WO2015153780A1 - Crispr/cas-related methods and compositions for treating primary open angle glaucoma - Google Patents

Crispr/cas-related methods and compositions for treating primary open angle glaucoma Download PDF

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WO2015153780A1
WO2015153780A1 PCT/US2015/023906 US2015023906W WO2015153780A1 WO 2015153780 A1 WO2015153780 A1 WO 2015153780A1 US 2015023906 W US2015023906 W US 2015023906W WO 2015153780 A1 WO2015153780 A1 WO 2015153780A1
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nucleic acid
nucleotides
domain
molecule
targeting domain
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PCT/US2015/023906
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French (fr)
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Morgan L. MAEDER
David A. Bumcrot
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Editas Medicine, Inc.
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Priority to US15/300,991 priority Critical patent/US20170029850A1/en
Priority to EP15716679.4A priority patent/EP3126495A1/en
Priority to EP19155242.1A priority patent/EP3540061A1/en
Publication of WO2015153780A1 publication Critical patent/WO2015153780A1/en

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Definitions

  • the invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, and applications thereof in connection with Primary Open Angle Glaucoma (POAG).
  • POAG Primary Open Angle Glaucoma
  • Glaucoma is the second leading cause of blindness in the world.
  • Primary Open Angle Glaucoma (POAG) is the leading cause of glaucoma, representing more than 50% of glaucoma in the United States (Quigley et al. Investigations in Ophthalmology and Visual Sciencel997; 38:83-91). POAG affects 3 million subjects in the United States (Glaucoma Research Foundation: www.glaucoma.org; Accessed March 27, 2015). Approximately 1% of subjects ages 40-89 have POAG.
  • Aqueous humor is produced by the ciliary body located in the anterior chamber of the eye.
  • the vast majority (80%) of AH drains through the trabecular meshwork (TM) to the episcleral venous system.
  • the remainder (20%) of AH drains through the interstitium between the iris root and ciliary muscle (Feisal et al., Canadian Family Physician 2005; 51(9): 1229-1237).
  • POAG is likely due to decreased drainage through the trabecular meshwork.
  • Decreased outflow of AH results in increased intraocular pressure (IOP). IOP causes damage to the optic nerve and leads to progressive blindness.
  • IOP intraocular pressure
  • MYOC Mutations in MYOC have been shown to account for 3% of POAG. Approximately 90,000 individuals in the United States have POAG that is caused by MYOC mutations. Many patients with MYOC mutations develop rapidly advancing disease and early-onset POAG, including juvenile-onset POAG. MYOC mutations are inherited in an autosomal dominant fashion. Disease-causing mutations cluster in the olfactomedin domain of exon 3 of the MYOC gene. The most common MYOC mutation causing severe, early onset disease is a proline to leucine substitution at amino acid position 370 (P370L) (Waryah et al., Gene 2013; 528(2):356-9). The most common MYOC mutation is a missense mutation at amino acid position 368 (Q368X). This mutation is associated with less severe disease, termed late-onset POAG.
  • POAG Treatments that reduce IOP can slow the progression of POAG.
  • Trabeculectomy surgery and eye drops are both effective in in reducing IOP.
  • Eye drops include alpha- adregergic antagonists and beta-adrenergic antagonists.
  • POAG is known as a silent cause of blindness, as it is painless and leads to progressive blindness if left untreated.
  • Methods and compositions discussed herein allow the correction of disorders of the eye, e.g., disorders that affect trabecular meshwork cells, photoreceptor cells and any other cells in the eye, including those of the iris, ciliary body, optic nerve or aqueous humor.
  • disorders of the eye e.g., disorders that affect trabecular meshwork cells, photoreceptor cells and any other cells in the eye, including those of the iris, ciliary body, optic nerve or aqueous humor.
  • methods and compositions discussed herein provide for treating or delaying the onset or progression of (POAG).
  • POAG is a common form of glaucoma, characterized by degeneration of the trabecular meshwork, which leads to obstruction of the normal ability of aqueous humor to leave the eye without closure of the space (e.g., the "angle") between the iris and cornea. This obstruction leads to increased intraocular pressure (“IOP”), which can result in progressive visual loss and blindness if not treated appropriately and in a timely fashion.
  • IOP intraocular pressure
  • POAG is a progressive ophthalmologic disorder characterized by increased intraocular pressure (IOP).
  • methods and compositions discussed herein provide for the correction of the underlying cause of Primary Open Angle Glaucoma (POAG).
  • POAG Primary Open Angle Glaucoma
  • Mutations in the MYOC gene have been shown to account for 3% of POAG. Certain mutations in MYOC lead to severe, early onset POAG. Mutations in the MYOC gene leading to POAG can be described based on the mutated amino acid residue(s) in the MYOC protein. Severe, early- onset POAG can be caused by mutations in the MYOC gene, including mutations in exon 3. Exemplary mutations include, but are not limited to the mutations T377R, 1477, and P370L (Zhuo et al., Molecular Vision 2008; 14: 1533-1539).
  • the target mutation is at P370, e.g., P370L, in the MYOC gene.
  • the target mutation is at 1477, e.g., I477N or I477S, in the MYOC gene.
  • the target mutation is at T377, e.g., T377R, in the MYOC gene.
  • the target mutation is at Q368, e.g., Q368stop, in the MYOC gene.
  • the target mutation is a mutational hotspot between amino acid sequence positions 246-252 in the MYOC gene.
  • the target mutation is a mutational hotspot between amino acid sequence positions, e.g., amino acids 368-380, amino acids 368- 370 + 377-380, amino acids 364-380, or amino acids 347-380 in the MYOC gene.
  • the target mutation is a mutational hotspot between amino acid sequence positions 423-437 (e.g., amino acids 423-426, amino acids 423-427 and amino acids 423- 437) in the MYOC gene.
  • the target mutation is a mutational hotspot between amino acid sequence positions 477-502 in the MYOC gene.
  • POAG target point position refers to a target position in the MYOC gene, typically a single nucleotide, which, if mutated, can result in a mutant protein and give rise to POAG.
  • the POAG target point position is a position in the MYOC gene at which a change can give rise to a mutant protein having a mutation at Q368 (e.g., Q368stop), P370 (e.g., the substitution P370L), T377 (e.g., the substitution T377R), or 1477 (e.g., the substitution I477N or I477S).
  • POAG target hotspot position refers to a target position in a region of the MYOC gene, which: (1) encodes amino acid sequence positions 246-252, amino acid sequence positions 368-380, amino acid sequence positions 423-437, or amino acid sequence positions 477-502; and (2) when mutated, can give rise to a mutation in one of the aforesaid amino acid sequence regions and give rise to POAG.
  • a mutation at a POAG target point position or a POAG target hotspot position is corrected by homology directed repair (HDR), as described herein.
  • HDR homology directed repair
  • methods and compositions discussed herein may be used to alter the MYOC gene to treat or prevent POAG by targeting the MYOC gene, e.g., the non-coding or coding regions, e.g., the promoter region, or a transcribed sequence, e.g., intronic or exonic sequence.
  • coding sequence e.g., a coding region, e.g., an early coding region, of the MYOC gene, is targeted for alteration and knockout of expression.
  • the methods and compositions discussed herein may be used to alter the MYOC gene to treat or prevent POAG by targeting the coding sequence of the MYOC gene.
  • the gene e.g., the coding sequence of the MYOC gene
  • is targeted to knockout the gene e.g., to eliminate expression of the gene, e.g., to knockout both alleles of the MYOC gene, e.g., by induction of an alteration comprising a deletion or mutation in the MYOC gene.
  • the method provides an alteration that comprises an insertion or deletion, while not wishing to be bound by theory, in an embodiment, a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically active Cas9 (eaCas9) molecule.
  • NHEJ non-homologous end joining
  • a coding region, e.g., an early coding region, of the MYOC gene is targeted to knockout the MYOC gene.
  • targeting affects both alleles of the MYOC gene.
  • a targeted knockout approach reduces or eliminates expression of functional MYOC gene product.
  • the method provides an alteration that comprises an insertion or deletion.
  • the methods and compositions discussed herein may be used to alter the MYOC gene to treat or prevent POAG by targeting non-coding sequence of the MYOC gene, e.g., promoter, an enhancer, an intron, 3'UTR, and/or polyadenylation signal.
  • the gene e.g., the non-coding sequence of the MYOC gene
  • the method provides an alteration that comprises an insertion or deletion.
  • POAG target knockout position refers to a target position in the
  • MYOC gene which if altered by NHEJ-mediated alteration, results in reduction or elimination of expression of a functional MYOC gene product.
  • the position is in the MYOC coding region, e.g., an early coding region.
  • methods and compositions discussed herein may be used to alter the expression of the MYOC gene to treat or prevent POAG by targeting the MYOC gene, e.g., a promoter region of the MYOC gene.
  • the promoter region of the MYOC gene is targeted to knockdown expression of the MYOC gene.
  • a targeted knockdown approach reduces or eliminates expression of a mutated MYOC gene.
  • a targeted knockdown approach is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein) to alter transcription, e.g., block, reduce, or decrease transcription, of the MYOC gene.
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein
  • a targeted knockdown approach is mediated by NHEJ using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically inactive Cas9 (eiCas9) molecule.
  • POAG target knockdown position refers to a position, e.g., in the MYOC gene, which if targeted by an eiCas9 molecule or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional MYOC gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the MYOC promoter sequence. In an embodiment, a position in the promoter sequence of the MYOC gene is targeted by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9- fusion protein, as described herein.
  • eiCas9 enzymatically inactive Cas9
  • POAG target position refers to any of the POAG target point positions, POAG target hotspot positions, POAG target knockout positions and/or POAG target knockdown positions in the MYOC gene, as described herein.
  • gRNA molecule e.g., an isolated or non- naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the MYOC gene.
  • the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene.
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of a POAG target position.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of a POAG target position in the MYOC gene.
  • a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the POAG target position in the MYOC gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of the POAG target position in the MYOC gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position.
  • the breaks e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a POAG target position in the MYOC gene.
  • the breaks, e.g., double strand or single strand breaks are positioned on one side, e.g., upstream or downstream, of a nucleotide of a POAG target position in the MYOC gene.
  • a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below.
  • the targeting domains are configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of a POAG target position.
  • the first and second gRNA molecules are configured such, that when guiding a Cas9 molecule, e.g., a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of a POAG target position in the MYOC gene.
  • the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 molecule is a nickase.
  • the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500nucleotides of the target position.
  • a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position.
  • the targeting domain of the first, second and third gRNA molecule is configured
  • a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position.
  • multiple gRNAs when multiple gRNAs are used to generate (1) two single stranded breaks in close proximity, (2) two double stranded breaks, e.g., flanking a POAG target position, e.g., a mutation (e.g., to remove a piece of DNA, e.g., a insertion mutation) or to create more than one indel in an early coding region, (3) one double stranded break and two paired nicks flanking a POAG target position, e.g., a mutation (e.g., to remove a piece of DNA, e.g., a insertion mutation) or (4) four single stranded breaks, two on each side of a mutation, that they are targeting the same POAG target position. It is further contemplated herein that multiple gRNAs may be used to target more than one POAG target position (e.g., mutation) in the same gene.
  • a mutation e.g., to remove a piece of DNA, e.g
  • the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecules are complementary to opposite strands of the target nucleic acid molecule.
  • the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
  • the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., Alu repeats, in the target domain.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
  • the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered.
  • the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events.
  • the gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence described herein, e.g., from any one of Tables 1A-1E, 2A-2E, 3A-3E, 4A- 4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as a targeting domain sequence described herein, e.g., from any one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A- 19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • each guide RNA is independently selected from any one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A- 15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1E, 21A-21D, 22A-22E, or 23A-23B.
  • the targeting domain is independently selected from those in Tables 1A-1E, 21A-21D, 22A-22E, or 23A-23B.
  • each guide RNA is selected from one of Tables 1A-1E, 21A-21D, 22A-22E, or 23A-23B.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1E.
  • the targeting domain is independently selected from those in Tables 1A-1E.
  • the targeting domain is independently selected from Table 1A.
  • each guide RNA is selected from one of Tables 1A-1E.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 21A-21D.
  • the targeting domain is independently selected from those in Tables 21A-21D. For example, in certain
  • the targeting domain is independently selected from Table 21A.
  • each guide RNA is selected from one of Tables 21A-21D.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 22A-22E.
  • the targeting domain is independently selected from those in Tables 22A-22E. For example, in certain
  • the targeting domain is independently selected from Table 22 A.
  • each guide RNA is selected from one of Tables 22A-22E.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L
  • the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 23A-23B.
  • the targeting domain is independently selected from those in Tables 23A-23B. For example, in certain
  • the targeting domain is independently selected from Table 23 A.
  • each guide RNA is selected from one of Tables 23A-23B.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2E, 18A-18D, 19A-19E, or 20A-20D.
  • the targeting domain is independently selected from those in Tables 2A-2E, 18A-18D, 19A-19E, or 20A-20D.
  • each guide RNA is selected from one of Tables 2A-2E, 18A-18D, 19A-19E, or 20A-20D.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2E.
  • the targeting domain is independently selected from those in Tables 2A-2E.
  • the targeting domain is independently selected from Table 2A.
  • each guide RNA is selected from one of Tables 2A-2E.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18D.
  • the targeting domain is independently selected from those in Tables 18A-18D.
  • the targeting domain is independently selected from Table 18 A.
  • each guide RNA is selected from one of Tables 18A-18D.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E.
  • the targeting domain is independently selected from those in Tables 19A-19E.
  • the targeting domain is independently selected from Table 19A.
  • each guide RNA is selected from one of Tables 19A-19E.
  • a POAG target position e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20D.
  • the targeting domain is independently selected from those in Tables 20A-20D.
  • the targeting domain is independently selected from Table 20A.
  • each guide RNA is selected from one of Tables 20A-20D.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B.
  • the targeting domain is independently selected from those in Tables 3A-3E, 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, or 17A-17B.
  • each guide RNA is selected from one of Tables 3A-3E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3E.
  • the targeting domain is independently selected from those in Tables 3A-3E.
  • the targeting domain is independently selected from Table 3A.
  • each guide RNA is selected from one of Tables 3A-3E.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 12A-12D.
  • the targeting domain is independently selected from those in Tables 12A-12D.
  • the targeting domain is independently selected from Table 12A.
  • each guide RNA is selected from one of Tables 12A-12D.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13E.
  • the targeting domain is independently selected from those in Tables 13A-13E.
  • the targeting domain is independently selected from Table 13A.
  • each guide RNA is selected from one of Tables 13A-13E.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14C.
  • the targeting domain is independently selected from those in Tables 14A-14C. In another embodiment, the targeting domain is independently selected from Table 14A.
  • each guide RNA is selected from one of Tables 14A-14C.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 15A-15D.
  • the targeting domain is independently selected from those in Tables 15A-15D.
  • the targeting domain is independently selected from Table 15A.
  • each guide RNA is selected from one of Tables 15A-15D.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 16A-16E.
  • the targeting domain is independently selected from those in Tables 16A-16E.
  • the targeting domain is independently selected from Table 16A.
  • each guide RNA is selected from one of Tables 16A-16E.
  • a POAG target position e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 17A-17B.
  • the targeting domain is independently selected from those in Tables 17A-17B.
  • the targeting domain is independently selected from Table 17A.
  • each guide RNA is selected from one of Tables 17A-17B.
  • the early coding region of the MYOC gene is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 4A-4E, 6A-6E, 7A-7G, or 8A-8E.
  • the targeting domain is independently selected from those in Tables 4A-4E, 6A-6E, 7A-7G, or 8A-8E.
  • each guide RNA is selected from one of Tables 4A-4E, 6A-6E, 7A-7G, or 8A-8E.
  • the early coding region of the MYOC gene is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 4A-4E.
  • the targeting domain is independently selected from those in Tables 4A-4E.
  • the targeting domain is independently selected from Table 4A.
  • each guide RNA is selected from one of Tables 4A-4E.
  • the early coding region of the MYOC gene is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 6A-6E.
  • the targeting domain is independently selected from those in Tables 6A-6E.
  • the targeting domain is independently selected from Table 6A.
  • each guide RNA is selected from one of Tables 6A-6E.
  • the early coding region of the MYOC gene is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7G.
  • the targeting domain is independently selected from those in Tables 7A-7G.
  • the targeting domain is independently selected from Table 7A.
  • each guide RNA is selected from one of Tables 7A-7G.
  • the early coding region of the MYOC gene is targeted, e.g., for correction.
  • the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 8A-8E.
  • the targeting domain is independently selected from those in Tables 8A-8E.
  • the targeting domain is independently selected from Table 8A.
  • each guide RNA is selected from one of Tables 8A-8E.
  • the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene.
  • the targeting domain is configured to target the promoter region of the MYOC gene to reduce (e.g., block) transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase.
  • One or more gRNA may be used to target an eiCas9 molecule to the promoter region of the MYOC gene.
  • the targeting domain when the MYOC promoter region is targeted, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 5A-5F, 9A-9E, 10A- 10G, or 11A-11E. In an embodiment, the targeting domain is independently selected from those in Tables 5A-5F, 9A-9E, 10A-10G, or 11A-11E.
  • each guide RNA is selected from one of 5A-5F, 9A-9E, 10A- 10G, or 11A-11E.
  • the targeting domain when the MYOC promoter region is targeted, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 5A-5F. In an embodiment, the targeting domain is independently selected from those in Tables 5A-5F. In another embodiment, the targeting domain is independently selected from Table 5A.
  • each guide RNA is selected from one of Tables 5A-5F.
  • the targeting domain when the MYOC promoter region is targeted, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 9A-9E. In an embodiment, the targeting domain is independently selected from those in Tables 9A-9E. In another embodiment, the targeting domain is independently selected from Table 9A.
  • each guide RNA is selected from one of Tables 9A-9E.
  • the targeting domain when the MYOC promoter region is targeted, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 10A-10G. In an embodiment, the targeting domain is independently selected from those in Tables 10A-10G. In another embodiment, the targeting domain is independently selected from Table 10A.
  • each guide RNA is selected from one of Tables 10A-10G.
  • the targeting domain when the MYOC promoter region is targeted, can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 11A-11E. In an embodiment, the targeting domain is independently selected from those in Tables 11A-11E. In another embodiment, the targeting domain is independently selected from Table 11A.
  • each guide RNA is selected from one of Tables 11A-11E.
  • the gRNA e.g., a gRNA comprising a targeting domain, which is complementary with the MYOC gene, is a modular gRNA.
  • the gRNA is a unimolecular or chimeric gRNA.
  • the targeting domain which is complementary with a target domain from the POAG target position in the MYOC gene is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length. In still another embodiment, the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a gRNA as described herein may comprise from 5' to 3': a targeting domain (comprising a "core domain", and optionally a "secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a "core domain”, and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain”, and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain", and optionally a "secondary domain”
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • a cleavage event e.g., a double strand or single strand break, is generated by a Cas9 molecule.
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 enzymatically active Cas9
  • the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • eiCas9 enzymatically inactive Cas9
  • KRAB Kriippel-associated box
  • the eaCas9 molecule catalyzes a double strand break.
  • the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A.
  • the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
  • the eaCas9 molecule is an N- terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., an N863A mutation.
  • a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
  • nucleic acid e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a POAG target position in the MYOC gene as disclosed herein.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene.
  • a gRNA molecule e.g., a first gRNA molecule
  • a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene.
  • the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene.
  • a gRNA molecule e.g., a first gRNA molecule
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A- 11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of 1A-1E, 2A-2E, 3A-3E,
  • the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in 1A-1E, 2A-2E, 3A- 3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA.
  • the nucleic acid encodes a chimeric gRNA.
  • the nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length.
  • the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a nucleic acid encodes a gRNA comprising from 5' to 3': a targeting domain (comprising a "core domain", and optionally a "secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a "core domain”, and optionally a "secondary domain”
  • a first complementarity domain comprising from 5' to 3'
  • a targeting domain comprising from 5' to 3': a targeting domain (comprising a "core domain", and optionally a "secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • the proximal domain and tail domain are taken together as a single domain.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
  • the Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule that forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • eaCas9 molecule e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule that forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
  • a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary.
  • a single strand break is formed in the strand of the target nucleic acid other than the strand to which to which the
  • the eaCas9 molecule catalyzes a double strand break.
  • the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
  • the said eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A.
  • the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
  • the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A.
  • the eaCas9 molecule is an N- terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., an N863A mutation.
  • a nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule.
  • the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kruppel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
  • eiCas9 enzymatically inactive Cas9
  • KRAB Kruppel-associated box
  • a nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further may comprise (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the MYOC gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the MYOC gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the MYOC gene.
  • a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • a nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene, either alone or in combination with the break positioned by the first and/or second gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
  • eiCas9 enzymatically inactive Cas9
  • eiCas9 fusion protein e.g., an eiCas9 fused to a transcription repressor domain
  • a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene.
  • a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain)
  • the nucleic acid encodes a second gRNA molecule.
  • the second gRNA is selected to target the same POAG target position as the first gRNA molecule.
  • the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule.
  • the third gRNA molecule and the fourth gRNA molecule are selected to target the same POAG target position as the first and second gRNA molecules.
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • the nucleic acid encodes a second gRNA molecule comprising a targeting domain selected from those in Tables 1A-1E, 2A-2E, 3A- 3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • a targeting domain selected from those in Tables 1A-1E, 2A-2E, 3A- 3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E
  • the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A- 22E, or 23A-23B.
  • the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A- 7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
  • the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA.
  • the nucleic acid encoding a second gRNA is a chimeric gRNA.
  • the third and fourth gRNA may be a modular gRNA or a chimeric gRNA. When multiple gRNAs are used, any combination of modular or chimeric gRNAs may be used.
  • a nucleic acid may encode a second, a third, and/or a fourth gRNA, each
  • the nucleic acid independently, comprising a targeting domain comprising 16 nucleotides or more in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length.
  • the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA, each independently, comprising from 5 ' to 3 ' : a targeting domain (comprising a "core domain", and optionally a "secondary domain”); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • a targeting domain comprising a "core domain", and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain", and optionally a "secondary domain”
  • a first complementarity domain comprising a "core domain", and optionally a "secondary domain”
  • a first complementarity domain comprising a linking domain; a second complementarity domain; a proximal domain; and a tail domain.
  • the proximal domain and tail domain are taken together as a single domain.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
  • the nucleic acid when the MYOC gene is corrected by HDR, the nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; optionally, (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the MYOC gene, and further optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the MYOC gene; and still further optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the MYOC gene; and further may comprise (d) a template nucleic acid, e.g., a
  • the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
  • the template nucleic acid may comprise a replacement sequence, e.g., a replacement sequence from the Table 24.
  • the template nucleic acid comprises a 5' homology arm, e.g., a 5' homology arm from Table 24.
  • the template nucleic acid comprises a 3' homology arm, e.g., a 3' homology arm from Table 24.
  • a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein.
  • (a) and (b) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno- associated virus (AAV) vector.
  • the nucleic acid molecule is an AAV vector.
  • Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
  • first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules may be AAV vectors.
  • a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein; andfurther comprise (c)(i) a sequence that encodes a second gRNA molecule as described herein and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the MYOC gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the MYOC gene.
  • the nucleic acid comprises (a), (b) and (c)(i). In an embodiment, the nucleic acid comprises (a), (b), (c)(i) and (c)(ii). In an embodiment, the nucleic acid comprises (a), (b), (c)(i), (c)(ii) and (c)(iii). Each of (a) and (c)(i), (c)(ii) and/or (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector.
  • (a) and (c)(i) are on different vectors.
  • a first nucleic acid molecule e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • a second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecules are AAV vectors.
  • each of (a), (b), and (c)(i) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • one of (a), (b), and (c)(i) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c)(i) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • first nucleic acid molecule e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector
  • second nucleic acid molecule e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • (c)(i) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) and (a) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector.
  • the first and second nucleic acid molecule may be AAV vectors.
  • each of (a), (b) and (c)(i) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector.
  • vectors e.g., different viral vectors, e.g., different AAV vector.
  • (a) may be on a first nucleic acid molecule
  • (c)(i) on a third nucleic acid molecule may be AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • different vectors e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), and (d) may be present on more than one nucleic acid molecule, but fewer than three nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i) and (d) may be present on more than one nucleic acid molecule, but fewer than four nucleic acid molecules, e.g., AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • each of (a), (b), (c)(i), (c)(ii) and (d) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
  • nucleic acid molecule e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector.
  • the nucleic acid molecule is an AAV vector.
  • each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors.
  • (b) , (c)(i), (c)(ii), (c)(iii) and (d) may be present on more than one nucleic acid molecule, but fewer than six nucleic acid molecules, e.g., AAV vectors.
  • the nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein.
  • the nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein.
  • the promoter and second promoter differ from one another. In some embodiments, the promoter and second promoter are the same.
  • nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein.
  • compositions comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene, as described herein.
  • the composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein.
  • a composition of (a) and (b) may further comprise
  • a composition of (a), (b) and (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule may further comprise (d) a template nucleic acid, e.g., a template nucleic acid described herein.
  • the composition is a pharmaceutical composition.
  • the compositions described herein, e.g., pharmaceutical compositions described herein can be used in the treatment or prevention of POAG in a subject, e.g., in accordance with a method disclosed herein..
  • a method of altering a cell e.g., altering the structure, e.g., altering the sequence, of a target nucleic acid of a cell, comprising contacting said cell with: (a) a gRNA that targets the MYOC gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets MYOC gene, e.g., a second third and/or fourth gRNA as described herein; and optionally, (d) a template nucleic acid, as described herein.
  • a gRNA that targets the MYOC gene e.g., a gRNA as described herein
  • a Cas9 molecule e.g., a Cas9 molecule as described herein
  • the method comprises contacting said cell with (a) and (b).
  • the method comprises contacting said cell with (a), (b), and (c).
  • the method comprises contacting said cell with (a), (b), (c) and (d).
  • the gRNA of (a) and optionally (c) may be selected from any of 1A-1E, 2A-2E, 3A- 3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A- 6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12
  • the method comprises contacting a cell from a subject suffering from or likely to develop POAG.
  • the cell may be from a subject having a mutation at a POAG target position in the MYOC gene.
  • the cell being contacted in the disclosed method is a target cell from the eye of the subject.
  • the cell may be a trabecular meshwork cell, retinal pigment epithelial cell, a retinal cell, an iris cell, a ciliary body cell and/or the optic nerve.
  • the contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step. In other embodiments, the contacting step may be performed in vivo.
  • the method of altering a cell as described herein comprises acquiring knowledge of the presence of a mutation at a POAG target position in said cell, prior to the contacting step.
  • Acquiring knowledge of the presence of a mutation at a POAG target position in the cell may be by sequencing the MYOC gene, or a portion of the MYOC gene.
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(ii) and/or fourth gRNA (c)(iii).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), (c) and (d).
  • the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c).
  • the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), a nucleic acid which encodes a gRNA of (a) and a template nucleic acid of (d), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(ii) and/or fourth gRNA (c)(iii).
  • contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector, as described herein.
  • a nucleic acid e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector, as described herein.
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes a gRNA of (a) and optionally a second, third and/or fourth gRNA (c).
  • contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
  • contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • a method of treating a subject suffering from or likely to develop POAG e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
  • a gRNA that targets the MYOC gene e.g., a gRNA disclosed herein;
  • a Cas9 molecule e.g., a Cas9 molecule disclosed herein;
  • a second gRNA that targets the MYOC gene e.g., a second gRNA disclosed herein, and
  • the method of treating a subject may further comprise contacting the subject (or a cell from the subject) with (d) a template nucleic acid, e.g., a template nucleic acid disclosed herein.
  • a template nucleic acid is used when the method of treating a subject uses HDR to alter the sequence of the target nucleic acid of the subject.
  • contacting comprises contacting with (a) and (b).
  • contacting comprises contacting with (a), (b), and (c)(i).
  • contacting comprises contacting with (a), (b), (c)(i) and (c)(ii). In some embodiments, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and
  • contacting comprises contacting with (a), (b), (c)(i) and (d). In some embodiments, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and
  • contacting comprises contacting with (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
  • the gRNA of (a) or (c) may be selected from any of 1A- 1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A- 20D, 21A-21D, 22A-22E, or 23A-23B, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12
  • the method comprises acquiring knowledge of the presence of a mutation at a POAG target position in said subject.
  • the method comprises acquiring knowledge of the presence of a mutation at a POAG target position in said subject by sequencing the MYOC gene or a portion of the MYOC gene.
  • the method comprises correcting a mutation at a POAG target position.
  • the method comprises correcting a mutation at a POAG target position by HDR.
  • the method comprises correcting a mutation at a POAG target position by NHEJ.
  • a Cas9 of (b) at least one guide RNA (e.g., a guide RNA of (a) and a template nucleic acid of (d) are included in the contacting step.
  • a cell of the subject is contacted ex vivo with (a), (b), (d) and optionally (c). In an embodiment, said cell is returned to the subject's body.
  • a cell of the subject is contacted is in vivo with (a), (b) (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by subretinal delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • a nucleic acid e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a), a nucleic acid of (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, a nucleic acid of (d) and optionally the second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA.
  • the contacting step comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA, a nucleic acid that encodes the Cas9 molecule of (b), and a nucleic acid of (d).
  • a Cas9 of (b) and at least one guide RNA are included in the contacting step.
  • a cell of the subject is contacted ex vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • said cell is returned to the subject's body.
  • a cell of the subject is contacted is in vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the cell of the subject is contacted in vivo by subretinal delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • a nucleic acid e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
  • the contacting step comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally the second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA.
  • the contacting step comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
  • reaction mixture comprising a gRNA molecule, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop POAG, or a subject having a mutation at a POAG target position
  • kits comprising, (a) a gRNA molecule described herein, or nucleic acid that encodes the gRNA, and one or more of the following:
  • a Cas9 molecule e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
  • a second gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
  • a third gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
  • a fourth gRNA molecule e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii);
  • a template nucleic acid e.g, a template nucleic acid described herein.
  • the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
  • nucleic acid e.g., an AAV vector
  • non-naturally occurring template nucleic acid described herein is non-naturally occurring template nucleic acid described herein.
  • a gRNA molecule e.g., a gRNA molecule described herein, for use in treating or preventing POAG in a subject, e.g., in accordance with a method of treating or preventing POAG as described herein.
  • the gRNA molecule in used in combination with a Cas9 molecule, e.g., a Cas9 molecule described herein. Additionally or alternatively, in an embodiment, the gRNA molecule is used in combination with a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
  • a gRNA molecule e.g., a gRNA molecule described herein
  • the medicament comprises a Cas9 molecule, e.g., a Cas9 molecule described herein.
  • the medicament comprises a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
  • the kit further comprises a governing gRNA molecule, or a nucleic acid that encodes a governing gRNA molecule.
  • the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject.
  • the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule.
  • the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule.
  • the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage.
  • the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region.
  • a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA.
  • altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
  • the gRNA molecules and methods, as disclosed herein, can be used in combination with a governing gRNA molecule.
  • the compositions and reaction mixtures, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
  • Headings including numeric and alphabetical headings and subheadings, are for organization and presentation and are not intended to be limiting.
  • Figs. 1A-1I are representations of several exemplary gRNAs.
  • Fig. 1A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes (S. pyogenes) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
  • Fig. IB depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
  • Fig. 1C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
  • Fig. ID depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
  • Fig. IE depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
  • Fig. IF depicts a modular gRNA molecule derived in part from Streptococcus thermophilus (S. thermophilus) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
  • Fig. 1G depicts an alignment of modular gRNA molecules of S. pyogenes and S. thermophilus (SEQ ID NOS: 50-53, respectively, in order of appearance).
  • Figs. 1H-1I depicts additional exemplary structures of unimolecular gRNA molecules.
  • Fig. 1H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45).
  • Fig. II shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
  • Figs. 2A-2G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737).
  • the N-terminal RuvC-like domain is boxed and indicated with a "Y”.
  • the other two RuvC-like domains are boxed and indicated with a "B”.
  • the HNH-like domain is boxed and indicated by a "G”.
  • Sm S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: 5". thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4).
  • Motif this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; "*" indicates any amino acid found in the corresponding position of any of the four sequences; and "-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • Figs. 3A-3B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance).
  • the last line of Fig. 3B identifies 4 highly conserved residues.
  • Figs. 4A-4B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104- 177, respectively, in order of appearance).
  • SEQ ID NOS: 104- 177 sequence outliers removed.
  • the last line of Fig. 4B identifies 3 highly conserved residues.
  • Figs. 5A-5C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance). The last line of Fig. 5C identifies conserved residues.
  • Figs. 6A-6B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance).
  • SEQ ID NOS: 253-302 sequence outliers removed.
  • the last line of Fig. 6B identifies 3 highly conserved residues.
  • Figs. 7A-7B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis (TV. meningitidis).
  • the N-terminal RuvC-like domain is boxed and indicated with a "Y”.
  • the other two RuvC-like domains are boxed and indicated with a "B”.
  • the HNH-like domain is boxed and indicated with a "G”.
  • Sp S. pyogenes
  • Nm N. meningitidis.
  • Motif this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; "*" indicates any amino acid found in the corresponding position of any of the two sequences; "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and "-” indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
  • Fig. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO:
  • sequence indicated by an "R” is an SV40 NLS
  • sequence indicated as “G” is an HA tag
  • sequence indicated by an “O” is a synthetic NLS sequence
  • FIGs. 9A and 9B are schematic representations of the domain organization of S.
  • Fig. 9A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes).
  • Fig. 9B shows the percent homology of each domain across 83 Cas9 orthologs.
  • Domain is used to describe segments of a protein or nucleic acid. Unless otherwise indicated, a domain is not required to have any specific functional property.
  • Calculations of homology or sequence identity between two sequences are performed as follows.
  • the sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes).
  • the optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5.
  • the amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared.
  • Governing gRNA molecule refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence.
  • a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the MYOC gene (a target gene gRNA); or on more than one nucleic acid that encodes a
  • a nucleic acid molecule that encodes a CRISPR/Cas component e.g., that encodes a Cas9 molecule or a target gene gRNA, comprises more than one target domain that is complementary with a governing gRNA targeting domain.
  • a governing gRNA molecule complexes with a Cas 9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component.
  • the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the MYOC gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a CRISPR/Cas system component, e.g., a Cas9 molecule or a target gene gRNA molecule.
  • a CRISPR/Cas system component e.g., a Cas9 molecule or a target gene gRNA molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule.
  • a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule.
  • the governing gRNA limits the effect of the Cas9 molecule/target gene gRNA molecule complex- mediated gene targeting.
  • a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex.
  • a governing gRNA reduces off-target or other unwanted activity.
  • a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
  • Modulator refers to an entity, e.g., a drug, that can alter the activity (e.g., enzymatic activity, transcriptional activity, or translational activity), amount, distribution, or structure of a subject molecule or genetic sequence.
  • modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non-covalent bond, e.g., the attachment of a moiety, to the subject molecule.
  • a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule.
  • a modulator can increase, decrease, initiate, or eliminate a subject activity.
  • Large molecule refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologies, and carbohydrates.
  • Polypeptide refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues.
  • Reference molecule e.g., a reference Cas9 molecule or reference gRNA, as used herein, refers to a molecule to which a subject molecule, e.g., a subject Cas9 molecule of subject gRNA molecule, e.g., a modified or candidate Cas9 molecule is compared.
  • a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule.
  • reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. aureus or S. thermophilus.
  • the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared.
  • the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
  • Small molecule refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD.
  • Subject may mean either a human or non-human animal.
  • the term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats).
  • mammals e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats).
  • the subject is a human. In other embodiments, the subject is poultry.
  • Treatment mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
  • Prevent means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
  • POAG Primary Open Angel Glaucoma
  • Glaucoma is the second leading cause of blindness in the world.
  • Primary Open Angle Glaucoma POAG is the leading cause of glaucoma and affects approximately 1% of patients ages 40-89.
  • POAG develops due to an imbalance between the production and outflow of aqueous humor within the eye.
  • Aqueous humor (AH) is produced by the ciliary body located in the posterior chamber.
  • the vast majority (approximately 80%) of AH drains through the trabecular meshwork (TM) to the episcleral venous system.
  • a minority (approximately 20%) of AH drains through the interstitium between the iris root and ciliary muscle (Feisal 2005).
  • POAG is likely due to decreased drainage through the trabecular meshwork; decreased outflow of AH results in increased intraocular pressure (IOP) and IOP causes damage to the optic nerve and leads to progressive blindness.
  • IOP intraocular pressure
  • the MYOC gene also called the trabecular meshwork-induced glucocorticoid receptor (TIGR), encodes myocilin, a 504 amino acid protein encoded by 3 exons. Myocilin is found in the trabecular meshwork and plays a role in cytoskeletal function and in the regulation of IOP.
  • TIGR trabecular meshwork-induced glucocorticoid receptor
  • a therapy e.g., a one-time therapy, or a multi-dose therapy, that prevents or treats primary open-angle glaucoma (POAG).
  • a disclosed therapy prevents, inhibits, or reduces the production of mutant myocilin protein in cells of the anterior and posterior chamber of the eye in a subject who has POAG.
  • a rod photoreceptor cell e.g., a cone photoreceptor cell
  • a retinal pigment epithelium cell e.g., a horizontal cell, e.g., an amacrine cell, e.g., a ganglion cell
  • a rod photoreceptor cell e.g., a cone photoreceptor cell
  • a retinal pigment epithelium cell e.g., a horizontal cell, e.g., an amacrine cell, e.g., a ganglion cell
  • a rod photoreceptor cell e.g., a cone photoreceptor cell
  • a retinal pigment epithelium cell e.g., a horizontal cell, e.g., an amacrine cell, e.g., a ganglion cell
  • Corrected cells will not undergo apoptosis, will not cause inflammation and will produce wild-type, non- aggregating myocilin.
  • the disease is cured, does not progress or has delayed progression compared to a subject who has not received the therapy.
  • Myocilin is expressed in the eye, primarily by trabecular meshwork cells and the ciliary body. It is also expressed in the retina. Research indicates that MYOC mutations exert a toxic gain of function effect within trabecular meshwork cells. Mutant myocilin, especially mutants with missense or nonsense mutations in exon 3, e.g., a mutation at T377 (e.g., T377R), a mutation at 1477 (e.g., I477N), or a mutation at P370 (e.g., P370L), may misfold and aggregate in the endoplasmic reticulum (ER). Misfolding and aggregation within the ER elicits the ER stress and unfold protein response, which can lead to apoptosis and
  • mutant myocilin protein may aggregate in the trabecular meshwork with other mutant proteins and/or with wild-type myocilin (in heterozygotes). Mutant myocilin aggregates may interfere with the outflow of aqueous humor to the episcleral venous system. Decreased aqueous humor outflow causes increased intraocular pressure, leading to POAG.
  • mutant myocilin production in subjects with a mutation e.g., a mutation at T377 (e.g., T377R), a mutation at 1477 (e.g., I477N), or a mutation at P370 (e.g., P370L) mutations or other mutant MYOC alleles through knock out of MYOC on ciliary body cells, iris cells, trabecular meshwork cells and retinal cells will prevent the production of the myocilin proteins. Corrected cells will not undergo apoptosis and will not increase inflammation.
  • POAG does not progress or has delayed progression compared to a subject who has not received the therapy.
  • Described herein are methods for treating or delaying the onset or progression of POAG caused by mutations in the MYOC gene, including but not limited to mutations in exon 3, e.g., a mutation at T377 (e.g.,T377R), a mutation at 1477 (e.g., I477N), or a mutation at P370 (e.g., P370L).
  • the disclosed methods for treating or delaying the onset or progression of POAG alter the MYOC gene by genome editing using a gRNA targeting the POAG target position and a Cas9 enzyme. Details on gRNAs targeting the POAG target position and Cas9 enzymes are provided below.
  • Current treatments to prevent the progression of POAG include treatments that reduce IOP.
  • trabeculectomy surgery and eye drops including alpha-adregergic antagonists and beta-adrenergic antagonists, are both effective in preventing POAG progression.
  • further treatments are needed to reduce IOP and prevent progression of POAG.
  • methods that correct the underlying mutations that lead to POAG.
  • methods that knockdown or knockout a MYOC gene include targeting one or both alleles of the MYOC gene.
  • the disclosed methods may be useful to permanently decrease IOP and prevent the progressive visual loss of POAG. Further, the disclosed methods are more convenient than taking daily eye drops or having surgery.
  • one approach is to repair (i.e., correct) one or more mutations in the MYOC gene by HDR.
  • mutant MYOC allele(s) are corrected and restored to wild type state, which preserves myocilin function, restores homeostasis within the TM and preserves IOP, which reverses or prevents progression of POAG.
  • the MYOC gene is targeted as a targeted knockout or knockdown.
  • a knockout or knockdown of the MYOC gene may offer a benefit to subjects with POAG who have a mutation in the MYOC gene as well as subjects with POAG without a known MYOC mutation.
  • MYOC mutations are gain of function mutations leading to altered TM function and the development of IOP.
  • patients with heterozygous early truncating mutations (Arg46stop) do not develop disease.
  • MYOC knock-out mice do not develop POAG and have no detected eye abnormalities. Further, a few patients have been identified who express no myocilin in the eye and have no phenotype. Without wishing to be bound by theory, it is contemplated herein that a knock out or knock down of MYOC gene in the eye prevents the development of POAG.
  • treatment is initiated prior to onset of the disease.
  • treatment is initiated after onset of the disease, but early in the course of disease progression (e.g., prior to vision loss, a decrease in visual acuity and/or an increase in IOP).
  • treatment is initiated after onset of the disease, but prior to a measurable increase in IOP.
  • treatment is initiated prior to loss of visual acuity.
  • treatment is initiated at onset of loss of visual acuity.
  • treatment is initiated after onset of loss of visual acuity.
  • treatment is initiated in a subject who has tested positive for a mutation in the MYOC gene, e.g., prior to disease onset or in the earliest stages of disease.
  • a subject has a family member that has been diagnosed with
  • the subject has a family member that has been diagnosed with POAG, and the subject demonstrates a symptom or sign of the disease or has been found to have a mutation in the MYOC gene.
  • treatment is initiated in a subject who has no MYOC mutation but has increased intraocular pressure.
  • treatment is initiated in a subject at onset of an increase in intraocular pressure.
  • treatment is initiated in a subject after onset of an increase in intraocular pressure.
  • treatment is initiated in a subject with signs consistent with POAG on ophthalmologic exam, including but not limited to: increased intraocular pressure; cupping of the optic nerve on slit lamp exam, stereobiomicroscopy or ophthalmoscopy; pallor of the optic disk; thinning or notching of the optic disk rim; hemorrhages of the optic disc; vertical cup-to-disk ratio of >0.6 or cup-to-disk asymmetry between eyes of greater than 0.2;
  • a subject's vision can evaluated, e.g., prior to treatment, or after treatment, e.g., to monitor the progress of the treatment.
  • the subject's vision is evaluated prior to treatment, e.g., to determine the need for treatment.
  • the subject's vision is evaluated after treatment has been initiated, e.g., to access the effectiveness of the treatment.
  • Vision can be evaluated by one or more of: evaluation of increased IOP;
  • evaluating changes in function relative to the contralateral eye e.g., by utilizing retinal analytical techniques; by evaluating mean, median and distribution of change in best corrected visual acuity (BCVA); evaluation by Optical Coherence Tomography; evaluation of changes in visual field using perimetry; evaluation by full-field electroretinography (ERG); evaluation by slit lamp examination; evaluation of intraocular pressure; evaluation of autofluorescence, evaluation with fundoscopy; evaluation with fundus photography;
  • FA fluorescein angiography
  • FFST visual field sensitivity
  • a subject's vision may be assessed by measuring the subject's mobility, e.g., the subject's ability to maneuver in space.
  • a POAG target position e.g., MYOC gene
  • a POAG target position can be altered by gene editing, e.g., using CRISPR-Cas9 mediated methods as described herein.
  • An alteration of the MYOC gene can be mediated by any mechanism.
  • Exemplary mechanisms that can be associated with an alteration of the MYOC gene include, but are not limited to, non-homologous end joining (e.g., classical or alternative), microhomology- mediated end joining (MMEJ), homology-directed repair (e.g., endogenous donor template mediated), SDSA (synthesis dependent strand annealing), single strand annealing or single strand invasion.
  • altering the POAG target position is achieved, e.g., by:
  • a POAG target position e.g., a point mutation
  • the MYOC gene e.g., HDR- mediated correction with a donor template that corrects the mutation, e.g., the point mutation
  • insertion or deletion e.g., NHEJ-mediated insertion or deletion
  • insertion or deletion e.g., NHEJ-mediated insertion or deletion
  • deletion e.g., NHEJ-mediated deletion of genomic sequence including a
  • methods described herein introduce one or more breaks near a POAG target position in at least one allele of the MYOC gene.
  • methods described herein introduce two or more breaks to flank a POAG target position, e.g., POAG knockout target position or a point mutation in the MYOC gene. The two or more breaks remove (e.g., delete) genomic sequence including the POAG target position, e.g., POAG knockout target position or point mutation in the MYOC gene.
  • methods described herein comprises knocking down the MYOC gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of a POAG
  • the methods and compositions described herein introduce one or more breaks near a POAG target position, e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region in the MYOC gene.
  • Q368 e.g., Q368stop
  • P370 e.g., P370L
  • T377 e.g., T377R
  • 1477 e.g., I477N or I477S
  • 477-502 mutation hotspot region in the MYOC gene e.g., I477N or I477S
  • a mutation e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region the substitution T377R), or 1477 (e.g., the substitution I477N or I477S) is targeted by cleaving with either one or more nucleases, one or more nickases or any combination thereof to induce HDR with a donor template that corrects the point mutation (e.g., the single nucleotide, e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477- 502 mutation hotspot region.
  • the method can include acquiring knowledge of the mutation carried
  • guide RNAs were designed to target a mutation (e.g., Q368 (e.g., Q368 (e.g., Q368 (e.g.
  • P370 e.g., P370L
  • T377 e.g., T377R
  • 1477 e.g., I477N or I477S
  • 477- 502 mutation hotspot region in the MYOC gene.
  • a single gRNA with a Cas9 nuclease or a Cas9 nickase could be used to generate a break (e.g., a single strand break or a double strand break) in close proximity to a mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region).
  • a mutation e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region).
  • HDR-mediated repair e.g., with a donor template
  • the break e.g., a single strand break or a double strand break
  • the mutation e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region
  • the mutation e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region
  • two gRNAs with two Cas9 nickases could be used to generate two single strand breaks in close proximity to a mutation (e.g., Q368 (e.g.,
  • more than two gRNAs may be used in a dual-targeting approach to generate two sets of breaks (e.g., two double strand breaks, one double strand break and a pair of single strand breaks or two pairs of single strand breaks) in close proximity to a mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region)or delete a genomic sequence containing a mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region)in the MYOC gene.
  • a mutation e.g., Q368 (e.g
  • HDR-mediated repair e.g., with a donor template
  • the breaks e.g., two double strand breaks, one double strand break and a pair of single strand breaks or two pairs of single strand breaks
  • the mutation e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region
  • the mutation e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region
  • a single strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene.
  • a single gRNA molecule e.g., with a Cas9 nickase
  • the gRNA is configured such that the single strand break is positioned either upstream (e.g., within 200 bp upstream) or downstream (e.g., within 200 bp downstream) of the POAG target position.
  • the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • a double strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene.
  • a single gRNA molecule e.g., with a Cas9 nuclease other than a Cas9 nickase
  • the gRNA molecule is configured such that the double strand break is positioned either upstream (e.g., within 200 bp upstream) or downstream of (e.g., within 200 bp downstream) of a POAG target position.
  • the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • two single strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene.
  • two gRNA molecules e.g., with one or two Cas9 nickcases
  • the gRNAs molecules are configured such that both of the single strand breaks are positioned upstream (e.g., within 200 bp upstream) or downstream (e.g., within 200 bp downstream) of the POAG target position.
  • two gRNA molecules are used to create two single strand breaks at or in close proximity to the POAG target position, e.g., the gRNAs molecules are configured such that one single strand break is positioned upstream (e.g., within 200 bp upstream) and a second single strand break is positioned downstream (e.g., within 200 bp downstream) of the POAG target position.
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • two double strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene.
  • two gRNA molecules e.g., with one or two Cas9 nucleases that are not Cas9 nickases
  • the gRNA molecules are configured such that one double strand break is positioned upstream (e.g., within 200 bp upstream) and a second double strand break is positioned downstream (e.g., within 200 bp downstream) of the POAG target position.
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • one double strand break and two single strand breaks are introduced (e.g., positioned by three gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene.
  • three gRNA molecules e.g., with a Cas9 nuclease other than a Cas9 nickase and one or two Cas9 nickases
  • the gRNA molecules are configured such that the double strand break is positioned upstream or downstream of (e.g., within 200 bp upstream or downstream) of the POAG target position, and the two single strand breaks are positioned at the opposite site, e.g., downstream or upstream (within 200 bp downstream or upstream), of the POAG target position.
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • four single strand breaks are introduced (e.g., positioned by four gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene.
  • four gRNA molecule e.g., with one or more Cas9 nickases are used to create four single strand breaks to flank a POAG target position in the MYOC gene, e.g., the gRNA molecules are configured such that a first and second single strand breaks are positioned upstream (e.g., within 200 bp upstream) of the POAG target position, and a third and a fourth single stranded breaks are positioned downstream (e.g., within 200 bp downstream) of the POAG target position.
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • two or more (e.g., three or four) gRNA molecules are used with one Cas9 molecule.
  • at least one Cas9 molecule is from a different species than the other Cas9 molecule(s).
  • one Cas9 molecule can be from one species and the other Cas9 molecule can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
  • the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the POAG target knockout position (e.g., the early coding region) of the MYOC gene.
  • the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the early coding region of the POAG knockout target position, such that the break-induced indel could be reasonably expected to span the POAG target knockout position (e.g., the early coding region).
  • the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the MYOC gene to allow alteration, e.g., alteration associated with NHEJ in the MYOC gene.
  • the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a POAG target knockout position.
  • the break e.g., a double strand or single strand break, can be positioned upstream or downstream of a POAG target knockout position in the MYOC gene.
  • a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the MYOC gene, to allow alteration, e.g., alteration associated with NHEJ in the MYOC gene, either alone or in combination with the break positioned by said first gRNA molecule.
  • a cleavage event e.g., a double strand break or a single strand break
  • the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • the breaks e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a POAG target knockout position in the MYOC gene.
  • the breaks e.g., double strand or single strand breaks
  • the breaks are positioned on one side, e.g., upstream or downstream, of a nucleotide of a POAG target knockout position in the MYOC gene.
  • a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below.
  • the targeting domains are configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the MYOC gene.
  • the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the MYOC gene.
  • the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 molecule is a nickase.
  • the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
  • a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule.
  • the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
  • a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule.
  • the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the MYOC gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleot
  • a single strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene.
  • a single gRNA molecule e.g., with a Cas9 nickase
  • the gRNA is configured such that the single strand break is positioned either upstream (e.g., within 500 bp upstream) or downstream (e.g., within 500 bp downstream) of the POAG target position.
  • the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • a double strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene.
  • a single gRNA molecule e.g., with a Cas9 nuclease other than a Cas9 nickase
  • the gRNA molecule is configured such that the double strand break is positioned either upstream (e.g., within 500 bp upstream) or downstream of (e.g., within 500 bp downstream) of a POAG target position.
  • the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • two single strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene.
  • two gRNA molecules e.g., with one or two Cas9 nickcases
  • the gRNAs molecules are configured such that both of the single strand breaks are positioned upstream (e.g., within 500 bp upstream) or downstream (e.g., within 500 bp downstream) of the POAG target position.
  • two gRNA molecules are used to create two single strand breaks at or in close proximity to the POAG target position, e.g., the gRNAs molecules are configured such that one single strand break is positioned upstream (e.g., within 500 bp upstream) and a second single strand break is positioned downstream (e.g., within 500 bp downstream) of the POAG target position.
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • two double strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene.
  • two gRNA molecules e.g., with one or two Cas9 nucleases that are not Cas9 nickases
  • the gRNA molecules are configured such that one double strand break is positioned upstream (e.g., within 500 bp upstream) and a second double strand break is positioned downstream (e.g., within 500 bp downstream) of the POAG target position.
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • one double strand break and two single strand breaks are introduced (e.g., positioned by three gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene.
  • three gRNA molecules e.g., with a Cas9 nuclease other than a Cas9 nickase and one or two Cas9 nickases
  • the gRNA molecules are configured such that the double strand break is positioned upstream or downstream of (e.g., within 500 bp upstream or downstream) of the POAG target position, and the two single strand breaks are positioned at the opposite site, e.g., downstream or upstream (within 500 bp downstream or upstream), of the POAG target position.
  • the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
  • eiCas9 enzymatically inactive Cas9
  • a targeted knockdown approach reduces or eliminates expression of functional MYOC gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the MYOC gene.
  • eiCas9 enzymatically inactive Cas9
  • Methods and compositions discussed herein may be used to alter the expression of the MYOC gene to treat or prevent POAG by targeting a promoter region of the MYOC gene.
  • the promoter region e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the transcription start site (TSS) is targeted to knockdown expression of the MYOC gene.
  • TSS transcription start site
  • the methods and compositions discussed herein may be used to knock down the MYOC gene to treat or prevent BT by targeting 0.5 kb upstream or downstream of the TSS.
  • a targeted knockdown approach reduces or eliminates expression of functional MYOC gene product.
  • a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the MYOC gene.
  • eiCas9 molecules may be used to block binding of one or more endogenous transcription factors.
  • an eiCas9 molecule can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene.
  • One or more eiCas9 molecules fused to one or more chromatin modifying proteins may be used to alter chromatin status
  • T377 mutant protein e.g., T377R mutant protein
  • 1477 mutant protein e.g., I477N mutant protein, e.g., I477S mutant protein
  • P370 mutant protein e.g., P370L mutant protein
  • the methods and compositions herein are broadly applicable to any mutation, e.g., a point mutation or a nonsense mutation or a deletion mutation, in the MYOC gene that gives rise to POAG.
  • a gRNA molecule refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid.
  • gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as "chimeric" gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules).
  • a gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
  • Figs. 1A-1G Several exemplary gRNA structures, with domains indicated thereon, are provided in Figs. 1A-1G. While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter-strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in Figs. 1A-1G and other depictions provided herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5' to 3' :
  • a targeting domain (which is complementary to a target nucleic acid in the MYOC gene, e.g., a targeting domain from any of 1A-1E, 2A-2E, 3A-3E, 4A-
  • a tail domain optionally, a tail domain.
  • a modular gRNA comprises:
  • a first strand comprising, preferably from 5' to 3' ;
  • a targeting domain (which is complementary to a target nucleic acid in the MYOC gene, e.g., a targeting domain from 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A- 6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B); and a first complementarity domain; and
  • a second strand comprising, preferably from 5 ' to 3 ' :
  • a tail domain optionally, a tail domain.
  • Figs. 1A-1G provide examples of the placement of targeting domains.
  • the targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid.
  • the targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid.
  • the uracil bases in the targeting domain will pair with the adenine bases in the target sequence.
  • the target domain itself comprises in the 5' to 3' direction, an optional secondary domain, and a core domain.
  • the core domain is fully complementary with the target sequence.
  • the targeting domain is 5 to 50 nucleotides in length.
  • the strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand.
  • Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • Figs. 1A-1G provide examples of first complementarity domains.
  • the first complementarity domain is complementary with the second
  • the complementarity domain has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions.
  • the first complementarity domain is 5 to 30 nucleotides in length. In an embodiment, the first complementarity domain is 5 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 22 nucleotides in length. In an embodiment, the first complementary domain is 7 to 18 nucleotides in length. In an embodiment, the first complementary domain is 7 to 15 nucleotides in length. In an embodiment, the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain.
  • the 5' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length.
  • the 3' subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of linking domains.
  • a linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA.
  • the linking domain can link the first and second complementarity domains covalently or non-covalently.
  • the linkage is covalent.
  • the linking domain covalently couples the first and second complementarity domains, see, e.g., Figs. IB-IE.
  • the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain.
  • the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
  • linking domains are suitable for use in unimolecular gRNA molecules.
  • Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length.
  • a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length.
  • a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length.
  • a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5' to the second complementarity domain.
  • the linking domain has at least 50% homology with a linking domain disclosed herein.
  • nucleotides of the domain can have a modification, e.g., modification found in Section VIII herein.
  • a modular gRNA can comprise additional sequence, 5' to the second complementarity domain, referred to herein as the 5' extension domain, see, e.g., Fig. 1A.
  • the 5' extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length.
  • the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • Figs. 1A-1G provide examples of second complementarity domains.
  • the second complementarity domain is complementary with the first
  • the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
  • the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24 or 25 nucleotides in length.
  • the second complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain.
  • the 5' subdomain is 3 to 25, e.g., 4 to 22, 4 tol8, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
  • the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length.
  • the 3' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
  • complementarity domain are respectively, complementary, e.g., fully complementary, with the 3' subdomain and the 5' subdomain of the second complementarity domain.
  • the second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of proximal domains.
  • the proximal domain is 5 to 20 nucleotides in length.
  • the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain.
  • nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
  • Figs. 1A-1G provide examples of tail domains.
  • the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length.
  • the tail domain nucleotides are from or share homology with sequence from the 5 ' end of a naturally occurring tail domain, see e.g., Fig. ID or Fig. IE.
  • the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
  • the tail domain is absent or is 1 to 50 nucleotides in length.
  • the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain.
  • the tail domain includes nucleotides at the 3' end that are related to the method of in vitro or in vivo transcription.
  • these nucleotides may be any nucleotides present before the 3 ' end of the DNA template.
  • U6 promoter is used for in vivo transcription
  • these nucleotides may be the sequence UUUUUU.
  • alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
  • gRNA molecules The domains of gRNA molecules are described in more detail below.
  • the "targeting domain" of the gRNA is complementary to the "target domain” on the target nucleic acid.
  • the strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the "complementary strand" of the target nucleic acid.
  • Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg SH et al., Nature 2014 (doi: 10.1038/naturel3011).
  • the targeting domain is 16, 17, 18, 19, 20, 21, 22
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain is 17 nucleotides in length.
  • the targeting domain is 18 nucleotides in length.
  • the targeting domain is 19 nucleotides in length.
  • the targeting domain is 20 nucleotides in length.
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain is 22 nucleotides in length.
  • the targeting domain is 23 nucleotides in length.
  • the targeting domain is 24 nucleotides in length.
  • the targeting domain is 25 nucleotides in length. In an embodiment, the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises 16 nucleotides.
  • the targeting domain comprises 17 nucleotides.
  • the targeting domain comprises 18 nucleotides.
  • the targeting domain comprises 19 nucleotides.
  • the targeting domain comprises 20 nucleotides.
  • the targeting domain comprises 21 nucleotides.
  • the targeting domain comprises 22 nucleotides.
  • the targeting domain comprises 23 nucleotides.
  • the targeting domain comprises 24 nucleotides.
  • the targeting domain comprises 25 nucleotides.
  • the targeting domain comprises 26 nucleotides.
  • the targeting domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5,
  • the targeting domain is 20+/-5 nucleotides in length.
  • the targeting domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/-10, 80+/-10, 90+/-10, or 100+/- 10 nucleotides, in length.
  • the targeting domain is 30+/- 10 nucleotides in length.
  • the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length. In another embodiment, the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the targeting domain has full complementarity with the target sequence.
  • the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
  • the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3 ' end.
  • the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3 ' end.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain ("non-complementary nucleotides”), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5 ' end of the targeting domain, within 5 nucleotides of the 3 ' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • non-complementary nucleotides two consecutive nucleotides that are within 5 nucleotides of the 5 ' end of the targeting domain, within 5 nucleotides of the 3 ' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
  • no two consecutive nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3 ' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
  • the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the targeting domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the targeting domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the targeting domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3 ' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5 ' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
  • Modifications in the targeting domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in a system in Section IV.
  • the candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain.
  • 1 , 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
  • the targeting domain comprises, preferably in the 5' ⁇ 3' direction: a secondary domain and a core domain. These domains are discussed in more detail below.
  • the “core domain” of the targeting domain is complementary to the "core domain target" on the target nucleic acid.
  • the core domain comprises about 8 to about 13 nucleotides from the 3 ' end of the targeting domain (e.g., the most 3' 8 to 13 nucleotides of the targeting domain).
  • the core domain and targeting domain are independently, 6 +1-2,
  • the core domain and targeting domain are independently, 10+/-2 nucleotides in length.
  • the core domain and targeting domain are independently, 10+/-4 nucleotides in length. In an embodiment, the core domain and targeting domain are independently 6, 7, 8, 9,
  • the core domain and targeting domain are independently 3 to 20, 4 to 20, 5 to 20, 6 to 20, 7 to 20, 8 to 20, 9 to 20 10 to 20 or 15 to 20 nucleotides in length.
  • the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to
  • the core domain is complementary with the core domain target.
  • the core domain has exact complementarity with the core domain target.
  • the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain.
  • complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the "secondary domain" of the targeting domain of the gRNA is complementary to the "secondary domain target" of the target nucleic acid.
  • the secondary domain is positioned 5 ' to the core domain.
  • the secondary domain is absent or optional.
  • the targeting domain is 26 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 25 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 12 to 17 nucleotides in length.
  • the targeting domain is 24 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 11 to 16 nucleotides in length.
  • the targeting domain is 23 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 10 to 15 nucleotides in length.
  • the secondary domain is 9 to 14 nucleotides in length. In an embodiment, if the targeting domain is 21 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 8 to 13 nucleotides in length.
  • the targeting domain is 20 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 7 to 12 nucleotides in length.
  • the targeting domain is 19 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 6 to 11 nucleotides in length.
  • the targeting domain is 18 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 5 to 10 nucleotides in length.
  • the targeting domain is 17 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 4 to 9 nucleotides in length.
  • the targeting domain is 16 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length
  • the secondary domain is 3 to 8 nucleotides in length.
  • the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 nucleotides in length.
  • the secondary domain is complementary with the secondary domain target.
  • the secondary domain has exact complementarity with the secondary domain target.
  • the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the secondary domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the core domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the core domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a core domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the core domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the secondary domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • a secondary domain will contain no more than 1, 2, or 3 modifications.
  • Modifications in the secondary domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
  • (1) the number of modifications (e.g., modifications from Section VIII) of the nucleotides of the core domain and (2) the number of modification (e.g., modifications from Section VIII) of the nucleotides of the secondary domain may differ. In an embodiment, (1) may be less than (2). In an embodiment, (1) may be greater than (2). In an embodiment, (1) and (2) may be the same, e.g., each may be free of modifications.
  • the first complementarity domain is complementary with the second
  • the first domain does not have exact complementarity with the second complementarity domain target.
  • the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain.
  • 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region.
  • an unpaired, or loop-out, region e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain.
  • the unpaired region begins 1 , 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5 ' end of the second complementarity domain.
  • the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
  • the first and second complementarity domains are:
  • the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
  • the first and second complementary domains independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the first and second complementary domains independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other
  • the first and second complementary domains independently, include 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the first and second complementary domains, independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the first and second complementary domains, independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the first and second complementary domains independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5 ' end of the domain, within 5 nucleotides of the 3 ' end of the domain, or more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • the first and second complementary domains independently, include no nucleotide that is modified within 5 nucleotides of the 5 ' end of the domain, within 5 nucleotides of the 3 ' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
  • Modifications in a complementarity domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA
  • the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain, or a first complementarity domain described herein, e.g., from Figs. 1A-1G.
  • a reference first complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • first complementarity domain e.g., from Figs. 1A-1G.
  • the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, second complementarity domain, or a second complementarity domain described herein, e.g., from Figs. 1A-1G.
  • a reference second complementarity domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • second complementarity domain e.g., from Figs. 1A-1G.
  • the duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
  • the first and second complementarity domains when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
  • the first and second complementarity domains when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • the first and second complementarity domains when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • the first and second complementarity domains when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
  • nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
  • a modular gRNA can comprise additional sequence, 5' to the second complementarity domain.
  • the 5' extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length.
  • the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
  • the 5 ' extension domain nucleotides do not comprise
  • the 5' extension domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the 5' extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the 5' extension domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the 5' extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
  • the 5 ' extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
  • no nucleotide is modified within 5 nucleotides of the 5 ' end of the 5 ' extension domain, within 5 nucleotides of the 3 ' end of the 5 ' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
  • Modifications in the 5 ' extension domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate 5 ' extension domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate 5 ' extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the 5' extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5' extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S.
  • a reference 5' extension domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S.
  • thermophilus 5' extension domain, or a 5' extension domain described herein, e.g., from Figs. 1A-1G.
  • the linking domain is disposed between the first and second complementarity domains.
  • the two molecules are associated with one another by the complementarity domains.
  • the linking domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5,
  • the linking domain is 20+/-10, 30+/-10, 40+/-10, 50+/-10, 60+/- 10, 70+/-10, 80+/-10, 90+/-10, or 100+/- 10 nucleotides, in length.
  • the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length. In other embodiments, the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 17, 18, 19, or 20 nucleotides in length.
  • the linking domain is a covalent bond.
  • the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3' end of the first complementarity domain and/or the 5- end of the second complementarity domain.
  • the duplexed region can be 20+/- 10 base pairs in length.
  • the duplexed region can be 10+/-5, 15+/-5, 20+/-5, or 30+/-5 base pairs in length.
  • the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, or 15 base pairs in length.
  • sequences forming the duplexed region have exact complementarity with one another, though in some embodiments as many as 1 , 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
  • the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the linking domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the linking domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the linking domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the linking domain can comprise as many as 1 , 2, 3, 4, 5, 6, 7 or 8 modifications.
  • Modifications in a linking domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated a system described in Section IV.
  • a candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the linking domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 , or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from Figs. 1A-1G.
  • the proximal domain is 6 +1-2, ⁇ + ⁇ -2, 8+/-2, 9+/-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 14+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2 nucleotides in length.
  • the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length.
  • the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the proximal domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the proximal domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the proximal domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
  • the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
  • the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3 ' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • no nucleotide is modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3 ' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
  • Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described at Section IV.
  • the candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 , or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain, or a proximal domain described herein, e.g., from Figs. 1A- 1G.
  • a reference proximal domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • proximal domain e.g., from Figs. 1A- 1G.
  • the tail domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5,
  • the tail domain is 20+/-5 nucleotides in length.
  • the tail domain is 20+/-10, 30+/-10, 40+/-10, 50+/-10, 60+/-10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
  • the tail domain is 25+/- 10 nucleotides in length.
  • the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
  • the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
  • the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length.
  • the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII.
  • the tail domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic.
  • the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from Section VIII.
  • a nucleotide of the tail domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other
  • the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications.
  • the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
  • the tail domain comprises a tail duplex domain, which can form a tail duplexed region.
  • the tail duplexed region can be 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 base pairs in length.
  • a further single stranded domain exists 3' to the tail duplexed domain.
  • this domain is 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In an embodiment it is 4 to 6 nucleotides in length.
  • the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain, or a tail domain described herein, e.g., from Figs. 1A-1G.
  • a reference tail domain e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus
  • tail domain or a tail domain described herein, e.g., from Figs. 1A-1G.
  • proximal and tail domain taken together, comprise the following sequences:
  • AAGGCUAGUCCGUUAUCA (SEQ ID NO: 37), or
  • the tail domain comprises the 3' sequence UUUUUU, e.g., if a U6 promoter is used for transcription.
  • the tail domain comprises the 3' sequence UUUU, e.g., if an HI promoter is used for transcription.
  • tail domain comprises variable numbers of 3' Us depending, e.g., on the termination signal of the pol-III promoter used.
  • the tail domain comprises variable 3 ' sequence derived from the DNA template if a T7 promoter is used.
  • the tail domain comprises variable 3 ' sequence derived from the
  • DNA template e.g., if in vitro transcription is used to generate the RNA molecule.
  • the tail domain comprises variable 3 ' sequence derived from the DNA template, e.g., if a pol-II promoter is used to drive transcription.
  • Modifications in the tail domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV.
  • gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification can be evaluated in the system described in Section IV.
  • the candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
  • the tail domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • no nucleotide is modified within 5 nucleotides of the 5 ' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
  • the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
  • the first complementarity domain is 5 to 25 nucleotides in length and, In an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference first complementarity domain disclosed herein;
  • the linking domain is 1 to 5 nucleotides in length
  • the second complementarity domain is 5 to 27 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference second complementarity domain disclosed herein;
  • the proximal domain is 5 to 20 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference proximal domain disclosed herein;
  • the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
  • a unimolecular, or chimeric, gRNA comprises, preferably from 5' to 3':
  • a targeting domain (which is complementary to a target nucleic acid);
  • a first complementarity domain e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22,
  • a linking domain a linking domain; a second complementarity domain (which is complementary to the first complementarity domain);
  • proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
  • the sequence from (a), (b), or (c) has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 21 nucleotides
  • the targeting domain is 21 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 26 nucleotides
  • the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • 18 nucleotides e.g., 18 consecutive nucleotides having complementarity with the target domain
  • the targeting domain is 18 nucleotides in length
  • the targeting domain comprises, has, or consists of, 19 nucleotides
  • the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 20 nucleotides
  • the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 21 nucleotides
  • the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 21 nucleotides
  • the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 22 nucleotides
  • the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 22 nucleotides
  • the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number:
  • the unimolecular, or chimeric, gRNA molecule is a S. pyogenes gRNA molecule.
  • the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number:
  • the unimolecular, or chimeric, gRNA molecule is a S. aureus gRNA molecule.
  • a modular gRNA comprises:
  • a first strand comprising, preferably from 5' to 3' ;
  • a targeting domain e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26 nucleotides;
  • a second strand comprising, preferably from 5 ' to 3 ' :
  • proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
  • the sequence from (a), (b), or (c) has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
  • proximal and tail domain when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides
  • the targeting domain is 16 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 21 nucleotides
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 25 nucleotides
  • the targeting domain is 25 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
  • the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 16 nucleotides
  • the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 16 nucleotides
  • the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
  • the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
  • the targeting domain comprises, has, or consists of, 22 nucleotides
  • the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 23 nucleotides
  • the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 24 nucleotides
  • the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 24 nucleotides
  • the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 25 nucleotides
  • the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 25 nucleotides
  • the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
  • the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
  • Methods for designing gRNAs are described herein, including methods for selecting, designing and validating target domains. Exemplary targeting domains are also provided herein. Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
  • BIOTECHNOL 31(9): 827-32; Fu et al., 2014 NAT BIOTECHNOL, doi: 10.1038/nbt.2808.
  • a software tool can be used to optimize the choice of gRNA within a user's target sequence, e.g., to minimize total off-target activity across the genome. Off target activity may be other than cleavage.
  • the tool can identify all off-target sequences (preceding either NAG or NGG PAMs) across the genome that contain up to certain number (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10) of mismatched base-pairs.
  • the cleavage efficiency at each off-target sequence can be predicted, e.g., using an experimentally-derived weighting scheme.
  • Each possible gRNA is then ranked according to its total predicted off-target cleavage; the top-ranked gRNAs represent those that are likely to have the greatest on-target and the least off-target cleavage.
  • Other functions e.g., automated reagent design for CRISPR construction, primer design for the on-target Surveyor assay, and primer design for high-throughput detection and quantification of off- target cleavage via next-gen sequencing, can also be included in the tool.
  • Candidate gRNA molecules can be evaluated by art-known methods or as described in Section IV herein.
  • Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
  • Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
  • the gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
  • gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
  • gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
  • gRNAs for use with the N. meningitidis (Tables 4E) and S. aureus (Tables 4D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
  • gRNAs Guide RNAs
  • S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm.
  • Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181).
  • Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity.
  • matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24.
  • an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface.
  • the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
  • RepeatMasker program RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
  • gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM).
  • Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence.
  • a "high level of orthogonality" or "good orthogonality” may, for example, refer to
  • Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
  • S. pyogenes and N. meningitidis targets 17-mer, or 20-mer gRNAs were designed.
  • S. aureus targets 18-mer, 19-mer, 20-mer,
  • Tarteting domains may comprise the 17-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E.
  • Tarteting domains, disclosed herein may comprises the 18-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E.
  • Tarteting domains may comprises the 19-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E.
  • Tarteting domains, disclosed herein may comprises the 20-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 21 or more nucleotides may comprise the 20- mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E.
  • Tarteting domains may comprises the 21-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E.
  • Tarteting domains, disclosed herein may comprises the
  • the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 6A-6E, 7A-7G or
  • Tarteting domains may comprises the 23-mer described in Tables 6A-6E, 7A-7G or 8A-8E,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E.
  • Tarteting domains, disclosed herein may comprises the 24-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E.
  • gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two considerations:
  • gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
  • the targeting domains discussed herein can be incorporated into the gRNAs described herein.
  • gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 6A-6E), and
  • N. meningitidis (Tables 8A-8E); and 7 tiers for S. aureus (Tables 7A-7G).
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality and (3) the presence of 5'G.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) the presence of 5'G.
  • the targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon).
  • the targeting domain for tier 5 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). For S.
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality, and (3) PAM is NNGRRT.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) PAM is NNGRRT.
  • the targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) PAM is NNGRRV.
  • the targeting domain for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), (2) the presence of 5'G and (3) PAM is NNGRRT.
  • the targeting domain for tier 6 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon) and (2) PAM is NNGRRT.
  • the targeting domain for tier 7 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon) and (2) PAM is NNGRRV.
  • tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • gRNAs were utilized for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
  • Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
  • the gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non- inclusive (each gRNA is listed only once).
  • gRNAs for use with the N. meningitidis (Tables 5E) and S. aureus (Tables 5D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
  • gRNAs Guide RNAs
  • S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm.
  • Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181).
  • Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity.
  • matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24.
  • an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface.
  • the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
  • RepeatMasker program RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
  • gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM).
  • Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence.
  • a "high level of orthogonality" or "good orthogonality” may, for example, refer to
  • Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
  • S. pyogenes and N. meningitidis targets 17-mer, or 20-mer gRNAs were designed.
  • S. aureus targets 18-mer, 19-mer, 20-mer,
  • Tarteting domains may comprise the 17-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
  • Tarteting domains, disclosed herein may comprises the 18-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 9A-9E, 10A- 10G or 11A-11E.
  • Tarteting domains may comprises the 19-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A- 11E.
  • Tarteting domains, disclosed herein may comprises the 20-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
  • Tarteting domains may comprises the 21-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
  • Tarteting domains, disclosed herein may comprises the 22-mer described in Tables 9A-9E, 10A-10G or 11A- HE, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
  • Tarteting domains may comprises the 23-mer described in Tables 9A-9E, 10A-10G or HA-llE,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
  • Tarteting domains, disclosed herein may comprises the 24- mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
  • the targeting domains discussed herein can be incorporated into the gRNAs described herein.
  • gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 9A-9E), and N. meningitidis (Tables 11A-11E); and 7 tiers for S. aureus (Tables 10A-10G). For S.
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, (2) a high level of orthogonality and (3) the presence of 5'G.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) a high level of orthogonality.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) the presence of 5'G.
  • the targeting domain for tier 4 gRNA molecules were selected based on distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site.
  • the targeting domain for tier 5 gRNA molecules were selected based on distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, (2) a high level of orthogonality, and (3) PAM is NNGRRT.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) PAM is NNGRRT.
  • the targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) PAM is NNGRRV.
  • the targeting domain for tier 5 gRNA molecules were selected based on (1) distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) , (2) the presence of 5'G and (3) PAM is NNGRRT.
  • the targeting domain for tier 6 gRNA molecules were selected based on (1) distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) and (2) PAM is NNGRRT.
  • the targeting domain for tier 7 gRNA molecules were selected based on (1) distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
  • the gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
  • gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
  • gRNAs While it can be desirable to have gRNAs start with a 5 ' G, this requirement was relaxed for some gRNAs in tier 1 in order to identify guides in the correct orientation, within a reasonable distance to the mutation and with a high level of orthogonality. In order to find a pair for the dual-nickase strategy it was necessary to either extend the distance from the mutation or remove the requirement for the 5'G. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non- inclusive (each gRNA is listed only once).
  • gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
  • gRNAs for use with the N. meningitidis (Tables 3E) and S. aureus (Tables 3D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
  • N. meningitidis Cas9s were identified using a DNA sequence searching algorithm.
  • Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181).
  • Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24.
  • an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface.
  • the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
  • RepeatMasker program searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
  • gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM).
  • Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence.
  • a "high level of orthogonality" or "good orthogonality” may, for example, refer to
  • Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
  • S. pyogenes and N. meningitidis targets 17-mer, or 20-mer gRNAs were designed.
