the gene OATPlBl * la were obtained from Corning Life Sciences (Cat. No. 354859). In order to obtain suitable expression of the Organic Anion-Transporting Polypeptide 1B1 encoded by OATPlBl * la, the Corning® TransportoCells™ were thawed, cultured, and harvested. More specifically, the Corning® TransportoCells™ were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in plating media (obtained from Table 16) at a cell density of 1 x 106 cells/ml. The cells were cultured via plating in a 24- well PDL- Treated Plate (cell density of 250K cells/well; obtained from Corning Life Sciences) with plating medium for 48 hours at 37 °C and 8% C02. The plating medium is detailed in Table 16. After 24 hours, cells were refed by 400uL plating media supplemented with 5mM sodium butyrate (obtained from Sigma). After 48 hours, cells were washed three times using 0.4 niL prewarmed HBSS (Corning). Then 0.3mL substrate solution containing 5uM FMTX were added to the cells and the cells were incubated for l Omin at 37 degree. After lOmin incubation time, the cells were washed 3 times using 0.4mL cold HBSS. The cells were lysed and subjected to the BCA protein analysis and/or fluorescence analysis to characterize the activity of Organic Anion-Transporting Polypeptide 1B1.
[00248] RESULTS. AS set forth in Table 17 below, cells incubated in the Corning® 96 Well Clear V-Bottom TC-Treated Microplate in the centrifugation method exhibited the highest uptake ratio (i.e., S N = 102) in the first suspension assay experiment. As also shown in Table 17, cells incubated in the Corning® 96 Well Clear V-Bottom TC-Treated Microplate in the centrifugation method of the first suspension assay experiment exhibited favorable well to well variation, i.e., CV, (n=6, CV < 15%) with the fluorescent substrate FMTX. Without being bound by the theory, it is believed that a decrease in the uptake ratio and an increase in CV in the centrifugation method of the first suspension assay exhibited by cells incubated in the Corning® 96 Well Clear Round Bottom TC-Treated Microplate was due to difficulty in forming a tight congregated cell pellet during centrifugation and/or to pellet loss during washing.
Figure imgf000060_0001
[00249] Additionally, as shown in Table 18 below, the addition of the substrate solution containing non-radioactive E17PG versus the substrate solution containing fluorescent FMTX to cells in the vacuum manifold of the second suspension assay experiment exhibited similar uptake ratios. Without being bound by the theory, it is believed that the substrate was not trapped on the filter plate in vacuum manifold of the second suspension assay experiment, which means, the low uptake ratio with vacuum manifold is not due to substrate trapped on the filter plate, but due to the different way of separating unreacted substrate with the cells.
Figure imgf000060_0002
manifold with
nonradioactive
Compound
[00250] An appropriate suspension assay protocol employing the centrifugation method is depicted in FIG. 21.
EXAMPLE 4
CHARACTERIZATION OF CULTURING CONDITIONS AND CELL DENSITY FOR CRYO PRESERVED,
TRANSIENTLY TRANSFECTED HEK293 CELLS
[00251] EXPERIMENTAL PROTOCOL. In this experiment, a suspension assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® TransportoCells™ was further developed. More specifically, the effect of culturing conditions and cell density per well in the assay on the activity of Organic Anion-Transporting Polypeptide 1B1 in Corning® TransportoCells™ was investigated. With regard to culturing conditions, the effect of shaker flask culturing, and T-flask culturing on the activity of Organic Anion- Transporting Polypeptide 1B1 in Corning® TransportoCells™ was investigated. Corning® TransportoCells™ transiently transfected with the gene OATPlBl*la were obtained from Corning Life Sciences (Cat. No. 354859). With regard to cell density, the effect of cell density in the Suspension Assay on the activity of Organic Anion-Transporting Polypeptide 1B1 in Corning® TransportoCells™ was investigated. In order to obtain suitable expression of the Organic Anion-Transporting Polypeptide 1B1 encoded by OATPlBl*la, the Corning® TransportoCells™ were thawed, cultured via shaker flask culturing, or T-flask culturing, and harvested. More specifically, the Corning® TransportoCells™ were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in plating media (obtained from Table 16) at a cell density of 1 x 106 cells/ml.
