WO2016139677A1 - Improved process for the preparation of 2-({6-[(3r)-3-aminopiperidin-1-yl]-3-methyl-2,4-dioxo-3,4-dihvdropvrimidin-1(2h)-yl}methyl)benzonitrile and pharmaceutically acceptable salts thereof - Google Patents

Improved process for the preparation of 2-({6-[(3r)-3-aminopiperidin-1-yl]-3-methyl-2,4-dioxo-3,4-dihvdropvrimidin-1(2h)-yl}methyl)benzonitrile and pharmaceutically acceptable salts thereof Download PDF

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WO2016139677A1
WO2016139677A1 PCT/IN2016/000057 IN2016000057W WO2016139677A1 WO 2016139677 A1 WO2016139677 A1 WO 2016139677A1 IN 2016000057 W IN2016000057 W IN 2016000057W WO 2016139677 A1 WO2016139677 A1 WO 2016139677A1
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methyl
formula
compound
dioxo
benzonitrile
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PCT/IN2016/000057
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French (fr)
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Srinivasan Thirumalai Rajan
Sajja Eswaraiah
Ghojala Venkat Reddy
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Msn Laboratories Private Limited
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/04Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring-member bond

Definitions

  • the present invention provides an improved process for the preparation of 2-( ⁇ 6- [(3R)-3 -aminopiperidin- 1 -yl]-3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl ⁇ methyl) benzonitrile represented by the following structural formula- 1 and pharmaceutically acceptable salts thereof.
  • Alogliptin benzoate is a dipeptidyl peptidase-4 (DPP-4) inhibitor indicated as an adjunct to diet and exercise to improve glycemic control in adults with type 2 diabetes mellitus.
  • DPP-4 dipeptidyl peptidase-4
  • Alogliptin benzoate (being marketed under the trade name Nesina in the US and Vipidia in Europe) is an orally administered anti-diabetic drug in the DPP-4 inhibitor class.
  • US7807689B2 (hereinafter referred as US'689 patent) first discloses Alogliptin, its pharmaceutically acceptable salts and processes for their preparation. The disclosed process is schematically represented as follows.
  • the present inventors has overcome all the above said disadvantages by developing an improved process for the preparation of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4- dioxo-3,4-dihydropyrimidin-l(2H)-yl ⁇ methyl)benzonitrile and its pharmaceutically acceptable salts by adopting cost effective reagent for methylation such as dimethyl sulfate, mild and safer reagents for various synthetic conversions and were able to produce the final product in higher yields and better quality.
  • cost effective reagent for methylation such as dimethyl sulfate
  • mild and safer reagents for various synthetic conversions and were able to produce the final product in higher yields and better quality.
  • the first aspect of the present invention is to provide an improved process for the preparation of 2-( ⁇ 6-[(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula- la.
  • the second aspect of the present invention is to provide a process for the preparation of 2-((6-chloro-3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl)methyl)benzonitrile compound of formula-5.
  • the third aspect of the present invention is to provide a process for the preparation of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4 ⁇ dioxo-3 ,4-dihydropyrimidin- 1 (2H)- yl ⁇ methyl)benzonitrile hydrochloride compound of formula- 1 b.
  • the fourth aspect of the present invention is to provide a process for: the purification of 2-( ⁇ 6- [(3 R)-3 -aminopiperidin- 1 -yl]-3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of f rmula-lb.
  • the fifth aspect of the present invention is to provide a process for the preparation of crystalline form-A of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl ⁇ methyl)benzohitrile benzoate compound of formula- la.
  • the sixth aspect of the present invention is to provide an alternative process for the preparation of crystalline form-A of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo- 3 ,4-dihydropyrimidin- l(2H)-yl ⁇ memyl)benzonitrile benzoate compound of formula- la.
  • Figure-1 Illustrates the X-Ray powder diffraction (XRPD) pattern of crystalline form-A of 2-( ⁇ 6-[(3R)-3-aminopiperidin- 1 -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidiri- 1 (2H)-yl ⁇ methyl)benzonitrile benzoate (Formula- la).
  • XRPD X-Ray powder diffraction
  • Figure-2 Illustrates the X-Ray powder diffraction pattern (XRPD) of crystalline 2-( ⁇ 6- [(3 R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl ⁇ methyl) benzonitrile hydrochloride salt (Formula- lb) obtained according to the process disclosed in US8222411B2. Detailed Description of the Invention:
  • suitable solvent used in the present invention can be selected from but not limited to "hydrocarbon solvents” such as n-pentane, n-hexane, n-heptane, cyclohexane, petroleum ether (pet ether), benzene, toluene, xylene and the like; "ether solvents” such as dimethyl ether, diethyl ether, diisopropyl ether; dibutyl ether, methyl tert-butyl ether, 2- methoxy ethanol, 1 ,2-dimethoxy ethane, tetrahydrofuran, 2-methyl tetrahydrofuran, dioxane and the like; "ester solvents” such as methyl acetate, ethyl acetate, n-propyl acetate, isopropyl acetate, n-butyl acetate, iso-butyl acetate, tert-butyl acetate
  • the “suitable base” used in the present invention can be selected from but not limited to inorganic bases, organic bases, organosilicon bases, organolithium bases and the like.
  • “Inorganic bases” include but not limited to '' alkali metal carbonates” such as sodium carbonate, potassium carbonate, lithium carbonate, cesium carbonate and the like; “alkali metal bicarbonates” such as sodium bicarbonate, potassium bicarbonate, lithium bicarbonate, cesium bicarbonate and the like; “alkali metal hydroxides” such as sodium hydroxide, potassium hydroxide, lithium hydroxide and the like; “alkali metal alkoxides” such as sodium methoxide, sodium ethoxide, potassium methoxide, potassium ethoxide, sodium tert.butoxide, potassium tert.butoxide, lithium tert.butoxide and the like; “alkali metal hydrides” such as sodium hydride, potassium hydride, lithium hydride and the like; “alkali metal
  • the first aspect of the present invention provides an improved process for the preparation of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula- la, comprising of; a) Reacting the 6-chloropyrimidine-2,4(lH,3H)-dione compound of formula ⁇ -2
  • the suitable base is selected from organic bases, inorganic bases, organolithium bases, organosilicon bases or their mixtures;
  • the suitable methylating agent is selected from dimethyl sulfate, dimethyl carbonate, trimethyloxonium tetrafluoroborate (Me 3 O.BF 4 ), trimethylphosphate, methyl alkyl/aryl sulfonates such as methyl methane sulfonate (MeOMs), methyl ethanesulfonate, methyl benzenesulfonate, methyl toluene sulfonate (MeOTs), methyl trifluoromethanesulfonate (MeOTf), tetramethylammonium salts such as tetramethylammonium halides, trimethylsilyldiazomethane (TMSD) and the like;
  • MeOMs methyl methane sulfonate
  • MeOTs methyl ethanesulfonate
  • MeOTs methyl trifluoromethanesulfonate
  • TMSD trimethylsilyldiazome
  • step-d) purification of compound of formula- 1 involves various techniques that are known to a person skilled in the field of organic chemistry. Such techniques include but not limited to recrystallization from a suitable solvent, solvent-anti solvent technique, salt formation technique, slurrying in a suitable solvent.
  • compound of formula- 1 of the present invention is purified by salt formation technique which involves the treatment of compound of formula- 1 with a suitable acid in a suitable solvent followed by neutralizing the obtained acid-addition salt with a suitable base in a suitable solvent to provide pure compound of formula- 1.
  • the suitable acid is selected from inorganic or organic acids.
  • the "inorganic acid” is selected from but not limited to hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid, nitric acid and the like.
  • the “organic acid” is selected from but not limited to formic acid, acetic acid, propionic acid, trifluoroacetic acid, palmitic acid, stearic acid, maleic acid, fumaric acid, oxalic acid, succinic acid, malic acid, tartaric acid, citric acid, aspartic acid, ascorbic acid, pyruvic acid, salicylic acid, phthalic acid, glycolic acid, lactic acid, malonic acid, cinnamic acid, mandelic acid; methanesulfonic acid, ethanesulfonic acid, 1 ,2-ethanedisulfonic acid, benzenesulfonic acid, p-toluenesulfonic acid, trifluoromethane
  • the suitable solvent is selected from hydrocarbon jsolvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures.
  • the 6-chloropyrimidine-2,4(lH,3H)-dione compound of formula-2, 2-(bromomethyl)benzonitrile compound of formula-3 and (R)-piperidin-3 -amine free base or its acid-addition salt utilized in the present invention can be prepared by ariy of the known processes or they can be procured from commercial sources.
  • a preferred embodiment of the present invention provides an improved process for the preparation of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dipxo-3,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate; compound of formula- la, qomprising of; a) Reacting the 6-chloropyrimidine-2,4(lH,3H)-dione compound of formula-2 with 2-(bromomethyl)benzonitrile compound of formula-3 in presence of triethylamine in toluene to provide 2-((6-chloro-2,4-di0xo-3,4-dihydropyrimidin-l(2H)-yl)methyl) benzonitrile compound of formula-4,
  • the process developed by the present inventors is much efficient in terms of all the parameters like cost-effectiveness, safety, quality and consistently provides the required product with desired quality and impurity profile.