  • S. aureus targets 18-mer, 19-mer, 20-mer,
  • Targeting domains may comprise the 17-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A- 15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B.
  • Targeting domains may comprises the 18-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B.
  • Targeting domains may comprises the 19-mer described in Tables 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, or 17A-17B.
  • Targeting domains may comprises the 20-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A- 17B.
  • Targeting domains may comprises the 21-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B.
  • Targeting domains may comprises the 22-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B.
  • Targeting domains may comprises the 23-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B.
  • Targeting domains may comprises the 24-mer described in Tables 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A- 15D, 16A-16E, or 17A-17B.
  • gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two
  • gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
  • the targeting domains discussed herein can be incorporated into the gRNAs described herein.
  • gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 12A-12D), and N. meningitidis (Tables 14A-14C); and 5 tiers for S. aureus (Tables 13A-13E).
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality and (3) the presence of 5'G.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) a high level of orthogonality.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) the presence of 5'G.
  • the targeting domain for tier 4 gRNA molecules were selected based on distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site. For S.
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, and (3) PAM is NNGRRT.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) the presence of a 5'G and (2) PAM is NNGRRT.
  • the targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRT.
  • the targeting domain for tier 5 gRNA molecules were selected based on (1) (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • gRNAs were identified and ranked into 4 tiers for S.
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality and (3) the presence of 5'G.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) a high level of orthogonality.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) the presence of 5'G.
  • the targeting domain for tier 4 gRNA molecules were selected based on distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site. For S.
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, and (3) PAM is NNGRRT.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) the presence of a 5'G and (2) PAM is NNGRRT.
  • the targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRT.
  • the targeting domain for tier 5 gRNA molecules were selected based on (1) (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
  • gRNAs were utilized for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
  • Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
  • the gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
  • gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
  • tiers are non- inclusive (each gRNA is listed only once). As discussed above, gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
  • gRNAs for use with the N. meningitidis (Tables 2E) and S. aureus (Tables 2D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
  • gRNAs Guide RNAs
  • S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm.
  • Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181).
  • Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity.
  • matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24.
  • an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface.
  • the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
  • RepeatMasker program searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
  • gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM).
  • Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence.
  • a "high level of orthogonality” or “good orthogonality” may, for example, refer to 20-mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence. Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
  • Targeting domains may comprise the 17-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • Targeting domains may comprises the 18-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • Targeting domains, disclosed herein may comprises the 19-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • Targeting domains may comprises the 20-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • Targeting domains, disclosed herein may comprises the 21-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • Targeting domains may comprises the 22-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • Targeting domains, disclosed herein may comprises the 23-mer described in Tables 18A-18D, 19A-19E, or 20A-20D,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • Targeting domains may comprises the 24-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
  • gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two
  • gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
  • the targeting domains discussed herein can be incorporated into the gRNAs described herein.
  • gRNAs were identified and ranked into 4 tiers for S. pyogenes
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) a high level of orthogonality and (3) the presence of 5'G.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) a high level of orthogonality.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) the presence of 5'G.
  • the targeting domain for tier 4 gRNA molecules were selected based on distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N). For S.
  • the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT.
  • the targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) a high level of orthogonality, and (3) PAM is NNGRRT.
  • the targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) the presence of a 5'G and (2) PAM is NNGRRT.
  • the targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) PAM is NNGRRT.
  • the targeting domain for tier 5 gRNA molecules were selected based on (1) (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) PAM is NNGRRV.
  • tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier. Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. for correcting a mutation (e.g., P370L) in the MYOC gene
  • Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
  • the gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
  • gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
  • gRNAs While it can be desirable to have gRNAs start with a 5 ' G, this requirement was relaxed for some gRNAs in tier 1 in order to identify guides in the correct orientation, within a reasonable distance to the mutation and with a high level of orthogonality. In order to find a pair for the dual-nickase strategy it was necessary to either extend the distance from the mutation or remove the requirement for the 5'G. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non- inclusive (each gRNA is listed only once).
  • gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
  • gRNAs for use with the N. meningitidis (Tables IE) and S. aureus (Tables ID) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.

Abstract

CRISPR/CAS-related compositions and methods for treatment of Primary Open Angle Glaucoma (POAG) are disclosed.

Description

CRISPR/CAS-RELATED METHODS AND COMPOSITIONS FOR TREATING
PRIMARY OPEN ANGLE GLAUCOMA
REFERENCE TO RELATED APPLICATIONS
The present application claims the benefit of U.S. Provisional Application No.
61/974,327, filed April 2, 2014, the contents of which are hereby incorporated by reference in their entirety.
FIELD OF THE INVENTION
The invention relates to CRISPR/CAS-related methods and components for editing of a target nucleic acid sequence, and applications thereof in connection with Primary Open Angle Glaucoma (POAG).
BACKGROUND
Glaucoma is the second leading cause of blindness in the world. Primary Open Angle Glaucoma (POAG) is the leading cause of glaucoma, representing more than 50% of glaucoma in the United States (Quigley et al. Investigations in Ophthalmology and Visual Sciencel997; 38:83-91). POAG affects 3 million subjects in the United States (Glaucoma Research Foundation: www.glaucoma.org; Accessed March 27, 2015). Approximately 1% of subjects ages 40-89 have POAG.
The disease develops due to an imbalance between the production and outflow of aqueous humor within the eye. Aqueous humor (AH) is produced by the ciliary body located in the anterior chamber of the eye. The vast majority (80%) of AH drains through the trabecular meshwork (TM) to the episcleral venous system. The remainder (20%) of AH drains through the interstitium between the iris root and ciliary muscle (Feisal et al., Canadian Family Physician 2005; 51(9): 1229-1237). POAG is likely due to decreased drainage through the trabecular meshwork. Decreased outflow of AH results in increased intraocular pressure (IOP). IOP causes damage to the optic nerve and leads to progressive blindness.
Mutations in the MYOC gene have been shown to be a leading genetic cause of
POAG. Mutations in MYOC have been shown to account for 3% of POAG. Approximately 90,000 individuals in the United States have POAG that is caused by MYOC mutations. Many patients with MYOC mutations develop rapidly advancing disease and early-onset POAG, including juvenile-onset POAG. MYOC mutations are inherited in an autosomal dominant fashion. Disease-causing mutations cluster in the olfactomedin domain of exon 3 of the MYOC gene. The most common MYOC mutation causing severe, early onset disease is a proline to leucine substitution at amino acid position 370 (P370L) (Waryah et al., Gene 2013; 528(2):356-9). The most common MYOC mutation is a missense mutation at amino acid position 368 (Q368X). This mutation is associated with less severe disease, termed late-onset POAG.
Treatments that reduce IOP can slow the progression of POAG. Trabeculectomy surgery and eye drops are both effective in in reducing IOP. Eye drops include alpha- adregergic antagonists and beta-adrenergic antagonists. However, POAG is known as a silent cause of blindness, as it is painless and leads to progressive blindness if left untreated.
Despite advances in POAG therapies, there remains a need for the treatment and prevention of POAG. A one-time or several dose treatment that reduces IOP and prevents the progression of POAG would be beneficial in the treatment and prevention of POAG. SUMMARY OF THE INVENTION
Methods and compositions discussed herein, allow the correction of disorders of the eye, e.g., disorders that affect trabecular meshwork cells, photoreceptor cells and any other cells in the eye, including those of the iris, ciliary body, optic nerve or aqueous humor.
In one aspect, methods and compositions discussed herein, provide for treating or delaying the onset or progression of (POAG). POAG is a common form of glaucoma, characterized by degeneration of the trabecular meshwork, which leads to obstruction of the normal ability of aqueous humor to leave the eye without closure of the space (e.g., the "angle") between the iris and cornea. This obstruction leads to increased intraocular pressure ("IOP"), which can result in progressive visual loss and blindness if not treated appropriately and in a timely fashion. POAG is a progressive ophthalmologic disorder characterized by increased intraocular pressure (IOP).
In one aspect, methods and compositions discussed herein, provide for the correction of the underlying cause of Primary Open Angle Glaucoma (POAG).
Mutations in the MYOC gene (also known as GPOA, JO AG, TIGR, GLC1A, JOAG1 and myocilin) have been shown to account for 3% of POAG. Certain mutations in MYOC lead to severe, early onset POAG. Mutations in the MYOC gene leading to POAG can be described based on the mutated amino acid residue(s) in the MYOC protein. Severe, early- onset POAG can be caused by mutations in the MYOC gene, including mutations in exon 3. Exemplary mutations include, but are not limited to the mutations T377R, 1477, and P370L (Zhuo et al., Molecular Vision 2008; 14: 1533-1539).
In an embodiment, the target mutation is at P370, e.g., P370L, in the MYOC gene. In an embodiment, the target mutation is at 1477, e.g., I477N or I477S, in the MYOC gene. In an embodiment, the target mutation is at T377, e.g., T377R, in the MYOC gene. In an embodiment, the target mutation is at Q368, e.g., Q368stop, in the MYOC gene. In an embodiment, the target mutation is a mutational hotspot between amino acid sequence positions 246-252 in the MYOC gene. In an embodiment, the target mutation is a mutational hotspot between amino acid sequence positions, e.g., amino acids 368-380, amino acids 368- 370 + 377-380, amino acids 364-380, or amino acids 347-380 in the MYOC gene. In an embodiment, the target mutation is a mutational hotspot between amino acid sequence positions 423-437 (e.g., amino acids 423-426, amino acids 423-427 and amino acids 423- 437) in the MYOC gene. In an embodiment, the target mutation is a mutational hotspot between amino acid sequence positions 477-502 in the MYOC gene.
"POAG target point position", as used herein, refers to a target position in the MYOC gene, typically a single nucleotide, which, if mutated, can result in a mutant protein and give rise to POAG. In an embodiment, the POAG target point position is a position in the MYOC gene at which a change can give rise to a mutant protein having a mutation at Q368 (e.g., Q368stop), P370 (e.g., the substitution P370L), T377 (e.g., the substitution T377R), or 1477 (e.g., the substitution I477N or I477S).
"POAG target hotspot position", as used herein, refers to a target position in a region of the MYOC gene, which: (1) encodes amino acid sequence positions 246-252, amino acid sequence positions 368-380, amino acid sequence positions 423-437, or amino acid sequence positions 477-502; and (2) when mutated, can give rise to a mutation in one of the aforesaid amino acid sequence regions and give rise to POAG.
While some of the disclosure herein is presented in the context of several specific mutations in the MYOC gene, the methods and compositions herein are broadly applicable to any mutation, e.g., a point mutation or a deletion, in the MYOC gene that gives rise to POAG.
While not wishing to be bound by theory, it is believed that, in an embodiment, a mutation at a POAG target point position or a POAG target hotspot position is corrected by homology directed repair (HDR), as described herein.
In another aspect, methods and compositions discussed herein may be used to alter the MYOC gene to treat or prevent POAG by targeting the MYOC gene, e.g., the non-coding or coding regions, e.g., the promoter region, or a transcribed sequence, e.g., intronic or exonic sequence. In an embodiment, coding sequence, e.g., a coding region, e.g., an early coding region, of the MYOC gene, is targeted for alteration and knockout of expression.
In another aspect, the methods and compositions discussed herein may be used to alter the MYOC gene to treat or prevent POAG by targeting the coding sequence of the MYOC gene. In one embodiment, the gene, e.g., the coding sequence of the MYOC gene, is targeted to knockout the gene, e.g., to eliminate expression of the gene, e.g., to knockout both alleles of the MYOC gene, e.g., by induction of an alteration comprising a deletion or mutation in the MYOC gene. In an embodiment, the method provides an alteration that comprises an insertion or deletion, while not wishing to be bound by theory, in an embodiment, a targeted knockout approach is mediated by non-homologous end joining (NHEJ) using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically active Cas9 (eaCas9) molecule.
In one embodiment, a coding region, e.g., an early coding region, of the MYOC gene is targeted to knockout the MYOC gene. In an embodiment, targeting affects both alleles of the MYOC gene. In an embodiment, a targeted knockout approach reduces or eliminates expression of functional MYOC gene product. In an embodiment, the method provides an alteration that comprises an insertion or deletion.
In another aspect, the methods and compositions discussed herein may be used to alter the MYOC gene to treat or prevent POAG by targeting non-coding sequence of the MYOC gene, e.g., promoter, an enhancer, an intron, 3'UTR, and/or polyadenylation signal. In one embodiment, the gene, e.g., the non-coding sequence of the MYOC gene, is targeted to knockout the gene, e.g., to eliminate expression of the gene, e.g., to knockout both alleles of the MYOC gene, e.g., by induction of an alteration comprising a deletion or mutation in the MYOC gene. In an embodiment, the method provides an alteration that comprises an insertion or deletion.
"POAG target knockout position", as used herein, refers to a target position in the
MYOC gene, which if altered by NHEJ-mediated alteration, results in reduction or elimination of expression of a functional MYOC gene product. In an embodiment, the position is in the MYOC coding region, e.g., an early coding region.
In another aspect, methods and compositions discussed herein may be used to alter the expression of the MYOC gene to treat or prevent POAG by targeting the MYOC gene, e.g., a promoter region of the MYOC gene. In an embodiment, the promoter region of the MYOC gene is targeted to knockdown expression of the MYOC gene. A targeted knockdown approach reduces or eliminates expression of a mutated MYOC gene. As described herein, a targeted knockdown approach is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain or chromatin modifying protein) to alter transcription, e.g., block, reduce, or decrease transcription, of the MYOC gene. While not wishing to be bound by theory, in an embodiment, a targeted knockdown approach is mediated by NHEJ using a CRISPR/Cas system comprising a Cas9 molecule, e.g., an enzymatically inactive Cas9 (eiCas9) molecule.
"POAG target knockdown position", as used herein, refers to a position, e.g., in the MYOC gene, which if targeted by an eiCas9 molecule or an eiCas9 fusion described herein, results in reduction or elimination of expression of functional MYOC gene product. In an embodiment, transcription is reduced or eliminated. In an embodiment, the position is in the MYOC promoter sequence. In an embodiment, a position in the promoter sequence of the MYOC gene is targeted by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9- fusion protein, as described herein.
"POAG target position", as used herein, refers to any of the POAG target point positions, POAG target hotspot positions, POAG target knockout positions and/or POAG target knockdown positions in the MYOC gene, as described herein.
In one aspect, disclosed herein is a gRNA molecule, e.g., an isolated or non- naturally occurring gRNA molecule, comprising a targeting domain which is complementary with a target domain from the MYOC gene.
In an embodiment, the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of a POAG target position. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of a POAG target position in the MYOC gene.
In an embodiment, a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the POAG target position in the MYOC gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of the POAG target position in the MYOC gene, either alone or in combination with the break positioned by said first gRNA molecule. In an embodiment, the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a POAG target position in the MYOC gene. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on one side, e.g., upstream or downstream, of a nucleotide of a POAG target position in the MYOC gene.
In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below. For example, the targeting domains are configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of a POAG target position. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 molecule, e.g., a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of a POAG target position in the MYOC gene. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 molecule is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500nucleotides of the target position.
In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position. In an embodiment, the targeting domain of the first, second and third gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules.
In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule. For example, the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of a POAG target position in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 300, 400, or 500 nucleotides of the target position.
It is contemplated herein that, in an embodiment, when multiple gRNAs are used to generate (1) two single stranded breaks in close proximity, (2) two double stranded breaks, e.g., flanking a POAG target position, e.g., a mutation (e.g., to remove a piece of DNA, e.g., a insertion mutation) or to create more than one indel in an early coding region, (3) one double stranded break and two paired nicks flanking a POAG target position, e.g., a mutation (e.g., to remove a piece of DNA, e.g., a insertion mutation) or (4) four single stranded breaks, two on each side of a mutation, that they are targeting the same POAG target position. It is further contemplated herein that multiple gRNAs may be used to target more than one POAG target position (e.g., mutation) in the same gene.
In an embodiment, the targeting domain of the first gRNA molecule and the targeting domain of the second gRNA molecules are complementary to opposite strands of the target nucleic acid molecule. In an embodiment, the gRNA molecule and the second gRNA molecule are configured such that the PAMs are oriented outward.
In an embodiment, the targeting domain of a gRNA molecule is configured to avoid unwanted target chromosome elements, such as repeat elements, e.g., Alu repeats, in the target domain. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
In an embodiment, the targeting domain of a gRNA molecule is configured to position a cleavage event sufficiently far from a preselected nucleotide, e.g., the nucleotide of a coding region, such that the nucleotide is not altered. In an embodiment, the targeting domain of a gRNA molecule is configured to position an intronic cleavage event sufficiently far from an intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events. The gRNA molecule may be a first, second, third and/or fourth gRNA molecule, as described herein.
In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence described herein, e.g., from any one of Tables 1A-1E, 2A-2E, 3A-3E, 4A- 4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as a targeting domain sequence described herein, e.g., from any one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A- 19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
In an embodiment, when two or more gRNAs are used to position two or more breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is independently selected from any one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A- 15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
In an embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1E, 21A-21D, 22A-22E, or 23A-23B. In some embodiments, the targeting domain is independently selected from those in Tables 1A-1E, 21A-21D, 22A-22E, or 23A-23B.
In an embodiment, when the POAG target point position is P370L and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 1A-1E, 21A-21D, 22A-22E, or 23A-23B.
In an embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 1A-1E. In some embodiments, the targeting domain is independently selected from those in Tables 1A-1E. For example, in certain embodiments, the targeting domain is independently selected from Table 1A.
In an embodiment, when the POAG target point position is P370L and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 1A-1E.
In an embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 21A-21D. In some embodiments, the targeting domain is independently selected from those in Tables 21A-21D. For example, in certain
embodiments, the targeting domain is independently selected from Table 21A.
In an embodiment, when the POAG target point position is P370L and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 21A-21D.
In an embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 22A-22E. In some embodiments, the targeting domain is independently selected from those in Tables 22A-22E. For example, in certain
embodiments, the targeting domain is independently selected from Table 22 A.
In an embodiment, when the POAG target point position is P370L and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 22A-22E.
In an embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at P370, e.g., a point mutation P370L, is targeted, e.g., for correction. In an embodiment, the targeting domain of a gRNA molecule comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 23A-23B. In some embodiments, the targeting domain is independently selected from those in Tables 23A-23B. For example, in certain
embodiments, the targeting domain is independently selected from Table 23 A.
In an embodiment, when the POAG target point position is P370L and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 23A-23B.
In another embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N, is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2E, 18A-18D, 19A-19E, or 20A-20D. In an embodiment, the targeting domain is independently selected from those in Tables 2A-2E, 18A-18D, 19A-19E, or 20A-20D.
In an embodiment, when the POAG target point position is I477N and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 2A-2E, 18A-18D, 19A-19E, or 20A-20D.
In another embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N, is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 2A-2E. In an embodiment, the targeting domain is independently selected from those in Tables 2A-2E. In another embodiment, the targeting domain is independently selected from Table 2A. In an embodiment, when the POAG target point position is I477N and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 2A-2E.
In another embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N, is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 18A-18D. In an embodiment, the targeting domain is independently selected from those in Tables 18A-18D. In another embodiment the targeting domain is independently selected from Table 18 A. In an embodiment, when the POAG target point position is I477N and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 18A-18D.
In another embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N, is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 19A-19E. In an embodiment, the targeting domain is independently selected from those in Tables 19A-19E. In another embodiment the targeting domain is independently selected from Table 19A.
In an embodiment, when the POAG target point position is I477N and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 19A-19E.
In another embodiment, a POAG target position, e.g., a mutation in the MYOC gene, e.g., a mutation at 1477, e.g., a point mutation I477N, is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 20A-20D. In an embodiment, the targeting domain is independently selected from those in Tables 20A-20D. In another embodiment the targeting domain is independently selected from Table 20A.
In an embodiment, when the POAG target point position is I477N and two gRNAs are used to position two breaks, e.g., two single stranded breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 20A-20D.
In an embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B. In an embodiment, the targeting domain is independently selected from those in Tables 3A-3E, 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, or 17A-17B.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 3A-3E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B. In another embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 3A-3E. In an embodiment, the targeting domain is independently selected from those in Tables 3A-3E. In another embodiment, the targeting domain is independently selected from Table 3A.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 3A-3E.
In another embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 12A-12D. In an embodiment, the targeting domain is independently selected from those in Tables 12A-12D. In another embodiment, the targeting domain is independently selected from Table 12A.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 12A-12D.
In another embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 13A-13E. In an embodiment, the targeting domain is independently selected from those in Tables 13A-13E. In another embodiment, the targeting domain is independently selected from Table 13A.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 13A-13E. In another embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 14A-14C. In an embodiment, the targeting domain is independently selected from those in Tables 14A-14C. In another embodiment, the targeting domain is independently selected from Table 14A.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 14A-14C.
In another embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 15A-15D. In an embodiment, the targeting domain is independently selected from those in Tables 15A-15D. In another embodiment, the targeting domain is independently selected from Table 15A.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 15A-15D.
In another embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 16A-16E. In an embodiment, the targeting domain is independently selected from those in Tables 16A-16E. In another embodiment, the targeting domain is independently selected from Table 16A.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 16A-16E. In another embodiment, a POAG target position, e.g., a mutation hotspot between amino acids 477-502 is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 17A-17B. In an embodiment, the targeting domain is independently selected from those in Tables 17A-17B. In another embodiment, the targeting domain is independently selected from Table 17A.
In an embodiment, when the POAG target hotspot position is the mutation hotspot between amino acids 477-502 and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 17A-17B.
In another embodiment, the early coding region of the MYOC gene is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 4A-4E, 6A-6E, 7A-7G, or 8A-8E. In an embodiment, the targeting domain is independently selected from those in Tables 4A-4E, 6A-6E, 7A-7G, or 8A-8E.
In an embodiment, when the POAG target knockout position is the MYOC early coding region and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 4A-4E, 6A-6E, 7A-7G, or 8A-8E.
In another embodiment, the early coding region of the MYOC gene is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 4A-4E. In an embodiment, the targeting domain is independently selected from those in Tables 4A-4E. In another embodiment, the targeting domain is independently selected from Table 4A.
In an embodiment, when the POAG target knockout position is the MYOC early coding region and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 4A-4E. In another embodiment, the early coding region of the MYOC gene is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 6A-6E. In an embodiment, the targeting domain is independently selected from those in Tables 6A-6E. In another embodiment, the targeting domain is independently selected from Table 6A.
In an embodiment, when the POAG target knockout position is the MYOC early coding region and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 6A-6E.
In another embodiment, the early coding region of the MYOC gene is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 7A-7G. In an embodiment, the targeting domain is independently selected from those in Tables 7A-7G. In another embodiment, the targeting domain is independently selected from Table 7A.
In an embodiment, when the POAG target knockout position is the MYOC early coding region and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 7A-7G.
In another embodiment, the early coding region of the MYOC gene is targeted, e.g., for correction. In an embodiment, the targeting domain comprises a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 8A-8E. In an embodiment, the targeting domain is independently selected from those in Tables 8A-8E. In another embodiment, the targeting domain is independently selected from Table 8A.
In an embodiment, when the POAG target knockout position is the MYOC early coding region and more than one gRNA is used to position breaks, e.g., two single stranded breaks or two double stranded breaks, or a combination of single strand and double strand breaks, e.g., to create one or more indels, in the target nucleic acid sequence, each guide RNA is selected from one of Tables 8A-8E. In an embodiment, the targeting domain of the gRNA molecule is configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene. In an embodiment, the targeting domain is configured to target the promoter region of the MYOC gene to reduce (e.g., block) transcription initiation, binding of one or more transcription enhancers or activators, and/or RNA polymerase. One or more gRNA may be used to target an eiCas9 molecule to the promoter region of the MYOC gene.
In an embodiment, when the MYOC promoter region is targeted, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 5A-5F, 9A-9E, 10A- 10G, or 11A-11E. In an embodiment, the targeting domain is independently selected from those in Tables 5A-5F, 9A-9E, 10A-10G, or 11A-11E.
In an embodiment, when the POAG target knockdown position is the MYOC promoter region and more than one gRNA is used to position an eiCas9 molecule or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of 5A-5F, 9A-9E, 10A- 10G, or 11A-11E.
In an embodiment, when the MYOC promoter region is targeted, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 5A-5F. In an embodiment, the targeting domain is independently selected from those in Tables 5A-5F. In another embodiment, the targeting domain is independently selected from Table 5A.
In an embodiment, when the POAG target knockdown position is the MYOC promoter region and more than one gRNA is used to position an eiCas9 molecule or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 5A-5F.
In an embodiment, when the MYOC promoter region is targeted, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 9A-9E. In an embodiment, the targeting domain is independently selected from those in Tables 9A-9E. In another embodiment, the targeting domain is independently selected from Table 9A.
In an embodiment, when the POAG target knockdown position is the MYOC promoter region and more than one gRNA is used to position an eiCas9 molecule or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 9A-9E.
In an embodiment, when the MYOC promoter region is targeted, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 10A-10G. In an embodiment, the targeting domain is independently selected from those in Tables 10A-10G. In another embodiment, the targeting domain is independently selected from Table 10A.
In an embodiment, when the POAG target knockdown position is the MYOC promoter region and more than one gRNA is used to position an eiCas9 molecule or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 10A-10G.
In an embodiment, when the MYOC promoter region is targeted, the targeting domain can comprise a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of Tables 11A-11E. In an embodiment, the targeting domain is independently selected from those in Tables 11A-11E. In another embodiment, the targeting domain is independently selected from Table 11A.
In an embodiment, when the POAG target knockdown position is the MYOC promoter region and more than one gRNA is used to position an eiCas9 molecule or an eiCas9-fusion protein (e.g., an eiCas9-transcription repressor domain fusion protein), in the target nucleic acid sequence, each guide RNA is selected from one of Tables 11A-11E.
In an embodiment, the gRNA, e.g., a gRNA comprising a targeting domain, which is complementary with the MYOC gene, is a modular gRNA. In other embodiments, the gRNA is a unimolecular or chimeric gRNA.
In an embodiment, the targeting domain which is complementary with a target domain from the POAG target position in the MYOC gene is 16 nucleotides or more in length. In an embodiment, the targeting domain is 16 nucleotides in length. In an embodiment, the targeting domain is 17 nucleotides in length. In another embodiment, the targeting domain is 18 nucleotides in length. In still another embodiment, the targeting domain is 19 nucleotides in length. In still another embodiment, the targeting domain is 20 nucleotides in length. In still another embodiment, the targeting domain is 21 nucleotides in length. In still another embodiment, the targeting domain is 22 nucleotides in length. In still another embodiment, the targeting domain is 23 nucleotides in length. In still another embodiment, the targeting domain is 24 nucleotides in length. In still another embodiment, the targeting domain is 25 nucleotides in length. In still another embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
A gRNA as described herein may comprise from 5' to 3': a targeting domain (comprising a "core domain", and optionally a "secondary domain"); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In some embodiments, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
In another embodiment, a gRNA comprises a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greather than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length. A cleavage event, e.g., a double strand or single strand break, is generated by a Cas9 molecule. The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule forms a single strand break in a target nucleic acid (e.g., a nickase molecule).
Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kriippel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
In an embodiment, the eaCas9 molecule catalyzes a double strand break.
In some embodiments, the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A. In another embodiment, the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In an embodiment, the eaCas9 molecule is an N- terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A. In an embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., an N863A mutation.
In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which the targeting domain of said gRNA is complementary.
In another aspect, disclosed herein is a nucleic acid, e.g., an isolated or non-naturally occurring nucleic acid, e.g., DNA, that comprises (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a POAG target position in the MYOC gene as disclosed herein.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., a first gRNA molecule, comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene.
In an embodiment, the nucleic acid encodes a gRNA molecule, e.g., the first gRNA molecule, comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any one of 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A- 11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B. In an embodiment, the nucleic acid encodes a gRNA molecule comprising a targeting domain is selected from those in 1A-1E, 2A-2E, 3A- 3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
In an embodiment, the nucleic acid encodes a modular gRNA, e.g., one or more nucleic acids encode a modular gRNA. In another embodiment, the nucleic acid encodes a chimeric gRNA. The nucleic acid may encode a gRNA, e.g., the first gRNA molecule, comprising a targeting domain comprising 16 nucleotides or more in length. In an embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 16 nucleotides in length. In another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 17 nucleotides in length. In another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a gRNA, e.g., the first gRNA molecule, comprising a targeting domain that is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, a nucleic acid encodes a gRNA comprising from 5' to 3': a targeting domain (comprising a "core domain", and optionally a "secondary domain"); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In some embodiments, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA e.g., the first gRNA molecule, comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, a nucleic acid encodes a gRNA comprising e.g., the first gRNA molecule, a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater than 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length. In an embodiment, a nucleic acid comprises (a) a sequence that encodes a gRNA molecule e.g., the first gRNA molecule, comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein, and further comprising (b) a sequence that encodes a Cas9 molecule.
The Cas9 molecule may be an enzymatically active Cas9 (eaCas9) molecule, e.g., an eaCas9 molecule that forms a double strand break in a target nucleic acid or an eaCas9 molecule that forms a single strand break in a target nucleic acid (e.g., a nickase molecule). In an embodiment, a single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA is complementary. In another embodiment, a single strand break is formed in the strand of the target nucleic acid other than the strand to which to which the targeting domain of said gRNA is complementary.
In an embodiment, the eaCas9 molecule catalyzes a double strand break.
In an embodiment, the eaCas9 molecule comprises HNH-like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity. In another embodiment, the said eaCas9 molecule is an HNH-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at D10, e.g., D10A. In another embodiment, the eaCas9 molecule comprises N-terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity. In another embodiment, the eaCas9 molecule is an N-terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at H840, e.g., H840A. In another embodiment, the eaCas9 molecule is an N- terminal RuvC-like domain nickase, e.g., the eaCas9 molecule comprises a mutation at N863, e.g., an N863A mutation.
A nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the BCL11A gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule.
Alternatively, in an embodiment, the Cas9 molecule may be an enzymatically inactive Cas9 (eiCas9) molecule or a modified eiCas9 molecule, e.g., the eiCas9 molecule is fused to Kruppel-associated box (KRAB) to generate an eiCas9-KRAB fusion protein molecule.
A nucleic acid disclosed herein may comprise (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; and further may comprise (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the MYOC gene, and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the MYOC gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the MYOC gene.
In an embodiment, a nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene, to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene, either alone or in combination with the break positioned by said first gRNA molecule.
In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene.
In an embodiment, a nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene, either alone or in combination with the break positioned by the first and/or second gRNA molecule.
In an embodiment, the nucleic acid encodes a third gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the BCL11A gene.
In an embodiment, a nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to a POAG target position in the MYOC gene to allow alteration, e.g., alteration associated with HDR or NHEJ, of a POAG target position in the MYOC gene, either alone or in combination with the break positioned by the first gRNA molecule, the second gRNA molecule and/or the third gRNA molecule.
In an embodiment, the nucleic acid encodes a fourth gRNA molecule comprising a targeting domain configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain), sufficiently close to a POAG target knockdown position to reduce, decrease or repress expression of the MYOC gene.
In an embodiment, the nucleic acid encodes a second gRNA molecule. The second gRNA is selected to target the same POAG target position as the first gRNA molecule.
Optionally, the nucleic acid may encode a third gRNA, and further optionally, the nucleic acid may encode a fourth gRNA molecule. The third gRNA molecule and the fourth gRNA molecule are selected to target the same POAG target position as the first and second gRNA molecules.
In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B. In an embodiment, the nucleic acid encodes a second gRNA molecule comprising a targeting domain selected from those in Tables 1A-1E, 2A-2E, 3A- 3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B. In an embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain comprising a sequence that is the same as, or differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from one of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A- 22E, or 23A-23B. In a further embodiment, when a third or fourth gRNA molecule are present, the third and fourth gRNA molecules may independently comprise a targeting domain selected from those in Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A- 7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A- 16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
In an embodiment, the nucleic acid encodes a second gRNA which is a modular gRNA, e.g., wherein one or more nucleic acid molecules encode a modular gRNA. In another embodiment, the nucleic acid encoding a second gRNA is a chimeric gRNA. In another embodiment, when a nucleic acid encodes a third or fourth gRNA, the third and fourth gRNA may be a modular gRNA or a chimeric gRNA. When multiple gRNAs are used, any combination of modular or chimeric gRNAs may be used.
A nucleic acid may encode a second, a third, and/or a fourth gRNA, each
independently, comprising a targeting domain comprising 16 nucleotides or more in length. In an embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 16 nucleotides in length. In an embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 17 nucleotides in length. In another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 18 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 19 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 20 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 21 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 22 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 23 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 24 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 25 nucleotides in length. In still another embodiment, the nucleic acid encodes a second gRNA comprising a targeting domain that is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA, each independently, comprising from 5 ' to 3 ' : a targeting domain (comprising a "core domain", and optionally a "secondary domain"); a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain. In some embodiments, the proximal domain and tail domain are taken together as a single domain.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 20 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 25 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 30 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
In an embodiment, a nucleic acid encodes a second, a third, and/or a fourth gRNA comprising a linking domain of no more than 25 nucleotides in length; a proximal and tail domain, that taken together, are at least 40 nucleotides in length; and a targeting domain equal to or greater thanl6, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26nucleotides in length.
In an embodiment, when the MYOC gene is corrected by HDR, the nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein; (b) a sequence that encodes a Cas9 molecule; optionally, (c)(i) a sequence that encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the MYOC gene, and further optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the MYOC gene; and still further optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the MYOC gene; and further may comprise (d) a template nucleic acid, e.g., a template nucleic acid described herein.
In an embodiment, the template nucleic acid is a single stranded nucleic acid. In another embodiment, the template nucleic acid is a double stranded nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that will be added to or will template a change in the target nucleic acid. In another embodiment, the template nucleic acid comprises a nucleotide sequence that may be used to modify the target position. In another embodiment, the template nucleic acid comprises a nucleotide sequence, e.g., of one or more nucleotides, that corresponds to wild type sequence of the target nucleic acid, e.g., of the target position.
The template nucleic acid may comprise a replacement sequence, e.g., a replacement sequence from the Table 24. In some embodiments, the template nucleic acid comprises a 5' homology arm, e.g., a 5' homology arm from Table 24. In other embodiments, the template nucleic acid comprises a 3' homology arm, e.g., a 3' homology arm from Table 24.
In an embodiment, a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein. In an embodiment, (a) and (b) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno- associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector. Exemplary AAV vectors that may be used in any of the described compositions and methods include an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector and an AAV9 vector.
In another embodiment, (a) is present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) is present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecules may be AAV vectors.
In another embodiment, a nucleic acid encodes (a) a sequence that encodes a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene as disclosed herein, and (b) a sequence that encodes a Cas9 molecule, e.g., a Cas9 molecule described herein; andfurther comprise (c)(i) a sequence that encodes a second gRNA molecule as described herein and optionally, (c)(ii) a sequence that encodes a third gRNA molecule described herein having a targeting domain that is complementary to a third target domain of the MYOC gene; and optionally, (c)(iii) a sequence that encodes a fourth gRNA molecule described herein having a targeting domain that is complementary to a fourth target domain of the MYOC gene. In some embodiments, the nucleic acid comprises (a), (b) and (c)(i). In an embodiment, the nucleic acid comprises (a), (b), (c)(i) and (c)(ii). In an embodiment, the nucleic acid comprises (a), (b), (c)(i), (c)(ii) and (c)(iii). Each of (a) and (c)(i), (c)(ii) and/or (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., the same adeno-associated virus (AAV) vector. In an embodiment, the nucleic acid molecule is an AAV vector.
In another embodiment, (a) and (c)(i) are on different vectors. For example, (a) may be present on a first nucleic acid molecule, e.g. a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (c)(i) may be present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. In an embodiment, the first and second nucleic acid molecules are AAV vectors.
In another embodiment, each of (a), (b), and (c)(i) are present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, one of (a), (b), and (c)(i) is encoded on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and a second and third of (a), (b), and (c)(i) is encoded on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In an embodiment, (a) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, a first AAV vector; and (b) and (c)(i) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, (b) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (a) and (c)(i) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, (c)(i) is present on a first nucleic acid molecule, e.g., a first vector, e.g., a first viral vector, e.g., a first AAV vector; and (b) and (a) are present on a second nucleic acid molecule, e.g., a second vector, e.g., a second vector, e.g., a second AAV vector. The first and second nucleic acid molecule may be AAV vectors.
In another embodiment, each of (a), (b) and (c)(i) are present on different nucleic acid molecules, e.g., different vectors, e.g., different viral vectors, e.g., different AAV vector. For example, (a) may be on a first nucleic acid molecule, (b) on a second nucleic acid molecule, and (c)(i) on a third nucleic acid molecule. The first, second and third nucleic acid molecule may be AAV vectors.
In another embodiment, when a third and/or fourth gRNA molecule are present, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In a further
embodiment, each of (a), (b), (c)(i), (c)(ii) and (c)(iii) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In a further embodiment, each of (a), (b), and (d) may be present on more than one nucleic acid molecule, but fewer than three nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In a further embodiment, each of (a), (b), (c)(i) and (d) may be present on more than one nucleic acid molecule, but fewer than four nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In a further embodiment, each of (a), (b), (c)(i), (c)(ii) and (d) may be present on more than one nucleic acid molecule, but fewer than five nucleic acid molecules, e.g., AAV vectors.
In another embodiment, when (d) a template nucleic acid is present, each of (a), (b),
(c)(i), (c)(ii), (c)(iii) and (d) may be present on the same nucleic acid molecule, e.g., the same vector, e.g., the same viral vector, e.g., an AAV vector. In an embodiment, the nucleic acid molecule is an AAV vector. In an alternate embodiment, each of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d) may be present on the different nucleic acid molecules, e.g., different vectors, e.g., the different viral vectors, e.g., different AAV vectors. In a further embodiment, each of (a),
(b) , (c)(i), (c)(ii), (c)(iii) and (d) may be present on more than one nucleic acid molecule, but fewer than six nucleic acid molecules, e.g., AAV vectors.
The nucleic acids described herein may comprise a promoter operably linked to the sequence that encodes the gRNA molecule of (a), e.g., a promoter described herein. The nucleic acid may further comprise a second promoter operably linked to the sequence that encodes the second, third and/or fourth gRNA molecule of (c), e.g., a promoter described herein. The promoter and second promoter differ from one another. In some embodiments, the promoter and second promoter are the same.
The nucleic acids described herein may further comprise a promoter operably linked to the sequence that encodes the Cas9 molecule of (b), e.g., a promoter described herein.
In another aspect, disclosed herein is a composition comprising (a) a gRNA molecule comprising a targeting domain that is complementary with a target domain in the MYOC gene, as described herein. The composition of (a) may further comprise (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein. A composition of (a) and (b) may further comprise
(c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule described herein. A composition of (a), (b) and (c) a second, third and/or fourth gRNA molecule, e.g., a second, third and/or fourth gRNA molecule may further comprise (d) a template nucleic acid, e.g., a template nucleic acid described herein. In an embodiment, the composition is a pharmaceutical composition. The compositions described herein, e.g., pharmaceutical compositions described herein, can be used in the treatment or prevention of POAG in a subject, e.g., in accordance with a method disclosed herein..
In another aspect, disclosed herein is a method of altering a cell, e.g., altering the structure, e.g., altering the sequence, of a target nucleic acid of a cell, comprising contacting said cell with: (a) a gRNA that targets the MYOC gene, e.g., a gRNA as described herein; (b) a Cas9 molecule, e.g., a Cas9 molecule as described herein; and optionally, (c) a second, third and/or fourth gRNA that targets MYOC gene, e.g., a second third and/or fourth gRNA as described herein; and optionally, (d) a template nucleic acid, as described herein.
In an embodiment, the method comprises contacting said cell with (a) and (b).
In an embodiment, the method comprises contacting said cell with (a), (b), and (c).
In an embodiment, the method comprises contacting said cell with (a), (b), (c) and (d). The gRNA of (a) and optionally (c) may be selected from any of 1A-1E, 2A-2E, 3A- 3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A- 6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
In an embodiment, the method comprises contacting a cell from a subject suffering from or likely to develop POAG. The cell may be from a subject having a mutation at a POAG target position in the MYOC gene.
In an embodiment, the cell being contacted in the disclosed method is a target cell from the eye of the subject. The cell may be a trabecular meshwork cell, retinal pigment epithelial cell, a retinal cell, an iris cell, a ciliary body cell and/or the optic nerve. The contacting may be performed ex vivo and the contacted cell may be returned to the subject's body after the contacting step. In other embodiments, the contacting step may be performed in vivo.
In an embodiment, the method of altering a cell as described herein comprises acquiring knowledge of the presence of a mutation at a POAG target position in said cell, prior to the contacting step. Acquiring knowledge of the presence of a mutation at a POAG target position in the cell may be by sequencing the MYOC gene, or a portion of the MYOC gene.
In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), and (c). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b) and a nucleic acid which encodes a gRNA (a) and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(ii) and/or fourth gRNA (c)(iii).
In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses at least one of (a), (b), (c) and (d). In an embodiment, the contacting step of the method comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, that expresses each of (a), (b), and (c). In another embodiment, the contacting step of the method comprises delivering to the cell a Cas9 molecule of (b), a nucleic acid which encodes a gRNA of (a) and a template nucleic acid of (d), and optionally, a second gRNA (c)(i) (and further optionally, a third gRNA (c)(ii) and/or fourth gRNA (c)(iii). In an embodiment, contacting comprises contacting the cell with a nucleic acid, e.g., a vector, e.g., an AAV vector, e.g., an AAV2 vector, a modified AAV2 vector, an AAV3 vector, a modified AAV3 vector, an AAV6 vector, a modified AAV6 vector, an AAV8 vector or an AAV9 vector, as described herein.
In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, and a nucleic acid which encodes a gRNA of (a) and optionally a second, third and/or fourth gRNA (c).
In an embodiment, contacting comprises delivering to the cell a Cas9 molecule of (b), as a protein or an mRNA, said gRNA of (a), as an RNA, and optionally said second, third and/or fourth gRNA of (c), as an RNA.
In an embodiment, contacting comprises delivering to the cell a gRNA of (a) as an RNA, optionally said second, third and/or fourth gRNA of (c) as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
In another aspect, disclosed herein is a method of treating a subject suffering from or likely to develop POAG, e.g., altering the structure, e.g., sequence, of a target nucleic acid of the subject, comprising contacting the subject (or a cell from the subject) with:
(a) a gRNA that targets the MYOC gene, e.g., a gRNA disclosed herein;
(b) a Cas9 molecule, e.g., a Cas9 molecule disclosed herein; and
optionally, (c)(i) a second gRNA that targets the MYOC gene, e.g., a second gRNA disclosed herein, and
further optionally, (c)(ii) a third gRNA, and still further optionally, (c)(iii) a fourth gRNA that target the MYOC gene, e.g., a third and fourth gRNA disclosed herein.
The method of treating a subject may further comprise contacting the subject (or a cell from the subject) with (d) a template nucleic acid, e.g., a template nucleic acid disclosed herein. A template nucleic acid is used when the method of treating a subject uses HDR to alter the sequence of the target nucleic acid of the subject.
In some embodiments, contacting comprises contacting with (a) and (b).
In some embodiments, contacting comprises contacting with (a), (b), and (c)(i).
In some embodiments, contacting comprises contacting with (a), (b), (c)(i) and (c)(ii). In some embodiments, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and
(c) (iii).
In some embodiments, contacting comprises contacting with (a), (b), (c)(i) and (d). In some embodiments, contacting comprises contacting with (a), (b), (c)(i), (c)(ii) and
(d) . In some embodiments, contacting comprises contacting with (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
The gRNA of (a) or (c) (e.g., (c)(i), (c)(ii), or (c)(iii) may be selected from any of 1A- 1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A- 20D, 21A-21D, 22A-22E, or 23A-23B, or a gRNA that differs by no more than 1, 2, 3, 4, or 5 nucleotides from, a targeting domain sequence from any of 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A- 23B.
In an embodiment, the method comprises acquiring knowledge of the presence of a mutation at a POAG target position in said subject.
In an embodiment, the method comprises acquiring knowledge of the presence of a mutation at a POAG target position in said subject by sequencing the MYOC gene or a portion of the MYOC gene.
In an embodiment, the method comprises correcting a mutation at a POAG target position.
In an embodiment, the method comprises correcting a mutation at a POAG target position by HDR.
In an embodiment, the method comprises correcting a mutation at a POAG target position by NHEJ.
When the method comprises correcting the mutation at a POAG target position by HDR, a Cas9 of (b), at least one guide RNA (e.g., a guide RNA of (a) and a template nucleic acid of (d) are included in the contacting step.
In an embodiment, a cell of the subject is contacted ex vivo with (a), (b), (d) and optionally (c). In an embodiment, said cell is returned to the subject's body.
In an embodiment, a cell of the subject is contacted is in vivo with (a), (b) (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the cell of the subject is contacted in vivo by subretinal delivery of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the contacting step comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a), a nucleic acid of (d) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, a nucleic acid of (d) and optionally the second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA.
In an embodiment, the contacting step comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA, a nucleic acid that encodes the Cas9 molecule of (b), and a nucleic acid of (d).
When the method comprises (1) correcting the mutation at a POAG target position by NHEJ or (2) knocking down expression of the MYOC gene by targeting the promoter region, a Cas9 of (b) and at least one guide RNA (e.g., a guide RNA of (a) are included in the contacting step.
In an embodiment, a cell of the subject is contacted ex vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, said cell is returned to the subject's body.
In an embodiment, a cell of the subject is contacted is in vivo with (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii). In an embodiment, the cell of the subject is contacted in vivo by subretinal delivery of (a), (b) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises contacting the subject with a nucleic acid, e.g., a vector, e.g., an AAV vector, described herein, e.g., a nucleic acid that encodes at least one of (a), (b), and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises delivering to said subject said Cas9 molecule of (b), as a protein or mRNA, and a nucleic acid which encodes (a) and optionally (c)(i), further optionally (c)(ii), and still further optionally (c)(iii).
In an embodiment, the contacting step comprises delivering to the subject the Cas9 molecule of (b), as a protein or mRNA, the gRNA of (a), as an RNA, and optionally the second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA. In an embodiment, the contacting step comprises delivering to the subject the gRNA of (a), as an RNA, optionally said second gRNA of (c)(i), further optionally said third gRNA of (c)(ii), and still further optionally said fourth gRNA of (c)(iii), as an RNA, and a nucleic acid that encodes the Cas9 molecule of (b).
In another aspect, disclosed herein is a reaction mixture comprising a gRNA molecule, a nucleic acid, or a composition described herein, and a cell, e.g., a cell from a subject having, or likely to develop POAG, or a subject having a mutation at a POAG target position
In another aspect, disclosed herein is a kit comprising, (a) a gRNA molecule described herein, or nucleic acid that encodes the gRNA, and one or more of the following:
(b) a Cas9 molecule, e.g., a Cas9 molecule described herein, or a nucleic acid or mRNA that encodes the Cas9;
(c) (i) a second gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(i);
(c)(ii) a third gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(ii);
(c) (iii) a fourth gRNA molecule, e.g., a second gRNA molecule described herein or a nucleic acid that encodes (c)(iii);
(d) a template nucleic acid, e.g, a template nucleic acid described herein.
In an embodiment, the kit comprises nucleic acid, e.g., an AAV vector, that encodes one or more of (a), (b), (c)(i), (c)(ii), (c)(iii) and (d).
In another aspect, disclosed herein is non-naturally occurring template nucleic acid described herein.
In yet another aspect, disclosed herein is a gRNA molecule, e.g., a gRNA molecule described herein, for use in treating or preventing POAG in a subject, e.g., in accordance with a method of treating or preventing POAG as described herein.
In an embodiment, the gRNA molecule in used in combination with a Cas9 molecule, e.g., a Cas9 molecule described herein. Additionally or alternatively, in an embodiment, the gRNA molecule is used in combination with a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
In still another aspect, disclosed herein is use of a gRNA molecule, e.g., a gRNA molecule described herein, in the manufacture of a medicament for treating or preventing POAG in a subject, e.g., in accordance with a method of treating or preventing POAG as described herein. In an embodiment, the medicament comprises a Cas9 molecule, e.g., a Cas9 molecule described herein. Additionaly or alternatively, in an embodiment, the medicament comprises a second, third and/or fouth gRNA molecule, e.g., a second, third and/or fouth gRNA molecule described herein.
In an embodiment, the kit further comprises a governing gRNA molecule, or a nucleic acid that encodes a governing gRNA molecule.
In an aspect, the disclosure features a gRNA molecule, referred to herein as a governing gRNA molecule, comprising a targeting domain which is complementary to a target domain on a nucleic acid that encodes a component of the CRISPR/Cas system introduced into a cell or subject. In an embodiment, the governing gRNA molecule targets a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule. In an embodiment, the governing gRNA comprises a targeting domain that is complementary to a target domain in a sequence that encodes a Cas9 component, e.g., a Cas9 molecule or target gene gRNA molecule. In an embodiment, the target domain is designed with, or has, minimal homology to other nucleic acid sequences in the cell, e.g., to minimize off-target cleavage. For example, the targeting domain on the governing gRNA can be selected to reduce or minimize off-target effects. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a Cas9 molecule or disposed between a control region and a transcribed region. In an embodiment, a target domain for a governing gRNA can be disposed in the control or coding region of a target gene gRNA molecule or disposed between a control region and a transcribed region for a target gene gRNA. While not wishing to be bound by theory, it is believed that altering, e.g., inactivating, a nucleic acid that encodes a Cas9 molecule or a nucleic acid that encodes a target gene gRNA molecule can be effected by cleavage of the targeted nucleic acid sequence or by binding of a Cas9 molecule/governing gRNA molecule complex to the targeted nucleic acid sequence.
The gRNA molecules and methods, as disclosed herein, can be used in combination with a governing gRNA molecule. The compositions and reaction mixtures, as disclosed herein, can also include a governing gRNA molecule, e.g., a governing gRNA molecule disclosed herein.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.
Headings, including numeric and alphabetical headings and subheadings, are for organization and presentation and are not intended to be limiting.
Other features and advantages of the invention will be apparent from the detailed description, drawings, and from the claims.
BRIEF DESCRIPTION OF THE DRAWING
Figs. 1A-1I are representations of several exemplary gRNAs.
Fig. 1A depicts a modular gRNA molecule derived in part (or modeled on a sequence in part) from Streptococcus pyogenes (S. pyogenes) as a duplexed structure (SEQ ID NOS: 42 and 43, respectively, in order of appearance);
Fig. IB depicts a unimolecular (or chimeric) gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 44);
Fig. 1C depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45);
Fig. ID depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 46);
Fig. IE depicts a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 47);
Fig. IF depicts a modular gRNA molecule derived in part from Streptococcus thermophilus (S. thermophilus) as a duplexed structure (SEQ ID NOS: 48 and 49, respectively, in order of appearance);
Fig. 1G depicts an alignment of modular gRNA molecules of S. pyogenes and S. thermophilus (SEQ ID NOS: 50-53, respectively, in order of appearance).
Figs. 1H-1I depicts additional exemplary structures of unimolecular gRNA molecules. Fig. 1H shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. pyogenes as a duplexed structure (SEQ ID NO: 45). Fig. II shows an exemplary structure of a unimolecular gRNA molecule derived in part from S. aureus as a duplexed structure (SEQ ID NO: 40).
Figs. 2A-2G depict an alignment of Cas9 sequences from Chylinski et al. (RNA Biol. 2013; 10(5): 726-737). The N-terminal RuvC-like domain is boxed and indicated with a "Y". The other two RuvC-like domains are boxed and indicated with a "B". The HNH-like domain is boxed and indicated by a "G". Sm: S. mutans (SEQ ID NO: 1); Sp: S. pyogenes (SEQ ID NO: 2); St: 5". thermophilus (SEQ ID NO: 3); Li: L. innocua (SEQ ID NO: 4). Motif: this is a motif based on the four sequences: residues conserved in all four sequences are indicated by single letter amino acid abbreviation; "*" indicates any amino acid found in the corresponding position of any of the four sequences; and "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
Figs. 3A-3B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 54-103, respectively, in order of appearance). The last line of Fig. 3B identifies 4 highly conserved residues.
Figs. 4A-4B show an alignment of the N-terminal RuvC-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 104- 177, respectively, in order of appearance). The last line of Fig. 4B identifies 3 highly conserved residues.
Figs. 5A-5C show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al (SEQ ID NOS: 178-252, respectively, in order of appearance). The last line of Fig. 5C identifies conserved residues.
Figs. 6A-6B show an alignment of the HNH-like domain from the Cas9 molecules disclosed in Chylinski et al. with sequence outliers removed (SEQ ID NOS: 253-302, respectively, in order of appearance). The last line of Fig. 6B identifies 3 highly conserved residues.
Figs. 7A-7B depict an alignment of Cas9 sequences from S. pyogenes and Neisseria meningitidis (TV. meningitidis). The N-terminal RuvC-like domain is boxed and indicated with a "Y". The other two RuvC-like domains are boxed and indicated with a "B". The HNH-like domain is boxed and indicated with a "G". Sp: S. pyogenes; Nm: N. meningitidis. Motif: this is a motif based on the two sequences: residues conserved in both sequences are indicated by a single amino acid designation; "*" indicates any amino acid found in the corresponding position of any of the two sequences; "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, and "-" indicates any amino acid, e.g., any of the 20 naturally occurring amino acids, or absent.
Fig. 8 shows a nucleic acid sequence encoding Cas9 of N. meningitidis (SEQ ID NO:
303). Sequence indicated by an "R" is an SV40 NLS; sequence indicated as "G" is an HA tag; and sequence indicated by an "O" is a synthetic NLS sequence; the remaining
(unmarked) sequence is the open reading frame (ORF). Figs. 9A and 9B are schematic representations of the domain organization of S.
pyogenes Cas 9. Fig. 9A shows the organization of the Cas9 domains, including amino acid positions, in reference to the two lobes of Cas9 (recognition (REC) and nuclease (NUC) lobes). Fig. 9B shows the percent homology of each domain across 83 Cas9 orthologs.
Definitions
"Domain", as used herein, is used to describe segments of a protein or nucleic acid. Unless otherwise indicated, a domain is not required to have any specific functional property.
Calculations of homology or sequence identity between two sequences (the terms are used interchangeably herein) are performed as follows. The sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes). The optimal alignment is determined as the best score using the GAP program in the GCG software package with a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of 4, and a frame shift gap penalty of 5. The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, then the molecules are identical at that position. The percent identity between the two sequences is a function of the number of identical positions shared by the sequences.
"Governing gRNA molecule", as used herein, refers to a gRNA molecule that comprises a targeting domain that is complementary to a target domain on a nucleic acid that comprises a sequence that encodes a component of the CRISPR/Cas system that is introduced into a cell or subject. A governing gRNA does not target an endogenous cell or subject sequence. In an embodiment, a governing gRNA molecule comprises a targeting domain that is complementary with a target sequence on: (a) a nucleic acid that encodes a Cas9 molecule; (b) a nucleic acid that encodes a gRNA which comprises a targeting domain that targets the MYOC gene (a target gene gRNA); or on more than one nucleic acid that encodes a
CRISPR/Cas component, e.g., both (a) and (b). In an embodiment, a nucleic acid molecule that encodes a CRISPR/Cas component, e.g., that encodes a Cas9 molecule or a target gene gRNA, comprises more than one target domain that is complementary with a governing gRNA targeting domain. While not wishing to be bound by theory, in an embodiment, it is believed that a governing gRNA molecule complexes with a Cas 9 molecule and results in Cas9 mediated inactivation of the targeted nucleic acid, e.g., by cleavage or by binding to the nucleic acid, and results in cessation or reduction of the production of a CRISPR/Cas system component. In an embodiment, the Cas9 molecule forms two complexes: a complex comprising a Cas9 molecule with a target gene gRNA, which complex will alter the MYOC gene; and a complex comprising a Cas9 molecule with a governing gRNA molecule, which complex will act to prevent further production of a CRISPR/Cas system component, e.g., a Cas9 molecule or a target gene gRNA molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a sequence that encodes a Cas9 molecule, a sequence that encodes a transcribed region, an exon, or an intron, for the Cas9 molecule. In an embodiment, a governing gRNA molecule/Cas9 molecule complex binds to or promotes cleavage of a control region sequence, e.g., a promoter, operably linked to a gRNA molecule, or a sequence that encodes the gRNA molecule. In an embodiment, the governing gRNA, e.g., a Cas9-targeting governing gRNA molecule, or a target gene gRNA-targeting governing gRNA molecule, limits the effect of the Cas9 molecule/target gene gRNA molecule complex- mediated gene targeting. In an embodiment, a governing gRNA places temporal, level of expression, or other limits, on activity of the Cas9 molecule/target gene gRNA molecule complex. In an embodiment, a governing gRNA reduces off-target or other unwanted activity. In an embodiment, a governing gRNA molecule inhibits, e.g., entirely or substantially entirely inhibits, the production of a component of the Cas9 system and thereby limits, or governs, its activity.
"Modulator", as used herein, refers to an entity, e.g., a drug, that can alter the activity (e.g., enzymatic activity, transcriptional activity, or translational activity), amount, distribution, or structure of a subject molecule or genetic sequence. In an embodiment, modulation comprises cleavage, e.g., breaking of a covalent or non-covalent bond, or the forming of a covalent or non-covalent bond, e.g., the attachment of a moiety, to the subject molecule. In an embodiment, a modulator alters the, three dimensional, secondary, tertiary, or quaternary structure, of a subject molecule. A modulator can increase, decrease, initiate, or eliminate a subject activity.
"Large molecule", as used herein, refers to a molecule having a molecular weight of at least 2, 3, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, or 100 kD. Large molecules include proteins, polypeptides, nucleic acids, biologies, and carbohydrates.
"Polypeptide", as used herein, refers to a polymer of amino acids having less than 100 amino acid residues. In an embodiment, it has less than 50, 20, or 10 amino acid residues. "Reference molecule", e.g., a reference Cas9 molecule or reference gRNA, as used herein, refers to a molecule to which a subject molecule, e.g., a subject Cas9 molecule of subject gRNA molecule, e.g., a modified or candidate Cas9 molecule is compared. For example, a Cas9 molecule can be characterized as having no more than 10% of the nuclease activity of a reference Cas9 molecule. Examples of reference Cas9 molecules include naturally occurring unmodified Cas9 molecules, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. aureus or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology with the Cas9 molecule to which it is being compared. In an embodiment, the reference Cas9 molecule is a sequence, e.g., a naturally occurring or known sequence, which is the parental form on which a change, e.g., a mutation has been made.
"Replacement", or "replaced", as used herein with reference to a modification of a molecule does not require a process limitation but merely indicates that the replacement entity is present.
"Small molecule", as used herein, refers to a compound having a molecular weight less than about 2 kD, e.g., less than about 2 kD, less than about 1.5 kD, less than about 1 kD, or less than about 0.75 kD.
"Subject", as used herein, may mean either a human or non-human animal. The term includes, but is not limited to, mammals (e.g., humans, other primates, pigs, rodents (e.g., mice and rats or hamsters), rabbits, guinea pigs, cows, horses, cats, dogs, sheep, and goats).
In an embodiment, the subject is a human. In other embodiments, the subject is poultry.
"Treat", "treating" and "treatment", as used herein, mean the treatment of a disease in a mammal, e.g., in a human, including (a) inhibiting the disease, i.e., arresting or preventing its development; (b) relieving the disease, i.e., causing regression of the disease state; and (c) curing the disease.
"Prevent", "preventing" and "prevention", as used herein, means the prevention of a disease in a mammal, e.g., in a human, including (a) avoiding or precluding the disease; (2) affecting the predisposition toward the disease, e.g., preventing at least one symptom of the disease or to delay onset of at least one symptom of the disease.
"X" as used herein in the context of an amino acid sequence, refers to any amino acid
(e.g., any of the twenty natural amino acids) unless otherwise specified. Primary Open Angel Glaucoma (POAG)
Glaucoma is the second leading cause of blindness in the world. Primary Open Angle Glaucoma (POAG) is the leading cause of glaucoma and affects approximately 1% of patients ages 40-89.
POAG develops due to an imbalance between the production and outflow of aqueous humor within the eye. Aqueous humor (AH) is produced by the ciliary body located in the posterior chamber. The vast majority (approximately 80%) of AH drains through the trabecular meshwork (TM) to the episcleral venous system. A minority (approximately 20%) of AH drains through the interstitium between the iris root and ciliary muscle (Feisal 2005). POAG is likely due to decreased drainage through the trabecular meshwork; decreased outflow of AH results in increased intraocular pressure (IOP) and IOP causes damage to the optic nerve and leads to progressive blindness.
The etiology of POAG is multi-factorial and complex. However, mutations in the MYOC gene (also known as GLC1A, JOAG1 and TIGR) have been shown to be a leading genetic cause of POAG and of juvenile-onset POAG. Mutations in MYOC have been shown to account for 3% of POAG. Many patients with MYOC mutations develop rapidly advancing disease and/or earlier presentation of POAG, including juvenile-onset POAG.
The MYOC gene, also called the trabecular meshwork-induced glucocorticoid receptor (TIGR), encodes myocilin, a 504 amino acid protein encoded by 3 exons. Myocilin is found in the trabecular meshwork and plays a role in cytoskeletal function and in the regulation of IOP.
Methods to Treat or Prevent POAG
Methods and compositions described herein provide for a therapy, e.g., a one-time therapy, or a multi-dose therapy, that prevents or treats primary open-angle glaucoma (POAG). In an embodiment, a disclosed therapy prevents, inhibits, or reduces the production of mutant myocilin protein in cells of the anterior and posterior chamber of the eye in a subject who has POAG.
While not wishing to be bound by theory, in an embodiment, it is believed that knocking out MYOC on ciliary body cells, iris cells, trabecular meshwork cells, retinal cells, e.g. e.g., a rod photoreceptor cell, e.g., a cone photoreceptor cell, e.g., a retinal pigment epithelium cell, e.g., a horizontal cell, e.g., an amacrine cell, e.g., a ganglion cell, will prevent the progression of eye disease in subjects with POAG. While not wishing to be bound by theory, in an embodiment, it is believed that correction of MYOC in ciliary body cells, iris cells, trabecular meshwork cells, retinal cells, e.g. e.g., a rod photoreceptor cell, e.g., a cone photoreceptor cell, e.g., a retinal pigment epithelium cell, e.g., a horizontal cell, e.g., an amacrine cell, e.g., a ganglion cell, will prevent the progression of eye disease in subjects with POAG. Corrected cells will not undergo apoptosis, will not cause inflammation and will produce wild-type, non- aggregating myocilin. In an embodiment, the disease is cured, does not progress or has delayed progression compared to a subject who has not received the therapy.
Myocilin is expressed in the eye, primarily by trabecular meshwork cells and the ciliary body. It is also expressed in the retina. Research indicates that MYOC mutations exert a toxic gain of function effect within trabecular meshwork cells. Mutant myocilin, especially mutants with missense or nonsense mutations in exon 3, e.g., a mutation at T377 (e.g., T377R), a mutation at 1477 (e.g., I477N), or a mutation at P370 (e.g., P370L), may misfold and aggregate in the endoplasmic reticulum (ER). Misfolding and aggregation within the ER elicits the ER stress and unfold protein response, which can lead to apoptosis and
inflammation within trabecular meshwork cells. In addition, mutant myocilin protein may aggregate in the trabecular meshwork with other mutant proteins and/or with wild-type myocilin (in heterozygotes). Mutant myocilin aggregates may interfere with the outflow of aqueous humor to the episcleral venous system. Decreased aqueous humor outflow causes increased intraocular pressure, leading to POAG.
The elimination of mutant myocilin production in subjects with a mutation, e.g., a mutation at T377 (e.g., T377R), a mutation at 1477 (e.g., I477N), or a mutation at P370 (e.g., P370L) mutations or other mutant MYOC alleles through knock out of MYOC on ciliary body cells, iris cells, trabecular meshwork cells and retinal cells will prevent the production of the myocilin proteins. Corrected cells will not undergo apoptosis and will not increase inflammation. In an embodiment, POAG does not progress or has delayed progression compared to a subject who has not received the therapy.
Described herein are methods for treating or delaying the onset or progression of POAG caused by mutations in the MYOC gene, including but not limited to mutations in exon 3, e.g., a mutation at T377 (e.g.,T377R), a mutation at 1477 (e.g., I477N), or a mutation at P370 (e.g., P370L). The disclosed methods for treating or delaying the onset or progression of POAG alter the MYOC gene by genome editing using a gRNA targeting the POAG target position and a Cas9 enzyme. Details on gRNAs targeting the POAG target position and Cas9 enzymes are provided below. Current treatments to prevent the progression of POAG include treatments that reduce IOP. For example, trabeculectomy surgery and eye drops, including alpha-adregergic antagonists and beta-adrenergic antagonists, are both effective in preventing POAG progression. However, further treatments are needed to reduce IOP and prevent progression of POAG. Disclosed herein are methods that correct the underlying mutations that lead to POAG. Also disclosed herein are methods that knockdown or knockout a MYOC gene. Targeted knockdown or knockout of the MYOC gene includes targeting one or both alleles of the MYOC gene. The disclosed methods may be useful to permanently decrease IOP and prevent the progressive visual loss of POAG. Further, the disclosed methods are more convenient than taking daily eye drops or having surgery.
Disclosed herein are multiple approaches to altering or modifying, i.e., correcting, the MYOC gene, using the CRIPSR/Cas system to treat POAG.
In an embodiment, one approach is to repair (i.e., correct) one or more mutations in the MYOC gene by HDR. In an embodiment, mutant MYOC allele(s) are corrected and restored to wild type state, which preserves myocilin function, restores homeostasis within the TM and preserves IOP, which reverses or prevents progression of POAG.
In another embodiment, the MYOC gene is targeted as a targeted knockout or knockdown. A knockout or knockdown of the MYOC gene may offer a benefit to subjects with POAG who have a mutation in the MYOC gene as well as subjects with POAG without a known MYOC mutation. There is evidence that MYOC mutations are gain of function mutations leading to altered TM function and the development of IOP. There is further evidence that patients with heterozygous early truncating mutations (Arg46stop) do not develop disease. MYOC knock-out mice do not develop POAG and have no detected eye abnormalities. Further, a few patients have been identified who express no myocilin in the eye and have no phenotype. Without wishing to be bound by theory, it is contemplated herein that a knock out or knock down of MYOC gene in the eye prevents the development of POAG.
There is also evidence to support a dominant negative effect of certain heterozygous mutations on the wild-type allele (Kuchtey J et al., 2013 Eur J Med Genet.b56(6):292-6. doi: 10.1016/j.ejmg.2013.03.002. Epub 2013 Mar 19). Without wishing to be bound by theory, it is contemplated herein that a knockout of both alleles reverses the dominant negative effect and is beneficial for patients. Correction of a mutation in the MYOC gene or knockdown or knockout of one or both MYOC alleles may be performed prior to disease onset or after disease onset, but preferably early in the disease course.
In an embodiment, treatment is initiated prior to onset of the disease.
In an embodiment, treatment is initiated after onset of the disease, but early in the course of disease progression (e.g., prior to vision loss, a decrease in visual acuity and/or an increase in IOP).
In an embodiment, treatment is initiated after onset of the disease, but prior to a measurable increase in IOP.
In an embodiment, treatment is initiated prior to loss of visual acuity.
In an embodiment, treatment is initiated at onset of loss of visual acuity.
In an embodiment, treatment is initiated after onset of loss of visual acuity.
In an embodiment, treatment is initiated in a subject who has tested positive for a mutation in the MYOC gene, e.g., prior to disease onset or in the earliest stages of disease.
In an embodiment, a subject has a family member that has been diagnosed with
POAG. For example, the subject has a family member that has been diagnosed with POAG, and the subject demonstrates a symptom or sign of the disease or has been found to have a mutation in the MYOC gene.
In an embodiment, treatment is initiated in a subject who has no MYOC mutation but has increased intraocular pressure.
In an embodiment, treatment is initiated in a subject at onset of an increase in intraocular pressure.
In an embodiment, treatment is initiated in a subject after onset of an increase in intraocular pressure.
In an embodiment, treatment is initiated in a subject with signs consistent with POAG on ophthalmologic exam, including but not limited to: increased intraocular pressure; cupping of the optic nerve on slit lamp exam, stereobiomicroscopy or ophthalmoscopy; pallor of the optic disk; thinning or notching of the optic disk rim; hemorrhages of the optic disc; vertical cup-to-disk ratio of >0.6 or cup-to-disk asymmetry between eyes of greater than 0.2;
peripapillary atrophy.
A subject's vision can evaluated, e.g., prior to treatment, or after treatment, e.g., to monitor the progress of the treatment. In an embodiment, the subject's vision is evaluated prior to treatment, e.g., to determine the need for treatment. In an embodiment, the subject's vision is evaluated after treatment has been initiated, e.g., to access the effectiveness of the treatment. Vision can be evaluated by one or more of: evaluation of increased IOP;
evaluating changes in function relative to the contralateral eye, e.g., by utilizing retinal analytical techniques; by evaluating mean, median and distribution of change in best corrected visual acuity (BCVA); evaluation by Optical Coherence Tomography; evaluation of changes in visual field using perimetry; evaluation by full-field electroretinography (ERG); evaluation by slit lamp examination; evaluation of intraocular pressure; evaluation of autofluorescence, evaluation with fundoscopy; evaluation with fundus photography;
evaluation with fluorescein angiography (FA); or evaluation of visual field sensitivity (FFST).
In other embodiments, a subject's vision may be assessed by measuring the subject's mobility, e.g., the subject's ability to maneuver in space.
Methods of Altering MYOC
As disclosed herein, a POAG target position, e.g., MYOC gene, can be altered by gene editing, e.g., using CRISPR-Cas9 mediated methods as described herein.
An alteration of the MYOC gene can be mediated by any mechanism. Exemplary mechanisms that can be associated with an alteration of the MYOC gene include, but are not limited to, non-homologous end joining (e.g., classical or alternative), microhomology- mediated end joining (MMEJ), homology-directed repair (e.g., endogenous donor template mediated), SDSA (synthesis dependent strand annealing), single strand annealing or single strand invasion.
In an embodiment, altering the POAG target position is achieved, e.g., by:
(1) correcting a POAG target position (e.g., a point mutation) in the MYOC gene (e.g., HDR- mediated correction with a donor template that corrects the mutation, e.g., the point mutation);
(2) knocking out the MYOC gene:
(a) insertion or deletion (e.g., NHEJ-mediated insertion or deletion) of one or more nucleotides in close proximity to or within an early coding region of the MYOC gene, or
(b) deletion (e.g., NHEJ-mediated deletion) of genomic sequence including a
POAG knockout target position of the MYOC gene, or
(3) knocking down the MYOC gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of the gene. All approaches give rise to alteration of the MYOC gene. In one embodiment, methods described herein introduce one or more breaks near a POAG target position in at least one allele of the MYOC gene. In another embodiment, methods described herein introduce two or more breaks to flank a POAG target position, e.g., POAG knockout target position or a point mutation in the MYOC gene. The two or more breaks remove (e.g., delete) genomic sequence including the POAG target position, e.g., POAG knockout target position or point mutation in the MYOC gene. In another embodiment, methods described herein comprises knocking down the MYOC gene mediated by enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of a POAG
knockdown target position. All methods described herein result in alteration of the MYOC gene.
HDR-mediated repair of MYOC
The methods and compositions described herein introduce one or more breaks near a POAG target position, e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region in the MYOC gene. In an embodiment, a mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region the substitution T377R), or 1477 (e.g., the substitution I477N or I477S) is targeted by cleaving with either one or more nucleases, one or more nickases or any combination thereof to induce HDR with a donor template that corrects the point mutation (e.g., the single nucleotide, e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477- 502 mutation hotspot region. The method can include acquiring knowledge of the mutation carried by the subject, e.g., by sequencing the appropriate portion of the MYOC gene.
In an embodiment, guide RNAs were designed to target a mutation (e.g., Q368 (e.g.,
Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477- 502 mutation hotspot region) in the MYOC gene. A single gRNA with a Cas9 nuclease or a Cas9 nickase could be used to generate a break (e.g., a single strand break or a double strand break) in close proximity to a mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region).
While not bound by theory, in an embodiment, it is believed that HDR-mediated repair (e.g., with a donor template) of the break (e.g., a single strand break or a double strand break) allow for the correction of the mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region),which results in restoration of a functional MYOC protein.
In another embodiment, two gRNAs with two Cas9 nickases could be used to generate two single strand breaks in close proximity to a mutation (e.g., Q368 (e.g.,
Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477- 502 mutation hotspot region). While not bound by theory, in an embodiment, it is believed that HDR-mediated repair (e.g., with a donor template) of the breaks (e.g., the two single strand breaks) allow for the correction of the mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region), which results in restoration of a functional MYOC protein.
In another embodiment, more than two gRNAs may be used in a dual-targeting approach to generate two sets of breaks (e.g., two double strand breaks, one double strand break and a pair of single strand breaks or two pairs of single strand breaks) in close proximity to a mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region)or delete a genomic sequence containing a mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region)in the MYOC gene. While not bound by theory, in an embodiment, it is believed that HDR-mediated repair (e.g., with a donor template) of the breaks (e.g., two double strand breaks, one double strand break and a pair of single strand breaks or two pairs of single strand breaks) allow for the correction of the mutation (e.g., Q368 (e.g., Q368stop), P370 (e.g., P370L), T377 (e.g., T377R), 1477 (e.g., I477N or I477S) or the 477-502 mutation hotspot region),which results in restoration of a functional MYOC protein.
In an embodiment, a single strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, a single gRNA molecule (e.g., with a Cas9 nickase) is used to create a single strand break at or in close proximity to the POAG target position, e.g., the gRNA is configured such that the single strand break is positioned either upstream (e.g., within 200 bp upstream) or downstream (e.g., within 200 bp downstream) of the POAG target position. In an embodiment, the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, a double strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, a single gRNA molecule (e.g., with a Cas9 nuclease other than a Cas9 nickase) is used to create a double strand break at or in close proximity to the POAG target position, e.g., the gRNA molecule is configured such that the double strand break is positioned either upstream (e.g., within 200 bp upstream) or downstream of (e.g., within 200 bp downstream) of a POAG target position. In an embodiment, the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, two single strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, two gRNA molecules (e.g., with one or two Cas9 nickcases) are used to create two single strand breaks at or in close proximity to the POAG target position, e.g., the gRNAs molecules are configured such that both of the single strand breaks are positioned upstream (e.g., within 200 bp upstream) or downstream (e.g., within 200 bp downstream) of the POAG target position. In another embodiment, two gRNA molecules (e.g., with two Cas9 nickcases) are used to create two single strand breaks at or in close proximity to the POAG target position, e.g., the gRNAs molecules are configured such that one single strand break is positioned upstream (e.g., within 200 bp upstream) and a second single strand break is positioned downstream (e.g., within 200 bp downstream) of the POAG target position. In an embodiment, the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, two double strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, two gRNA molecules (e.g., with one or two Cas9 nucleases that are not Cas9 nickases) are used to create two double strand breaks to flank a POAG target position, e.g., the gRNA molecules are configured such that one double strand break is positioned upstream (e.g., within 200 bp upstream) and a second double strand break is positioned downstream (e.g., within 200 bp downstream) of the POAG target position. In an embodiment, the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, one double strand break and two single strand breaks are introduced (e.g., positioned by three gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, three gRNA molecules (e.g., with a Cas9 nuclease other than a Cas9 nickase and one or two Cas9 nickases) to create one double strand break and two single strand breaks to flank a POAG target position, e.g., the gRNA molecules are configured such that the double strand break is positioned upstream or downstream of (e.g., within 200 bp upstream or downstream) of the POAG target position, and the two single strand breaks are positioned at the opposite site, e.g., downstream or upstream (within 200 bp downstream or upstream), of the POAG target position. In an embodiment, the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, four single strand breaks are introduced (e.g., positioned by four gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, four gRNA molecule (e.g., with one or more Cas9 nickases are used to create four single strand breaks to flank a POAG target position in the MYOC gene, e.g., the gRNA molecules are configured such that a first and second single strand breaks are positioned upstream (e.g., within 200 bp upstream) of the POAG target position, and a third and a fourth single stranded breaks are positioned downstream (e.g., within 200 bp downstream) of the POAG target position. In an embodiment, the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, two or more (e.g., three or four) gRNA molecules are used with one Cas9 molecule. In another embodiment, when two or more (e.g., three or four) gRNAs are used with two or more Cas9 molecules, at least one Cas9 molecule is from a different species than the other Cas9 molecule(s). For example, when two gRNA molecules are used with two Cas9 molecules, one Cas9 molecule can be from one species and the other Cas9 molecule can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
NHEJ-mediated introduction of an indel in close proximity to or within the early coding region of the POAG target knockout position
In an embodiment, the method comprises introducing a NHEJ-mediated insertion or deletion of one more nucleotides in close proximity to the POAG target knockout position (e.g., the early coding region) of the MYOC gene. As described herein, in one embodiment, the method comprises the introduction of one or more breaks (e.g., single strand breaks or double strand breaks) sufficiently close to (e.g., either 5' or 3' to) the early coding region of the POAG knockout target position, such that the break-induced indel could be reasonably expected to span the POAG target knockout position (e.g., the early coding region). While not wishing to be bound by theory, it is believed that NHEJ-mediated repair of the break(s) allows for the NHEJ-mediated introduction of an indel in close proximity to within the early coding region of the POAG target knockout position. In an embodiment, the targeting domain of the gRNA molecule is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the MYOC gene to allow alteration, e.g., alteration associated with NHEJ in the MYOC gene. In an embodiment, the targeting domain is configured such that a cleavage event, e.g., a double strand or single strand break, is positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of a POAG target knockout position. The break, e.g., a double strand or single strand break, can be positioned upstream or downstream of a POAG target knockout position in the MYOC gene.