[00252] In a first shaker flask culturing experiment, the cells were cultured in Erlenmeyer shaker flasks (obtained from Corning) with CD293 media (obtained from Life Technologies) for 48 hours at 37 °C and 8% C02 and with shaking at 100 RPM. After 24 hours, sodium butyrate (to a final concentration of 5 rriM, obtained from Sigma) was added to the cells. After 48 hours, the cells were harvested via centrifugation. Cell viability and cell number were determined, as previously described. The cells were resuspended after centrifugation in HBSS (obtained from Corning) and aliquotted into a Corning® 96 Well Clear V-Bottom TC-Treated Microplate (obtained from Corning Life Sciences, Cat. No. 3894) to a final cell density of 100K cells/well, 200K cells/well, or 300K cells/well. The cells were then assayed in the microplate to characterize the activity of Organic Anion-Transporting Polypeptide 1B1 following the centrifugation method described in Example 2.
[00253] In a second T-flask culturing experiment, the cells were cultured in either
Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (available from Corning Life Sciences, Cat. No. 354539) or in Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap (available from Corning life Sciences, Cat. No. 353112) via plating in attached form. The Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap were TC-treated. The cells were cultured with plating medium for 48 hours at 37 °C and 8% C02. The plating medium is detailed in Table 16. After 24 hours, sodium butyrate (to a final concentration of 5 mM, (obtained from Sigma) was added to the cells. After 48 hours, the cells were rinsed twice with PBS (obtained from Corning). The cells cultured in the BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap were harvested with 0.05% Trypsin (obtained from Sigma). Cell viability and cell number were determined, as previously described. The cells were then washed once with HBSS buffer (with Ca2+ and Mg2+, obtained from Corning). The cells cultured in the Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap were harvested with Dulbecco's PBS (hereinafter, "D-PBS"; obtained from Corning). Cell viability and cell number were determined, as previously described. The cells were then washed once with HBSS buffer (with Ca2+ and Mg2+, obtained from Corning). The cells were resuspended after harvesting in appropriate volume of HBSS to reach 1 x 106 cells/ml, and aliquotted into a Corning® 96 Well Clear V-Bottom TC-Treated Microplate (obtained from Corning Life Sciences, Cat. No. 3894) to a final cell density of 100K cells/well, 200K cells/well, or 300K cells/well. The cells were then assayed in the microplate to characterize the activity of Organic Anion-Transporting Polypeptide 1B1 following the centrifugation method described in Example 2. [00254] RESULTS. AS shown in FIG. 22A, the cells cultured in the Erlenmeyer shaker flasks in the first shaker flask culturing experiment and the cells cultured in the Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap in the second T-flask culturing experiment both exhibited high viability of 90% and good cell recovery at harvest. Further, as shown in FIG. 22B, the cells cultured in the Erlenmeyer shaker flasks exhibited higher cell doubling as compared to the cells cultured in the Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap. Without being bound by the theory, it is believed that the higher cell doubling of the Erlenmeyer shaker flasks as compared to the cells cultured in the Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap was likely due to minimizing cell loss at harvest. Cell doubling was calculated based on cell recovery after harvest and washing divided by the initial amount of cells added.
[00255] As shown in FIG. 23 A, cells cultured in Corning® BioCoat™ PDL 175 cm2
Rectangular Straight Neck Cell Culture Flasks with Vented Cap exhibited ~2-fold higher uptake activity than cells cultured in Erlenmeyer shaker flasks. Additionally, as shown in FIGS. 23A and 23B, the cells cultured in Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flasks with Vented Cap exhibited an overall increase in uptake activity and uptake ratio with increasing cell density (i.e., between 100K cells/well and 300K cells/well). A cell density of 200K cells/well and above formed a suitable sized pellet. Additionally, in all conditions investigated, CV (n=6) between different wells was within 20%.