  • the second aspect of the present invention provides a process for the preparation of
  • the suitable methylating agent, the suitable base and the suitable solvent are same as defined in step-b) of the first aspect of the present invention.
  • a preferred embodiment of the present invention provides a process for the preparation of 2-((6-chloro-3-methyl-2,4-dipxo-3,4-dihydropyrimidin-l(2H)-yl)methyl) benzonitrile compound of formula-5, comprising of methylating the 2-((6-chloro-2,4-dioxo- 3,4-dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-4 by reacting it with dimethyl sulfate in presence of potassium carbonate in methyl isobutyl ketone to provide compound of formula-5.
  • the amount of dimethyl sulfate employed in the above methylation step is ranging from 1.0 to 4.0 mole ratio per one mole of compound of formula-4. In a more preferred embodiment, the amount of dimethyl sulfate employed is ranging from 2.0 to 3.5 mole ratio per one mole of compound of formula-4.
  • dimethyl sulfate is employed in an amount ranging from 2.5 to 3.0 mole ratio per one mole of compound of formula-4.
  • methylation of compound of formula-4 is carried out at a temperature ranging from 20°C to reflux temperature of the solvent employed.
  • the third aspect of the present invention provides a process for the preparation of 2- ( ⁇ 6- [(3 R)-3 -aminopiperidin- 1 -yl] -3-methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of formula- lb, comprising of treating the 2- ( ⁇ 6-[(3R)-3-aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl ⁇ methyl)benzonitrile compound of formula- 1 with a suitable HC1 source optionally in a suitable solvent to provide its hydrochloride salt compound of formula- lb.
  • the suitable HC1 source is selected from methanol-HCl, ethanol-HCl, isopropyl alcohoI-HCI, ethyl acetate-HCl, diethyl ether-HCl, aq.HCl, dry HC1, HC1 gas, NH 4 C1, acetyl chloride, tri(C 1 -C 6 alkyl)silyl chloride and the like, wherein acetyl chloride and tri(d-C 6 alkyl)silyl chloride are used preferably in combination with alcohol solvents; the suitable solvent is same as defined in step-a) of the first aspect of the present invention.
  • a preferred embodiment of the present invention provides a process for the preparation of 2-( ⁇ 6- [(3R)-3 -aminopiperidin- 1 -yl]-3 -methyl-2,4-dioxo-3 ,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of formula- lb, comprising of treating the 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l(2H)-yl ⁇ methyl)benzonitrile compound of formula- 1 with isopropyl alcohol-HCl to provide its hydrochloride salt compound of formula- lb.
  • the fourth aspect of the present invention provides a process for the purification of 2- ( ⁇ 6-[(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of formula- lb, comprising of recrystallizing the compound of formula- lb from a suitable solvent or mixture of solvents to provide pure compound of formula- lb.
  • the suitable solvent is selected from hydrocarbon solvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures.
  • a preferred embodiment of the present invention provides a process for the purification of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of formula- lb, comprising of recrystallizing the compound of formulia-lb from acetonitrile to provide pure compound of formula- lb.
  • US8222411B2 (herein after referred as US'411 patent) assigned to Takeda pharmaceuticals discloses a process for the preparation of Alogliptin hydrochloride salt in column-41 under experimental methods section.
  • the present inventors has in-toto repeated the process disclosed in the above said US'411 patent in duplicate experiments and ended up with crystalline solid of Alogliptin HC1.
  • the present inventors have analyzed the obtained crystalline solid by PXRD and the PXRD pattern of the same has been provided in figure-2.
  • WO2007035372A2 discloses two solid state forms of 2-( ⁇ 6-[(3R)-3-aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula- la and processes for their preparation. Out of the two forms, one is crystalline form therein designated as form-A and the other one is amorphous form designated as form-I. The said patent also discloses the pharmaceutical composition and method of treatment comprising the said solid state forms.
  • the fifth aspect of the present invention provides a process for the preparation of crystalline form-A of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula- la, comprising of;
  • step-a) & step-c) isolating the compound of formula- la froni a suitable solvent to provide crystalline form-A of compound of formula- la.
  • the suitable solvent is selected from hydrocarbon solvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures.
  • An embodiment of the present invention provides a process for the preparation of crystalline form-A of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dipxo-3,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula-la, comprising of;
  • Another embodiment of the present invention provides a process for; the preparation of crystalline form-A of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula-la, comprising of; a) Treating the 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile compound of formula- 1 with benzoic acid in dichloromethane,
  • Another embodiment of the present invention provides a process for the preparation of crystalline form-A of 2-( ⁇ 6-]!(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula- la, comprising of;
  • reaction mixture d) cooling the reaction mixture to 25-30°C, preferably to 0-5°C,
  • the sixth aspect of the present invention provides an alternative process for the preparation of crystalline form-A of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula-la, comprising of;
  • the 2-( ⁇ 6-[(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- l(2H)-yl ⁇ methyl)benzonitrile compound of formula- 1 utilized as input in the present invention can be prepared by any of the prior known processes or it can be prepared by the process of the present invention which is an i -situ intermediate in the process for the conversion of Alogliptin HC1 salt of formula- lb to Alogliptin benzoate of formula- la.
  • One embodiment of the present invention provides process for the purification of 2-( ⁇ 6- [(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)- yl ⁇ methyl)benzonitrile hydrochloride compound of formula- lb, comprising of;
  • step-b) the reaction mixture can be heated up to reflux temperature of the solvent used and in step-b) the reaction mixture can be cooled up to 0-5°C.
  • the crystalline 2-( ⁇ 6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-diOxo-3,4-dihydro pyrimidin-l(2H)-yl ⁇ methyl)benzonitrile benzoate compound of formula- la obtained by the present invention is useful for the preparation of various pharmaceutical compositions formulated in a manner suitable for the route of administration to be used where at least a portion of compound of formula- la is present in the composition in particular polymorphic form mentioned.
  • Such pharmaceutical compositions may comprise compound of formula- la present in the composition in a range of between 0.005% and 100% (wt/wt), with the balance of the pharmaceutical composition comprising additional substances such as conventional pharmaceutical excipients, diluents, lubricants, binders, wetting agents, disintegrating agents, glidants, sweetening agents, flavoring agents, emulsifying agents, solubilizing agents, pH buffering agents, perfuming agents, surface stabilizing agents, suspending agents and other conventional pharmaceutically inactive agents.
  • additional substances such as conventional pharmaceutical excipients, diluents, lubricants, binders, wetting agents, disintegrating agents, glidants, sweetening agents, flavoring agents, emulsifying agents, solubilizing agents, pH buffering agents, perfuming agents, surface stabilizing agents, suspending agents and other conventional pharmaceutically inactive agents.
  • the PXRD analysis of the crystalline compounds of the present invention was carried out using BRUKER/AXS X-Ray diffractometer using Cu Ka radiation of wavelength 1.5406 A° and at a continuous scan speed of 0.03°/min.
  • Apparatus A liquid chromatograph equipped with variable wavelength UV detector; Column: Zorbax SB-C8, 250x4.6 mm, 5 ⁇ or equivalent; Wavelength: 225 nm; Column temperature: 60°C; Auto sampler temperature: 5°C; Injection volume: 5 pL; Elution: gradient; Diluent: Acetonitrile: water (50:50 v/v); Buffer: Weigh accurately about 7.0 gm of sodium perchlorate monohydrate into 1000 mL of milli-Q-water and adjust its pH to 2.0 with dil.perchloric acid and filter this solution through 0.22 ⁇ Nylon membrane filter paper.
  • Apparatus A liquid chromatograph equipped with variable wavelength UV detector; Column: CHIRAL PA IC-3, 250x4.6 mm, 3: ⁇ or equivalent; Wavelength: 270 nm; Column temperature: 25°C; Auto sampler temperature: 5°C; Injection volume: 10 ⁇ ;
  • the 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l (2H)-yl ⁇ methyl)benzonitrile benzoate produced by the present invention can be further micronized or milled to get the desired particle size to achieve desired solubility profile based on different forms of pharmaceutical composition requirements.
  • Techniques that may be used for particle size reduction include, but not limited to ball, roller and hammer mills, and jet mills. Milling or micronization may be performed before drying, or after the completion of drying of the product.
  • the present invention is schematically represented as follows.
  • Triethylamine (82.3 gm) was added to a mixture of 6-chloropyrimidine-2,4(l H,3H)- dione compound of formula-2 (100 gm) and toluene (750 ml) at 25-30°C and stirred the reaction mixture for 40 min at the same temperature.
  • a solution of 2-(bromomethyl)benzonitrile compound of formula-3 (133.8 gm) in toluene (750 ml) was slowly added to the reaction mixture at 25-30°C. Heated the reaction mixture to 105- 1 10°C and stirred for 2 hrs at the same temperature. Reduced the temperature of the reaction mixture to 70-75°C and water was added to it.