In an embodiment, a second gRNA molecule comprising a second targeting domain is configured to provide a cleavage event, e.g., a double strand break or a single strand break, sufficiently close to the early coding region in the MYOC gene, to allow alteration, e.g., alteration associated with NHEJ in the MYOC gene, either alone or in combination with the break positioned by said first gRNA molecule. In an embodiment, the targeting domains of the first and second gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules, within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on both sides of a nucleotide of a POAG target knockout position in the MYOC gene. In an embodiment, the breaks, e.g., double strand or single strand breaks, are positioned on one side, e.g., upstream or downstream, of a nucleotide of a POAG target knockout position in the MYOC gene.
In an embodiment, a single strand break is accompanied by an additional single strand break, positioned by a second gRNA molecule, as discussed below. For example, the targeting domains are configured such that a cleavage event, e.g., the two single strand breaks, are positioned within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the MYOC gene. In an embodiment, the first and second gRNA molecules are configured such, that when guiding a Cas9 nickase, a single strand break will be accompanied by an additional single strand break, positioned by a second gRNA, sufficiently close to one another to result in alteration of the early coding region in the MYOC gene. In an embodiment, the first and second gRNA molecules are configured such that a single strand break positioned by said second gRNA is within 10, 20, 30, 40, or 50 nucleotides of the break positioned by said first gRNA molecule, e.g., when the Cas9 molecule is a nickase. In an embodiment, the two gRNA molecules are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, e.g., essentially mimicking a double strand break.
In an embodiment, a double strand break can be accompanied by an additional double strand break, positioned by a second gRNA molecule, as is discussed below. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domain of a second gRNA molecule is configured such that a double strand break is positioned downstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position.
In an embodiment, a double strand break can be accompanied by two additional single strand breaks, positioned by a second gRNA molecule and a third gRNA molecule. For example, the targeting domain of a first gRNA molecule is configured such that a double strand break is positioned upstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position; and the targeting domains of a second and third gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the target position. In an embodiment, the targeting domain of the first, second and third gRNA molecules are configured such that a cleavage event, e.g., a double strand or single strand break, is positioned, independently for each of the gRNA molecules.
In an embodiment, a first and second single strand breaks can be accompanied by two additional single strand breaks positioned by a third gRNA molecule and a fourth gRNA molecule. For example, the targeting domain of a first and second gRNA molecule are configured such that two single strand breaks are positioned upstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the MYOC gene; and the targeting domains of a third and fourth gRNA molecule are configured such that two single strand breaks are positioned downstream of the early coding region in the MYOC gene, e.g., within 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 350, 400, 450 or 500 nucleotides of the early coding region in the MYOC gene.
In an embodiment, a single strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, a single gRNA molecule (e.g., with a Cas9 nickase) is used to create a single strand break at or in close proximity to the POAG target position, e.g., the gRNA is configured such that the single strand break is positioned either upstream (e.g., within 500 bp upstream) or downstream (e.g., within 500 bp downstream) of the POAG target position. In an embodiment, the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, a double strand break is introduced (e.g., positioned by one gRNA molecule) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, a single gRNA molecule (e.g., with a Cas9 nuclease other than a Cas9 nickase) is used to create a double strand break at or in close proximity to the POAG target position, e.g., the gRNA molecule is configured such that the double strand break is positioned either upstream (e.g., within 500 bp upstream) or downstream of (e.g., within 500 bp downstream) of a POAG target position. In an embodiment, the break is positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, two single strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, two gRNA molecules (e.g., with one or two Cas9 nickcases) are used to create two single strand breaks at or in close proximity to the POAG target position, e.g., the gRNAs molecules are configured such that both of the single strand breaks are positioned upstream (e.g., within 500 bp upstream) or downstream (e.g., within 500 bp downstream) of the POAG target position. In another embodiment, two gRNA molecules (e.g., with two Cas9 nickcases) are used to create two single strand breaks at or in close proximity to the POAG target position, e.g., the gRNAs molecules are configured such that one single strand break is positioned upstream (e.g., within 500 bp upstream) and a second single strand break is positioned downstream (e.g., within 500 bp downstream) of the POAG target position. In an embodiment, the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, two double strand breaks are introduced (e.g., positioned by two gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, two gRNA molecules (e.g., with one or two Cas9 nucleases that are not Cas9 nickases) are used to create two double strand breaks to flank a POAG target position, e.g., the gRNA molecules are configured such that one double strand break is positioned upstream (e.g., within 500 bp upstream) and a second double strand break is positioned downstream (e.g., within 500 bp downstream) of the POAG target position. In an embodiment, the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
In an embodiment, one double strand break and two single strand breaks are introduced (e.g., positioned by three gRNA molecules) at or in close proximity to a POAG target position in the MYOC gene. In an embodiment, three gRNA molecules (e.g., with a Cas9 nuclease other than a Cas9 nickase and one or two Cas9 nickases) to create one double strand break and two single strand breaks to flank a POAG target position, e.g., the gRNA molecules are configured such that the double strand break is positioned upstream or downstream of (e.g., within 500 bp upstream or downstream) of the POAG target position, and the two single strand breaks are positioned at the opposite site, e.g., downstream or upstream (within 500 bp downstream or upstream), of the POAG target position. In an embodiment, the breaks are positioned to avoid unwanted target chromosome elements, such as repeat elements, e.g., an Alu repeat.
Knocking down the MYOC gene mediated by an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9-fusion protein by targeting the promoter region of the gene.
A targeted knockdown approach reduces or eliminates expression of functional MYOC gene product. As described herein, in an embodiment, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) molecule or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the MYOC gene.
Methods and compositions discussed herein may be used to alter the expression of the MYOC gene to treat or prevent POAG by targeting a promoter region of the MYOC gene. In an embodiment, the promoter region, e.g., at least 2 kb, at least 1.5 kb, at least 1.0 kb, or at least 0.5 kb upstream or downstream of the transcription start site (TSS) is targeted to knockdown expression of the MYOC gene. In an embodiment, the methods and compositions discussed herein may be used to knock down the MYOC gene to treat or prevent BT by targeting 0.5 kb upstream or downstream of the TSS. A targeted knockdown approach reduces or eliminates expression of functional MYOC gene product. As described herein, in an embodiment, a targeted knockdown is mediated by targeting an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fused to a transcription repressor domain or chromatin modifying protein to alter transcription, e.g., to block, reduce, or decrease transcription, of the MYOC gene. In an embodiment, one or more eiCas9 molecules may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 molecule can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. One or more eiCas9 molecules fused to one or more chromatin modifying proteins may be used to alter chromatin status
While some of the disclosure herein is presented in the context of the mutation in the MYOC gene that gives rise to an T377 mutant protein (e.g., T377R mutant protein) or a 1477 mutant protein (e.g., I477N mutant protein, e.g., I477S mutant protein) or a P370 mutant protein (e.g., P370L mutant protein), the methods and compositions herein are broadly applicable to any mutation, e.g., a point mutation or a nonsense mutation or a deletion mutation, in the MYOC gene that gives rise to POAG. I. gRNA Molecules
A gRNA molecule, as that term is used herein, refers to a nucleic acid that promotes the specific targeting or homing of a gRNA molecule/Cas9 molecule complex to a target nucleic acid. gRNA molecules can be unimolecular (having a single RNA molecule), sometimes referred to herein as "chimeric" gRNAs, or modular (comprising more than one, and typically two, separate RNA molecules). A gRNA molecule comprises a number of domains. The gRNA molecule domains are described in more detail below.
Several exemplary gRNA structures, with domains indicated thereon, are provided in Figs. 1A-1G. While not wishing to be bound by theory, in an embodiment, with regard to the three dimensional form, or intra- or inter-strand interactions of an active form of a gRNA, regions of high complementarity are sometimes shown as duplexes in Figs. 1A-1G and other depictions provided herein.
In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5' to 3' :
a targeting domain (which is complementary to a target nucleic acid in the MYOC gene, e.g., a targeting domain from any of 1A-1E, 2A-2E, 3A-3E, 4A-
4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B);
a first complementarity domain; a linking domain;
a second complementarity domain (which is complementary to the first
complementarity domain);
a proximal domain; and
optionally, a tail domain.
In an embodiment, a modular gRNA comprises:
a first strand comprising, preferably from 5' to 3' ;
a targeting domain (which is complementary to a target nucleic acid in the MYOC gene, e.g., a targeting domain from 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A- 6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B); and a first complementarity domain; and
a second strand, comprising, preferably from 5 ' to 3 ' :
optionally, a 5' extension domain;
a second complementarity domain;
a proximal domain; and
optionally, a tail domain.
The domains are discussed briefly below.
The Targeting Domain
Figs. 1A-1G provide examples of the placement of targeting domains.
The targeting domain comprises a nucleotide sequence that is complementary, e.g., at least 80, 85, 90, or 95% complementary, e.g., fully complementary, to the target sequence on the target nucleic acid. The targeting domain is part of an RNA molecule and will therefore comprise the base uracil (U), while any DNA encoding the gRNA molecule will comprise the base thymine (T). While not wishing to be bound by theory, in an embodiment, it is believed that the complementarity of the targeting domain with the target sequence contributes to specificity of the interaction of the gRNA molecule/Cas9 molecule complex with a target nucleic acid. It is understood that in a targeting domain and target sequence pair, the uracil bases in the targeting domain will pair with the adenine bases in the target sequence. In an embodiment, the target domain itself comprises in the 5' to 3' direction, an optional secondary domain, and a core domain. In an embodiment, the core domain is fully complementary with the target sequence. In an embodiment, the targeting domain is 5 to 50 nucleotides in length. The strand of the target nucleic acid with which the targeting domain is complementary is referred to herein as the complementary strand. Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
In an embodiment, the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
Targeting domains are discussed in more detail below.
The First Complementarity Domain
Figs. 1A-1G provide examples of first complementarity domains.
The first complementarity domain is complementary with the second
complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an embodiment, the first complementarity domain is 5 to 30 nucleotides in length. In an embodiment, the first complementarity domain is 5 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 25 nucleotides in length. In an embodiment, the first complementary domain is 7 to 22 nucleotides in length. In an embodiment, the first complementary domain is 7 to 18 nucleotides in length. In an embodiment, the first complementary domain is 7 to 15 nucleotides in length. In an embodiment, the first complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
In an embodiment, the first complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain. In an embodiment, the 5' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length. In an embodiment, the central subdomain is 1, 2, or 3, e.g., 1, nucleotide in length. In an embodiment, the 3' subdomain is 3 to 25, e.g., 4 to 22, 4 to 18, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length.
The first complementarity domain can share homology with, or be derived from, a naturally occurring first complementarity domain. In an embodiment, it has at least 50% homology with a first complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
First complementarity domains are discussed in more detail below.
The Linking Domain
Figs. 1A-1G provide examples of linking domains.
A linking domain serves to link the first complementarity domain with the second complementarity domain of a unimolecular gRNA. The linking domain can link the first and second complementarity domains covalently or non-covalently. In an embodiment, the linkage is covalent. In an embodiment, the linking domain covalently couples the first and second complementarity domains, see, e.g., Figs. IB-IE. In an embodiment, the linking domain is, or comprises, a covalent bond interposed between the first complementarity domain and the second complementarity domain. Typically the linking domain comprises one or more, e.g., 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides.
In modular gRNA molecules the two molecules are associated by virtue of the hybridization of the complementarity domains see e.g., Fig. 1A. A wide variety of linking domains are suitable for use in unimolecular gRNA molecules. Linking domains can consist of a covalent bond, or be as short as one or a few nucleotides, e.g., 1, 2, 3, 4, or 5 nucleotides in length. In an embodiment, a linking domain is 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25 or more nucleotides in length. In an embodiment, a linking domain is 2 to 50, 2 to 40, 2 to 30, 2 to 20, 2 to 10, or 2 to 5 nucleotides in length. In an embodiment, a linking domain shares homology with, or is derived from, a naturally occurring sequence, e.g., the sequence of a tracrRNA that is 5' to the second complementarity domain. In an embodiment, the linking domain has at least 50% homology with a linking domain disclosed herein.
Some or all of the nucleotides of the domain can have a modification, e.g., modification found in Section VIII herein.
Linking domains are discussed in more detail below.
The 5 ' Extension Domain
In an embodiment, a modular gRNA can comprise additional sequence, 5' to the second complementarity domain, referred to herein as the 5' extension domain, see, e.g., Fig. 1A. In an embodiment, the 5' extension domain is, 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, 2 to 4 nucleotides in length. In an embodiment, the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
The Second Complementarity Domain
Figs. 1A-1G provide examples of second complementarity domains.
The second complementarity domain is complementary with the first
complementarity domain, and in an embodiment, has sufficient complementarity to the second complementarity domain to form a duplexed region under at least some physiological conditions. In an embodiment, e.g., as shown in Figs. 1A-1B, the second complementarity domain can include sequence that lacks complementarity with the first complementarity domain, e.g., sequence that loops out from the duplexed region.
In an embodiment, the second complementarity domain is 5 to 27 nucleotides in length. In an embodiment, it is longer than the first complementarity region. In an embodiment the second complementary domain is 7 to 27 nucleotides in length. In an embodiment, the second complementary domain is 7 to 25 nucleotides in length. In an embodiment, the second complementary domain is 7 to 20 nucleotides in length. In an embodiment, the second complementary domain is 7 to 17 nucleotides in length. In an embodiment, the complementary domain is 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24 or 25 nucleotides in length.
In an embodiment, the second complementarity domain comprises 3 subdomains, which, in the 5' to 3' direction are: a 5' subdomain, a central subdomain, and a 3' subdomain. In an embodiment, the 5' subdomain is 3 to 25, e.g., 4 to 22, 4 tol8, or 4 to 10, or 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length. In an embodiment, the central subdomain is 1, 2, 3, 4 or 5, e.g., 3, nucleotides in length. In an embodiment, the 3' subdomain is 4 to 9, e.g., 4, 5, 6, 7, 8 or 9 nucleotides in length.
In an embodiment, the 5 ' subdomain and the 3 ' subdomain of the first
complementarity domain, are respectively, complementary, e.g., fully complementary, with the 3' subdomain and the 5' subdomain of the second complementarity domain.
The second complementarity domain can share homology with or be derived from a naturally occurring second complementarity domain. In an embodiment, it has at least 50% homology with a second complementarity domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
A Proximal domain
Figs. 1A-1G provide examples of proximal domains.
In an embodiment, the proximal domain is 5 to 20 nucleotides in length. In an embodiment, the proximal domain can share homology with or be derived from a naturally occurring proximal domain. In an embodiment, it has at least 50% homology with a proximal domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain.
Some or all of the nucleotides of the domain can have a modification, e.g., a modification found in Section VIII herein.
A Tail Domain
Figs. 1A-1G provide examples of tail domains.
As can be seen by inspection of the tail domains in Figs. 1A-1E, a broad spectrum of tail domains are suitable for use in gRNA molecules. In an embodiment, the tail domain is 0 (absent), 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In embodiment, the tail domain nucleotides are from or share homology with sequence from the 5 ' end of a naturally occurring tail domain, see e.g., Fig. ID or Fig. IE. In an embodiment, the tail domain includes sequences that are complementary to each other and which, under at least some physiological conditions, form a duplexed region.
In an embodiment, the tail domain is absent or is 1 to 50 nucleotides in length. In an embodiment, the tail domain can share homology with or be derived from a naturally occurring proximal tail domain. In an embodiment, it has at least 50% homology with a tail domain disclosed herein, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain.
In an embodiment, the tail domain includes nucleotides at the 3' end that are related to the method of in vitro or in vivo transcription. When a T7 promoter is used for in vitro transcription of the gRNA, these nucleotides may be any nucleotides present before the 3 ' end of the DNA template. When a U6 promoter is used for in vivo transcription, these nucleotides may be the sequence UUUUUU. When alternate pol-III promoters are used, these nucleotides may be various numbers or uracil bases or may include alternate bases.
The domains of gRNA molecules are described in more detail below.
The Targeting Domain
The "targeting domain" of the gRNA is complementary to the "target domain" on the target nucleic acid. The strand of the target nucleic acid comprising the nucleotide sequence complementary to the core domain of the gRNA is referred to herein as the "complementary strand" of the target nucleic acid. Guidance on the selection of targeting domains can be found, e.g., in Fu Y et al., Nat Biotechnol 2014 (doi: 10.1038/nbt.2808) and Sternberg SH et al., Nature 2014 (doi: 10.1038/naturel3011).
In an embodiment, the targeting domain is 16, 17, 18, 19, 20, 21, 22
nucleotides in length.
In an embodiment, the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain is 25 nucleotides in length. In an embodiment, the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises 16 nucleotides.
In an embodiment, the targeting domain comprises 17 nucleotides.
In an embodiment, the targeting domain comprises 18 nucleotides.
In an embodiment, the targeting domain comprises 19 nucleotides.
In an embodiment, the targeting domain comprises 20 nucleotides.
In an embodiment, the targeting domain comprises 21 nucleotides.
In an embodiment, the targeting domain comprises 22 nucleotides.
In an embodiment, the targeting domain comprises 23 nucleotides.
In an embodiment, the targeting domain comprises 24 nucleotides.
In an embodiment, the targeting domain comprises 25 nucleotides.
In an embodiment, the targeting domain comprises 26 nucleotides.
In an embodiment, the targeting domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5,
60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the targeting domain is 20+/-5 nucleotides in length.
In an embodiment, the targeting domain is 20+/- 10, 30+/- 10, 40+/- 10, 50+/- 10, 60+/- 10, 70+/-10, 80+/-10, 90+/-10, or 100+/- 10 nucleotides, in length.
In an embodiment, the targeting domain is 30+/- 10 nucleotides in length.
In an embodiment, the targeting domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length. In another embodiment, the targeting domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
Typically the targeting domain has full complementarity with the target sequence. In an embodiment, the targeting domain has or includes 1, 2, 3, 4, 5, 6, 7 or 8 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain.
In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, 4 or 5 nucleotides that are complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3 ' end.
In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 5' end. In an embodiment, the target domain includes 1, 2, 3, or 4 nucleotides that are not complementary with the corresponding nucleotide of the targeting domain within 5 nucleotides of its 3 ' end.
In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the targeting domain comprises two consecutive nucleotides that are not complementary to the target domain ("non-complementary nucleotides"), e.g., two consecutive noncomplementary nucleotides that are within 5 nucleotides of the 5 ' end of the targeting domain, within 5 nucleotides of the 3 ' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, no two consecutive nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3 ' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain, are not complementary to the targeting domain.
In an embodiment, there are no noncomplementary nucleotides within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
In an embodiment, the targeting domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the targeting domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the targeting domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment, a nucleotide of the targeting domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the targeting domain includes 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the targeting domain includes 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the targeting domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the targeting domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3 ' end of the targeting domain, or more than 5 nucleotides away from one or both ends of the targeting domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5 ' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the targeting domain, within 5 nucleotides of the 3' end of the targeting domain, or within a region that is more than 5 nucleotides away from one or both ends of the targeting domain.
Modifications in the targeting domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate targeting domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in a system in Section IV. The candidate targeting domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, all of the modified nucleotides are complementary to and capable of hybridizing to corresponding nucleotides present in the target domain. In another embodiment, 1 , 2, 3, 4, 5, 6, 7 or 8 or more modified nucleotides are not complementary to or capable of hybridizing to corresponding nucleotides present in the target domain.
In an embodiment, the targeting domain comprises, preferably in the 5'→3' direction: a secondary domain and a core domain. These domains are discussed in more detail below.
The Core Domain and Secondary Domain of the Targeting Domain
The "core domain" of the targeting domain is complementary to the "core domain target" on the target nucleic acid. In an embodiment, the core domain comprises about 8 to about 13 nucleotides from the 3 ' end of the targeting domain (e.g., the most 3' 8 to 13 nucleotides of the targeting domain).
In an embodiment, the core domain and targeting domain, are independently, 6 +1-2,
Ί+Ι-2, 8+/-2, 9+/-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 15+/-2, or 16+-2, nucleotides in length.
In an embodiment, the core domain and targeting domain, are independently, 10+/-2 nucleotides in length.
In an embodiment, the core domain and targeting domain, are independently, 10+/-4 nucleotides in length. In an embodiment, the core domain and targeting domain are independently 6, 7, 8, 9,
10, 11, 12, 13, 14, 15, 16, 17, or 18 nucleotides in length.
In an embodiment, the core domain and targeting domain are independently 3 to 20, 4 to 20, 5 to 20, 6 to 20, 7 to 20, 8 to 20, 9 to 20 10 to 20 or 15 to 20 nucleotides in length.
In an embodiment, the core domain and targeting domain are independently 3 to 15, e.g., 6 to 15, 7 to 14, 7 to 13, 6 to 12, 7 to 12, 7 to 11, 7 to 10, 8 to 14, 8 to 13, 8 to 12, 8 to
11, 8 to 10 or 8 to 9 nucleotides in length.
The core domain is complementary with the core domain target. Typically the core domain has exact complementarity with the core domain target. In some embodiments, the core domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the core domain. In an embodiment, the degree of
complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
The "secondary domain" of the targeting domain of the gRNA is complementary to the "secondary domain target" of the target nucleic acid.
In an embodiment, the secondary domain is positioned 5 ' to the core domain.
In an embodiment, the secondary domain is absent or optional.
In an embodiment, if the targeting domain is 26 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
In an embodiment, if the targeting domain is 25 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 12 to 17 nucleotides in length.
In an embodiment, if the targeting domain is 24 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 11 to 16 nucleotides in length.
In an embodiment, if the targeting domain is 23 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 10 to 15 nucleotides in length.
In an embodiment, if the targeting domain is 22 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 9 to 14 nucleotides in length. In an embodiment, if the targeting domain is 21 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 8 to 13 nucleotides in length.
In an embodiment, if the targeting domain is 20 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 7 to 12 nucleotides in length.
In an embodiment, if the targeting domain is 19 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 6 to 11 nucleotides in length.
In an embodiment, if the targeting domain is 18 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 5 to 10 nucleotides in length.
In an embodiment, if the targeting domain is 17 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 4 to 9 nucleotides in length.
In an embodiment, if the targeting domain is 16 nucleotides in length and the core domain (counted from the 3' end of the targeting domain) is 8 to 13 nucleotides in length, the secondary domain is 3 to 8 nucleotides in length.
In an embodiment, the secondary domain is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 nucleotides in length.
The secondary domain is complementary with the secondary domain target.
Typically the secondary domain has exact complementarity with the secondary domain target. In an embodiment, the secondary domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the secondary domain. In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the core domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the core domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the core domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the core domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. Typically, a core domain will contain no more than 1, 2, or 3 modifications.
Modifications in the core domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate core domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate core domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the secondary domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the secondary domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the secondary domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the secondary domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. Typically, a secondary domain will contain no more than 1, 2, or 3 modifications.
Modifications in the secondary domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate secondary domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate secondary domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, (1) the degree of complementarity between the core domain and its target, and (2) the degree of complementarity between the secondary domain and its target, may differ. In an embodiment, (1) may be greater than (2). In an embodiment, (1) may be less than (2). In an embodiment, (1) and (2) are the same, e.g., each may be completely complementary with its target.
In an embodiment, (1) the number of modifications (e.g., modifications from Section VIII) of the nucleotides of the core domain and (2) the number of modification (e.g., modifications from Section VIII) of the nucleotides of the secondary domain, may differ. In an embodiment, (1) may be less than (2). In an embodiment, (1) may be greater than (2). In an embodiment, (1) and (2) may be the same, e.g., each may be free of modifications.
The First and Second Complementarity Domains
The first complementarity domain is complementary with the second
complementarity domain.
Typically the first domain does not have exact complementarity with the second complementarity domain target. In some embodiments, the first complementarity domain can have 1, 2, 3, 4 or 5 nucleotides that are not complementary with the corresponding nucleotide of the second complementarity domain. In an embodiment, 1, 2, 3, 4, 5 or 6, e.g., 3 nucleotides, will not pair in the duplex, and, e.g., form a non-duplexed or looped-out region. In an embodiment, an unpaired, or loop-out, region, e.g., a loop-out of 3 nucleotides, is present on the second complementarity domain. In an embodiment, the unpaired region begins 1 , 2, 3, 4, 5, or 6, e.g., 4, nucleotides from the 5 ' end of the second complementarity domain.
In an embodiment, the degree of complementarity, together with other properties of the gRNA, is sufficient to allow targeting of a Cas9 molecule to the target nucleic acid.
In an embodiment, the first and second complementarity domains are:
independently, 6 +1-2, Ί+Ι-2, 8+/-2, 9+/-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 15+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2, 21+/-2, 22+/-2, 23+/-2, or 24+/-2 nucleotides in length;
independently, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 14, 16, 17, 18, 19, 20, 21 , 22, 23, 24, 25, or 26, nucleotides in length; or
independently, 5 to 24, 5 to 23, 5 to 22, 5 to 21, 5 to 20, 7 to 18, 9 to 16, or 10 to 14 nucleotides in length.
In an embodiment, the second complementarity domain is longer than the first complementarity domain, e.g., 2, 3, 4, 5, or 6, e.g., 6, nucleotides longer.
In an embodiment, the first and second complementary domains, independently, do not comprise modifications, e.g., modifications of the type provided in Section VIII.
In an embodiment, the first and second complementary domains, independently, comprise one or more modifications, e.g., modifications that the render the domain less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other
modification(s) from Section VIII.
In an embodiment, the first and second complementary domains, independently, include 1, 2, 3, 4, 5, 6, 7 or 8 or more modifications. In an embodiment, the first and second complementary domains, independently, include 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the first and second complementary domains, independently, include as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the first and second complementary domains, independently, include modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5 ' end of the domain, within 5 nucleotides of the 3 ' end of the domain, or more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no two consecutive nucleotides that are modified, within 5 nucleotides of the 5' end of the domain, within 5 nucleotides of the 3' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain. In an embodiment, the first and second complementary domains, independently, include no nucleotide that is modified within 5 nucleotides of the 5 ' end of the domain, within 5 nucleotides of the 3 ' end of the domain, or within a region that is more than 5 nucleotides away from one or both ends of the domain.
Modifications in a complementarity domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate complementarity domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate complementarity domain can be placed, either alone, or with one or more other candidate changes in a gRNA
molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the first complementarity domain has at least 60, 70, 80, 85%, 90% or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference first complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, first complementarity domain, or a first complementarity domain described herein, e.g., from Figs. 1A-1G.
In an embodiment, the second complementarity domain has at least 60, 70, 80, 85%, 90%, or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference second complementarity domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, second complementarity domain, or a second complementarity domain described herein, e.g., from Figs. 1A-1G.
The duplexed region formed by first and second complementarity domains is typically 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 base pairs in length (excluding any looped out or unpaired nucleotides).
In some embodiments, the first and second complementarity domains, when duplexed, comprise 11 paired nucleotides, for example, in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAA GGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 5).
In some embodiments, the first and second complementarity domains, when duplexed, comprise 15 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGAAAAGCAUAGCAAGU UAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC
(SEQ ID NO: 27).
In some embodiments the first and second complementarity domains, when duplexed, comprise 16 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGGAAACAGCAUAGCAA GUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGU GC (SEQ ID NO: 28).
In some embodiments the first and second complementarity domains, when duplexed, comprise 21 paired nucleotides, for example in the gRNA sequence (one paired strand underlined, one bolded):
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAUGCUGUUUUGGAAACAAAAC AGCAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCA CCGAGUCGGUGC (SEQ ID NO: 29).
In some embodiments, nucleotides are exchanged to remove poly-U tracts, for example in the gRNA sequences (exchanged nucleotides underlined):
NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAGAAAUAGCAAGUUAAUAUAA GGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 30); NNNNNNNNNNNNNNNNNNNNGUUUAAGAGCUAGAAAUAGCAAGUUUAAAUAA GGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGC (SEQ ID NO: 31); or
NNNNNNNNNNNNNNNNNNNNGUAUUAGAGCUAUGCUGUAUUGGAAACAAUAC AGCAUAGCAAGUUAAUAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCA CCGAGUCGGUGC (SEQ ID NO: 32).
The 5 ' Extension Domain
In an embodiment, a modular gRNA can comprise additional sequence, 5' to the second complementarity domain. In an embodiment, the 5' extension domain is 2 to 10, 2 to 9, 2 to 8, 2 to 7, 2 to 6, 2 to 5, or 2 to 4 nucleotides in length. In an embodiment, the 5' extension domain is 2, 3, 4, 5, 6, 7, 8, 9, or 10 or more nucleotides in length.
In an embodiment, the 5 ' extension domain nucleotides do not comprise
modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the 5' extension domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the 5' extension domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment, a nucleotide of the 5' extension domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the 5' extension domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the 5' extension domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
In an embodiment, the 5 ' extension domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the 5' extension domain, within 5 nucleotides of the 3' end of the 5' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5 ' end of the 5 ' extension domain, within 5 nucleotides of the 3 ' end of the 5 ' extension domain, or within a region that is more than 5 nucleotides away from one or both ends of the 5' extension domain.
Modifications in the 5 ' extension domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate 5 ' extension domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate 5 ' extension domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the 5' extension domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5, or 6 nucleotides from, a reference 5' extension domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S.
thermophilus, 5' extension domain, or a 5' extension domain described herein, e.g., from Figs. 1A-1G.
The Linking Domain
In a unimolecular gRNA molecule the linking domain is disposed between the first and second complementarity domains. In a modular gRNA molecule, the two molecules are associated with one another by the complementarity domains.
In an embodiment, the linking domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5,
60+/-5, 70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the linking domain is 20+/-10, 30+/-10, 40+/-10, 50+/-10, 60+/- 10, 70+/-10, 80+/-10, 90+/-10, or 100+/- 10 nucleotides, in length.
In an embodiment, the linking domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length. In other embodiments, the linking domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
In an embodiment, the linking domain is 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 17, 18, 19, or 20 nucleotides in length.
In an embodiment, the linking domain is a covalent bond.
In an embodiment, the linking domain comprises a duplexed region, typically adjacent to or within 1, 2, or 3 nucleotides of the 3' end of the first complementarity domain and/or the 5- end of the second complementarity domain. In an embodiment, the duplexed region can be 20+/- 10 base pairs in length. In an embodiment, the duplexed region can be 10+/-5, 15+/-5, 20+/-5, or 30+/-5 base pairs in length. In an embodiment, the duplexed region can be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, or 15 base pairs in length.
Typically the sequences forming the duplexed region have exact complementarity with one another, though in some embodiments as many as 1 , 2, 3, 4, 5, 6, 7 or 8 nucleotides are not complementary with the corresponding nucleotides.
In an embodiment, the linking domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the linking domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the linking domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the linking domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII. In some embodiments, the linking domain can comprise as many as 1 , 2, 3, 4, 5, 6, 7 or 8 modifications.
Modifications in a linking domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate linking domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated a system described in Section IV. A candidate linking domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the linking domain has at least 60, 70, 80, 85, 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 , or 6 nucleotides from, a reference linking domain, e.g., a linking domain described herein, e.g., from Figs. 1A-1G.
The Proximal Domain
In an embodiment, the proximal domain is 6 +1-2, Ί+Ι-2, 8+/-2, 9+/-2, 10+/-2, 11+/-2, 12+/-2, 13+/-2, 14+/-2, 14+/-2, 16+/-2, 17+/-2, 18+/-2, 19+/-2, or 20+/-2 nucleotides in length.
In an embodiment, the proximal domain is 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the proximal domain is 5 to 20, 7, to 18, 9 to 16, or 10 to 14 nucleotides in length. In an embodiment, the proximal domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the proximal domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the proximal domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the proximal domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other modification(s) from Section VIII.
In an embodiment, the proximal domain can comprise as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the proximal domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end, e.g., in a modular gRNA molecule. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end, e.g., in a modular gRNA molecule.
In an embodiment, the proximal domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3' end of the proximal domain, or more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3 ' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5' end of the proximal domain, within 5 nucleotides of the 3 ' end of the proximal domain, or within a region that is more than 5 nucleotides away from one or both ends of the proximal domain.
Modifications in the proximal domain can be selected so as to not interfere with gRNA molecule efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate proximal domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described at Section IV. The candidate proximal domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In an embodiment, the proximal domain has at least 60, 70, 80, 85 90 or 95% homology with, or differs by no more than 1, 2, 3, 4, 5 , or 6 nucleotides from, a reference proximal domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, proximal domain, or a proximal domain described herein, e.g., from Figs. 1A- 1G.
The Tail Domain
In an embodiment, the tail domain is 10 +/-5, 20+/-5, 30+/-5, 40+/-5, 50+/-5, 60+/-5,
70+/-5, 80+/-5, 90+/-5, or 100+/-5 nucleotides, in length.
In an embodiment, the tail domain is 20+/-5 nucleotides in length.
In an embodiment, the tail domain is 20+/-10, 30+/-10, 40+/-10, 50+/-10, 60+/-10, 70+/- 10, 80+/- 10, 90+/- 10, or 100+/- 10 nucleotides, in length.
In an embodiment, the tail domain is 25+/- 10 nucleotides in length.
In an embodiment, the tail domain is 10 to 100, 10 to 90, 10 to 80, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 20 or 10 to 15 nucleotides in length.
In other embodiments, the tail domain is 20 to 100, 20 to 90, 20 to 80, 20 to 70, 20 to 60, 20 to 50, 20 to 40, 20 to 30, or 20 to 25 nucleotides in length.
In an embodiment, the tail domain is 1 to 20, 1 to 15, 1 to 10, or 1 to 5 nucleotides in length.
In an embodiment, the tail domain nucleotides do not comprise modifications, e.g., modifications of the type provided in Section VIII. However, in an embodiment, the tail domain comprises one or more modifications, e.g., modifications that render it less susceptible to degradation or more bio-compatible, e.g., less immunogenic. By way of example, the backbone of the tail domain can be modified with a phosphorothioate, or other modification(s) from Section VIII. In an embodiment a nucleotide of the tail domain can comprise a 2' modification, e.g., a 2-acetylation, e.g., a 2' methylation, or other
modification(s) from Section VIII.
In some embodiments, the tail domain can have as many as 1, 2, 3, 4, 5, 6, 7 or 8 modifications. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 5' end. In an embodiment, the target domain comprises as many as 1, 2, 3, or 4 modifications within 5 nucleotides of its 3' end.
In an embodiment, the tail domain comprises a tail duplex domain, which can form a tail duplexed region. In an embodiment, the tail duplexed region can be 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 base pairs in length. In an embodiment, a further single stranded domain, exists 3' to the tail duplexed domain. In an embodiment, this domain is 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. In an embodiment it is 4 to 6 nucleotides in length. In an embodiment, the tail domain has at least 60, 70, 80, or 90% homology with, or differs by no more than 1, 2, 3, 4, 5 ,or 6 nucleotides from, a reference tail domain, e.g., a naturally occurring, e.g., an S. pyogenes, S. aureus or S. thermophilus, tail domain, or a tail domain described herein, e.g., from Figs. 1A-1G.
In an embodiment, the proximal and tail domain, taken together, comprise the following sequences:
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCU (SEQ ID NO: 33), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGGUGC (SEQ ID NO: 34), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCGGAUC
(SEQ ID NO: 35), or
AAGGCUAGUCCGUUAUCAACUUGAAAAAGUG (SEQ ID NO: 36), or
AAGGCUAGUCCGUUAUCA (SEQ ID NO: 37), or
AAGGCUAGUCCG (SEQ ID NO: 38).
In an embodiment, the tail domain comprises the 3' sequence UUUUUU, e.g., if a U6 promoter is used for transcription.
In an embodiment, the tail domain comprises the 3' sequence UUUU, e.g., if an HI promoter is used for transcription.
In an embodiment, tail domain comprises variable numbers of 3' Us depending, e.g., on the termination signal of the pol-III promoter used.
In an embodiment, the tail domain comprises variable 3 ' sequence derived from the DNA template if a T7 promoter is used.
In an embodiment, the tail domain comprises variable 3 ' sequence derived from the
DNA template, e.g., if in vitro transcription is used to generate the RNA molecule.
In an embodiment, the tail domain comprises variable 3 ' sequence derived from the DNA template, e.g., if a pol-II promoter is used to drive transcription.
Modifications in the tail domain can be selected so as to not interfere with targeting efficacy, which can be evaluated by testing a candidate modification in the system described in Section IV. gRNAs having a candidate tail domain having a selected length, sequence, degree of complementarity, or degree of modification, can be evaluated in the system described in Section IV. The candidate tail domain can be placed, either alone, or with one or more other candidate changes in a gRNA molecule/Cas9 molecule system known to be functional with a selected target and evaluated.
In some embodiments, the tail domain comprises modifications at two consecutive nucleotides, e.g., two consecutive nucleotides that are within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no two consecutive nucleotides are modified within 5 nucleotides of the 5' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain. In an embodiment, no nucleotide is modified within 5 nucleotides of the 5 ' end of the tail domain, within 5 nucleotides of the 3' end of the tail domain, or within a region that is more than 5 nucleotides away from one or both ends of the tail domain.
In an embodiment a gRNA has the following structure:
5' [targeting domain] -[first complementarity domain] -[linking domain] -[second complementarity domain] -[proximal domain]-[tail domain]-3'
wherein, the targeting domain comprises a core domain and optionally a secondary domain, and is 10 to 50 nucleotides in length;
the first complementarity domain is 5 to 25 nucleotides in length and, In an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference first complementarity domain disclosed herein;
the linking domain is 1 to 5 nucleotides in length;
the second complementarity domain is 5 to 27 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference second complementarity domain disclosed herein;
the proximal domain is 5 to 20 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference proximal domain disclosed herein; and
the tail domain is absent or a nucleotide sequence is 1 to 50 nucleotides in length and, in an embodiment has at least 50, 60, 70, 80, 85, 90 or 95% homology with a reference tail domain disclosed herein.
Exemplary Chimeric gRNAs
In an embodiment, a unimolecular, or chimeric, gRNA comprises, preferably from 5' to 3':
a targeting domain (which is complementary to a target nucleic acid);
a first complementarity domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22,
23, 24, 25, or 26 nucleotides;
a linking domain; a second complementarity domain (which is complementary to the first complementarity domain);
a proximal domain; and
a tail domain,
wherein,
(a) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
(b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain; or
(c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides
3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
In an embodiment, the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3 ' to the last nucleotide of the second complementarity domain.
In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3 ' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides
(e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides
(e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides
(e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides
(e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain. In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides
(e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides
(e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides
(e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides
(e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides. In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number:
NNNNNNNNNNNNNNNNNNNNGUUUUAGAGCUAGAAAUAGCAAGUUAAA AUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUUU UU (SEQ ID NO: 45). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. pyogenes gRNA molecule. In some embodiments, the unimolecular, or chimeric, gRNA molecule (comprising a targeting domain, a first complementary domain, a linking domain, a second complementary domain, a proximal domain and, optionally, a tail domain) comprises the following sequence in which the targeting domain is depicted as 20 Ns but could be any sequence and range in length from 16 to 26 nucleotides and in which the gRNA sequence is followed by 6 Us, which serve as a termination signal for the U6 promoter, but which could be either absent or fewer in number:
NNNNNNNNNNNNNNNNNNNNGUUUUAGUACUCUGGAAACAGAAUCUAC UAAAACAAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUUUU UU (SEQ ID NO: 40). In an embodiment, the unimolecular, or chimeric, gRNA molecule is a S. aureus gRNA molecule.
Exemplary Modular gRNAs
In an embodiment, a modular gRNA comprises:
a first strand comprising, preferably from 5' to 3' ;
a targeting domain, e.g., comprising 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, or 26 nucleotides;
a first complementarity domain; and
a second strand, comprising, preferably from 5 ' to 3 ' :
optionally a 5 ' extension domain;
a second complementarity domain;
a proximal domain; and
a tail domain,
wherein:
(a) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides;
(b) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides
3' to the last nucleotide of the second complementarity domain; or
(c) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain. In an embodiment, the sequence from (a), (b), or (c), has at least 60, 75, 80, 85, 90, 95, or 99% homology with the corresponding sequence of a naturally occurring gRNA, or with a gRNA described herein.
In an embodiment, the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3 ' to the last nucleotide of the second complementarity domain.
In an embodiment, there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3 ' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides (e.g., 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides
(e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides
(e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length. In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides
(e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides (e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides
(e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 16 nucleotides
(e.g., 16 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 16 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides. In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 17 nucleotides (e.g., 17 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 17 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 18 nucleotides (e.g., 18 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 18 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 19 nucleotides (e.g., 19 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 19 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 20 nucleotides (e.g., 20 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 20 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 21 nucleotides (e.g., 21 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 21 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides
(e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 22 nucleotides (e.g., 22 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 22 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides
(e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 23 nucleotides (e.g., 23 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 23 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain. In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides (e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides
(e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 24 nucleotides
(e.g., 24 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 24 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides (e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides
(e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 25 nucleotides
(e.g., 25 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 25 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides. In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 15, 18, 20, 25, 30, 31, 35,
40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain.
In an embodiment, the targeting domain comprises, has, or consists of, 26 nucleotides (e.g., 26 consecutive nucleotides) having complementarity with the target domain, e.g., the targeting domain is 26 nucleotides in length; and there are at least 16, 19, 21, 26, 31, 32, 36,
41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain.
II. Methods for Designing gRNAs
Methods for designing gRNAs are described herein, including methods for selecting, designing and validating target domains. Exemplary targeting domains are also provided herein. Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
Methods for selection and validation of target sequences as well as off-target analyses are described, e.g., in Mali et al., 2013 SCIENCE 339(6121): 823-826; Hsu et al. NAT
BIOTECHNOL, 31(9): 827-32; Fu et al., 2014 NAT BIOTECHNOL, doi: 10.1038/nbt.2808.
PubMed PMID: 24463574; Heigwer et al., 2014 NAT METHODS 11(2): 122-3. doi:
10.1038/nmeth.2812. PubMed PMID: 24481216; Bae et al., 2014 BIOTNFORMATICS PubMed PMID: 24463181; Xiao A et al., 2014 BIOINFORMATICS PubMed PMID: 24389662.
For example, a software tool can be used to optimize the choice of gRNA within a user's target sequence, e.g., to minimize total off-target activity across the genome. Off target activity may be other than cleavage. For each possible gRNA choice using S. pyogenes Cas9, the tool can identify all off-target sequences (preceding either NAG or NGG PAMs) across the genome that contain up to certain number (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10) of mismatched base-pairs. The cleavage efficiency at each off-target sequence can be predicted, e.g., using an experimentally-derived weighting scheme. Each possible gRNA is then ranked according to its total predicted off-target cleavage; the top-ranked gRNAs represent those that are likely to have the greatest on-target and the least off-target cleavage. Other functions, e.g., automated reagent design for CRISPR construction, primer design for the on-target Surveyor assay, and primer design for high-throughput detection and quantification of off- target cleavage via next-gen sequencing, can also be included in the tool. Candidate gRNA molecules can be evaluated by art-known methods or as described in Section IV herein.
The Targeting Domains discussed herein can be incorporated into the gRNAs described herein.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to knock out the MYOC gene
As an example, three strategies were utilized to identify gRNAs for use with S.
pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In the first strategy, guide RNAs (gRNAs) for use with the S. pyogenes Cas9 (Tables
4A-4C) were identified using the publically available web-based ZiFiT server (Fu et al., Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat Biotechnol. 2014 Jan 26. doi: 10.1038/nbt.2808. PubMed PMID: 24463574, for the original references see Sander et al., 2007, NAR 35:W599-605; Sander et al., 2010, NAR 38: W462-8). In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
The gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
1. For the dual nickase strategy, gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, it will also often result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus just causing indel mutations at the site of one gRNA.
In order to find a pair for the dual-nickase strategy it was necessary to either extend the distance from the mutation or remove the requirement for the 5'G. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non-inclusive (each gRNA is listed only once).
As discussed above, gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
gRNAs for use with the N. meningitidis (Tables 4E) and S. aureus (Tables 4D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
In a second strategy, Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are computationally determined , an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A "high level of orthogonality" or "good orthogonality" may, for example, refer to
20- mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence.
Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer,
21- mer, 22-mer, 23-mer and 24-mer gRNAs were designed. Tarteting domains, disclosed herein, may comprise the 17-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E. Tarteting domains, disclosed herein, may comprises the 18-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E. Tarteting domains, disclosed herein, may comprises the 19-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E. Tarteting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 21 or more nucleotides may comprise the 20- mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E. Tarteting domains, disclosed herein, may comprises the 21-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E. Tarteting domains, disclosed herein, may comprises the
22- mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 6A-6E, 7A-7G or
8A-8E. Tarteting domains, disclosed herein, may comprises the 23-mer described in Tables 6A-6E, 7A-7G or 8A-8E,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E. Tarteting domains, disclosed herein, may comprises the 24-mer described in Tables 6A-6E, 7A-7G or 8A-8E, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 6A-6E, 7A-7G or 8A-8E. gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two considerations:
1. gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, cleaving with dual nickase pairs can also result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus causing indel mutations at the site of one gRNA.
The targeting domains discussed herein can be incorporated into the gRNAs described herein.
gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 6A-6E), and
N. meningitidis (Tables 8A-8E); and 7 tiers for S. aureus (Tables 7A-7G). For S. pyogenes, and N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon). The targeting domain for tier 5 gRNA molecules were selected based on distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon). For S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a target site (e.g., start codon), e.g., within 500bp (e.g., downstream) of the target site (e.g., start codon) and (2) PAM is NNGRRV. The targeting domain for tier 5 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon), (2) the presence of 5'G and (3) PAM is NNGRRT. The targeting domain for tier 6 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon) and (2) PAM is NNGRRT. The targeting domain for tier 7 gRNA molecules were selected based on (1) distance to the target site (e.g., start codon), e.g., within reminder of the coding sequence, e.g., downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon) and (2) PAM is NNGRRV. Note that tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. meningitidis to knock down the MYOC gene
As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In the first strategy, guide RNAs (gRNAs) for use with the S. pyogenes Cas9 (Tables
5A-5D) were identified using the publically available web-based ZiFiT server (Fu et al., Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat Biotechnol. 2014 Jan 26. doi: 10.1038/nbt.2808. PubMed PMID: 24463574, for the original references see Sander et al., 2007, NAR 35:W599-605; Sander et al., 2010, NAR 38: W462-8). In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
The gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non- inclusive (each gRNA is listed only once).
gRNAs for use with the N. meningitidis (Tables 5E) and S. aureus (Tables 5D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
In a second strategy, Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are computationally determined , an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A "high level of orthogonality" or "good orthogonality" may, for example, refer to
20- mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence.
Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer,
21- mer, 22-mer, 23-mer and 24-mer gRNAs were designed. Tarteting domains, disclosed herein, may comprise the 17-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E. Tarteting domains, disclosed herein, may comprises the 18-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 9A-9E, 10A- 10G or 11A-11E. Tarteting domains, disclosed herein, may comprises the 19-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A- 11E. Tarteting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
Tarteting domains, disclosed herein, may comprises the 21-mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E. Tarteting domains, disclosed herein, may comprises the 22-mer described in Tables 9A-9E, 10A-10G or 11A- HE, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E. Tarteting domains, disclosed herein, may comprises the 23-mer described in Tables 9A-9E, 10A-10G or HA-llE,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E. Tarteting domains, disclosed herein, may comprises the 24- mer described in Tables 9A-9E, 10A-10G or 11A-11E, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 9A-9E, 10A-10G or 11A-11E.
The targeting domains discussed herein can be incorporated into the gRNAs described herein.
gRNAs were identified and ranked into 5 tiers for S. pyogenes (Tables 9A-9E), and N. meningitidis (Tables 11A-11E); and 7 tiers for S. aureus (Tables 10A-10G). For S.
pyogenes, and N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site. The targeting domain for tier 5 gRNA molecules were selected based on distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site
(extending to lkb up and downstream of the transcription start site) . For S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a target site, e.g., within 3454-2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and (2) PAM is NNGRRV. The targeting domain for tier 5 gRNA molecules were selected based on (1) distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) , (2) the presence of 5'G and (3) PAM is NNGRRT. The targeting domain for tier 6 gRNA molecules were selected based on (1) distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) and (2) PAM is NNGRRT. The targeting domain for tier 7 gRNA molecules were selected based on (1) distance to the target site, e.g., within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. for the mutational hotspot 477-502 target site in the MYOC gene
As an example, three strategies were utilized to identify gRNAs for use with S.
pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In the first strategy, guide RNAs (gRNAs) for use with the S. pyogenes Cas9 (Tables
3A-3C) were identified using the publically available web-based ZiFiT server (Fu et al., Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat Biotechnol. 2014 Jan 26. doi: 10.1038/nbt.2808. PubMed PMID: 24463574, for the original references see Sander et al., 2007, NAR 35:W599-605; Sander et al., 2010, NAR 38: W462-8). In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
The gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
1. For the dual nickase strategy, gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, it will also often result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus just causing indel mutations at the site of one gRNA.
While it can be desirable to have gRNAs start with a 5 ' G, this requirement was relaxed for some gRNAs in tier 1 in order to identify guides in the correct orientation, within a reasonable distance to the mutation and with a high level of orthogonality. In order to find a pair for the dual-nickase strategy it was necessary to either extend the distance from the mutation or remove the requirement for the 5'G. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non- inclusive (each gRNA is listed only once).
As discussed above, gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
gRNAs for use with the N. meningitidis (Tables 3E) and S. aureus (Tables 3D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species. In a second strategy, Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and
N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are computationally determined , an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A "high level of orthogonality" or "good orthogonality" may, for example, refer to
20- mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence.
Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer,
21- mer, 22-mer, 23-mer and 24-mer gRNAs were designed. Targeting domains, disclosed herein, may comprise the 17-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A- 15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B. Targeting domains, disclosed herein, may comprises the 18-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B. Targeting domains, disclosed herein, may comprises the 19-mer described in Tables 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, or 17A-17B. Targeting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A- 17B. Targeting domains, disclosed herein, may comprises the 21-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B. Targeting domains, disclosed herein, may comprises the 22-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B. Targeting domains, disclosed herein, may comprises the 23-mer described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, or 17A-17B. Targeting domains, disclosed herein, may comprises the 24-mer described in Tables 12A-12D, 13A-13E, 14A- 14C, 15A-15D, 16A-16E, or 17A-17B, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 12A-12D, 13A-13E, 14A-14C, 15A- 15D, 16A-16E, or 17A-17B.
gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two
considerations:
1. gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, cleaving with dual nickase pairs can also result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus causing indel mutations at the site of one gRNA.
The targeting domains discussed herein can be incorporated into the gRNAs described herein. In an embodiment, gRNAs were identified and ranked into 4 tiers for S. pyogenes (Tables 12A-12D), and N. meningitidis (Tables 14A-14C); and 5 tiers for S. aureus (Tables 13A-13E). For S. pyogenes, and N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site. For S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site, (2) the presence of a 5'G and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRT. The targeting domain for tier 5 gRNA molecules were selected based on (1) (1) distance to a POAG target position, e.g., within 200 bp upstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In another embodiment, gRNAs were identified and ranked into 4 tiers for S.
pyogenes (Tables 15A-15D), and N. meningitidis (Tables 17A-17B); and 5 tiers for S. aureus (Tables 16A-16E). For S. pyogenes, and N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site. For S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site, (2) the presence of a 5'G and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRT. The targeting domain for tier 5 gRNA molecules were selected based on (1) (1) distance to a POAG target position, e.g., within 200 bp downstream from the mutational hotspot 477-502 target site and (2) PAM is NNGRRV. Note that tiers are non-inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. for correcting a mutation (e.g., Ι477Ν) in the MYOC gene
As an example, three strategies were utilized to identify gRNAs for use with S. pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In the first strategy, guide RNAs (gRNAs) for use with the S. pyogenes Cas9 (Tables
2A-2C) were identified using the publically available web-based ZiFiT server (Fu et al., Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat Biotechnol. 2014 Jan 26. doi: 10.1038/nbt.2808. PubMed PMID: 24463574, for the original references see Sander et al., 2007, NAR 35:W599-605; Sander et al., 2010, NAR 38: W462-8). In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
The gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
1. For the dual nickase strategy, gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, it will also often result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus just causing indel mutations at the site of one gRNA.
While it can be desirable to have gRNAs start with a 5 ' G, this requirement was relaxed for some gRNAs in tier 1 in order to identify guides in the correct orientation, within a reasonable distance to the mutation and with a high level of orthogonality. In order to find a pair for the dual-nickase strategy it was necessary to either extend the distance from the mutation or remove the requirement for the 5'G. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non- inclusive (each gRNA is listed only once). As discussed above, gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
gRNAs for use with the N. meningitidis (Tables 2E) and S. aureus (Tables 2D) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
In a second strategy, Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are computationally determined, an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A "high level of orthogonality" or "good orthogonality" may, for example, refer to 20-mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence. Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer, 21-mer, 22-mer, 23-mer and 24-mer gRNAs were designed. Targeting domains, disclosed herein, may comprise the 17-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D. Targeting domains, disclosed herein, may comprises the 18-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D. Targeting domains, disclosed herein, may comprises the 19-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D. Targeting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D. Targeting domains, disclosed herein, may comprises the 21-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D. Targeting domains, disclosed herein, may comprises the 22-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D. Targeting domains, disclosed herein, may comprises the 23-mer described in Tables 18A-18D, 19A-19E, or 20A-20D,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D. Targeting domains, disclosed herein, may comprises the 24-mer described in Tables 18A-18D, 19A-19E, or 20A-20D, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 18A-18D, 19A-19E, or 20A-20D.
gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two
considerations: 1. gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, cleaving with dual nickase pairs can also result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus causing indel mutations at the site of one gRNA.
The targeting domains discussed herein can be incorporated into the gRNAs described herein.
In an embodiment, gRNAs were identified and ranked into 4 tiers for S. pyogenes
(Tables 18A-18D), and N. meningitidis (Tables 20A-20DC); and 5 tiers for S. aureus
(Tables 19A-19D). For S. pyogenes, and N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N). For S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N), (2) the presence of a 5'G and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) PAM is NNGRRT. The targeting domain for tier 5 gRNA molecules were selected based on (1) (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., I477N) and (2) PAM is NNGRRV. Note that tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier. Strategies to identify gRNAs for S. pyogenes, S. Aureus, and N. for correcting a mutation (e.g., P370L) in the MYOC gene
As an example, three strategies were utilized to identify gRNAs for use with S.
pyogenes, S. aureus and N. meningitidis Cas9 enzymes.
In the first strategy, guide RNAs (gRNAs) for use with the S. pyogenes Cas9 (Tables
1A-1C) were identified using the publically available web-based ZiFiT server (Fu et al., Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat Biotechnol. 2014 Jan 26. doi: 10.1038/nbt.2808. PubMed PMID: 24463574, for the original references see Sander et al., 2007, NAR 35:W599-605; Sander et al., 2010, NAR 38: W462-8). In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available Repeat-Masker program. RepeatMmasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence. Following identification, gRNAs for use with a S. pyogenes Cas9 were ranked into 3 or 4 tiers, as described below.
The gRNAs in tier 1 were selected based on their distance to the target site and their orthogonality in the genome (based on the ZiFiT identification of close matches in the human genome containing an NGG PAM). As an example, for all targets, both 17-mer and 20-mer gRNAs were designed. gRNAs were also selected both for single-gRNA nuclease cutting and for the dual gRNA nickase strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for which strategy is based on several considerations:
1. For the dual nickase strategy, gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, it will also often result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus just causing indel mutations at the site of one gRNA.
While it can be desirable to have gRNAs start with a 5 ' G, this requirement was relaxed for some gRNAs in tier 1 in order to identify guides in the correct orientation, within a reasonable distance to the mutation and with a high level of orthogonality. In order to find a pair for the dual-nickase strategy it was necessary to either extend the distance from the mutation or remove the requirement for the 5'G. For selection of tier 2 gRNAs, the distance restriction was relaxed in some cases such that a longer sequence was scanned, but the 5'G was required for all gRNAs. Whether or not the distance requirement was relaxed depended on how many sites were found within the original search window. Tier 3 uses the same distance restriction as tier 2, but removes the requirement for a 5'G. Note that tiers are non- inclusive (each gRNA is listed only once).
As discussed above, gRNAs were identified for single-gRNA nuclease cleavage as well as for a dual-gRNA paired "nickase" strategy, as indicated.
gRNAs for use with the N. meningitidis (Tables IE) and S. aureus (Tables ID) Cas9s were identified manually by scanning genomic DNA sequence for the presence of PAM sequences. These gRNAs were not separated into tiers, but are provided in single lists for each species.
In a second strategy, Guide RNAs (gRNAs) for use with S. pyogenes, S. aureus and N. meningitidis Cas9s were identified using a DNA sequence searching algorithm. Guide RNA design was carried out using a custom guide RNA design software based on the public tool cas-offinder (reference:Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases., Bioinformatics. 2014 Feb 17. Bae S, Park J, Kim JS. PMID:24463181). Said custom guide RNA design software scores guides after calculating their genomewide off-target propensity. Typically matches ranging from perfect matches to 7 mismatches are considered for guides ranging in length from 17 to 24. Once the off-target sites are computationally determined, an aggregate score is calculated for each guide and summarized in a tabular output using a web-interface. In addition to identifying potential gRNA sites adjacent to PAM sequences, the software also identifies all PAM adjacent sequences that differ by 1, 2, 3 or more nucleotides from the selected gRNA sites. Genomic DNA sequence for each gene was obtained from the UCSC Genome browser and sequences were screened for repeat elements using the publically available
RepeatMasker program. RepeatMasker searches input DNA sequences for repeated elements and regions of low complexity. The output is a detailed annotation of the repeats present in a given query sequence.
Following identification, gRNAs were ranked into tiers based on their distance to the target site, their orthogonality and presence of a 5' G (based on identification of close matches in the human genome containing a relavant PAM (e.g., in the case of S. pyogenes, a NGG PAM, in the case of 5". aureus, a NNGRRT or NNGRRV PAM, and in the case of N. meningitidis, a NNNNGATT or NNNNGCTT PAM). Orthogonality refers to the number of sequences in the human genome that contain a minimum number of mismatches to the target sequence. A "high level of orthogonality" or "good orthogonality" may, for example, refer to
20- mer gRNAs that have no identical sequences in the human genome besides the intended target, nor any sequences that contain one or two mismatches in the target sequence.
Targeting domains with good orthogonality are selected to minimize off-target DNA cleavage.
As an example, for S. pyogenes and N. meningitidis targets, 17-mer, or 20-mer gRNAs were designed. As another example, for S. aureus targets, 18-mer, 19-mer, 20-mer,
21- mer, 22-mer, 23-mer and 24-mer gRNAs were designed. Tarteting domains, disclosed herein, may comprise the 17-mer described in Tables 21A-21D, 22A-22E, or 23A-23B, e.g., the targeting domains of 18 or more nucleotides may comprise the 17-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B. Tarteting domains, disclosed herein, may comprises the 18-mer described in Tables 21A-21D, 22A-22E, or 23A-23B, e.g., the targeting domains of 19 or more nucleotides may comprise the 18-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B. Tarteting domains, disclosed herein, may comprises the 19-mer described in Tables 21A-21D, 22A-22E, or 23A-23B, e.g., the targeting domains of 20 or more nucleotides may comprise the 19-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B. Tarteting domains, disclosed herein, may comprises the 20-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B, e.g., the targeting domains of 21 or more nucleotides may comprise the 20-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B. Tarteting domains, disclosed herein, may comprises the 21-mer described in Tables 21A-21D, 22A-22E, or 23A-23B, e.g., the targeting domains of 22 or more nucleotides may comprise the 21-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B. Tarteting domains, disclosed herein, may comprises the 22-mer described in Tables 21A-21D, 22A-22E, or 23A-23B, e.g., the targeting domains of 23 or more nucleotides may comprise the 22-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B. Tarteting domains, disclosed herein, may comprises the 23-mer described in Tables 21A-21D, 22A-22E, or 23A-23B,e.g., the targeting domains of 24 or more nucleotides may comprise the 23-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B. Tarteting domains, disclosed herein, may comprises the 24-mer described in Tables 21A-21D, 22A-22E, or 23A-23B, e.g., the targeting domains of 25 or more nucleotides may comprise the 24-mer gRNAs described in Tables 21A-21D, 22A-22E, or 23A-23B.gRNAs were identified for both single-gRNA nuclease cleavage and for a dual-gRNA paired "nickase" strategy. Criteria for selecting gRNAs and the determination for which gRNAs can be used for the dual-gRNA paired "nickase" strategy is based on two considerations:
1. gRNA pairs should be oriented on the DNA such that PAMs are facing out and cutting with the D10A Cas9 nickase will result in 5' overhangs.
2. An assumption that cleaving with dual nickase pairs will result in deletion of the entire intervening sequence at a reasonable frequency. However, cleaving with dual nickase pairs can also result in indel mutations at the site of only one of the gRNAs. Candidate pair members can be tested for how efficiently they remove the entire sequence versus causing indel mutations at the site of one gRNA.
The targeting domains discussed herein can be incorporated into the gRNAs described herein.
In an embodiment, gRNAs were identified and ranked into 4 tiers for S. pyogenes
(Tables 21A-21D), and N. meningitidis (Tables 23A-23B); and 5 tiers for S. aureus (Tables 22A-22E). For S. pyogenes, and N. meningitidis, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L), (2) a high level of orthogonality and (3) the presence of 5'G. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L) and (2) a high level of orthogonality. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L) and (2) the presence of 5'G. The targeting domain for tier 4 gRNA molecules were selected based on distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L). For S. aureus, the targeting domain for tier 1 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L), (2) a high level of orthogonality, (3) the presence of 5'G and (4) PAM is NNGRRT. The targeting domain for tier 2 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L), (2) a high level of orthogonality, and (3) PAM is NNGRRT. The targeting domain for tier 3 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L), (2) the presence of a 5'G and (2) PAM is NNGRRT. The targeting domain for tier 4 gRNA molecules were selected based on (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L) and (2) PAM is NNGRRT. The targeting domain for tier 5 gRNA molecules were selected based on (1) (1) distance to a target site, e.g., within 200 bp from a mutation (e.g., P370L) and (2) PAM is NNGRRV. Note that tiers are non- inclusive (each gRNA is listed only once for the strategy). In certain instances, no gRNA was identified based on the criteria of the particular tier.
In an embodiment, two or more (e.g., three or four) gRNA molecules are used with one Cas9 molecule. In another embodiment, when two or more (e.g., three or four) gRNAs are used with two or more Cas9 molecules, at least one Cas9 molecule is from a different species than the other Cas9 molecule(s). For example, when two gRNA molecules are used with two Cas9 molecules, one Cas9 molecule can be from one species and the other Cas9 molecule can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
Any of the targeting domains in the tables described herein can be used with a Cas9 nickase molecule to generate a single strand break.
Any of the targeting domains in the tables described herein can be used with a Cas9 nuclease molecule to generate a double strand break.
When two gRNAs designed for use to target two Cas9 molecules, one Cas9 can be one species, the second Cas9 can be from a different species. Both Cas9 species are used to generate a single or double-strand break, as desired.
It is contemplated herein that any upstream gRNA described herein may be paired with any downstream gRNA described herein. When an upstream gRNA designed for use with one species of Cas9 is paired with a downstream gRNA designed for use from a different species of Cas9, both Cas9 species are used to generate a single or double-strand break, as desired. Exemplary Targeting Domains
Table 1A provides exemplary targeting domains for the P370L target site selected according to the first tier parameters, and are selected based on the presence of a 5' G (except for MYOC-37, -46, -48, and -50), close proximity and orientation to mutation and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single-stranded break nucleases (nickases).
In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
In an embodiment, two 20-mer guide RNAs are used to target two S. pyogenes Cas9 nucleases or two S. pyogenes Cas9 nickases, e.g., MYOC-24 and MYOC-10, MYOC-20 and MYOC-16, or MYOC-24 and MYOC-16 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g., MYOC-50 and MYOC-32, MYOC-50 and MYOC-37, or MYOC-48 and MYOC-37 are used.
Table 1A
Figure imgf000117_0001
Table IB provides exemplary targeting domains for the P370L target site selected according to the second tier parameters and are selected based on the presence of a 5' G and reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
Table IB
Figure imgf000118_0001
Table 1C provides exemplary targeting domains for the P370L target site selected according to the third tier parameters and are selected based on reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 1C
3rd Tier selected based on reasonable proximity to mutation
gRNA DNA Target Site SEQ ID
Targeting Domain
Name Strand Length NO
myoC-2 - CGAGACAGUGAAGGCUGAGA 20 405 myoC-3 - AAGGCUGAGAAGGAAAUCCC 20 406 myoC-5 - AUCCCUGGAGCUGGCUACCA 20 407 myoC-6 - ACGGACAGUUCCCGUAU UCU 20 408 myoC-7 - CGGACAGUUCCCG UAUUCUU 20 409 myoC-9 - CAGU UCCCGUAU UCUUGGGG 20 410 myoC-11 - UGGCUACACGGACAUUGACU 20 411 myoC-12 - CACGGACAU UGACUUGGCUG 20 412 myoC-14 - CUGUGGAUGAAGCAGGCCUC 20 413 myoC-15 - UGUGGAUGAAGCAGGCCUCU 20 414 myoC-17 - UACAGCACCGAUGAGGCCAA 20 415 myoC-18 + AAUGGCACCUUUGGCCUCAU 20 416 myoC-19 + CGGUGCUGUAAAUGACCCAG 20 417 myoC-21 + UGUAGCCACCCCAAGAAUAC 20 418 myoC-22 + AAGAAUACGGGAACUGUCCG 20 419 myoC-23 + UGUCCGUGGUAGCCAGCUCC 20 420 myoC-25 + CU UCUCAGCCU UCACUGUCU 20 421 myoC-26 + CUCAUAUCUUAUGACAGUUC 20 422 myoC-29 - GCUGAGAAGGAAAUCCC 17 423 myoC-30 - AAGGAAAUCCCUGGAGC 17 424 myoC-31 - CCUGGAGCUGGCUACCA 17 425 myoC-33 - ACAGU UCCCGUAUUCU U 17 426 myoC-34 - CAGU UCCCGUAU UCUUG 17 427 myoC-35 - UUCCCG UAUUCUUGGGG 17 428 myoC-36 - UUCUUGGGGUGGCUACA 17 429 myoC-39 - UUGGCUGUGGAUGAAGC 17 430 myoC-40 - UGGAUGAAGCAGGCCUC 17 431 myoC-42 - CAUUUACAGCACCGAUG 17 432 myoC-43 - AGCACCGAUGAGGCCAA 17 433 myoC-45 + UGCUGUAAAUGACCCAG 17 434 myoC-47 + AGCCACCCCAAGAAUAC 17 435 myoC-49 + CCGUGGUAGCCAGCUCC 17 436 myoC-51 + CUCAGCCUUCACUGUCU 17 437 myoC-52 + AUAUCUUAUGACAGUUC 17 438
Table ID provides exemplary targeting domains for the P370L target site selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. aureus single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks. In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table ID
Figure imgf000119_0001
myoC-2904 - GUCCAGAACUGUCAUAAGAU 20 1806 myoC-2905 - GAACUGUCAUAAGAUAUGAG 20 1807 myoC-2906 - CAUAAGAUAUGAGCUGAAUA 20 1808 myoC-2907 - AUGAGCUGAAUACCGAGACA 20 1809 myoC-2908 - GAAUACCGAGACAGUGAAGG 20 1810 myoC-2909 - AUACCGAGACAGUGAAGGCU 20 1811 myoC-2910 - CCGAGACAGUGAAGGCUGAG 20 1812 myoC-2 - CGAGACAGUGAAGGCUGAGA 20 405 myoC-2912 - GAAGGCUGAGAAGGAAAUCC 20 1813 myoC-3 - AAGGCUGAGAAGGAAAUCCC 20 406 myoC-2914 - AAUCCCUGGAGCUGGCUACC 20 1814 myoC-2915 - CACGGACAGU UCCCGUAUUC 20 1815 myoC-6 - ACGG ACAGU UCCCG U AU UCU 20 408 myoC-2917 - CGUAUUCUUGGGGUGGCUAC 20 1816 myoC-2918 - ACACGGACAUUGACU UGGCU 20 1817 myoC-2919 - GGACAU UGACUUGGCUGUGG 20 1818 myoC-2920 - GCUGUGGAUGAAGCAGGCCU 20 1819 myoC-2921 - CUGGGUCAUU UACAGCACCG 20 1820 myoC-2922 + GCUCAUAUCU UAUGACAGUU 20 1821 myoC-23 + UGUCCGUGGUAGCCAGCUCC 20 420 myoC-2924 + CUGUCCGUGGUAGCCAGCUC 20 1822 myoC-21 + UGUAGCCACCCCAAGAAUAC 20 418 myoC-20 + GUGUAGCCACCCCAAGAAUA 20 390 myoC-2927 + CGUGUAGCCACCCCAAGAAU 20 1823 myoC-2928 + AAUGUCCGUGUAGCCACCCC 20 1824 myoC-2929 + CAUCGGUGCUGUAAAUGACC 20 1825 myoC-2930 - CAGAACUGUCAUAAGAU 17 1826 myoC-2931 - CUGUCAUAAGAUAUGAG 17 1827 myoC-2932 - AAGAUAUGAGCUGAAUA 17 1828 myoC-2933 - AGCUGAAUACCGAGACA 17 1829 myoC-2934 - UACCGAGACAGUGAAGG 17 1830 myoC-2935 - CCGAGACAGUGAAGGCU 17 1831 myoC-2936 - AGACAGUGAAGGCUGAG 17 1832 myoC-28 - GACAGUGAAGGCUGAGA 17 401 myoC-2938 - GGCUGAGAAGGAAAUCC 17 1833 myoC-29 - GCUGAGAAGGAAAUCCC 17 423 myoC-2940 - CCCUGGAGCUGGCUACC 17 1834 myoC-2941 - GGACAGUUCCCGUAUUC 17 1835 myoC-544 - GACAGU UCCCG UAU UCU 17 881 myoC-2943 - AU UCUUGGGGUGGCUAC 17 1836 myoC-2944 - CGGACAU UGACUUGGCU 17 1837 myoC-2945 - CAU UGACUUGGCUGUGG 17 1838 myoC-2946 - GUGGAUGAAGCAGGCCU 17 1839 myoC-2947 - GGUCAUU UACAGCACCG 17 1840 myoC-2948 + CAUAUCU UAUGACAGU U 17 1841 myoC-49 + CCGUGGUAGCCAGCUCC 17 436 myoC-2950 + UCCGUGGUAGCCAGCUC 17 1842 myoC-47 + AGCCACCCCAAGAAUAC 17 435 myoC-46 + UAGCCACCCCAAGAAUA 17 395 myoC-2953 + GUAGCCACCCCAAGAAU 17 1843 myoC-2954 + GUCCGUGUAGCCACCCC 17 1844 myoC-2955 + CGGUGCUGUAAAUGACC 17 1845
Table IE provides exemplary targeting domains for the P370L site selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with N. meningitidis single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks.
Table IE
Figure imgf000121_0001
Table 2A provides exemplary targeting domains for the I477N target site selected according to first tier parameters, and are selected based on the presence of a 5' G (except for MYOC-68), close proximity and orientation to mutation and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single- stranded break nucleases (nickases).
In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
In an embodiment, two 20-mer guide RNAs are used to target two S. pyogenes Cas9 nucleases or two S. pyogenes Cas9 nickases, e.g., MYOC-68 and MYOC-57 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g., MYOC-87 and MYOC-74, or MYOC-90 and MYOC-74 are used. Table 2A
Figure imgf000122_0001
Table 2B provides exemplary targeting domains for the I477N target site selected according to the second tier parameters and are selected based on the presence of a 5' G and reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
Table 2B
Figure imgf000122_0002
myoC-76 - GAAGAAGCUCUU UGCCU 17 452
Table 2C provides exemplary targeting domains for the I477N target site selected according to the third tier parameters and are selected based on reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that
PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 2C
Figure imgf000123_0001
myoC-89 | + | CUUGAAUGGGAUGGUCA | 17 | 476
Table 2D provides exemplary targeting domains for the I477N target site selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 2D
Figure imgf000124_0001
myoC-2982 - GAGAAGAAGCUCU UUGC 17 1865 myoC-75 - AGAAGAAGCUCUUUGCC 17 465 myoC-2984 - UCUU UGCCUGGGACAAC 17 1866 myoC-2985 - AUCAAGCUCUCCAAGAU 17 1867 myoC-2986 + GUUGACGGUAGCAUCUG 17 1868 myoC-2987 + UUCU UGAAUGGGAUGGU 17 1869 myoC-85 + UUAUAGCGGUUCUUGAA 17 473 myoC-2989 + CUUAUAGCGGUUCUUGA 17 1870 myoC-2990 + UGUACU UAUAGCGGUUC 17 1871 myoC-81 + AAAGAGCUUCUUCUCCA 17 469 myoC-80 + CAAAGAGCU UCUUCUCC 17 468 myoC-2993 + GCAAAGAGCUUCUUCUC 17 1872 myoC-2994 + U C A AG U U G U CCC AG G C A 17 1873 myoC-2995 + AGGCUUUUCACAUCU UG 17 1874 myoC-78 + GGAGGCUUU UCACAUCU 17 445 myoC-2997 + UGGAGGCUU UUCACAUC 17 1875
Table 2E provides exemplary targeting domains for the I477N target site selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks.
Table 2E
Figure imgf000125_0001
Table 3A provides exemplary targeting domains for the mutational hotspot 477-502 target site selected according to the first tier parameters, and are selected based on the presence of a 5' G (except for MYOC-54 and -1546), close proximity and orientation to mutation and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single- stranded break nucleases (nickases).
In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
In an embodiment, two 20-mer guide RNAs are used to target two S. pyogenes Cas9 nucleases or two S. pyogenes Cas9 nickases, e.g., MYOC-1501 and MYOC-54, MYOC-59 and MYOC-1531, MYOC-59 and MYOC-1537, or MYOC-1546 and MYOC-1537 are used. In an embodiment, two 17-mer RNAs are used to target two Cas9 nucleases or two Cas9 nickases, e.g., MYOC-73 and MYOC-1502, or MYOC-1549 and MYOC-78 are used.
For convenience, it is noted that targeting domains for gRNAs MYOC-53, -54, 65-73 and 84-90 are also listed for targeting the I447N mutation. These targeting domains are useful for targeting both a correction of the 1447 point mutation and the mutational hotspot 477-502 target site.