EXAMPLE 5
DEVELOPMENT AND CHARACTERLZATION OF ASSAY-READY TRANSPORTOCELLS
[00256] EXPEP MENTAL PROTOCOL. In this experiment, Assay-Ready TransportoCells were developed. Additionally, the effect of culturing conditions on the activity of Organic Anion-Transporting Polypeptide 1B1 in TransportoCells was investigated. With regard to culturing conditions, the effect of culturing media, culturing vessel, culturing time, and the addition of sodium butyrate to a final concentration of 5 mM during culture on the activity of Organic Anion-Transporting Polypeptide 1B1 was investigated. [00257] HEK293 cells (obtained from Life Technologies) were cultured in Corning® erlenmeyer shaker flasks(available from Corning Inc. Life Sciences) using CD293 media (life tech) supplemented with 4mM L-Glutamine (Gibco) and Penicillin-Streptomycin (10,000 units/ml; available from Gibco Cat. No. 15140-122, Life Technologies Corp On Day 1, about 24 hours before EP, HEK293 cells viability and cell number were determined, as previously described. Then, the cells were centrifuged down. The cell pellet was resuspended in supplemented CD293 media to a final 0.7 x 106 cells/ml in Corning erlenmeyer shaker flasks. The cells were incubated at 37 °C with 8% C02 for 24 hours.
[00258] After 24 hours, EP of the cells was executed. HEK293 cells were transiently transfected and recovered using the same EP protocol as described in Example 1. In short, the cells were harvested, cell viability and cell number determined after which cells were pelleted down by spinning at lOOg for 5 min and the media aspirated. Cells were resuspended in EP buffer (obtained from Maxcyte), pelleted down by spinning at 1 OOg for 5 min, then resuspended in an appropriate amount of EP Buffer (obtained from Maxcyte) to reach a cell density of 100 x 106 cells/ml (which was used as the cell stock). OATPlBl*la DNA to be used for EP was prepared in sterile water at a final concentration of 5 mg/ml. For each sample used for OC-400 processing assembly, 0.4 ml of cell stock and OATPlBl*la DNA was mixed in a sterile 1.5 ml eppendorf tube resulting in a final concentration of 300 μg/ml OATPlBl *la DNA and cell density of 40 x 106 cells per sample. For each sample used for CL-2 processing assembly, 10 ml of cell stock and OATPlBl*la DNA was placed in a 50 ml sterile conical tube resulting in a final concentration of 300 μ^πύ OATPlBl*la DNA.
[00259] Samples were transferred into an OC-400 or CL-2 processing assembly (available from MaxCyte, Cat. No. OC-400R and CL2-R, MaxCyte Inc.) which followed the manufacturer's instructions for EP of HEK cells. Following EP, the cells were transferred into Erlenmeyer shaker flasks and incubated for 20 min at 37 °C and 8% C02. After 20min first recovery, supplemented CD293 media was added into the shaker flask to a final 1 x 106 cells/ml. Cells were further recovered for lhour at 37 °C and 8% C02, 100RPM. After 1 hour recovery, the cells were either cultured in the Erlenmeyer shaker flasks (i.e., cultured in suspension), or were transferred to Corning® BioCoat™ PDL 175 cm2 Rectangular Straight Neck Cell Culture Flask with Vented Cap (available from Corning Life Sciences, Cat. No. 354539; hereinafter, "PDL-Treated T-175 Flasks") or Falcon® 175 cm2 Rectangular Straight Neck Cell Culture Flask with Vented Cap (available from Corning life Sciences, Cat. No. 353112; hereinafter, "TC- treated T-175 Flasks") (i.e., cultured in attached form) for culturing. The culturing conditions employed (i.e., the culturing media, culturing vessel, culturing time, and whether sodium butyrate was added) are detailed in Tables 19-20. The Positive and Negative Controls employed are also detailed in Table 19.