  • Example-2 Preparation of 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l(2H)-yl)methyl)benzonitrile (Formula-5)
  • Example-4 Preparation of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl ⁇ methyl)benzonitrile hydrochloride (Formula-lb)
  • Isopropyl alcohol (220 ml) was added to 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3- methyl-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl ⁇ methyl)benzonitrile compound of formula- 1 (70 gm) at 25-30°C and cool the reaction mixture to 10-15°C.
  • Isopropyl alcohol-HCl (220 ml) was slowly added to the reaction mixture at 10-15°C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with isopropyl alcohol. Acetonitrile (275 ml) was added to the obtained solid at 25-30°C.
  • Aqueous sodium carbonate solution (dissolve 12.7 gm of sodium carbonate in 120 ml of water) was added to a mixture of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin-l (2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of formula-lb (30 gm) and dichloromethane (150 ml) at 25-30°C and stirred for 20 rriin at the same temperature. Both the organic and aqueous layers were separated and the aqueous layer was extracted with dichloromethane. Washed the combined organic layer with water and filtered through Whatmann filter paper.
  • Aqueous sodium carbonate solution (dissolve 12.7 gm of sodium carbonate in 120 ml of water) was added to a mixture of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo-
  • the PXRD pattern of the obtained compound is similar to figure- 1.
  • Aqueous sodium carbonate solution (dissolve 12.7 gm of sodium carbonate in 120 ml of water) was added to a mixture of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin- l (2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of formula- l b (30 gm) and dichloromethane (150 ml) at 25-30°C and stirred for 20 min at the same temperature. Both the organic and aqueous layers were separated and the aqueous layer was extracted with dichloromethane. Washed the combined organic layer with water and filtered through Whatmann filter paper.
  • Benzoic acid (9.3 gm) was added to the filtered organic layer at 25-30°C and stirred for 10 min at the same temperature. Distilled off the solvent completely from the reaction mixture and co-distilled with n-propanol. n-Propanol (270 ml) was added to the obtained solid at 25-30°C. Heated the reaction mixture to reflux temperature and stirred for 15 min at the same temperature. Cooled the reaction mixture to 25-30°C. further cooled to 0-5°C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with n-propanol and dried the material to get the title compound as a crystalline solid. The PXRD pattern of the obtained compound is similar to figure- 1.
  • Alcohol impurity Not detected; Chloro impurity: 0.02%; Dimer impurity: 0.03%; 3-aminopiperidine impurity: Not detected; Highest individual unspecified impurity: 0,02%; Particle size distribution: D(0.1) is 1.26 ⁇ ; D(0.5) is 9.33 ⁇ ; D(0.9) is 58.45 ⁇ ⁇ ; D(4,3) is 21.19 ⁇ .
  • Isopropyl alcohol (240 Lt) was added to the filtrate at 25-30°C and cooled the reaction mixture to 10-15°C.
  • Isopropyl alcohol-HCl (240 Lt) was slowly added to the reaction mixture at 10-15°C.
  • 100 gm of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l -yl]-3-methyl- 2 ! 4-dioxo-3,4-dihydropyrimidin-l (2H)-yl ⁇ methyl)benzonitrile hydrochloride seed material was added to the reaction mixture at 10-15°C and stirred the reaction mixture for 2 hrs at the same temperature.
  • Isopropyl alcohol 400 ml was added to the filtrate at 25-30°C and cooled the reaction mixture to 10-15°C.
  • Isopropyl alcohol-HCl 400 ml was slowly added to the reaction mixture at 10-1 °C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with a mixture of isopropyl alcohol and acetonitrile and then dried the material. The obtained solid was added to n-propanol (500 ml) at 25-30°C. Heated the reaction mixture to 75-80°C and stirred for 20 min at the same temperature. Cooled the reaction mixture to 25-30°C and stirred for 15 min at the same temperature. Filtered the solid, washed with n-propanol and then dried the material to provide the title compound.
  • Aqueous sodium carbonate solution (24.5 Kg of sodium carbonate in 232 Lt of water) was added to a mixture of 2-( ⁇ 6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin- l (2H)-yl ⁇ methyl)benzonitrile hydrochloride compound of formula- l b (58 Kg) and dichloromethane (290 Lt) at 25-30°C and stirred the reaction mixture for 20 min at the same temperature. Both the organic and aqueous layers were separated and washed the organic layer with water.
  • Benzoic acid (18.9 Kg) was added to the organic layer at 25-30°C and stirred for 10 min at the same temperature, Distilled off the solvent completely from the reaction mixture and co-distilled with n-propanol. 500 Lt of n-propanol was added to the obtained compound at 25-30°C. Heated the reaction mixture to 95-100°C, stirred for 1 hr at the same temperature and then filtered the reaction mixture. Slowly cooled the filtrate to 25-30°C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with n-propanol and then dried the material to provide the title compound.
  • Alcohol impurity Not detected; Chloro impurity: 0.01%; Dimer impurity: Not detected: 3-amino piperidine content: Not detected; (S)-isomer impurity: Not detected; Highest individual unspecified impurity: 0.01 %.
  • PSD D(0.1) is 5,62 ⁇ ; D(0.5) is 21 .75 ⁇ ; D(0,9) is 48.16 ⁇ .

Abstract

The present invention relates to an improved process for the preparation of 2-({6-[(3R)-3-aminopiperidin-1-yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl} methyl)benzonitrile represented by the following structural formula-1 and pharmaceutically acceptable salts thereof.

Description

Improved process for the preparation of 2-(i6-r(3R)-3-aminopiperidin-l-yll-3- methvI-l^-dioxo ^-dihvdropyrimidin-l lH^-v methvnbenzonitrile and pharmaceutically acceptable salts thereof Related Application:
This application claims the benefit of priority of our Indian patent application 984/CHE/2015 filed on 2nd March 2015 which is incorporated herein by reference.
Field of the Invention:
The present invention provides an improved process for the preparation of 2-({6- [(3R)-3 -aminopiperidin- 1 -yl]-3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl } methyl) benzonitrile represented by the following structural formula- 1 and pharmaceutically acceptable salts thereof.
Figure imgf000002_0001
Formula-1
Background of the Invention:
2-( { 6-[(3 R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)- yl}methyl)benzonitrile monobenzoate, commonly known as Alogliptin benzoate is a dipeptidyl peptidase-4 (DPP-4) inhibitor indicated as an adjunct to diet and exercise to improve glycemic control in adults with type 2 diabetes mellitus. Alogliptin benzoate (being marketed under the trade name Nesina in the US and Vipidia in Europe) is an orally administered anti-diabetic drug in the DPP-4 inhibitor class.
US7807689B2 (hereinafter referred as US'689 patent) first discloses Alogliptin, its pharmaceutically acceptable salts and processes for their preparation. The disclosed process is schematically represented as follows.
Figure imgf000003_0001
The disclosed process has several disadvantages to adopt it on commercial scale, few of which are discussed below.
• The above disclosed process involves the usage of pyrophoric bases such as alkali metal hydrides in almost all the stages of the synthetic process.
• The said process involves the usage of methyl halides for methylation step which are known to be carcinogens and also highly expensive.
• Produces the required product in low yields and also with lesser purity.
• The disclosed process leads to the formation of lot of byproducts along ith the required compound out of which major one is dimer impurity which is formed in almost 30-35%.
In view of all the above difficulties there is a significant need in the art to develop an improved process for the preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4- dioxo-3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile and its pharmaceutically acceptable salts which arrests/controls the formation of all the byproducts including dimer impurity in minimal/acceptable levels.
The present inventors has overcome all the above said disadvantages by developing an improved process for the preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4- dioxo-3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile and its pharmaceutically acceptable salts by adopting cost effective reagent for methylation such as dimethyl sulfate, mild and safer reagents for various synthetic conversions and were able to produce the final product in higher yields and better quality. Brief description of the invention:
The first aspect of the present invention; is to provide an improved process for the preparation of 2-( { 6-[(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- la.
The second aspect of the present invention is to provide a process for the preparation of 2-((6-chloro-3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl)methyl)benzonitrile compound of formula-5.
The third aspect of the present invention is to provide a process for the preparation of 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4÷dioxo-3 ,4-dihydropyrimidin- 1 (2H)- yl } methyl)benzonitrile hydrochloride compound of formula- 1 b.
The fourth aspect of the present invention is to provide a process for: the purification of 2-( { 6- [(3 R)-3 -aminopiperidin- 1 -yl]-3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl } methyl)benzonitrile hydrochloride compound of f rmula-lb.
The fifth aspect of the present invention is to provide a process for the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzohitrile benzoate compound of formula- la.
The sixth aspect of the present invention is to provide an alternative process for the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo- 3 ,4-dihydropyrimidin- l(2H)-yl}memyl)benzonitrile benzoate compound of formula- la.
Brief Description of the Drawings:
Figure-1: Illustrates the X-Ray powder diffraction (XRPD) pattern of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin- 1 -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidiri- 1 (2H)-yl} methyl)benzonitrile benzoate (Formula- la).