Table 3A selected based on the presence of a 5' G (except for #54 and 1546), close proximity and orientation to mutation and orthogonality in the human
1st Tier genome
Target SEQ gRNA DNA
Targeting Domain Site Location ID Name Strand
Length NO
within lOObp
upstream of
myoC-53 GUCAACUUUGCUUAUGACAC 20 hotspot 439 within lOObp
upstream of
myoC-54 UU UGCUUAUGACACAGGCAC 20 hotspot 453 within lOObp
upstream of
myoC-69 + GGU UCUUGAAUGGGAUGGUC 20 hotspot 449 within lOObp
upstream of
myoC-437 + GUUGACGGUAGCAUCUGCUG 20 hotspot 788 within lOObp
upstream of
myoC-73 GCU UAUGACACAGGCAC 17 hotspot 451 within lOObp
upstream of
myoC-87 + GCGGUUCU UGAAUGGGA 17 hotspot 446 within lOObp
upstream of
myoC-599 + GACGG UAGCAUCUGCUG 17 hotspot 907 within lOObp
downstream of myoC-405 - GAAAAGCCUCCAAGCUG UAC 20 hotspot 769 within lOObp
downstream of myoC-407 - GCUG UACAGGCAAUGGCAGA 20 hotspot 771 within lOObp
downstream of myoC-413 - GAGAUGCUCAGGGCUCCUGG 20 hotspot 777 within lOObp
downstream of myoC-423 + CCAU UGCCUG UACAGCU UGG 20 hotspot 787 within lOObp
downstream of myoC-568 - G UACAGGCAAUGGCAGA 17 hotspot 889 within lOObp
downstream of myoC-78 + GGAGGCU U U UCACAUCU 17 hotspot 445
Table 3B provides exemplary targeting domains for the mutational hotspot 477-502 target site selected according to the second tier parameters and are selected based on the presence of a 5' G and reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
Table 3B
Figure imgf000127_0001
within lOObp
upstream of myoC-90 + GUCAUAAGCAAAGUUGA 17 hotspot 447
100-200bp
upstream of myoC-398 - GCCAAUGCCUUCAUCAUCUG 20 hotspot 768
100-200bp
upstream of myoC-439 + GUAGCUGCUGACGGUGUACA 20 hotspot 790
100-200bp
upstream of myoC-441 + GCCACAGAUGAUGAAGGCAU 20 hotspot 792
100-200bp
upstream of myoC-445 + GUUCGAGUUCCAGAUUCUCU 20 hotspot 796
100-200bp
upstream of myoC-558 - GGAACUCGAACAAACCU 17 hotspot 884
100-200bp
upstream of myoC-601 + GCUGCUGACGGUGUACA 17 hotspot 909
100-200bp
upstream of myoC-602 + GGUGCCACAGAUGAUGA 17 hotspot 910 within lOObp downstream of myoC-412 - GGAGAUGCUCAGGGCUCCUG 20 hotspot 776 within lOObp downstream of myoC-418 - GAAGGGAGAGCCAGCCAGCC 20 hotspot 782 within lOObp downstream of myoC-569 - GGCAGAAGGAGAUGCUC 17 hotspot 890 within lOObp downstream of myoC-570 - GCAGAAGGAGAUGCUCA 17 hotspot 891 within lOObp downstream of myoC-571 - GAGAUGCUCAGGGCUCC 17 hotspot 892 within lOObp downstream of myoC-573 - GAUGCUCAGGGCUCCUG 17 hotspot 894 within lOObp downstream of myoC-576 - GGGCUCCUGGGGGGAGC 17 hotspot 897 within lOObp myoC-578 - GGGGGGAGCAGGCUGAA 17 downstream of 899 hotspot within lOObp
downstream of
myoC-579 GGGAGAGCCAGCCAGCC 17 hotspot 900 within lOObp
downstream of
myoC-580 GGAGAGCCAGCCAGCCA 17 hotspot 901
100-200bp
downstream of
myoC-420 GAGCCAGCCAGCCAGGGCCC 20 hotspot 784
100-200bp
downstream of
myoC-510 + GG UGACCAUG U UCAUCCU UC 20 hotspot 852
100-200bp
downstream of
myoC-512 + GGAAAGCAG UCAAAGCUGCC 20 hotspot 854
100-200bp
downstream of
myoC-513 + G A A AG C AG U C A A AG C U G CC U 20 hotspot 855
100-200bp
downstream of
myoC-645 GU U U UCAU UAAUCCAGA 17 hotspot 945
100-200bp
downstream of
myoC-672 + GACCAUGU UCAUCCU UC 17 hotspot 972
100-200bp
myoC- downstream of
1591 + GCUGCCUGGGCCCUGGC 17 hotspot 1801
Table 3C provides exemplary targeting domains for the mutational hotspot 477-502 targeting site selected according to the third tier parameters and are selected based on reasonable proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. pyogenes single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp. Table 3C
Figure imgf000130_0001
100-200bp
upstream of myoC-397 UCUGGAACUCGAACAAACCU 20 hotspot 767
100-200bp upstream of myoC-438 + UGCUGAGGUGUAGCUGCUGA 20 hotspot 789
100-200bp upstream of myoC-440 + CAAGGUGCCACAGAUGAUGA 20 hotspot 791
100-200bp upstream of myoC-442 + CAU UGGCGACUGACUGCUUA 20 hotspot 793
100-200bp upstream of myoC-443 + CUUACGGAUGUU UGUCUCCC 20 hotspot 794
100-200bp upstream of myoC-444 + UGUUCGAGUUCCAGAUUCUC 20 hotspot 795
100-200bp upstream of myoC-446 + CAGAUUCUCUGGGU UCAGUU 20 hotspot 797
100-200bp upstream of myoC-556 ACUGAACCCAGAGAAUC 17 hotspot 882
100-200bp upstream of myoC-557 UGGAACUCGAACAAACC 17 hotspot 883
100-200bp upstream of myoC-559 AAUGCCUUCAUCAUCUG 17 hotspot 885
100-200bp upstream of myoC-600 + UGAGGUGUAGCUGCUGA 17 hotspot 908
100-200bp upstream of myoC-603 + ACAGAUGAUGAAGGCAU 17 hotspot 911
100-200bp upstream of myoC-604 + UGGCGACUGACUGCUUA 17 hotspot 912
100-200bp upstream of myoC-605 + ACGGAUGUUUGUCUCCC 17 hotspot 913
100-200bp upstream of myoC-606 + UCGAGUUCCAGAUUCUC 17 hotspot 914
100-200bp myoC-607 + CGAGU UCCAGAU UCUCU 17 upstream of 915 hotspot
100-200bp upstream of myoC-608 + AUUCUCUGGG UUCAGUU 17 hotspot 916 within lOObp downstream of myoC-406 CCUCCAAGCUGUACAGGCAA 20 hotspot 770 within lOObp downstream of myoC-408 AAUGGCAGAAGGAGAUGCUC 20 hotspot 772 within lOObp downstream of myoC-409 AUGGCAGAAGGAGAUGCUCA 20 hotspot 773 within lOObp downstream of myoC-410 AAGGAGAUGCUCAGGGCUCC 20 hotspot 774 within lOObp downstream of myoC-411 AGGAGAUGCUCAGGGCUCCU 20 hotspot 775 within lOObp downstream of myoC-414 AGAUGCUCAGGGCUCCUGGG 20 hotspot 778 within lOObp downstream of myoC-415 UCAGGGCUCCUGGGGGGAGC 20 hotspot 779 within lOObp downstream of myoC-416 UCCUGGGGGGAGCAGGCUGA 20 hotspot 780 within lOObp downstream of myoC-417 CCUGGGGGGAGCAGGCUGAA 20 hotspot 781 within lOObp downstream of myoC-419 AAGGGAGAGCCAGCCAGCCA 20 hotspot 783 within lOObp downstream of myoC-59 + CUUGGAGGCU UUUCACAUCU 20 hotspot 457 within lOObp downstream of myoC-421 + CCCUUCAGCCUGCUCCCCCC 20 hotspot 785 within lOObp downstream of myoC-422 + CUGCCAUUGCCUGUACAGCU 20 hotspot 786 within lOObp downstream of myoC-566 AAGCCUCCAAGCUGUAC 17 hotspot 887 within lOObp
downstream of myoC-567 - CCA AG CUGUACAGG C A A 17 hotspot 888 within lOObp downstream of myoC-572 - AGAUGCUCAGGGCUCCU 17 hotspot 893 within lOObp downstream of myoC-574 - AUGCUCAGGGCUCCUGG 17 hotspot 895 within lOObp downstream of myoC-575 - UGCUCAGGGCUCCUGGG 17 hotspot 896 within lOObp downstream of myoC-577 - UGGGGGGAGCAGGCUGA 17 hotspot 898 within lOObp downstream of myoC-583 + UUCAGCCUGCUCCCCCC 17 hotspot 904 within lOObp downstream of myoC-584 + CCAU UGCCUGUACAGCU 17 hotspot 905 within lOObp downstream of myoC-585 + UUGCCUGUACAGCUUGG 17 hotspot 906
100-200bp downstream of myoC-483 - CAAGUU UUCAUUAAUCCAGA 20 hotspot 825
100-200bp downstream of myoC-484 - UUAAUCCAGAAGGAUGAACA 20 hotspot 826
100-200bp downstream of myoC-485 - UGGUCACCAUCUAACUAUUC 20 hotspot 827
100-200bp downstream of myoC-486 - UAUUCAGGAAUUGUAGUCUG 20 hotspot 828
100-200bp downstream of myoC-487 - AUUCAGGAAUUGUAGUCUGA 20 hotspot 829
100-200bp downstream of myoC-509 + ACAAUUCCUGAAUAGUUAGA 20 hotspot 851
100-200bp downstream of myoC-511 + CUUCUGGAU UAAUGAAAACU 20 hotspot 853 myoC- 100-200bp
1576 + AGUCAAAGCUGCCUGGGCCC 20 downstream of 1802 hotspot
100-200bp
myoC- downstream of
1577 + AAAGCUGCCUGGGCCCUGGC 20 hotspot 1803
100-200bp
myoC- downstream of
1578 + CUGCCUGGGCCCUGGCUGGC 20 hotspot 1804
100-200bp
downstream of myoC-581 CC AG CC AG CC AG G G CCC 17 hotspot 902
100-200bp
downstream of myoC-646 AUCCAGAAGGAUGAACA 17 hotspot 946
100-200bp
downstream of myoC-647 UCACCAUCUAACUAUUC 17 hotspot 947
100-200bp
downstream of myoC-648 UCAGGAAU UGUAGUCUG 17 hotspot 948
100-200bp
downstream of myoC-649 CAGGAAUUGUAGUCUGA 17 hotspot 949
100-200bp
downstream of myoC-671 + AUUCCUGAAUAGUUAGA 17 hotspot 971
100-200bp
downstream of myoC-673 + CUGGAUUAAUGAAAACU 17 hotspot 973
100-200bp
downstream of myoC-674 + A AG C AG U C A A AG C U G CC 17 hotspot 974
100-200bp
downstream of myoC-675 + AGCAGUCAAAGCUGCCU 17 hotspot 975
100-200bp
myoC- downstream of
1590 + CAAAGCUGCCUGGGCCC 17 hotspot 1805
100-200bp
downstream of myoC-582 + CCUGGGCCCUGGCUGGC 17 hotspot 903
Table 3D provides exemplary targeting domains for the mutational hotspot 477-502 target site selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with S. aureus single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
Table 3D
gRNA DNA Target Site SEQID
Targeting Domain
Name Strand Length NO
myoC-396 - AUCUGGAACUCGAACAAACC 20 766 myoC-397 - UCUGGAACUCGAACAAACCU 20 767 myoC-2956 - AGACCCUGACCAUCCCAUUC 20 1846 myoC-2999 + UGUUUGUCUCCCAGGUUUGU 20 2792 myoC-3000 + GCAUUGGCGACUGACUGCUU 20 2793 myoC-3001 + U G U AC A AG GUGCCACAGAUG 20 2794 myoC-2965 + AAAGUUGACGGUAGCAUCUG 20 1853 myoC-2966 + CGGUUCUUGAAUGGGAUGGU 20 1854 myoC-66 + UACUUAUAGCGGUUCUUGAA 20 461 myoC-2968 + GUACUUAUAGCGGUUCUUGA 20 1855 myoC-2969 + UGCUGUACUUAUAGCGGUUC 20 1856 myoC-3003 - CCAAGCUGUACAGGCAAUGG 20 2795 myoC-3004 - AGCUGUACAGGCAAUGGCAG 20 2796 myoC-407 - GCUGUACAGGCAAUGGCAGA 20 771 myoC-3006 - CAAUGGCAGAAGGAGAUGCU 20 2797 myoC-3007 - GAAGGAGAUGCUCAGGGCUC 20 2798 myoC-410 - AAGGAGAUGCUCAGGGCUCC 20 774 myoC-411 - AGGAGAUGCUCAGGGCUCCU 20 775 myoC-412 - GGAGAUGCUCAGGGCUCCUG 20 776 myoC-413 - GAGAUGCUCAGGGCUCCUGG 20 777 myoC-414 - AGAUGCUCAGGGCUCCUGGG 20 778 myoC-3013 - GGGCUCCUGGGGGGAGCAGG 20 2799 myoC-3014 - CUCCUGGGGGGAGCAGGCUG 20 2800 myoC-416 - UCCUGGGGGGAGCAGGCUGA 20 780 myoC-417 - CCUGGGGGGAGCAGGCUGAA 20 781 myoC-3017 - UGGGGGGAGCAGGCUGAAGG 20 2801 myoC-3018 - UGAAGGGAGAGCCAGCCAGC 20 2802 myoC-3019 - UUUCCAAGUUUUCAUUAAUC 20 2803 myoC-3020 - CCAAGUUUUCAUUAAUCCAG 20 2804 myoC-3021 - GUUUUCAUUAAUCCAGAAGG 20 2805 myoC-3022 - AUGGUCACCAUCUAACUAUU 20 2806 myoC-485 - UGGUCACCAUCUAACUAUUC 20 827 myoC-3024 - AACUAUUCAGGAAUUGUAGU 20 2807 myoC-3025 - CUAUUCAGGAAUUGUAGUCU 20 2808 myoC-2974 + UGGAGGCUUUUCACAUCUUG 20 1859 myoC-59 + CUUGGAGGCU UUUCACAUCU 20 457 myoC-2976 + GCUUGGAGGCUUU UCACAUC 20 1860 myoC-422 + CUGCCAUUGCCUGUACAGCU 20 786 myoC-3030 + UCUGCCAU UGCCUGUACAGC 20 2809 myoC-3031 + GCCUGCUCCCCCCAGGAGCC 20 2810 myoC-421 + CCCUUCAGCCUGCUCCCCCC 20 785 myoC-3033 + UCCCU UCAGCCUGCUCCCCC 20 2811 myoC-3034 + UGGAAAGCAGUCAAAGCUGC 20 2812 myoC-511 + CU UCUGGAUUAAUGAAAACU 20 853 myoC-3036 + CCUUCUGGAUUAAUGAAAAC 20 2813 myoC-3037 + AUGU UCAUCCUUCUGGAUUA 20 2814 myoC-3038 + UGGUGACCAUGU UCAUCCUU 20 2815 myoC-3039 + ACGCCCUCAGACUACAAUUC 20 2816 myoC-557 - UGGAACUCG A AC A A ACC 17 883 myoC-558 - GGAACUCGAACAAACCU 17 884 myoC-2977 - CCCUGACCAUCCCAUUC 17 1861 myoC-3041 + UUGUCUCCCAGGUU UGU 17 2817 myoC-3042 + U UGGCGACUGACUGCUU 17 2818 myoC-3043 + ACAAGGUGCCACAGAUG 17 2819 myoC-2986 + GUUGACGGUAGCAUCUG 17 1868 myoC-2987 + U UCUUGAAUGGGAUGGU 17 1869 myoC-85 + UUAUAGCGGUUCUUGAA 17 473 myoC-2989 + CU UAUAGCGGUUCU UGA 17 1870 myoC-2990 + UGUACUUAUAGCGGU UC 17 1871 myoC-3045 - AGCUGUACAGGCAAUGG 17 2820 myoC-3046 - UGUACAGGCAAUGGCAG 17 2821 myoC-568 - GUACAGGCAAUGGCAGA 17 889 myoC-3048 - UGGCAGAAGGAGAUGCU 17 2822 myoC-3049 - GGAGAUGCUCAGGGCUC 17 2823 myoC-571 - GAGAUGCUCAGGGCUCC 17 892 myoC-572 - AGAUGCUCAGGGCUCCU 17 893 myoC-573 - GAUGCUCAGGGCUCCUG 17 894 myoC-574 - AUGCUCAGGGCUCCUGG 17 895 myoC-575 - UGCUCAGGGCUCCUGGG 17 896 myoC-3055 - CUCCUGGGGGGAGCAGG 17 2824 myoC-3056 - CUGGGGGGAGCAGGCUG 17 2825 myoC-577 - UGGGGGGAGCAGGCUGA 17 898 myoC-578 - GGGGGGAGCAGGCUGAA 17 899 myoC-3059 - GGGGAGCAGGCUGAAGG 17 2826 myoC-3060 - AGGGAGAGCCAGCCAGC 17 2827 myoC-3061 - CCAAG UUUUCAUUAAUC 17 2828 myoC-3062 - AGUU UUCAUUAAUCCAG 17 2829 myoC-3063 - UUCAU UAAUCCAGAAGG 17 2830 myoC-3064 - GUCACCAUCUAACUAUU 17 2831 myoC-647 - UCACCAUCUAACUAU UC 17 947 myoC-3066 - UAU UCAGGAAU UG UAG U 17 2832 myoC-3067 - U UCAGGAAU UGUAGUCU 17 2833 myoC-2995 + AGGCU U U UCACAUCU UG 17 1874 myoC-78 + GGAGGCU U U UCACAUCU 17 445 myoC-2997 + UGGAGGCU U U UCACAUC 17 1875 myoC-584 + CCAU UGCCUGUACAGCU 17 905 myoC-3072 + GCCAU UGCCUG UACAGC 17 2834 myoC-3073 + UGCUCCCCCCAGGAGCC 17 2835 myoC-583 + U UCAGCCUGCUCCCCCC 17 904 myoC-3075 + CU UCAGCCUGCUCCCCC 17 2836 myoC-3076 + A A AG C AG U C A A AG C U G C 17 2837 myoC-673 + CUGGAU UAAUGAAAACU 17 973 myoC-3078 + UCUGGAU UAAUGAAAAC 17 2838 myoC-3079 + U UCAUCCU UCUGGAU UA 17 2839 myoC-3080 + UGACCAUG U UCAUCCU U 17 2840 myoC-3081 + CCCUCAGACUACAAU UC 17 2841
Table 3E provides exemplary targeting domains for the mutational hotspot 477-502 target site selected based on close proximity to mutation. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a N. meningitidis Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with N. meningitidis single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks.
Table 3E
Figure imgf000137_0001
Table 4 A provides exemplary targeting domains for knocking out the MYOC gene selected according to first tier parameters, and are selected based on the presence of a 5' G, close proximity to the start codon (located in exon 1) and orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single- stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 4A
Figure imgf000138_0001
Table 4B provides exemplary targeting domains for knocking out the MYOC gene selected according to the second tier parameters and are selected based on the presence of a 5' G close proximity to the start codon (located in exon 1). In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 4B
Figure imgf000139_0001
myoC-139 - GCGGGAGCGGGACCAGC 17 534 myoC-140 - GCAAGAAAAUGAGAAUC 17 535 myoC-141 - GAAUCUGGCCAGGAGG U 17 536 myoC-142 - G U U G G A A AG C AG C AG CC 17 537 myoC-143 - G G A A AG C AG C AG CC AG G 17 538 myoC-144 - GCAGCCAGGAGG UAGCA 17 539 myoC-145 - GG UAGCAAGGCUGAGAA 17 540 myoC-146 - G UAGCAAGGCUGAGAAG 17 541 myoC-150 + GCAG UG UCUCGGGUCUG 17 542 myoC-151 + GCUGCU U UCCAACCUCC 17 543 myoC-153 + GGCAG UCUCCAACUCUC 17 544 myoC-154 + GG UCCCGCUCCCGCCUC 17 545 myoC-155 + GUCCCGCUCCCGCCUCA 17 546 myoC-156 + GCCCCUCCUGGGUCUCC 17 547 myoC-158 + GG UGGAGGAGGCUCUCC 17 548 myoC-159 + G UGGAGGAGGCUCUCCA 17 549 myoC-162 + GAGCU U UGG UGGCCUCC 17 550 myoC-164 + GGAUGACUGACAUGGCC 17 551 myoC-165 + GCUCUGCUCUGGGCAGC 17 552 myoC-166 + GGGCAGCUGGAU UCAU U 17 553 myoC-168 + GGGACUGGCCACACUGA 17 554
Table 4C provides exemplary targeting domains for knocking out the MYOC gene selected according to the third tier parameters and are selected to fall within the coding sequence (exon 1 , 2 or 3 of the MYOC gene). In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. pyogenes Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5 ' ends of the gRNAs is 0-50bp.
Table 4C
Figure imgf000140_0001
myoC-170 - AGCUGUCCAGCUGCUGCUUC 20 1 556 myoC-171 - UGCUUCUGGCCUGCCUGGUG 20 1 557 myoC-172 - CCUGCCUGGUGUGGGAUGUG 20 1 558 myoC-173 - CUGCCUGGUGUGGGAUGUGG 20 1 559 myoC-174 - UGGUGUGGGAUGUGGGGGCC 20 1 560 myoC-175 - CAGGACAGCUCAGCUCAGGA 20 1 561 myoC-176 - AGGAAGGCCAAUGACCAGAG 20 1 562 myoC-177 - AUGCCAGUAUACCUUCAGUG 20 1 563 myoC-178 - CAGCUGCCCAGAGCAGAGCC 20 1 564 myoC-179 - CAGCACCCAACGCUUAGACC 20 1 565 myoC-180 - CACCCAACGCU U AG ACCUGG 20 1 566 myoC-181 - CAAAGCUCGACUCAGCUCCC 20 1 567 myoC-182 - CCUCCUCCACCAAUUGACCU 20 1 568 myoC-183 - CCACCAAUUGACCUUGGACC 20 1 569 myoC-184 - UGACCU UGGACCAGGCUGCC 20 1 570 myoC-185 - UGCCAGGCCCCAGGAGACCC 20 1 571 myoC-186 - CAGGCCCCAGGAGACCCAGG 20 1 572 myoC-187 - AGGCCCCAGGAGACCCAGGA 20 1 573 myoC-188 - AGACCCAGGAGGGGCUGCAG 20 1 574 myoC-189 - AGAGGGAGCUGGGCACCCUG 20 1 575 myoC-190 - UGGGCACCCUGAGGCGGGAG 20 1 576 myoC-191 - CCUCCGAGACAAGUCAGUUC 20 1 577 myoC-192 - CCGAGACAAGUCAGUUCUGG 20 1 578 myoC-193 - AGGAAGAGAAGAAGCGACUA 20 1 579 myoC-194 - A AG G C A AG A A A A U G AG A A U C 20 1 580 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 1 581 myoC-196 - AAAAUGAGAAUCUGGCCAGG 20 1 582 myoC-197 - UGAGAAUCUGGCCAGGAGGU 20 1 583 myoC-198 - AGGAGGUAGCAAGGCUGAGA 20 1 584 myoC-199 - CCCAGACCCGAGACACUGCU 20 1 585 myoC-200 - CCAGACCCGAGACACUGCUC 20 1 586 myoC-201 - ACUGCUCGGGCUGUGCCACC 20 1 587 myoC-202 + CACAGCCCGAGCAGUGUCUC 20 1 588 myoC-203 + CCCGAGCAGUGUCUCGGGUC 20 1 589 myoC-204 + CCGAGCAGUGUCUCGGGUCU 20 1 590 myoC-205 + CGAGCAGUGUCUCGGGUCUG 20 1 591 myoC-206 + UGUCUCGGGUCUGGGGACAC 20 1 592 myoC-207 + UUCUCAGCCUUGCUACCUCC 20 1 593 myoC-208 + CCUCCAGAACUGACUUGUCU 20 1 594 myoC-209 + CCAGAACUGACUUGUCUCGG 20 1 595 myoC-210 + CAGUCUCCAACUCUCUGGUU 20 1 596 myoC-211 + AGUCUCCAACUCUCUGGUU U 20 1 597 myoC-212 + CUCUGGUU UGGGUUUCCAGC 20 1 598 myoC-213 + CUGGUCCCGCUCCCGCCUCA 20 1 599 myoC-214 + CUCCCUCUGCAGCCCCUCCU 20 1 600 myoC-215 + CAGCCCCUCCUGGGUCUCCU 20 1 601 myoC-216 + AGCCCCUCCUGGGUCUCCUG 20 1 602 myoC-217 + CUCCUGGGUCUCCUGGGGCC 20 1 603 myoC-218 + UCUCCUGGGGCCUGGCAGCC 20 1 604 myoC-219 + CAGCCUGGUCCAAGGUCAAU 20 1 605 myoC-220 + CCUGGUCCAAGGUCAAU UGG 20 1 606 myoC-221 + CCAAGGUCAAUUGGUGGAGG 20 1 607 myoC-222 + AU UGG UGGAGGAGGCUCUCC 20 1 608 myoC-223 + UUGGUGGAGGAGGCUCUCCA 20 1 609 myoC-224 + CAGGGAGCUGAGUCGAGCUU 20 1 610 myoC-225 + UGGCCUCCAGGUCUAAGCGU 20 1 611 myoC-226 + UGCUGUCUCUCUGUAAGUUA 20 1 612 myoC-227 + UAAGUUAUGGAUGACUGACA 20 1 613 myoC-228 + UAUGGAUGACUGACAUGGCC 20 1 614 myoC-229 + ACAUGGCCUGGCUCUGCUCU 20 1 615 myoC-230 + CUGGCUCUGCUCUGGGCAGC 20 1 616 myoC-231 + CUCUGGGCAGCUGGAUUCAU 20 1 617 myoC-232 + UCUGGGCAGCUGGAUUCAU U 20 1 618 myoC-233 + AU UGGGACUGGCCACACUGA 20 1 619 myoC-234 + UGGCCACACUGAAGGUAUAC 20 1 620 myoC-235 + CACUGAAGGUAUACUGGCAU 20 1 621 myoC-236 + UAUACUGGCAUCGGCCACUC 20 1 622 myoC-237 + CU UCCUGAGCUGAGCUGUCC 20 1 623 myoC-238 + U G G CCCCCAC AU CCCAC ACC 20 1 624 myoC-239 + CCCCACAUCCCACACCAGGC 20 1 625 myoC-240 + AGAAGCAGCAGCUGGACAGC 20 1 626 myoC-241 + AGCUGGACAGCUGGCAUCUC 20 1 627 myoC-242 - CACGU UGCUGCAGCUUU 17 1 628 myoC-243 - UGUCCAGCUGCUGCUUC 17 1 629 myoC-244 - UUCUGGCCUGCCUGGUG 17 1 630 myoC-245 - UCUGGCCUGCCUGGUGU 17 1 631 myoC-246 - CUGCCUGGUGUGGGAUG 17 1 632 myoC-247 - UGCCUGGUGUGGGAUGU 17 1 633 myoC-248 - CCUGGUGUGGGAUGUGG 17 1 634 myoC-249 - UGUGGGAUGUGGGGGCC 17 1 635 myoC-250 - CCAGGACAGCUCAGCUC 17 1 636 myoC-251 - AAGGCCAAUGACCAGAG 17 1 637 myoC-252 - CCAGUAUACCU UCAGUG 17 1 638 myoC-253 - CUGCCCAGAGCAGAGCC 17 1 639 myoC-254 - CACCCAACGCU U AG ACC 17 1 640 myoC-255 - CCAACGCUUAGACCUGG 17 1 641 myoC-256 - AGCUCGACUCAGCUCCC 17 1 642 myoC-257 - CCUCCACCAAUUGACCU 17 1 643 myoC-258 - CCAAUUGACCU UGGACC 17 1 644 myoC-259 - CCUUGGACCAGGCUGCC 17 1 645 myoC-260 - CCAGGCUGCCAGGCCCC 17 1 646 myoC-261 - CAGGCCCCAGGAGACCC 17 1 647 myoC-262 - CCCCAGGAGACCCAGGA 17 1 648 myoC-263 - CCCAGGAGACCCAGGAG 17 1 649 myoC-264 - CCCAGGAGGGGCUGCAG 17 1 650 myoC-265 - CCAGGAGGGGCUGCAGA 17 1 651 myoC-266 - AGCUGGGCACCCUGAGG 17 1 652 myoC-267 - CACCCUGAGGCGGGAGC 17 1 653 myoC-268 - AACCCAAACCAG AG AG U 17 1 654 myoC-269 - CCG AG AC A AG U C AG U U C 17 1 655 myoC-270 - AG AC A AG U C AG U U C U G G 17 1 656 myoC-271 - AAGAGAAGAAGCGACUA 17 1 657 myoC-272 - AAAAUGAGAAUCUGGCC 17 1 658 myoC-273 - AUGAGAAUCUGGCCAGG 17 1 659 myoC-274 - AGGUAGCAAGGCUGAGA 17 1 660 myoC-275 - AGACCCGAGACACUGCU 17 1 661 myoC-276 + CAGCCCGAGCAGUGUCU 17 1 662 myoC-277 + AGCCCGAGCAGUGUCUC 17 1 663 myoC-278 + AGCAGUGUCUCGGGUCU 17 1 664 myoC-279 + CUCGGGUCUGGGGACAC 17 1 665 myoC-280 + UCAGCCUUGCUACCUCC 17 1 666 myoC-281 + CCAGAACUGACUUGUCU 17 1 667 myoC-282 + CUGACU UGUCUCGGAGG 17 1 668 myoC-283 + UCGGAGGAGGUUGCUGU 17 1 669 myoC-284 + UCUCCAACUCUCUGGUU 17 1 670 myoC-285 + CUCCAACUCUCUGGUUU 17 1 671 myoC-286 + UGGUUUGGGU UUCCAGC 17 1 672 myoC-287 + CCCUCUGCAGCCCCUCC 17 1 673 myoC-288 + CCUCUGCAGCCCCUCCU 17 1 674 myoC-289 + CCCCUCCUGGGUCUCCU 17 1 675 myoC-290 + CCCUCCUGGGUCUCCUG 17 1 676 myoC-291 + CUGGGUCUCCUGGGGCC 17 1 677 myoC-292 + CCUGGGGCCUGGCAGCC 17 1 678 myoC-293 + CCUGGCAGCCUGGUCCA 17 1 679 myoC-294 + CCUGGUCCAAGGUCAAU 17 1 680 myoC-295 + CCAAGGUCAAUUGGUGG 17 1 681 myoC-296 + AGGUCAAU UGGUGGAGG 17 1 682 myoC-297 + CCUCCAGGUCUAAGCGU 17 1 683 myoC-298 + CUCCAGGUCUAAGCGUU 17 1 684 myoC-299 + UGUCUCUCUGUAAGUUA 17 1 685 myoC-300 + AUGGCCUGGCUCUGCUC 17 1 686 myoC-301 + UGGCCUGGCUCUGCUCU 17 1 687 myoC-302 + UGGGCAGCUGGAU UCAU 17 1 688 myoC-303 + CCACACUGAAGGUAUAC 17 1 689 myoC-304 + UGAAGGUAUACUGGCAU 17 1 690 myoC-305 + ACUGGCAUCGGCCACUC 17 1 691 myoC-306 + UCGGCCACUCUGGUCAU 17 1 692 myoC-307 + CCUGAGCUGAGCUGUCC 17 1 693 myoC-308 + CCCCCACAUCCCACACC 17 1 694 myoC-309 + C AC A U CCC AC ACC AG G C 17 1 695 myoC-310 + AGGCCAGAAGCAGCAGC 17 1 696 myoC-311 + AGCAGCAGCUGGACAGC 17 1 697 myoC-312 + UGGACAGCUGGCAUCUC 17 1 698 myoC-313 - CU UUUAAUGCAGU UUCUACG 20 2 699 myoC-314 - UGCAGUU UCUACGUGGAAUU 20 2 700 myoC-315 - UACGUGGAAUUUGGACACU U 20 2 701 myoC-316 - UUUGGACACUU UGGCCU UCC 20 2 702 myoC-317 - UCCUGCU UCCCGAAUUU UGA 20 2 703 myoC-318 - AU UUUGAAGGAGAGCCCAUC 20 2 704 myoC-319 - AGAGCCCAUCUGGCUAUCUC 20 2 705 myoC-320 - CCAUCUGGCUAUCUCAGGAG 20 2 706 myoC-321 - UGGCUAUCUCAGGAGUGGAG 20 2 707 myoC-322 - GGCUAUCUCAGGAGUGGAGA 20 2 708 myoC-323 - AGGAGUGGAGAGGGAGACAC 20 2 709 myoC-324 + G A AG A A AC UUAACUUCAUAC 20 2 710 myoC-325 + CCACUCCUGAGAUAGCCAGA 20 2 711 myoC-326 + CACUCCUGAGAUAGCCAGAU 20 2 712 myoC-327 + AUGGGCUCUCCUUCAAAAUU 20 2 713 myoC-328 + UGGGCUCUCCUUCAAAAUUC 20 2 714 myoC-329 + UCCU UCAAAAUUCGGGAAGC 20 2 715 myoC-330 + AGCAGGAACUUCAGUUAGCU 20 2 716 myoC-331 + UUAGCUCGGACUUCAG UUCC 20 2 717 myoC-332 + CUCGGACU UCAGUUCCUGGA 20 2 718 myoC-333 - UUAAUGCAGUUUCUACG 17 2 719 myoC-334 - AGUUUCUACGUGGAAU U 17 2 720 myoC-335 - GUGGAAUU UGGACACUU 17 2 721 myoC-336 - GGACACU UUGGCCUUCC 17 2 722 myoC-337 - UGCUUCCCGAAUU UUGA 17 2 723 myoC-338 - UUGAAGGAGAGCCCAUC 17 2 724 myoC-339 - GCCCAUCUGGCUAUCUC 17 2 725 myoC-340 - UCUGGCUAUCUCAGGAG 17 2 726 myoC-341 - CUAUCUCAGGAGUGGAG 17 2 727 myoC-342 - UAUCUCAGGAGUGGAGA 17 2 728 myoC-343 - AGUGGAGAGGGAGACAC 17 2 729 myoC-344 + GAAACU U AACU UCAU AC 17 2 730 myoC-345 + CUCCUGAGAUAGCCAGA 17 2 731 myoC-346 + UCCUGAGAUAGCCAGAU 17 2 732 myoC-347 + GGCUCUCCU UCAAAAUU 17 2 733 myoC-348 + GCUCUCCUUCAAAAUUC 17 2 734 myoC-349 + U U C A A A A UUCGGGAAGC 17 2 735 myoC-350 + AGGAACUUCAGUUAGCU 17 2 736 myoC-351 + GCUCGGACU UCAGUUCC 17 2 737 myoC-352 + GGACUUCAGU UCCUGGA 17 2 738 myoC-353 - UU UCUGAAU UUACCAGGAUG 20 3 739 myoC-354 - CAGGAUGUGGAGAACUAGU U 20 3 740 myoC-355 - AGGAUGUGGAGAACUAGUUU 20 3 741 myoC-356 - UGUGGAGAACUAGUUUGGGU 20 3 742 myoC-357 - AG AACAGCAG AAACAAU U AC 20 3 743 myoC-358 - GAAACAAUUACUGGCAAGUA 20 3 744 myoC-359 - UUACUGGCAAGUAUGGUGUG 20 3 745 myoC-360 - GCCCACCUACCCCUACACCC 20 3 746 myoC-361 - CCUACACCCAGGAGACCACG 20 3 747 myoC-362 - ACGUGGAGAAUCGACACAGU 20 3 748 myoC-363 - GAGAAUCGACACAGUUGGCA 20 3 749 myoC-364 - AGUUGGCACGGAUGUCCGCC 20 3 750 myoC-365 - CCUCAUCAGCCAGUU UAUGC 20 3 751 myoC-366 - CUCAUCAGCCAGU UUAUGCA 20 3 752 myoC-367 - UAUGCAGGGCUACCCUUCUA 20 3 753 myoC-368 - CUAAGGUUCACAUACUGCCU 20 3 754 myoC-369 - UCACAUACUGCCUAGGCCAC 20 3 755 myoC-370 - GCCUAGGCCACUGGAAAGCA 20 3 756 myoC-371 - CCUAGGCCACUGG A A AG C AC 20 3 757 myoC-372 - ACUGGAAAGCACGGGUGCUG 20 3 758 myoC-373 - CACGGGUGCUGUGGUG UACU 20 3 759 myoC-374 - ACGGGUGCUGUGGUGUACUC 20 3 760 myoC-375 - CGGGUGCUG UGGUGUACUCG 20 3 761 myoC-376 - CUCGGGGAGCCUCUAU UUCC 20 3 762 myoC-377 - UCGGGGAGCCUCUAUU UCCA 20 3 763 myoC-1 - GCUGAAUACCGAGACAGUGA 20 3 398 myoC-2 - CGAGACAGUGAAGGCUGAGA 20 3 405 myoC-3 - AAGGCUGAGAAGGAAAUCCC 20 3 406 myoC-4 - GAGAAGGAAAUCCCUGGAGC 20 3 399 myoC-5 - AUCCCUGGAGCUGGCUACCA 20 3 407 myoC-6 - ACGG ACAGU UCCCG U AU UCU 20 3 408 myoC-7 - CGGACAGUUCCCGUAUUCUU 20 3 409 myoC-385 - GGACAGUUCCCGUAUUCUUG 20 3 764 myoC-9 - CAGU UCCCGUAUUCUUGGGG 20 3 410 myoC-10 - GUAUUCUUGGGGUGGCUACA 20 3 388 myoC-11 - UGGCUACACGGACAUUGACU 20 3 411 myoC-12 - CACGGACAUUGACU UGGCUG 20 3 412 myoC-13 - GACU UGGCUGUGGAUGAAGC 20 3 400 myoC-14 - CUGUGGAUGAAGCAGGCCUC 20 3 413 myoC-15 - UGUGGAUGAAGCAGGCCUCU 20 3 414 myoC-16 - GGUCAUU UACAGCACCGAUG 20 3 389 myoC-17 - UACAGCACCGAUGAGGCCAA 20 3 415 myoC-395 - CAAACUGAACCCAGAGAAUC 20 3 765 myoC-396 - AUCUGGAACUCGAACAAACC 20 3 766 myoC-397 - UCUGGAACUCGAACAAACCU 20 3 767 myoC-398 - GCCAAUGCCU UCAUCAUCUG 20 3 768 myoC-53 - GUCAACUUUGCU UAUGACAC 20 3 439 myoC-54 - UU UGCUUAUGACACAGGCAC 20 3 453 myoC-55 - CAUGAUUGACUACAACCCCC 20 3 454 myoC-56 - UGGAGAAGAAGCUCUUUGCC 20 3 455 myoC-57 - GGAGAAGAAGCUCUUUGCCU 20 3 440 myoC-58 - UGCCUGGGACAACUUGAACA 20 3 456 myoC-405 - GAAAAGCCUCCAAGCUGUAC 20 3 769 myoC-406 - CCUCCAAGCUGUACAGGCAA 20 3 770 myoC-407 - GCUGUACAGGCAAUGGCAGA 20 3 771 myoC-408 - AAUGGCAGAAGGAGAUGCUC 20 3 772 myoC-409 - AUGGCAGAAGGAGAUGCUCA 20 3 773 myoC-410 - AAGGAGAUGCUCAGGGCUCC 20 3 774 myoC-411 - AGGAGAUGCUCAGGGCUCCU 20 3 775 myoC-412 - GGAGAUGCUCAGGGCUCCUG 20 3 776 myoC-413 - GAGAUGCUCAGGGCUCCUGG 20 3 777 myoC-414 - AGAUGCUCAGGGCUCCUGGG 20 3 778 myoC-415 - UCAGGGCUCCUGGGGGGAGC 20 3 779 myoC-416 - UCCUGGGGGGAGCAGGCUGA 20 3 780 myoC-417 - CCUGGGGGGAGCAGGCUGAA 20 3 781 myoC-418 - GAAGGGAGAGCCAGCCAGCC 20 3 782 myoC-419 - AAGGGAGAGCCAGCCAGCCA 20 3 783 myoC-420 - GAGCCAGCCAGCCAGGGCCC 20 3 784 myoC-421 + CCCUUCAGCCUGCUCCCCCC 20 3 785 myoC-422 + CUGCCAU UGCCUGUACAGCU 20 3 786 myoC-423 + CCAUUGCCUGUACAGCUUGG 20 3 787 myoC-59 + CU UGGAGGCUUU UCACAUCU 20 3 457 myoC-60 + GACCAUGUUCAAGU UGUCCC 20 3 441 myoC-61 + AGGCAAAGAGCUUCUUCUCC 20 3 458 myoC-62 + GGCAAAGAGCU UCUUCUCCA 20 3 448 myoC-63 + GCAAAGAGCUUCUUCUCCAG 20 3 442 myoC-64 + CAAAGAGCUUCUUCUCCAGG 20 3 459 myoC-65 + UCAUGCUGCUGUACUUAUAG 20 3 460 myoC-66 + UACUUAUAGCGGU UCUUGAA 20 3 461 myoC-67 + ACU UAUAGCGGUUCUUGAAU 20 3 462 myoC-68 + AUAGCGGUUCUUGAAUGGGA 20 3 443 myoC-69 + GGU UCUUGAAUGGGAUGGUC 20 3 449 myoC-70 + GUUCU UGAAUGGGAUGGUCA 20 3 450 myoC-71 + UGUGUCAUAAGCAAAGUUGA 20 3 463 myoC-437 + GUUGACGGUAGCAUCUGCUG 20 3 788 myoC-438 + UGCUGAGGUGUAGCUGCUGA 20 3 789 myoC-439 + GUAGCUGCUGACGGUGUACA 20 3 790 myoC-440 + CAAGGUGCCACAGAUGAUGA 20 3 791 myoC-441 + GCCACAGAUGAUGAAGGCAU 20 3 792 myoC-442 + CAU UGGCGACUGACUGCUUA 20 3 793 myoC-443 + CU UACGGAUGUUUGUCUCCC 20 3 794 myoC-444 + UGU UCGAGUUCCAGAU UCUC 20 3 795 myoC-445 + GUUCGAGUUCCAGAUUCUCU 20 3 796 myoC-446 + CAGAU UCUCUGGGUUCAGUU 20 3 797 myoC-447 + UCUCUGGGU UCAGUUUGGAG 20 3 798 myoC-448 + GUUCAGU UUGGAGAGGACAA 20 3 799 myoC-449 + GGAGAGGACAAUGGCACCUU 20 3 800 myoC-18 + AAUGGCACCUUUGGCCUCAU 20 3 416 myoC-19 + CGGUGCUGUAAAUGACCCAG 20 3 417 myoC-20 + GUGUAGCCACCCCAAGAAUA 20 3 390 myoC-21 + UGUAGCCACCCCAAGAAUAC 20 3 418 myoC-22 + AAGAAUACGGGAACUGUCCG 20 3 419 myoC-23 + UGUCCGUGGUAGCCAGCUCC 20 3 420 myoC-24 + GUCCGUGGUAGCCAGCUCCA 20 3 391 myoC-25 + CUUCUCAGCCUUCACUGUCU 20 3 421 myoC-26 + CUCAUAUCU UAUGACAGUUC 20 3 422 myoC-459 + CAGU UCUGGACUCAGCGCCC 20 3 801 myoC-460 + ACUCAGCGCCCUGGAAAUAG 20 3 802 myoC-461 + ACAGCACCCGUGCUUUCCAG 20 3 803 myoC-462 + CCCGUGCUU UCCAGUGGCCU 20 3 804 myoC-463 + GGCAG UAUGUGAACCUUAGA 20 3 805 myoC-464 + GCAGUAUGUGAACCUUAGAA 20 3 806 myoC-465 + AAGGGUAGCCCUGCAUAAAC 20 3 807 myoC-466 + CCUGCAUAAACUGGCUGAUG 20 3 808 myoC-467 + U G AG G U C AU ACU CA AAA ACC 20 3 809 myoC-468 + GGUCAUACU C A A A A ACC U G G 20 3 810 myoC-469 + AACUGUGUCGAUUCUCCACG 20 3 811 myoC-470 + CGAU UCUCCACGUGGUCUCC 20 3 812 myoC-471 + GAUUCUCCACGUGGUCUCCU 20 3 813 myoC-472 + CCACGUGGUCUCCUGGG UGU 20 3 814 myoC-473 + CACGUGGUCUCCUGGG UGUA 20 3 815 myoC-474 + ACGUGGUCUCCUGGGUGUAG 20 3 816 myoC-475 + GGUCUCCUGGGUGUAGGGGU 20 3 817 myoC-476 + CUCCUGGGUGUAGGGG UAGG 20 3 818 myoC-477 + UCCUGGGUGUAGGGGUAGGU 20 3 819 myoC-478 + GGUGUAGGGGUAGGUGGGCU 20 3 820 myoC-479 + GUGUAGGGGUAGGUGGGCU U 20 3 821 myoC-480 + UGUAGGGGUAGGUGGGCUUG 20 3 822 myoC-481 + UCUGCUGU UCUCAGCG UGAG 20 3 823 myoC-482 + CAAACUAG UUCUCCACAUCC 20 3 824 myoC-483 - CAAGU UUUCAUUAAUCCAGA 20 3 825 myoC-484 - UUAAUCCAGAAGGAUGAACA 20 3 826 myoC-485 - UGGUCACCAUCUAACUAUUC 20 3 827 myoC-486 - UAUUCAGGAAUUGUAGUCUG 20 3 828 myoC-487 - AU UCAGGAAU UGUAGUCUGA 20 3 829 myoC-488 - UUAUCUUCUGUCAGCAUUUA 20 3 830 myoC-489 - UAUCUUCUG UCAGCAU UUAU 20 3 831 myoC-490 - GUUCAAGUUUUCUUGUGAUU 20 3 832 myoC-491 - UUCAAGUUU UCUUGUGAUUU 20 3 833 myoC-492 - UCAAGUUUUCU UGUGAU UUG 20 3 834 myoC-493 - GAUUUGGGGCAAAAGCUGUA 20 3 835 myoC-494 - CAU UGCUCUUGCAUGU UACA 20 3 836 myoC-495 - A U A A A A AG C A U A AC U U C U A A 20 3 837 myoC-496 - AGGAAGCAGAAUAGCUCCUC 20 3 838 myoC-497 - UAAGAUGCAU UUACUACAGU 20 3 839 myoC-498 - UGCUUCAGAUAGAAUACAGU 20 3 840 myoC-499 - GCUUCAGAUAGAAUACAGUU 20 3 841 myoC-500 + AAUUUUAUUUCACAAUGUAA 20 3 842 myoC-501 + AU UUUAUUUCACAAUGUAAA 20 3 843 myoC-502 + AUCUUACUUAUAUUCGAUGC 20 3 844 myoC-503 + UUAUAU UCGAUGCUGGCCAG 20 3 845 myoC-504 + AGAAGU UAUGCUUU UUAUUG 20 3 846 myoC-505 + AUGCUUUUUAUUGUGGCUUG 20 3 847 myoC-506 + CAUGUAACAUGCAAGAG C A A 20 3 848 myoC-507 + AUGCAAGAGCAAUGGU UUUC 20 3 849 myoC-508 + UAAAUGCUGACAGAAGAUAA 20 3 850 myoC-509 + ACAAUUCCUGAAUAGUUAGA 20 3 851 myoC-510 + GGUGACCAUGUUCAUCCUUC 20 3 852 myoC-511 + CUUCUGGAUUAAUGAAAACU 20 3 853 myoC-512 + G G A A AG C AG U C A A AG C U G CC 20 3 854 myoC-513 + GAAAGCAGUCAAAGCUGCCU 20 3 855 myoC-514 - CUGAAUUUACCAGGAUG 17 3 856 myoC-515 - GAUGUGGAGAACUAGU U 17 3 857 myoC-516 - AUGUGGAGAACUAGUU U 17 3 858 myoC-517 - GGAGAACUAGU UUGGGU 17 3 859 myoC-518 - ACAGCAGAAACAAUUAC 17 3 860 myoC-519 - ACAAUUACUGGCAAGUA 17 3 861 myoC-520 - CUGGCAAGUAUGGUGUG 17 3 862 myoC-521 - CACCUACCCCUACACCC 17 3 863 myoC-522 - ACACCCAGGAGACCACG 17 3 864 myoC-523 - UGGAGAAUCGACACAGU 17 3 865 myoC-524 - A A U CG AC AC AG U U G G C A 17 3 866 myoC-525 - UGGCACGGAUGUCCGCC 17 3 867 myoC-526 - CAUCAGCCAGUU UAUGC 17 3 868 myoC-527 - AUCAGCCAGUUUAUGCA 17 3 869 myoC-528 - GCAGGGCUACCCUUCUA 17 3 870 myoC-529 - AGGUUCACAUACUGCCU 17 3 871 myoC-530 - CAUACUGCCUAGGCCAC 17 3 872 myoC-531 - UAGGCCACUGGAAAGCA 17 3 873 myoC-532 - AGGCCACUGGAAAGCAC 17 3 874 myoC-533 - G G A A AG CACG G G U G CU G 17 3 875 myoC-534 - GGGUGCUGUGGUGUACU 17 3 876 myoC-535 - GGUGCUGUGGUGUACUC 17 3 877 myoC-536 - GUGCUGUGGUGUACUCG 17 3 878 myoC-537 - GGGGAGCCUCUAUUUCC 17 3 879 myoC-538 - GGGAGCCUCUAU UUCCA 17 3 880 myoC-27 - GAAUACCGAGACAGUGA 17 3 392 myoC-28 - GACAGUGAAGGCUGAGA 17 3 401 myoC-29 - GCUGAGAAGGAAAUCCC 17 3 423 myoC-30 - AAGGAAAUCCCUGGAGC 17 3 424 myoC-31 - CCUGGAGCUGGCUACCA 17 3 425 myoC-544 - GACAGU UCCCGUAUUCU 17 3 881 myoC-33 - ACAGU UCCCGUAUUCUU 17 3 426 myoC-34 - CAGU UCCCGUAUUCUUG 17 3 427 myoC-35 - UUCCCGUAUUCUUGGGG 17 3 428 myoC-36 - UUCUUGGGGUGGCUACA 17 3 429 myoC-37 - CUACACGGACAUUGACU 17 3 394 myoC-38 - GGACAU UGACUUGGCUG 17 3 402 myoC-39 - UUGGCUGUGGAUGAAGC 17 3 430 myoC-40 - UGGAUGAAGCAGGCCUC 17 3 431 myoC-41 - GGAUGAAGCAGGCCUCU 17 3 403 myoC-42 - CAU UUACAGCACCGAUG 17 3 432 myoC-43 - AGCACCGAUGAGGCCAA 17 3 433 myoC-556 - AC U G A ACCC AG AG A A U C 17 3 882 myoC-557 - UGGAACUCGAACAAACC 17 3 883 myoC-558 - GGAACUCGAACAAACCU 17 3 884 myoC-559 - AAUGCCUUCAUCAUCUG 17 3 885 myoC-72 - AACU UUGCUUAUGACAC 17 3 464 myoC-73 - GCUUAUGACACAGGCAC 17 3 451 myoC-562 - GAUUGACUACAACCCCC 17 3 886 myoC-75 - AGAAGAAGCUCUUUGCC 17 3 465 myoC-76 - GAAGAAGCUCUUUGCCU 17 3 452 myoC-77 - CUGGGACAACUUGAACA 17 3 466 myoC-566 - AAGCCUCCAAGCUGUAC 17 3 887 myoC-567 - CCA AG C UGUACAGGCAA 17 3 888 myoC-568 - GUACAGGCAAUGGCAGA 17 3 889 myoC-569 - GGCAGAAGGAGAUGCUC 17 3 890 myoC-570 - GCAGAAGGAGAUGCUCA 17 3 891 myoC-571 - GAGAUGCUCAGGGCUCC 17 3 892 myoC-572 - AGAUGCUCAGGGCUCCU 17 3 893 myoC-573 - GAUGCUCAGGGCUCCUG 17 3 894 myoC-574 - AUGCUCAGGGCUCCUGG 17 3 895 myoC-575 - UGCUCAGGGCUCCUGGG 17 3 896 myoC-576 - GGGCUCCUGGGGGGAGC 17 3 897 myoC-577 - UGGGGGGAGCAGGCUGA 17 3 898 myoC-578 - GGGGGGAGCAGGCUGAA 17 3 899 myoC-579 - GGGAGAGCCAGCCAGCC 17 3 900 myoC-580 - GGAGAGCCAGCCAGCCA 17 3 901 myoC-581 - CC AG CC AG CC AG G G CCC 17 3 902 myoC-582 + CCUGGGCCCUGGCUGGC 17 3 903 myoC-583 + UUCAGCCUGCUCCCCCC 17 3 904 myoC-584 + CCAUUGCCUGUACAGCU 17 3 905 myoC-585 + UUGCCUGUACAGCUUGG 17 3 906 myoC-78 + GGAGGCUUUUCACAUCU 17 3 445 myoC-79 + CAUG UUCAAGUUG UCCC 17 3 467 myoC-80 + CAAAGAGCUUCUUCUCC 17 3 468 myoC-81 + AAAGAGCUUCUUCUCCA 17 3 469 myoC-82 + AAGAGCUUCUUCUCCAG 17 3 470 myoC-83 + AGAGCU UCUUCUCCAGG 17 3 471 myoC-84 + UGCUGCUGUACUUAUAG 17 3 472 myoC-85 + UUAUAGCGGUUCUUGAA 17 3 473 myoC-86 + UAUAGCGGU UCUUGAAU 17 3 474 myoC-87 + GCGGUUCUUGAAUGGGA 17 3 446 myoC-88 + UCU UGAAUGGGAUGGUC 17 3 475 myoC-89 + CU UGAAUGGGAUGGUCA 17 3 476 myoC-90 + GUCAUAAGCAAAG UUGA 17 3 447 myoC-599 + GACGGUAGCAUCUGCUG 17 3 907 myoC-600 + UGAGGUGUAGCUGCUGA 17 3 908 myoC-601 + GCUGCUGACGGUGUACA 17 3 909 myoC-602 + GGUGCCACAGAUGAUGA 17 3 910 myoC-603 + ACAGAUGAUGAAGGCAU 17 3 911 myoC-604 + UGGCGACUGACUGCUUA 17 3 912 myoC-605 + ACGGAUGUU UGUCUCCC 17 3 913 myoC-606 + UCGAGUUCCAGAUUCUC 17 3 914 myoC-607 + CGAGUUCCAGAUUCUCU 17 3 915 myoC-608 + AU UCUCUGGGUUCAGU U 17 3 916 myoC-609 + CUGGGUUCAGUU UGGAG 17 3 917 myoC-610 + CAGU UUGGAGAGGACAA 17 3 918 myoC-611 + GAGG ACAAUGGCACCU U 17 3 919 myoC-44 + GGCACCUU UGGCCUCAU 17 3 404 myoC-45 + UGCUGUAAAUGACCCAG 17 3 434 myoC-46 + UAGCCACCCCAAGAAUA 17 3 395 myoC-47 + AGCCACCCCAAGAAUAC 17 3 435 myoC-616 + AAUACGGGAACUGUCCG 17 3 920 myoC-49 + CCGUGGUAGCCAGCUCC 17 3 436 myoC-50 + CGUGGUAGCCAGCUCCA 17 3 397 myoC-51 + CUCAGCCUUCACUGUCU 17 3 437 myoC-52 + AUAUCU UAUGACAGUUC 17 3 438 myoC-621 + UUCUGGACUCAGCGCCC 17 3 921 myoC-622 + CAGCGCCCUGGAAAUAG 17 3 922 myoC-623 + GCACCCGUGCUU UCCAG 17 3 923 myoC-624 + GUGCUUUCCAGUGGCCU 17 3 924 myoC-625 + AGUAUGUGAACCUUAGA 17 3 925 myoC-626 + GUAUG UGAACCUUAGAA 17 3 926 myoC-627 + GGUAGCCCUGCAUAAAC 17 3 927 myoC-628 + GCAUAAACUGGCUGAUG 17 3 928 myoC-629 + GGUCAUACU C A A A A ACC 17 3 929 myoC-630 + CAUACUCAAAAACCUGG 17 3 930 myoC-631 + UGUGUCGAUUCUCCACG 17 3 931 myoC-632 + UUCUCCACGUGGUCUCC 17 3 932 myoC-633 + UCUCCACGUGGUCUCCU 17 3 933 myoC-634 + CGUGGUCUCCUGGGUGU 17 3 934 myoC-635 + GUGGUCUCCUGGGUGUA 17 3 935 myoC-636 + UGGUCUCCUGGGUGUAG 17 3 936 myoC-637 + CUCCUGGGUGUAGGGG U 17 3 937 myoC-638 + CUGGGUGUAGGGGUAGG 17 3 938 myoC-639 + UGGGUGUAGGGGUAGGU 17 3 939 myoC-640 + GUAGGGGUAGGUGGGCU 17 3 940 myoC-641 + UAGGGGUAGGUGGGCU U 17 3 941 myoC-642 + AGGGGUAGGUGGGCU UG 17 3 942 myoC-643 + GCUGUUCUCAGCGUGAG 17 3 943 myoC-644 + ACUAGUUCUCCACAUCC 17 3 944 myoC-645 - GUU UUCAUUAAUCCAGA 17 3 945 myoC-646 - AUCCAGAAGGAUGAACA 17 3 946 myoC-647 - UCACCAUCUAACUAUUC 17 3 947 myoC-648 - UCAGGAAU UGUAGUCUG 17 3 948 myoC-649 - CAGGAAUUGUAGUCUGA 17 3 949 myoC-650 - UCU UCUGUCAGCAUUUA 17 3 950 myoC-651 - CU UCUGUCAGCAU UUAU 17 3 951 myoC-652 - CAAGU UUUCUUGUGAUU 17 3 952 myoC-653 - AAGU UUUCU UGUGAUU U 17 3 953 myoC-654 - AGUUU UCUUGUGAUUUG 17 3 954 myoC-655 - UUGGGGCAAAAGCUGUA 17 3 955 myoC-656 - UGCUCU UGCAUGUUACA 17 3 956 myoC-657 - A A A AG CAUAACUUCUAA 17 3 957 myoC-658 - AAGCAGAAUAGCUCCUC 17 3 958 myoC-659 - GAUGCAUUUACUACAGU 17 3 959 myoC-660 - UUCAGAUAGAAUACAGU 17 3 960 myoC-661 - UCAGAUAGAAUACAGUU 17 3 961 myoC-662 + UUUAUU UCACAAUGUAA 17 3 962 myoC-663 + UUAUUUCACAAUGUAAA 17 3 963 myoC-664 + UUACUUAUAUUCGAUGC 17 3 964 myoC-665 + UAUUCGAUGCUGGCCAG 17 3 965 myoC-666 + AGUUAUGCUUUU UAUUG 17 3 966 myoC-667 + CU UUUUAUUGUGGCUUG 17 3 967 myoC-668 + GUAACAUGCAAGAGCAA 17 3 968 myoC-669 + CAAGAGCAAUGGUUUUC 17 3 969 myoC-670 + AUGCUGACAGAAGAUAA 17 3 970 myoC-671 + AU UCCUGAAUAGUUAGA 17 3 971 myoC-672 + GACCAUGUUCAUCCUUC 17 3 972 myoC-673 + CUGGAUUAAUGAAAACU 17 3 973 myoC-674 + AAGCAGUCAAAGCUGCC 17 3 974 myoC-675 + AG C AG U C A A AG C U G CC U 17 3 975 Table 4D provides exemplary targeting domains for knocking out the MYOC gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with a S. aureus Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using S. aureus Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 4D
Figure imgf000152_0001
myoC-1619 - CCAGGCCCCAGGAGACCCAG 20 1895 myoC-186 - CAGGCCCCAGGAGACCCAGG 20 572 myoC-1621 - AGGAGACCCAGGAGGGGCUG 20 1896 myoC-1622 - GAGACCCAGGAGGGGCUGCA 20 1897 myoC-188 - AGACCCAGGAGGGGCUGCAG 20 574 myoC-99 - GACCCAGGAGGGGCUGCAGA 20 504 myoC-1625 - AGGAGGGGCUGCAGAGGGAG 20 1898 myoC-1626 - UGCAGAGGGAGCUGGGCACC 20 1899 myoC-1627 - AGGGAGCUGGGCACCCUGAG 20 1900 myoC-102 - GGGAGCUGGGCACCCUGAGG 20 507 myoC-103 - GGAGCUGGGCACCCUGAGGC 20 508 myoC-1630 - CUGGGCACCCUGAGGCGGGA 20 1901 myoC-190 - UGGGCACCCUGAGGCGGGAG 20 576 myoC-1632 - UGAGGCGGGAGCGGGACCAG 20 1902 myoC-105 - GAGGCGGGAGCGGGACCAGC 20 510 myoC-1634 - GACCAGCUGGAAACCCAAAC 20 1903 myoC-1635 - CCAGCUGGAAACCCAAACCA 20 1904 myoC-1636 - UGGAAACCCAAACCAGAGAG 20 1905 myoC-106 - G G A A ACCC A A ACC AG AG AG U 20 479 myoC-1638 - ACUGCCUACAGCAACCUCCU 20 1906 myoC-1639 - UCCUCCGAGACAAGUCAGU U 20 1907 myoC-191 - CCUCCGAGACAAGUCAGUUC 20 577 myoC-1641 - UCCGAGACAAGUCAGU UCUG 20 1908 myoC-192 - CCGAGACAAGUCAGUUCUGG 20 578 myoC-1643 - AGACAAGUCAGUUCUGGAGG 20 1909 myoC-1644 - ACAAGUCAGUUCUGGAGGAA 20 1910 myoC-1645 - AGUCAGUUCUGGAGGAAGAG 20 1911 myoC-1646 - AGAGAAGAAGCGACUAAGGC 20 1912 myoC-1647 - GAAGCGACUAAGGCAAGAAA 20 1913 myoC-1648 - AGCGACUAAGGCAAGAAAAU 20 1914 myoC-1649 - CAAGAAAAUGAGAAUCUGGC 20 1915 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 581 myoC-1651 - AUGAGAAUCUGGCCAGGAGG 20 1916 myoC-197 - UGAGAAUCUGGCCAGGAGGU 20 583 myoC-1653 - GGAGGUUGGAAAGCAGCAGC 20 1917 myoC-107 - GAGGUUGGAAAGCAGCAGCC 20 511 myoC-1655 - GCAGCCAGGAGGUAGCAAGG 20 1918 myoC-1656 - AGCCAGGAGGUAGCAAGGCU 20 1919 myoC-1657 - CAGGAGGUAGCAAGGCUGAG 20 1920 myoC-198 - AGGAGGUAGCAAGGCUGAGA 20 584 myoC-1659 - AGGGGCCAGUGUCCCCAGAC 20 1921 myoC-1660 - CCCCAGACCCGAGACACUGC 20 1922 myoC-1661 - CGGGCUGUGCCACCAGGCUC 20 1923 myoC-1662 - GGCUGUGCCACCAGGCUCCA 20 1924 myoC-1663 + AACCUCAUUGCAGAGGCUUG 20 1925 myoC-1664 + UGCACAGAAGAACCUCAUUG 20 1926 myoC-1665 + AGCUGCAGCAACGUGCACAG 20 1927 myoC-1666 + CAAAGCUGCAGCAACGUGCA 20 1928 myoC-1667 + AGGCAGGCCAGAAGCAGCAG 20 1929 myoC-1668 + ACAUCCCACACCAGGCAGGC 20 1930 myoC-1669 + UGGUCAUUGGCCUUCCUGAG 20 1931 myoC-1670 + CACUCUGGUCAUUGGCCUUC 20 1932 myoC-1671 + AUUCAUUGGGACUGGCCACA 20 1933 myoC-231 + CUCUGGGCAGCUGGAU UCAU 20 617 myoC-1673 + GCUCUGGGCAGCUGGAUUCA 20 1934 myoC-1674 + CCUGGCUCUGCUCUGGGCAG 20 1935 myoC-1675 + UGACAUGGCCUGGCUCUGCU 20 1936 myoC-1676 + CUGCUGUCUCUCUGUAAGUU 20 1937 myoC-1677 + GUGGCCUCCAGGUCUAAGCG 20 1938 myoC-1678 + AGGCUCUCCAGGGAGCUGAG 20 1939 myoC-1679 + GGAGGAGGCUCUCCAGGGAG 20 1940 myoC-223 + UUGGUGGAGGAGGCUCUCCA 20 609 myoC-222 + AUUGGUGGAGGAGGCUCUCC 20 608 myoC-1682 + AAUUGGUGGAGGAGGCUCUC 20 1941 myoC-121 + GGUCCAAGGUCAAUUGGUGG 20 520 myoC-1684 + UGGUCCAAGGUCAAU UGGUG 20 1942 myoC-220 + CCUGGUCCAAGGUCAAUUGG 20 606 myoC-1686 + GCCUGGUCCAAGGUCAAUUG 20 1943 myoC-119 + GCAGCCCCUCCUGGGUCUCC 20 518 myoC-1688 + UGCAGCCCCUCCUGGGUCUC 20 1944 myoC-1689 + AGCUCCCUCUGCAGCCCCUC 20 1945 myoC-1690 + AGCUGGUCCCGCUCCCGCCU 20 1946 myoC-1691 + GCAGUCUCCAACUCUCUGGU 20 1947 myoC-209 + CCAGAACUGACUUGUCUCGG 20 595 myoC-1693 + UCCAGAACUGACUUGUCUCG 20 1948 myoC-208 + CCUCCAGAACUGACUUG UCU 20 594 myoC-1695 + UCCUCCAGAACUGACUUGUC 20 1949 myoC-1696 + AGUCGCUUCUUCUCUUCCUC 20 1950 myoC-204 + CCGAGCAGUGUCUCGGG UCU 20 590 myoC-203 + CCCGAGCAGUGUCUCGGGUC 20 589 myoC-1699 + GCCCGAGCAGUGUCUCGGGU 20 1951 myoC-1700 + GGCACAGCCCGAGCAGUGUC 20 1952 myoC-1701 + CUGGAGCCUGGUGGCACAGC 20 1953 myoC-1702 - CUCACCAAGCCUCUGCA 17 1954 myoC-1703 - UGCACGUUGCUGCAGCU 17 1955 myoC-1704 - UUGCUGCAGCUUUGGGC 17 1956 myoC-1705 - CUUCUGGCCUGCCUGGU 17 1957 myoC-244 - UUCUGGCCUGCCUGGUG 17 630 myoC-1707 - CCUGCCUGGUGUGGGAU 17 1958 myoC-246 - CUGCCUGGUGUGGGAUG 17 632 myoC-247 - UGCCUGGUGUGGGAUGU 17 633 myoC-1710 - GUGUGGGAUGUGGGGGC 17 1959 myoC-1711 - GCCAGGACAGCUCAGCU 17 1960 myoC-250 - CCAGGACAGCUCAGCUC 17 636 myoC-1713 - U C AG G A AG G CC A AU G AC 17 1961 myoC-1714 - C AG U G U G G CC AG U CCC A 17 1962 myoC-1715 - CAAUGAAUCCAGCUGCC 17 1963 myoC-1716 - AAUCCAGCUGCCCAGAG 17 1964 myoC-1717 - CAGUCAUCCAUAACUUA 17 1965 myoC-1718 - GUCAUCCAUAACUUACA 17 1966 myoC-1719 - GCACCCAACGCU U AG AC 17 1967 myoC-254 - CACCCAACGCU UAGACC 17 640 myoC-1721 - AAGCUCGACUCAGCUCC 17 1968 myoC-256 - AGCUCGACUCAGCUCCC 17 642 myoC-1723 - CUCGACUCAGCUCCCUG 17 1969 myoC-1724 - UCCUCCACCAAUUGACC 17 1970 myoC-1725 - ACCAGGCUGCCAGGCCC 17 1971 myoC-260 - CCAG G CU G CCAG G CCCC 17 646 myoC-1727 - CCAGGCCCCAGGAGACC 17 1972 myoC-261 - CAGGCCCCAGGAGACCC 17 647 myoC-1729 - GGCCCCAGGAGACCCAG 17 1973 myoC-133 - GCCCCAGGAGACCCAGG 17 528 myoC-1731 - AGACCCAGGAGGGGCUG 17 1974 myoC-1732 - ACCCAGGAGGGGCUGCA 17 1975 myoC-264 - CCCAGGAGGGGCUGCAG 17 650 myoC-265 - CCAGGAGGGGCUGCAGA 17 651 myoC-1735 - AGGGGCUGCAGAGGGAG 17 1976 myoC-1736 - AGAGGGAGCUGGGCACC 17 1977 myoC-1737 - GAGCUGGGCACCCUGAG 17 1978 myoC-266 - AGCUGGGCACCCUGAGG 17 652 myoC-137 - GCUGGGCACCCUGAGGC 17 532 myoC-1740 - GGCACCCUGAGGCGGGA 17 1979 myoC-138 - GCACCCUGAGGCGGGAG 17 533 myoC-1742 - GGCGGGAGCGGGACCAG 17 1980 myoC-139 - GCGGGAGCGGGACCAGC 17 534 myoC-1744 - CAGCUGGAAACCCAAAC 17 1981 myoC-1745 - GCUGGAAACCCAAACCA 17 1982 myoC-1746 - AAACCCAAACCAGAGAG 17 1983 myoC-268 - AACCCAAACCAG AG AG U 17 654 myoC-1748 - GCCUACAGCAACCUCCU 17 1984 myoC-1749 - UCCG AG ACAAG U CAG U U 17 1985 myoC-269 - CCG AG ACAAG UCAG U U C 17 655 myoC-1751 - GAGACAAGUCAGU UCUG 17 1986 myoC-270 - AGACAAGUCAGUUCUGG 17 656 myoC-1753 - CAAGUCAGU UCUGGAGG 17 1987 myoC-1754 - AGUCAGUUCUGGAGGAA 17 1988 myoC-1755 - CAGU UCUGGAGGAAGAG 17 1989 myoC-1756 - GAAGAAGCGACUAAGGC 17 1990 myoC-1757 - G CG AC U A AG G C A AG AAA 17 1991 myoC-1758 - GACUAAGGCAAGAAAAU 17 1992 myoC-1759 - GAAAAUGAGAAUCUGGC 17 1993 myoC-272 - AAAAUGAGAAUCUGGCC 17 658 myoC-1761 - AGAAUCUGGCCAGGAGG 17 1994 myoC-141 - GAAUCUGGCCAGGAGGU 17 536 myoC-1763 - GGU UGGAAAGCAGCAGC 17 1995 myoC-142 - G U U G G A AAG CAG CAG CC 17 537 myoC-1765 - GCCAGGAGGUAGCAAGG 17 1996 myoC-1766 - CAGGAGGUAGCAAGGCU 17 1997 myoC-1767 - GAGGUAGCAAGGCUGAG 17 1998 myoC-274 - AGGUAGCAAGGCUGAGA 17 660 myoC-1769 - GGCCAG U G U CCCCAG AC 17 1999 myoC-1770 - CAGACCCGAGACACUGC 17 2000 myoC-1771 - GCUGUGCCACCAGGCUC 17 2001 myoC-1772 - UGUGCCACCAGGCUCCA 17 2002 myoC-1773 + CUCAUUGCAGAGGCU UG 17 2003 myoC-1774 + ACAGAAGAACCUCAUUG 17 2004 myoC-1775 + U G CAG CAACG U G CACAG 17 2005 myoC-1776 + AGCUGCAGCAACGUGCA 17 2006 myoC-1777 + C AG G CC AG A AG CAG CAG 17 2007 myoC-1778 + U CCCACACCAG G CAG G C 17 2008 myoC-1779 + UCAUUGGCCUUCCUGAG 17 2009 myoC-1780 + UCUGGUCAU UGGCCUUC 17 2010 myoC-1781 + CAU UGGG ACUGGCCACA 17 2011 myoC-302 + UGGGCAGCUGGAU UCAU 17 688 myoC-1783 + CUGGGCAGCUGGAU UCA 17 2012 myoC-1784 + GGCUCUGCUCUGGGCAG 17 2013 myoC-1785 + CAUGGCCUGGCUCUGCU 17 2014 myoC-1786 + CUGUCUCUCUGUAAGUU 17 2015 myoC-1787 + GCCUCCAGGUCUAAGCG 17 2016 myoC-1788 + CUCUCCAGGGAGCUGAG 17 2017 myoC-1789 + GGAGGCUCUCCAGGGAG 17 2018 myoC-159 + GUGGAGGAGGCUCUCCA 17 549 myoC-158 + GGUGGAGGAGGCUCUCC 17 548 myoC-1792 + UGGUGGAGGAGGCUCUC 17 2019 myoC-295 + CCAAGGUCAAUUGGUGG 17 681 myoC-1794 + UCCAAGGUCAAUUGGUG 17 2020 myoC-157 + GGUCCAAGGUCAAUUGG 17 493 myoC-1796 + UGGUCCAAGGUCAAU UG 17 2021 myoC-156 + GCCCCUCCUGGGUCUCC 17 547 myoC-1798 + AGCCCCUCCUGGGUCUC 17 2022 myoC-1799 + UCCCUCUGCAGCCCCUC 17 2023 myoC-1800 + UGGUCCCGCUCCCGCCU 17 2024 myoC-1801 + GUCUCCAACUCUCUGGU 17 2025 myoC-152 + GAACUGACU UGUCUCGG 17 492 myoC-1803 + AGAACUGACUUGUCUCG 17 2026
myoC-281 + CCAGAACUGACUUGUCU 17 667
myoC-1805 + UCCAGAACUGACUUGUC 17 2027
myoC-1806 + CGCUUCU UCUCUUCCUC 17 2028
myoC-278 + AGCAGUGUCUCGGGUCU 17 664
myoC-149 + GAGCAGUGUCUCGGGUC 17 491
myoC-1809 + CGAGCAGUGUCUCGGG U 17 2029
myoC-1810 + ACAGCCCGAGCAGUGUC 17 2030
myoC-1811 + GAGCCUGGUGGCACAGC 17 2031
Table 4E provides exemplary targeting domains for knocking out the MYOC gene. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 molecule that gives double stranded cleavage. Any of the targeting domains in the table can be used with an N. meningitidis Cas9 single-stranded break nucleases (nickases). In an embodiment, dual targeting is used to create two nicks on opposite DNA strands by using N. meningitidis Cas9 nickases with two targeting domains that are complementary to opposite DNA strands, e.g., a gRNA comprising any minus strand targeting domain may be paired any gRNA comprising a plus strand targeting domain provided that the two gRNAs are oriented on the DNA such that
PAMs face outward and the distance between the 5' ends of the gRNAs is 0-50bp.