Figure imgf000065_0001
11 Assay Control: OATPlBl* la cells lot 4112001 (the same batch of OATPlBl*la, TransportoCells™ cryo-freeze immediately post EP
12 Assay Control: Control Cells lot 4286010
Negative Control
Figure imgf000066_0001
[00260] After the appropriate culturing time, the cells cultured in the Erlenmeyer flasks were harvested via centrifugation at lOOg for 5-10min, the cells cultured in the PDL- Treated T- 175 Flasks were harvested with 0.05% Trypsin (obtained from Sigma), and the cells cultured in the TC-Treated T-175 Flasks were harvested with D-PBS (obtained from Corning). The cells were counted and viability was assessed. The cells were then cryopreserved. For cryopreservation, cells were pelleted down and then resuspended in freshly prepared ice-cold freezing media (9 parts culturing medium and 1 part DMSO which was syringe filtered to sterilize, obtained from Sigma) at a density of 10 x 106 cells/ml. Cryo vials were filled with 1 ml of this cell suspension, and placed on ice-cold Mr. Frosty freezing container (available from Thermal Scientific) stored in -80 °C freezer overnight after which the vials were stored in liquid nitrogen. [00261] Following cryopreservation, the cells were thawed, counted, and the activity of
Organic Anion-Transporting Polypeptide 1B1 was assessed immediately post-thaw following the centrifugation method described in Example 2.
[00262] A control was provided via an adherent assay for characterizing the activity of a drug transporter protein in cryopreserved, Corning® TransportoCells™. Corning® TransportoCells™ transiently transfected with the gene OATPlBl*la were obtained from Corning Life Sciences (Cat. No. 354859). In order to obtain suitable expression of the Organic Anion-Transporting Polypeptide 1B1 encoded by OATPlBl*la, the Corning® TransportoCells™ were thawed, cultured, and harvested. More specifically, the Corning® TransportoCells™ were thawed in a water bath at 37 °C for about 2 minutes, pelleted down by spinning at lOOg for 5 minutes, and the cell pellet was resuspended in appropriate volume of HBSS buffer (with Ca2+ and Mg2+, obtained from Corning) at a density of 1 x 106 cells/ml. The cells were then assayed in the microplate to characterize the activity of Organic Anion- Transporting Polypeptide 1B1 following the centrifugation method described in Example 2.
[00263] RESULTS. AS set forth in Table 21 below, cells cultured in Erlenmeyer Shaker
Flasks and cells cultured in PDL- Treated T-175 Flasks exhibited a viability of -90% and good cell doubling at harvest.
Figure imgf000067_0001
Form 10%FBS) 175 Flasks
Attached CD293+10%FBS TC-Treated T- 74.60% 2.1X Medium Form Media 175 Flasks
*Culturing Time to Harvest - 48 Hours; Sodium Butyrate (5 mM) was added 24 Hours Prior to Harvest; Cells were cryopreserved at a cell density of 10 x 106cells/ml.
**The handling is rated from easy (#1) to medium (#2) to difficult (#3) for the above culturing conditions respectively.
[00264] As shown in FIG. 24, the cells cultured in Erlenmeyer Shaker Flasks, PDL-
Treated T-175 Flasks, TC-Treated T-175 Flasks with plating media, and TC-Treated T-175 Flasks with CD293 media exhibited an uptake ratio of > 50. Additionally, the cells cultured in the attached form (i.e., PDL-Treated T-175 Flasks and TC-Treated T-175 Flasks) exhibited a 2- fold higher uptake activity relative to the cells cultured in suspension (i.e., Erlenmeyer Shaker Flasks). For all conditions, CV was within 15%.
[00265] As shown in FIG. 25A, cell doubling increased from 24 hours to 72 hours culturing time for cells cultured in Erlenmeyer Shaker Flasks and for cells cultured in PDL- Treated T-175 Flasks. Additionally, as shown in FIG. 25B, uptake activity immediately post- thaw peaked at 48 hours. Without being bound to the theory, it is believed that culturing time may be adjusted based on the time frame for performing the activity assay. As shown in FIG. 26, uptake activity was boosted by from about 3 fold to 10 fold in cells cultured with 5 mM sodium butyrate as compared to cells cultured without sodium butyrate.