Figure-2: Illustrates the X-Ray powder diffraction pattern (XRPD) of crystalline 2-({6- [(3 R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl } methyl) benzonitrile hydrochloride salt (Formula- lb) obtained according to the process disclosed in US8222411B2. Detailed Description of the Invention:
The "suitable solvent" used in the present invention can be selected from but not limited to "hydrocarbon solvents" such as n-pentane, n-hexane, n-heptane, cyclohexane, petroleum ether (pet ether), benzene, toluene, xylene and the like; "ether solvents" such as dimethyl ether, diethyl ether, diisopropyl ether; dibutyl ether, methyl tert-butyl ether, 2- methoxy ethanol, 1 ,2-dimethoxy ethane, tetrahydrofuran, 2-methyl tetrahydrofuran, dioxane and the like; "ester solvents" such as methyl acetate, ethyl acetate, n-propyl acetate, isopropyl acetate, n-butyl acetate, iso-butyl acetate, tert-butyl acetate and the like; "polar-aprotic solvents such as dimethylacetamide, Ν,Ν-dimethylformamide, dimethylsulfoxide, N- methylpyrrolidone (NMP) and the like; "chloro solvents" such as dichloromethane, dichloroethane, chloroform, carbon tetrachloride and the like; "ketone solvents" such as acetone, dimethyl ketone, diethyl ketone, methyl ethyl ketone, methyl isobutyl ketone and the like; "nitrile solvents" such as acetonitrile, propionitrile, isobutyronitrile and the like; "alcohol solvents" such as methanol, ethanol, n-propanol, iso-propanol, n-butanol, iso- butanol, t-butanol, ethane- 1,2-diol, propane- 1,2-diol and the like; "polar solvents" such as water; formic acid, acetic acid, pyridine or their mixtures.
The "suitable base" used in the present invention can be selected from but not limited to inorganic bases, organic bases, organosilicon bases, organolithium bases and the like. "Inorganic bases" include but not limited to '' alkali metal carbonates" such as sodium carbonate, potassium carbonate, lithium carbonate, cesium carbonate and the like; "alkali metal bicarbonates" such as sodium bicarbonate, potassium bicarbonate, lithium bicarbonate, cesium bicarbonate and the like; "alkali metal hydroxides" such as sodium hydroxide, potassium hydroxide, lithium hydroxide and the like; "alkali metal alkoxides" such as sodium methoxide, sodium ethoxide, potassium methoxide, potassium ethoxide, sodium tert.butoxide, potassium tert.butoxide, lithium tert.butoxide and the like; "alkali metal hydrides" such as sodium hydride, potassium hydride, lithium hydride and the like; "alkali metal amides" such as sodium amide, potassium amide, lithium amide and the like; ammonia, alkali metal and alkali earth metal salts of acetic acid such as sodium acetate, potassium acetate, magnesium acetate, calcium acetate and the like; "organic bases" like dimethylamine, diethylamine, diisopropyl amine, di-n-propylamine, diisoprooylethylamine, diisobutylamine, triethylamine, triethanolamine, tributylamine, tert.butylamine, pyridine, 4- dimethylaminopyridine (DMAP), l,8-diazabicyclo[5.4.0]undec-7-ene (DBU), 1,5- diazabicyclo[4.3.0]non-5-ene (DBN) , N-methyl morpholine (NMM), 1,4- diazabicyclo[2.2.2]octane (DABCO), 2,6-lutidine, imidazole, lithium diisopropylamide (LDA) and the like; organolithium bases such as methyl lithium, n-butyl lithium and the like; organosilicon bases such as lithium hexamethyldisilazide (LiHMDS), sodium hexamethyldisilazide (NaHMDS), potassium hexamethyldisilazide (KHMDS) or their mixtures.
The first aspect of the present invention provides an improved process for the preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- la, comprising of; a) Reacting the 6-chloropyrimidine-2,4(lH,3H)-dione compound of formula÷-2
Figure imgf000006_0001
Formula-2
with 2-(bromomethyl)benzonitrile c formula-3
Figure imgf000006_0002
Formula-3
in presence of a suitable base in a suitable solvent to provide 2-((6-chloro-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-4,
Figure imgf000006_0003
Formula-4 b) methylation of compound of formula-4 with a suitable methylating agent in a suitable solvent in presence of a suitable base to provide 2-((6-chloro-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl)methy f formula-5,
Figure imgf000007_0001
c) reacting the compound of formula-5 with (R)-piperidin-3 -amine free base or its acid- addition salt in presence of a suitable base in a suitable solvent to provide 2-({6-[(3R)-3- aminopiperidin-l-yl] -3 -methyl-2,4-dioxo-3,4-;dihydropyrimidin-l(2H)-yl} methyl) benzonitrile compound of formula-
Figure imgf000007_0002
d) optionally purifying the comp ,
e) treating the compound of formula- 1 obtained in step-c) or step-d) with benzoic acid in a suitable solvent to provide its benzoate salt compound of formula- la,
Figure imgf000007_0003
Formula- la
f) isolating the benzoate salt compound of formula- 1 a from a suitable solvent;
with the proviso that the methylating agent used in step-b) is not methyl halide or methanol/PPhi/azodicarboxylate system (Mitsunobu reaction). Wherein, in step-a) to step-c) the suitable base is selected from organic bases, inorganic bases, organolithium bases, organosilicon bases or their mixtures;
In step-b) the suitable methylating agent is selected from dimethyl sulfate, dimethyl carbonate, trimethyloxonium tetrafluoroborate (Me3O.BF4), trimethylphosphate, methyl alkyl/aryl sulfonates such as methyl methane sulfonate (MeOMs), methyl ethanesulfonate, methyl benzenesulfonate, methyl toluene sulfonate (MeOTs), methyl trifluoromethanesulfonate (MeOTf), tetramethylammonium salts such as tetramethylammonium halides, trimethylsilyldiazomethane (TMSD) and the like;
In step-d) purification of compound of formula- 1 involves various techniques that are known to a person skilled in the field of organic chemistry. Such techniques include but not limited to recrystallization from a suitable solvent, solvent-anti solvent technique, salt formation technique, slurrying in a suitable solvent. Preferably compound of formula- 1 of the present invention is purified by salt formation technique which involves the treatment of compound of formula- 1 with a suitable acid in a suitable solvent followed by neutralizing the obtained acid-addition salt with a suitable base in a suitable solvent to provide pure compound of formula- 1.
Wherein, the suitable acid is selected from inorganic or organic acids. The "inorganic acid" is selected from but not limited to hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid, nitric acid and the like. The "organic acid" is selected from but not limited to formic acid, acetic acid, propionic acid, trifluoroacetic acid, palmitic acid, stearic acid, maleic acid, fumaric acid, oxalic acid, succinic acid, malic acid, tartaric acid, citric acid, aspartic acid, ascorbic acid, pyruvic acid, salicylic acid, phthalic acid, glycolic acid, lactic acid, malonic acid, cinnamic acid, mandelic acid; methanesulfonic acid, ethanesulfonic acid, 1 ,2-ethanedisulfonic acid, benzenesulfonic acid, p-toluenesulfonic acid, trifluoromethanesulfonic acid, naphthalenesulfonic acid, camphorsulfonic acid, glutamic acid, muconic acid and the like. The suitable base is selected from inorganic bases or organic bases;
In step-a) to step-f) the suitable solvent is selected from hydrocarbon jsolvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures. The 6-chloropyrimidine-2,4(lH,3H)-dione compound of formula-2, 2-(bromomethyl)benzonitrile compound of formula-3 and (R)-piperidin-3 -amine free base or its acid-addition salt utilized in the present invention can be prepared by ariy of the known processes or they can be procured from commercial sources.
A preferred embodiment of the present invention provides an improved process for the preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dipxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile benzoate; compound of formula- la, qomprising of; a) Reacting the 6-chloropyrimidine-2,4(lH,3H)-dione compound of formula-2 with 2-(bromomethyl)benzonitrile compound of formula-3 in presence of triethylamine in toluene to provide 2-((6-chloro-2,4-di0xo-3,4-dihydropyrimidin-l(2H)-yl)methyl) benzonitrile compound of formula-4,
b) methylation of compound of formula-4 with dimethyl sulfate in presence of potassium carbonate in methyl isobutyl ketone to provide 2-((6-chloro-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-5,
c) reacting the compound of formula-5 with (R)-piperidin-3 -amine dihydrochloride in presence of potassium carbonate in acetonitrile to provide 2-({6-[(3R)-3-aminopiperidin- l-yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula- 1,
d) treating the compound of formula- 1 with isopropyl alcohol-HCl in isopfopyl alcohol to provide 2-({6-[(3R)-3-aminopiperidin- 1 -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l(2H)-yl}methyl)benzonitrile d of formula- lb
Figure imgf000009_0001
Formula- lb
followed by neutralizing the obtained HC1 salt with aqueous sodium carbonate solution in dichloromethane to provide pure compound of formula- 1, e) treating the compound of formula- 1 with benzoic acid in dichloromethane to provide its benzoate salt compound of formula- la,
f) isolating the compound of formula- la by rejcrystallizing it from n-propanol to provide pure compound of fomula-la.