Table 4E
Figure imgf000157_0001
Table 5A provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the MYOC gene selected according to first tier parameters, and are selected based on the presence of a 5' G, location in the promoter region and
orthogonality in the human genome. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the promoter region to block transcription resulting in the repression of the MYOC gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a
transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 5A
Figure imgf000158_0001
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor 828 + GAGGAAACCUCUGCCGG 17 binding sites 983
1st 500bp of DNAsel HS region, overlapping myoC- transcription factor 812 + GAUAACAAAACAACCAG 17 binding sites 984
1st 500bp of DNAsel HS region, overlapping myoC- transcription factor 772 GCCUCCAUCGUGCCCGG 17 binding sites 985
1st 500bp of DNAsel HS region, overlapping myoC- transcription factor 789 + GCCUCCGGGCACGAUGG 17 binding sites 986
1st 500bp of DNAsel HS region, overlapping myoC- transcription factor 806 + G U CACCU CCACG AAGG U 17 binding sites 987 within 500bp
myoC- upstream of
848 GAAUCUUGCUGGCAGCGUGA 20 transcription start site 988 within 500bp
myoC- upstream of
839 GAGAUAUAGGAACUAUUAUU 20 transcription start site 989 within 500bp
myoC- upstream of
857 GCCAGCAAGGCCACCCAUCC 20 transcription start site 990 within 500bp
myoC- upstream of
838 GGAGAUAUAGGAACUAUUAU 20 transcription start site 991 within 500bp
myoC- upstream of
871 + GGGGAGCCAGCCCUUCAUGG 20 transcription start site 992 within 500bp
myoC- upstream of
844 GGGGUAUGGGUGCAUAAAUU 20 transcription start site 993 within 500bp
myoC- upstream of
837 GUAAAACCAGGUGGAGAUAU 20 transcription start site 994 within 500bp
myoC- upstream of
861 + GUGCUGAGAGGUGCCUGGAU 20 transcription start site 995 within 500bp
myoC- upstream of
907 GAACUAUUAUUGGGGUA 17 transcription start site 996 within 500bp
myoC- upstream of
931 + GAGAGGUUUAUAUAUAC 17 transcription start site 997 within 500bp myoC- upstream of
919 GUAUAUAUAAACCUCUC 17 transcription start site 998 within 500bp
myoC- upstream of
910 GUAUGGGUGCAUAAAUU 17 transcription start site 999 within 500bp
myoC- upstream of 100 959 + GUCCUUUAAGACGUAGC 17 transcription start site 0 within 500bp
myoC- upstream of 100 896 GUCUUAAAGGACUUGUU 17 transcription start site 1 within 500bp
myoC- upstream of 100 955 + GUGUGCUGAUUUCAACA 17 transcription start site 2
Table 5B provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of MYOC gene selected according to the second tier parameters, and are selected based on the presence of a 5' G, location in the promoter region. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the promoter region to block transcription resulting in the repression of the MYOC gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 5B
Figure imgf000160_0001
1st 500bp of DNAsel
HS region,
overlapping
myoC- transcription factor
679 GAGGUUUCCUCUCCAGCUGG 20 binding sites 1005
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor
676 GCAGAGGUUUCCUCUCCAGC 20 binding sites 1006
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 741 + GCAGGUUGCUCAGGACACCC 20 binding sites 1007
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 689 GCCAGACACCAGAGACAAAA 20 binding sites 1008
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 742 + GCUCAGGACACCCAGGACCC 20 binding sites 1009
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 748 + GCUGGAGAGGAAACCUCUGC 20 binding sites 1010
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 701 + GCUGUGACUGAUGGAGGAGG 20 binding sites 1011
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 746 + GCUUGCAGGGCUCCCCCAGC 20 binding sites 1012
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 751 + GGAGAGGAAACCUCUGCCGG 20 binding sites 1013
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 704 + GGAGGAGGCUUGGAAGACUC 20 binding sites 1014 1st 500bp of DNAsel
HS region,
overlapping
myoC- transcription factor
718 + GGAGGCAGCAGGGGGCGCUA 20 binding sites 1015
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor
716 + GGCACGAUGGAGGCAGCAGG 20 binding sites 1016
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 719 + GGCAGCAGGGGGCGCUAGGG 20 binding sites 1017
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 715 + GGGCACGAUGGAGGCAGCAG 20 binding sites 1018
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 681 GGGGAGCCCUGCAAGCACCC 20 binding sites 1019
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 680 GGGGGAGCCCUGCAAGCACC 20 binding sites 1020
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 692 GUGGAGGUGACAGUUUCUCA 20 binding sites 1021
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 764 GACUCGUUCAUUCAUCC 17 binding sites 1022
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 826 + GAGAGGAAACCUCUGCC 17 binding sites 1023
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 757 GAGCCCUGCAAGCACCC 17 binding sites 1024 1st 500bp of DNAsel
HS region,
overlapping
myoC- transcription factor
768 GAGGUGACAGUUUCUCA 17 binding sites 1025
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor
752 GAGGUUUCCUCUCCAGC 17 binding sites 1026
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 759 GCAAGCACCCGGGGUCC 17 binding sites 1027
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 791 + GCACGAUGGAGGCAGCA 17 binding sites 1028
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 808 + GCUCACCAUUUUGUCUC 17 binding sites 1029
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 771 GCUGCCUCCAUCGUGCC 17 binding sites 1030
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 777 + GCUGUGACUGAUGGAGG 17 binding sites 1031
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 785 + GGAAGACUCGGGCUUGG 17 binding sites 1032
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 821 + GGACCCCGGGUGCUUGC 17 binding sites 1033
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 825 + GGAGAGGAAACCUCUGC 17 binding sites 1034 1st 500bp of DNAsel
HS region,
overlapping
myoC- transcription factor
756 GGAGCCCUGCAAGCACC 17 binding sites 1035
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 781 + GGAGGCUUGGAAGACUC 17 binding sites 1036
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 799 + GGAGGUGGCCUUGUUAA 17 binding sites 1037
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 790 + GGCACGAUGGAGGCAGC 17 binding sites 1038
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 795 + GGCAGCAGGGGGCGCUA 17 binding sites 1039
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 824 + GGCUCCCCCAGCUGGAG 17 binding sites 1040
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 798 + GGGAGGUGGCCUUGUUA 17 binding sites 1041
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 817 + GGGCUGGCAGGUUGCUC 17 binding sites 1042
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 788 + GGGGCCUCCGGGCACGA 17 binding sites 1043
1st 500bp of DNAsel HS region,
overlapping
myoC- transcription factor 818 + GGUUGCUCAGGACACCC 17 binding sites 1044 1st 500bp of DNAsel
HS region,
overlapping
myoC- transcription factor
754 - GGUUUCCUCUCCAGCUG 17 binding sites 1045
1st 500bp of DNAsel
HS region,
overlapping
myoC- transcription factor
778 + GUGACUGAUGGAGGAGG 17 binding sites 1046
1st 500bp of DNAsel
HS region,
overlapping
myoC- transcription factor
755 - GUUUCCUCUCCAGCUGG 17 binding sites 1047 within 500bp
upstream of
myoC- transcription start
858 + GAAAGCUCUGCUGUGCUGAG 20 site 1048 within 500bp
upstream of
myoC- transcription start
863 + GCCUGGAUGGGUGGCCUUGC 20 site 1049 within 500bp
upstream of
myoC- transcription start
881 + GCUGGGUGGGGCUGUGCACA 20 site 1050 within 500bp
upstream of
myoC- transcription start
880 + GGCUGGGUGGGGCUGUGCAC 20 site 1051 within 500bp
upstream of
myoC- transcription start
884 + GGGUGGGGCUGUGCACAGGG 20 site 1052 within 500bp
upstream of
myoC- transcription start
877 + GGUGGCCACGUGAGGCUGGG 20 site 1053 within 500bp
upstream of
myoC- transcription start
878 + GUGGCCACGUGAGGCUGGGU 20 site 1054 within 500bp
upstream of
myoC- transcription start
835 - GUGUGUGUGUGUGUAAAACC 20 site 1055 within 500bp
upstream of
myoC- transcription start
937 + GAGCCAGCCCUUCAUGG 17 site 1056 within 500bp
upstream of
myoC- transcription start
933 + GAGGUUUAUAUAUACUG 17 site 1057 within 500bp
upstream of
myoC- transcription start
904 GAUAUAGGAACUAUUAU 17 site 1058 within 500bp
upstream of
myoC- transcription start
944 + GCCACGUGAGGCUGGGU 17 site 1059 within 500bp
upstream of
myoC- transcription start
926 + GCUGAGAGGUGCCUGGA 17 site 1060 within 500bp
upstream of
myoC- transcription start
936 + GGAGCCAGCCCUUCAUG 17 site 1061 within 500bp
upstream of
myoC- transcription start
958 + GGCACUAUGCUAGGAAC 17 site 1062 within 500bp
upstream of
myoC- transcription start
943 + GGCCACGUGAGGCUGGG 17 site 1063 within 500bp
upstream of
myoC- transcription start
935 + GGGAGCCAGCCCUUCAU 17 site 1064 within 500bp
upstream of
myoC- transcription start
934 + GGGGAGCCAGCCCUUCA 17 site 1065 within 500bp
upstream of
myoC- transcription start
947 + GGGUGGGGCUGUGCACA 17 site 1066 within 500bp
upstream of
myoC- transcription start
909 GGUAUGGGUGCAUAAAU 17 site 1067 within 500bp
upstream of
myoC- transcription start
942 + GGUGGCCACGUGAGGCU 17 site 1068 within 500bp
upstream of
myoC- transcription start
948 + GGUGGGGCUGUGCACAG 17 site 1069 within 500bp
upstream of
myoC- transcription start
953 + G UACACACACU U ACACC 17 site 1070 within 500bp
upstream of
myoC- transcription start
957 + GUGCCAGGCACUAUGCU 17 site 1071 within 500bp
upstream of
myoC- transcription start
949 + GUGGGGCUGUGCACAGG 17 site 1072 within 500bp
upstream of
myoC- transcription start
902 GUGUGUGUAAAACCAGG 17 site 1073 within 500bp
upstream of
myoC- transcription start
897 GUUCCUAGCAUAGUGCC 17 site 1074 within 500bp
upstream of
myoC- transcription start
952 + GUUCCUAUAUCUCCACC 17 site 1075
Table 5C provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of MYOC gene selected according to the third tier parameters, and are selected based on the location in the promoter region. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the promoter region to block transcription resulting in the repression of the MYOC gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 5C
Figure imgf000167_0001
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
738 + A A AC A ACC AG UGGCACGGGC 20 binding sites 1076
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
737 + A AC AAA ACAACC AG U G G CAC 20 binding sites 1077
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
739 + AACCAGUGGCACGGGCUGGC 20 binding sites 1078
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
685 AACCUGCCAGCCCGUGCCAC 20 binding sites 1079
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
734 + ACACAGAAAUAGAAAGCAAC 20 binding sites 1080
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
732 + ACCAUUUUGUCUCUGG UGUC 20 binding sites 1081
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
710 + ACUCGGGCUUGGGGGCCUCC 20 binding sites 1082
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
729 + ACUGUCACCUCCACGAAGGU 20 binding sites 1083
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
728 + AGAAACUGUCACCUCCACGA 20 binding sites 1084
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
678 AGAGGU UUCCUCUCCAGCUG 20 binding sites 1085
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
727 + AGCACUGGGUUUAAGU UGGC 20 binding sites 1086
1st 500bp of DNAsel myoC- HS region, overlapping 720 + AGCAGGGGGCGCUAGGGAGG 20 transcription factor 1087 binding sites
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
700 + AGCGCUGUGACUGAUGGAGG 20 binding sites 1088
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
698 + AGCUGCAGCGCUGUGACUGA 20 binding sites 1089
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
703 + AGGAGGAGGCUUGGAAGACU 20 binding sites 1090
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
705 + AGGCUUGGAAGACUCGGGCU 20 binding sites 1091
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
735 + AG U G A U A AC A A A AC A AC C AG 20 binding sites 1092
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
733 + AUAAAUUGUCAAUGAAUGCC 20 binding sites 1093
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
697 AUCAGUCACAGCGCUGCAGC 20 binding sites 1094
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
725 + AUUUCCUU UCUUUCAGCACU 20 binding sites 1095
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
740 + CACGGGCUGGCAGGUUGCUC 20 binding sites 1096
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
677 CAGAGGU UUCCUCUCCAGCU 20 binding sites 1097
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
745 + CAGGACCCCGGGUGCUUGCA 20 binding sites 1098 1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
747 + CAGGGCUCCCCCAGCUGGAG 20 binding sites 1099
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
690 CAGUCACUGCCCUACCUUCG 20 binding sites 1100
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
744 + CCAGGACCCCGGGUGCUUGC 20 binding sites 1101
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
713 + CCGGGCACGAUGGAGGCAGC 20 binding sites 1102
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
683 CCUGCAAGCACCCGGGGUCC 20 binding sites 1103
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
695 CCUGCUGCCUCCAUCGUGCC 20 binding sites 1104
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
714 + CGGGCACGAUGGAGGCAGCA 20 binding sites 1105
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
721 + CUAGGGAGGUGGCCUUGUUA 20 binding sites 1106
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
743 + CUCAGGACACCCAGGACCCC 20 binding sites 1107
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
684 CUGCAAGCACCCGGGGUCCU 20 binding sites 1108
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
723 + CUGCGCACAAU UCUUCAAGA 20 binding sites 1109
1st 500bp of DNAsel myoC- HS region, overlapping 749 + CUGGAGAGGAAACCUCUGCC 20 transcription factor 1110 binding sites
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
730 + CUGUCACCUCCACGAAGGUA 20 binding sites 1111
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
708 + CUUGGAAGACUCGGGCUUGG 20 binding sites 1112
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
693 UAAACCCAGUGCUGAAAGAA 20 binding sites 1113
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
736 + U A AC A A A AC A ACC AG U G G C A 20 binding sites 1114
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
722 + UAGGGAGGUGGCCUUG UUAA 20 binding sites 1115
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
724 + UAUU UCCU UUCUUUCAGCAC 20 binding sites 1116
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
691 UCACUGCCCUACCUUCGUGG 20 binding sites 1117
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
699 + UGCAGCGCUGUGACUGAUGG 20 binding sites 1118
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
750 + UGGAGAGGAAACCUCUGCCG 20 binding sites 1119
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
717 + UGGAGGCAGCAGGGGGCGCU 20 binding sites 1120
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
688 UGUGACUCGU UCAUUCAUCC 20 binding sites 1121 1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
687 UGUUUUGUUAUCACUCUCUA 20 binding sites 1122
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
711 + UUGGGGGCCUCCGGGCACGA 20 binding sites 1123
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
686 UUGUUU UGU UAUCACUCUCU 20 binding sites 1124
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
726 + UU UCAGCACUGGGU UUAAGU 20 binding sites 1125
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
731 + UU UGCUCACCAU UUUG UCUC 20 binding sites 1126
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
814 + A A A AC A ACC AG U G G C AC 17 binding sites 1127
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
805 + AACUGUCACCUCCACGA 17 binding sites 1128
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
810 + AAU UGUCAAUGAAUGCC 17 binding sites 1129
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
769 ACCCAGUGCUGAAAGAA 17 binding sites 1130
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
793 + ACGAUGGAGGCAGCAGG 17 binding sites 1131
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
804 + ACUGGGUUUAAGUUGGC 17 binding sites 1132
1st 500bp of DNAsel myoC- HS region, overlapping 765 AGACACCAGAGACAAAA 17 transcription factor 1133 binding sites
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
827 + AGAGGAAACCUCUGCCG 17 binding sites 1134
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
796 + AGCAGGGGGCGCUAGGG 17 binding sites 1135
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
758 AGCCCUGCAAGCACCCG 17 binding sites 1136
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
776 + AGCGCUGUGACUGAUGG 17 binding sites 1137
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
820 + AGGACACCCAGGACCCC 17 binding sites 1138
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
780 + AGGAGGCUUGGAAGACU 17 binding sites 1139
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
794 + AGGCAGCAGGGGGCGCU 17 binding sites 1140
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
797 + AGGGGGCGCUAGGGAGG 17 binding sites 1141
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
753 AGGU UUCCUCUCCAGCU 17 binding sites 1142
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
773 AGUCACAGCGCUGCAGC 17 binding sites 1143
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
809 + AUUU UGUCUCUGGUGUC 17 binding sites 1144 1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
813 + C A A A AC A ACC AG U G G C A 17 binding sites 1145
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
815 + CAACCAGUGGCACGGGC 17 binding sites 1146
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
760 CAAGCACCCGGGGUCCU 17 binding sites 1147
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
792 + CACGAUGGAGGCAGCAG 17 binding sites 1148
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
811 + CAGAAAUAGAAAGCAAC 17 binding sites 1149
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
803 + CAGCACUGGGUUUAAGU 17 binding sites 1150
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
819 + CAGGACACCCAGGACCC 17 binding sites 1151
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
816 + CAGUGGCACGGGCUGGC 17 binding sites 1152
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
800 + CGCACAAUUCU UCAAGA 17 binding sites 1153
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
770 CGCAGCAUCCCU U AACA 17 binding sites 1154
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
787 + CGGGCUUGGGGGCCUCC 17 binding sites 1155
1st 500bp of DNAsel myoC- HS region, overlapping 761 CUGCCAGCCCGUGCCAC 17 transcription factor 1156 binding sites
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
767 CUGCCCUACCU UCGUGG 17 binding sites 1157
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
782 + CUUGGAAGACUCGGGCU 17 binding sites 1158
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
807 + U CACCU CCACG AAGG U A 17 binding sites 1159
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
766 UCACUGCCCUACCUUCG 17 binding sites 1160
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
802 + UCCUU UCUUUCAGCACU 17 binding sites 1161
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
786 + UCGGGCUUGGGGGCCUC 17 binding sites 1162
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
779 + UGAUGGAGGAGGAGGCU 17 binding sites 1163
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
775 + UGCAGCGCUGUGACUGA 17 binding sites 1164
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
823 + UGCAGGGCUCCCCCAGC 17 binding sites 1165
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
784 + UGGAAGACUCGGGCUUG 17 binding sites 1166
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
774 + UUCACGGGAAGCGAGGC 17 binding sites 1167 1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
801 + UUCCU UUCUU UCAGCAC 17 binding sites 1168
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
783 + UUGGAAGACUCGGGCU U 17 binding sites 1169
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
763 UU UGUUAUCACUCUCUA 17 binding sites 1170
1st 500bp of DNAsel
HS region, overlapping myoC- transcription factor
762 UU UUGU UAUCACUCUCU 17 binding sites 1171 within 500bp upstream myoC- of transcription start
874 + AAGACAGAGGUGGCCACGUG 20 site 1172 within 500bp upstream myoC- of transcription start
894 + AAGUCCUUUAAGACGUAGCA 20 site 1173 within 500bp upstream myoC- of transcription start
834 A AU CAG CAC ACC AG U AG U CC 20 site 1174 within 500bp upstream myoC- of transcription start
850 ACCUCUGUCUUCCCCCAUGA 20 site 1175 within 500bp upstream myoC- of transcription start
846 ACUCCAAACAGACUUCUGGA 20 site 1176 within 500bp upstream myoC- of transcription start
868 + ACUGGGGAGCCAGCCCUUCA 20 site 1177 within 500bp upstream myoC- of transcription start
891 + ACUGUGCCAGGCACUAUGCU 20 site 1178 within 500bp upstream myoC- of transcription start
845 AGAAACUCCAAACAGACUUC 20 site 1179 within 500bp upstream myoC- of transcription start
867 + AGAGAGGU UUAUAUAUACUG 20 site 1180 within 500bp upstream myoC- of transcription start
876 + AGAGGUGGCCACGUGAGGCU 20 site 1181 within 500bp upstream myoC- of transcription start
840 AGAUAUAGGAACUAUUAUUG 20 site 1182 within 500bp upstream myoC- of transcription start
856 AGCUCGGGCAUGAGCCAGCA 20 site 1183 within 500bp upstream myoC- of transcription start
842 AGGAACUAU UAU UGGGGUAU 20 site 1184 within 500bp upstream myoC- of transcription start
886 + AUAGUUCCUAUAUCUCCACC 20 site 1185 within 500bp upstream myoC- of transcription start
854 AUAUAAACCUCUCUGGAGCU 20 site 1186 within 500bp upstream myoC- of transcription start
893 + CAAG U CCU U UAAGACG UAGC 20 site 1187 within 500bp upstream myoC- of transcription start
833 CAAUGAGU UUGCAGAGUGAA 20 site 1188 within 500bp upstream myoC- of transcription start
888 + CACACUUACACCAGGACUAC 20 site 1189 within 500bp upstream myoC- of transcription start
887 + CACGUACACACACUUACACC 20 site 1190 within 500bp upstream myoC- of transcription start
866 + CAGAGAGGU UUAUAUAUACU 20 site 1191 within 500bp upstream myoC- of transcription start
875 + CAGAGGUGGCCACGUGAGGC 20 site 1192 within 500bp upstream myoC- of transcription start
849 CAGCCCCACCCAGCCUCACG 20 site 1193 within 500bp upstream myoC- of transcription start
832 CAUAGUGCCUGGCACAGUGC 20 site 1194 within 500bp upstream myoC- of transcription start
865 + CCAGAGAGGUUUAUAUAUAC 20 site 1195 within 500bp upstream myoC- of transcription start
892 + CCAGGCACUAUGCUAGGAAC 20 site 1196 myoC- within 500bp upstream 853 CCAGUAUAUAUAAACCUCUC 20 of transcription start 1197 site within 500bp upstream myoC- of transcription start
831 CCAGUUCCUAGCAUAGUGCC 20 site 1198 within 500bp upstream myoC- of transcription start
872 + CCCUUCAUGGGGGAAGACAG 20 site 1199 within 500bp upstream myoC- of transcription start
851 CCUCUG UCUUCCCCCAUGAA 20 site 1200 within 500bp upstream myoC- of transcription start
864 + CUCAUGCCCGAGCUCCAGAG 20 site 1201 within 500bp upstream myoC- of transcription start
862 + CUGAGAGGUGCCUGGAUGGG 20 site 1202 within 500bp upstream myoC- of transcription start
859 + CUGCUGUGCUGAGAGGUGCC 20 site 1203 within 500bp upstream myoC- of transcription start
869 + CUGGGGAGCCAGCCCUUCAU 20 site 1204 within 500bp upstream myoC- of transcription start
882 + CUGGGUGGGGCUGUGCACAG 20 site 1205 within 500bp upstream myoC- of transcription start
889 + CUGGUGUGCUGAUUUCAACA 20 site 1206 within 500bp upstream myoC- of transcription start
829 CUGUCCCUGCUACGUCUUAA 20 site 1207 within 500bp upstream myoC- of transcription start
885 + UAACCUUCCAGAAGUCUGUU 20 site 1208 within 500bp upstream myoC- of transcription start
830 UACGUCU UAAAGGACU UGUU 20 site 1209 within 500bp upstream myoC- of transcription start
841 UAGGAACUAUUAUUGGGGUA 20 site 1210 within 500bp upstream myoC- of transcription start
855 UAUAAACCUCUCUGGAGCUC 20 site 1211 within 500bp upstream myoC- of transcription start
879 + UGGCCACGUGAGGCUGGGUG 20 site 1212 within 500bp upstream myoC- of transcription start
870 + UGGGGAGCCAGCCCUUCAUG 20 site 1213 within 500bp upstream myoC- of transcription start
843 UGGGGUAUGGGUGCAUAAAU 20 site 1214 within 500bp upstream myoC- of transcription start
883 + UGGGUGGGGCUGUGCACAGG 20 site 1215 within 500bp upstream myoC- of transcription start
852 UGUCUUCCCCCAUGAAGGGC 20 site 1216 within 500bp upstream myoC- of transcription start
860 + UGUGCUGAGAGGUGCCUGGA 20 site 1217 within 500bp upstream myoC- of transcription start
836 UGUGUGUGUGUAAAACCAGG 20 site 1218 within 500bp upstream myoC- of transcription start
847 UUAU UUUCUAAGAAUCUUGC 20 site 1219 within 500bp upstream myoC- of transcription start
873 + UUCAUGGGGGAAGACAGAGG 20 site 1220 within 500bp upstream myoC- of transcription start
890 + UUGAGAACCUGCACUGUGCC 20 site 1221 within 500bp upstream myoC- of transcription start
903 AAACCAGGUGGAGAUAU 17 site 1222 within 500bp upstream myoC- of transcription start
921 AAACCUCUCUGGAGCUC 17 site 1223 within 500bp upstream myoC- of transcription start
908 AACUAUUAU UGGGGUAU 17 site 1224 within 500bp upstream myoC- of transcription start
911 AACUCCAAACAGACUUC 17 site 1225 within 500bp upstream myoC- of transcription start
940 + ACAGAGGUGGCCACGUG 17 site 1226 within 500bp upstream myoC- of transcription start
954 + ACU U ACACCAGG ACU AC 17 site 1227 myoC- within 500bp upstream 956 + AGAACCUGCACUGUGCC 17 of transcription start 1228 site within 500bp upstream myoC- of transcription start
928 + AGAGGUGCCUGGAUGGG 17 site 1229 within 500bp upstream myoC- of transcription start
932 + AGAGGU UUAUAUAUACU 17 site 1230 within 500bp upstream myoC- of transcription start
923 AG C A AG G CC ACCC A U CC 17 site 1231 within 500bp upstream myoC- of transcription start
924 + AGCUCUGCUGUGCUGAG 17 site 1232 within 500bp upstream myoC- of transcription start
941 + AGGUGGCCACGUGAGGC 17 site 1233 within 500bp upstream myoC- of transcription start
898 AGUGCCUGGCACAGUGC 17 site 1234 within 500bp upstream myoC- of transcription start
905 AUAUAGGAACUAU UAU U 17 site 1235 within 500bp upstream myoC- of transcription start
930 + AUGCCCGAGCUCCAGAG 17 site 1236 within 500bp upstream myoC- of transcription start
939 + AUGGGGGAAGACAGAGG 17 site 1237 within 500bp upstream myoC- of transcription start
900 C AG C AC ACC AG U AG U CC 17 site 1238 within 500bp upstream myoC- of transcription start
912 CCAAACAGACUUCUGGA 17 site 1239 within 500bp upstream myoC- of transcription start
945 + CCACGUGAGGCUGGGUG 17 site 1240 within 500bp upstream myoC- of transcription start
915 CCCCACCCAGCCUCACG 17 site 1241 within 500bp upstream myoC- of transcription start
951 + CCUUCCAGAAGUCUGUU 17 site 1242 within 500bp upstream myoC- of transcription start
927 + CUGAGAGGUGCCUGGAU 17 site 1243 within 500bp upstream myoC- of transcription start
917 CUGUCUUCCCCCAUGAA 17 site 1244 within 500bp upstream myoC- of transcription start
925 + CUGUGCUGAGAGGUGCC 17 site 1245 within 500bp upstream myoC- of transcription start
918 CUUCCCCCAUGAAGGGC 17 site 1246 within 500bp upstream myoC- of transcription start
920 UAAACCUCUCUGGAGCU 17 site 1247 within 500bp upstream myoC- of transcription start
906 UAUAGGAACUAU UAUUG 17 site 1248 within 500bp upstream myoC- of transcription start
895 UCCCUGCUACGUCUUAA 17 site 1249 within 500bp upstream myoC- of transcription start
960 + UCCUU UAAGACGUAGCA 17 site 1250 within 500bp upstream myoC- of transcription start
922 UCGGGCAUGAGCCAGCA 17 site 1251 within 500bp upstream myoC- of transcription start
916 UCUGUCU UCCCCCAUGA 17 site 1252 within 500bp upstream myoC- of transcription start
914 UCU UGCUGGCAGCGUGA 17 site 1253 within 500bp upstream myoC- of transcription start
899 UGAGUUUGCAGAGUGAA 17 site 1254 within 500bp upstream myoC- of transcription start
929 + UGGAUGGGUGGCCUUGC 17 site 1255 within 500bp upstream myoC- of transcription start
950 + UGGGGCUGUGCACAGGG 17 site 1256 within 500bp upstream myoC- of transcription start
946 + UGGGUGGGGCUGUGCAC 17 site 1257 within 500bp upstream myoC- of transcription start
901 UGUGUGUGUGUAAAACC 17 site 1258 myoC- within 500bp upstream 938 + UUCAUGGGGGAAGACAG 17 of transcription start 1259 site within 500bp upstream myoC- of transcription start
913 UU UUCUAAGAAUCU UGC 17 site 1260
Table 5D provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the MYOC gene selected according to the fourth tier parameters, and are selected based on the location in the promoter region that are not described in Tables 5A-C. In an embodiment, the targeting domain is the exact complement of the target domain. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule to cause a steric block at the promoter region to block transcription resulting in the repression of the MYOC gene. Alternatively, any of the targeting domains in the table can be used with a S. pyogenes eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 5D
Figure imgf000182_0001
myoC-980 - U CC AG G AG A A U U CC AG G AG G 20 1280 myoC-981 - CCAGGAGAAUUCCAGGAGGU 20 1281 myoC-982 - CAGGAGAAUUCCAGGAGGUG 20 1282 myoC-983 - UUCCAGGAGGUGGGGACUGC 20 1283 myoC-984 - UCCAGGAGGUGGGGACUGCA 20 1284 myoC-985 - GAGGUGGGGACUGCAGGGAG 20 1285 myoC-986 - AGGUGGGGACUGCAGGGAGU 20 1286 myoC-987 - GGUGGGGACUGCAGGGAGUG 20 1287 myoC-988 - ACUGCAGGGAGUGGGGACGC 20 1288 myoC-989 - CUGCAGGGAGUGGGGACGCU 20 1289 myoC-990 - UGCAGGGAGUGGGGACGCUG 20 1290 myoC-991 - GUGGGGACGCUGGGGCUGAG 20 1291 myoC-992 - UGGGGACGCUGGGGCUGAGC 20 1292 myoC-993 - GGGGCUGAGCGGGUGCUGAA 20 1293 myoC-994 - CUGAGCGGGUGCUGAAAGGC 20 1294 myoC-995 - GCGGGUGCUGAAAGGCAGGA 20 1295 myoC-996 - UGAAAGGCAGGAAGGUGAAA 20 1296 myoC-997 - GAAAGGCAGGAAGGUG A A A A 20 1297 myoC-998 - G C AG G A AG G U G A A A AG G G C A 20 1298 myoC-999 - CAGAUG UUCAGUGUUGU UCA 20 1299 myoC-1000 - AGAUGUUCAGUGUUGU UCAC 20 1300 myoC-1001 - GAUGUUCAGUGUUGUUCACG 20 1301 myoC-1002 - UUCAGUGUUGU UCACGGGGC 20 1302 myoC-1003 - UCAG UGU UGUUCACGGGGCU 20 1303 myoC-1004 - CUU UUUAUCUUUUCUCUGCU 20 1304 myoC-1005 - UUUAUCUU UUCUCUGCUUGG 20 1305 myoC-1006 - AGAAGAAGUCUAUU UCAUGA 20 1306 myoC-1007 - GAAGAAGUCUAUU UCAUGAA 20 1307 myoC-1008 - AAGUCAGCUGUUAAAAU UCC 20 1308 myoC-1009 - AG U C AG CU G U U A A A A U U CC A 20 1309 myoC-1010 - UUAAAAUUCCAGGGUGUGCA 20 1310 myoC-1011 - UAAAAU UCCAGGGUGUGCAU 20 1311 myoC-1012 - GCAUGGGUUUUCCU UCACGA 20 1312 myoC-1013 - UCACGAAGGCCU UUAUUUAA 20 1313 myoC-1014 - CACGAAGGCCUU UAU UUAAU 20 1314 myoC-1015 - CCUUUAUU UAAUGGGAAUAU 20 1315 myoC-1016 - AGGAAGCGAGCUCAUU UCCU 20 1316 myoC-1017 - UUUCCUAGGCCGUUAAUUCA 20 1317 myoC-1018 - UAAUUCACGGAAGAAGUGAC 20 1318 myoC-1019 - GUCUU UUCUUUCAUGUCUUC 20 1319 myoC-1020 - UCUUUUCUUUCAUGUCUUCU 20 1320 myoC-1021 - UGGGCAACUACUCAGCCCUG 20 1321 myoC-1022 - GCAACUACUCAGCCCUGUGG 20 1322 myoC-1023 - ACUCAGCCCUGUGGUGGACU 20 1323 myoC-1024 - UGGACUUGGCUUAUGCAAGA 20 1324 myoC-1025 - UGCAAGACGGUCGAAAACCU 20 1325 myoC-1026 - CGGUCGAAAACCUUGGAAUC 20 1326 myoC-1027 - AACCUUGGAAUCAGGAGACU 20 1327 myoC-1028 - AGGAGACUCGGUUU UCUUUC 20 1328 myoC-1029 - UU UCUUUCUGGUUCUGCCAU 20 1329 myoC-1030 - UU UCUGGUUCUGCCAUUGGU 20 1330 myoC-1031 - AUUGGU UGGCUGUGCGACCG 20 1331 myoC-1032 - UUGGUUGGCUGUGCGACCGU 20 1332 myoC-1033 - GGCAAGUGUCUCUCCUUCCC 20 1333 myoC-1034 - GCAAGUGUCUCUCCUUCCCU 20 1334 myoC-1035 - CU UCCCUGUGAUUCUCUGUG 20 1335 myoC-1036 - UUCCCUGUGAUUCUCUGUGA 20 1336 myoC-1037 - UCCCUGUGAUUCUCUGUGAG 20 1337 myoC-1038 - CCCUGUGAUUCUCUGUGAGG 20 1338 myoC-1039 - CCUGUGAUUCUCUGUGAGGG 20 1339 myoC-1040 - CUGUGAGGGGGGAUGU UGAG 20 1340 myoC-1041 - UGUGAGGGGGGAUGU UGAGA 20 1341 myoC-1042 - GUGAGGGGGGAUGUUGAGAG 20 1342 myoC-1043 - GGGGGGAUGUUGAGAGGGGA 20 1343 myoC-1044 - GGGAUG UUGAGAGGGGAAGG 20 1344 myoC-1045 - AGAGGGGAAGGAGGCAGAGC 20 1345 myoC-1046 - AGCUGGAGCAGCUGAGCCAC 20 1346 myoC-1047 - GCUGGAGCAGCUGAGCCACA 20 1347 myoC-1048 - CUGGAGCAGCUGAGCCACAG 20 1348 myoC-1049 - GAGCAGCUGAGCCACAGGGG 20 1349 myoC-1050 - CAGCUGAGCCACAGGGGAGG 20 1350 myoC-1051 - CUGAGCCACAGGGGAGGUGG 20 1351 myoC-1052 - UG AGCCACAGGGG AGG UGG A 20 1352 myoC-1053 - GAGCCACAGGGGAGGUGGAG 20 1353 myoC-1054 - AGCCACAGGGG AGGUGG AGG 20 1354 myoC-1055 - CAGGGGAGGUGGAGGGGGAC 20 1355 myoC-1056 - GGAGGUGGAGGGGGACAGGA 20 1356 myoC-1057 - GUGGAGGGGGACAGGAAGGC 20 1357 myoC-1058 - ACAGGAAGGCAGGCAGAAGC 20 1358 myoC-1059 - C AG G A AG G C AG G C AG A AG C U 20 1359 myoC-1060 - CACUGAUCACGUCAGACUCC 20 1360 myoC-1061 - ACCGAGAGCCACAAUGCUUC 20 1361 myoC-1062 - CCUUCCCUAAGCAUAGACAA 20 1362 myoC-1063 - AAAAGAAUGCAGAGACUAAC 20 1363 myoC-1064 - AGAAUGCAGAGACUAACUGG 20 1364 myoC-1065 - AACUGG UGGUAGCU UUUGCC 20 1365 myoC-1066 - UU UGCCUGGCAUUCAAAAAC 20 1366 myoC-1067 - UUGCCUGGCAUUCAAAAACU 20 1367 myoC-1068 - AAAAACUGGGCCAGAGCAAG 20 1368 myoC-1069 + CUGGCAUUU UCCACUUGCUC 20 1369 myoC-1070 + UGGCCCAGUU UUUGAAUGCC 20 1370 myoC-1071 + GUUAGUCUCUGCAUUCUUUU 20 1371 myoC-1072 + UCUGCAUUCUU UUUGGUUAU 20 1372 myoC-1073 + AAAUGCCAU UGUCUAUGCUU 20 1373 myoC-1074 + AAUGCCAUUGUCUAUGCUUA 20 1374 myoC-1075 + CCAUUGUCUAUGCU UAGGGA 20 1375 myoC-1076 + AUGCUUAGGGAAGGAAAAUG 20 1376 myoC-1077 + GGGAAGGAAAAUGUGGCUGU 20 1377 myoC-1078 + GGAAGGAAAAUGUGGCUGUU 20 1378 myoC-1079 + UGAGCUU UCCUGAAGCAUUG 20 1379 myoC-1080 + UCCUGAAGCAUUGUGGCUCU 20 1380 myoC-1081 + AGCAUUGUGGCUCUCGGUCC 20 1381 myoC-1082 + GGAGUCUGACGUGAUCAGUG 20 1382 myoC-1083 + ACGUGAUCAGUGAGGACUGA 20 1383 myoC-1084 + GUCCCCCUCCACCUCCCCUG 20 1384 myoC-1085 + CCCCCCUCACAGAGAAUCAC 20 1385 myoC-1086 + CCCCCUCACAGAGAAUCACA 20 1386 myoC-1087 + CACAGAACACGAGAGCUGCA 20 1387 myoC-1088 + ACAGAACACGAGAGCUGCAA 20 1388 myoC-1089 + CUU UAUAGCAGAGAAGACUA 20 1389 myoC-1090 + AGCAGAGAAGACUAUGGCCC 20 1390 myoC-1091 + GCAGAGAAGACUAUGGCCCA 20 1391 myoC-1092 + AGAAGACUAUGGCCCAGGGA 20 1392 myoC-1093 + G AAGG AG AG ACACU UGCCCA 20 1393 myoC-1094 + ACG G U CG C AC AG CC A ACC A A 20 1394 myoC-1095 + AACCGAGUCUCCUGAU UCCA 20 1395 myoC-1096 + GCAUAAGCCAAGUCCACCAC 20 1396 myoC-1097 + C A U A AG CCA AG U CC ACC AC A 20 1397 myoC-1098 + UCACU UCU UCCG UG AAU U AA 20 1398 myoC-1099 + CU UCCGUGAAUUAACGGCCU 20 1399 myoC-1100 + CCUAUAUUCCCAUUAAAUAA 20 1400 myoC-1101 + U UAAAUAAAGGCCUUCGUGA 20 1401 myoC-1102 + AG G A A A ACCC A U G C AC ACCC 20 1402 myoC-1103 + CAAGCAGAGAAAAGAUAAAA 20 1403 myoC-1104 + G A A A AG A U AAA A AG G C U C AC 20 1404 myoC-1105 + A A A AG GCUCACAGG A AG C A A 20 1405 myoC-1106 + CG U G A AC A AC AC U G A AC A U C 20 1406 myoC-1107 + G U G A AC A AC AC U G A AC A U C U 20 1407 myoC-1108 + UCCCUGCAGUCCCCACCUCC 20 1408 myoC-1109 + CCCACCUCCUGGAAUUCUCC 20 1409 myoC-1110 + UCCUGGAAUUCUCCUGGACG 20 1410 myoC-1111 + UGGAAUUCUCCUGGACGUGG 20 1411 myoC-1112 + UGGAGGCCCCU UUCCCUCUG 20 1412 myoC-1113 + UUCCCUCUCCAUUUCCUU UC 20 1413 myoC-1114 + UCCAUUUCCUUUCUGGAGCC 20 1414 myoC-1115 + CUU UCUGGAGCCUGGAGCCA 20 1415 myoC-1116 + GUCUCCAGCUCAGAUGCACC 20 1416 myoC-1117 - AGCAGUGACUGCUGACAGCA 20 1417 myoC-1118 - CACGGAGUGACCUGCAGCGC 20 1418 myoC-1119 - ACGGAGUGACCUGCAGCGCA 20 1419 myoC-1120 - CGGAGUGACCUGCAGCGCAG 20 1420 myoC-1121 - AGUGACCUGCAGCGCAGGGG 20 1421 myoC-1122 - GGGGAGGAGAAGAAAAAGAG 20 1422 myoC-1123 - GGGAGGAGAAGAAAAAGAGA 20 1423 myoC-1124 - AAG AAAG ACAG AU UCAU UCA 20 1424 myoC-1125 - AG AAAG ACAG AU UCAU U CAA 20 1425 myoC-1126 - ACAG AU UCAU UCAAGGGCAG 20 1426 myoC-1127 - CAGAUUCAUUCAAGGGCAGU 20 1427 myoC-1128 - GGGCAGUGGGAAUUGACCAC 20 1428 myoC-1129 - GGCAGUGGGAAUUGACCACA 20 1429 myoC-1130 - GAUUAUAGUCCACG UGAUCC 20 1430 myoC-1131 - AUUAUAGUCCACGUGAUCCU 20 1431 myoC-1132 - UCCACGUGAUCCUGGGUUCU 20 1432 myoC-1133 - ACGUGAUCCUGGGUUCUAGG 20 1433 myoC-1134 - GAUCCUGGGUUCUAGGAGGC 20 1434 myoC-1135 - AUCCUGGGUUCUAGGAGGCA 20 1435 myoC-1136 - UAGGAGGCAGGGCUAUAUUG 20 1436 myoC-1137 - AGGAGGCAGGGCUAUAUUGU 20 1437 myoC-1138 - GGAGGCAGGGCUAUAUUGUG 20 1438 myoC-1139 - GAGGCAGGGCUAUAUUGUGG 20 1439 myoC-1140 - AGGCAGGGCUAUAUUGUGGG 20 1440 myoC-1141 - G G G G G G A A A A A A U C AG U U C A 20 1441 myoC-1142 - G G G G G A A A A A A U C AG U U CAA 20 1442 myoC-1143 - A A A A U C AG U U C A AG G G A AG U 20 1443 myoC-1144 - A A A U C AG U U C A AG G G A AG U C 20 1444 myoC-1145 - GUAAU UCUGAGCAAGUCACA 20 1445 myoC-1146 - AAGUCACAAGGUAGUAACUG 20 1446 myoC-1147 - UUACUUAGUU UCUCCUUAUU 20 1447 myoC-1148 - UUAGGAACUCUUU UUCUCUG 20 1448 myoC-1149 - UCUGUGGAGUUAGCAGCACA 20 1449 myoC-1150 - CUGUGGAGUUAGCAGCACAA 20 1450 myoC-1151 - GCAAUCCCGUUUCU UUUAAC 20 1451 myoC-1152 - AG CCA A AC AG A U U C A AG CC U 20 1452 myoC-1153 - GGUCU UGCUGACUAUAUGAU 20 1453 myoC-1154 - A A A A UGAGACUAGUACCCUU 20 1454 myoC-1155 - UUUGUAAAUGUCUCAAGUUC 20 1455 myoC-1156 - CAAACUGUGUUUCUCCACUC 20 1456 myoC-1157 - ACUG UGU UUCUCCACUCUGG 20 1457 myoC-1158 - ACUCUGGAGGUGAGUCUGCC 20 1458 myoC-1159 - CUCUGGAGGUGAGUCUGCCA 20 1459 myoC-1160 - GUGAGUCUGCCAGGGCAGUU 20 1460 myoC-1161 - ACAAGUAUUGACACUGUUGU 20 1461 myoC-1162 - AACAAC AU AA AG U U G CU CAA 20 1462 myoC-1163 - AAGGCAAUCAU UAUUUCAAG 20 1463 myoC-1164 - AAAGUUACU UCUGACAGUU U 20 1464 myoC-1165 - GACAGU UUUGGUAUAU UUAU 20 1465 myoC-1166 - UGCUU UUUGUUUU UUCUCUU 20 1466 myoC-1167 - GCUUU UUGU UUUU UCUCUUU 20 1467 myoC-1168 - UGGGUUUAUUAAUGUAAAGC 20 1468 myoC-1169 - GGGUUUAUUAAUGUAAAGCA 20 1469 myoC-1170 - AAAGCCUGUGAAUUUGAAUG 20 1470 myoC-1171 - AUAGAGCCAUAAACUCAAAG 20 1471 myoC-1172 + U UAUUACCACUU UGAGUUUA 20 1472 myoC-1173 + GUUUAUGGCUCUAUUCGCAA 20 1473 myoC-1174 + AAAUGUUAAAUUUAGU UAGA 20 1474 myoC-1175 + UGUUAAAU UUAGUUAGAAGG 20 1475 myoC-1176 + U UUUCCUCAUUCAAAUUCAC 20 1476 myoC-1177 + AUUCAAAU UCACAGGCUUUC 20 1477 myoC-1178 + UCACAGGCU UUCUGGACUGU 20 1478 myoC-1179 + GAGAAAAAACAAAAAGCAAA 20 1479 myoC-1180 + UAAAUAUUUCCAAACUGCCC 20 1480 myoC-1181 + UGGCAGACUCACCUCCAGAG 20 1481 myoC-1182 + AGAUUCUAU UCUUAUUUGAU 20 1482 myoC-1183 + GAACU U G AG ACAU UUACAAA 20 1483 myoC-1184 + AACUUGAGACAUUUACAAAU 20 1484 myoC-1185 + GUUUGUU UACAGCUGACCAA 20 1485 myoC-1186 + U UUGUUUACAGCUGACCAAA 20 1486 myoC-1187 + UCAUAUAGUCAGCAAGACCU 20 1487 myoC-1188 + GACCUAGGCUUGAAUCUGU U 20 1488 myoC-1189 + AUCUGUUUGGCUUUACUCUU 20 1489 myoC-1190 + U UUCUUCCUGUUAAAAGAAA 20 1490 myoC-1191 + U UCUUCCUGUUAAAAGAAAC 20 1491 myoC-1192 + GAGAAAAAGAGUUCCUAAUA 20 1492 myoC-1193 + CAGAAUUACUCAGCUUGUAA 20 1493 myoC-1194 + AAAAUAUAGUAUUAGAAAUC 20 1494 myoC-1195 + AGCCCUGCCUCCUAGAACCC 20 1495 myoC-1196 + UCCUAGAACCCAGGAUCACG 20 1496 myoC-1197 + CACGUGGACUAUAAUCCCUG 20 1497 myoC-1198 + CUUCUCCUCCCCUGCGCUGC 20 1498 myoC-1199 + GCAGUCACUGCUGAGCUGCG 20 1499 myoC-1200 + CAGUCACUGCUGAGCUGCGU 20 1500 myoC-1201 + AGUCACUGCUGAGCUGCGUG 20 1501 myoC-1202 + UGCUGAGCUGCGUGGGGUGC 20 1502 myoC-1203 + AGCUGCGUGGGGUGCUGGUC 20 1503 myoC-1204 + GCUGCGUGGGGUGCUGGUCA 20 1504 myoC-1205 - UU UGAAAU UAGACCUCCUGC 20 1505 myoC-1206 - UUCCCCAGAUU UCACCAAUG 20 1506 myoC-1207 - GAUUUCACCAAUGAGGU UCU 20 1507 myoC-1208 - CAG AG U AAG AACU G AU U U AG 20 1508 myoC-1209 - UUAGAGGCUAACAUUGACAU 20 1509 myoC-1210 - GGGAAAUCUGCCGCUUCUAU 20 1510 myoC-1211 - UUCUAUAGGAAUGCUCUCCC 20 1511 myoC-1212 - GGAAUGCUCUCCCUGGAGCC 20 1512 myoC-1213 - UGCUCUCCCUGGAGCCUGGU 20 1513 myoC-1214 - GCUCUCCCUGGAGCCUGGUA 20 1514 myoC-1215 - AGGGUGCUGUCCUUGUGUUC 20 1515 myoC-1216 + CACAAGGACAGCACCCUACC 20 1516 myoC-1217 + ACAGCACCCUACCAGGCUCC 20 1517 myoC-1218 + CAGCACCCUACCAGGCUCCA 20 1518 myoC-1219 + GGAGAGCAUUCCUAUAGAAG 20 1519 myoC-1220 + U UAAAACAACUGUGUAUCUU 20 1520 myoC-1221 + UAAAACAACUGUGUAUCUUU 20 1521 myoC-1222 + UAAUUUCAGUCUUGCAUCUC 20 1522 myoC-1223 + GUGCAUGCCAAGAACCUCAU 20 1523 myoC-1224 + AGAACCUCAU UGGUGAAAUC 20 1524 myoC-1225 + GAACCUCAUUGGUGAAAUCU 20 1525 myoC-1226 + AACCUCAU UGGUGAAAUCUG 20 1526 myoC-1227 + AUAUAAAAUAUAGAUUACAA 20 1527 myoC-1228 + UGUUAAAAACAAGAUCCAGC 20 1528 myoC-1229 + UAAAAACAAGAUCCAGCAGG 20 1529 myoC-1230 + AAAAUGUCUGUGAUUUCUAU 20 1530 myoC-1231 - CUGAGCUGGAGACUCCU 17 1531 myoC-1232 - GGAGACUCCUUGGCUCC 17 1532 myoC-1233 - GGCUCCAGGCUCCAGAA 17 1533 myoC-1234 - AGGCUCCAG A A AG G AAA 17 1534 myoC-1235 - CCAGAAAGGAAAUGGAG 17 1535 myoC-1236 - CAGAAAGGAAAUGGAGA 17 1536 myoC-1237 - GAGGGAAACUAGUCUAA 17 1537 myoC-1238 - UAGUCUAACGGAGAAUC 17 1538 myoC-1239 - UCUAACGGAGAAUCUGG 17 1539 myoC-1240 - CUAACGGAGAAUCUGGA 17 1540 myoC-1241 - UAACGGAGAAUCUGGAG 17 1541 myoC-1242 - GGACAGUGUUUCCUCAG 17 1542 myoC-1243 - GACAGUGUUUCCUCAGA 17 1543 myoC-1244 - UGUU UCCUCAGAGGGAA 17 1544 myoC-1245 - GUUUCCUCAGAGGGAAA 17 1545 myoC-1246 - UU UCCUCAGAGGGAAAG 17 1546 myoC-1247 - AAGGGGCCUCCACGUCC 17 1547 myoC-1248 - ACG U CC AG G AG A A U U CC 17 1548 myoC-1249 - U CC AG G AG A A U U CC AG G 17 1549 myoC-1250 - AGGAGAAUUCCAGGAGG 17 1550 myoC-1251 - GG AG AAU U CCAGGAGG U 17 1551 myoC-1252 - GAGAAUUCCAGGAGGUG 17 1552 myoC-1253 - CAGGAGGUGGGGACUGC 17 1553 myoC-1254 - AGGAGGUGGGGACUGCA 17 1554 myoC-1255 - GUGGGGACUGCAGGGAG 17 1555 myoC-1256 - UGGGGACUGCAGGGAGU 17 1556 myoC-1257 - GGGGACUGCAGGGAGUG 17 1557 myoC-1258 - GCAGGGAGUGGGGACGC 17 1558 myoC-1259 - CAGGGAGUGGGGACGCU 17 1559 myoC-1260 - AGGGAGUGGGGACGCUG 17 1560 myoC-1261 - GGGACGCUGGGGCUGAG 17 1561 myoC-1262 - GGACGCUGGGGCUGAGC 17 1562 myoC-1263 - GCUGAGCGGGUGCUGAA 17 1563 myoC-1264 - AGCGGGUGCUGAAAGGC 17 1564 myoC-1265 - GGUGCUGAAAGGCAGGA 17 1565 myoC-1266 - A AG G C AG G A AG G U G AAA 17 1566 myoC-1267 - AGGCAGGAAGGU G A A A A 17 1567 myoC-1268 - GGAAGGUG A A A AG G G C A 17 1568 myoC-1269 - AUGUUCAGUGUUGUUCA 17 1569 myoC-1270 - UGUUCAGUGUUGUUCAC 17 1570 myoC-1271 - GUUCAGUGUUG UUCACG 17 1571 myoC-1272 - AGUGUUGUUCACGGGGC 17 1572 myoC-1273 - GUGUUGUUCACGGGGCU 17 1573 myoC-1274 - UUUAUCUU UUCUCUGCU 17 1574 myoC-1275 - AUCUUUUCUCUGCUUGG 17 1575 myoC-1276 - AGAAGUCUAUU UCAUGA 17 1576 myoC-1277 - GAAGUCUAUUUCAUGAA 17 1577 myoC-1278 - UCAGCUGUUAAAAUUCC 17 1578 myoC-1279 - CAGCUGUUAAAAUUCCA 17 1579 myoC-1280 - AAAUUCCAGGGUGUGCA 17 1580 myoC-1281 - AAUUCCAGGGUGUGCAU 17 1581 myoC-1282 - UGGGUUUUCCUUCACGA 17 1582 myoC-1283 - CGAAGGCCU UUAUUUAA 17 1583 myoC-1284 - GAAGGCCUUUAUUUAAU 17 1584 myoC-1285 - UUAUUUAAUGGGAAUAU 17 1585 myoC-1286 - AAGCGAGCUCAUUUCCU 17 1586 myoC-1287 - CCUAGGCCGUUAAUUCA 17 1587 myoC-1288 - UUCACGGAAGAAGUGAC 17 1588 myoC-1289 - UUUUCUUUCAUGUCU UC 17 1589 myoC-1290 - UU UCUUUCAUGUCUUCU 17 1590 myoC-1291 - GCAACUACUCAGCCCUG 17 1591 myoC-1292 - ACUACUCAGCCCUGUGG 17 1592 myoC-1293 - CAGCCCUG UGGUGGACU 17 1593 myoC-1294 - ACU UGGCUUAUGCAAGA 17 1594 myoC-1295 - A AG ACG G U CG A A A ACC U 17 1595 myoC-1296 - UCGAAAACCU UGG AAUC 17 1596 myoC-1297 - CUUGGAAUCAGGAGACU 17 1597 myoC-1298 - AGACUCGGUUU UCUUUC 17 1598 myoC-1299 - CUU UCUGGUUCUGCCAU 17 1599 myoC-1300 - CUGGU UCUGCCAUUGGU 17 1600 myoC-1301 - GGUUGGCUGUGCGACCG 17 1601 myoC-1302 - GUUGGCUGUGCGACCGU 17 1602 myoC-1303 - AAGUGUCUCUCCUUCCC 17 1603 myoC-1304 - AGUGUCUCUCCUUCCCU 17 1604 myoC-1305 - CCCUGUGAUUCUCUGUG 17 1605 myoC-1306 - CCUGUGAUUCUCUGUGA 17 1606 myoC-1307 - CUGUGAU UCUCUGUGAG 17 1607 myoC-1308 - UGUGAU UCUCUGUGAGG 17 1608 myoC-1309 - GUGAUUCUCUGUGAGGG 17 1609 myoC-1310 - UGAGGGGGGAUGUUGAG 17 1610 myoC-1311 - GAGGGGGGAUGUUGAGA 17 1611 myoC-1312 - AGGGGGGAUGUUGAGAG 17 1612 myoC-1313 - GGGAUG UUGAGAGGGGA 17 1613 myoC-1314 - AUGUUGAGAGGGGAAGG 17 1614 myoC-1315 - GGGGAAGGAGGCAGAGC 17 1615 myoC-1316 - UGGAGCAGCUGAGCCAC 17 1616 myoC-1317 - GGAGCAGCUGAGCCACA 17 1617 myoC-1318 - GAGCAGCUGAGCCACAG 17 1618 myoC-1319 - CAGCUGAGCCACAGGGG 17 1619 myoC-1320 - CUGAGCCACAGGGGAGG 17 1620 myoC-1321 - AGCCACAGGGGAGGUGG 17 1621 myoC-1322 - GCCACAGGGGAGGUGGA 17 1622 myoC-1323 - CCACAGGGGAGGUGGAG 17 1623 myoC-1324 - CACAGGGGAGGUGGAGG 17 1624 myoC-1325 - GGGAGGUGGAGGGGGAC 17 1625 myoC-1326 - GGUGGAGGGGGACAGGA 17 1626 myoC-1327 - GAGGGGGACAGGAAGGC 17 1627 myoC-1328 - GGAAGGCAGGCAGAAGC 17 1628 myoC-1329 - G A AG G C AG G C AG A AG C U 17 1629 myoC-1330 - UGAUCACGUCAGACUCC 17 1630 myoC-1331 - GAGAGCCACAAUGCUUC 17 1631 myoC-1332 - UCCCUAAGCAUAGACAA 17 1632 myoC-1333 - AGAAUGCAGAGACUAAC 17 1633 myoC-1334 - AUGCAGAGACUAACUGG 17 1634 myoC-1335 - UGGUGGUAGCU UUUGCC 17 1635 myoC-1336 - GCCUGGCAU U C A AAA AC 17 1636 myoC-1337 - CCUGGCAU UCAAAAACU 17 1637 myoC-1338 - A AC U G G G CC AG AG C A AG 17 1638 myoC-1339 + GCAU UUUCCACUUGCUC 17 1639 myoC-1340 + CCCAGUU UUUGAAUGCC 17 1640 myoC-1341 + AGUCUCUGCAUUCU UU U 17 1641 myoC-1342 + GCAU UCUUU UUGGUUAU 17 1642 myoC-1343 + UGCCAUUGUCUAUGCU U 17 1643 myoC-1344 + GCCAU UGUCUAUGCUUA 17 1644 myoC-1345 + UUGUCUAUGCUUAGGGA 17 1645 myoC-1346 + CUUAGGGAAGGAAAAUG 17 1646 myoC-1347 + AAGGAAAAUGUGGCUGU 17 1647 myoC-1348 + AGGAAAAUGUGGCUGU U 17 1648 myoC-1349 + GCUUUCCUGAAGCAUUG 17 1649 myoC-1350 + UGAAGCAU UGUGGCUCU 17 1650 myoC-1351 + AUUGUGGCUCUCGGUCC 17 1651 myoC-1352 + GUCUGACGUGAUCAGUG 17 1652 myoC-1353 + UGAUCAGUGAGGACUGA 17 1653 myoC-1354 + CCCCUCCACCUCCCCUG 17 1654 myoC-1355 + CCCUCACAGAGAAUCAC 17 1655 myoC-1356 + CCUCACAGAGAAUCACA 17 1656 myoC-1357 + AGAACACGAGAGCUGCA 17 1657 myoC-1358 + GAACACGAGAGCUGCAA 17 1658 myoC-1359 + UAUAGCAGAGAAGACUA 17 1659 myoC-1360 + AGAGAAGACUAUGGCCC 17 1660 myoC-1361 + GAGAAGACUAUGGCCCA 17 1661 myoC-1362 + AGACUAUGGCCCAGGGA 17 1662 myoC-1363 + GGAGAGACACUUGCCCA 17 1663 myoC-1364 + G U CG CACAG CCA ACCA A 17 1664 myoC-1365 + CGAG UCUCCUGAUUCCA 17 1665 myoC-1366 + U AAGCCAAG U CC ACCAC 17 1666 myoC-1367 + AAGCCAAGUCCACCACA 17 1667 myoC-1368 + CU UCUUCCGUGAAU UAA 17 1668 myoC-1369 + CCGUGAAU UAACGGCCU 17 1669 myoC-1370 + AU AU U CCCAU UAAAUAA 17 1670 myoC-1371 + AAUAAAGGCCU UCGUGA 17 1671 myoC-1372 + AA AACCC AU G CACACCC 17 1672 myoC-1373 + G C AG AG A A A AG A U A A A A 17 1673 myoC-1374 + A AG A U A AA A AG G C U C AC 17 1674 myoC-1375 + AGGCUCACAGGAAGCAA 17 1675 myoC-1376 + G A AC A AC AC U G A AC A U C 17 1676 myoC-1377 + A AC A AC AC U G A AC A U C U 17 1677 myoC-1378 + CUGCAGUCCCCACCUCC 17 1678 myoC-1379 + ACCUCCUGGAAUUCUCC 17 1679 myoC-1380 + UGGAAUUCUCCUGGACG 17 1680 myoC-1381 + AAUUCUCCUGGACGUGG 17 1681 myoC-1382 + AGGCCCCUU UCCCUCUG 17 1682 myoC-1383 + CCUCUCCAUU UCCUUUC 17 1683 myoC-1384 + AUU UCCUU UCUGGAGCC 17 1684 myoC-1385 + UCUGGAGCCUGGAGCCA 17 1685 myoC-1386 + UCCAGCUCAGAUGCACC 17 1686 myoC-1387 - AGUGACUGCUGACAGCA 17 1687 myoC-1388 - GGAGUGACCUGCAGCGC 17 1688 myoC-1389 - GAGUGACCUGCAGCGCA 17 1689 myoC-1390 - AGUGACCUGCAGCGCAG 17 1690 myoC-1391 - GACCUGCAGCGCAGGGG 17 1691 myoC-1392 - GAGGAGAAGAAAAAGAG 17 1692 myoC-1393 - AGGAGAAGAAAAAGAGA 17 1693 myoC-1394 - AAAGACAGAUUCAUUCA 17 1694 myoC-1395 - AAGACAGAUUCAUUCAA 17 1695 myoC-1396 - GAUUCAUUCAAGGGCAG 17 1696 myoC-1397 - AUUCAUUCAAGGGCAGU 17 1697 myoC-1398 - CAGUGGGAAUUGACCAC 17 1698 myoC-1399 - AGUGGGAAUUGACCACA 17 1699 myoC-1400 - UAUAGUCCACGUGAUCC 17 1700 myoC-1401 - AUAGUCCACGUGAUCCU 17 1701 myoC-1402 - ACGUGAUCCUGGGUUCU 17 1702 myoC-1403 - UGAUCCUGGGUUCUAGG 17 1703 myoC-1404 - CCUGGGUUCUAGGAGGC 17 1704 myoC-1405 - CUGGG UUCUAGGAGGCA 17 1705 myoC-1406 - GAGGCAGGGCUAUAUUG 17 1706 myoC-1407 - AGGCAGGGCUAUAUUGU 17 1707 myoC-1408 - GGCAGGGCUAUAUUGUG 17 1708 myoC-1409 - GCAGGGCUAUAUUGUGG 17 1709 myoC-1410 - CAGGGCUAUAUUGUGGG 17 1710 myoC-1411 - G G G A A A A A A U C AG U U C A 17 1711 myoC-1412 - G G A A A A A A U C AG U U C A A 17 1712 myoC-1413 - AUCAGU UCAAGGGAAGU 17 1713 myoC-1414 - U C AG U U C A AG G G A AG U C 17 1714 myoC-1415 - AUUCUGAGCAAGUCACA 17 1715 myoC-1416 - U C AC A AG GUAGUAACUG 17 1716 myoC-1417 - CUUAGUUUCUCCUUAUU 17 1717 myoC-1418 - GGAACUCU UUU UCUCUG 17 1718 myoC-1419 - G U G G AG U U AG C AG C AC A 17 1719 myoC-1420 - UGGAGU UAGCAGCACAA 17 1720 myoC-1421 - AUCCCGU UUCUU UUAAC 17 1721 myoC-1422 - C A A AC AG A U U C A AG CC U 17 1722 myoC-1423 - CUUGCUGACUAUAUGAU 17 1723 myoC-1424 - AUGAGACUAGUACCCUU 17 1724 myoC-1425 - GUAAAUGUCUCAAGU UC 17 1725 myoC-1426 - ACUG UGU UUCUCCACUC 17 1726 myoC-1427 - GUGUUUCUCCACUCUGG 17 1727 myoC-1428 - CUGGAGGUGAGUCUGCC 17 1728 myoC-1429 - UGGAGG UGAGUCUGCCA 17 1729 myoC-1430 - AGUCUGCCAGGGCAGUU 17 1730 myoC-1431 - AGUAU UGACACUGUUG U 17 1731 myoC-1432 - A AC A U A A AG U U G C U C A A 17 1732 myoC-1433 - GCAAUCAUUAUUUCAAG 17 1733 myoC-1434 - GUUACUUCUGACAGU UU 17 1734 myoC-1435 - AGUUU UGGUAUAUUUAU 17 1735 myoC-1436 - UU UUUGUUU UUUCUCUU 17 1736 myoC-1437 - UU UUGUUUU UUCUCU UU 17 1737 myoC-1438 - GUUUAUUAAUGUAAAGC 17 1738 myoC-1439 - UU UAUUAAUGUAAAGCA 17 1739 myoC-1440 - GCCUGUGAAUU UGAAUG 17 1740 myoC-1441 - GAG CC AU AAACU CAA AG 17 1741 myoC-1442 + UUACCACUU UGAGUUUA 17 1742 myoC-1443 + UAUGGCUCUAU UCGCAA 17 1743 myoC-1444 + UGUUAAAU UUAGUUAGA 17 1744 myoC-1445 + UAAAUUUAGU UAGAAGG 17 1745 myoC-1446 + UCCUCAUUCAAAUUCAC 17 1746 myoC-1447 + CAA A UUCACAGGCU UUC 17 1747 myoC-1448 + CAGGCUUUCUGGACUGU 17 1748 myoC-1449 + A A A A A AC A A A A AG CAA A 17 1749 myoC-1450 + AUAUUUCCAAACUGCCC 17 1750 myoC-1451 + CAGACUCACCUCCAGAG 17 1751 myoC-1452 + U UCUAUUCUUAU UUGAU 17 1752 myoC-1453 + CU UGAGACAUUUACAAA 17 1753 myoC-1454 + U UGAGACAUUUACAAAU 17 1754 myoC-1455 + UGUU UACAGCUGACCAA 17 1755 myoC-1456 + GUUUACAGCUGACCAAA 17 1756 myoC-1457 + UAUAGUCAGCAAGACCU 17 1757 myoC-1458 + CUAGGCUUGAAUCUGU U 17 1758 myoC-1459 + UGUU UGGCU UUACUCUU 17 1759 myoC-1460 + CU UCCUGUU A A A AG AAA 17 1760 myoC-1461 + U UCCUGU U AAAAG AAAC 17 1761 myoC-1462 + A A A A AG AGUUCCUAAUA 17 1762 myoC-1463 + AAUUACUCAGCUUGUAA 17 1763 myoC-1464 + AUAUAGUAUUAGAAAUC 17 1764 myoC-1465 + CCUGCCUCCUAGAACCC 17 1765 myoC-1466 + UAGAACCCAGGAUCACG 17 1766 myoC-1467 + GUGGACUAUAAUCCCUG 17 1767 myoC-1468 + CUCCUCCCCUGCGCUGC 17 1768 myoC-1469 + GUCACUGCUGAGCUGCG 17 1769 myoC-1470 + UCACUGCUGAGCUGCGU 17 1770 myoC-1471 + CACUGCUGAGCUGCGUG 17 1771 myoC-1472 + UGAGCUGCGUGGGGUGC 17 1772 myoC-1473 + UGCGUGGGGUGCUGGUC 17 1773 myoC-1474 + GCGUGGGGUGCUGGUCA 17 1774 myoC-1475 - GAAAUUAGACCUCCUGC 17 1775 myoC-1476 - CCCAGAU UUCACCAAUG 17 1776 myoC-1477 - UUCACCAAUGAGGU UCU 17 1777 myoC-1478 - AGUAAGAACUGAUU UAG 17 1778 myoC-1479 - GAGGCUAACAUUGACAU 17 1779 myoC-1480 - AAAUCUGCCGCUUCUAU 17 1780 myoC-1481 - UAUAGGAAUGCUCUCCC 17 1781 myoC-1482 - AUGCUCUCCCUGGAGCC 17 1782 myoC-1483 - UCUCCCUGGAGCCUGGU 17 1783 myoC-1484 - CUCCCUGGAGCCUGGUA 17 1784 myoC-1485 - GUGCUGUCCUUGUGU UC 17 1785 myoC-1486 + AAGGACAGCACCCUACC 17 1786 myoC-1487 + GCACCCUACCAGGCUCC 17 1787 myoC-1488 + CACCCUACCAGGCUCCA 17 1788 myoC-1489 + G AGCAU UCCU AU AG AAG 17 1789 myoC-1490 + AAACAACUGUG UAUCUU 17 1790 myoC-1491 + AACAACUGUGUAUCUU U 17 1791 myoC-1492 + U UUCAGUCU UGCAUCUC 17 1792 myoC-1493 + CAUGCCAAGAACCUCAU 17 1793 myoC-1494 + ACCUCAUUGGUGAAAUC 17 1794 myoC-1495 + CCUCAU UGGUGAAAUCU 17 1795 myoC-1496 + CUCAU UGGUGAAAUCUG 17 1796 myoC-1497 + UAAAAUAUAGAUUACAA 17 1797 myoC-1498 + UAAAAACAAGAUCCAGC 17 1798 myoC-1499 + AAACAAGAUCCAGCAGG 17 1799 myoC-1500 + AUGUCUGUGAUUUCUAU 17 1800