EXAMPLE 6
FURTHER DEVELOPMENT OF SUSPENSION ASSAY AND PLATING ASSAY FOR CHARACTERIZING RECOMBINANT SLC TRANSPORTER ACTIVITY IN ASSAY-READY TRANSPORTOCELLS
[00266] EXPERIMENTAL PROTOCOL. In this experiment, assays for characterizing the activity of a drug transporter protein in cryopreserved, Assay-Ready TransportoCells were further developed. More specifically, the timing of performing a suspension assay versus a plating assay in characterizing the activity of Organic Anion- Transporting Polypeptide 1B1 in Assay-Ready TransportoCells was investigated. Cryopreserved, Assay-Ready TransportoCells were manufactured as in Example 4. As in Example 4, the cryopreserved, Assay-Ready TransportoCells were cultured in Erlenmeyer shaker flasks, PDL-Treated T-175 Flasks, or TC- treated T-175 Flasks with plating media or with CD293 media. The assay control and negative control were as described in Example 4.
[00267] In a first suspension assay experiment, the cryopreserved, Assay-Ready TransportoCells were thawed in HBSS buffer (obtained from Corning). Then, a suspension assay was conducted to characterize activity of the Organic Anion- Transporting Polypeptide 1B1 encoded by OATPlBl * la. The suspension assay was conducted using a centrifugation method either immediately following thaw from cryopreservation or 1 hour post-thaw from cryopreservation. Where the suspension assay was conducted 1 hour post-thaw, the cells were incubated at 37 °C in suspension. The suspension assay using the centrifugation method was as described in Example 2.
[00268] In a second plating assay experiment, the cryopreserved, Assay-Ready TransportoCells were thawed in plating media (obtained from Table 16). The cells were plated on PDL treated 24 well plate (Corning) and incubated for 4 hours, allowing the cells to attach to the plate. Then, a plate assay was conducted to characterize activity of the Organic Anion- Transporting Polypeptide 1B1 encoded by OATPlBl * la. The plate assay was conducted 4 hours post-thaw from cryopreservation.
[00269] RESULTS. AS shown in FIG. 27, cells assayed for activity at 1 hour post-thaw via suspension assay exhibited increased uptake activity relative to suspension assays conducted for activity at 0 hours post-thaw. Without being bound by the theory, it is believed that performance of the suspension assay at 1 hour post-thaw allowed the cells to recover from cryopreservation. Further, cells assayed for activity at 4 hours post-thaw via plate assay exhibited comparable (slightly higher) uptake activity relative to cells assayed for activity via suspension assay at 0 hours post-thaw.
[00270] Of note, as shown in FIG. 28, cells assayed for activity via suspension assays exhibited higher uptake ratio relative to cells assayed for activity at 4 hours post-thaw via plate assay. Specifically, the uptake ratio of cells assayed for activity via suspension assays was from about 50 to 150. In contrast, the uptake ratio of cells assayed for activity at 4 hours post-thaw via plate assay was from about 10 to about 30.
EXAMPLE 7
CHARACTERIZATION OF EFFECT OF THAWING MEDIA ONSLC TRANSPORTER ACTIVITY IN ASSAY-READY
TRANSPORTOCELLS
[00271] EXPERIMENTAL PROTOCOL. In this experiment, the effect of thawing media on the activity of Organic Anion- Transporting Polypeptide 1B1 in Assay-Ready TransportoCells was investigated. Cryopreserved, Assay-Ready TransportoCells were made as in Example 4. As in Example 4, the cryopreserved, Assay-Ready TransportoCells were cultured in Erlenmeyer shaker flasks, PDL-Treated T-175 Flasks, or TC -treated T-175 Flasks with plating media or with CD293 media. The assay control and negative control were as described in Example 4.