By developing the above described improved process for the preparation of 2-({6- [(3R)-3-aminopiperidin- 1 -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- 1 (2H)-yl} methyl) benzonitrile benzoate compound of formula- la, the present inventors were able to get the final API in excellent yield and quality with all the impurities and residual solvents controlled well within the limits as defined by ICH and some of the impurities in non-detectable level.
The process developed by the present inventors is much efficient in terms of all the parameters like cost-effectiveness, safety, quality and consistently provides the required product with desired quality and impurity profile. The second aspect of the present invention provides a process for the preparation of
2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl)methyl)benz|onitrile compound of formula-5, comprising of methylating the 2-((6-chloro-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-4 by reacting it with a suitable methylating agent in presence of a suitable base in a suitable solvent to provide compound of formula-5.
Wherein, the suitable methylating agent, the suitable base and the suitable solvent are same as defined in step-b) of the first aspect of the present invention.
A preferred embodiment of the present invention provides a process for the preparation of 2-((6-chloro-3-methyl-2,4-dipxo-3,4-dihydropyrimidin-l(2H)-yl)methyl) benzonitrile compound of formula-5, comprising of methylating the 2-((6-chloro-2,4-dioxo- 3,4-dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-4 by reacting it with dimethyl sulfate in presence of potassium carbonate in methyl isobutyl ketone to provide compound of formula-5.
In an embodiment, the amount of dimethyl sulfate employed in the above methylation step is ranging from 1.0 to 4.0 mole ratio per one mole of compound of formula-4. In a more preferred embodiment, the amount of dimethyl sulfate employed is ranging from 2.0 to 3.5 mole ratio per one mole of compound of formula-4.
In a most preferable embodiment, dimethyl sulfate is employed in an amount ranging from 2.5 to 3.0 mole ratio per one mole of compound of formula-4.
In the above process, methylation of compound of formula-4 is carried out at a temperature ranging from 20°C to reflux temperature of the solvent employed.
The third aspect of the present invention provides a process for the preparation of 2- ( { 6- [(3 R)-3 -aminopiperidin- 1 -yl] -3-methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl } methyl)benzonitrile hydrochloride compound of formula- lb, comprising of treating the 2- ({6-[(3R)-3-aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl} methyl)benzonitrile compound of formula- 1 with a suitable HC1 source optionally in a suitable solvent to provide its hydrochloride salt compound of formula- lb.
Wherein, the suitable HC1 source is selected from methanol-HCl, ethanol-HCl, isopropyl alcohoI-HCI, ethyl acetate-HCl, diethyl ether-HCl, aq.HCl, dry HC1, HC1 gas, NH4C1, acetyl chloride, tri(C1-C6 alkyl)silyl chloride and the like, wherein acetyl chloride and tri(d-C6 alkyl)silyl chloride are used preferably in combination with alcohol solvents; the suitable solvent is same as defined in step-a) of the first aspect of the present invention. A preferred embodiment of the present invention provides a process for the preparation of 2-( { 6- [(3R)-3 -aminopiperidin- 1 -yl]-3 -methyl-2,4-dioxo-3 ,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile hydrochloride compound of formula- lb, comprising of treating the 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l(2H)-yl}methyl)benzonitrile compound of formula- 1 with isopropyl alcohol-HCl to provide its hydrochloride salt compound of formula- lb.
The fourth aspect of the present invention provides a process for the purification of 2- ( { 6-[(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl } methyl)benzonitrile hydrochloride compound of formula- lb, comprising of recrystallizing the compound of formula- lb from a suitable solvent or mixture of solvents to provide pure compound of formula- lb. Wherein, the suitable solvent is selected from hydrocarbon solvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures. A preferred embodiment of the present invention provides a process for the purification of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile hydrochloride compound of formula- lb, comprising of recrystallizing the compound of formulia-lb from acetonitrile to provide pure compound of formula- lb.
US8222411B2 (herein after referred as US'411 patent) assigned to Takeda pharmaceuticals discloses a process for the preparation of Alogliptin hydrochloride salt in column-41 under experimental methods section. The present inventors has in-toto repeated the process disclosed in the above said US'411 patent in duplicate experiments and ended up with crystalline solid of Alogliptin HC1. The present inventors have analyzed the obtained crystalline solid by PXRD and the PXRD pattern of the same has been provided in figure-2.
WO2007035372A2 discloses two solid state forms of 2-({6-[(3R)-3-aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl } methyl)benzonitrile benzoate compound of formula- la and processes for their preparation. Out of the two forms, one is crystalline form therein designated as form-A and the other one is amorphous form designated as form-I. The said patent also discloses the pharmaceutical composition and method of treatment comprising the said solid state forms.
The fifth aspect of the present invention provides a process for the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- la, comprising of;
a) Treating 2-( { 6-[(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- l(2H)-yl}methyl)benzonitrile compound of formula- 1 with benzoic acid in a suitable solvent, b) removing the solvent from the reaction mixture,
c) isolating the compound of formula- la froni a suitable solvent to provide crystalline form-A of compound of formula- la. Wherein, in step-a) & step-c) the suitable solvent is selected from hydrocarbon solvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures.
An embodiment of the present invention provides a process for the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dipxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula-la, comprising of;
i
a) Treating the 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-di6xo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula- 1 with benzoic acid in dichloromethane,
b) distilling off dichloromethane from the reaction mixture,
c) slurrying the obtained solid in methyl tert-butyl ether,
d) filtering the solid and drying to provide crystalline form-A of compound Of formula- la.
Another embodiment of the present invention provides a process for; the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula-la, comprising of; a) Treating the 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula- 1 with benzoic acid in dichloromethane,
b) distilling off dichloromethane from the reaction mixture to obtain a solid,
c) slurrying the obtained solid in cyclohexane,
d) filtering the solid and drying to provide crystalline form-A of compound of formula- la. Another embodiment of the present invention provides a process for the preparation of crystalline form-A of 2-({6-]!(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- la, comprising of;
a) Treating the 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula- 1 with benzoic acid in dichloromethane,
b) distilling off dichloromethane from the reaction mixture to obtain a solid,
c) dissolving the obtained solid in n-propanol by heating the reaction mixture to reflux temperature,
d) cooling the reaction mixture to 25-30°C, preferably to 0-5°C,
e) filtering the precipitated solid and drying to provide crystalline form-A of compound of formula- la. The sixth aspect of the present invention provides an alternative process for the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula-la, comprising of;
a) Treating the 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula- 1 with benzoic acid in dichloromethane,
b) distilling off the solvent completely from the reaction mixture to provide crystalline form-A of compound of formula- la. The 2-( { 6-[(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- l(2H)-yl}methyl)benzonitrile compound of formula- 1 utilized as input in the present invention can be prepared by any of the prior known processes or it can be prepared by the process of the present invention which is an i -situ intermediate in the process for the conversion of Alogliptin HC1 salt of formula- lb to Alogliptin benzoate of formula- la. One embodiment of the present invention provides process for the purification of 2-( { 6- [(3R)-3 -aminopiperidin- 1 -yl] -3 -methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)- yl}methyl)benzonitrile hydrochloride compound of formula- lb, comprising of;
a) Adding n-propanol to compound of formula- lb,
b) heating the reaction mixture,
c) cooling the reaction mixture,
d) filtering the solid and drying the material to provide pure compound of formula- lb.
Wherein, in step-b) the reaction mixture can be heated up to reflux temperature of the solvent used and in step-b) the reaction mixture can be cooled up to 0-5°C.
The formation of the following impurities has been observed during the synthesis of Alogliptin benzoate by the process of the present invention. All these impurities were identified, characterized and well controlled within the limits as required by ICH guidelines.
Figure imgf000015_0001
Dimer impurity 3-aminopiperidine impurity The crystalline 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-diOxo-3,4-dihydro pyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- la obtained by the present invention is useful for the preparation of various pharmaceutical compositions formulated in a manner suitable for the route of administration to be used where at least a portion of compound of formula- la is present in the composition in particular polymorphic form mentioned. Such pharmaceutical compositions may comprise compound of formula- la present in the composition in a range of between 0.005% and 100% (wt/wt), with the balance of the pharmaceutical composition comprising additional substances such as conventional pharmaceutical excipients, diluents, lubricants, binders, wetting agents, disintegrating agents, glidants, sweetening agents, flavoring agents, emulsifying agents, solubilizing agents, pH buffering agents, perfuming agents, surface stabilizing agents, suspending agents and other conventional pharmaceutically inactive agents.
The PXRD analysis of the crystalline compounds of the present invention was carried out using BRUKER/AXS X-Ray diffractometer using Cu Ka radiation of wavelength 1.5406 A° and at a continuous scan speed of 0.03°/min.