Table 5E provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the MYOC gene. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule to cause a steric block in the promoter region to block transcription elongation resulting in the repression of the MYOC gene. Any of the targeting domains in the table can be used with a S. aureus eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 5E
Figure imgf000195_0001
myoC-1812 - GGCAGAGGUUUCCUCUCCAG 20 2032 myoC-676 - GCAGAGGUUUCCUCUCCAGC 20 1006 myoC-677 - CAGAGGU UUCCUCUCCAGCU 20 1097 myoC-678 - AGAGGUUUCCUCUCCAGCUG 20 1085 myoC-679 - GAGGUUUCCUCUCCAGCUGG 20 1005 myoC-1817 - UGGGGGAGCCCUGCAAGCAC 20 2033 myoC-680 - GGGGGAGCCCUGCAAGCACC 20 1020 myoC-1819 - CCCUG C A AG CACCCGGGGUC 20 2034 myoC-1820 - CACCCGGGGUCCUGGGUGUC 20 2035 myoC-1821 - GU UGUUUUGUUAUCACUCUC 20 2036 myoC-686 - UUGUUUUGU UAUCACUCUCU 20 1124 myoC-1823 - AGGCAU UCAUUGACAAU UUA 20 2037 myoC-1824 - UACUUAUAUCUGCCAGACAC 20 2038 myoC-1825 - CAGACACCAGAGACAAAAUG 20 2039 myoC-1826 - GCAGUCACUGCCCUACCUUC 20 2040 myoC-690 - CAGUCACUGCCCUACCU UCG 20 1100 myoC-1828 - CGUGGAGGUGACAGUU UCUC 20 2041 myoC-692 - GUGGAGGUGACAGUUUCUCA 20 1021 myoC-1830 - AGU UUCUCAUGGAAGACGUG 20 2042 myoC-1831 - U UCUCAUGGAAGACGUGCAG 20 2043 myoC-1832 - CAGCCAACUUAAACCCAGUG 20 2044 myoC-1833 - CAACU UAAACCCAGUGCUGA 20 2045 myoC-1834 - U UAAACCCAGUGCUGAAAGA 20 2046 myoC-693 - UAAACCCAGUGCUGAAAGAA 20 1113 myoC-1836 - G A A AG G AAA U A A AC ACC A U C 20 2047 myoC-1837 - AG G AAA U A A AC ACC A U C U U G 20 2048 myoC-1838 - CCCUGCUGCCUCCAUCGUGC 20 2049 myoC-695 - CCUGCUGCCUCCAUCGUGCC 20 1104 myoC-1840 - GUGCCCGGAGGCCCCCAAGC 20 2050 myoC-1841 - GCUGGCCUGCCUCGCU UCCC 20 2051 myoC-1842 - CGUGAAUCGUCCUGGUGCAU 20 2052 myoC-1843 - AUCGUCCUGGUGCAUCUGAG 20 2053 myoC-1844 - UCGUCCUGGUGCAUCUGAGC 20 2054 myoC-1845 - GACUCCU UGGCUCCAGGCUC 20 2055 myoC-1846 - CCUUGGCUCCAGGCUCCAGA 20 2056 myoC-963 - CU UGGCUCCAGGCUCCAGAA 20 1263 myoC-1848 - CUCCAGGCUCCAGAAAGGAA 20 2057 myoC-964 - UCCAGGCUCCAG A A AG G AAA 20 1264 myoC-1850 - CAGGCUCCAGAAAGGAAAUG 20 2058 myoC-1851 - GGCUCCAGAAAGGAAAUGGA 20 2059 myoC-965 - GCUCCAGAAAGGAAAUGGAG 20 1265 myoC-966 - CUCCAGAAAGGAAAUGGAGA 20 1266 myoC-1854 - UGGAGAGGGAAACUAG UCUA 20 2060 myoC-967 - GGAGAGGGAAACUAGUCUAA 20 1267 myoC-1856 - AGAGGGAAACUAGUCUAACG 20 2061 myoC-1857 - AAACUAGUCUAACGGAGAAU 20 2062 myoC-968 - AACUAGUCUAACGGAGAAUC 20 1268 myoC-1859 - CUAGUCUAACGGAGAAUCUG 20 2063 myoC-969 - UAGUCUAACGGAGAAUCUGG 20 1269 myoC-970 - AGUCUAACGGAGAAUCUGGA 20 1270 myoC-1862 - UGGAGGGGACAGUGU UUCCU 20 2064 myoC-1863 - GAGGGGACAGUGUUUCCUCA 20 2065 myoC-972 - AGGGGACAGUGUUUCCUCAG 20 1272 myoC-973 - GGGGACAGUGUUUCCUCAGA 20 1273 myoC-1866 - ACAGUGUUUCCUCAGAGGGA 20 2066 myoC-974 - CAGUGUUUCCUCAGAGGGAA 20 1274 myoC-1868 - GGGAAAGGGGCCUCCACGUC 20 2067 myoC-977 - GGAAAGGGGCCUCCACGUCC 20 1277 myoC-1870 - AAAGGGGCCUCCACGUCCAG 20 2068 myoC-1871 - CUCCACGUCCAGGAGAAUUC 20 2069 myoC-978 - UCCACGUCCAGGAGAAUUCC 20 1278 myoC-1873 - GUCCAGGAGAAUUCCAGGAG 20 2070 myoC-980 - UCCAGGAGAAUUCCAGGAGG 20 1280 myoC-981 - CCAGGAGAAUUCCAGGAGGU 20 1281 myoC-1876 - AUUCCAGGAGGUGGGGACUG 20 2071 myoC-983 - U UCCAGGAGGUGGGGACUGC 20 1283 myoC-984 - UCCAGGAGGUGGGGACUGCA 20 1284 myoC-1879 - GGAGGUGGGGACUGCAGGGA 20 2072 myoC-985 - GAGGUGGGGACUGCAGGGAG 20 1285 myoC-986 - AGGUGGGGACUGCAGGGAGU 20 1286 myoC-1882 - GACUGCAGGGAGUGGGGACG 20 2073 myoC-988 - ACUGCAGGGAGUGGGGACGC 20 1288 myoC-1884 - AGGGAGUGGGGACGCUGGGG 20 2074 myoC-1885 - AGUGGGGACGCUGGGGCUGA 20 2075 myoC-1886 - ACGCUGGGGCUGAGCGGGUG 20 2076 myoC-1887 - GCUGAGCGGGUGCUGAAAGG 20 2077 myoC-994 - CUGAGCGGGUGCUGAAAGGC 20 1294 myoC-1889 - GGGUGCUGAAAGGCAGGAAG 20 2078 myoC-1890 - CU G A A AG G C AG G A AG G U G A A 20 2079 myoC-1891 - GGAAGGUGAAAAGGG C A AG G 20 2080 myoC-1892 - CCAGAUGUUCAG UGUUGUUC 20 2081 myoC-999 - CAGAUGUUCAGUGU UGUUCA 20 1299 myoC-1894 - GU UCAGUGUUGUUCACGGGG 20 2082 myoC-1002 - UUCAGUGUUGUUCACGGGGC 20 1302 myoC-1003 - UCAGUGUUGUUCACGGGGCU 20 1303 myoC-1897 - GGAGUUU UCCGUUGCUUCCU 20 2083 myoC-1898 - CCUU UUUAUCUU UUCUCUGC 20 2084 myoC-1004 - CU UUUUAUCU UUUCUCUGCU 20 1304 myoC-1900 - U UUUAUCUU UUCUCUGCUUG 20 2085 myoC-1005 - UUUAUCUUU UCUCUGCU UGG 20 1305 myoC-1902 - UAUCU UUUCUCUGCUUGGAG 20 2086 myoC-1903 - CU UUUCUCUGCUUGGAGGAG 20 2087 myoC-1904 - GAGGAGAAGAAGUCUAUU UC 20 2088 myoC-1905 - GAGAAGAAGUCUAU UUCAUG 20 2089 myoC-1006 - AGAAGAAGUCUAUUUCAUGA 20 1306 myoC-1907 - AAAGUCAGCUGUUAAAAUUC 20 2090 myoC-1908 - GUUAAAAUUCCAGGGUGUGC 20 2091 myoC-1909 - GUGUGCAUGGGUUUUCCUUC 20 2092 myoC-1910 - U UCACGAAGGCCU UUAU UUA 20 2093 myoC-1013 - UCACGAAGGCCUU UAUU UAA 20 1313 myoC-1014 - CACGAAGGCCUUUAUUUAAU 20 1314 myoC-1913 - GCCUU UAUU UAAUGGGAAUA 20 2094 myoC-1015 - CCUU UAUUUAAUGGGAAUAU 20 1315 myoC-1915 - AU UUAAUGGGAAUAUAGGAA 20 2095 myoC-1916 - AU UUCCUAGGCCGUUAAUUC 20 2096 myoC-1017 - UUUCCUAGGCCGUUAAU UCA 20 1317 myoC-1918 - CCUAGGCCGU UAAUUCACGG 20 2097 myoC-1919 - UUAAUUCACGGAAGAAGUGA 20 2098 myoC-1018 - UAAUUCACGGAAGAAGUGAC 20 1318 myoC-1921 - AGUCUUUUCUUUCAUGUCUU 20 2099 myoC-1922 - GGCAACUACUCAGCCCUGUG 20 2100 myoC-1923 - ACU UGGCUUAUGCAAGACGG 20 2101 myoC-1924 - AUGCAAGACGGUCGAAAACC 20 2102 myoC-1025 - UGCAAGACGGUCGAAAACCU 20 1325 myoC-1926 - ACGGUCGAAAACCU UGGAAU 20 2103 myoC-1026 - CGGUCGAAAACCU UGGAAUC 20 1326 myoC-1928 - CAUUGGUUGGCUGUGCGACC 20 2104 myoC-1929 - GGGCAAGUGUCUCUCCU UCC 20 2105 myoC-1930 - CCUUGCAGCUCUCGUGU UCU 20 2106 myoC-1931 - ACACU UCCCUGUGAUUCUCU 20 2107 myoC-1932 - ACU UCCCUGUGAUUCUCUGU 20 2108 myoC-1035 - CU UCCCUGUGAU UCUCUGUG 20 1335 myoC-1036 - UUCCCUGUGAU UCUCUGUGA 20 1336 myoC-1037 - UCCCUGUGAUUCUCUGUGAG 20 1337 myoC-1038 - CCCUGUGAUUCUCUGUGAGG 20 1338 myoC-1937 - AU UCUCUGUGAGGGGGGAUG 20 2109 myoC-1938 - UCUCUGUGAGGGGGGAUGUU 20 2110 myoC-1939 - UCUGUGAGGGGGGAUGUUGA 20 2111 myoC-1040 - CUGUGAGGGGGGAUGU UGAG 20 1340 myoC-1041 - UGUGAGGGGGGAUGUUGAGA 20 1341 myoC-1042 - GUGAGGGGGGAUGUUGAGAG 20 1342 myoC-1943 - AGGGGGGAUGUUGAGAGGGG 20 2112 myoC-1043 - GGGGGGAUGUUGAGAGGGGA 20 1343 myoC-1945 - AUGUUGAGAGGGGAAGGAGG 20 2113 myoC-1946 - GAGAGGGGAAGGAGGCAGAG 20 2114 myoC-1045 - AGAGGGGAAGGAGGCAGAGC 20 1345 myoC-1948 - AGGAGGCAGAGCUGGAGCAG 20 2115 myoC-1949 - GAGCUGGAGCAGCUGAGCCA 20 2116 myoC-1046 - AGCUGGAGCAGCUGAGCCAC 20 1346 myoC-1047 - GCUGGAGCAGCUGAGCCACA 20 1347 myoC-1048 - CUGGAGCAGCUGAGCCACAG 20 1348 myoC-1953 - GCAGCUGAGCCACAGGGGAG 20 2117 myoC-1050 - CAGCUGAGCCACAGGGGAGG 20 1350 myoC-1955 - GCUGAGCCACAGGGGAGGUG 20 2118 myoC-1051 - CUGAGCCACAGGGGAGGUGG 20 1351 myoC-1052 - UGAGCCACAGGGGAGGUGGA 20 1352 myoC-1053 - GAGCCACAGGGGAGGUGGAG 20 1353 myoC-1959 - ACAGGGGAGGUGGAGGGGGA 20 2119 myoC-1055 - CAGGGGAGGUGGAGGGGGAC 20 1355 myoC-1961 - GAGGGGGACAGGAAGGCAGG 20 2120 myoC-1962 - GACAGGAAGGCAGGCAGAAG 20 2121 myoC-1963 - UCACUGAUCACGUCAGACUC 20 2122 myoC-1964 - GAUCACGUCAGACUCCAGGA 20 2123 myoC-1965 - UCACGUCAGACUCCAGGACC 20 2124 myoC-1966 - G ACCG AG AGCCACAAUGCU U 20 2125 myoC-1061 - ACCGAGAGCCACAAUGCUUC 20 1361 myoC-1968 - CAAUGCUUCAGGAAAGCUCA 20 2126 myoC-1969 - G G C A U U U G CCA A U A ACC A A A 20 2127 myoC-1970 - G CCA A U A ACC A A A A AG A A U G 20 2128 myoC-1971 - UUUUGCCUGGCAUUCAAAAA 20 2129 myoC-1972 - CUGGCAUUCAAAAACUGGGC 20 2130 myoC-1973 - CAAAAACUGGGCCAGAGCAA 20 2131 myoC-1068 - AAAAACUGGGCCAGAGCAAG 20 1368 myoC-1975 - CCAGAGCAAGUGGAAAAUGC 20 2132 myoC-1976 - CAGCAGUGACUGCUGACAGC 20 2133 myoC-1117 - AGCAGUGACUGCUGACAGCA 20 1417 myoC-1978 - GCACGGAGUGACCUGCAGCG 20 2134 myoC-1118 - CACGGAGUGACCUGCAGCGC 20 1418 myoC-1119 - ACGG AG UGACCUG CAG CG CA 20 1419 myoC-1120 - CGGAGUGACCUGCAGCGCAG 20 1420 myoC-1982 - GAGUGACCUGCAGCGCAGGG 20 2135 myoC-1121 - AGUGACCUGCAGCGCAGGGG 20 1421 myoC-1984 - UGACCUGCAGCGCAGGGGAG 20 2136 myoC-1985 - CCUGCAGCGCAGGGGAGGAG 20 2137 myoC-1986 - GCGCAGGGGAGGAGAAGAAA 20 2138 myoC-1987 - GCAGGGGAGGAGAAG A A A A A 20 2139 myoC-1988 - AGGGGAGGAGAAGAAAAAGA 20 2140 myoC-1122 - GGGGAGGAGAAGAAAAAGAG 20 1422 myoC-1990 - GAAAAAGAGAGGGAUAGUGU 20 2141 myoC-1991 - GAGAGGGAUAGUGUAUGAGC 20 2142 myoC-1992 - CAAG AAAG ACAG AU U CAU UC 20 2143 myoC-1993 - GACAGAUUCAUUCAAGGGCA 20 2144 myoC-1126 - ACAGAUUCAUUCAAGGGCAG 20 1426 myoC-1127 - CAGAUUCAUUCAAGGGCAGU 20 1427 myoC-1996 - AGGGCAGUGGGAAUUGACCA 20 2145 myoC-1128 - GGGCAGUGGGAAUUGACCAC 20 1428 myoC-1998 - GGAUUAUAGUCCACGUGAUC 20 2146 myoC-1999 - GUCCACGUGAUCCUGGGUUC 20 2147 myoC-1132 - UCCACGUGAUCCUGGGU UCU 20 1432 myoC-2001 - UGAUCCUGGGUUCUAGGAGG 20 2148 myoC-2002 - CUAGGAGGCAGGGCUAUAUU 20 2149 myoC-1136 - UAGGAGGCAGGGCUAUAU UG 20 1436 myoC-1137 - AGGAGGCAGGGCUAUAUUGU 20 1437 myoC-1138 - GGAGGCAGGGCUAUAU UGUG 20 1438 myoC-1139 - GAGGCAGGGCUAUAUUGUGG 20 1439 myoC-1140 - AGGCAGGGCUAUAUUGUGGG 20 1440 myoC-2008 - UGGGGGGAAAAAAUCAGUUC 20 2150 myoC-1141 - GGGGGGAAAAAAUCAGUUCA 20 1441 myoC-1142 - G G G G G A A A A A A U C AG U U C A A 20 1442 myoC-2011 - A A AA A U C AG U U C A AG G G A AG 20 2151 myoC-1143 - A A AA U C AG U U C A AG G G A AG U 20 1443 myoC-1144 - AAAUCAGU UCAAGGGAAGUC 20 1444 myoC-2014 - CUAUAUUUUUCCUUUACAAG 20 2152 myoC-2015 - CCUU UACAAGCUGAGUAAUU 20 2153 myoC-2016 - AG C A AG U C AC A AG G U AG U A A 20 2154 myoC-2017 - AUUACUUAGUUUCUCCUUAU 20 2155 myoC-1147 - U UACU UAGUUUCUCCU UAUU 20 1447 myoC-2019 - AU UAGGAACUCUUUU UCUCU 20 2156 myoC-1148 - UUAGGAACUCU UUUUCUCUG 20 1448 myoC-2021 - CUCUGUGGAGUUAGCAGCAC 20 2157 myoC-2022 - GGCAAUCCCGUUUCU UU UAA 20 2158 myoC-1151 - GCAAUCCCGUU UCUUU UAAC 20 1451 myoC-2024 - AUCCCGU U UCUUU UAACAGG 20 2159 myoC-2025 - AACAGG AAG AAAACAU UCCU 20 2160 myoC-2026 - CUGACUAUAUGAUUGGUUUU 20 2161 myoC-2027 - GCGAUGUU UACUAUCUGAUU 20 2162 myoC-2028 - UUUACUAUCUGAU UCAGAAA 20 2163 myoC-2029 - CUCAAGUUCAGGCUUAACUG 20 2164 myoC-2030 - AACUGCAGAACCAAUCAAAU 20 2165 myoC-2031 - CAGAACCAAUCAAAUAAGAA 20 2166 myoC-2032 - UCAAAUAAGAAUAGAAUCUU 20 2167 myoC-2033 - GCAAACUGUGUUUCUCCACU 20 2168 myoC-1156 - CAAACUGUGUU UCUCCACUC 20 1456 myoC-2035 - UGUGUUUCUCCACUCUGGAG 20 2169 myoC-2036 - CACUCUGGAGGUGAGUCUGC 20 2170 myoC-2037 - GGUGAGUCUGCCAGGGCAGU 20 2171 myoC-1160 - GUGAGUCUGCCAGGGCAGUU 20 1460 myoC-2039 - UUGCUUUU UGUUUUU UCUCU 20 2172 myoC-2040 - U UGGGUUUAUUAAUGUAAAG 20 2173 myoC-1168 - UGGGUUUAUUAAUGUAAAGC 20 1468 myoC-2042 - GGGAUUAU UAACCUACAGUC 20 2174 myoC-2043 - ACCUACAGUCCAGAAAGCCU 20 2175 myoC-2044 - AGUCCAGAAAGCCUGUGAAU 20 2176 myoC-2045 - CAGAAAGCCUGUGAAUUUGA 20 2177 myoC-2046 - GAAAGCCUGUGAAUU UGAAU 20 2178 myoC-1170 - AAAGCCUGUGAAUUUGAAUG 20 1470 myoC-2048 - AU UUAACAU UUUAUUCCAUU 20 2179 myoC-2049 - ACAUU UUAUUCCAUUGCGAA 20 2180 myoC-2050 - UGUGAUUUUGUCAUUACCAA 20 2181 myoC-2051 - U UGUUGCAGAUACG UUGUAA 20 2182 myoC-2052 - UAUU UAUACUCAAAACUACU 20 2183 myoC-2053 - CU UUGAAAUUAGACCUCCUG 20 2184 myoC-2054 - GUAAUCUAUAUU UUAUAUAU 20 2185 myoC-2055 - AUAUAUUUGAAAACAUCUUU 20 2186 myoC-2056 - AUAUUUGAAAACAUCU UUCU 20 2187 myoC-2057 - UUUGAAAACAUCUUUCUGAG 20 2188 myoC-2058 - G AG U U CCCCAG AU U UCACCA 20 2189 myoC-2059 - GU UCUUGGCAUGCACACACA 20 2190 myoC-2060 - GGCAUGCACACACACAGAGU 20 2191 myoC-2061 - ACACAGAGUAAGAACUGAU U 20 2192 myoC-2062 - GCUAACAUUGACAUUGGUGC 20 2193 myoC-2063 - UUGGUGCCUGAGAUGCAAGA 20 2194 myoC-2064 - CUGAGAUGCAAGACUGAAAU 20 2195 myoC-2065 - AUACACAGUUGUUUUAAAGC 20 2196 myoC-2066 - UACACAGUUGU UUUAAAGCU 20 2197 myoC-2067 - CAGU UGUUUUAAAGCUAGGG 20 2198 myoC-2068 - GUUGUUUUAAAGCUAGGGGU 20 2199 myoC-2069 - UUGUUUUAAAGCUAGGGGUG 20 2200 myoC-2070 - UGUUUUAAAGCUAGGGGUGA 20 2201 myoC-2071 - GUUUUAAAGCUAGGGGUGAG 20 2202 myoC-2072 - UUUUAAAGCUAGGGGUGAGG 20 2203 myoC-2073 - U UUAAAGCUAGGGGUGAGGG 20 2204 myoC-2074 - GGGGAAAUCUGCCGCU UCUA 20 2205 myoC-1210 - GGGAAAUCUGCCGCUUCUAU 20 1510 myoC-2076 - CU UCUAUAGGAAUGCUCUCC 20 2206 myoC-1211 - UUCUAUAGGAAUGCUCUCCC 20 1511 myoC-2078 - AUGCUCUCCCUGGAGCCUGG 20 2207 myoC-2079 - UCUGUCCCUGCUACGUCUUA 20 2208 myoC-2080 - CUACGUCU UAAAGGACU UGU 20 2209 myoC-2081 - UGGCACAGUGCAGGU UCUCA 20 2210 myoC-2082 - GCAGGUUCUCAAUGAGUUUG 20 2211 myoC-2083 - GU UCUCAAUGAGU UUGCAGA 20 2212 myoC-2084 - UCAAUGAGU UUGCAGAGUGA 20 2213 myoC-833 - CAAUGAGUU UGCAGAGUGAA 20 1188 myoC-2086 - GAGUGAAUGGAAAUAUAAAC 20 2214 myoC-2087 - AAACUAGAAAUAUAUCCUUG 20 2215 myoC-2088 - GUGUGUGUGUGUAAAACCAG 20 2216 myoC-836 - UGUGUGUGUGUAAAACCAGG 20 1218 myoC-2090 - UGUAAAACCAGGUGGAGAUA 20 2217 myoC-837 - G U AAAACCAGG UGGAGAUAU 20 994 myoC-2092 - UGGAGAUAUAGGAACUAUUA 20 2218 myoC-838 - GGAGAUAUAGGAACUAUUAU 20 991 myoC-2094 - AUAGGAACUAUUAUUGGGGU 20 2219 myoC-2095 - UUGGGGUAUGGGUGCAUAAA 20 2220 myoC-843 - UGGGGUAUGGGUGCAUAAAU 20 1214 myoC-2097 - AU UGGGAUGUUCUU UUUAAA 20 2221 myoC-2098 - AAGAAACUCCAAACAGACUU 20 2222 myoC-845 - AG AAACUCCAAACAG ACU UC 20 1179 myoC-2100 - CU UCUGGAAGGU UAUUUUCU 20 2223 myoC-2101 - CUAAGAAUCUUGCUGGCAGC 20 2224 myoC-2102 - GGCCACCUCUGUCUUCCCCC 20 2225 myoC-2103 - CACCUCUGUCUUCCCCCAUG 20 2226 myoC-2104 - CCCAGUAUAUAUAAACCUCU 20 2227 myoC-853 - CCAGUAUAUAUAAACCUCUC 20 1197 myoC-2106 - UAUAUAAACCUCUCUGGAGC 20 2228 myoC-2107 - AACCUCUCUGGAGCUCGGGC 20 2229 myoC-2108 - CCAGGCACCUCUCAGCACAG 20 2230 myoC-2109 - CUCAGCACAGCAGAGCU UUC 20 2231 myoC-2110 - CAGCACAGCAGAGCUU UCCA 20 2232 myoC-2111 - AGCACAGCAGAGCUUUCCAG 20 2233 myoC-749 + CUGGAGAGGAAACCUCUGCC 20 1110 myoC-748 + GCUGGAGAGGAAACCUCUGC 20 1010 myoC-2114 + AGCUGGAGAGGAAACCUCUG 20 2234 myoC-747 + CAGGGCUCCCCCAGCUGGAG 20 1099 myoC-2116 + GCAGGGCUCCCCCAGCUGGA 20 2235 myoC-2117 + UUGCAGGGCUCCCCCAGCUG 20 2236 myoC-746 + GCU UGCAGGGCUCCCCCAGC 20 1012 myoC-2119 + UGCU UGCAGGGCUCCCCCAG 20 2237 myoC-2120 + CCCAGGACCCCGGGUGCU UG 20 2238 myoC-2121 + UGCUCAGGACACCCAGGACC 20 2239 myoC-2122 + GGCAGGUUGCUCAGGACACC 20 2240 myoC-2123 + GCACGGGCUGGCAGGU UGCU 20 2241 myoC-2124 + AUAACAAAACAACCAGUGGC 20 2242 myoC-2125 + UAGAAAGCAACAGGUCCCUA 20 2243 myoC-2126 + A A U AG A A AG C A AC AG G U CCC 20 2244 myoC-2127 + AUGAACGAGUCACACAGAAA 20 2245 myoC-2128 + GGAUGAAUGAACGAGUCACA 20 2246 myoC-2129 + AUGAAUGCCUGGAUGAAUGA 20 2247 myoC-2130 + GUCAAUGAAUGCCUGGAUGA 20 2248 myoC-2131 + AAUUGUCAAUGAAUGCCUGG 20 2249 myoC-2132 + AAUAAAUUGUCAAUGAAUGC 20 2250 myoC-2133 + AAGUACUCAAUAAAUUGUCA 20 2251 myoC-2134 + AACUGUCACCUCCACGAAGG 20 2252 myoC-2135 + CAUGAGAAACUGUCACCUCC 20 2253 myoC-2136 + U UCUUCUGCACGUCUUCCAU 20 2254 myoC-2137 + U UUUCU UCUGCACGUCUUCC 20 2255 myoC-2138 + UUAU UUCCUU UCUUUCAGCA 20 2256 myoC-721 + CUAGGGAGGUGGCCUUGUUA 20 1106 myoC-2140 + GCUAGGGAGGUGGCCU UGUU 20 2257 myoC-718 + GGAGGCAGCAGGGGGCGCUA 20 1015 myoC-717 + UGGAGGCAGCAGGGGGCGCU 20 1120 myoC-2143 + AUGGAGGCAGCAGGGGGCGC 20 2258 myoC-714 + CGGGCACGAUGGAGGCAGCA 20 1105 myoC-713 + CCGGGCACGAUGGAGGCAGC 20 1102 myoC-2146 + UCCGGGCACGAUGGAGGCAG 20 2259 myoC-711 + UUGGGGGCCUCCGGGCACGA 20 1123 myoC-2148 + CU UGGGGGCCUCCGGGCACG 20 2260 myoC-2149 + AGACUCGGGCU UGGGGGCCU 20 2261 myoC-706 + GGCUUGGAAGACUCGGGCUU 20 978 myoC-705 + AGGCU UGGAAGACUCGGGCU 20 1091 myoC-2152 + GAGGCUUGGAAGACUCGGGC 20 2262 myoC-2153 + GAGGAGGAGGCU UGGAAGAC 20 2263 myoC-702 + GACUGAUGGAGGAGGAGGCU 20 1004 myoC-2155 + UGACUGAUGGAGGAGGAGGC 20 2264 myoC-700 + AGCGCUGUGACUGAUGGAGG 20 1088 myoC-2157 + CAGCGCUGUGACUGAUGGAG 20 2265 myoC-699 + UGCAGCGCUGUGACUGAUGG 20 1118 myoC-2159 + CUGCAGCGCUGUGACUGAUG 20 2266 myoC-698 + AGCUGCAGCGCUGUGACUGA 20 1089 myoC-2161 + CAGCUGCAGCGCUGUGACUG 20 2267 myoC-2162 + ACCAGGACGAUUCACGGGAA 20 2268 myoC-2163 + GAUGCACCAGGACGAUUCAC 20 2269 myoC-2164 + AG AUGCACCAGG ACG AU UCA 20 2270 myoC-2165 + CAG AUGCACCAGG ACG AU UC 20 2271 myoC-2166 + AGUCUCCAGCUCAGAUGCAC 20 2272 myoC-1115 + CU UUCUGGAGCCUGGAGCCA 20 1415 myoC-2168 + CCUU UCUGGAGCCUGGAGCC 20 2273 myoC-1114 + UCCAUU UCCUUUCUGGAGCC 20 1414 myoC-2170 + CUCCAUUUCCUU UCUGGAGC 20 2274 myoC-1113 + UUCCCUCUCCAU UUCCU UUC 20 1413 myoC-2172 + UUUCCCUCUCCAUUUCCUUU 20 2275 myoC-1112 + UGGAGGCCCCUU UCCCUCUG 20 1412 myoC-2174 + GUGGAGGCCCCUUUCCCUCU 20 2276 myoC-2175 + ACGUGGAGGCCCCUUUCCCU 20 2277 myoC-1110 + UCCUGGAAUUCUCCUGGACG 20 1410 myoC-2177 + CUCCUGGAAU UCUCCUGGAC 20 2278 myoC-2178 + CCCCACCUCCUGGAAUUCUC 20 2279 myoC-1108 + UCCCUGCAGUCCCCACCUCC 20 1408 myoC-2180 + CUCCCUGCAGUCCCCACCUC 20 2280 myoC-2181 + CCGUGAACAACACUGAACAU 20 2281 myoC-2182 + UCCCAGCCCCGUGAACAACA 20 2282 myoC-2183 + AACGG A A A AC UCCCAGCCCC 20 2283 myoC-1105 + A A AAG G C U C AC AG G A AG C A A 20 1405 myoC-2185 + A A AA AG G C U C AC AG G A AG C A 20 2284 myoC-1104 + G A A AAG A U A A A A AG G C U C AC 20 1404 myoC-2187 + AGAAAAGAUAAAAAGGCUCA 20 2285 myoC-2188 + GACU UCUUCUCCUCCAAGCA 20 2286 myoC-2189 + UAGACUUCUUCUCCUCCAAG 20 2287 myoC-2190 + UUAUGAAACUGCAUCCCUUC 20 2288 myoC-2191 + GAAUUUUAACAGCUGACUUU 20 2289 myoC-1102 + AGGAAAACCCAUGCACACCC 20 1402 myoC-2193 + AAGGAAAACCCAUGCACACC 20 2290 myoC-1101 + U U AAAU AAAGGCCU UCG UG A 20 1401 myoC-2195 + AUUAAAUAAAGGCCUUCGUG 20 2291 myoC-2196 + CCCAUU AAAU AAAGGCCU UC 20 2292 myoC-2197 + GUGAAUUAACGGCCUAGGAA 20 2293 myoC-1099 + CU UCCGUGAAUUAACGGCCU 20 1399 myoC-2199 + UCUUCCGUGAAUUAACGGCC 20 2294 myoC-2200 + AGACUCCAGUCACUUCU UCC 20 2295 myoC-2201 + UAGUUGCCCAGAAGACAUGA 20 2296 myoC-2202 + UGAGUAGU UGCCCAGAAGAC 20 2297 myoC-2203 + CACAGGGCUGAGUAGU UGCC 20 2298 myoC-2204 + AAG CCA AG UCCACCACAGGG 20 2299 myoC-2205 + UGCAUAAGCCAAGUCCACCA 20 2300 myoC-2206 + UGGCAGAACCAGAAAGAAAA 20 2301 myoC-2207 + CAACCAAUGGCAGAACCAGA 20 2302 myoC-2208 + C AG CC A ACC A A U G G C AG A AC 20 2303 myoC-2209 + GUCGCACAGCCAACCAAUGG 20 2304 myoC-2210 + AAGACUAUGGCCCAGGGAAG 20 2305 myoC-1092 + AGAAGACUAUGGCCCAGGGA 20 1392 myoC-2212 + GAGAAGACUAUGGCCCAGGG 20 2306 myoC-1091 + GCAGAGAAGACUAUGGCCCA 20 1391 myoC-1090 + AGCAGAGAAGACUAUGGCCC 20 1390 myoC-2215 + UAGCAGAGAAGACUAUGGCC 20 2307 myoC-2216 + CUGCAAGGGUCUUUAUAGCA 20 2308 myoC-2217 + AGCUGCAAGGGUCUUUAUAG 20 2309 myoC-2218 + UCACAGAACACGAGAGCUGC 20 2310 myoC-2219 + GGGAAGUGUUCACAGAACAC 20 2311 myoC-2220 + C AG G G A AG U G U U C AC AG A AC 20 2312 myoC-2221 + GAAUCACAGGGAAGUGU UCA 20 2313 myoC-1086 + CCCCCUCACAGAGAAUCACA 20 1386 myoC-1085 + CCCCCCUCACAGAGAAUCAC 20 1385 myoC-2224 + UCCCCCCUCACAGAGAAUCA 20 2314 myoC-2225 + UCUCAACAUCCCCCCUCACA 20 2315 myoC-2226 + CCUCUCAACAUCCCCCCUCA 20 2316 myoC-1083 + ACGUGAUCAGUGAGGACUGA 20 1383 myoC-2228 + GACGUGAUCAGUGAGGACUG 20 2317 myoC-2229 + UGGAGUCUGACGUGAUCAGU 20 2318 myoC-2230 + CCUGGAGUCUGACGUGAUCA 20 2319 myoC-1081 + AGCAUUGUGGCUCUCGGUCC 20 1381 myoC-2232 + AAGCAUUGUGGCUCUCGGUC 20 2320 myoC-2233 + GUUGGGUUCAU UGAGCUUUC 20 2321 myoC-2234 + AAAUGUGGCUGUUGGG UUCA 20 2322 myoC-2235 + AGGGAAGGAAAAUGUGGCUG 20 2323 myoC-1075 + CCAUUGUCUAUGCUUAGGGA 20 1375 myoC-2237 + GCCAU UGUCUAUGCU UAGGG 20 2324 myoC-1074 + AAUGCCAUUGUCUAUGCUUA 20 1374 myoC-1073 + AAAUGCCAUUGUCUAUGCUU 20 1373 myoC-2240 + CAAAUGCCAUUGUCUAUGCU 20 2325 myoC-2241 + CACUUGCUCUGGCCCAGUUU 20 2326 myoC-2242 + UGCGUGGGGUGCUGGUCAGG 20 2327 myoC-2243 + GAGCUGCGUGGGGUGCUGGU 20 2328 myoC-1199 + GCAG UCACUGCUGAGCUGCG 20 1499 myoC-2245 + AGCAGUCACUGCUGAGCUGC 20 2329 myoC-2246 + CGUGCUGUCAGCAGUCACUG 20 2330 myoC-2247 + UCAAU UCCCACUGCCCUUGA 20 2331 myoC-2248 + GUGGUCAAUUCCCACUGCCC 20 2332 myoC-2249 + CUCCUAGAACCCAGGAUCAC 20 2333 myoC-2250 + UAGCCCUGCCUCCUAGAACC 20 2334 myoC-2251 + CACAAUAUAGCCCUGCCUCC 20 2335 myoC-2252 + AUCAGGUCUCCCGACU UCCC 20 2336 myoC-2253 + GUAAAGGAAAAAUAUAGUAU 20 2337 myoC-1193 + CAGAAUUACUCAGCU UGUAA 20 1493 myoC-2255 + UCAGAAU UACUCAGCUUGUA 20 2338 myoC-2256 + UUACUACCUUGUGACU UGCU 20 2339 myoC-2257 + G AAAAAG AG U U CCUAAUAAG 20 2340 myoC-1192 + G AG A A A A AG AGUUCCUAAUA 20 1492 myoC-2259 + AGAGAAAAAGAGU UCCUAAU 20 2341 myoC-2260 + C U G C U A AC U CC AC AG AG AAA 20 2342 myoC-2261 + CU UGUGCUGCUAACUCCACA 20 2343 myoC-2262 + CCCUUGUGCUGCUAACUCCA 20 2344 myoC-1190 + UUUCUUCCUGUUAAAAGAAA 20 1490 myoC-2264 + UUUUCU UCCUGUUAAAAGAA 20 2345 myoC-2265 + GAAUGUUUUCU UCCUGU UAA 20 2346 myoC-1189 + AUCUGUUUGGCUU UACUCU U 20 1489 myoC-2267 + AAUCUGU UUGGCUUUACUCU 20 2347 myoC-2268 + AUAGUCAGCAAGACCUAGGC 20 2348 myoC-2269 + GAAUCAGAUAGUAAACAUCG 20 2349 myoC-2270 + AAGGGUACUAGUCUCAUUUU 20 2350 myoC-2271 + UGUUUGUUUACAGCUGACCA 20 2351 myoC-2272 + UGAACUUGAGACAUUUACAA 20 2352 myoC-2273 + U UCUGCAGUUAAGCCUGAAC 20 2353 myoC-2274 + GAU UGGU UCUGCAGUUAAGC 20 2354 myoC-2275 + GCAGACUCACCUCCAGAGUG 20 2355 myoC-1181 + UGGCAGACUCACCUCCAGAG 20 1481 myoC-2277 + CUGGCAGACUCACCUCCAGA 20 2356 myoC-2278 + UGCCCUGGCAGACUCACCUC 20 2357 myoC-2279 + CAACAACAGUGUCAAUACUU 20 2358 myoC-2280 + ACUUGAAAUAAUGAU UGCCU 20 2359 myoC-2281 + CAGAAGUAACU UUAAGCCAC 20 2360 myoC-2282 + A A U AAA U A U ACC A A A AC U G U 20 2361 myoC-2283 + U U U AC A U U A A U A A ACCC A A A 20 2362 myoC-2284 + GCUU UACAUUAAUAAACCCA 20 2363 myoC-2285 + CAUUCAAAUUCACAGGCUU U 20 2364 myoC-2286 + AAUAAAAUGUUAAAU UUAGU 20 2365 myoC-1173 + GUUUAUGGCUCUAUUCGCAA 20 1473 myoC-2288 + AGU UUAUGGCUCUAUUCGCA 20 2366 myoC-2289 + CAGGUACUGUUAU UACCACU 20 2367 myoC-2290 + GGUCUAAUUUCAAAGUAGUU 20 2368 myoC-1228 + UGUUAAAAACAAGAUCCAGC 20 1528 myoC-2292 + AUGUUAAAAACAAGAUCCAG 20 2369 myoC-2293 + U AC A A AG G A A AC A A A U G A U A 20 2370 myoC-1227 + AU AU AAAAU AU AG AU UACAA 20 1527 myoC-2295 + UAUAUAAAAUAUAGAUUACA 20 2371 myoC-2296 + GAAAUCUGGGGAACUCU UCU 20 2372 myoC-1226 + AACCUCAUUGGUGAAAUCUG 20 1526 myoC-1225 + GAACCUCAUUGG UGAAAUCU 20 1525 myoC-1224 + AGAACCUCAUUGGUGAAAUC 20 1524 myoC-2300 + AAGAACCUCAUUGGUGAAAU 20 2373 myoC-2301 + GCAUGCCAAGAACCUCAUUG 20 2374 myoC-2302 + ACUCUGUGUGUGUGCAUGCC 20 2375 myoC-2303 + AAACAACUGUGUAUCU UUGG 20 2376 myoC-1221 + UAAAACAACUGUGUAUCU UU 20 1521 myoC-1220 + U UAAAACAACUGUGUAUCUU 20 1520 myoC-2306 + U UUAAAACAACUGUGUAUCU 20 2377 myoC-2307 + CUCCAGGGAGAGCAUUCCUA 20 2378 myoC-2308 + GCACCCUACCAGGCUCCAGG 20 2379 myoC-1218 + CAGCACCCUACCAGGCUCCA 20 1518 myoC-1217 + ACAGCACCCUACCAGGCUCC 20 1517 myoC-2311 + GACAGCACCCUACCAGGCUC 20 2380 myoC-2312 + AUAACAGCCAGCCAGAACAC 20 2381 myoC-2313 + AGAGAAAAAUAACAGCCAGC 20 2382 myoC-2314 + U UUAAGACGUAGCAGGGACA 20 2383 myoC-2315 + CCUU UAAGACGUAGCAGGGA 20 2384 myoC-893 + CAAGUCCUUUAAGACGUAGC 20 1187 myoC-2317 + ACAAG U CCU U UAAGACG U AG 20 2385 myoC-892 + CCAGGCACUAUGCUAGGAAC 20 1196 myoC-2319 + GCCAGGCACUAUGCUAGGAA 20 2386 myoC-891 + ACUGUGCCAGGCACUAUGCU 20 1178 myoC-2321 + CACUGUGCCAGGCACUAUGC 20 2387 myoC-2322 + AUUCACUCUGCAAACUCAUU 20 2388 myoC-2323 + CCAUUCACUCUGCAAACUCA 20 2389 myoC-2324 + ACUGGUGUGCUGAUUUCAAC 20 2390 myoC-2325 + AC ACG U AC AC AC AC U U AC AC 20 2391 myoC-2326 + GUUUGGAGUU UCUUU UUAAA 20 2392 myoC-885 + UAACCUUCCAGAAGUCUGUU 20 1208 myoC-2328 + AUAACCUUCCAGAAGUCUGU 20 2393 myoC-2329 + AUUCU UAGAAAAUAACCUUC 20 2394 myoC-2330 + CACGCUGCCAGCAAGAU UCU 20 2395 myoC-882 + CUGGGUGGGGCUGUGCACAG 20 1205 myoC-881 + GCUGGGUGGGGCUGUGCACA 20 1050 myoC-880 + GGCUGGGUGGGGCUGUGCAC 20 1051 myoC-2334 + AGGCUGGGUGGGGCUGUGCA 20 2396 myoC-877 + GGUGGCCACGUGAGGCUGGG 20 1053 myoC-2336 + AGGUGGCCACGUGAGGCUGG 20 2397 myoC-2337 + ACAGAGGUGGCCACG UGAGG 20 2398 myoC-2338 + GGGAAGACAGAGGUGGCCAC 20 2399 myoC-2339 + CAGCCCU UCAUGGGGG AAG A 20 2400 myoC-871 + GGGGAGCCAGCCCU UCAUGG 20 992 myoC-870 + UGGGGAGCCAGCCCUUCAUG 20 1213 myoC-869 + CUGGGGAGCCAGCCCUUCAU 20 1204 myoC-868 + ACUGGGGAGCCAGCCCU UCA 20 1177 myoC-2344 + UACUGGGGAGCCAGCCCUUC 20 2401 myoC-867 + AGAGAGGUUUAUAUAUACUG 20 1180 myoC-866 + CAGAGAGGU UUAUAUAUACU 20 1191 myoC-865 + CCAGAGAGGU UUAUAUAUAC 20 1195 myoC-2348 + UCCAGAGAGGUUUAUAUAUA 20 2402 myoC-2349 + UGGCUCAUGCCCGAGCUCCA 20 2403 myoC-2350 + GCUGGCUCAUGCCCGAGCUC 20 2404 myoC-2351 + GUGGCCU UGCUGGCUCAUGC 20 2405 myoC-2352 + CUGUGCUGAGAGGUGCCUGG 20 2406 myoC-2353 + UCUGCUGUGCUGAGAGGUGC 20 2407 myoC-2354 + CUGGAAAGCUCUGCUGUGCU 20 2408 myoC-2355 + CUCUGGAAAGCUCUGCUGUG 20 2409 myoC-2356 + AGGCUUGGUGAGGCUUCCUC 20 2410 myoC-2357 + GAGGCUUGGUGAGGCUUCCU 20 2411 myoC-2358 - AGAGGUUUCCUCUCCAG 17 2412 myoC-752 - GAGGUUUCCUCUCCAGC 17 1026 myoC-753 - AGGUU UCCUCUCCAGCU 17 1142 myoC-754 - GGUU UCCUCUCCAGCUG 17 1045 myoC-755 - GUU UCCUCUCCAGCUGG 17 1047 myoC-2363 - GGGAGCCCUGCAAGCAC 17 2413 myoC-756 - GGAGCCCUGCAAGCACC 17 1035 myoC-2365 - UGCAAGCACCCGGGGUC 17 2414 myoC-2366 - CCGGGGUCCUGGGUGUC 17 2415 myoC-2367 - GU UUUGUUAUCACUCUC 17 2416 myoC-762 - UUUUGUUAUCACUCUCU 17 1171 myoC-2369 - CAUUCAUUGACAAUUUA 17 2417 myoC-2370 - U UAUAUCUGCCAGACAC 17 2418 myoC-2371 - ACACCAG AG ACAAAAU G 17 2419 myoC-2372 - GUCACUGCCCUACCUUC 17 2420 myoC-766 - UCACUGCCCUACCUUCG 17 1160 myoC-2374 - GGAGGUGACAGUUUCUC 17 2421 myoC-768 - GAGGUGACAGUU UCUCA 17 1025 myoC-2376 - U UCUCAUGGAAGACGUG 17 2422 myoC-2377 - UCAUGGAAGACGUGCAG 17 2423 myoC-2378 - CCAACUUAAACCCAGUG 17 2424 myoC-2379 - CU UAAACCCAGUGCUGA 17 2425 myoC-2380 - AACCCAGUGCUGAAAGA 17 2426 myoC-769 - ACCCAGUGCUGAAAGAA 17 1130 myoC-2382 - AG G AAA U A A AC ACC A U C 17 2427 myoC-2383 - A A AU AAAC ACCAU CU U G 17 2428 myoC-2384 - UGCUGCCUCCAUCGUGC 17 2429 myoC-771 - GCUGCCUCCAUCGUGCC 17 1030 myoC-2386 - CCCGGAGGCCCCCAAGC 17 2430 myoC-2387 - GGCCUGCCUCGCUUCCC 17 2431 myoC-2388 - GAAUCGUCCUGGUGCAU 17 2432 myoC-2389 - GUCCUGGUGCAUCUGAG 17 2433 myoC-2390 - UCCUGGUGCAUCUGAGC 17 2434 myoC-2391 - UCCU UGGCUCCAGGCUC 17 2435 myoC-2392 - UGGCUCCAGGCUCCAGA 17 2436 myoC-1233 - GGCUCCAGGCUCCAGAA 17 1533 myoC-2394 - CAGGCUCCAGAAAGGAA 17 2437 myoC-1234 - AGGCUCCAGAAAGGAAA 17 1534 myoC-2396 - G CU CC AG A A AG G A A A U G 17 2438 myoC-2397 - U CC AG A A AG G A A A U G G A 17 2439 myoC-1235 - CCAGAAAGGAAAUGGAG 17 1535 myoC-1236 - CAGAAAGGAAAUGGAGA 17 1536 myoC-2400 - AGAGGGAAACUAGUCUA 17 2440 myoC-1237 - GAGGGAAACUAGUCUAA 17 1537 myoC-2402 - GGGAAACUAGUCUAACG 17 2441 myoC-2403 - CUAGUCUAACGGAGAAU 17 2442 myoC-1238 - UAGUCUAACGGAGAAUC 17 1538 myoC-2405 - GUCUAACGGAGAAUCUG 17 2443 myoC-1239 - UCUAACGGAGAAUCUGG 17 1539 myoC-1240 - CUAACGGAGAAUCUGGA 17 1540 myoC-2408 - AGGGGACAGUGUUUCCU 17 2444 myoC-2409 - GGGACAGUGUUUCCUCA 17 2445 myoC-1242 - GGACAGUGUU UCCUCAG 17 1542 myoC-1243 - GACAGUG UUUCCUCAGA 17 1543 myoC-2412 - GUGU UUCCUCAGAGGGA 17 2446 myoC-1244 - UGUUUCCUCAGAGGGAA 17 1544 myoC-2414 - AAAGGGGCCUCCACGUC 17 2447 myoC-1247 - AAGGGGCCUCCACGUCC 17 1547 myoC-2416 - GGGGCCUCCACGUCCAG 17 2448 myoC-2417 - CACGUCCAGGAGAAUUC 17 2449 myoC-1248 - ACGUCCAGGAGAAUUCC 17 1548 myoC-2419 - CAGGAGAAUUCCAGGAG 17 2450 myoC-1250 - AGGAGAAUUCCAGGAGG 17 1550 myoC-1251 - GGAGAAUUCCAGGAGGU 17 1551 myoC-2422 - CCAGGAGGUGGGGACUG 17 2451 myoC-1253 - CAGGAGGUGGGGACUGC 17 1553 myoC-1254 - AGGAGGUGGGGACUGCA 17 1554 myoC-2425 - GGUGGGGACUGCAGGGA 17 2452 myoC-1255 - GUGGGGACUGCAGGGAG 17 1555 myoC-1256 - UGGGGACUGCAGGGAGU 17 1556 myoC-2428 - UGCAGGGAGUGGGGACG 17 2453 myoC-1258 - GCAGGGAGUGGGGACGC 17 1558 myoC-2430 - GAGUGGGGACGCUGGGG 17 2454 myoC-2431 - GGGGACGCUGGGGCUGA 17 2455 myoC-2432 - CUGGGGCUGAGCGGGUG 17 2456 myoC-2433 - GAGCGGGUGCUGAAAGG 17 2457 myoC-1264 - AGCGGGUGCUGAAAGGC 17 1564 myoC-2435 - U G CU G A A AG G C AG G A AG 17 2458 myoC-2436 - A A AG G C AG G A AG G U G A A 17 2459 myoC-2437 - AGGUGAAAAGGGCAAGG 17 2460 myoC-2438 - GAUGU UCAGUGUUGUUC 17 2461 myoC-1269 - AUGUUCAGUGUUGU UCA 17 1569 myoC-2440 - CAGUGUUGUUCACGGGG 17 2462 myoC-1272 - AGUGU UGUUCACGGGGC 17 1572 myoC-1273 - GUGU UGUUCACGGGGCU 17 1573 myoC-2443 - GU UUUCCGUUGCU UCCU 17 2463 myoC-2444 - U UUUAUCUU UUCUCUGC 17 2464 myoC-1274 - UUUAUCUUU UCUCUGCU 17 1574 myoC-2446 - UAUCU UUUCUCUGCUUG 17 2465 myoC-1275 - AUCUU UUCUCUGCUUGG 17 1575 myoC-2448 - CU UUUCUCUGCUUGGAG 17 2466 myoC-2449 - U UCUCUGCU UGGAGGAG 17 2467 myoC-2450 - GAGAAGAAGUCUAU UUC 17 2468 myoC-2451 - AAGAAGUCUAUUUCAUG 17 2469 myoC-1276 - AGAAGUCUAU UUCAUGA 17 1576 myoC-2453 - GUCAGCUGU UAAAAUUC 17 2470 myoC-2454 - AAAAUUCCAGGGUGUGC 17 2471 myoC-2455 - UGCAUGGGUUU UCCU UC 17 2472 myoC-2456 - ACGAAGGCCUUUAU UUA 17 2473 myoC-1283 - CGAAGGCCU UUAUUUAA 17 1583 myoC-1284 - GAAGGCCU UUAUU UAAU 17 1584 myoC-2459 - U UUAUUUAAUGGGAAUA 17 2474 myoC-1285 - UUAU UUAAUGGGAAUAU 17 1585 myoC-2461 - UAAUGGGAAUAUAGGAA 17 2475 myoC-2462 - UCCUAGGCCGUUAAUUC 17 2476 myoC-1287 - CCUAGGCCGUUAAUUCA 17 1587 myoC-2464 - AGGCCGUUAAUUCACGG 17 2477 myoC-2465 - AU UCACGGAAGAAGUGA 17 2478 myoC-1288 - UUCACGGAAGAAGUGAC 17 1588 myoC-2467 - CU UUUCU UUCAUGUCUU 17 2479 myoC-2468 - AACUACUCAGCCCUGUG 17 2480 myoC-2469 - UGGCUUAUGCAAGACGG 17 2481 myoC-2470 - CAAGACGGUCGAAAACC 17 2482 myoC-1295 - AAGACGGUCGAAAACCU 17 1595 myoC-2472 - GUCGAAAACCU UGGAAU 17 2483 myoC-1296 - UCGAAAACCUUGGAAUC 17 1596 myoC-2474 - UGGU UGGCUGUGCGACC 17 2484 myoC-2475 - CAAGUGUCUCUCCUUCC 17 2485 myoC-2476 - UGCAGCUCUCGUGUUCU 17 2486 myoC-2477 - CU UCCCUGUGAU UCUCU 17 2487 myoC-2478 - UCCCUGUGAUUCUCUGU 17 2488 myoC-1305 - CCCUGUGAUUCUCUGUG 17 1605 myoC-1306 - CCUG UGAUUCUCUGUGA 17 1606 myoC-1307 - CUGUGAUUCUCUGUGAG 17 1607 myoC-1308 - UGUGAUUCUCUGUGAGG 17 1608 myoC-2483 - CUCUGUGAGGGGGGAUG 17 2489 myoC-2484 - CUGUGAGGGGGGAUGU U 17 2490 myoC-2485 - GUGAGGGGGGAUGUUGA 17 2491 myoC-1310 - UGAGGGGGGAUGUUGAG 17 1610 myoC-1311 - GAGGGGGGAUGUUGAGA 17 1611 myoC-1312 - AGGGGGGAUGUUGAGAG 17 1612 myoC-2489 - GGGGAUGUUGAGAGGGG 17 2492 myoC-1313 - GGGAUGUUGAGAGGGGA 17 1613 myoC-2491 - UUGAGAGGGGAAGGAGG 17 2493 myoC-2492 - AGGGGAAGGAGGCAGAG 17 2494 myoC-1315 - GGGGAAGGAGGCAGAGC 17 1615 myoC-2494 - AGGCAGAGCUGGAGCAG 17 2495 myoC-2495 - CUGGAGCAGCUGAGCCA 17 2496 myoC-1316 - UGGAGCAGCUGAGCCAC 17 1616 myoC-1317 - GGAGCAGCUGAGCCACA 17 1617 myoC-1318 - GAGCAGCUGAGCCACAG 17 1618 myoC-2499 - GCUGAGCCACAGGGGAG 17 2497 myoC-1320 - CUGAGCCACAGGGGAGG 17 1620 myoC-2501 - GAGCCACAGGGGAGGUG 17 2498 myoC-1321 - AGCCACAGGGGAGGUGG 17 1621 myoC-1322 - GCCACAGGGGAGGUGGA 17 1622 myoC-1323 - CCACAGGGGAGGUGGAG 17 1623 myoC-2505 - GGGGAGGUGGAGGGGGA 17 2499 myoC-1325 - GGGAGGUGGAGGGGGAC 17 1625 myoC-2507 - GGGGACAGGAAGGCAGG 17 2500 myoC-2508 - AGGAAGGCAGGCAGAAG 17 2501 myoC-2509 - CUGAUCACGUCAGACUC 17 2502 myoC-2510 - CACGUCAGACUCCAGGA 17 2503 myoC-2511 - CGUCAGACUCCAGGACC 17 2504 myoC-2512 - CG AG AG CC AC A A U G C U U 17 2505 myoC-1331 - GAGAGCCACAAUGCUUC 17 1631 myoC-2514 - UGCU UCAGGAAAGCUCA 17 2506 myoC-2515 - AUUUGCCAAUAACCAAA 17 2507 myoC-2516 - A A U A ACC A A A A AG A A U G 17 2508 myoC-2517 - UGCCUGGCAUU C A A A A A 17 2509 myoC-2518 - GCAU UCAAAAACUGGGC 17 2510 myoC-2519 - AAACUGGGCCAGAGCAA 17 2511 myoC-1338 - AACUGGGCCAGAGCAAG 17 1638 myoC-2521 - GAGCAAGUGGAAAAUGC 17 2512 myoC-2522 - CAGUGACUGCUGACAGC 17 2513 myoC-1387 - AGUGACUGCUGACAGCA 17 1687 myoC-2524 - CGGAGUGACCUGCAGCG 17 2514 myoC-1388 - GGAGUGACCUGCAGCGC 17 1688 myoC-1389 - GAGUGACCUGCAGCGCA 17 1689 myoC-1390 - AGUGACCUGCAGCGCAG 17 1690 myoC-2528 - UGACCUGCAGCGCAGGG 17 2515 myoC-1391 - GACCUGCAGCGCAGGGG 17 1691 myoC-2530 - CCUGCAGCGCAGGGGAG 17 2516 myoC-2531 - GCAGCGCAGGGGAGGAG 17 2517 myoC-2532 - CAGGGGAGGAGAAGAAA 17 2518 myoC-2533 - GGGGAGGAGAAGAAAAA 17 2519 myoC-2534 - GGAGGAGAAGAAAAAGA 17 2520 myoC-1392 - GAGGAGAAGAAAAAGAG 17 1692 myoC-2536 - AAAGAGAGGGAUAGUGU 17 2521 myoC-2537 - AGGGAUAGUGUAUGAGC 17 2522 myoC-2538 - GAAAGACAGAUUCAUUC 17 2523 myoC-2539 - AGAUUCAUUCAAGGGCA 17 2524 myoC-1396 - G AU UCAU UCAAGGGCAG 17 1696 myoC-1397 - AU UCAUUCAAGGGCAGU 17 1697 myoC-2542 - GCAGUGGGAAUUGACCA 17 2525 myoC-1398 - CAGUGGGAAUUGACCAC 17 1698 myoC-2544 - U UAUAGUCCACGUGAUC 17 2526 myoC-2545 - CACGUGAUCCUGGGUUC 17 2527 myoC-1402 - ACGUGAUCCUGGGUUCU 17 1702 myoC-2547 - UCCUGGGU UCUAGGAGG 17 2528 myoC-2548 - GGAGGCAGGGCUAUAU U 17 2529 myoC-1406 - GAGGCAGGGCUAUAUUG 17 1706 myoC-1407 - AGGCAGGGCUAUAUUGU 17 1707 myoC-1408 - GGCAGGGCUAUAUUGUG 17 1708 myoC-1409 - GCAGGGCUAUAUUGUGG 17 1709 myoC-1410 - CAGGGCUAUAUUGUGGG 17 1710 myoC-2554 - G G G G A A A A A A U C AG U U C 17 2530 myoC-1411 - G G G A A A A A A U C AG U U C A 17 1711 myoC-1412 - G G A AAAAA U CAG U U CA A 17 1712 myoC-2557 - A A U C AG U U C A AG G G A AG 17 2531 myoC-1413 - A U C AG U U C A AG G G A AG U 17 1713 myoC-1414 - UCAGUUCAAGGGAAGUC 17 1714 myoC-2560 - UAUU UUUCCU UUACAAG 17 2532 myoC-2561 - UUACAAGCUGAGUAAU U 17 2533 myoC-2562 - A AG U C AC A AG G U AG U A A 17 2534 myoC-2563 - ACUUAGU UUCUCCUUAU 17 2535 myoC-1417 - CU UAGUUUCUCCU UAU U 17 1717 myoC-2565 - AGGAACUCUUU UUCUCU 17 2536 myoC-1418 - GGAACUCUUUU UCUCUG 17 1718 myoC-2567 - UGUGGAGUUAGCAGCAC 17 2537 myoC-2568 - AAUCCCGUUUCUUUUAA 17 2538 myoC-1421 - AUCCCGUU UCUUU UAAC 17 1721 myoC-2570 - CCGUU UCUU UUAACAGG 17 2539 myoC-2571 - AGGAAGAAAACAUUCCU 17 2540 myoC-2572 - ACUAUAUGAUUGGUUU U 17 2541 myoC-2573 - AUGUUUACUAUCUGAUU 17 2542 myoC-2574 - ACUAUCUGAUUCAGAAA 17 2543 myoC-2575 - AAGUUCAGGCUUAACUG 17 2544 myoC-2576 - U G CAG A ACC A A U C A A A U 17 2545 myoC-2577 - AACCAAUCAAAUAAGAA 17 2546 myoC-2578 - AAUAAGAAUAGAAUCUU 17 2547 myoC-2579 - AACUGUGUUUCUCCACU 17 2548 myoC-1426 - ACUGUGUUUCUCCACUC 17 1726 myoC-2581 - GU UUCUCCACUCUGGAG 17 2549 myoC-2582 - UCUGGAGGUGAGUCUGC 17 2550 myoC-2583 - GAGUCUGCCAGGGCAGU 17 2551 myoC-1430 - AGUCUGCCAGGGCAGU U 17 1730 myoC-2585 - CU UUUUGU UUUUUCUCU 17 2552 myoC-2586 - GGUU UAUUAAUGUAAAG 17 2553 myoC-1438 - GU UUAUUAAUGUAAAGC 17 1738 myoC-2588 - AU U AU U AACCU ACAG U C 17 2554 myoC-2589 - UACAGUCCAGAAAGCCU 17 2555 myoC-2590 - CCAGAAAGCCUGUGAAU 17 2556 myoC-2591 - AAAGCCUGUGAAUUUGA 17 2557 myoC-2592 - AGCCUG UGAAUUUGAAU 17 2558 myoC-1440 - GCCUGUGAAUUUGAAUG 17 1740 myoC-2594 - UAACAU UUUAUUCCAUU 17 2559 myoC-2595 - U UUUAUUCCAUUGCGAA 17 2560 myoC-2596 - GAU UUUGUCAU UACCAA 17 2561 myoC-2597 - U UGCAGAUACGUUG UAA 17 2562 myoC-2598 - UUAUACUCAAAACUACU 17 2563 myoC-2599 - UGAAAUUAGACCUCCUG 17 2564 myoC-2600 - AUCUAUAUUU UAUAUAU 17 2565 myoC-2601 - U AU U UG AAAACAU CU U U 17 2566 myoC-2602 - UUUGAAAACAUCUUUCU 17 2567 myoC-2603 - GAAAACAUCUUUCUGAG 17 2568 myoC-2604 - UUCCCCAGAUUUCACCA 17 2569 myoC-2605 - CU UGGCAUGCACACACA 17 2570 myoC-2606 - AUGCACACACACAGAGU 17 2571 myoC-2607 - CAGAGUAAGAACUGAUU 17 2572 myoC-2608 - AACAUUGACAUUGGUGC 17 2573 myoC-2609 - GUGCCUGAGAUGCAAGA 17 2574 myoC-2610 - AGAUGCAAGACUGAAAU 17 2575 myoC-2611 - C AC AG U U G U U U U A A AG C 17 2576 myoC-2612 - ACAGUUGUUUUAAAGCU 17 2577 myoC-2613 - U UGUUUUAAAGCUAGGG 17 2578 myoC-2614 - GU UUUAAAGCUAGGGGU 17 2579 myoC-2615 - UUUUAAAGCUAGGGGUG 17 2580 myoC-2616 - U UUAAAGCUAGGGGUGA 17 2581 myoC-2617 - U UAAAGCUAGGGGUGAG 17 2582 myoC-2618 - UAAAGCUAGGGGUGAGG 17 2583 myoC-2619 - AAAGCUAGGGG UGAGGG 17 2584 myoC-2620 - GAAAUCUGCCGCU UCUA 17 2585 myoC-1480 - AAAUCUGCCGCUUCUAU 17 1780 myoC-2622 - CUAUAGGAAUGCUCUCC 17 2586 myoC-1481 - UAUAGGAAUGCUCUCCC 17 1781 myoC-2624 - CUCUCCCUGGAGCCUGG 17 2587 myoC-2625 - GUCCCUGCUACGUCU UA 17 2588 myoC-2626 - CGUCUUAAAGGACU UGU 17 2589 myoC-2627 - CACAG UGCAGGU UCUCA 17 2590 myoC-2628 - GGUUCUCAAUGAGU UUG 17 2591 myoC-2629 - CUCAAUGAGUU UGCAGA 17 2592 myoC-2630 - AUGAGUUUGCAGAGUGA 17 2593 myoC-899 - UGAGU UUGCAGAGUGAA 17 1254 myoC-2632 - UGAAUGGAAAUAUAAAC 17 2594 myoC-2633 - CUAGAAAUAUAUCCUUG 17 2595 myoC-2634 - UGUGUGUGUAAAACCAG 17 2596 myoC-902 - GUGUGUGUAAAACCAGG 17 1073 myoC-2636 - AAAACCAGGUGGAGAUA 17 2597 myoC-903 - AAACCAGGUGGAGAUAU 17 1222 myoC-2638 - AGAUAUAGGAACUAUUA 17 2598 myoC-904 - GAUAUAGGAACUAUUAU 17 1058 myoC-2640 - GGAACUAUUAUUGGGGU 17 2599 myoC-2641 - GGGUAUGGGUGCAUAAA 17 2600 myoC-909 - GGUAUGGGUGCAUAAAU 17 1067 myoC-2643 - GGGAUGUUCUU UUUAAA 17 2601 myoC-2644 - AAACUCCAAACAGACUU 17 2602 myoC-911 - AACUCCAAACAGACUUC 17 1225 myoC-2646 - CUGGAAGGUUAUUUUCU 17 2603 myoC-2647 - AGAAUCU UGCUGGCAGC 17 2604 myoC-2648 - CACCUCUGUCUUCCCCC 17 2605 myoC-2649 - CUCUGUCUUCCCCCAUG 17 2606 myoC-2650 - AGUAUAUAUAAACCUCU 17 2607 myoC-919 - GUAUAUAUAAACCUCUC 17 998 myoC-2652 - AUAAACCUCUCUGGAGC 17 2608 myoC-2653 - CUCUCUGGAGCUCGGGC 17 2609 myoC-2654 - GGCACCUCUCAGCACAG 17 2610 myoC-2655 - AGCACAGCAGAGCUUUC 17 2611 myoC-2656 - CAC AG C AG AG C U U U CC A 17 2612 myoC-2657 - ACAGCAGAGCUUUCCAG 17 2613 myoC-826 + GAGAGGAAACCUCUGCC 17 1023 myoC-825 + GGAGAGGAAACCUCUGC 17 1034 myoC-2660 + UGGAGAGGAAACCUCUG 17 2614 myoC-824 + GGCUCCCCCAGCUGGAG 17 1040 myoC-2662 + GGGCUCCCCCAGCUGGA 17 2615 myoC-2663 + CAGGGCUCCCCCAGCUG 17 2616 myoC-823 + UGCAGGGCUCCCCCAGC 17 1165 myoC-2665 + U UGCAGGGCUCCCCCAG 17 2617 myoC-2666 + AGGACCCCGGGUGCUUG 17 2618 myoC-2667 + U CAG G ACACCCAG G ACC 17 2619 myoC-2668 + AGGUUGCUCAGGACACC 17 2620 myoC-2669 + CGGGCUGGCAGGUUGCU 17 2621 myoC-2670 + ACAA AACA ACC AG U G GC 17 2622 myoC-2671 + AAAGCAACAGGUCCCUA 17 2623 myoC-2672 + AG A A AG C A AC AG G U CCC 17 2624 myoC-2673 + AACGAGUCACACAGAAA 17 2625 myoC-2674 + UGAAUGAACGAGUCACA 17 2626 myoC-2675 + AAUGCCUGGAUGAAUGA 17 2627 myoC-2676 + AAUGAAUGCCUGGAUGA 17 2628 myoC-2677 + UGUCAAUGAAUGCCUGG 17 2629 myoC-2678 + AAAU UGUCAAUGAAUGC 17 2630 myoC-2679 + UACUCAAUAAAUUGUCA 17 2631 myoC-2680 + UGUCACCUCCACGAAGG 17 2632 myoC-2681 + GAGAAACUGUCACCUCC 17 2633 myoC-2682 + U UCUGCACGUCU UCCAU 17 2634 myoC-2683 + UCUUCUGCACGUCUUCC 17 2635 myoC-2684 + U UUCCUU UCUUUCAGCA 17 2636 myoC-798 + GGGAGGUGGCCU UGUUA 17 1041 myoC-2686 + AGGGAGGUGGCCU UGUU 17 2637 myoC-795 + GGCAGCAGGGGGCGCUA 17 1039 myoC-794 + AGGCAGCAGGGGGCGCU 17 1140 myoC-2689 + GAGGCAGCAGGGGGCGC 17 2638 myoC-791 + GCACGAUGGAGGCAGCA 17 1028 myoC-790 + GGCACGAUGGAGGCAGC 17 1038 myoC-2692 + GGGCACGAUGGAGGCAG 17 2639 myoC-788 + GGGGCCUCCGGGCACGA 17 1043 myoC-2694 + GGGGGCCUCCGGGCACG 17 2640 myoC-2695 + CUCGGGCU UGGGGGCCU 17 2641 myoC-783 + UUGGAAGACUCGGGCUU 17 1169 myoC-782 + CU UGGAAGACUCGGGCU 17 1158 myoC-2698 + GCUUGGAAGACUCGGGC 17 2642 myoC-2699 + GAGGAGGCUUGGAAGAC 17 2643 myoC-779 + UGAUGGAGGAGGAGGCU 17 1163 myoC-2701 + CUGAUGGAGGAGGAGGC 17 2644 myoC-777 + GCUGUGACUGAUGGAGG 17 1031 myoC-2703 + CGCUGUGACUGAUGGAG 17 2645 myoC-776 + AGCGCUGUGACUGAUGG 17 1137 myoC-2705 + CAGCGCUGUGACUGAUG 17 2646 myoC-775 + UGCAGCGCUGUGACUGA 17 1164 myoC-2707 + CUGCAGCGCUGUGACUG 17 2647 myoC-2708 + AGG ACG AU UCACGGG AA 17 2648 myoC-2709 + GCACCAGGACGAUUCAC 17 2649 myoC-2710 + UGCACCAGGACGAUUCA 17 2650 myoC-2711 + AUGCACCAGGACGAUUC 17 2651 myoC-2712 + CUCCAGCUCAGAUGCAC 17 2652 myoC-1385 + UCUGGAGCCUGGAGCCA 17 1685 myoC-2714 + U UCUGGAGCCUGGAGCC 17 2653 myoC-1384 + AUUUCCUUUCUGGAGCC 17 1684 myoC-2716 + CAUUUCCU UUCUGGAGC 17 2654 myoC-1383 + CCUCUCCAU UUCCUUUC 17 1683 myoC-2718 + CCCUCUCCAU UUCCU UU 17 2655 myoC-1382 + AGGCCCCUU UCCCUCUG 17 1682 myoC-2720 + GAGGCCCCUU UCCCUCU 17 2656 myoC-2721 + UGGAGGCCCCUU UCCCU 17 2657 myoC-1380 + UGGAAUUCUCCUGGACG 17 1680 myoC-2723 + CUGGAAUUCUCCUGGAC 17 2658 myoC-2724 + CACCUCCUGGAAUUCUC 17 2659 myoC-1378 + CUGCAGUCCCCACCUCC 17 1678 myoC-2726 + CCUGCAGUCCCCACCUC 17 2660 myoC-2727 + UGAACAACACUGAACAU 17 2661 myoC-2728 + CAG CCCCG U G AAC AACA 17 2662 myoC-2729 + GGAAAACUCCCAGCCCC 17 2663 myoC-1375 + AG G C U C AC AG G A AG C A A 17 1675 myoC-2731 + AAGGCUCACAGGAAGCA 17 2664 myoC-1374 + A AG A U A A A A AG G C U C AC 17 1674 myoC-2733 + AAAGAUAAAAAGGCUCA 17 2665 myoC-2734 + U UCUUCUCCUCCAAGCA 17 2666 myoC-2735 + ACU UCU UCUCCUCCAAG 17 2667 myoC-2736 + UGAAACUGCAUCCCUUC 17 2668 myoC-2737 + UUUUAACAGCUGACU UU 17 2669 myoC-1372 + AAAACCCAUGCACACCC 17 1672 myoC-2739 + GAAAACCCAUGCACACC 17 2670 myoC-1371 + AAUAAAGGCCU UCGUGA 17 1671 myoC-2741 + A A AU A A AG GCCUUCGUG 17 2671 myoC-2742 + AUUAAAUAAAGGCCUUC 17 2672 myoC-2743 + AAUUAACGGCCUAGGAA 17 2673 myoC-1369 + CCGUGAAUUAACGGCCU 17 1669 myoC-2745 + UCCG UGAAUUAACGGCC 17 2674 myoC-2746 + CUCCAGUCACUUCU UCC 17 2675 myoC-2747 + UUGCCCAGAAGACAUGA 17 2676 myoC-2748 + GUAGU UGCCCAGAAGAC 17 2677 myoC-2749 + AGGGCUGAGUAGUUGCC 17 2678 myoC-2750 + CCAAG U CC ACCAC AG G G 17 2679 myoC-2751 + AU AAGCCAAG U CCACCA 17 2680 myoC-2752 + CAGAACCAGAAAGAAAA 17 2681 myoC-2753 + CCAAUGGCAGAACCAGA 17 2682 myoC-2754 + CCAACCAAUGGCAGAAC 17 2683 myoC-2755 + G CACAG CC AACCA AU G G 17 2684 myoC-2756 + ACUAUGGCCCAGGGAAG 17 2685 myoC-1362 + AGACUAUGGCCCAGGGA 17 1662 myoC-2758 + AAGACUAUGGCCCAGGG 17 2686 myoC-1361 + GAGAAGACUAUGGCCCA 17 1661 myoC-1360 + AGAGAAGACUAUGGCCC 17 1660 myoC-2761 + CAGAGAAGACUAUGGCC 17 2687 myoC-2762 + CAAGGGUCUUUAUAGCA 17 2688 myoC-2763 + UGCAAGGGUCUU UAUAG 17 2689 myoC-2764 + CAGAACACGAGAGCUGC 17 2690 myoC-2765 + AAGUGUUCACAGAACAC 17 2691 myoC-2766 + G G A AG U G U U C AC AG A AC 17 2692 myoC-2767 + UCACAGGGAAGUGUUCA 17 2693 myoC-1356 + CCUCACAGAGAAUCACA 17 1656 myoC-1355 + CCCUCACAGAGAAUCAC 17 1655 myoC-2770 + CCCCUCACAGAGAAUCA 17 2694 myoC-2771 + CAACAUCCCCCCUCACA 17 2695 myoC-2772 + CUCAACAUCCCCCCUCA 17 2696 myoC-1353 + UGAUCAGUGAGGACUGA 17 1653 myoC-2774 + GUGAUCAGUGAGGACUG 17 2697 myoC-2775 + AGUCUGACGUGAUCAGU 17 2698 myoC-2776 + GGAGUCUGACGUGAUCA 17 2699 myoC-1351 + AUUGUGGCUCUCGGUCC 17 1651 myoC-2778 + CAU UGUGGCUCUCGGUC 17 2700 myoC-2779 + GGGU UCAU UGAGCUUUC 17 2701 myoC-2780 + UGUGGCUGU UGGGUUCA 17 2702 myoC-2781 + GAAGGAAAAUGUGGCUG 17 2703 myoC-1345 + UUGUCUAUGCUUAGGGA 17 1645 myoC-2783 + AUUGUCUAUGCUUAGGG 17 2704 myoC-1344 + GCCAU UGUCUAUGCU UA 17 1644 myoC-1343 + UGCCAUUGUCUAUGCUU 17 1643 myoC-2786 + AUGCCAUUGUCUAUGCU 17 2705 myoC-2787 + U UGCUCUGGCCCAGUU U 17 2706 myoC-2788 + GUGGGGUGCUGGUCAGG 17 2707 myoC-2789 + CUGCGUGGGGUGCUGGU 17 2708 myoC-1469 + GUCACUGCUGAGCUGCG 17 1769 myoC-2791 + AGUCACUGCUGAGCUGC 17 2709 myoC-2792 + GCUGUCAGCAGUCACUG 17 2710 myoC-2793 + AUUCCCACUGCCCUUGA 17 2711 myoC-2794 + GUCAAUUCCCACUGCCC 17 2712 myoC-2795 + CUAGAACCCAGGAUCAC 17 2713 myoC-2796 + CCCUGCCUCCUAGAACC 17 2714 myoC-2797 + AAUAUAGCCCUGCCUCC 17 2715 myoC-2798 + AGGUCUCCCGACUUCCC 17 2716 myoC-2799 + A AG G A A A A AU A U AG U A U 17 2717 myoC-1463 + AAUUACUCAGCUUGUAA 17 1763 myoC-2801 + GAAUUACUCAGCUUGUA 17 2718 myoC-2802 + CUACCUUG UGACUUGCU 17 2719 myoC-2803 + AAAGAGUUCCUAAUAAG 17 2720 myoC-1462 + AAAAAGAG UUCCUAAUA 17 1762 myoC-2805 + G AAAAAG AG UUCCUAAU 17 2721 myoC-2806 + CUAACUCCACAGAGAAA 17 2722 myoC-2807 + GUGCUGCUAACUCCACA 17 2723 myoC-2808 + UUGUGCUGCUAACUCCA 17 2724 myoC-1460 + CU UCCUGUU A A A AG AAA 17 1760 myoC-2810 + UCUUCCUGU UAAAAGAA 17 2725 myoC-2811 + UGUUUUCU UCCUGUUAA 17 2726 myoC-1459 + UGUUUGGCU UUACUCU U 17 1759 myoC-2813 + CUGUUUGGCUUUACUCU 17 2727 myoC-2814 + GUCAGCAAGACCUAGGC 17 2728 myoC-2815 + UCAGAUAGU A A AC A U CG 17 2729 myoC-2816 + GGUACUAGUCUCAUUU U 17 2730 myoC-2817 + U UGUUUACAGCUGACCA 17 2731 myoC-2818 + ACU UGAGACAUUUACAA 17 2732 myoC-2819 + UGCAGUUAAGCCUGAAC 17 2733 myoC-2820 + UGGU UCUGCAGUUAAGC 17 2734 myoC-2821 + GACUCACCUCCAGAGUG 17 2735 myoC-1451 + CAGACUCACCUCCAGAG 17 1751 myoC-2823 + GCAGACUCACCUCCAGA 17 2736 myoC-2824 + CCUGGCAGACUCACCUC 17 2737 myoC-2825 + CAACAGUGUCAAUACU U 17 2738 myoC-2826 + UGAAAUAAUGAUUGCCU 17 2739 myoC-2827 + AAG U AACU U UAAG CCAC 17 2740 myoC-2828 + AAAU AU ACCAAAACUG U 17 2741 myoC-2829 + AC A U U A A U A A ACCC A A A 17 2742 myoC-2830 + U UACAUUAAUAAACCCA 17 2743 myoC-2831 + UCAAAU UCACAGGCU U U 17 2744 myoC-2832 + AAAAUGU UAAAUUUAG U 17 2745 myoC-1443 + UAUGGCUCUAU UCGCAA 17 1743 myoC-2834 + UUAUGGCUCUAUUCGCA 17 2746 myoC-2835 + GUACUGUUAUUACCACU 17 2747 myoC-2836 + CUAAU UUCAAAGUAGUU 17 2748 myoC-1498 + UAAAAACAAGAUCCAGC 17 1798 myoC-2838 + U U AAAAACAAG AUCCAG 17 2749 myoC-2839 + AAAGGAAACAAAUGAUA 17 2750 myoC-1497 + UAAAAUAUAGAUUACAA 17 1797 myoC-2841 + AUAAAAUAUAGAUUACA 17 2751 myoC-2842 + AUCUGGGGAACUCUUCU 17 2752 myoC-1496 + CUCAUUGGUGAAAUCUG 17 1796 myoC-1495 + CCUCAUUGGUGAAAUCU 17 1795 myoC-1494 + ACCUCAUUGG UGAAAUC 17 1794 myoC-2846 + AACCUCAUUGGUGAAAU 17 2753 myoC-2847 + UGCCAAGAACCUCAUUG 17 2754 myoC-2848 + CUGUGUGUG UGCAUGCC 17 2755 myoC-2849 + CAACUGUGUAUCUUUGG 17 2756 myoC-1491 + AACAACUGUGUAUCUU U 17 1791 myoC-1490 + AA AC AACU G UGUAUCU U 17 1790 myoC-2852 + AAAACAACUGUGUAUCU 17 2757 myoC-2853 + CAGGG AG AGCAU UCCU A 17 2758 myoC-2854 + CCCUACCAGGCUCCAGG 17 2759 myoC-1488 + CACCCUACCAGGCUCCA 17 1788 myoC-1487 + GCACCCUACCAGGCUCC 17 1787 myoC-2857 + AGCACCCUACCAGGCUC 17 2760 myoC-2858 + AC AG CC AG CC AG A AC AC 17 2761 myoC-2859 + GAAAAAUAACAGCCAGC 17 2762 myoC-2860 + AAGACGUAGCAGGGACA 17 2763 myoC-2861 + UUAAGACGUAGCAGGGA 17 2764 myoC-959 + GUCCUUUAAGACGUAGC 17 1000 myoC-2863 + AGUCCUUUAAGACGUAG 17 2765 myoC-958 + GGCACUAUGCUAGGAAC 17 1062 myoC-2865 + AGGCACUAUGCUAGGAA 17 2766 myoC-957 + GUGCCAGGCACUAUGCU 17 1071 myoC-2867 + UGUGCCAGGCACUAUGC 17 2767 myoC-2868 + CACUCUGCAAACUCAUU 17 2768 myoC-2869 + U UCACUCUGCAAACUCA 17 2769 myoC-2870 + GGUGUGCUGAUU UCAAC 17 2770 myoC-2871 + CG U ACACACACU U ACAC 17 2771 myoC-2872 + UGGAGUU UCUUU UUAAA 17 2772 myoC-951 + CCUUCCAGAAGUCUGUU 17 1242 myoC-2874 + ACCUUCCAGAAGUCUGU 17 2773 myoC-2875 + CU UAGAAAAUAACCUUC 17 2774 myoC-2876 + GCUGCCAGCAAGAUUCU 17 2775 myoC-948 + GGUGGGGCUGUGCACAG 17 1069 myoC-947 + GGGUGGGGCUGUGCACA 17 1066 myoC-946 + UGGGUGGGGCUGUGCAC 17 1257 myoC-2880 + CUGGGUGGGGCUGUGCA 17 2776 myoC-943 + GGCCACGUGAGGCUGGG 17 1063 myoC-2882 + UGGCCACGUGAGGCUGG 17 2777 myoC-2883 + GAGGUGGCCACGUGAGG 17 2778 myoC-2884 + AAGACAGAGGUGGCCAC 17 2779 myoC-2885 + CCCUUCAUGGGGGAAGA 17 2780 myoC-937 + G AGCCAGCCCU UCAUGG 17 1056 myoC-936 + GGAGCCAGCCCUUCAUG 17 1061 myoC-935 + GGGAGCCAGCCCUUCAU 17 1064 myoC-934 + GGGG AGCCAGCCCU UCA 17 1065 myoC-2890 + UGGGGAGCCAGCCCUUC 17 2781 myoC-933 + GAGGUUUAUAUAUACUG 17 1057 myoC-932 + AGAGGUUUAUAUAUACU 17 1230 myoC-931 + GAGAGGUUUAUAUAUAC 17 997 myoC-2894 + AGAGAGGUUUAUAUAUA 17 2782 myoC-2895 + CUCAUGCCCGAGCUCCA 17 2783 myoC-2896 + GGCUCAUGCCCGAGCUC 17 2784 myoC-2897 + GCCU UGCUGGCUCAUGC 17 2785 myoC-2898 + UGCUGAGAGGUGCCUGG 17 2786 myoC-2899 + GCUGUGCUGAGAGGUGC 17 2787 myoC-2900 + GAAAGCUCUGCUGUGCU 17 2788 myoC-2901 + UGGAAAGCUCUGCUGUG 17 2789 myoC-2902 + CU UGGUGAGGCUUCCUC 17 2790 myoC-2903 + GCUUGGUGAGGCUUCCU 17 2791
Table 5F provides exemplary targeting domains for repressing (i.e., knocking down or decreasing) expression of the MYOC gene. Any of the targeting domains in the table can be used with an N. meningitidis eiCas9 molecule to cause a steric block in the promoter region to block transcription elongation resulting in the repression of the MYOC gene. Any of the targeting domains in the table can be used with an N. meningitidis eiCas9 fused to a transcriptional repressor to decrease transcription and therefore downregulate gene expression.