[00272] In a first thaw media experiment, the cryopreserved, Assay-Ready TransportoCells were thawed in HBSS buffer (obtained from Corning), pelleted down, and resuspended in HBSS. Viability was assessed and cells were counted. In a second thaw media experiment, the cryopreserved, Assay-Ready TransportoCells were thawed in plating media (obtained from Table 16), pelleted down, and resuspended in plating media. Cell viability and cell number were determined, as previously described.
[00273] RESULTS AS shown in FIG. 29, the cells thawed in Plating Media exhibited significantly higher viability as compared to cells thawed in HBSS Buffer (n=6, p = 0.0245<0.05). Appropriate culturing conditions are depicted in FIG. 30.
[00274] It will be appreciated by those skilled in the art that changes could be made to the embodiments described above without departing from the broad inventive concept thereof. It is understood, therefore, that this disclosure is not limited to the particular embodiments disclosed, but is intended to cover modifications that are within the spirit and scope of the disclosure, as defined by the appended claims. [00275] All documents cited are incorporated herein by reference; the citation of any document is not to be construed as an admission that it is prior art with respect to the present disclosure.
[00276] It is to be further understood that where descriptions of various embodiments use the term "comprising," and/or "including" those skilled in the art would understand that in some specific instances, an embodiment can be alternatively described using language "consisting essentially of or "consisting of."
[00277] It should be understood that every maximum numerical limitation given throughout this specification includes every lower numerical limitation, as if such lower numerical limitations were expressly written herein. Every minimum numerical limitation given throughout this specification will include every higher numerical limitation, as if such higher numerical limitations were expressly written herein. Every numerical range given throughout this specification will include every narrower numerical range that falls within such broader numerical range, as if such narrower numerical ranges were all expressly written herein.
[00278] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which the claimed subject matter belongs. The terminology used in the description herein is for describing particular embodiments only and is not intended to be limiting. As used in the specification and appended claims, the singular forms "a," "an," and "the" are intended to include the plural forms as well, unless the context clearly indicates otherwise.

Claims

What is claimed is:
1. A recombinant cell comprising one or more transiently overexpressed genes encoding a drug transporter protein, wherein:
the recombinant cell is cryopreserved, and
activity of the drug transporter protein is detectable in a population of the recombinant cells prior to cyropreservation at an uptake ratio of at least 5.
2. The recombinant cell of claim 1, wherein the activity of the drug transporter protein would be detectable in a population of the recombinant cells following thaw from cryopreservation at an uptake ratio of at least 5.
3. The recombinant cell of claim 2, wherein the activity of the drug transporter protein would be detectable in the population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150.
4. The recombinant cell of claim 1 , wherein: the activity of the drug transporter protein would be detectable in a plated population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 30 within 4 hours of thawing.
5. The recombinant cell of claim 1, wherein:
the activity of the drug transporter protein would be detectable in a suspended population of the recombinant cells following thaw from cryopreservation at an uptake ratio of from about 5 to about 150 within 1 hour of thawing.
6. The recombinant cell of claim 1, wherein the drug transporter protein is selected from the group consisting of an ATP binding cassette transporter and a solute carrier transporter protein.
7. The recombinant cell of claim 6, wherein the one or more transiently overexpressed genes is selected from the group consisting of MDRl/Mdrla/Mdrlb, MRPl/Mrpl, MRP2/Mrp2, MRP3/Mrp3, MRP4/Mrp4, MRP5/Mrp5, MRP6/Mrp6, MRP7/Mrp7, MRP 8/Mrp8, BCRP/Bcrp, BSEP/Bsep, OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATE 1 /Mate 1, MATE2K/Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof.
8. The recombinant cell of claim 6, wherein the one or more transiently overexpressed genes is selected from the group consisting of OATP2/Oatp2, OATPlB3/Oatplb3, OATl/Oatl, OAT2/Oat2, OAT3/Oat3, OAT4/Oat4, OCTl/Octl, OCT2/Oct2, OATPl/Oatpl, PEPTl/Peptl, PEPT2/Pept2, OCTNl/Octnl, OCTN2/Octn2, MATE 1 /Mate 1, MATE2K Mate2, URATl/Uratl, ASBT/Asbt, NTCP/Ntcp, and a combination thereof.