The 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l(2H)-yl}methyl)benzonitrile benzoate compound of formula- la of the present invention was analyzed by HPLC under the following conditions;
Apparatus: A liquid chromatograph equipped with variable wavelength UV detector; Column: Zorbax SB-C8, 250x4.6 mm, 5μπι or equivalent; Wavelength: 225 nm; Column temperature: 60°C; Auto sampler temperature: 5°C; Injection volume: 5 pL; Elution: gradient; Diluent: Acetonitrile: water (50:50 v/v); Buffer: Weigh accurately about 7.0 gm of sodium perchlorate monohydrate into 1000 mL of milli-Q-water and adjust its pH to 2.0 with dil.perchloric acid and filter this solution through 0.22μπι Nylon membrane filter paper. Mobile phase-A: Buffer (100%); Mobile phase-B: Acetonitrile: Buffer (70:30 v/v). The enantiomeric purity of 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- l a of the present invention was analyzed by HPLC under the following conditions;
Apparatus: A liquid chromatograph equipped with variable wavelength UV detector; Column: CHIRAL PA IC-3, 250x4.6 mm, 3: μπι or equivalent; Wavelength: 270 nm; Column temperature: 25°C; Auto sampler temperature: 5°C; Injection volume: 10 μί;
i
Elution: Isocratic; Diluent: Methanol; Mobile phase: Ethanol:Dichloromethane:Ethanolamine (800:200:2 v/v/v); S-isomer stock solution preparation: Weigh accurately about 8 mg of S- isomer into a 10 mL volumetric flask, add about '5-7 mL of diluent and sonicate to dissolve. Make up to the mark with diluent and mix well.
The 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l (2H)-yl}methyl)benzonitrile benzoate produced by the present invention; can be further micronized or milled to get the desired particle size to achieve desired solubility profile based on different forms of pharmaceutical composition requirements. Techniques that may be used for particle size reduction include, but not limited to ball, roller and hammer mills, and jet mills. Milling or micronization may be performed before drying, or after the completion of drying of the product.
The present invention is schematically represented as follows.
Synthetic scheme:
Figure imgf000018_0001
Alogliptin benzoate
Formula-la
The best mode of carrying out the present invention is illustrated by the below mentioned examples. These examples are provided as illustration only and hence should not be construed as limitation to the scope of the invention. Examples:
Example-1 : Preparation of 2-((6-chloro-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl) methyl)benzonitrile (Fortnula-4)
Triethylamine (82.3 gm) was added to a mixture of 6-chloropyrimidine-2,4(l H,3H)- dione compound of formula-2 (100 gm) and toluene (750 ml) at 25-30°C and stirred the reaction mixture for 40 min at the same temperature. A solution of 2-(bromomethyl)benzonitrile compound of formula-3 (133.8 gm) in toluene (750 ml) was slowly added to the reaction mixture at 25-30°C. Heated the reaction mixture to 105- 1 10°C and stirred for 2 hrs at the same temperature. Reduced the temperature of the reaction mixture to 70-75°C and water was added to it. Cooled the reaction mixture to 25-30°C and stirred for 45 min at the same temperature. Filtered the precipitated solid, washed with water followed by with toluene and suck dried the material. N,N-dimethylformamide (50 ml) and toluene (400 ml) were added to the obtained solid at 25-30°C. Heated the reaction mixture to 95- 100°C and stirred for 45 min at the same temperature. Cooled the reaction mixture to 0- 5°C and stirred for 45 min at the same temperature. Filtered the precipitated solid, washed with toluene and dried the material to get the title compound.
Yield: 124.0 gm; M.R: 240-245°C.
Example-2: Preparation of 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l(2H)-yl)methyl)benzonitrile (Formula-5)
Dimethyl sulfate (68 gm) and potassium carbonate (67 gm) were added to a mixture of 2-((6-chloro-2,4-dioxo-3,4-dihydropyrimidin-l (2H)-yl)methyl)benzonitrile compound of formula-4 (50 gm) and methyl isobutyl ketone (250 ml) at 25-30°C. Heated the reaction mixture to 55-60°C and stirred for 28 hrs at the same temperature. Distilled off the solvent completely from the reaction mixture. Dichloromethane and water were added to the obtained solid at 25-30°C and stirred for 15 min at the same temperature. Both the organic and aqueous layers were separated and distilled off the solvent completely from the organic layer under atmospheric pressure and co-distilled with cyclohexane. 150 ml; of cyclohexane was added to the obtained solid at 25-30°C and stirred for 45 min at the same temperature. Filtered the solid, washed with cyclohexane and dried the material to get the title compound. Yield: 45.0 gm; M.R: 150-164°C.
Example-3: Preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile (Formula-1)
Potassium carbonate (1 10 gm) and 2-((6-chloro-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-5 (55 gm) were added to a mixture of (R)-piperidin-3-amine dihydrochloride (38 gm) and acetonitrile (275 ml) at 25-30°C. Heated the reaction mixture to 70-75°C and stirred for 10 hrs at the same temperature. Reduced the temperature of the reaction mixture to 40-45°C and potassium carbonate (33 gm) was added. Heated the reaction mixture to 70-75°C and stirred for 10 hrs at the same temperature. Cooled the reaction mixture to 25-30°C and filtered. Distilled off the solvent from the filtrate under reduced pressure to get the title compound.
Yield: 70.0 gm.
Example-4: Preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile hydrochloride (Formula-lb)
Isopropyl alcohol (220 ml) was added to 2-({6-[(3R)-3-aminopiperidin-l-yl]-3- methyl-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula- 1 (70 gm) at 25-30°C and cool the reaction mixture to 10-15°C. Isopropyl alcohol-HCl (220 ml) was slowly added to the reaction mixture at 10-15°C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with isopropyl alcohol. Acetonitrile (275 ml) was added to the obtained solid at 25-30°C. Heated the reaction mixture to 60-65°C and stirred for 1 hr at the same temperature. Cooled the reaction mixture to 25-30°C and stirred for 2 hrs at the same temperature. Filtered the solid, washed with acetonitrile and dried the material to get the title compound. The PXRD of the obtained compound is similar to fig-2. Yield: 53.0 gm. Example-5: Preparation of 2-({6-[(3R)-3-aininopiperidin-l-ylJ-3-methyI-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yI}methyl)benzonitrile benzoate (Formula-la)
Aqueous sodium carbonate solution (dissolve 12.7 gm of sodium carbonate in 120 ml of water) was added to a mixture of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin-l (2H)-yl}methyl)benzonitrile hydrochloride compound of formula-lb (30 gm) and dichloromethane (150 ml) at 25-30°C and stirred for 20 rriin at the same temperature. Both the organic and aqueous layers were separated and the aqueous layer was extracted with dichloromethane. Washed the combined organic layer with water and filtered through Whatmann filter paper. Benzoic acid (9.3 gm) was added to the filtered organic layer at 25-30°C and stirred for 10 min at the same temperature. Distilled off the solvent completely from the reaction mixture provided the title compound as a crystalline solid. The PXRD pattern of the obtained compound is similar to figure- 1.
Yield: 33.0 gm. Example-6: Preparation of 2-({6-[(3R)-3-aminopiperidin-l-yI]-3-methyl-2,4-dioxo-3,4- dihydropyrirnidin-l(2H)-yl} methyl)benzonitrile benzoate (Formula-1 a)
Aqueous sodium carbonate solution (dissolve 12.7 gm of sodium carbonate in 120 ml of water) was added to a mixture of 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo-
3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile hydrochloride compound of formula- lb j ;
(30 gm) and dichloromethane (150 ml) at 25-30°C and stirred for 20 min at the same temperature. Both the organic and aqueous layers were separated and the aqueous layer was extracted with dichloromethane. Washed the combined organic layer with water and filtered
I
through Whatmann filter paper. Benzoic acid (9.3 gm) was added to the filtered organic layer at 25-30°C and stirred for 10 min at the same temperature. Distilled off the solvent completely from the reaction mixture and co-distilled with methyl tert-butyl ether under reduced pressure. Methyl tert-butyl ether (150 ml) was added to the obtained compound at 25-30°C and stirred the reaction mixture for 2 hrs at the same temperature. Filtered the solid, washed with methyl tert-butyl ether and dried the material to get the title compound.
The PXRD pattern of the obtained compound is similar to figure- 1.
Yield: 32.0 gm; Purity by HPLC: 99.9%.
PSD: D(0.1) is 0.72 μπι; D(0.5) is 8.34 μπι; D(0.9) is 34.23 μπι; D(4,3) is 13.46 μιη. Example-7: Preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate (Formula-la)
Aqueous sodium carbonate solution (dissolve 12.7 gm of sodium carbonate in 120 ml of water) was added to a mixture of 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin- l (2H)-yl}methyl)benzonitrile hydrochloride compound of formula- l b (30 gm) and dichloromethane (150 ml) at 25-30°C and stirred for 20 min at the same temperature. Both the organic and aqueous layers were separated and the aqueous layer was extracted with dichloromethane. Washed the combined organic layer with water and filtered through Whatmann filter paper. Benzoic acid (9.3 gm) was added to the filtered organic layer at 25-30°C and stirred for 10 min at the same temperature. Distilled off the solvent completely from the reaction mixture and co-distilled with n-propanol. n-Propanol (270 ml) was added to the obtained solid at 25-30°C. Heated the reaction mixture to reflux temperature and stirred for 15 min at the same temperature. Cooled the reaction mixture to 25-30°C. further cooled to 0-5°C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with n-propanol and dried the material to get the title compound as a crystalline solid. The PXRD pattern of the obtained compound is similar to figure- 1.
Yield: 31.0 gm; M.R: 178-183°C; Water content: 0.24% w/w.
Purity by HPLC: 99.92%; Enantiomeric purity by chiral HPLC: 99.99%.
Alcohol impurity: Not detected; Chloro impurity: 0.02%; Dimer impurity: 0.03%; 3-aminopiperidine impurity: Not detected; Highest individual unspecified impurity: 0,02%; Particle size distribution: D(0.1) is 1.26 μιη; D(0.5) is 9.33 μηι; D(0.9) is 58.45 μιη; D(4,3) is 21.19 μηι.
Example-8: Preparation of 2-((6-chloro-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl) methyl)benzonitrile (Formula-4)
A mixture of 6-chloropyrimidine-2,4(lH,3H)-dione compound of formula-2 (60 Kg), triethylamine (49.6 Kg) and toluene (451 Lt) was stirred for 40 min at 25-30°C. A solution of 2-(bromomethyl)benzonitrile compound of formula-3 (80.4 Kg) in toluene (451 Lt) was slowly added to the reaction mixture at 25-30°C. Heated the reaction mixture to 100- 105°C and stirred for 2 hrs at the same temperature. Reduced the temperature of the reaction mixture to 70-75°C and water was slowly added to it. Cooled the reaction mixture to 25- 30°C and stirred for 45 min at the same temperature. Filtered the precipitated solid, washed with toluene and water mixed solution and then spin dried the material. The obtained compound was added to a mixture of N,N-dimethylformamide (31 Lt) and toluene (240 Lt) at 25-30°C. Heated the reaction mixture to 90-95°C and stirred for 45 min at the same temperature. Slowly cooled the reaction mixture to 0-5°C and stirred for 45 min at the same temperature. Filtered the solid, washed with toluene and then dried the material to provide the title compound.
Yield: 81.1 Kg. Example-9: Preparation of 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l(2H)-yl) methyl)benzonitrile (Formula-5)
Dimethyl sulfate (52.5 Lt) was slowly added to a mixture of 2-((6-chloro-2,4-dioxo- 3,4-dihydropyrimidin-l (2H)-yl)methyl)benzonitrile compound of formula-4 (72 kg), methyl isobutyl ketone (360 Lt) and potassium carbonate (76.1 Kg) at 25-30°C. Heated the reaction mixture to 55-60°C and stirred for 20 hrs at the same temperature. Distilled off the solvent completely from the reaction mixture under reduced pressure. Dichloromethane followed by water were added to the obtained compound at 25-30°C and stirred the reaction mixture for 15 min at the same temperature. Both the organic and aqueous layers were separated and washed the organic layer with aqueous potassium carbonate solution. Distilled off the solvent completely from the organic layer and co-distilled with cyclohexane. 216 Lt of cyclohexane w:as added to the obtained compound at 25-30°C and stirred the reaction mixture for 45 min at the same temperature. Filtered the solid, washed with cyclohexane and then dried the material to provide the title compound.
Yield: 73.6 Kg.
Example-10: Preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile hydrochloride (Formula-lb)
2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l (2H)-yl)methyl)benzonitrile compound of forrmula-5 (60 Kg) was added to a mixture of acetonitrile (300 Lt) and (R)- piperidin-3 -amine dihydrochloride (41.4 Kg) at 25-30°C under nitrogen atmosphere. Heated the reaction mixture to 70-75°C, potassium carbonate (156 Kg) was slowly added to it and stirred the reaction mixture for 7 hrs at the same temperature. Cooled the reaction mixture to 25-30°C and filtered. Isopropyl alcohol (240 Lt) was added to the filtrate at 25-30°C and cooled the reaction mixture to 10-15°C. Isopropyl alcohol-HCl (240 Lt) was slowly added to the reaction mixture at 10-15°C. 100 gm of 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl- 2!4-dioxo-3,4-dihydropyrimidin-l (2H)-yl}methyl)benzonitrile hydrochloride seed material was added to the reaction mixture at 10-15°C and stirred the reaction mixture for 2 hrs at the same temperature. Filtered the precipitated solid, washed with a mixture of isopropyl alcohol and acetonitrile and then dried the material. The obtained solid was added to n-propanol (300 Lt) at 25-30°C. Heated the reaction mixture to 75-80°C and stirred for 20 min at the same temperature. Cooled the reaction mixture to 25-30°C and stirred for 15 min at the same temperature. Filtered the solid, washed with n-propanol and then dried the material to provide the title compound.
Yield: 69.3 Kg. Example-11 : Preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile hydrochloride (Formula-lb)
2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l (2H)-yl)methyl)benzonitrile compound of forrmula-5 (100 gm) was added to a mixture of acetonitrile (500 ml) and (R)- piperidin-3-amine dihydrochloride (69 gm) at 25-30°C under nitrogen atmosphere. Heated the reaction mixture to 70-75°C. Potassium carbonate (260 gm) was slowly added to the reaction mixture at 70-75°C and stirred for 8 hrs at the same temperature. Cooled the reaction mixture to 25-30°C and then filtered. Isopropyl alcohol (400 ml) was added to the filtrate at 25-30°C and cooled the reaction mixture to 10-15°C. Isopropyl alcohol-HCl (400 ml) was slowly added to the reaction mixture at 10-1 °C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with a mixture of isopropyl alcohol and acetonitrile and then dried the material. The obtained solid was added to n-propanol (500 ml) at 25-30°C. Heated the reaction mixture to 75-80°C and stirred for 20 min at the same temperature. Cooled the reaction mixture to 25-30°C and stirred for 15 min at the same temperature. Filtered the solid, washed with n-propanol and then dried the material to provide the title compound.
Yield: 106.0 gm; Purity by HPLC: 99.98%; Dimer impurity: 0.01 %. Example-12: Preparation of 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate (Formula-la)
Aqueous sodium carbonate solution (24.5 Kg of sodium carbonate in 232 Lt of water) was added to a mixture of 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin- l (2H)-yl}methyl)benzonitrile hydrochloride compound of formula- l b (58 Kg) and dichloromethane (290 Lt) at 25-30°C and stirred the reaction mixture for 20 min at the same temperature. Both the organic and aqueous layers were separated and washed the organic layer with water. Benzoic acid (18.9 Kg) was added to the organic layer at 25-30°C and stirred for 10 min at the same temperature, Distilled off the solvent completely from the reaction mixture and co-distilled with n-propanol. 500 Lt of n-propanol was added to the obtained compound at 25-30°C. Heated the reaction mixture to 95-100°C, stirred for 1 hr at the same temperature and then filtered the reaction mixture. Slowly cooled the filtrate to 25-30°C and stirred for 2 hrs at the same temperature. Filtered the precipitated solid, washed with n-propanol and then dried the material to provide the title compound.
Yield: 63.4 Kg; Water content: 0.19% w/w; Purity by HPLC: 99.96%.
Alcohol impurity: Not detected; Chloro impurity: 0.01%; Dimer impurity: Not detected: 3-amino piperidine content: Not detected; (S)-isomer impurity: Not detected; Highest individual unspecified impurity: 0.01 %.
PSD: D(0.1) is 5,62 μηι; D(0.5) is 21 .75 μπι; D(0,9) is 48.16 μπι.

Claims

We Claim:
1. A process for the preparation of 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin-l (2H)-yl}methyl)benzonitrile benzoate compound of formula- l a, comprising of;
a) Reacting the 6-chloropyrimidine-2!4(lH,3H)-dione compound of formula-2
Figure imgf000026_0001
Formula-2
with 2-(bromomethyl)benzonitrile compound of formula-3
Figure imgf000026_0002
Formula-3
in presence of a suitable base in a suitable solvent to provide 2-((6-chloro-2,4-dioxo- 3,4-dihydropyrimidin-l (2H)-yl)methyl)benzonitrile compound of formula-4,
Figure imgf000026_0003
Formula-4
b) methylation of compound of formula-4 with a suitable methylating agent in a suitable solvent in presence of a suitable base to provide 2-((6-chloro-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l (2H)-yl)methyl)benzonitrile compound of formula-5,
Figure imgf000026_0004
Formula-5
c) reacting the compound of formula-5 with (R)-piperidin-3-amine free base or its acid- addition salt in presence of a suitable base in a suitable solvent to provide 2-({6- [(3R)-3-aminopiperidin- l -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l (2H)- yl}methyl)benzonitrile compound of formula- 1 ,
Figure imgf000027_0001
Formula- 1
d) optionally purifying the compound of formula- 1 ,
e) treating the compound of formula- 1 obtained in step-c) or step-d) with benzoic acid in a suitable solvent to provide its benzoate salt compound of formula- l a,
f) isolating the compound of formula- l a from a suitable solvent or mixture of solvents, with the proviso that the suitable methylating agent used in step-b) is not methyl halide or methanol/ PPh^/azodicarboxylate system (Mitsunobu reaction).