9. The recombinant cell of claim 8, wherein the OATP2/Oatp2 is selected from the group consisting of OATPlBl *la, OATPlBl* lb, 0ATP1B1*5, 0ATP1B1 *15, and combinations thereof.
10. The recombinant cell of claim 9, wherein said OATP2/Oatp2 is OATPlBl *la.
11. The recombinant cell of claim 9, wherein said OATP2/Oatp2 is OATPlBl* lb.
12. The recombinant cell of claim 9, wherein said OATP2/Oatp2 is 0ATP1B1*5.
13. The recombinant cell of claim 9, wherein said OATP2/Oatp2 is 0ATP1B1* 15.
14. The recombinant cell of claim 1, wherein the one or more transiently overexpressed genes is derived individually from a human or an animal species selected from the group consisting of a mouse, a rat, a guinea pig, a dog, and a monkey.
15. The recombinant cell of claim 14, wherein the one or more transiently overexpressed genes encodes a solute carrier transporter protein selected from the group consisting of monkety Oatplbl, monkey Oatplb3, dog Oatplb4, rat Oatplb2, rat Oatplal, rat Oatpla4, and cominations thereof.
16. The recombinant cell of claim 1, wherein the cell comprises a hepatocyte.
17. The recombinant cell of claim 1 , wherein the cell comprises an endothelial cell.
18. A process of preparing cryopreserved transiently transfected recombinant cells, the process comprising:
transiently transfecting cells with one or more genes encoding a drug transporter protein to provide the transiently transfected recombinant cells, and
cryopreserving the transiently transfected recombinant cells within 48 hours of transfection, wherein a population of the transiently transfected recombinant cells transiently overexpress the one or more genes encoding the drug transporter protein at a detectable level prior to cryopreserving the transiently transfected recombinant cells, and wherein the detectable level prior to cryopreserving is an uptake ratio of at least 5.
19. The process of claim 18, wherein transient transfection of the cells comprises electroporation.
20. The process of claim 18, wherein the transiently transfected recombinant cells are cryopreserved at about 24 hours to about 48 hours post transfection.
21. The process of claim 18, wherein:
a population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation, and
the detectable level following thaw from cryopreservation is an uptake ratio of at least 5.
22. The process of claim 18, wherein:
a suspended population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation within 1 hour post thaw.
23 The process of claim 22, wherein the detectable level following thaw from cryopreservation is an uptake ratio of from about 5 to about 150.
24. The process of claim 18, wherein:
a plated population of the transiently transfected recombinant cells would overexpress the one or more genes encoding the drug transporter protein at the detectable level following thaw from cryopreservation within 4 hours post thaw.
25. The process of claim 24, wherein the detectable level following thaw from cryopreservation is an uptake ratio of from about 5 to about 30.
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Cited By (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114214361A (en) * 2022-01-07 2022-03-22 中国农业科学院兰州兽医研究所 Construction method and application of URAT1 humanized mouse model
CN114410682A (en) * 2022-02-08 2022-04-29 美康生物科技股份有限公司 Method for transient expression of target protein by 293T cell and application thereof
CN114875068A (en) * 2022-04-27 2022-08-09 安徽省立医院(中国科学技术大学附属第一医院) Novel neuron labeling technology
RU2815047C1 (en) * 2023-07-25 2024-03-11 Федеральное государственное бюджетное образовательное учреждение высшего образования "Рязанский государственный медицинский университет имени академика И.П. Павлова" Министерства здравоохранения Российской Федерации Method of testing medicinal substances for belonging to substrates of polypeptide transporting organic anions 1b1