A process according to claiml , wherein,
in step-a) to step-c) the suitable base is selected from organic bases, inorganic bases, organolithium bases, organosilicon bases or their mixtures;
in step-b) the suitable methylating agent is selected from dimethyl sulfate, dimethyl carbonate, trimethyloxonium tetrafluoroborate (Me3O.BF4), trimethylphosphate, methyl alkyl/aryl sulfonates such as methyl methane sulfonate (MeOMs), methyl ethanesulfonate, methyl benzenesulfonate, methyl toluene sulfonate (MeOTs), methyl trifluoromethanesulfonate (MeOTf), tetramethylammonium salts such as tetramethylammonium halides, trimethylsilyldiazomethane (TMSD);
in step-d) purification of compound of formula- 1 involves the salt formation technique by treatment of compound of formula- 1 with a suitable acid in a suitable solvent followed by neutralizing the obtained acid-addition salt with a suitable base to provide pure compound of formula- 1 ;
in step-a) to step-f) the suitable solvent is selected from hydrocarbon solvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures.
3. A process for the preparation of 2-({ 6-[(3R)-3-aminopiperidin- l -yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin- l (2H)-yl} methyl)benzonitrile benzoate compound of formula- l a, comprising of;
a) Reacting the 6-chloropyrimidine-2,4( l H,3H)-dione compound of formula-2 with 2-(bromomethyl)benzonitrile compound of formula-3 in presence of triethylamine in toluene to provide 2-((6-chloro-2,4-dioxo-3,4-dihydropyrimidin- l (2H)-yl)methyl) benzonitrile compound of formula-4,
b) methylation of compound of formula-4 with dimethyl sulfate in presence of potassium carbonate in methyl isobutyl ketone to provide 2-((6-chloro-3 -methyl-2,4- dioxo-3 ,4-dihydropyrimidin- l (2H)-yl)methyl)benzonitrile compound of formula-5 , c) reacting the compound of formula-5 with (R)-piperidin-3 -amine dihydrochloride in presence of potassium carbonate in acetonitrile to provide 2-({ 6-[(3R)-3- aminopiperidin- 1 -yl]-3-methyl-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl} methyl) benzonitrile compound of formula- 1 ,
d) treating the compound of formula- 1 with isopropyl alcohol-HCl in isopropyl alcohol to provide 2-( { 6-[(3R)-3-aminopiperidin- l -yl]-3-methyl-2,4-dioxo-3 ,4-dihydro pyrimidin- l (2H)-yl}methyl)benzonitrile hydrochloride compound of formula- l b followed by neutralizing the obtained HC1 salt with aqueous sodium carbonate solution in dichloromethane to provide pure compound of formula- 1 ,
e) treating the compound of formula- 1 with benzoic acid in dichloromethane to provide its benzoate salt compound of formula- l a,
f) isolating the compound of formula- l a by recrystallizing it from n-propanol to provide pure compound of formula- l a.
4. A process for the preparation of 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l (2H)-yl)methyl)benzonitrile compound of formula-5, comprising of methylating the 2- ((6-chloro-2,4-dioxo-3,4-dihydropyrimidin- 1 (2H)-yl)methyl)benzonitrile compound of formula-4 by reacting it with a suitable methylating agent in a suitable solvent in presence of a suitable base to provide compound of formula-5, with the proviso that the methylating agent is not methyl halide or methanol/PPh}/azodicarboxylate system (Mitsunobu reaction).
5. A process according to claim 4, wherein
the suitable methylating agent is selected from dimethyl sulfate, dimethyl carbonate, trimethyloxonium tetrafluoroborate (Me30.BF4), trimethylphosphate, methyl alkyl/aryl sulfonates such as methyl methane sulfonate (MeOMs), methyl ethanesulfonate, methyl benzenesulfonate, methyl toluene sulfonate (MeOTs), methyl trifluoromethanesulfonate (MeOTf), tetramethylammonium salts such as tetramethylammonium halides, trimethylsilyldiazomethane (TMSD);
the suitable base is selected from inorganic bases, organic bases, organolithium bases, organosilicon bases or their mixtures;
the suitable solvent is selected from hydrocarbon solvents, chloro solvents, ether solvents, ester solvents, polar-aprotic solvents, ketone solvents, nitrile solvents, alcohol solvents, polar solvents or their mixtures.
6. A process for the preparation of 2-((6-chloro-3-methyl-2,4-dioxo-3 ,4-dihydropyrimidin- l (2H)-yl)methyl)benzonitrile compound of formula-5, comprising of methylating the 2-
((6-chloro-2,4-dioxo-3 ,4-dihydropyrimidin- 1 (2H)-yl)methyl)benzonitrile compound of formula-4 with dimethyl sulfate to provide compound of formula-5.
7. The process according to claim 6, wherein the amount of dimethyl sulfate employed is ranging from 1 .0 to 4.0 mole ratio per one mole of compound of formula-4.
8. The process according to claim 7, wherein the amount of dimethyl sulfate employed is preferably ranging from 2.0 to 3.5 mole ratio, more preferably 2.5 to 3.0 mole ratio per one mole of compound of formula-4.
9. The process according to claim 6, wherein the methylation reaction is carried out at a temperature ranging from 20°C to reflux temperature of the solvent employed.
10. A process for the preparation of 2-({6-[(3R)-3-aminopiperidin- l -yl]-3-methyl-2,4-dioxo- 3 ,4-dihydropyrimidin- l (2H)-yl}methyl)benzonitrile hydrochloride compound of formula- l b, comprising of treating the 2-({6-[(3R)-3-aminopiperidin- l -yl]-3-methyl-2,4- dioxo-3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula-1 with a suitable HC1 source selected from methanol-HCl, ethanol-HCl, isopropyl alcohol-HCl, ethyl acetate-HCl, diethyl ether-HCl optionally in presence of a solvent to provide compound of formula- lb.
11. A process for the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l- yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- la, comprising of;
a) Treating the 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula-1 with benzoic acid in dichloromethane,
b) distilling off dichloromethane from the reaction mixture to obtain crystalline solid, c) dissolving the obtained solid in n-propanol by heating,
d) cooling the reaction mixture,
e) filtering the precipitated solid and drying to provide crystalline form-A of compound of formula- la.
12. A process for the preparation of crystalline form-A of 2-({6-[(3R)-3-aminopiperidin-l- yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl}methyl)benzonitrile benzoate compound of formula- 1 a, comprising of;
a) Treating the 2-({6-[(3R)-3-aminopiperidin-l-yl]-3-methyl-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl}methyl)benzonitrile compound of formula-1 with benzoic acid in dichloromethane,
b) distilling off dichloromethane completely from the reaction mixture to obtain crystalline form-A of compound of formula- la.
13. Use of dimethyl sulfate for the methylation of 2-((6-chloro-2,4-dioxo-3,4- dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-4 to provide 2-((6- chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l(2H)-yl)methyl)benzonitrile compound of formula-5.
14. Process for the purification of 2-({6-[(3R)-3-aminopiperidin- l -yl]-3-methyl-2,4-dioxo- 3,4-dihydropyrimidin-l (2H)-yl}methyl)benzonitrile hydrochloride compound of formula- l b, comprising of;
a) Adding n-propanol to compound of formula- lb,
b) heating the reaction mixture,
c) cooling the reaction mixture,
d) filtering the solid and drying the material to provide pure compound of formula- l b.
15. 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-l (2H)- yl}methyl)benzonitrile benzoate compound of formula- l a having dimer impurity content not more than 0.15% obtained by the process according to any of the preceding claims.
16. 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l (2H)- yl }methyl)benzonitrile hydrochloride compound of formula- lb having purity greater than 99.5%, preferably greater than 99.8% by HPLC obtained by the process according to any of the preceding claims.
17. 2-({6-[(3R)-3-aminopiperidin-l -yl]-3-methyl-2,4-dioxo-3,4-dihydropyrimidin- l (2H)- yl}methyl)benzonitrile benzoate compound of formula- l a having purity greater than 99.5%, preferably greater than 99.9% by HPLC obtained by the process according to any of the preceding claims.
PCT/IN2016/000057 2015-03-02 2016-03-01 Improved process for the preparation of 2-({6-[(3r)-3-aminopiperidin-1-yl]-3-methyl-2,4-dioxo-3,4-dihvdropvrimidin-1(2h)-yl}methyl)benzonitrile and pharmaceutically acceptable salts thereof WO2016139677A1 (en)

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CN106496194A (en) * 2016-09-13 2017-03-15 合肥拓锐生物科技有限公司 A kind of dimeric preparation method of Egelieting
CN111253324A (en) * 2020-03-17 2020-06-09 湖北扬信医药科技有限公司 Preparation method of alogliptin impurity
CN114057685A (en) * 2020-07-31 2022-02-18 西安新通药物研究有限公司 Preparation method of alogliptin benzoate with high yield

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Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN106496194A (en) * 2016-09-13 2017-03-15 合肥拓锐生物科技有限公司 A kind of dimeric preparation method of Egelieting
CN111253324A (en) * 2020-03-17 2020-06-09 湖北扬信医药科技有限公司 Preparation method of alogliptin impurity
CN114057685A (en) * 2020-07-31 2022-02-18 西安新通药物研究有限公司 Preparation method of alogliptin benzoate with high yield

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