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2003072759A2 (en) * 2002-02-28 2003-09-04 Vanderbilt University Cloning and characterization of slc26a6, slc26a1, and slc26a2 anion exchangers
WO2014043170A1 (en) * 2012-09-11 2014-03-20 Corning Incorporated Consumable cryopreserved cells transiently overexpressing gene(s) encoding drug transporter proteins(s) and/or drug metabolizing enzyme(s)

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2003072759A2 (en) * 2002-02-28 2003-09-04 Vanderbilt University Cloning and characterization of slc26a6, slc26a1, and slc26a2 anion exchangers
WO2014043170A1 (en) * 2012-09-11 2014-03-20 Corning Incorporated Consumable cryopreserved cells transiently overexpressing gene(s) encoding drug transporter proteins(s) and/or drug metabolizing enzyme(s)

Non-Patent Citations (8)

* Cited by examiner, † Cited by third party
Title
CHEN J ET AL: "Application of large-scale transient transfection to cell-based functional assays for ion channels and GPCRs", METHODS IN ENZYMOLOGY, ACADEMIC PRESS, US, vol. 485, no. C, 1 January 2010 (2010-01-01), pages 293 - 309, XP009174426, ISSN: 0076-6879, DOI: 10.1016/B978-0-12-381296-4.00017-8 *
JI C ET AL., ANALYTICA CHIMICA ACTA, 2012, pages 67 - 76
LI NA ET AL: "Characterization of ABC transporters and SLC transporters in sandwich cultured human cryopreserved hepatocytes", DRUG METABOLISM REVIEWS; 17TH NORTH AMERICAN REGIONAL INTERNATIONAL-SOCIETY-FOR-THE-STUDY-OF-XENOBIOTICS (ISSX) MEETING; ATLANTA, GA, USA; OCTOBER 16 -20, 2011, NEVA PRESS, UNITED STATES, vol. 43, no. Suppl. 2, Sp. Iss. SI, 1 November 2011 (2011-11-01), pages 192, XP002716667, ISSN: 0360-2532 *
MONKS NOEL R ET AL: "Potent cytotoxicity of the phosphatase inhibitor microcystin LR and microcystin analogues in OATP1B1- and OATP1B3-expressing HeLa cells", MOLECULAR CANCER THERAPEUTICS, AMERICAN ASSOCIATION OF CANCER RESEARCH, US, vol. 6, no. 2, 1 February 2007 (2007-02-01), pages 587 - 598, XP002716668, ISSN: 1535-7163, DOI: 10.1158/1535-7163.MCT-06-0500 *
NIEMI M, PHARMACOL REV., 2011, pages 157
WANG L ET AL., DRUG METAB DISPOS, 2015, pages 367 - 374
WRIGHT STEVE ET AL: "Rapid screening of human OATP1B1 and OATP1B3 mediated drug interactions in stably transfected human embryonic kidney HEK-293 cell lines using flow cytometry and fluorescence microplate methods", DRUG METABOLISM REVIEWS, NEVA PRESS, UNITED STATES, vol. 43, no. Suppl. 2, Sp. Iss. SI, 1 November 2011 (2011-11-01), pages 208 - 209, XP002716665, ISSN: 0360-2532 *
ZAMAN ET AL: "Cryopreserved cells facilitate cell-based drug discovery", DRUG DISCOVERY TODAY, ELSEVIER, AMSTERDAM, NL, vol. 12, no. 13-14, 19 July 2007 (2007-07-19), pages 521 - 526, XP022164785, ISSN: 1359-6446, DOI: 10.1016/J.DRUDIS.2007.05.008 *

Cited By (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114214361A (en) * 2022-01-07 2022-03-22 中国农业科学院兰州兽医研究所 Construction method and application of URAT1 humanized mouse model
CN114410682A (en) * 2022-02-08 2022-04-29 美康生物科技股份有限公司 Method for transient expression of target protein by 293T cell and application thereof
CN114875068A (en) * 2022-04-27 2022-08-09 安徽省立医院(中国科学技术大学附属第一医院) Novel neuron labeling technology
RU2815047C1 (en) * 2023-07-25 2024-03-11 Федеральное государственное бюджетное образовательное учреждение высшего образования "Рязанский государственный медицинский университет имени академика И.П. Павлова" Министерства здравоохранения Российской Федерации Method of testing medicinal substances for belonging to substrates of polypeptide transporting organic anions 1b1

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