Table 5F DNA Target Site
gRNA Name Targeting Domain SEQ ID NO
Strand Length myoC-3098 - CGUGUUCUGUGAACACUUCC 20 2856 myoC-1975 - CCAGAGCAAGUGGAAAAUGC 20 2132 myoC-3100 - GAUAGUGUAUGAGCAAGAAA 20 2857 myoC-1996 - AGGGCAGUGGGAAUUGACCA 20 2145 myoC-3102 - AG U U C A AG GGAAGUCGGGAG 20 2858 myoC-3103 - ACAAGGUAGUAACUGAGGCU 20 2859 myoC-3104 - CAUUCCUAAGAGUAAAGCCA 20 2860 myoC-3105 - AAGCCUAGGUCU UGCUGACU 20 2861 myoC-3106 - UCAUU UCAGCGAUGUU UACU 20 2862 myoC-2040 - UUGGGUUUAUUAAUGUAAAG 20 2173 myoC-3108 - CAAAGUGGUAAUAACAGUAC 20 2863 myoC-3109 - CAUCUUUCUGAGAAGAGUUC 20 2864 myoC-3110 - AUGCACACACACAGAGUAAG 20 2865 myoC-3111 + UCUCCAGCUCAGAUGCACCA 20 2866 myoC-3112 + UCUGAGGAAACACUGUCCCC 20 2867 myoC-3113 + ACCAG AAAG AAAACCG AG U C 20 2868 myoC-3114 + AGGUCUCCCGACUUCCCUUG 20 2869 myoC-2264 + U UUUCUUCCUGUUAAAAGAA 20 2345 myoC-3116 + UCAGAUAGUAAACAUCGCUG 20 2870 myoC-3117 + GCUCUAAAGAUUCUAU UCUU 20 2871 myoC-3118 + UGGAGAAACACAGU UUGCUC 20 2872 myoC-3119 + UAACU UUAAGCCACUUGAAA 20 2873 myoC-3120 + UGUAAUAUAGUAUAAAAUGU 20 2874 myoC-3121 + AGGAAACAAAUGAUAAUGAA 20 2875 myoC-3122 + AUGU UUUCAAAUAUAUAAAA 20 2876 myoC-3123 + G AG AGCAU UCCU AU AG AAGC 20 2877 myoC-3124 + U UACACCAGGACUACUGGUG 20 2878 myoC-3125 + GGGUUGCCUUCACGCUGCCA 20 2879 myoC-3126 - GUUCUGUGAACACUUCC 17 2880 myoC-2521 - GAGCAAGUGGAAAAUGC 17 2512 myoC-3128 - AGUGUAUGAGCAAGAAA 17 2881 myoC-2542 - GCAGUGGGAAUUGACCA 17 2525 myoC-3130 - UCAAGGGAAGUCGGGAG 17 2882 myoC-3131 - AGGUAGUAACUGAGGCU 17 2883 myoC-3132 - UCCUAAGAGUAAAGCCA 17 2884 myoC-3133 - CCUAGGUCUUGCUGACU 17 2885 myoC-3134 - UUUCAGCGAUGU UUACU 17 2886 myoC-2586 - GGUUUAUUAAUGUAAAG 17 2553 myoC-3136 - AGUGGUAAUAACAGUAC 17 2887 myoC-3137 - CUU UCUGAGAAGAGUUC 17 2888 myoC-3138 - CACACACACAG AG UAAG 17 2889 myoC-3139 + CCAGCUCAGAUGCACCA 17 2890 myoC-3140 + GAGGAAACACUGUCCCC 17 2891 myoC-3141 + AG AAAG AAAACCG AG UC 17 2892 myoC-3142 + UCUCCCGACUUCCCU UG 17 2893 myoC-2810 + UCU UCCUGU UAAAAGAA 17 2725 myoC-3144 + GAUAGUAAACAUCGCUG 17 2894 myoC-3145 + CUAAAGAU UCUAUUCU U 17 2895 myoC-3146 + AGAAACACAGU UUGCUC 17 2896 myoC-3147 + CU UUAAGCCACUUGAAA 17 2897 myoC-3148 + AAUAUAGUAUAAAAUG U 17 2898 myoC-3149 + A A AC A A A UGAUAAUGAA 17 2899 myoC-3150 + UUUUCAAAUAUAUAAAA 17 2900 myoC-3151 + AGCAUUCCUAUAGAAGC 17 2901 myoC-3152 + CACCAGGACUACUGGUG 17 2902 myoC-3153 + U UGCCUUCACGCUGCCA 17 2903
Table 6 A provides exemplary targeting domains for knocking out the MYOC gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. pyogeness Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 6A
1st Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-163 + GUUAUGGAUGACUGACA 17 496 myoC-155 + GUCCCGCUCCCGCCUCA 17 546 myoC-167 + GCUGGAU UCAUUGGGAC 17 497 myoC-139 - GCGGGAGCGGGACCAGC 17 534 myoC-138 - GCACCCUGAGGCGGGAG 17 533 myoC-152 + GAACUGACUUGUCUCGG 17 492 myoC-157 + GGUCCAAGGUCAAUUGG 17 493 myoC-161 + GCUGAGUCGAGCUUUGG 17 495 myoC-166 + GGGCAGCUGGAUUCAUU 17 553 myoC-129 - GCACGU UGCUGCAGCU U 17 488 myoC-160 + GGAGCUGAGUCGAGCUU 17 494 myoC-126 + GCAGCUGGAU UCAU UGGGAC 20 523 myoC-107 - GAGGUUGGAAAGCAGCAGCC 20 511 myoC-113 + GCUGCUGCUUUCCAACCUCC 20 515 myoC-123 + GUCGAGCU UUGGUGGCCUCC 20 485 myoC-105 - GAGGCGGGAGCGGGACCAGC 20 510 myoC-104 - GGGCACCCUGAGGCGGGAGC 20 509 myoC-117 + GCUGGUCCCGCUCCCGCCUC 20 484 myoC-125 + GACAUGGCCUGGCUCUGCUC 20 522 myoC-114 + GAACUGACU UGUCUCGGAGG 20 482 myoC-121 + GGUCCAAGGUCAAUUGGUGG 20 520 myoC-122 + GGAGCUGAGUCGAGCUUUGG 20 521 myoC-127 + GCAUCGGCCACUCUGGUCAU 20 487 myoC-106 - GGAAACCCAAACCAGAGAGU 20 479 myoC-95 - GCCUGCCUGGUGUGGGAUGU 20 500 myoC-115 + GUCUCGGAGGAGGUUGCUGU 20 516 myoC-93 - GCUUCUGGCCUGCCUGGUGU 20 478 myoC-124 + GGCCUCCAGGUCUAAGCGUU 20 486 myoC-91 - GUGCACGUUGCUGCAGCUUU 20 477
Table 6B provides exemplary targeting domains for knocking out the MYOC gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. pyogeness Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 6B
Figure imgf000222_0001
myoC-268 - AACCCAAACCAG AG AG U 17 654 myoC-297 + CCUCCAGGUCUAAGCGU 17 683 myoC-298 + CUCCAGGUCUAAGCGUU 17 684 myoC-227 + UAAGUUAUGGAUGACUGACA 20 613 myoC-213 + CUGGUCCCGCUCCCGCCUCA 20 599 myoC-233 + AUUGGGACUGGCCACACUGA 20 619 myoC-226 + UGCUGUCUCUCUGUAAGUUA 20 612 myoC-234 + UGGCCACACUGAAGGUAUAC 20 620 myoC-179 - CAGCACCCAACGCUUAGACC 20 565 myoC-183 - CCACCAAUUGACCUUGGACC 20 569 myoC-181 - CAAAGCUCGACUCAGCUCCC 20 567 myoC-228 + UAUGGAUGACUGACAUGGCC 20 614 myoC-222 + AUUGGUGGAGGAGGCUCUCC 20 608 myoC-212 + CUCUGGUUUGGGUUUCCAGC 20 598 myoC-239 + CCCCACAUCCCACACCAGGC 20 625 myoC-236 + UAUACUGGCAUCGGCCACUC 20 622 myoC-2356 + AGGCUUGGUGAGGCUUCCUC 20 2410 myoC-241 + AGCUGGACAGCUGGCAUCUC 20 627 myoC-170 - AGCUGUCCAGCUGCUGCUUC 20 556 myoC-191 - CCUCCGAGACAAGUCAGUUC 20 577 myoC-3159 + ACAGAAGAACCUCAUUGCAG 20 2905 myoC-190 - UGGGCACCCUGAGGCGGGAG 20 576 myoC-221 + CCAAG G U CA AU UGGUGGAGG 20 607 myoC-209 + CCAGAACUGACUUGUCUCGG 20 595 myoC-180 - CACCCAACG CU U AG ACC U G G 20 566 myoC-192 - CCGAGACAAGUCAGUUCUGG 20 578 myoC-220 + CCUGGUCCAAGGUCAAUUGG 20 606 myoC-3160 - CU CACCA AG CCU CU G CA AU G 20 2906 myoC-177 - AUG CCAG U AU ACCU U CAG U G 20 563 myoC-3161 + CUCAUUGCAGAGGCUUGGUG 20 2907 myoC-219 + CAGCCUGGUCCAAGGUCAAU 20 605 myoC-235 + CACUGAAGGUAUACUGGCAU 20 621 myoC-182 - CCUCCUCCACCAAUUGACCU 20 568 myoC-3162 + AGAACCUCAUUGCAGAGGCU 20 2908 myoC-208 + CCUCCAGAACUGACUUGUCU 20 594 myoC-225 + UGGCCUCCAGGUCUAAGCGU 20 611 myoC-197 - UGAGAAUCUGGCCAGGAGGU 20 583 myoC-232 + UCUGGGCAGCUGGAUUCAUU 20 618 myoC-169 - UGUGCACGUUGCUGCAGCUU 20 555 myoC-224 + CAGGGAGCUGAGUCGAGCUU 20 610 myoC-210 + CAGUCUCCAACUCUCUGGUU 20 596
Table 6C provides exemplary targeting domains for knocking out the MYOC gene selected according to the third tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. pyogeness Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 6C
3rd Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-159 + GUGGAGGAGGCUCUCCA 17 549 myoC-132 - GACAGCUCAGCUCAGGA 17 527 myoC-168 + GGGACUGGCCACACUGA 17 554 myoC-142 - G U U G G A A AG C AG C AG CC 17 537 myoC-164 + GGAUGACUGACAUGGCC 17 551 myoC-130 - GCUGCUUCUGGCCUGCC 17 525 myoC-151 + GCUGCUUUCCAACCUCC 17 543 myoC-162 + GAGCUUUGGUGGCCUCC 17 550 myoC-158 + GGUGGAGGAGGCUCUCC 17 548 myoC-156 + GCCCCUCCUGGGUCUCC 17 547 myoC-165 + GCUCUGCUCUGGGCAGC 17 552 myoC-134 - GGGGCUGCAGAGGGAGC 17 529 myoC-137 - GCUGGGCACCCUGAGGC 17 532 myoC-140 - G C A AG A A A A U G AG A A U C 17 535 myoC-154 + GGUCCCGCUCCCGCCUC 17 545 myoC-153 + GGCAGUCUCCAACUCUC 17 544 myoC-3163 + GAAGAACCUCAUUGCAG 17 2909 myoC-133 - GCCCCAGGAGACCCAGG 17 528 myoC-143 - GGAAAGCAGCAGCCAGG 17 538 myoC-136 - GGGAGCUGGGCACCCUG 17 531 myoC-131 - GCCUGGUGUGGGAUGUG 17 526 myoC-135 - GGGCUGCAGAGGGAGCU 17 530 myoC-141 - GAAUCUGGCCAGGAGGU 17 536 myoC-120 + GGGCCUGGCAGCCUGGUCCA 20 519 myoC-99 - GACCCAGGAGGGGCUGCAGA 20 504 myoC-97 - GGACCAGGCUGCCAGGCCCC 20 502 myoC-92 - GCUGCUGCUUCUGGCCUGCC 20 498 myoC-118 + GCUCCCUCUGCAGCCCCUCC 20 517 myoC-119 + GCAGCCCCUCCUGGGUCUCC 20 518 myoC-128 + G G C AG G CC AG A AG C AG C AG C 20 524 myoC-100 - GGAGGGGCUGCAGAGGGAGC 20 505 myoC-103 - GGAGCUGGGCACCCUGAGGC 20 508 myoC-96 - GGGCCAGGACAGCUCAGCUC 20 501 myoC-116 + GUAGGCAGUCUCCAACUCUC 20 483 myoC-98 - GGCCCCAGGAGACCCAGGAG 20 503 myoC-108 - GUUGGAAAGCAGCAGCCAGG 20 480 myoC-102 - GGGAGCUGGGCACCCUGAGG 20 507 myoC-94 - GGCCUGCCUGGUG UGGGAUG 20 499 myoC-101 - GAGGGGCUGCAGAGGGAGCU 20 506
Table 6D provides exemplary targeting domains for knocking out the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. pyogeness Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 6D
Figure imgf000225_0001
myoC-273 - AUGAGAAUCUGGCCAGG 17 659 myoC-282 + CUGACUUGUCUCGGAGG 17 668 myoC-266 - AGCUGGGCACCCUGAGG 17 652 myoC-295 + CCAAGGUCAAUUGGUGG 17 681 myoC-248 - CCUGGUGUGGGAUGUGG 17 634 myoC-246 - CUGCCUGGUGUGGGAUG 17 632 myoC-290 + CCCUCCUGGGUCUCCUG 17 676 myoC-244 - UUCUGGCCUGCCUGGUG 17 630 myoC-3164 + AUUGCAGAGGCUUGG UG 17 2910 myoC-302 + UGGGCAGCUGGAUUCAU 17 688 myoC-288 + CCUCUGCAGCCCCUCCU 17 674 myoC-289 + CCCCUCCUGGGUCUCCU 17 675 myoC-3165 + ACCUCAUUGCAGAGGCU 17 2911 myoC-301 + UGGCCUGGCUCUGCUCU 17 687 myoC-247 - UGCCUGGUGUGGGAUG U 17 633 myoC-283 + UCGGAGGAGGU UGCUGU 17 669 myoC-245 - UCUGGCCUGCCUGGUGU 17 631 myoC-284 + UCUCCAACUCUCUGGUU 17 670 myoC-242 - CACGUUGCUGCAGCU UU 17 628 myoC-285 + CUCCAACUCUCUGGU UU 17 671 myoC-223 + U UGGUGGAGGAGGCUCUCCA 20 609 myoC-187 - AGGCCCCAGGAGACCCAGGA 20 573 myoC-175 - CAGGACAGCUCAGCUCAGGA 20 561 myoC-193 - AGGAAGAGAAGAAGCGACUA 20 579 myoC-238 + U GGCCCCCACAU CCCACACC 20 624 myoC-185 - UGCCAGGCCCCAGGAGACCC 20 571 myoC-218 + UCUCCUGGGGCCUGGCAGCC 20 604 myoC-178 - CAGCUGCCCAGAGCAGAGCC 20 564 myoC-174 - UGGUGUGGGAUGUGGGGGCC 20 560 myoC-217 + CUCCUGGGUCUCCUGGGGCC 20 603 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 581 myoC-184 - UGACCUUGGACCAGGCUGCC 20 570 myoC-237 + CUUCCUGAGCUGAGCUGUCC 20 623 myoC-240 + AGAAGCAGCAGCUGGACAGC 20 626 myoC-230 + CUGGCUCUGCUCUGGGCAGC 20 616 myoC-194 - A AG G C A AG A A A A U G AG A A U C 20 580 myoC-188 - AGACCCAGGAGGGGCUGCAG 20 574 myoC-176 - AGGAAGGCCAAUGACCAGAG 20 562 myoC-186 - CAGGCCCCAGGAGACCCAGG 20 572 myoC-196 - AAAAUGAGAAUCUGGCCAGG 20 582 myoC-173 - CUGCCUGGUGUGGGAUGUGG 20 559 myoC-189 - AGAGGGAGCUGGGCACCCUG 20 575 myoC-216 + AGCCCCUCCUGGGUCUCCUG 20 602 myoC-171 - UGCU UCUGGCCUGCCUGGUG 20 557 myoC-172 - CCUGCCUGGUGUGGGAUGUG 20 558 myoC-231 + CUCUGGGCAGCUGGAU UCAU 20 617 myoC-214 + CUCCCUCUGCAGCCCCUCCU 20 600 myoC-215 + CAGCCCCUCCUGGGUCUCCU 20 601 myoC-229 + ACAUGGCCUGGCUCUGCUCU 20 615 myoC-211 + AGUCUCCAACUCUCUGGUUU 20 597
Table 6E provides exemplary targeting domains for knocking out the MYOC gene selected according to the fifth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through
complementary base pairing. Any of the targeting domains in the Table lean be used with a S. pyogeness Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 6E
5th Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-663 + U U AU U UCACAAUGU AAA 17 963 myoC-610 + CAG U U U GG AG AGG ACAA 17 918 myoC-43 - AGCACCGAUGAGGCCAA 17 433 myoC-668 + GUAACAUGCAAGAGCAA 17 968 myoC-567 - CCA AG CUGUACAGGCAA 17 888 myoC-145 - GGUAGCAAGGCUGAGAA 17 540 myoC-626 + GUAUGUGAACCUUAGAA 17 926 myoC-578 - GGGGGGAGCAGGCUGAA 17 899 myoC-85 + UUAUAGCGGUUCUUGAA 17 473 myoC-670 + AUGCUGACAGAAGAUAA 17 970 myoC-657 - A A AAG C A U A AC U U C U A A 17 957 myoC-662 + UU UAUUUCACAAUG UAA 17 962 myoC-646 - AUCCAGAAGGAUGAACA 17 946 myoC-77 - CUGGGACAACUUGAACA 17 466 myoC-36 - UUCUUGGGG UGGCUACA 17 429 myoC-601 + GCUGCUGACGGUGUACA 17 909 myoC-656 - UGCUCUUGCAUGUUACA 17 956 myoC-31 - CCUGGAGCUGGCUACCA 17 425 myoC-580 - GGAGAGCCAGCCAGCCA 17 901 myoC-50 + CGUGGUAGCCAGCUCCA 17 397 myoC-81 + AAAGAGCUUCUUCUCCA 17 469 myoC-538 - GGGAGCCUCUAUUUCCA 17 880 myoC-531 - UAGGCCACUGGAAAGCA 17 873 myoC-144 - GCAGCCAGGAGGUAGCA 17 539 myoC-524 - AAUCGACACAGUUGGCA 17 866 myoC-527 - AUCAGCCAGU UUAUGCA 17 869 myoC-570 - GCAGAAGGAGAUGCUCA 17 891 myoC-89 + CUUGAAUGGGAUGGUCA 17 476 myoC-3166 + G AU UCCCACAAAG U U CA 17 2912 myoC-345 + CUCCUGAGAUAGCCAGA 17 731 myoC-645 - GUUUUCAUUAAUCCAGA 17 945 myoC-568 - GUACAGGCAAUGGCAGA 17 889 myoC-3167 - CCACCAGGCUCCAGAGA 17 2913 myoC-342 - UAUCUCAGGAGUGGAGA 17 728 myoC-274 - AGGUAGCAAGGCUGAGA 17 660 myoC-28 - GACAGUGAAGGCUGAGA 17 401 myoC-625 + AGUAUGUGAACCUUAGA 17 925 myoC-671 + AU UCCUGAAUAGUUAGA 17 971 myoC-87 + GCGGUUCU UGAAUGGGA 17 446 myoC-352 + GGACUUCAGUUCCUGGA 17 738 myoC-602 + GGUGCCACAGAUGAUGA 17 910 myoC-577 - UGGGGGGAGCAGGCUGA 17 898 myoC-600 + UGAGGUGUAGCUGCUGA 17 908 myoC-649 - CAGGAAUUGUAGUCUGA 17 949 myoC-27 - GAAU ACCGAGACAG UG A 17 392 myoC-90 + GUCAUAAGCAAAGUUGA 17 447 myoC-337 - UGCUUCCCGAAUUUUGA 17 723 myoC-46 + UAGCCACCCCAAGAAUA 17 395 myoC-528 - GCAGGGCUACCCUUCUA 17 870 myoC-519 - ACAAUUACUGGCAAGUA 17 861 myoC-655 - U UGGGGCAAAAGCUGUA 17 955 myoC-635 + GUGGUCUCCUGGGUGUA 17 935 myoC-604 + UGGCGACUGACUGCU UA 17 912 myoC-650 - UCU UCUGUCAGCAUUUA 17 950 myoC-627 + GGUAGCCCUGCAUAAAC 17 927 myoC-343 - AGUGGAGAGGGAGACAC 17 729 myoC-279 + CUCGGGUCUGGGGACAC 17 665 myoC-72 - AACUU UGCUUAUGACAC 17 464 myoC-530 - CAUACUGCCUAGGCCAC 17 872 myoC-532 - AGGCCACUGGAAAGCAC 17 874 myoC-73 - GCU UAUGACACAGGCAC 17 451 myoC-47 + AGCCACCCCAAGAAUAC 17 435 myoC-344 + G AAACU U AACU U CAU AC 17 730 myoC-566 - AAGCCUCCAAGCUGUAC 17 887 myoC-518 - ACAGCAGAAACAAUUAC 17 860 myoC-629 + GGUCAUACU C A A A A ACC 17 929 myoC-557 - UGGAACUCG A AC A A ACC 17 883 myoC-148 - GCUCGGGCUGUGCCACC 17 490 myoC-3168 - UCUUUUCUGAAUU UACC 17 2914 myoC-521 - CACCUACCCCUACACCC 17 863 myoC-562 - GAUUGACUACAACCCCC 17 886 myoC-583 + U UCAGCCUGCUCCCCCC 17 904 myoC-621 + U UCUGGACUCAGCGCCC 17 921 myoC-581 - CCAGCCAGCCAGGGCCC 17 902 myoC-1590 + CAAAGCUGCCUGGGCCC 17 1805 myoC-29 - GCUGAGAAGGAAAUCCC 17 423 myoC-605 + ACGGAUGU UUGUCUCCC 17 913 myoC-79 + CAUGUUCAAGUUGUCCC 17 467 myoC-579 - GGGAGAGCCAGCCAGCC 17 900 myoC-142 - G U U G G A AAG CAG CAG CC 17 537 myoC-3169 + UUACCUUCUCUGGAGCC 17 2915 myoC-525 - UGGCACGGAUGUCCGCC 17 867 myoC-674 + A AG CAG U C A A AG C U G CC 17 974 myoC-75 - AGAAGAAGCUCUUUGCC 17 465 myoC-644 + ACUAGUUCUCCACAUCC 17 944 myoC-280 + UCAGCCU UGCUACCUCC 17 666 myoC-49 + CCGUGGUAGCCAGCUCC 17 436 myoC-571 - GAGAUGCUCAGGGCUCC 17 892 myoC-632 + UUCUCCACGUGGUCUCC 17 932 myoC-80 + CAAAGAGCUUCUUCUCC 17 468 myoC-336 - GGACACU UUGGCCUUCC 17 722 myoC-351 + GCUCGGACU UCAGUUCC 17 737 myoC-537 - GGGGAGCCUCUAUUUCC 17 879 myoC-349 + U U C A A A A UUCGGGAAGC 17 735 myoC-39 - UUGGCUGUGGAUGAAGC 17 430 myoC-576 - GGGCUCCUGGGGGGAGC 17 897 myoC-30 - AAGGAAAUCCCUGGAGC 17 424 myoC-1591 + GCUGCCUGGGCCCUGGC 17 1801 myoC-582 + CCUGGGCCCUGGCUGGC 17 903 myoC-664 + U UACU UAUAU UCGAUGC 17 964 myoC-526 - CAUCAGCCAGUUUAUGC 17 868 myoC-556 - ACUGAACCCAGAGAAUC 17 882 myoC-338 - UUGAAGGAGAGCCCAUC 17 724 myoC-535 - GGUGCUGUGGUGUACUC 17 877 myoC-40 - UGGAUGAAGCAGGCCUC 17 431 myoC-658 - AAGCAGAAUAGCUCCUC 17 958 myoC-569 - GGCAGAAGGAGAUGCUC 17 890 myoC-147 - GACCCGAGACACUGCUC 17 489 myoC-339 - GCCCAUCUGGCUAUCUC 17 725 myoC-277 + AGCCCGAGCAGUGUCUC 17 663 myoC-606 + UCGAGUUCCAGAUUCUC 17 914 myoC-3170 + UGCAUUCUUACCUUCUC 17 2916 myoC-149 + GAGCAGUGUCUCGGGUC 17 491 myoC-88 + UCUUGAAUGGGAUGGUC 17 475 myoC-348 + GCUCUCCUUCAAAAUUC 17 734 myoC-647 - UCACCAUCUAACUAUUC 17 947 myoC-672 + GACCAUGUUCAUCCUUC 17 972 myoC-52 + AUAUCUUAUGACAGUUC 17 438 myoC-669 + CAAGAGCAAUGGU UUUC 17 969 myoC-146 - GUAGCAAGGCUGAGAAG 17 541 myoC-45 + UGCUGUAAAUGACCCAG 17 434 myoC-665 + UAUUCGAUGCUGGCCAG 17 965 myoC-82 + AAGAGCUUCUUCUCCAG 17 470 myoC-623 + GCACCCGUGCUU UCCAG 17 923 myoC-3171 - A AG G U A AG A A U G C AG AG 17 2917 myoC-340 - UCUGGCUAUCUCAGGAG 17 726 myoC-341 - CUAUCUCAGGAGUGGAG 17 727 myoC-609 + CUGGGUUCAGU UUGGAG 17 917 myoC-643 + GCUGUUCUCAGCGUGAG 17 943 myoC-622 + CAGCGCCCUGGAAAUAG 17 922 myoC-84 + UGCUGCUGUACUUAUAG 17 472 myoC-636 + UGGUCUCCUGGGUG UAG 17 936 myoC-522 - ACACCCAGGAGACCACG 17 864 myoC-631 + UGUGUCGAUUCUCCACG 17 931 myoC-333 - UUAAUGCAGUUUCUACG 17 719 myoC-616 + AAUACGGGAACUGUCCG 17 920 myoC-536 - GUGCUGUGGUGUACUCG 17 878 myoC-143 - GGAAAGCAGCAGCCAGG 17 538 myoC-83 + AGAGCUUCUUCUCCAGG 17 471 myoC-638 + CUGGGUGUAGGGGUAGG 17 938 myoC-35 - U UCCCGUAUUCUUGGGG 17 428 myoC-575 - UGCUCAGGGCUCCUGGG 17 896 myoC-3172 - UAAGAAUGCAGAGUGGG 17 2918 myoC-630 + CAUACUCAAAAACCUGG 17 930 myoC-3173 + CCUUCUCUGGAGCCUGG 17 2919 myoC-574 - AUGCUCAGGGCUCCUGG 17 895 myoC-3174 - GUAAGAAUGCAGAGUGG 17 2920 myoC-585 + UUGCCUGUACAGCUUGG 17 906 myoC-42 - CAU U U ACAG CACCG AU G 17 432 myoC-514 - CUGAAU UUACCAGGAUG 17 856 myoC-628 + GCAUAAACUGGCUGAUG 17 928 myoC-573 - GAUGCUCAGGGCUCCUG 17 894 myoC-38 - GGACAUUGACUUGGCUG 17 402 myoC-599 + GACGGUAGCAUCUGCUG 17 907 myoC-533 - GGAAAGCACGGGUGCUG 17 875 myoC-559 - AAUGCCU UCAUCAUCUG 17 885 myoC-648 - UCAGGAAU UGUAGUCUG 17 948 myoC-150 + GCAG UGUCUCGGGUCUG 17 542 myoC-3175 - GGUAAGAAUGCAGAGUG 17 2921 myoC-520 - CUGGCAAGUAUGGUGUG 17 862 myoC-666 + AGUUAUGCUUUU UAUUG 17 966 myoC-642 + AGGGGUAGGUGGGCUUG 17 942 myoC-667 + CUU UUUAUUGUGGCUUG 17 967 myoC-34 - CAGU UCCCGUAUUCUUG 17 427 myoC-654 - AGU UU UCUUGUGAUU UG 17 954 myoC-3176 - CUCUUCCU UGAACU UUG 17 2922 myoC-86 + UAUAGCGGUUCU UGAAU 17 474 myoC-603 + ACAGAUGAUGAAGGCAU 17 911 myoC-44 + GGCACCU UUGGCCUCAU 17 404 myoC-346 + UCCUGAGAUAGCCAGAU 17 732 myoC-651 - CUUCUGUCAGCAUUUAU 17 951 myoC-673 + CUGGAUUAAUGAAAACU 17 973 myoC-37 - CU ACACGG ACAU UG ACU 17 394 myoC-534 - GGGUGCUGUGGUGUACU 17 876 myoC-558 - GGAACUCGAACAAACCU 17 884 myoC-624 + GUGCUUUCCAGUGGCCU 17 924 myoC-529 - AGGUUCACAUACUGCCU 17 871 myoC-675 + AGCAGUCAAAGCUGCCU 17 975 myoC-76 - GAAGAAGCUCU UUGCCU 17 452 myoC-572 - AGAUGCUCAGGGCUCCU 17 893 myoC-633 + UCUCCACGUGGUCUCCU 17 933 myoC-584 + CCAU UGCCUGUACAGCU 17 905 myoC-350 + AGGAACUUCAGUUAGCU 17 736 myoC-640 + GUAGGGGUAGGUGGGCU 17 940 myoC-275 - AGACCCGAGACACUGCU 17 661 myoC-78 + GGAGGCUUUUCACAUCU 17 445 myoC-41 - GGAUGAAGCAGGCCUCU 17 403 myoC-607 + CGAGUUCCAGAU UCUCU 17 915 myoC-278 + AGCAGUG UCUCGGGUCU 17 664 myoC-51 + CUCAGCCU UCACUGUCU 17 437 myoC-276 + CAGCCCGAGCAGUGUCU 17 662 myoC-544 - GACAGUUCCCGUAUUCU 17 881 myoC-523 - UGGAGAAUCGACACAGU 17 865 myoC-660 - UUCAGAUAGAAUACAGU 17 960 myoC-659 - GAUGCAUUUACUACAGU 17 959 myoC-3177 - AGGUAAGAAUGCAGAGU 17 2923 myoC-3178 + U UCAAGGAAGAGAACGU 17 2924 myoC-639 + UGGGUGUAGGGGUAGGU 17 939 myoC-637 + CUCCUGGGUGUAGGGGU 17 937 myoC-517 - GGAGAACUAGUUUGGGU 17 859 myoC-634 + CGUGGUCUCCUGGGUG U 17 934 myoC-3179 - UCUUCCUUGAACUUUGU 17 2925 myoC-347 + GGCUCUCCU UCAAAAU U 17 733 myoC-334 - AGU UUCUACGUGGAAU U 17 720 myoC-652 - CAAGUU UUCUUGUGAU U 17 952 myoC-335 - GUGGAAUUUGGACACU U 17 721 myoC-611 + GAGG ACAAUGGCACCU U 17 919 myoC-641 + UAGGGGUAGGUGGGCU U 17 941 myoC-33 - ACAGU UCCCGUAUUCUU 17 426 myoC-661 - UCAGAUAGAAUACAGUU 17 961 myoC-608 + AU UCUCUGGGUUCAGU U 17 916 myoC-515 - GAUGUGGAGAACUAGU U 17 857 myoC-3180 + U CAAGG AAG AG AACG U U 17 2926 myoC-653 - AAGUUUUCUUGUGAUU U 17 953 myoC-516 - AUGUGGAGAACUAGUU U 17 858 myoC-501 + AU UU UAUUUCACAAUGUAAA 20 843 myoC-448 + GUUCAGU UUGGAGAGGACAA 20 799 myoC-17 - UACAGCACCGAUGAGGCCAA 20 415 myoC-506 + C AU G U A AC A U G C A AG AG C A A 20 848 myoC-406 - CCUCCAAGCUGUACAGGCAA 20 770 myoC-110 - GGAGGUAGCAAGGCUGAGAA 20 513 myoC-464 + GCAGUAUGUGAACCU UAGAA 20 806 myoC-417 - CCUGGGGGGAGCAGGCUGAA 20 781 myoC-66 + UACUUAUAGCGGU UCUUGAA 20 461 myoC-508 + UAAAUGCUGACAGAAGAUAA 20 850 myoC-495 - AU A A AA AG C A U A AC U U C U A A 20 837 myoC-500 + AAUUU UAU UUCACAAUGUAA 20 842 myoC-484 - UUAAUCCAGAAGGAUGAACA 20 826 myoC-58 - UGCCUGGGACAACUUGAACA 20 456 myoC-10 - GUAUUCUUGGGGUGGCUACA 20 388 myoC-439 + GUAGCUGCUGACGGUGUACA 20 790 myoC-494 - CAU UGCUCUUGCAUGU UACA 20 836 myoC-5 - AUCCCUGGAGCUGGCUACCA 20 407 myoC-419 - AAGGGAGAGCCAGCCAGCCA 20 783 myoC-24 + GUCCGUGGUAGCCAGCUCCA 20 391 myoC-62 + GGCAAAGAGCUUCUUCUCCA 20 448 myoC-377 - UCGGGGAGCCUCUAU UUCCA 20 763 myoC-370 - GCCUAGGCCACUGGAAAGCA 20 756 myoC-109 - GCAGCAGCCAGGAGGUAGCA 20 512 myoC-363 - G AG AAU CGACACAG U UG GCA 20 749 myoC-366 - CUCAUCAGCCAGUUUAUGCA 20 752 myoC-409 - AUGGCAGAAGGAGAUGCUCA 20 773 myoC-70 + GU UCUUGAAUGGGAUGGUCA 20 450 myoC-325 + CCACUCCUGAGAUAGCCAGA 20 711 myoC-483 - CAAGUUUUCAUUAAUCCAGA 20 825 myoC-407 - GCUGUACAGGCAAUGGCAGA 20 771 myoC-3181 - GUGCCACCAGGCUCCAGAGA 20 2927 myoC-322 - GGCUAUCUCAGGAGUGGAGA 20 708 myoC-198 - AGGAGGUAGCAAGGCUGAGA 20 584 myoC-2 - CGAGACAGUGAAGGCUGAGA 20 405 myoC-463 + GGCAG UAUGUGAACCUUAGA 20 805 myoC-509 + ACAAUUCCUGAAUAGU UAGA 20 851 myoC-68 + AUAGCGGUUCUUGAAUGGGA 20 443 myoC-332 + CUCGGACU UCAGUUCCUGGA 20 718 myoC-440 + CAAGG UGCCACAG AUG AUGA 20 791 myoC-416 - UCCUGGGGGGAGCAGGCUGA 20 780 myoC-438 + UGCUGAGGUGUAGCUGCUGA 20 789 myoC-487 - AU UCAGGAAU UGUAGUCUGA 20 829 myoC-1 - GCUGAAUACCGAGACAGUGA 20 398 myoC-71 + UGUGUCAUAAGCAAAGUUGA 20 463 myoC-317 - UCCUGCUUCCCGAAU UUUGA 20 703 myoC-20 + GUGUAGCCACCCCAAGAAUA 20 390 myoC-367 - UAUGCAGGGCUACCCU UCUA 20 753 myoC-358 - GAAACAAU UACUGGCAAGUA 20 744 myoC-493 - GAUUUGGGGCAAAAGCUGUA 20 835 myoC-473 + CACGUGGUCUCCUGGGUGUA 20 815 myoC-442 + CAU UGGCGACUGACUGCUUA 20 793 myoC-488 - UUAUCUUCUGUCAGCAU UUA 20 830 myoC-465 + AAGGGUAGCCCUGCAUAAAC 20 807 myoC-323 - AGGAGUGGAGAGGGAGACAC 20 709 myoC-206 + UGUCUCGGGUCUGGGGACAC 20 592 myoC-53 - GUCAACUUUGCUUAUGACAC 20 439 myoC-369 - UCACAUACUGCCUAGGCCAC 20 755 myoC-371 - CCUAGGCCACUGGAAAGCAC 20 757 myoC-54 - UU UGCUUAUGACACAGGCAC 20 453 myoC-21 + UG U AGCCACCCCAAG AAU AC 20 418 myoC-324 + G A AG A A AC UUAACUUCAUAC 20 710 myoC-405 - GAAAAGCCUCCAAGCUGUAC 20 769 myoC-357 - AG AACAGCAG AAACAAU U AC 20 743 myoC-467 + UGAGGUCAUACU C A A A A ACC 20 809 myoC-396 - AUCUGGAACUCGAACAAACC 20 766 myoC-201 - ACUGCUCGGGCUGUGCCACC 20 587 myoC-3182 - UUUUCUUU UCUGAAU UUACC 20 2928 myoC-360 - GCCCACCUACCCCUACACCC 20 746 myoC-55 - CAUG AU UG ACU ACAACCCCC 20 454 myoC-421 + CCCUUCAGCCUGCUCCCCCC 20 785 myoC-459 + CAGU UCUGGACUCAGCGCCC 20 801 myoC-420 - GAGCCAGCCAGCCAGGGCCC 20 784 myoC-1576 + AGUCAAAGCUGCCUGGGCCC 20 1802 myoC-3 - AAGGCUGAGAAGGAAAUCCC 20 406 myoC-443 + CU UACGGAUGUU UGUCUCCC 20 794 myoC-60 + GACCAUGUUCAAGU UGUCCC 20 441 myoC-418 - GAAGGGAGAGCCAGCCAGCC 20 782 myoC-107 - GAGGUUGGAAAGCAGCAGCC 20 511 myoC-3183 + UUCU UACCU UCUCUGGAGCC 20 2929 myoC-364 - AGU UGGCACGGAUGUCCGCC 20 750 myoC-512 + GGAAAGCAGUCAAAGCUGCC 20 854 myoC-56 - UGGAGAAGAAGCUCUU UGCC 20 455 myoC-482 + CAAACUAGUUCUCCACAUCC 20 824 myoC-207 + U UCUCAGCCUUGCUACCUCC 20 593 myoC-23 + UGUCCGUGGUAGCCAGCUCC 20 420 myoC-410 - AAGGAGAUGCUCAGGGCUCC 20 774 myoC-470 + CGAU UCUCCACGUGG UCUCC 20 812 myoC-61 + AGGCAAAGAGCUUCU UCUCC 20 458 myoC-316 - UU UGGACACUU UGGCCUUCC 20 702 myoC-331 + UUAGCUCGGACUUCAGUUCC 20 717 myoC-376 - CUCGGGGAGCCUCUAU UUCC 20 762 myoC-329 + UCCUUCAAAAUUCGGGAAGC 20 715 myoC-13 - GACUUGGCUGUGGAUGAAGC 20 400 myoC-415 - UCAGGGCUCCUGGGGGGAGC 20 779 myoC-4 - GAGAAGGAAAUCCCUGGAGC 20 399 myoC-1577 + AAAGCUGCCUGGGCCCUGGC 20 1803 myoC-1578 + CUGCCUGGGCCCUGGCUGGC 20 1804 myoC-502 + AUCUUACUUAUAUUCGAUGC 20 844 myoC-365 - CCUCAUCAGCCAGUUUAUGC 20 751 myoC-395 - CAAACUGAACCCAGAGAAUC 20 765 myoC-318 - AUUU UGAAGGAGAGCCCAUC 20 704 myoC-374 - ACGGGUGCUGUGGUGUACUC 20 760 myoC-14 - CUGUGGAUGAAGCAGGCCUC 20 413 myoC-496 - AGGAAGCAGAAUAGCUCCUC 20 838 myoC-408 - AAUGGCAGAAGGAGAUGCUC 20 772 myoC-200 - CCAGACCCGAGACACUGCUC 20 586 myoC-319 - AGAGCCCAUCUGGCUAUCUC 20 705 myoC-202 + CACAGCCCGAGCAGUGUCUC 20 588 myoC-444 + UGUUCGAGUUCCAGAU UCUC 20 795 myoC-3184 + CUCUGCAU UCUUACCUUCUC 20 2930 myoC-203 + CCCGAGCAGUGUCUCGGGUC 20 589 myoC-69 + GGUUCUUGAAUGGGAUGGUC 20 449 myoC-328 + UGGGCUCUCCU UCAAAAUUC 20 714 myoC-485 - UGGUCACCAUCUAACUAUUC 20 827 myoC-510 + GGUGACCAUGUUCAUCCUUC 20 852 myoC-26 + CUCAUAUCU UAUGACAGUUC 20 422 myoC-507 + AUGCAAGAGCAAUGGUU UUC 20 849 myoC-111 - GAGGUAGCAAGGCUGAGAAG 20 514 myoC-19 + CGGUGCUG UAAAUGACCCAG 20 417 myoC-503 + U UAUAUUCGAUGCUGGCCAG 20 845 myoC-63 + GCAAAGAGCUUCUUCUCCAG 20 442 myoC-461 + ACAGCACCCGUGCUUUCCAG 20 803 myoC-3185 - GAGAAGGUAAGAAUGCAGAG 20 2931 myoC-320 - CCAUCUGGCUAUCUCAGGAG 20 706 myoC-321 - UGGCUAUCUCAGGAGUGGAG 20 707 myoC-447 + UCUCUGGG UUCAGUUUGGAG 20 798 myoC-481 + UCUGCUGUUCUCAGCGUGAG 20 823 myoC-460 + ACUCAGCGCCCUGGAAAUAG 20 802 myoC-65 + UCAUGCUGCUGUACUUAUAG 20 460 myoC-474 + ACGUGGUCUCCUGGGUGUAG 20 816 myoC-361 - CCUACACCCAGGAGACCACG 20 747 myoC-469 + AACUGUGUCGAU UCUCCACG 20 811 myoC-313 - CUU UUAAUGCAGU UUCUACG 20 699 myoC-22 + AAGAAUACGGGAACUGUCCG 20 419 myoC-375 - CGGGUGCUGUGGUGUACUCG 20 761 myoC-108 - G U U G G A A AG C AG C AG CC AG G 20 480 myoC-64 + CAAAGAGCUUCUUCUCCAGG 20 459 myoC-476 + CUCCUGGGUGUAGGGGUAGG 20 818 myoC-9 - CAGU UCCCGUAUUCUUGGGG 20 410 myoC-414 - AGAUGCUCAGGGCUCCUGGG 20 778 myoC-3186 - AGGUAAGAAUGCAGAGUGGG 20 2932 myoC-468 + GGUCAUACUCAAAAACCUGG 20 810 myoC-3187 + UUACCUUCUCUGGAGCCUGG 20 2933 myoC-413 - GAGAUGCUCAGGGCUCCUGG 20 777 myoC-3188 - AAGGUAAGAAUGCAGAGUGG 20 2934 myoC-423 + CCAU UGCCUGUACAGCUUGG 20 787 myoC-16 - GGUCAUUUACAGCACCGAUG 20 389 myoC-353 - UUUCUGAAUU UACCAGGAUG 20 739 myoC-466 + CCUGCAUAAACUGGCUGAUG 20 808 myoC-412 - GGAGAUGCUCAGGGCUCCUG 20 776 myoC-12 - CACGGACAU UGACUUGGCUG 20 412 myoC-437 + GU UGACGGUAGCAUCUGCUG 20 788 myoC-372 - ACUGGAAAGCACGGGUGCUG 20 758 myoC-398 - GCCAAUGCCU UCAUCAUCUG 20 768 myoC-486 - UAUUCAGGAAUUGUAGUCUG 20 828 myoC-205 + CGAGCAGUGUCUCGGGUCUG 20 591 myoC-3189 - GAAGGUAAGAAUGCAGAGUG 20 2935 myoC-359 - UUACUGGCAAGUAUGGUGUG 20 745 myoC-504 + AGAAGUUAUGCU UUUUAU UG 20 846 myoC-480 + UGUAGGGGUAGGUGGGCUUG 20 822 myoC-505 + AUGCUUUU UAUUGUGGCUUG 20 847 myoC-385 - GGACAGU UCCCGUAUUCUUG 20 764 myoC-492 - UCAAGUU UUCUUGUGAUUUG 20 834 myoC-3190 - GUUCUCU UCCUUGAACUUUG 20 2936 myoC-67 + ACU UAUAGCGGUUCU UGAAU 20 462 myoC-441 + GCCACAGAUGAUGAAGGCAU 20 792 myoC-18 + AAUGGCACCU UUGGCCUCAU 20 416 myoC-326 + CACUCCUGAGAUAGCCAGAU 20 712 myoC-489 - UAUCUUCUG UCAGCAUU UAU 20 831 myoC-511 + CUUCUGGAU UAAUGAAAACU 20 853 myoC-11 - UGGCUACACGGACAUUGACU 20 411 myoC-373 - CACGGGUGCUGUGGUG UACU 20 759 myoC-397 - UCUGGAACUCGAACAAACCU 20 767 myoC-462 + CCCGUGCUU UCCAGUGGCCU 20 804 myoC-368 - CUAAGGUUCACAUACUGCCU 20 754 myoC-513 + GAAAGCAGUCAAAGCUGCCU 20 855 myoC-57 - GGAGAAGAAGCUCUUUGCCU 20 440 myoC-411 - AGGAGAUGCUCAGGGCUCCU 20 775 myoC-471 + GAUUCUCCACGUGGUCUCCU 20 813 myoC-422 + CUGCCAUUGCCUGUACAGCU 20 786 myoC-330 + AGCAGGAACUUCAGUUAGCU 20 716 myoC-478 + GGUGUAGGGGUAGGUGGGCU 20 820 myoC-199 - CCCAGACCCGAGACACUGCU 20 585 myoC-59 + CUUGGAGGCUUUUCACAUCU 20 457 myoC-15 - UGUGGAUGAAGCAGGCCUCU 20 414 myoC-445 + GUUCGAGUUCCAGAUUCUCU 20 796 myoC-204 + CCGAGCAGUGUCUCGGGUCU 20 590 myoC-25 + CUUCUCAGCCUUCACUGUCU 20 421 myoC-112 + GCACAGCCCGAGCAGUGUCU 20 481 myoC-6 - ACGGACAGUUCCCGUAUUCU 20 408 myoC-362 - ACGUGGAGAAUCGACACAGU 20 748 myoC-498 - UGCUUCAGAUAGAAUACAGU 20 840 myoC-497 - UAAGAUGCAUUUACUACAGU 20 839 myoC-3191 - AGAAGGUAAGAAUGCAGAGU 20 2937 myoC-3192 + AAGUUCAAGGAAGAGAACGU 20 2938 myoC-477 + UCCUGGGUGUAGGGGUAGGU 20 819 myoC-475 + GGUCUCCUGGGUGUAGGGGU 20 817 myoC-356 - UGUGGAGAACUAGUUUGGGU 20 742 myoC-472 + CCACGUGGUCUCCUGGGUGU 20 814 myoC-3193 - UUCUCUUCCUUGAACUUUGU 20 2939 myoC-327 + AUGGGCUCUCCUUCAAAAUU 20 713 myoC-314 - UGCAGUUUCUACGUGGAAUU 20 700 myoC-490 - GUUCAAGUUUUCUUGUGAUU 20 832 myoC-315 - UACGUGGAAUUUGGACACUU 20 701 myoC-449 + GGAGAGGACAAUGGCACCUU 20 800 myoC-479 + GUGUAGGGGUAGGUGGGCUU 20 821 myoC-7 - CGGACAGUUCCCGUAUUCUU 20 409 myoC-499 - GCUUCAGAUAGAAUACAGUU 20 841 myoC-446 + CAGAUUCUCUGGGUUCAGUU 20 797 myoC-354 - CAGGAUGUGGAGAACUAGUU 20 740 myoC-3194 + AG U U CAAGG AAG AG AACG U U 20 2940 myoC-491 - UUCAAGUUUUCUUGUGAUUU 20 833 myoC-355 - AGGAUGUGGAGAACUAGUUU 20 741
Table 7 A provides exemplary targeting domains for knocking out the MYOC gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), have a high level of orthogonality, start with a 5'G, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through
complementary base pairing. Any of the targeting domains in the Table lean be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 7A
Figure imgf000237_0001
Table 7B provides exemplary targeting domains for knocking out the MYOC gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), have a high level of orthogonality and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 7B
2nd Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-3212 + UGGCCUCCAGGUCUAAGCG 19 2958 myoC-3213 + UGGUGGCCUCCAGGUCUAAGCG 22 2959 myoC-3214 + U UGGUGGCCUCCAGGUCUAAGCG 23 2960 myoC-3215 + UUUGGUGGCCUCCAGGUCUAAGCG 24 2961 myoC-3216 + CUGGUCCCGCUCCCGCCU 18 2962 myoC-1690 + AGCUGGUCCCGCUCCCGCCU 20 1946 myoC-3217 + CAGCUGGUCCCGCUCCCGCCU 21 2963 myoC-3218 + CCAGCUGGUCCCGCUCCCGCCU 22 2964 myoC-3219 + UCCAGCUGG UCCCGCUCCCGCCU 23 2965 myoC-3220 + UUCCAGCUGGUCCCGCUCCCGCCU 24 2966 myoC-3221 + AGGCAGUCUCCAACUCUCUGGU 22 2967 myoC-3222 + UAGGCAGUCUCCAACUCUCUGGU 23 2968 myoC-3223 + UGCUGUCUCUCUGUAAGUU 19 2969 myoC-1676 + CUGCUGUCUCUCUGUAAGUU 20 1937 myoC-3224 + UGCUGCUGUCUCUCUGUAAGUU 22 2970 myoC-3225 - AGCUGGAAACCCAAACCA 18 2971 myoC-3226 - CAGCUGGAAACCCAAACCA 19 2972 myoC-1635 - CCAGCUGG A A ACCC A A ACC A 20 1904 myoC-3227 - ACCAGCUGGAAACCCAAACCA 21 2973 myoC-3228 - UCAGUGUGGCCAGUCCCA 18 2974 myoC-3229 - UUCAGUGUGGCCAGUCCCA 19 2975 myoC-1604 - CUUCAGUGUGGCCAGUCCCA 20 1884 myoC-3230 - CCUUCAGUGUGGCCAGUCCCA 21 2976 myoC-3231 - ACCUUCAGUGUGGCCAGUCCCA 22 2977 myoC-3232 - UACCUUCAGUGUGGCCAGUCCCA 23 2978 myoC-3233 - AUACCUUCAGUGUGGCCAGUCCCA 24 2979 myoC-3234 - CUCAGGAAGGCCAAUGAC 18 2980 myoC-1603 - AGCUCAGGAAGGCCAAUGAC 20 1883 myoC-3235 - CAG CU CAG G AAG G CC AA U G AC 21 2981 myoC-3236 - U C AG C U C AG G A AG G CCA A U G AC 22 2982 myoC-3237 - CUCAGCUCAGGAAGGCCAAUGAC 23 2983 myoC-3238 - CUUCUGGCCUGCCUGGUG 18 2984 myoC-171 - UGCUUCUGGCCUGCCUGGUG 20 557 myoC-3239 - CGACUAAGGCAAGAAAAU 18 2985 myoC-1648 - AG CG AC U A AG G C A AG A A A A U 20 1914 myoC-3240 - A AG CG AC U A AG G C A AG A A A AU 21 2986 myoC-3241 - AGAAGCGACUAAGGCAAGAAAAU 23 2987 myoC-3242 - A AG A AG CG AC U A AG G C A AG A A A A U 24 2988
Table 7C provides exemplary targeting domains for knocking out the MYOC gene selected according to the third tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 7C
Figure imgf000239_0001
Table 7D provides exemplary targeting domains for knocking out the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 7D
4th Tier DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-3267 + UCAUUGGGACUGGCCACA 18 3013 myoC-3268 + UUCAUUGGGACUGGCCACA 19 3014 myoC-1671 + AUUCAUUGGGACUGGCCACA 20 1933 myoC-3269 + GAU UCAUUGGGACUGGCCACA 21 3015 myoC-3270 + GGAU UCAUUGGGACUGGCCACA 22 3016 myoC-3271 + UGGAU UCAUUGGGACUGGCCACA 23 3017 myoC-3272 + CUGGAU UCAUUGGGACUGGCCACA 24 3018 myoC-3273 + GGUGGAGGAGGCUCUCCA 18 3019 myoC-3274 + UGGUGGAGGAGGCUCUCCA 19 3020 myoC-223 + U UGGUGGAGGAGGCUCUCCA 20 609 myoC-3275 + AU UGGUGGAGGAGGCUCUCCA 21 3021 myoC-3276 + AAU UGGUGGAGGAGGCUCUCCA 22 3022 myoC-3277 + CAAU UGGUGGAGGAGGCUCUCCA 23 3023 myoC-3278 + UCAAUUGGUGGAGGAGGCUCUCCA 24 3024 myoC-3279 + A AG C U G C AG C A ACG U G C A 18 3025 myoC-3280 + AAAGCUGCAGCAACGUGCA 19 3026 myoC-1666 + C A A AG C U G C AG C A ACG U G C A 20 1928 myoC-3281 + CCA A AG CU G C AG C A ACG U G C A 21 3027 myoC-3282 + CCCAA AG CU G CAG CA ACG U GC A 22 3028 myoC-3283 + G CCC A A AG C U G C AG C A ACG U G C A 23 3029 myoC-3284 + GGCCCAAAGCUGCAGCAACGUGCA 24 3030 myoC-3285 + UCUGGGCAGCUGGAU UCA 18 3031 myoC-3286 + CUCUGGGCAGCUGGAUUCA 19 3032 myoC-1673 + GCUCUGGGCAGCUGGAUUCA 20 1934 myoC-3287 + UGCUCUGGGCAGCUGGAUUCA 21 3033 myoC-3288 + CUGCUCUGGGCAGCUGGAU UCA 22 3034 myoC-3289 + UCUGCUCUGGGCAGCUGGAUUCA 23 3035 myoC-3290 + CUCUGCUCUGGGCAGCUGGAUUCA 24 3036 myoC-3291 + UGGUGGAGGAGGCUCUCC 18 3037 myoC-3292 + U UGGUGGAGGAGGCUCUCC 19 3038 myoC-222 + AU UGGUGGAGGAGGCUCUCC 20 608 myoC-3293 + AAU UGGUGGAGGAGGCUCUCC 21 3039 myoC-3294 + CAAU UGGUGGAGGAGGCUCUCC 22 3040 myoC-3295 + UCAAU UGGUGGAGGAGGCUCUCC 23 3041 myoC-3296 + GUCAAUUGGUGGAGGAGGCUCUCC 24 3042 myoC-3297 + AGCCCCUCCUGGGUCUCC 18 3043 myoC-3298 + CAGCCCCUCCUGGG UCUCC 19 3044 myoC-119 + GCAGCCCCUCCUGGGUCUCC 20 518 myoC-3299 + UGCAGCCCCUCCUGGGUCUCC 21 3045 myoC-3300 + CUGCAGCCCCUCCUGGGUCUCC 22 3046 myoC-3301 + UCUGCAGCCCCUCCUGGGUCUCC 23 3047 myoC-3302 + CUCUGCAGCCCCUCCUGGGUCUCC 24 3048 myoC-3303 + AUCCCACACCAGGCAGGC 18 3049 myoC-3304 + CAU CCCACACCAG G CAG G C 19 3050 myoC-1668 + ACA U CCCACACCAG G CAG G C 20 1930 myoC-3305 + CACA U CCCACACCAG G CAGG C 21 3051 myoC-3306 + CCAC AU CCCACACCAG GC AG G C 22 3052 myoC-3307 + CCCACAUCCCACACCAGGCAGGC 23 3053 myoC-3308 + CCCCACAUCCCACACCAGGCAGGC 24 3054 myoC-3309 + GCUUGGUGAGGCUUCCUC 18 3055 myoC-3310 + GGCU UGGUGAGGCUUCCUC 19 3056 myoC-2356 + AGGCU UGGUGAGGCUUCCUC 20 2410 myoC-3311 + GAGGCUUGGUGAGGCU UCCUC 21 3057 myoC-3312 + AGAGGCUUGGUGAGGCUUCCUC 22 3058 myoC-3313 + CAGAGGCU UGGUGAGGCUUCCUC 23 3059 myoC-3314 + GCAGAGGCU UGGUGAGGCUUCCUC 24 3060 myoC-3315 + UCGCUUCUUCUCU UCCUC 18 3061 myoC-3316 + GUCGCUUCUUCUCUUCCUC 19 3062 myoC-1696 + AGUCGCUUCU UCUCUUCCUC 20 1950 myoC-3317 + UAGUCGCUUCU UCUCU UCCUC 21 3063 myoC-3318 + UUAGUCGCUUCUUCUCUUCCUC 22 3064 myoC-3319 + CUUAGUCGCUUCUUCUCUUCCUC 23 3065 myoC-3320 + CCUUAGUCGCUUCU UCUCUUCCUC 24 3066 myoC-3321 + UUGGUGGAGGAGGCUCUC 18 3067 myoC-3322 + AU UGG UGGAGGAGGCUCUC 19 3068 myoC-1682 + AAUUGGUGGAGGAGGCUCUC 20 1941 myoC-3323 + CAAUUGGUGGAGGAGGCUCUC 21 3069 myoC-3324 + UCAAU UGGUGGAGGAGGCUCUC 22 3070 myoC-3325 + GUCAAUUGGUGGAGGAGGCUCUC 23 3071 myoC-3326 + GGUCAAUUGGUGGAGGAGGCUCUC 24 3072 myoC-3327 + CAGCCCCUCCUGGGUCUC 18 3073 myoC-3328 + GCAGCCCCUCCUGGGUCUC 19 3074 myoC-1688 + UGCAGCCCCUCCUGGGUCUC 20 1944 myoC-3329 + CUGCAGCCCCUCCUGGGUCUC 21 3075 myoC-3330 + UCUGCAGCCCCUCCUGGGUCUC 22 3076 myoC-3331 + CUCUGCAGCCCCUCCUGGGUCUC 23 3077 myoC-3332 + CCUCUGCAGCCCCUCCUGGGUCUC 24 3078 myoC-3333 + CUCCAGAACUGACUUGUC 18 3079 myoC-3334 + CCUCCAGAACUGACUUGUC 19 3080 myoC-1695 + UCCUCCAGAACUGACUUGUC 20 1949 myoC-3335 + U UCCUCCAGAACUGACU UGUC 21 3081 myoC-3336 + CUUCCUCCAGAACUGACUUGUC 22 3082 myoC-3337 + UCUUCCUCCAGAACUGACU UGUC 23 3083 myoC-3338 + CUCU UCCUCCAGAACUGACUUGUC 24 3084 myoC-3339 + CUCUGGUCAUUGGCCUUC 18 3085 myoC-3340 + ACUCUGGUCAUUGGCCU UC 19 3086 myoC-1670 + CACUCUGGUCAUUGGCCUUC 20 1932 myoC-3341 + CCACUCUGGUCAU UGGCCUUC 21 3087 myoC-3342 + GCCACUCUGGUCAUUGGCCU UC 22 3088 myoC-3343 + GGCCACUCUGGUCAU UGGCCUUC 23 3089 myoC-3344 + CGGCCACUCUGGUCAUUGGCCUUC 24 3090 myoC-3345 + CUGCAGCAACGUGCACAG 18 3091 myoC-3346 + GCUGCAGCAACGUGCACAG 19 3092 myoC-1665 + AGCUGCAGCAACGUGCACAG 20 1927 myoC-3347 + AAGCU G CAG CAACG U G C AC AG 21 3093 myoC-3348 + AAAGCUGCAGCAACGUGCACAG 22 3094 myoC-3349 + C A A AG C U G C AG CAACG U G C AC AG 23 3095 myoC-3350 + CCA A AG C U G C AG C A ACG U G C AC AG 24 3096 myoC-3351 + GCAGGCCAGAAGCAGCAG 18 3097 myoC-3352 + GGCAGGCCAGAAGCAGCAG 19 3098 myoC-1667 + AGGCAGGCCAGAAGCAGCAG 20 1929 myoC-3353 + C AG G CAG G CC AG A AG CAG CAG 21 3099 myoC-3354 + CCAGGCAGGCCAGAAGCAGCAG 22 3100 myoC-3355 + ACC AG G C AG G CC AG A AG C AG C AG 23 3101 myoC-3356 + CACCAGGCAGGCCAGAAG CAG CAG 24 3102 myoC-3357 + GUCAUUGGCCUUCCUGAG 18 3103 myoC-3358 + GGUCAUUGGCCUUCCUGAG 19 3104 myoC-1669 + UGGUCAUUGGCCUUCCUGAG 20 1931 myoC-3359 + CUGGUCAUUGGCCU UCCUGAG 21 3105 myoC-3360 + UCUGGUCAU UGGCCU UCCUGAG 22 3106 myoC-3361 + CUCUGGUCAUUGGCCUUCCUGAG 23 3107 myoC-3362 + ACUCUGGUCAU UGGCCU UCCUGAG 24 3108 myoC-3363 + GCUCUCCAGGGAGCUGAG 18 3109 myoC-3364 + GGCUCUCCAGGGAGCUGAG 19 3110 myoC-1678 + AGGCUCUCCAGGGAGCUGAG 20 1939 myoC-3365 + GAGGCUCUCCAGGGAGCUGAG 21 3111 myoC-3366 + GG AGGCUCUCCAGGGAGCUGAG 22 3112 myoC-3367 + AGGAGGCUCUCCAGGGAGCUGAG 23 3113 myoC-3368 + GAGGAGGCUCUCCAGGGAGCUGAG 24 3114 myoC-3369 + CAGAACUGACUUGUCUCG 18 3115 myoC-3370 + CCAGAACUGACUUGUCUCG 19 3116 myoC-1693 + UCCAGAACUGACU UGUCUCG 20 1948 myoC-3371 + CUCCAGAACUGACU UGUCUCG 21 3117 myoC-3372 + CCUCCAGAACUGACUUGUCUCG 22 3118 myoC-3373 + UCCUCCAGAACUGACUUGUCUCG 23 3119 myoC-3374 + U UCCUCCAGAACUGACUUGUCUCG 24 3120 myoC-3375 + AGAACUGACUUGUCUCGG 18 3121 myoC-3376 + CAGAACUGACUUGUCUCGG 19 3122 myoC-209 + CCAGAACUGACUUGUCUCGG 20 595 myoC-3377 + UCCAGAACUGACUUGUCUCGG 21 3123 myoC-3378 + CUCCAGAACUGACUUGUCUCGG 22 3124 myoC-3379 + CCUCCAGAACUGACUUGUCUCGG 23 3125 myoC-3380 + UCCUCCAGAACUGACUUGUCUCGG 24 3126 myoC-3381 + UCCAAGGUCAAUUGGUGG 18 3127 myoC-3382 + GUCCAAGGUCAAU UGGUGG 19 3128 myoC-121 + GG UCCAAGGUCAAUUGGUGG 20 520 myoC-3383 + UGGUCCAAGGUCAAU UGGUGG 21 3129 myoC-3384 + CUGG UCCAAGGUCAAUUGGUGG 22 3130 myoC-3385 + CCUGGUCCAAGGUCAAU UGGUGG 23 3131 myoC-3386 + GCCUGGUCCAAGGUCAAUUGGUGG 24 3132 myoC-3387 + UGGUCCAAGGUCAAUUGG 18 3133 myoC-3388 + CUGGUCCAAGGUCAAUUGG 19 3134 myoC-220 + CCUGGUCCAAGGUCAAU UGG 20 606 myoC-3389 + GCCUGGUCCAAGGUCAAUUGG 21 3135 myoC-3390 + AGCCUGGUCCAAGGUCAAUUGG 22 3136 myoC-3391 + CAGCCUGGU CCA AG G U C A A U U G G 23 3137 myoC-3392 + GCAGCCUGGUCCAAGGUCAAUUGG 24 3138 myoC-3393 + GUCCAAGGUCAAUUGG UG 18 3139 myoC-3394 + GGUCCAAGGUCAAUUGGUG 19 3140 myoC-1684 + UGGUCCAAGGUCAAU UGG UG 20 1942 myoC-3395 + CUGGUCCAAGGUCAAUUGGUG 21 3141 myoC-3396 + CCUGGUCCAAGGUCAAU UGGUG 22 3142 myoC-3397 + GCCUGGUCCAAGGUCAAUUGGUG 23 3143 myoC-3398 + AGCCUGGUCCAAGGUCAAUUGGUG 24 3144 myoC-3399 + CUGGUCCAAGGUCAAUUG 18 3145 myoC-3400 + CCUGGUCCAAGGUCAAU UG 19 3146 myoC-1686 + GCCUGGUCCAAGGUCAAUUG 20 1943 myoC-3401 + AGCCUGGUCCAAGGUCAAUUG 21 3147 myoC-3402 + CAGCCUGGU CCA AG G U C A A U U G 22 3148 myoC-3403 + GCAGCCUGGUCCAAGGUCAAUUG 23 3149 myoC-3404 + GGCAGCCUGGUCCAAGGUCAAU UG 24 3150 myoC-3405 + CACAGAAGAACCUCAUUG 18 3151 myoC-3406 + GCACAG AAG AACCUCAU UG 19 3152 myoC-1664 + UGCACAGAAGAACCUCAUUG 20 1926 myoC-3407 + GUGCACAG AAG AACCUCAU UG 21 3153 myoC-3408 + CGUGCACAGAAGAACCUCAU UG 22 3154 myoC-3409 + ACG UGCACAGAAGAACCUCAUUG 23 3155 myoC-3410 + AACG UGCACAGAAGAACCUCAUUG 24 3156 myoC-3411 + CCUCAUUGCAGAGGCUUG 18 3157 myoC-3412 + ACCUCAU UGCAG AGGCU UG 19 3158 myoC-1663 + AACCUCAUUGCAGAGGCU UG 20 1925 myoC-3413 + G AACCUCAU UGCAG AGGCU UG 21 3159 myoC-3414 + AG AACCUCAUUGCAGAGGCUUG 22 3160 myoC-3415 + AAG AACCUCAUUGCAGAGGCUUG 23 3161 myoC-3416 + G AAG AACCUCAUUGCAGAGGCUUG 24 3162 myoC-3417 + CUGGGCAGCUGGAUUCAU 18 3163 myoC-3418 + UCUGGGCAGCUGGAUUCAU 19 3164 myoC-231 + CUCUGGGCAGCUGGAUUCAU 20 617 myoC-3419 + GCUCUGGGCAGCUGGAUUCAU 21 3165 myoC-3420 + UGCUCUGGGCAGCUGGAUUCAU 22 3166 myoC-3421 + CUGCUCUGGGCAGCUGGAUUCAU 23 3167 myoC-3422 + UCUGCUCUGGGCAGCUGGAUUCAU 24 3168 myoC-3423 + GGCU UGGUGAGGCUUCCU 18 3169 myoC-3424 + AGGCUUGGUGAGGCUUCCU 19 3170 myoC-2357 + GAGGCUUGGUGAGGCU UCCU 20 2411 myoC-3425 + AGAGGCU UGGUGAGGCUUCCU 21 3171 myoC-3426 + CAGAGGCUUGGUGAGGCUUCCU 22 3172 myoC-3427 + GCAGAGGCUUGGUGAGGCUUCCU 23 3173 myoC-3428 + UGCAGAGGCUUGGUGAGGCUUCCU 24 3174 myoC-3429 + ACAUGGCCUGGCUCUGCU 18 3175 myoC-3430 + GACAUGGCCUGGCUCUGCU 19 3176 myoC-1675 + UGACAUGGCCUGGCUCUGCU 20 1936 myoC-3431 + CUGACAUGGCCUGGCUCUGCU 21 3177 myoC-3432 + ACUGACAUGGCCUGGCUCUGCU 22 3178 myoC-3433 + GACUGACAUGGCCUGGCUCUGCU 23 3179 myoC-3434 + UGACUGACAUGGCCUGGCUCUGCU 24 3180 myoC-3435 + UCCAGAACUGACU UGUCU 18 3181 myoC-3436 + CUCCAGAACUGACUUGUCU 19 3182 myoC-208 + CCUCCAGAACUGACUUGUCU 20 594 myoC-3437 + UCCUCCAGAACUGACUUGUCU 21 3183 myoC-3438 + UUCCUCCAGAACUGACU UGUCU 22 3184 myoC-3439 + CUUCCUCCAGAACUGACUUGUCU 23 3185 myoC-3440 + UCU UCCUCCAGAACUGACUUGUCU 24 3186 myoC-3441 - AGCGACUAAGGCAAGAAA 18 3187 myoC-3442 - AAGCGACUAAGGCAAGAAA 19 3188 myoC-1647 - GAAGCGACUAAGGCAAGAAA 20 1913 myoC-3443 - AG AAGCGACUAAGGCAAGAAA 21 3189 myoC-3444 - AAG AAGCGACUAAGGCAAGAAA 22 3190 myoC-3445 - GAAG AAGCGACUAAGGCAAGAAA 23 3191 myoC-3446 - AGAAGAAGCGACUAAGGCAAGAAA 24 3192 myoC-3447 - AAGUCAGU UCUGGAGGAA 18 3193 myoC-3448 - CAAGUCAGUUCUGGAGGAA 19 3194 myoC-1644 - ACAAGUCAGUUCUGGAGGAA 20 1910 myoC-3449 - GACAAGUCAGU UCUGGAGGAA 21 3195 myoC-3450 - AGACAAGUCAGUUCUGGAGGAA 22 3196 myoC-3451 - GAGACAAGUCAGUUCUGGAGGAA 23 3197 myoC-3452 - CGAGACAAGUCAGU UCUGGAGGAA 24 3198 myoC-3453 - AG UCAU CCAU AACU U ACA 18 3199 myoC-3454 - CAGUCAUCCAUAACUUACA 19 3200 myoC-1608 - UCAGUCAUCCAUAACUUACA 20 1888 myoC-3455 - GUCAGUCAUCCAUAACU UACA 21 3201 myoC-3456 - UGUCAGUCAUCCAUAACUUACA 22 3202 myoC-3457 - AUGUCAGUCAUCCAUAACUUACA 23 3203 myoC-3458 - CAUGUCAGUCAUCCAUAACU UACA 24 3204 myoC-3459 - GACCCAGGAGGGGCUGCA 18 3205 myoC-3460 - AGACCCAGGAGGGGCUGCA 19 3206 myoC-1622 - GAGACCCAGGAGGGGCUGCA 20 1897 myoC-3461 - GG AGACCCAGGAGGGGCUGCA 21 3207 myoC-3462 - AGGAGACCCAGGAGGGGCUGCA 22 3208 myoC-3463 - CAGGAGACCCAGGAGGGGCUGCA 23 3209 myoC-3464 - CCAGGAGACCCAGGAGGGGCUGCA 24 3210 myoC-3465 - CCUCACCAAGCCUCUGCA 18 3211 myoC-3466 - GCCUCACCAAGCCUCUGCA 19 3212 myoC-1592 - AGCCUCACCAAGCCUCUGCA 20 1876 myoC-3467 - AAGCCUCACCAAGCCUCUGCA 21 3213 myoC-3468 - GAAGCCUCACCAAGCCUCUGCA 22 3214 myoC-3469 - GGAAGCCUCACCAAGCCUCUGCA 23 3215 myoC-3470 - AGGAAGCCUCACCAAGCCUCUGCA 24 3216 myoC-3471 - CCCAGGAGGGGCUGCAGA 18 3217 myoC-3472 - ACCCAGGAGGGGCUGCAGA 19 3218 myoC-99 - GACCCAGGAGGGGCUGCAGA 20 504 myoC-3473 - AGACCCAGGAGGGGCUGCAGA 21 3219 myoC-3474 - GAGACCCAGGAGGGGCUGCAGA 22 3220 myoC-3475 - GG AG ACCCAGGAGGGGCUGCAGA 23 3221 myoC-3476 - AGGAGACCCAGGAGGGGCUGCAGA 24 3222 myoC-3477 - GGGCACCCUGAGGCGGGA 18 3223 myoC-3478 - UGGGCACCCUGAGGCGGGA 19 3224 myoC-1630 - CUGGGCACCCUGAGGCGGGA 20 1901 myoC-3479 - GCUGGGCACCCUGAGGCGGGA 21 3225 myoC-3480 - AGCUGGGCACCCUGAGGCGGGA 22 3226 myoC-3481 - GAGCUGGGCACCCUGAGGCGGGA 23 3227 myoC-3482 - GGAGCUGGGCACCCUGAGGCGGGA 24 3228 myoC-3483 - UCAGUCAUCCAUAACUUA 18 3229 myoC-3484 - GUCAGUCAUCCAUAACU UA 19 3230 myoC-1607 - UGUCAGUCAUCCAUAACUUA 20 1887 myoC-3485 - AUGUCAGUCAUCCAUAACU UA 21 3231 myoC-3486 - CAUGUCAGUCAUCCAUAACUUA 22 3232 myoC-3487 - CCAUGUCAGUCAUCCAUAACUUA 23 3233 myoC-3488 - GCCAUGUCAGUCAUCCAUAACU UA 24 3234 myoC-3489 - CCAGCUGGAAACCCAAAC 18 3235 myoC-3490 - ACCAGCUGGAAACCCAAAC 19 3236 myoC-1634 - GACCAGCU G G AAACCCAA AC 20 1903 myoC-3491 - GGACCAGCU G G AAACCCAA AC 21 3237 myoC-3492 - GGGACCAGCUGGAAACCCAAAC 22 3238 myoC-3493 - CGGG ACCAGCUGGAAACCCAAAC 23 3239 myoC-3494 - GCGGG ACCAGCUGGAAACCCAAAC 24 3240 myoC-3495 - AGCACCCAACGCUUAGAC 18 3241 myoC-3496 - CAGCACCCAACGCUUAGAC 19 3242 myoC-1609 - GCAGCACCCAACGCU U AG AC 20 1889 myoC-3497 - AGCAGCACCCAACGCUUAGAC 21 3243 myoC-3498 - CAGCAGCACCCAACGCU UAGAC 22 3244 myoC-3499 - ACAGCAGCACCCAACGCU U AG AC 23 3245 myoC-3500 - G ACAG CAG CACCCA ACG CU U AG AC 24 3246 myoC-3501 - CAGAGGGAGCUGGGCACC 18 3247 myoC-3502 - GCAGAGGGAGCUGGGCACC 19 3248 myoC-1626 - UGCAGAGGGAGCUGGGCACC 20 1899 myoC-3503 - CUGCAGAGGGAGCUGGGCACC 21 3249 myoC-3504 - GCUGCAGAGGGAGCUGGGCACC 22 3250 myoC-3505 - GGCUGCAGAGGGAGCUGGGCACC 23 3251 myoC-3506 - GGGCUGCAGAGGGAGCUGGGCACC 24 3252 myoC-3507 - GCCAGGCCCCAGGAGACC 18 3253 myoC-3508 - UGCCAGGCCCCAGGAGACC 19 3254 myoC-1617 - CUGCCAGGCCCCAGGAGACC 20 1894 myoC-3509 - GCUGCCAGGCCCCAGGAGACC 21 3255 myoC-3510 - GGCUGCCAGGCCCCAGGAGACC 22 3256 myoC-3511 - AGGCUGCCAGGCCCCAGGAGACC 23 3257 myoC-3512 - CAGGCUGCCAGGCCCCAGGAGACC 24 3258 myoC-3513 - GCACCCAACGCU U AG ACC 18 3259 myoC-3514 - AGCACCCAACGCU U AG ACC 19 3260 myoC-179 - CAGCACCCAACGCU U AG ACC 20 565 myoC-3515 - GCAGCACCCAACGCUUAGACC 21 3261 myoC-3516 - AGCAGCACCCAACGCUUAGACC 22 3262 myoC-3517 - CAGCAGCACCCAACGCUUAGACC 23 3263 myoC-3518 - ACAGCAGCACCCAACGCUUAGACC 24 3264 myoC-3519 - CUCCUCCACCAAU UGACC 18 3265 myoC-3520 - CCUCCUCCACCAAUUGACC 19 3266 myoC-1614 - GCCUCCUCCACCAAU UG ACC 20 1892 myoC-3521 - AGCCUCCUCCACCAAUUGACC 21 3267 myoC-3522 - GAGCCUCCUCCACCAAU UG ACC 22 3268 myoC-3523 - AG AGCCU CCU CCACCAAU U G ACC 23 3269 myoC-3524 - GAGAGCCUCCUCCACCAAUUGACC 24 3270 myoC-3525 - CCAGGCCCCAGGAGACCC 18 3271 myoC-3526 - GCCAGGCCCCAGGAGACCC 19 3272 myoC-185 - UGCCAGGCCCCAGGAGACCC 20 571 myoC-3527 - CUGCCAGGCCCCAGGAGACCC 21 3273 myoC-3528 - GCUGCCAGGCCCCAGGAGACCC 22 3274 myoC-3529 - GGCUGCCAGGCCCCAGGAGACCC 23 3275 myoC-3530 - AGGCUGCCAGGCCCCAGGAGACCC 24 3276 myoC-3531 - ACCAGGCUGCCAGGCCCC 18 3277 myoC-3532 - GACCAGGCUGCCAGGCCCC 19 3278 myoC-97 - GGACCAG G CU G CCAG G CCCC 20 502 myoC-3533 - UGGACCAGGCUGCCAGGCCCC 21 3279 myoC-3534 - UUGGACCAGGCUGCCAGGCCCC 22 3280 myoC-3535 - CUUGGACCAGGCUGCCAGGCCCC 23 3281 myoC-3536 - CCUUGGACCAGGCUGCCAGGCCCC 24 3282 myoC-3537 - GACCAGGCUGCCAGGCCC 18 3283 myoC-3538 - GGACCAGGCUGCCAGGCCC 19 3284 myoC-1615 - UGGACCAGGCUGCCAGGCCC 20 1893 myoC-3539 - UUGGACCAGGCUGCCAGGCCC 21 3285 myoC-3540 - CUUGGACCAGGCUGCCAGGCCC 22 3286 myoC-3541 - CCUUGGACCAGGCUGCCAGGCCC 23 3287 myoC-3542 - ACCUUGGACCAGGCUGCCAGGCCC 24 3288 myoC-3543 - AAGCUCGACUCAGCUCCC 18 3289 myoC-3544 - AAAGCUCGACUCAGCUCCC 19 3290 myoC-181 - CAAAGCUCGACUCAGCUCCC 20 567 myoC-3545 - CCAAAGCUCGACUCAGCUCCC 21 3291 myoC-3546 - ACCAAAGCUCGACUCAGCUCCC 22 3292 myoC-3547 - CACCAAAGCUCGACUCAGCUCCC 23 3293 myoC-3548 - CCACCAAAGCUCGACUCAGCUCCC 24 3294 myoC-3549 - G G U U G G A A AG C AG C AG CC 18 3295 myoC-3550 - AG G U U G G A AAG CAG CAGCC 19 3296 myoC-107 - GAGGU UGGAAAGCAGCAGCC 20 511 myoC-3551 - GGAGGU UGGAAAGCAGCAGCC 21 3297 myoC-3552 - AGGAGGUUGGAAAGCAGCAGCC 22 3298 myoC-3553 - CAGGAGGUUGGAAAGCAGCAGCC 23 3299 myoC-3554 - CCAGGAGGUUGGAAAGCAGCAGCC 24 3300 myoC-3555 - GAAAAUGAGAAUCUGGCC 18 3301 myoC-3556 - AGAAAAUGAGAAUCUGGCC 19 3302 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 581 myoC-3557 - CAAGAAAAUGAGAAUCUGGCC 21 3303 myoC-3558 - GCAAGAAAAUGAGAAUCUGGCC 22 3304 myoC-3559 - GGCAAGAAAAUGAGAAUCUGGCC 23 3305 myoC-3560 - AGGCAAGAAAAUGAGAAUCUGGCC 24 3306 myoC-3561 - CCAAUGAAUCCAGCUGCC 18 3307 myoC-3562 - CCCAAUGAAUCCAGCUGCC 19 3308 myoC-1605 - UCCCAAUGAAUCCAGCUGCC 20 1885 myoC-3563 - GUCCCAAUGAAUCCAGCUGCC 21 3309 myoC-3564 - AGUCCCAAUGAAUCCAGCUGCC 22 3310 myoC-3565 - CAGUCCCAAUGAAUCCAGCUGCC 23 3311 myoC-3566 - CCAGUCCCAAUGAAUCCAGCUGCC 24 3312 myoC-3567 - AAAGCUCGACUCAGCUCC 18 3313 myoC-3568 - CAAAGCUCGACUCAGCUCC 19 3314 myoC-1611 - CCAAAGCUCGACUCAGCUCC 20 1890 myoC-3569 - ACCAAAGCUCGACUCAGCUCC 21 3315 myoC-3570 - CACCAAAGCUCGACUCAGCUCC 22 3316 myoC-3571 - CCACCAAAGCUCGACUCAGCUCC 23 3317 myoC-3572 - GCCACCAAAGCUCGACUCAGCUCC 24 3318 myoC-3573 - GGCGGGAGCGGGACCAGC 18 3319 myoC-3574 - AGGCGGGAGCGGGACCAGC 19 3320 myoC-105 - GAGGCGGGAGCGGGACCAGC 20 510 myoC-3575 - UG AGGCGGGAGCGGGACCAGC 21 3321 myoC-3576 - CUG AGGCGGGAGCGGGACCAGC 22 3322 myoC-3577 - CCUG AGGCGGGAGCGGGACCAGC 23 3323 myoC-3578 - CCCUGAGGCGGGAGCGGGACCAGC 24 3324 myoC-3579 - AG G U U G G AA AG CAG CAG C 18 3325 myoC-3580 - GAGGUUGG A A AG CAG CAG C 19 3326 myoC-1653 - GGAGGUUGGAAAGCAGCAGC 20 1917 myoC-3581 - AGGAGGU UGGAAAGCAGCAGC 21 3327 myoC-3582 - CAGGAGGUUGGAAAGCAGCAGC 22 3328 myoC-3583 - CCAGGAGGUUGGAAAGCAGCAGC 23 3329 myoC-3584 - GCCAGGAGGU UGGAAAGCAGCAGC 24 3330 myoC-3585 - AGAAGAAGCGACUAAGGC 18 3331 myoC-3586 - GAGAAGAAGCGACUAAGGC 19 3332 myoC-1646 - AG AGAAGAAGCGACUAAGGC 20 1912 myoC-3587 - AAG AGAAGAAGCGACUAAGGC 21 3333 myoC-3588 - GAAG AGAAGAAGCGACUAAGGC 22 3334 myoC-3589 - GG AAG AGAAGAAGCGACUAAGGC 23 3335 myoC-3590 - AGG AAG AGAAGAAGCGACUAAGGC 24 3336 myoC-3591 - AGCUGGGCACCCUGAGGC 18 3337 myoC-3592 - GAGCUGGGCACCCUGAGGC 19 3338 myoC-103 - GGAGCUGGGCACCCUGAGGC 20 508 myoC-3593 - GGG AGCUGGGCACCCUGAGGC 21 3339 myoC-3594 - AGGG AGCUGGGCACCCUGAGGC 22 3340 myoC-3595 - GAGGG AGCUGGGCACCCUGAGGC 23 3341 myoC-3596 - AGAGGGAGCUGGGCACCCUGAGGC 24 3342 myoC-3597 - GGUGUGGGAUGUGGGGGC 18 3343 myoC-3598 - UGGUGUGGGAUGUGGGGGC 19 3344 myoC-1600 - CUGGUGUGGGAUGUGGGGGC 20 1881 myoC-3599 - CCUGGUGUGGGAUGUGGGGGC 21 3345 myoC-3600 - GCCUGGUGUGGGAUGUGGGGGC 22 3346 myoC-3601 - UGCCUGGUGUGGGAUG UGGGGGC 23 3347 myoC-3602 - CUGCCUGGUGUGGGAUGUGGGGGC 24 3348 myoC-3603 - GUUGCUGCAGCUUUGGGC 18 3349 myoC-3604 - CGUUGCUGCAGCUU UGGGC 19 3350 myoC-1594 - ACGU UGCUGCAGCUUUGGGC 20 1878 myoC-3605 - CACGUUGCUGCAGCU UUGGGC 21 3351 myoC-3606 - GCACGUUGCUGCAGCU UUGGGC 22 3352 myoC-3607 - UGCACGUUGCUGCAGCUUUGGGC 23 3353 myoC-3608 - GUGCACGUUGCUGCAGCUUUGGGC 24 3354 myoC-3609 - AGAAAAUGAGAAUCUGGC 18 3355 myoC-3610 - AAGAAAAUGAGAAUCUGGC 19 3356 myoC-1649 - CAAGAAAAUGAGAAUCUGGC 20 1915 myoC-3611 - GCAAGAAAAUGAGAAUCUGGC 21 3357 myoC-3612 - GGCAAGAAAAUGAGAAUCUGGC 22 3358 myoC-3613 - AGGCAAGAAAAUGAGAAUCUGGC 23 3359 myoC-3614 - AAGGCAAGAAAAUGAGAAUCUGGC 24 3360 myoC-3615 - GCCAGGACAGCUCAGCUC 18 3361 myoC-3616 - GGCCAGGACAGCUCAGCUC 19 3362 myoC-96 - GGGCCAGGACAGCUCAGCUC 20 501 myoC-3617 - GGGGCCAGGACAGCUCAGCUC 21 3363 myoC-3618 - GGGGGCCAGGACAGCUCAGCUC 22 3364 myoC-3619 - UGGGGGCCAGGACAGCUCAGCUC 23 3365 myoC-3620 - GUGGGGGCCAGGACAGCUCAGCUC 24 3366 myoC-3621 - U CCG AG AC A AG U C AG U U C 18 3367 myoC-3622 - CUCCGAGACAAGUCAGU UC 19 3368 myoC-191 - CCUCCGAGACAAGUCAGUUC 20 577 myoC-3623 - UCCUCCGAGACAAGUCAGUUC 21 3369 myoC-3624 - CUCCUCCGAGACAAGUCAGUUC 22 3370 myoC-3625 - CCUCCUCCGAGACAAGUCAGU UC 23 3371 myoC-3626 - ACCUCCUCCG AG ACAAG UCAG U UC 24 3372 myoC-3627 - AGGCGGGAGCGGGACCAG 18 3373 myoC-3628 - GAGGCGGGAGCGGGACCAG 19 3374 myoC-1632 - UG AGGCGGGAGCGGGACCAG 20 1902 myoC-3629 - CUGAGGCGGGAGCGGGACCAG 21 3375 myoC-3630 - CCUG AGGCGGGAGCGGGACCAG 22 3376 myoC-3631 - CCCUG AGGCGGGAGCGGGACCAG 23 3377 myoC-3632 - ACCCUGAGGCGGGAGCGGGACCAG 24 3378 myoC-3633 - AGGCCCCAGGAGACCCAG 18 3379 myoC-3634 - CAGGCCCCAGGAGACCCAG 19 3380 myoC-1619 - CCAGGCCCCAGGAGACCCAG 20 1895 myoC-3635 - GCCAGGCCCCAGGAGACCCAG 21 3381 myoC-3636 - UGCCAGGCCCCAGGAGACCCAG 22 3382 myoC-3637 - CUGCCAGGCCCCAGGAGACCCAG 23 3383 myoC-3638 - GCUGCCAGGCCCCAGGAGACCCAG 24 3384 myoC-3639 - ACCCAGGAGGGGCUGCAG 18 3385 myoC-3640 - GACCCAGGAGGGGCUGCAG 19 3386 myoC-188 - AG ACCCAGGAGGGGCUGCAG 20 574 myoC-3641 - GAG ACCCAGGAGGGGCUGCAG 21 3387 myoC-3642 - GGAG ACCCAGGAGGGGCUGCAG 22 3388 myoC-3643 - AGG AG ACCCAGGAGGGGCUGCAG 23 3389 myoC-3644 - CAGGAGACCCAGGAGGGGCUGCAG 24 3390 myoC-3645 - UCAGUUCUGGAGGAAGAG 18 3391 myoC-3646 - GUCAGUUCUGGAGGAAGAG 19 3392 myoC-1645 - AG UCAGU UCUGGAGGAAGAG 20 1911 myoC-3647 - AAG UCAGUUCUGGAGGAAGAG 21 3393 myoC-3648 - CAAG UCAGU UCUGGAGGAAGAG 22 3394 myoC-3649 - AC AAG U C AG UUCUGGAGGAAGAG 23 3395 myoC-3650 - GACAAGUCAGUUCUGGAGGAAGAG 24 3396 myoC-3651 - GAAUCCAGCUGCCCAGAG 18 3397 myoC-3652 - UGAAUCCAGCUGCCCAGAG 19 3398 myoC-1606 - AUGAAUCCAGCUGCCCAGAG 20 1886 myoC-3653 - AAUGAAUCCAGCUGCCCAGAG 21 3399 myoC-3654 - CAAUGAAUCCAGCUG CCC AG AG 22 3400 myoC-3655 - CCAAUGAAUCCAGCUGCCCAGAG 23 3401 myoC-3656 - CCCAAUGAAUCCAGCUGCCCAGAG 24 3402 myoC-3657 - G A A ACCC A A ACC AG AG AG 18 3403 myoC-3658 - GGAAACCCAAACCAGAGAG 19 3404 myoC-1636 - UGGAAACCCAAACCAGAGAG 20 1905 myoC-3659 - CUGGAAACCCAAACCAGAGAG 21 3405 myoC-3660 - G C U G G A A ACCC A A ACC AG AG AG 22 3406 myoC-3661 - AGCUGGAAACCCAAACCAGAGAG 23 3407 myoC-3662 - CAGCUGGAAACCCAAACCAGAGAG 24 3408 myoC-3663 - GAGGGGCUGCAGAGGGAG 18 3409 myoC-3664 - GGAGGGGCUGCAGAGGGAG 19 3410 myoC-1625 - AGGAGGGGCUGCAGAGGGAG 20 1898 myoC-3665 - CAGGAGGGGCUGCAGAGGGAG 21 3411 myoC-3666 - CCAGGAGGGGCUGCAGAGGGAG 22 3412 myoC-3667 - CCCAGGAGGGGCUGCAGAGGGAG 23 3413 myoC-3668 - ACCCAGGAGGGGCUGCAGAGGGAG 24 3414 myoC-3669 - GGCACCCUGAGGCGGGAG 18 3415 myoC-3670 - GGGCACCCUGAGGCGGGAG 19 3416 myoC-190 - UGGGCACCCUGAGGCGGGAG 20 576 myoC-3671 - CUGGGCACCCUGAGGCGGGAG 21 3417 myoC-3672 - GCUGGGCACCCUGAGGCGGGAG 22 3418 myoC-3673 - AGCUGGGCACCCUGAGGCGGGAG 23 3419 myoC-3674 - GAGCUGGGCACCCUGAGGCGGGAG 24 3420 myoC-3675 - GGAGCUGGGCACCCUGAG 18 3421 myoC-3676 - GGGAGCUGGGCACCCUGAG 19 3422 myoC-1627 - AGGGAGCUGGGCACCCUGAG 20 1900 myoC-3677 - GAGGGAGCUGGGCACCCUGAG 21 3423 myoC-3678 - AGAGGGAGCUGGGCACCCUGAG 22 3424 myoC-3679 - CAGAGGGAGCUGGGCACCCUGAG 23 3425 myoC-3680 - GCAG AGGGAGCUGGGCACCCUGAG 24 3426 myoC-3681 - GGCCCCAGGAGACCCAGG 18 3427 myoC-3682 - AGGCCCCAGGAGACCCAGG 19 3428 myoC-186 - CAGGCCCCAGGAGACCCAGG 20 572 myoC-3683 - CCAGGCCCCAGGAGACCCAGG 21 3429 myoC-3684 - GCCAGGCCCCAGGAGACCCAGG 22 3430 myoC-3685 - UGCCAGGCCCCAGGAGACCCAGG 23 3431 myoC-3686 - CUGCCAGGCCCCAGGAGACCCAGG 24 3432 myoC-3687 - GAGAAUCUGGCCAGGAGG 18 3433 myoC-3688 - UGAGAAUCUGGCCAGGAGG 19 3434 myoC-1651 - AUGAGAAUCUGGCCAGGAGG 20 1916 myoC-3689 - AAUGAGAAUCUGGCCAGGAGG 21 3435 myoC-3690 - AAAUGAGAAUCUGGCCAGGAGG 22 3436 myoC-3691 - AAAAUGAGAAUCUGGCCAGGAGG 23 3437 myoC-3692 - GAAAAUGAGAAUCUGGCCAGGAGG 24 3438 myoC-3693 - ACAAGUCAGUUCUGGAGG 18 3439 myoC-3694 - GACAAGUCAGUUCUGGAGG 19 3440 myoC-1643 - AGACAAGUCAGU UCUGGAGG 20 1909 myoC-3695 - GAGACAAGUCAGU UCUGGAGG 21 3441 myoC-3696 - CGAGACAAGUCAGUUCUGGAGG 22 3442 myoC-3697 - CCGAGACAAGUCAGUUCUGGAGG 23 3443 myoC-3698 - UCCGAGACAAGUCAGU UCUGGAGG 24 3444 myoC-3699 - GAGCUGGGCACCCUGAGG 18 3445 myoC-3700 - GGAGCUGGGCACCCUGAGG 19 3446 myoC-102 - GGGAGCUGGGCACCCUGAGG 20 507 myoC-3701 - AGGGAGCUGGGCACCCUGAGG 21 3447 myoC-3702 - GAGGGAGCUGGGCACCCUGAGG 22 3448 myoC-3703 - AGAGGGAGCUGGGCACCCUGAGG 23 3449 myoC-3704 - CAGAGGGAGCUGGGCACCCUGAGG 24 3450 myoC-3705 - GAGACAAGUCAGUUCUGG 18 3451 myoC-3706 - CGAGACAAGUCAGUUCUGG 19 3452 myoC-192 - CCGAGACAAGUCAGUUCUGG 20 578 myoC-3707 - UCCGAGACAAGUCAGU UCUGG 21 3453 myoC-3708 - CUCCGAGACAAGUCAGU UCUGG 22 3454 myoC-3709 - CCU CCG AG ACAAG UCAG U UCU GG 23 3455 myoC-3710 - UCCUCCGAGACAAGUCAGUUCUGG 24 3456 myoC-3711 - CCUGCCUGGUGUGGGAUG 18 3457 myoC-3712 - GCCUGCCUGGUGUGGGAUG 19 3458 myoC-94 - GGCCUGCCUGGUGUGGGAUG 20 499 myoC-3713 - UGGCCUGCCUGGUGUGGGAUG 21 3459 myoC-3714 - CUGGCCUGCCUGGUGUGGGAUG 22 3460 myoC-3715 - UCUGGCCUGCCUGGUG UGGGAUG 23 3461 myoC-3716 - UUCUGGCCUGCCUGGUGUGGGAUG 24 3462 myoC-3717 - GCUCGACUCAGCUCCCUG 18 3463 myoC-3718 - AGCUCGACUCAGCUCCCUG 19 3464 myoC-1613 - AAGCUCGACUCAGCUCCCUG 20 1891 myoC-3719 - AAAGCUCGACUCAGCUCCCUG 21 3465 myoC-3720 - CAAAGCUCGACUCAGCUCCCUG 22 3466 myoC-3721 - CCAAAGCUCGACUCAGCUCCCUG 23 3467 myoC-3722 - ACCAAAGCUCGACUCAGCUCCCUG 24 3468 myoC-3723 - GAGACCCAGGAGGGGCUG 18 3469 myoC-3724 - GGAGACCCAGGAGGGGCUG 19 3470 myoC-1621 - AGGAGACCCAGGAGGGGCUG 20 1896 myoC-3725 - CAGGAGACCCAGGAGGGGCUG 21 3471 myoC-3726 - CCAGGAGACCCAGGAGGGGCUG 22 3472 myoC-3727 - CCCAGGAGACCCAGGAGGGGCUG 23 3473 myoC-3728 - CCCCAGGAGACCCAGGAGGGGCUG 24 3474 myoC-3729 - CG AG ACAAG UCAG UUCUG 18 3475 myoC-3730 - CCG AG ACAAG UCAG UUCUG 19 3476 myoC-1641 - UCCG AG ACAAG UCAG U UCUG 20 1908 myoC-3731 - CUCCGAGACAAGUCAGU UCUG 21 3477 myoC-3732 - CCUCCGAGACAAGUCAGUUCUG 22 3478 myoC-3733 - UCCUCCGAGACAAGUCAGUUCUG 23 3479 myoC-3734 - CUCCUCCGAGACAAGUCAGUUCUG 24 3480 myoC-3735 - GCCUGCCUGGUGUGGGAU 18 3481 myoC-3736 - GGCCUGCCUGGUGUGGGAU 19 3482 myoC-1597 - UGGCCUGCCUGGUGUGGGAU 20 1880 myoC-3737 - CUGGCCUGCCUGGUGUGGGAU 21 3483 myoC-3738 - UCUGGCCUGCCUGGUG UGGGAU 22 3484 myoC-3739 - UUCUGGCCUGCCUGGUGUGGGAU 23 3485 myoC-3740 - CU UCUGGCCUGCCUGGUGUGGGAU 24 3486 myoC-3741 - UGCCUACAGCAACCUCCU 18 3487 myoC-3742 - CUGCCUACAGCAACCUCCU 19 3488 myoC-1638 - ACUGCCUACAGCAACCUCCU 20 1906 myoC-3743 - GACUGCCUACAGCAACCUCCU 21 3489 myoC-3744 - AGACUGCCUACAGCAACCUCCU 22 3490 myoC-3745 - GAGACUGCCUACAGCAACCUCCU 23 3491 myoC-3746 - GGAGACUGCCUACAGCAACCUCCU 24 3492 myoC-3747 - GUGCACGUUGCUGCAGCU 18 3493 myoC-3748 - UGUGCACGU UGCUGCAGCU 19 3494 myoC-1593 - CUGUGCACGUUGCUGCAGCU 20 1877 myoC-3749 - UCUGUGCACGUUGCUGCAGCU 21 3495 myoC-3750 - UUCUGUGCACGUUGCUGCAGCU 22 3496 myoC-3751 - CUUCUGUGCACGUUGCUGCAGCU 23 3497 myoC-3752 - UCU UCUGUGCACGUUGCUGCAGCU 24 3498 myoC-3753 - GGCCAGGACAGCUCAGCU 18 3499 myoC-3754 - GGGCCAGGACAGCUCAGCU 19 3500 myoC-1601 - GGGGCCAGGACAGCUCAGCU 20 1882 myoC-3755 - GGGGGCCAGGACAGCUCAGCU 21 3501 myoC-3756 - UGGGGGCCAGGACAGCUCAGCU 22 3502 myoC-3757 - GUGGGGGCCAGGACAGCUCAGCU 23 3503 myoC-3758 - UG UGGGGGCCAGGACAGCUCAGCU 24 3504 myoC-3759 - AAACCCAAACCAG AG AG U 18 3505 myoC-3760 - G AAACCCAAACCAG AG AG U 19 3506 myoC-106 - GG AAACCCAAACCAG AG AG U 20 479 myoC-3761 - UGG AAACCCAAACCAG AGAGU 21 3507 myoC-3762 - CUGG AAACCCAAACCAG AG AGU 22 3508 myoC-3763 - GCUGG AAACCCAAACCAG AGAGU 23 3509 myoC-3764 - AGCUGG AAACCCAAACCAG AG AGU 24 3510 myoC-3765 - AGAAUCUGGCCAGGAGGU 18 3511 myoC-3766 - GAGAAUCUGGCCAGGAGGU 19 3512 myoC-197 - UG AGAAUCUGGCCAGGAGGU 20 583 myoC-3767 - AUG AGAAUCUGGCCAGGAGGU 21 3513 myoC-3768 - AAUG AGAAUCUGGCCAGGAGGU 22 3514 myoC-3769 - AAAUG AGAAUCUGGCCAGGAGGU 23 3515 myoC-3770 - AAAAUGAGAAUCUGGCCAGGAGGU 24 3516 myoC-3771 - GCUUCUGGCCUGCCUGGU 18 3517 myoC-3772 - UGCUUCUGGCCUGCCUGGU 19 3518 myoC-1595 - CUGCU UCUGGCCUGCCUGGU 20 1879 myoC-3773 - GCUGCUUCUGGCCUGCCUGGU 21 3519 myoC-3774 - UGCUGCUUCUGGCCUGCCUGGU 22 3520 myoC-3775 - CUGCUGCUUCUGGCCUGCCUGGU 23 3521 myoC-3776 - GCUGCUGCU UCUGGCCUGCCUGGU 24 3522 myoC-3777 - CUGCCUGGUGUGGGAUGU 18 3523 myoC-3778 - CCUGCCUGGUGUGGGAUGU 19 3524 myoC-95 - GCCUGCCUGGUGUGGGAUGU 20 500 myoC-3779 - GGCCUGCCUGGUGUGGGAUGU 21 3525 myoC-3780 - UGGCCUGCCUGGUGUGGGAUGU 22 3526 myoC-3781 - CUGGCCUGCCUGGUGUGGGAUGU 23 3527 myoC-3782 - UCUGGCCUGCCUGGUGUGGGAUGU 24 3528 myoC-3783 - CUCCGAGACAAGUCAGU U 18 3529 myoC-3784 - CCUCCGAGACAAGUCAGUU 19 3530 myoC-1639 - U CCU CCG AG ACAAG UCAG U U 20 1907 myoC-3785 - CUCCU CCG AG ACAAG U CAG U U 21 3531 myoC-3786 - CCUCCUCCGAGACAAGUCAGU U 22 3532 myoC-3787 - ACCUCCU CCG AG ACAAG UCAG U U 23 3533 myoC-3788 - AACCUCCUCCGAGACAAGUCAGUU 24 3534
Table 7E provides exemplary targeting domains for knocking out the MYOC gene selected according to the fifth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene), start with a 5 ' G and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 7E
5th Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-3789 + GUACUUAUAGCGGU UCUUGAA 21 3535 myoC-3790 + GCUGUACUUAUAGCGG UUCUUGAA 24 3536 myoC-3791 + GCAAAGAGCUUCUUCUCCA 19 3537 myoC-62 + GGCAAAGAGCUUCUUCUCCA 20 448 myoC-3792 + GAAAAU UUUAUU UCACAAUGUA 22 3538 myoC-3793 + GUCAAUGUCCG UGUAGCCACCCC 23 3539 myoC-3794 + GUCCGUGGUAGCCAGCUCC 19 3540 myoC-3795 + GAACUGUCCGUGGUAGCCAGCUCC 24 3541 myoC-3796 + GCCCUGGAAAUAGAGGCUCC 20 3542 myoC-3797 + GCGCCCUGGAAAUAGAGGCUCC 22 3543 myoC-3798 + GAUUCUCCACGUGGUCUC 18 3544 myoC-3799 + GUCGAUUCUCCACGUGG UCUC 21 3545 myoC-3800 + GUGUCGAUUCUCCACGUGGUCUC 23 3546 myoC-3801 + GCACAGCCCGAGCAGUGUC 19 3547 myoC-1700 + GGCACAGCCCGAGCAGUGUC 20 1952 myoC-3802 + GUGGCACAGCCCGAGCAGUGUC 22 3548 myoC-3803 + GGUGGCACAGCCCGAGCAGUGUC 23 3549 myoC-3804 + GCCCUCAGACUACAAUUC 18 3550 myoC-3805 + GUCUACGCCCUCAGACUACAAUUC 24 3551 myoC-3806 + GCUGUACUUAUAGCGG UUC 19 3552 myoC-3807 + GCUGCUGUACUUAUAGCGGUUC 22 3553 myoC-3808 + GCAGUAUGUGAACCU UAG 18 3554 myoC-3809 + GGCAG UAUGUGAACCU UAG 19 3555 myoC-3810 + GCCUAGGCAGUAUGUGAACCUUAG 24 3556 myoC-3811 + GUGUAGGGGUAGGUGGGCU 19 3557 myoC-478 + GGUGUAGGGGUAGGUGGGCU 20 820 myoC-3812 + GGGUGUAGGGGUAGGUGGGCU 21 3558 myoC-3813 + GU UCGAGU UCCAGAUUCU 18 3559 myoC-3814 + GUU UGUUCGAGUUCCAGAUUCU 22 3560 myoC-3815 + GGU UUGU UCGAGUUCCAGAUUCU 23 3561 myoC-3816 + GU UCUUGAAUGGGAUGGU 18 3562 myoC-3817 + GGUUCUUGAAUGGGAUGGU 19 3563 myoC-3818 + GCGGUUCU UGAAUGGGAUGGU 21 3564 myoC-3819 + GU UUGUCUCCCAGGU UUGU 19 3565 myoC-3820 + GAUGU UUGUCUCCCAGGUUUGU 22 3566 myoC-3821 + GGAUGUUUGUCUCCCAGGUUUGU 23 3567 myoC-3822 + GUGACCAUGUUCAUCCU U 18 3568 myoC-3823 + GGUGACCAUGUUCAUCCUU 19 3569 myoC-3824 + GAUGGUGACCAUGU UCAUCCUU 22 3570 myoC-3000 + GCAU UGGCGACUGACUGCUU 20 2793 myoC-3825 + GGCAUUGGCGACUGACUGCUU 21 3571 myoC-3826 + GAAGGCAUUGGCGACUGACUGCUU 24 3572 myoC-3827 - GUCCUCUCCAAACUGAACCCA 21 3573 myoC-3828 - GAAUAGCUCCUCUGGCCAGCA 21 3574 myoC-3829 - GCAGAAUAGCUCCUCUGGCCAGCA 24 3575 myoC-3830 - GGCUUCUAAUGCUUCAGA 18 3576 myoC-3831 - GUUGGCUUCUAAUGCU UCAGA 21 3577 myoC-3832 - GUUU UCUUU UCUGAAU UUAC 20 3578 myoC-3833 - GCCUAGGCCACUGGAAAGC 19 3579 myoC-3834 - GAGAAUCGACACAGUUGGC 19 3580 myoC-3835 - GGAGAAUCGACACAGUUGGC 20 3581 myoC-3836 - GUGGAGAAUCGACACAGUUGGC 22 3582 myoC-3837 - GAGCCCAUCUGGCUAUCUC 19 3583 myoC-3838 - GAGAGCCCAUCUGGCUAUCUC 21 3584 myoC-3839 - GGAGAGCCCAUCUGGCUAUCUC 22 3585 myoC-3840 - GUCACCAUCUAACUAU UC 18 3586 myoC-3841 - GGUCACCAUCUAACUAU UC 19 3587 myoC-3842 - GCUAACUGAAGUUCCUGCUUC 21 3588 myoC-3843 - GAGCUAACUGAAGUUCCUGCUUC 23 3589 myoC-3844 - GCAUAACUUCUAAAGGAAG 19 3590 myoC-3845 - GCUUCAGAUAGAAUACAG 18 3591 myoC-2905 - GAACUGUCAUAAGAUAUGAG 20 1807 myoC-3846 - GCCUCUAUU UCCAGGGCG 18 3592 myoC-3847 - GAGCCUCUAU UUCCAGGGCG 20 3593 myoC-3848 - GGAGCCUCUAU UUCCAGGGCG 21 3594 myoC-3849 - GGGAGCCUCUAUUUCCAGGGCG 22 3595 myoC-3850 - GGGGAGCCUCUAUUUCCAGGGCG 23 3596 myoC-3851 - GCUCCAGAGAAGGUAAGAAUG 21 3597 myoC-3852 - GGCUCCAGAGAAGGUAAGAAUG 22 3598 myoC-3853 - GAAUGCAGAGUGGGGGGACU 20 3599 myoC-3854 - GUAAGAAUGCAGAGUGGGGGGACU 24 3600 myoC-2920 - GCUGUGGAUGAAGCAGGCCU 20 1819 myoC-3855 - GGCUGUGGAUGAAGCAGGCCU 21 3601 myoC-3856 - GCUACACGGACAU UGACUUGGCU 23 3602 myoC-3857 - GGCUACACGGACAUUGACUUGGCU 24 3603 myoC-3858 - GGACAGUUCCCGUAUUCU 18 3604 myoC-3859 - GCCACCAGGCUCCAGAGAAGGU 22 3605 myoC-3860 - GUGCCACCAGGCUCCAGAGAAGGU 24 3606 myoC-3861 - GUUCUCU UCCUUGAACUUUGU 21 3607 myoC-3862 - GCACGGAUGUCCGCCAGGUUU 21 3608 myoC-3863 - GGCACGGAUGUCCGCCAGGUUU 22 3609
Table 7F provides exemplary targeting domains for knocking out the MYOC gene selected according to the six tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene) and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 7F
6th Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-3864 + CU UAUAGCGGU UCUUGAA 18 3610 myoC-3865 + ACU UAUAGCGGUUCUUGAA 19 3611 myoC-66 + UACUUAUAGCGGU UCUUGAA 20 461 myoC-3866 + UGUACUUAUAGCGGUUCUUGAA 22 3612 myoC-3867 + CUGUACUUAUAGCGGU UCUUGAA 23 3613 myoC-3868 + CAAAGAGCU UCUUCUCCA 18 3614 myoC-3869 + AGGCAAAGAGCUUCUUCUCCA 21 3615 myoC-3870 + CAGGCAAAGAGCUUCU UCUCCA 22 3616 myoC-3871 + CCAGGCAAAGAGCUUCU UCUCCA 23 3617 myoC-3872 + CCCAGGCAAAGAGCU UCUUCUCCA 24 3618 myoC-3873 + AAAUGCUGACAGAAGAUA 18 3619 myoC-3874 + UAAAUGCUGACAGAAGAUA 19 3620 myoC-3875 + AU AAAUGCUGACAGAAGAUA 20 3621 myoC-3876 + CAU AAAUGCUGACAGAAGAUA 21 3622 myoC-3877 + CCAU AAAUGCUGACAGAAGAUA 22 3623 myoC-3878 + CCCAU AAAUGCUGACAGAAGAUA 23 3624 myoC-3879 + UCCCAU AAAUGCUGACAGAAGAUA 24 3625 myoC-3880 + AUUU UAUUUCACAAUGUA 18 3626 myoC-3881 + AAUUUUAU UUCACAAUGUA 19 3627 myoC-3882 + AAAUUU UAUU UCACAAUGUA 20 3628 myoC-3883 + AAAAUUUUAUUUCACAAUGUA 21 3629 myoC-3884 + AGAAAAUUUUAU UUCACAAUGUA 23 3630 myoC-3885 + AAG AAAAU U U U AU U U CACAAUG U A 24 3631 myoC-3886 + UGUCCGUGUAGCCACCCC 18 3632 myoC-3887 + AUGUCCGUGUAGCCACCCC 19 3633 myoC-2928 + AAUGUCCGUGUAGCCACCCC 20 1824 myoC-3888 + CA AU G U CCG U G U AG CCACCCC 21 3634 myoC-3889 + UCAAUGUCCGUGUAGCCACCCC 22 3635 myoC-3890 + AGUCAAUGUCCGUGUAGCCACCCC 24 3636 myoC-3891 + UCCGUGGUAGCCAGCUCC 18 3637 myoC-23 + UGUCCGUGGUAGCCAGCUCC 20 420 myoC-3892 + CUGUCCGUGGUAGCCAGCUCC 21 3638 myoC-3893 + ACUGUCCGUGGUAGCCAGCUCC 22 3639 myoC-3894 + AACUG U CCG U GG U AGCCAGCU CC 23 3640 myoC-3895 + CCUGGAAAUAGAGGCUCC 18 3641 myoC-3896 + CCCUGGAAAUAGAGGCUCC 19 3642 myoC-3897 + CGCCCUGGAAAUAGAGGCUCC 21 3643 myoC-3898 + AGCGCCCUGGAAAUAGAGGCUCC 23 3644 myoC-3899 + CAGCGCCCUGGAAAUAGAGGCUCC 24 3645 myoC-3900 + CGAU UCUCCACGUGGUCUC 19 3646 myoC-3901 + UCGAU UCUCCACGUGGUCUC 20 3647 myoC-3902 + UGUCGAUUCUCCACGUGGUCUC 22 3648 myoC-3903 + UGUGUCGAUUCUCCACGUGGUCUC 24 3649 myoC-3904 + CACAG CCCG AG C AG U G U C 18 3650 myoC-3905 + UGGCACAGCCCGAGCAGUGUC 21 3651 myoC-3906 + UGGUGGCACAGCCCGAGCAGUGUC 24 3652 myoC-3907 + CGCCCUCAG ACU ACAAU UC 19 3653 myoC-3039 + ACGCCCUCAG ACU ACAAU UC 20 2816 myoC-3908 + UACGCCCUCAGACUACAAUUC 21 3654 myoC-3909 + CUACGCCCUCAGACUACAAUUC 22 3655 myoC-3910 + UCUACGCCCUCAGACUACAAUUC 23 3656 myoC-3911 + CUGUACUUAUAGCGGU UC 18 3657 myoC-2969 + UGCUGUACU UAUAGCGGUUC 20 1856 myoC-3912 + CUGCUGUACU UAUAGCGGUUC 21 3658 myoC-3913 + UGCUGCUGUACUUAUAGCGGUUC 23 3659 myoC-3914 + AUGCUGCUGUACUUAUAGCGGUUC 24 3660 myoC-3915 + AGGCAGUAUGUGAACCUUAG 20 3661 myoC-3916 + UAGGCAGUAUGUGAACCUUAG 21 3662 myoC-3917 + CU AGGCAGUAUGUGAACCUUAG 22 3663 myoC-3918 + CCU AGGCAGUAUGUGAACCUUAG 23 3664 myoC-3919 + AGUUCAAGGAAGAGAACG 18 3665 myoC-3920 + AAGU UCAAGGAAGAGAACG 19 3666 myoC-3921 + AAAGUUCAAGGAAGAGAACG 20 3667 myoC-3922 + CAAAG U U CAAGG AAG AG AACG 21 3668 myoC-3923 + ACAAAGU UCAAGGAAGAGAACG 22 3669 myoC-3924 + CACAAAGUUCAAGGAAGAGAACG 23 3670 myoC-3925 + CCACAAAGU UCAAGGAAGAGAACG 24 3671 myoC-3926 + UGUAGGGGUAGGUGGGCU 18 3672 myoC-3927 + UGGGUGUAGGGGUAGGUGGGCU 22 3673 myoC-3928 + CUGGGUGUAGGGGUAGGUGGGCU 23 3674 myoC-3929 + CCUGGGUGUAGGGGUAGGUGGGCU 24 3675 myoC-3930 + UGUUCGAGUUCCAGAU UCU 19 3676 myoC-3931 + UUGUUCGAGUUCCAGAU UCU 20 3677 myoC-3932 + UU UGUUCGAGU UCCAGAUUCU 21 3678 myoC-3933 + AGGUU UGUUCGAGUUCCAGAU UCU 24 3679 myoC-2966 + CGGUUCUUGAAUGGGAUGGU 20 1854 myoC-3934 + AGCGG UUCUUGAAUGGGAUGGU 22 3680 myoC-3935 + UAGCGGUUCUUGAAUGGGAUGGU 23 3681 myoC-3936 + AUAGCGGUUCUUGAAUGGGAUGGU 24 3682 myoC-3937 + ACGUGGUCUCCUGGGUGU 18 3683 myoC-3938 + CACGUGGUCUCCUGGGUGU 19 3684 myoC-472 + CCACGUGGUCUCCUGGGUGU 20 814 myoC-3939 + UCCACGUGGUCUCCUGGGUGU 21 3685 myoC-3940 + CUCCACGUGGUCUCCUGGGUGU 22 3686 myoC-3941 + UCUCCACGUGGUCUCCUGGGUGU 23 3687 myoC-3942 + UUCUCCACGUGGUCUCCUGGGUGU 24 3688 myoC-3943 + UUUGUCUCCCAGGUU UGU 18 3689 myoC-2999 + UGUU UGUCUCCCAGGU UUGU 20 2792 myoC-3944 + AUGU UUGUCUCCCAGG UUUGU 21 3690 myoC-3945 + CGGAUGUUUGUCUCCCAGGUUUGU 24 3691 myoC-3038 + UGGUGACCAUGU UCAUCCUU 20 2815 myoC-3946 + AUGGUGACCAUGUUCAUCCU U 21 3692 myoC-3947 + AGAUGGUGACCAUGUUCAUCCUU 23 3693 myoC-3948 + UAGAUGGUGACCAUGUUCAUCCUU 24 3694 myoC-3949 + AUUGGCGACUGACUGCU U 18 3695 myoC-3950 + CAU UGGCGACUGACUGCUU 19 3696 myoC-3951 + AGGCAU UGGCGACUGACUGCUU 22 3697 myoC-3952 + AAGGCAUUGGCGACUGACUGCUU 23 3698 myoC-3953 - CUCUCCAAACUGAACCCA 18 3699 myoC-3954 - CCUCUCCAAACUGAACCCA 19 3700 myoC-3955 - UCCUCUCCAAACUGAACCCA 20 3701 myoC-3956 - UGUCCUCUCCAAACUGAACCCA 22 3702 myoC-3957 - U UGUCCUCUCCAAACUGAACCCA 23 3703 myoC-3958 - AU UGUCCUCUCCAAACUGAACCCA 24 3704 myoC-3959 - UAGCUCCUCUGGCCAGCA 18 3705 myoC-3960 - AUAGCUCCUCUGGCCAGCA 19 3706 myoC-3961 - AAUAGCUCCUCUGGCCAGCA 20 3707 myoC-3962 - AGAAUAGCUCCUCUGGCCAGCA 22 3708 myoC-3963 - CAGAAUAGCUCCUCUGGCCAGCA 23 3709 myoC-3964 - UGGCUUCUAAUGCU UCAGA 19 3710 myoC-3965 - UUGGCUUCUAAUGCU UCAGA 20 3711 myoC-3966 - AGUUGGCUUCUAAUGCUUCAGA 22 3712 myoC-3967 - CAGU UGGCUUCUAAUGCUUCAGA 23 3713 myoC-3968 - ACAGUUGGCUUCUAAUGCUUCAGA 24 3714 myoC-3969 - AUCUUCUGUCAGCAUUUA 18 3715 myoC-3970 - UAUCUUCUGUCAGCAUUUA 19 3716 myoC-488 - UUAUCUUCUGUCAGCAUUUA 20 830 myoC-3971 - UUUAUCUUCUGUCAGCAUU UA 21 3717 myoC-3972 - CU UUAUCU UCUGUCAGCAU UUA 22 3718 myoC-3973 - CCUUUAUCUUCUGUCAGCAUUUA 23 3719 myoC-3974 - UCCU UUAUCUUCUGUCAGCAUU UA 24 3720 myoC-3975 - UUUCU UUUCUGAAUUUAC 18 3721 myoC-3976 - UUUUCUUUUCUGAAUU UAC 19 3722 myoC-3977 - CGU UUUCUU UUCUGAAUUUAC 21 3723 myoC-3978 - UCGU UUUCUUUUCUGAAUU UAC 22 3724 myoC-3979 - UUCGU UUUCU UUUCUGAAUUUAC 23 3725 myoC-3980 - CU UCGUUU UCUUU UCUGAAUUUAC 24 3726 myoC-3981 - CCUAGGCCACUGGAAAGC 18 3727 myoC-3982 - UGCCUAGGCCACUGGAAAGC 20 3728 myoC-3983 - CUGCCUAGGCCACUGGAAAGC 21 3729 myoC-3984 - ACUGCCUAGGCCACUGGAAAGC 22 3730 myoC-3985 - UACUGCCUAGGCCACUGGAAAGC 23 3731 myoC-3986 - AU ACUGCCUAGGCCACUGGAAAGC 24 3732 myoC-3987 - AGAAUCGACACAGUUGGC 18 3733 myoC-3988 - UGGAGAAUCGACACAGUUGGC 21 3734 myoC-3989 - CGUGG AGAAUCGACACAGU UGGC 23 3735 myoC-3990 - ACGUGGAGAAUCGACACAGUUGGC 24 3736 myoC-3991 - AGCCCAUCUGGCUAUCUC 18 3737 myoC-319 - AGAGCCCAUCUGGCUAUCUC 20 705 myoC-3992 - AGGAGAGCCCAUCUGGCUAUCUC 23 3738 myoC-3993 - AAGGAGAGCCCAUCUGGCUAUCUC 24 3739 myoC-485 - UGGUCACCAUCUAACUAUUC 20 827 myoC-3994 - AUGGUCACCAUCUAACUAUUC 21 3740 myoC-3995 - CAUGGUCACCAUCUAACUAU UC 22 3741 myoC-3996 - ACAUGGUCACCAUCUAACUAUUC 23 3742 myoC-3997 - AACAUGGUCACCAUCUAACUAUUC 24 3743 myoC-3998 - AACUGAAGU UCCUGCUUC 18 3744 myoC-3999 - UAACUGAAGU UCCUGCU UC 19 3745 myoC-4000 - CUAACUGAAGUUCCUGCUUC 20 3746 myoC-4001 - AGCUAACUGAAGUUCCUGCUUC 22 3747 myoC-4002 - CGAGCUAACUGAAGUUCCUGCUUC 24 3748 myoC-4003 - CAUAACUUCUAAAGGAAG 18 3749 myoC-4004 - AGCAUAACUUCUAAAGGAAG 20 3750 myoC-4005 - AAGCAUAACUUCU A A AG G A AG 21 3751 myoC-4006 - AAAGCAUAACUUCUAAAGGAAG 22 3752 myoC-4007 - AAAAGCAUAACUUCUAAAGGAAG 23 3753 myoC-4008 - A A A A AG CAUAACU UCU A A AG G A AG 24 3754 myoC-4009 - UGCU UCAG AU AG AAU ACAG 19 3755 myoC-4010 - AUGCUUCAGAUAGAAUACAG 20 3756 myoC-4011 - AAUGCU UCAG AU AG AAU ACAG 21 3757 myoC-4012 - UAAUGCU UCAG AU AG AAU ACAG 22 3758 myoC-4013 - CU AAUGCU UCAG AU AG AAU ACAG 23 3759 myoC-4014 - UCU AAUGCU UCAGAU AG AAU ACAG 24 3760 myoC-4015 - AAGUUUUCAUUAAUCCAG 18 3761 myoC-4016 - CAAGUU UUCAUUAAUCCAG 19 3762 myoC-3020 - CCAAG UUUUCAUUAAUCCAG 20 2804 myoC-4017 - UCCAAGUUUUCAUUAAUCCAG 21 3763 myoC-4018 - U U CCA AG U U U U CAU U AAU CC AG 22 3764 myoC-4019 - UUUCCAAGUUU UCAUUAAUCCAG 23 3765 myoC-4020 - CU UUCCAAGUUUUCAUUAAUCCAG 24 3766 myoC-4021 - ACUGUCAUAAGAUAUGAG 18 3767 myoC-4022 - AACUGUCAUAAGAUAUGAG 19 3768 myoC-4023 - AGAACUGUCAUAAGAUAUGAG 21 3769 myoC-4024 - CAGAACUGUCAUAAGAUAUGAG 22 3770 myoC-4025 - CCAG AACUGUCAUAAGAUAUGAG 23 3771 myoC-4026 - UCCAG AACUGUCAUAAGAUAUGAG 24 3772 myoC-4027 - UUUAAUGCAGUUUCUACG 18 3773 myoC-4028 - UUUUAAUGCAGUUUCUACG 19 3774 myoC-313 - CU UUUAAUGCAGUUUCUACG 20 699 myoC-4029 - UCUU UUAAUGCAG UUUCUACG 21 3775 myoC-4030 - UUCUU UUAAUGCAGUUUCUACG 22 3776 myoC-4031 - UUUCU UUUAAUGCAGUUUCUACG 23 3777 myoC-4032 - CUU UCUU UUAAUGCAGUUUCUACG 24 3778 myoC-4033 - AGCCUCUAU UUCCAGGGCG 19 3779 myoC-4034 - CGGGGAGCCUCUAUUUCCAGGGCG 24 3780 myoC-4035 - CCAGAGAAGGUAAGAAUG 18 3781 myoC-4036 - UCCAG AG AAGGUAAGAAUG 19 3782 myoC-4037 - CUCCAGAGAAGGUAAGAAUG 20 3783 myoC-4038 - AGGCUCCAGAGAAGGUAAGAAUG 23 3784 myoC-4039 - CAGGCUCCAGAGAAGGUAAGAAUG 24 3785 myoC-4040 - CACCCAGG AG ACCACG UG 18 3786 myoC-4041 - ACACCCAGGAGACCACGUG 19 3787 myoC-4042 - U ACACCCAGG AG ACCACG UG 20 3788 myoC-4043 - CU ACACCCAGGAGACCACGUG 21 3789 myoC-4044 - CCUACACCCAGGAGACCACGUG 22 3790 myoC-4045 - CCCUACACCCAGGAGACCACGUG 23 3791 myoC-4046 - CCCCU AC ACCCAG G AG ACCACG U G 24 3792 myoC-4047 - AUGCAGAGUGGGGGGACU 18 3793 myoC-4048 - AAUGCAGAGUGGGGGGACU 19 3794 myoC-4049 - AGAAUGCAGAGUGGGGGGACU 21 3795 myoC-4050 - AAG AAUGCAGAGUGGGGGGACU 22 3796 myoC-4051 - UAAG AAUGCAGAGUGGGGGGACU 23 3797 myoC-4052 - UGUGGAUGAAGCAGGCCU 18 3798 myoC-4053 - CUGUGGAUGAAGCAGGCCU 19 3799 myoC-4054 - UGGCUGUGGAUGAAGCAGGCCU 22 3800 myoC-4055 - U UGGCUGUGGAUGAAGCAGGCCU 23 3801 myoC-4056 - CUUGGCUGUGGAUGAAGCAGGCCU 24 3802 myoC-4057 - ACGGACAU UGACUUGGCU 18 3803 myoC-4058 - CACGGACAUUGACU UGGCU 19 3804 myoC-2918 - ACACGGACAU UGACUUGGCU 20 1817 myoC-4059 - UACACGGACAU UGACUUGGCU 21 3805 myoC-4060 - CUACACGGACAUUGACU UGGCU 22 3806 myoC-4061 - CGGACAGUUCCCGUAUUCU 19 3807 myoC-6 - ACGGACAGUUCCCGUAU UCU 20 408 myoC-4062 - CACGGACAGUUCCCGUAUUCU 21 3808 myoC-4063 - CCACGGACAGUUCCCGUAUUCU 22 3809 myoC-4064 - ACCACGG ACAG U U CCCG U AU U CU 23 3810 myoC-4065 - U ACCACGG ACAG U UCCCG U AU U CU 24 3811 myoC-4066 - AGGAUGUGGAGAACUAGU 18 3812 myoC-4067 - CAGGAUGUGGAGAACUAGU 19 3813 myoC-4068 - CCAGGAUGUGGAGAACUAGU 20 3814 myoC-4069 - ACCAGGAUGUGGAGAACUAGU 21 3815 myoC-4070 - UACCAGGAUGUGGAGAACUAGU 22 3816 myoC-4071 - UU ACCAGGAUGUGGAGAACUAGU 23 3817 myoC-4072 - UU UACCAGGAUGUGGAGAACUAGU 24 3818 myoC-4073 - CCAGGCUCCAGAGAAGGU 18 3819 myoC-4074 - ACCAGGCUCCAGAGAAGGU 19 3820 myoC-4075 - CACCAGGCUCCAGAGAAGGU 20 3821 myoC-4076 - CCACCAGGCUCCAGAGAAGGU 21 3822 myoC-4077 - U G CCACCAG G CU CCAG AG A AG G U 23 3823 myoC-4078 - UACUGGCAAGUAUGGUGU 18 3824 myoC-4079 - UUACUGGCAAGUAUGGUGU 19 3825 myoC-4080 - AU UACUGGCAAGUAUGGUGU 20 3826 myoC-4081 - AAU UACUGGCAAGUAUGGUGU 21 3827 myoC-4082 - CAAU UACUGGCAAGUAUGGUGU 22 3828 myoC-4083 - ACAAU UACUGGCAAGUAUGGUGU 23 3829 myoC-4084 - AACAAUUACUGGCAAGUAUGGUGU 24 3830 myoC-4085 - CUCU UCCUUGAACU UUGU 18 3831 myoC-4086 - UCUCUUCCUUGAACUUUGU 19 3832 myoC-3193 - UUCUCUUCCUUGAACUUUGU 20 2939 myoC-4087 - CGUUCUCUUCCU UGAACU UUGU 22 3833 myoC-4088 - ACGU UCUCUUCCUUGAACUUUGU 23 3834 myoC-4089 - AACGUUCUCUUCCU UGAACU UUGU 24 3835 myoC-4090 - CGGAUGUCCGCCAGGU UU 18 3836 myoC-4091 - ACGGAUGUCCGCCAGGU UU 19 3837 myoC-4092 - CACGGAUGUCCGCCAGGUUU 20 3838 myoC-4093 - UGGCACGGAUGUCCGCCAGGUU U 23 3839 myoC-4094 - UUGGCACGGAUGUCCGCCAGG UUU 24 3840
Table 7G provides exemplary targeting domains for knocking out the MYOC gene selected according to the seven tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene) and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 7G
7th Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-4095 + G U AAA U U C AG A A A AG AAA 18 3841 myoC-4096 + GGUAAAUUCAGAAAAGAAA 19 3842 myoC-4097 + U GG U AAAU UCAG AAAAG AAA 20 3843 myoC-4098 + CU G G U AAA U U C AG A A A AG A A A 21 3844 myoC-4099 + CCUGGU AAAU UCAG AAAAG AAA 22 3845 myoC-4100 + U CCU G G U AAA U U C AG AAAAG AAA 23 3846 myoC-4101 + AUCCUGGU AAAU UCAG AAAAG AAA 24 3847 myoC-4102 + GACUCAGCGCCCUGGAAA 18 3848 myoC-4103 + GGACUCAGCGCCCUGGAAA 19 3849 myoC-4104 + UGGACUCAGCGCCCUGGAAA 20 3850 myoC-4105 + CUGGACUCAGCGCCCUGGAAA 21 3851 myoC-4106 + UCUGGACUCAGCGCCCUGGAAA 22 3852 myoC-4107 + U UCUGGACUCAGCGCCCUGGAAA 23 3853 myoC-4108 + GUUCUGGACUCAGCGCCCUGGAAA 24 3854 myoC-4109 + AUCCUGG U AAAU UCAG AA 18 3855 myoC-4110 + CAU CCU GG U AAAU UCAG AA 19 3856 myoC-4111 + ACAUCCUGG U AAAU UCAG AA 20 3857 myoC-4112 + CACAUCCUGGU AAA U U C AG A A 21 3858 myoC-4113 + CCACAUCCUGGUAAAUUCAGAA 22 3859 myoC-4114 + UCCACAUCCUGGUAAAU UCAGAA 23 3860 myoC-4115 + CUCCACAUCCUGGUAAAUUCAGAA 24 3861 myoC-4116 + CCCAC AAAG U U CAAG G AA 18 3862 myoC-4117 + UCCCACAAAGUU CAAG G A A 19 3863 myoC-4118 + U U CCCACAA AG U U CA AG G A A 20 3864 myoC-4119 + ACGUAGAAACUGCAUUAA 18 3865 myoC-4120 + CACGUAGAAACUGCAUUAA 19 3866 myoC-4121 + CCACGUAGAAACUGCAUUAA 20 3867 myoC-4122 + UCCACGUAGAAACUGCAUUAA 21 3868 myoC-4123 + UUCCACGUAGAAACUGCAUUAA 22 3869 myoC-4124 + AU UCCACGUAGAAACUGCAU UAA 23 3870 myoC-4125 + AAUUCCACGUAGAAACUGCAUUAA 24 3871 myoC-4126 + UAUAUUCGAUGCUGGCCA 18 3872 myoC-4127 + U UAUAU UCGAUGCUGGCCA 19 3873 myoC-4128 + CUUAUAUUCGAUGCUGGCCA 20 3874 myoC-4129 + ACUUAUAUUCGAUGCUGGCCA 21 3875 myoC-4130 + UACUUAUAUUCGAUGCUGGCCA 22 3876 myoC-4131 + UUACU UAUAU UCGAUGCUGGCCA 23 3877 myoC-4132 + CUUACUUAUAUUCGAUGCUGGCCA 24 3878 myoC-4133 + U U CAAG UUGUCCCAGGCA 18 3879 myoC-4134 + GUUCAAGUUGUCCCAGGCA 19 3880 myoC-2973 + UGUUCAAGU UGUCCCAGGCA 20 1858 myoC-4135 + AUGUUCAAGUUGUCCCAGGCA 21 3881 myoC-4136 + CAUGUUCAAGUUGUCCCAGGCA 22 3882 myoC-4137 + CCAUGUUCAAG UUGUCCCAGGCA 23 3883 myoC-4138 + ACCAUGUUCAAGUUGUCCCAGGCA 24 3884 myoC-4139 + AG AAACUGCAU U AAA AG A 18 3885 myoC-4140 + U AG A A AC U G C A U U A A A AG A 19 3886 myoC-4141 + GU AG AAACUGCAU UAAAAG A 20 3887 myoC-4142 + CGUAGAAACUGCAUU A A A AG A 21 3888 myoC-4143 + ACGU AG AAACUGCAU UAAAAG A 22 3889 myoC-4144 + CACGU AG AAACUGCAU UAAAAG A 23 3890 myoC-4145 + CCACGU AG AAACUGCAU UAAAAG A 24 3891 myoC-4146 + CUCUGGGU UCAGUUUGGA 18 3892 myoC-4147 + UCUCUGGGUUCAGUU UGGA 19 3893 myoC-4148 + UUCUCUGGGUUCAGU UUGGA 20 3894 myoC-4149 + AUUCUCUGGGUUCAGUU UGGA 21 3895 myoC-4150 + GAUUCUCUGGGUUCAGUUUGGA 22 3896 myoC-4151 + AGAUUCUCUGGGUUCAGUUUGGA 23 3897 myoC-4152 + CAGAUUCUCUGGGUUCAGUUUGGA 24 3898 myoC-4153 + ACAUCCCAUAAAUGCUGA 18 3899 myoC-4154 + AACAUCCCAUAAAUGCUGA 19 3900 myoC-4155 + AAACAUCCCAUAAAUGCUGA 20 3901 myoC-4156 + UAAACAUCCCAUAAAUGCUGA 21 3902 myoC-4157 + UUAAACAUCCCAUAAAUGCUGA 22 3903 myoC-4158 + AU UAAACAUCCCAUAAAUGCUGA 23 3904 myoC-4159 + CAU UAAACAUCCCAUAAAUGCUGA 24 3905 myoC-4160 + ACU UAUAGCGGUUCU UGA 18 3906 myoC-4161 + UACUUAUAGCGGUUCUUGA 19 3907 myoC-2968 + GUACUUAUAGCGGU UCUUGA 20 1855 myoC-4162 + UGUACUUAUAGCGGUUCUUGA 21 3908 myoC-4163 + CUGUACUUAUAGCGGUUCU UGA 22 3909 myoC-4164 + GCUGUACUUAUAGCGGUUCUUGA 23 3910 myoC-4165 + UGCUGUACU UAUAGCGGUUCUUGA 24 3911 myoC-4166 + GUAGCCACCCCAAGAAUA 18 3912 myoC-4167 + UGUAGCCACCCCAAGAAUA 19 3913 myoC-20 + GUGUAGCCACCCCAAGAAUA 20 390 myoC-4168 + CG UGUAGCCACCCCAAGAAUA 21 3914 myoC-4169 + CCG U G U AGCCACCCCAAG AAU A 22 3915 myoC-4170 + UCCGUGUAGCCACCCCAAGAAUA 23 3916 myoC-4171 + GUCCGUGUAGCCACCCCAAGAAUA 24 3917 myoC-4172 + GUUCAUCCUUCUGGAU UA 18 3918 myoC-4173 + UGUUCAUCCUUCUGGAUUA 19 3919 myoC-3037 + AUGU UCAUCCUUCUGGAUUA 20 2814 myoC-4174 + CAUGUUCAUCCUUCUGGAUUA 21 3920 myoC-4175 + CCAUGUUCAUCCUUCUGGAU UA 22 3921 myoC-4176 + ACCAUGUUCAUCCUUCUGGAUUA 23 3922 myoC-4177 + GACCAUGUUCAUCCUUCUGGAUUA 24 3923 myoC-4178 + CCCAAAU CACAAG AAAAC 18 3924 myoC-4179 + CCCCAAA U CACAAG AAAAC 19 3925 myoC-4180 + GCCCCAAAU CACAAG AAAAC 20 3926 myoC-4181 + U GCCCCAAAU CACAAG AAAAC 21 3927 myoC-4182 + U U G CCCCAA AU CACAAG AAAAC 22 3928 myoC-4183 + U U U G CCCCAAA U CACAAG A A A AC 23 3929 myoC-4184 + U U U U G CCCCAAA U CACAAG A A A AC 24 3930 myoC-4185 + U UCUGG AU UAAUG AAAAC 18 3931 myoC-4186 + CUUCUGGAUUAAUG AAAAC 19 3932 myoC-3036 + CCU UCUGG AU UAAUG AAAAC 20 2813 myoC-4187 + UCCUUCUGGAU UAAUGAAAAC 21 3933 myoC-4188 + AUCCU UCUGGAUUAAUGAAAAC 22 3934 myoC-4189 + CAUCCU UCUGGAUUAAUGAAAAC 23 3935 myoC-4190 + UCAUCCU UCUGGAUUAAUGAAAAC 24 3936 myoC-4191 + GCUUU UGCCCCAAAUCAC 18 3937 myoC-4192 + AGCU UUUGCCCCAAAUCAC 19 3938 myoC-4193 + CAG CU U U U G CCCCAA AU CAC 20 3939 myoC-4194 + ACAGCUUUUG CCCCAAA U C AC 21 3940 myoC-4195 + UACAGCUUUUG CCCCAAA U C AC 22 3941 myoC-4196 + UUACAGCUUUUGCCCCAAAUCAC 23 3942 myoC-4197 + CU U ACAG CU U U U G CCCCAA AU CAC 24 3943 myoC-4198 + UAGCCACCCCAAGAAUAC 18 3944 myoC-4199 + GU AGCCACCCCAAG AAU AC 19 3945 myoC-21 + UG UAGCCACCCCAAGAAUAC 20 418 myoC-4200 + GUGU AGCCACCCCAAG AAU AC 21 3946 myoC-4201 + CGUG UAGCCACCCCAAGAAUAC 22 3947 myoC-4202 + CCG U G U AG CCACCCCAAG A AU AC 23 3948 myoC-4203 + U CCG U G U AG CCACCCCAAG A AU AC 24 3949 myoC-4204 + UCGGUGCUGUAAAUGACC 18 3950 myoC-4205 + AUCGGUGCUG UAAAUGACC 19 3951 myoC-2929 + CAUCGGUGCUGUAAAUGACC 20 1825 myoC-4206 + UCAUCGGUGCUGUAAAUGACC 21 3952 myoC-4207 + CUCAUCGGUGCUGUAAAUGACC 22 3953 myoC-4208 + CCUCAUCGGUGCUGUAAAUGACC 23 3954 myoC-4209 + GCCUCAUCGGUGCUGUAAAUGACC 24 3955 myoC-4210 + CUUCAGCCUGCUCCCCCC 18 3956 myoC-4211 + CCUUCAGCCUGCUCCCCCC 19 3957 myoC-421 + CCCUUCAGCCUGCUCCCCCC 20 785 myoC-4212 + UCCCUUCAGCCUGCUCCCCCC 21 3958 myoC-4213 + CUCCCUUCAGCCUGCUCCCCCC 22 3959 myoC-4214 + UCUCCCU UCAGCCUGCUCCCCCC 23 3960 myoC-4215 + CUCUCCCUUCAGCCUGCUCCCCCC 24 3961 myoC-4216 + CCUUCAGCCUGCUCCCCC 18 3962 myoC-4217 + CCCUUCAGCCUGCUCCCCC 19 3963 myoC-3033 + UCCCUUCAGCCUGCUCCCCC 20 2811 myoC-4218 + CUCCCUUCAGCCUGCUCCCCC 21 3964 myoC-4219 + UCUCCCUUCAGCCUGCUCCCCC 22 3965 myoC-4220 + CUCUCCCU UCAGCCUGCUCCCCC 23 3966 myoC-4221 + GCUCUCCCUUCAGCCUGCUCCCCC 24 3967 myoC-4222 + GU UCUGGACUCAGCGCCC 18 3968 myoC-4223 + AGUUCUGGACUCAGCGCCC 19 3969 myoC-459 + CAGU UCUGGACUCAGCGCCC 20 801 myoC-4224 + ACAGUUCUGGACUCAGCGCCC 21 3970 myoC-4225 + GACAGU UCUGGACUCAGCGCCC 22 3971 myoC-4226 + UGACAGU UCUGGACUCAGCGCCC 23 3972 myoC-4227 + AUGACAGUUCUGGACUCAGCGCCC 24 3973 myoC-4228 + CUGCUCCCCCCAGGAGCC 18 3974 myoC-4229 + CCUGCUCCCCCCAGGAGCC 19 3975 myoC-3031 + GCCUGCUCCCCCCAGGAGCC 20 2810 myoC-4230 + AGCCUGCUCCCCCCAGGAGCC 21 3976 myoC-4231 + CAGCCUGCUCCCCCCAGGAGCC 22 3977 myoC-4232 + UCAGCCUGCUCCCCCCAGGAGCC 23 3978 myoC-4233 + U UCAGCCUGCUCCCCCCAGGAGCC 24 3979 myoC-4234 + AGUUCUGGACUCAGCGCC 18 3980 myoC-4235 + CAGU UCUGGACUCAGCGCC 19 3981 myoC-4236 + ACAGUUCUGGACUCAGCGCC 20 3982 myoC-4237 + GACAGUUCUGGACUCAGCGCC 21 3983 myoC-4238 + UGACAGUUCUGGACUCAGCGCC 22 3984 myoC-4239 + AUGACAGU UCUGGACUCAGCGCC 23 3985 myoC-4240 + UAUGACAGU UCUGGACUCAGCGCC 24 3986 myoC-4241 + GCAAAGAGCUUCU UCUCC 18 3987 myoC-4242 + GGCAAAGAGCUUCUUCUCC 19 3988 myoC-61 + AGGCAAAGAGCU UCUUCUCC 20 458 myoC-4243 + CAGGCAAAGAGCUUCU UCUCC 21 3989 myoC-4244 + CCAGGCAAAG AGCU UCU UCUCC 22 3990 myoC-4245 + CCCAGGCAAAGAGCU UCUUCUCC 23 3991 myoC-4246 + UCCCAGGCAAAGAGCUUCUUCUCC 24 3992 myoC-4247 + AGCUCGGACUUCAGU UCC 18 3993 myoC-4248 + UAGCUCGGACU UCAGU UCC 19 3994 myoC-331 + UUAGCUCGGACUUCAG UUCC 20 717 myoC-4249 + GUUAGCUCGGACUUCAGUUCC 21 3995 myoC-4250 + AGUUAGCUCGGACUUCAGUUCC 22 3996 myoC-4251 + CAGU UAGCUCGGACUUCAGUUCC 23 3997 myoC-4252 + UCAG UUAGCUCGGACU UCAG UUCC 24 3998 myoC-4253 + CUUCAAAAUUCGGGAAGC 18 3999 myoC-4254 + CCU UCAAAAUUCGGGAAGC 19 4000 myoC-329 + UCCUUCAAAAUUCGGGAAGC 20 715 myoC-4255 + CUCCUUCAAAAUUCGGGAAGC 21 4001 myoC-4256 + UCUCCU UCAAAAUUCGGGAAGC 22 4002 myoC-4257 + CUCUCCUUCAAAAU UCGGGAAGC 23 4003 myoC-4258 + GCUCUCCUUCAAAAUUCGGGAAGC 24 4004 myoC-4259 + GGAGCCUGGUGGCACAGC 18 4005 myoC-4260 + UGGAGCCUGGUGGCACAGC 19 4006 myoC-1701 + CUGGAGCCUGGUGGCACAGC 20 1953 myoC-4261 + UCUGGAGCCUGGUGGCACAGC 21 4007 myoC-4262 + CUCUGGAGCCUGGUGGCACAGC 22 4008 myoC-4263 + UCUCUGGAGCCUGGUGGCACAGC 23 4009 myoC-4264 + U UCUCUGGAGCCUGGUGGCACAGC 24 4010 myoC-4265 + UGCCAUUGCCUGUACAGC 18 4011 myoC-4266 + CUGCCAU UGCCUGUACAGC 19 4012 myoC-3030 + UCUGCCAU UGCCUGUACAGC 20 2809 myoC-4267 + UUCUGCCAUUGCCUGUACAGC 21 4013 myoC-4268 + CU UCUGCCAUUGCCUGUACAGC 22 4014 myoC-4269 + CCUUCUGCCAUUGCCUGUACAGC 23 4015 myoC-4270 + UCCU UCUGCCAUUGCCUGUACAGC 24 4016 myoC-4271 + GUUUCUGCUGUUCUCAGC 18 4017 myoC-4272 + UGUU UCUGCUGUUCUCAGC 19 4018 myoC-4273 + UUGUUUCUGCUGUUCUCAGC 20 4019 myoC-4274 + AUUGU UUCUGCUGUUCUCAGC 21 4020 myoC-4275 + AAUUGUU UCUGCUGUUCUCAGC 22 4021 myoC-4276 + UAAUUGU UUCUGCUGU UCUCAGC 23 4022 myoC-4277 + GUAAUUGUU UCUGCUGUUCUCAGC 24 4023 myoC-4278 + GCAGGAACUUCAGUUAGC 18 4024 myoC-4279 + AGCAGGAACUUCAGUUAGC 19 4025 myoC-4280 + AAGCAGGAACU UCAGUUAGC 20 4026 myoC-4281 + GAAGCAGGAACUUCAGU UAGC 21 4027 myoC-4282 + G G A AG C AG G A AC U U C AG U U AG C 22 4028 myoC-4283 + GGGAAGCAGGAACUUCAGUUAGC 23 4029 myoC-4284 + CGGGAAGCAGGAACUUCAGUUAGC 24 4030 myoC-4285 + GUGUAGGGGUAGGUGGGC 18 4031 myoC-4286 + GGUGUAGGGGUAGGUGGGC 19 4032 myoC-4287 + GGGUGUAGGGGUAGGUGGGC 20 4033 myoC-4288 + UGGGUGUAGGGGUAGGUGGGC 21 4034 myoC-4289 + CUGGGUGUAGGGGUAGGUGGGC 22 4035 myoC-4290 + CCUGGGUG UAGGGGUAGGUGGGC 23 4036 myoC-4291 + UCCUGGGUGUAGGGGUAGGUGGGC 24 4037 myoC-4292 + CU UAUAUUCGAUGCUGGC 18 4038 myoC-4293 + ACU UAUAUUCGAUGCUGGC 19 4039 myoC-4294 + UACUUAUAUUCGAUGCUGGC 20 4040 myoC-4295 + U UACUUAUAUUCGAUGCUGGC 21 4041 myoC-4296 + CUUACUUAUAUUCGAUGCUGGC 22 4042 myoC-4297 + UCUUACUUAUAU UCGAUGCUGGC 23 4043 myoC-4298 + AUCUUACUUAUAUUCGAUGCUGGC 24 4044 myoC-4299 + GGUAACCAUGUAACAUGC 18 4045 myoC-4300 + UGGUAACCAUGUAACAUGC 19 4046 myoC-4301 + GUGGUAACCAUGUAACAUGC 20 4047 myoC-4302 + UGUGGUAACCAUGUAACAUGC 21 4048 myoC-4303 + U UG UGGU AACCAUG U AACAUGC 22 4049 myoC-4304 + CUUGUGGUAACCAUGUAACAUGC 23 4050 myoC-4305 + GCUUGUGGUAACCAUGUAACAUGC 24 4051 myoC-4306 + G A A AG C AG U C A A AG C U G C 18 4052 myoC-4307 + GGAAAGCAGUCAAAGCUGC 19 4053 myoC-3034 + UGGAAAGCAGU C A A AG C U G C 20 2812 myoC-4308 + U U G G A A AG C AG U C A A AG C U G C 21 4054 myoC-4309 + CUUGGAAAGCAGUCAAAGCUGC 22 4055 myoC-4310 + AC U U G G A A AG C AG U C A A AG C U G C 23 4056 myoC-4311 + AACUUGGAAAGCAGUCAAAGCUGC 24 4057 myoC-4312 + UUGGAGGCUUU UCACAUC 18 4058 myoC-4313 + CUUGGAGGCU UUUCACAUC 19 4059 myoC-2976 + GCUUGGAGGCU UUUCACAUC 20 1860 myoC-4314 + AGCU UGGAGGCUUU UCACAUC 21 4060 myoC-4315 + CAGCUUGGAGGCUUUUCACAUC 22 4061 myoC-4316 + ACAGCU UGGAGGCUUUUCACAUC 23 4062 myoC-4317 + UACAGCUUGGAGGCUUUUCACAUC 24 4063 myoC-4318 + GUGUCUCCCUCUCCACUC 18 4064 myoC-4319 + GGUGUCUCCCUCUCCACUC 19 4065 myoC-4320 + CGGUGUCUCCCUCUCCACUC 20 4066 myoC-4321 + CCGGUGUCUCCCUCUCCACUC 21 4067 myoC-4322 + ACCGGUGUCUCCCUCUCCACUC 22 4068 myoC-4323 + UACCGGUGUCUCCCUCUCCACUC 23 4069 myoC-4324 + AUACCGGUGUCUCCCUCUCCACUC 24 4070 myoC-4325 + GUCCGUGGUAGCCAGCUC 18 4071 myoC-4326 + UGUCCGUGGUAGCCAGCUC 19 4072 myoC-2924 + CUGUCCG UGGUAGCCAGCUC 20 1822 myoC-4327 + ACUGUCCGUGGUAGCCAGCUC 21 4073 myoC-4328 + AACUGUCCGUGGUAGCCAGCUC 22 4074 myoC-4329 + GAACUGUCCGUGGUAGCCAGCUC 23 4075 myoC-4330 + GGAACUGUCCGUGGUAGCCAGCUC 24 4076 myoC-4331 + CUGCAUUCUUACCU UCUC 18 4077 myoC-4332 + UCUGCAUUCUUACCUUCUC 19 4078 myoC-3184 + CUCUGCAU UCUUACCUUCUC 20 2930 myoC-4333 + ACUCUGCAUUCUUACCUUCUC 21 4079 myoC-4334 + CACUCUGCAUUCUUACCUUCUC 22 4080 myoC-4335 + CCACUCUGCAUUCUUACCUUCUC 23 4081 myoC-4336 + CCCACUCUGCAUUCUUACCU UCUC 24 4082 myoC-4337 + GGCAAAGAGCUUCUUCUC 18 4083 myoC-4338 + AGGCAAAGAGCUUCU UCUC 19 4084 myoC-2972 + CAGGCAAAGAGCU UCUUCUC 20 1857 myoC-4339 + CCAGGCAAAGAGCUUCUUCUC 21 4085 myoC-4340 + CCCAGGCAAAGAGCU UCUUCUC 22 4086 myoC-4341 + UCCCAGGCAAAGAGCUUCUUCUC 23 4087 myoC-4342 + GUCCCAGGCAAAGAGCUUCUUCUC 24 4088 myoC-4343 + CGAGCAGUGUCUCGGGUC 18 4089 myoC-4344 + CCGAGCAGUGUCUCGGG UC 19 4090 myoC-203 + CCCGAGCAGUGUCUCGGGUC 20 589 myoC-4345 + GCCCGAGCAGUGUCUCGGGUC 21 4091 myoC-4346 + AGCCCGAGCAGUGUCUCGGGUC 22 4092 myoC-4347 + CAGCCCGAGCAGUGUCUCGGGUC 23 4093 myoC-4348 + ACAGCCCGAGCAGUGUCUCGGGUC 24 4094 myoC-4349 + GGCUCUCCU UCAAAAU UC 18 4095 myoC-4350 + GGGCUCUCCUUCAAAAU UC 19 4096 myoC-328 + UGGGCUCUCCUUCAAAAUUC 20 714 myoC-4351 + AUGGGCUCUCCUUCAAAAUUC 21 4097 myoC-4352 + GAUGGGCUCUCCU UCAAAAUUC 22 4098 myoC-4353 + AGAUGGGCUCUCCUUCAAAAU UC 23 4099 myoC-4354 + CAGAUGGGCUCUCCU UCAAAAUUC 24 4100 myoC-4355 + UAGCUCGGACU UCAGUUC 18 4101 myoC-4356 + UUAGCUCGGACUUCAGUUC 19 4102 myoC-4357 + GU UAGCUCGGACUUCAGUUC 20 4103 myoC-4358 + AGUUAGCUCGGACUUCAGUUC 21 4104 myoC-4359 + CAGU UAGCUCGGACUUCAGUUC 22 4105 myoC-4360 + UCAGUUAGCUCGGACUUCAGUUC 23 4106 myoC-4361 + UUCAGU UAGCUCGGACUUCAGU UC 24 4107 myoC-4362 + GCAAGAGCAAUGGU UUUC 18 4108 myoC-4363 + UGCAAGAGCAAUGGU UUUC 19 4109 myoC-507 + AUGCAAGAGCAAUGGU UUUC 20 849 myoC-4364 + CAUGCAAGAGCAAUGGU UUUC 21 4110 myoC-4365 + ACAUGCAAGAGCAAUGGU UUUC 22 4111 myoC-4366 + A AC A U G C A AG AG C A A UGGUUU UC 23 4112 myoC-4367 + UAACAUGCAAGAGCAAUGGUUU UC 24 4113 myoC-4368 + CCUUCAAAAUUCGGGAAG 18 4114 myoC-4369 + UCCUUCAAAAUUCGGGAAG 19 4115 myoC-4370 + CUCCUUCAAAAU UCGGGAAG 20 4116 myoC-4371 + UCUCCU UCAAAAU UCGGGAAG 21 4117 myoC-4372 + CUCUCCU UCAAAAUUCGGGAAG 22 4118 myoC-4373 + GCUCUCCUUCAAAAUUCGGGAAG 23 4119 myoC-4374 + GGCUCUCCUUCAAAAUUCGGGAAG 24 4120 myoC-4375 + CACUCCUGAGAUAGCCAG 18 4121 myoC-4376 + CCACUCCUGAGAUAGCCAG 19 4122 myoC-4377 + UCCACUCCUGAGAUAGCCAG 20 4123 myoC-4378 + CU CCACU CCU G AG AU AG CCAG 21 4124 myoC-4379 + UCUCCACUCCUGAGAUAGCCAG 22 4125 myoC-4380 + CUCUCCACUCCUGAGAUAGCCAG 23 4126 myoC-4381 + CCUCUCCACUCCUGAGAUAGCCAG 24 4127 myoC-4382 + AUAUUCGAUGCUGGCCAG 18 4128 myoC-4383 + UAUAUUCGAUGCUGGCCAG 19 4129 myoC-503 + UUAUAUUCGAUGCUGGCCAG 20 845 myoC-4384 + CUUAUAUUCGAUGCUGGCCAG 21 4130 myoC-4385 + ACUUAUAUUCGAUGCUGGCCAG 22 4131 myoC-4386 + UACUUAUAUUCGAUGCUGGCCAG 23 4132 myoC-4387 + U UACUUAUAUUCGAUGCUGGCCAG 24 4133 myoC-4388 + UCCUGGGUGUAGGGGUAG 18 4134 myoC-4389 + CUCCUGGGUGUAGGGGUAG 19 4135 myoC-4390 + UCUCCUGGGUGUAGGGGUAG 20 4136 myoC-4391 + GUCUCCUGGGUGUAGGGGUAG 21 4137 myoC-4392 + GGUCUCCUGGGUGUAGGGGUAG 22 4138 myoC-4393 + UGG UCUCCUGGGUGUAGGGGUAG 23 4139 myoC-4394 + GUGGUCUCCUGGGUGUAGGGGUAG 24 4140 myoC-4395 + AAG U G U CCA AA U U CCACG 18 4141 myoC-4396 + A A AG U G U CCA A A U U CCACG 19 4142 myoC-4397 + C A A AG U G U CCA A A U U CCACG 20 4143 myoC-4398 + CCA A AG UGUCCAAAUUCCACG 21 4144 myoC-4399 + G CC A A AG U G U CC A A A U U CC ACG 22 4145 myoC-4400 + GGCCAAAG UGUCCAAAU UCCACG 23 4146 myoC-4401 + AGGCCAAAGUGU CCA A A U U CCACG 24 4147 myoC-4402 + U U CCC AC A A AG U U C A AG G 18 4148 myoC-4403 + A U U CCC ACAA AG U U CAAGG 19 4149 myoC-4404 + G AU U CCCAC AAAG U U CAAG G 20 4150 myoC-4405 + AGAGCAAUGGUUUUCAGG 18 4151 myoC-4406 + AAGAGCAAUGGU UUUCAGG 19 4152 myoC-4407 + CAAG AGCAAUGGU UUUCAGG 20 4153 myoC-4408 + GCAAGAGCAAUGGUUU UCAGG 21 4154 myoC-4409 + UGCAAGAGCAAUGGUU UUCAGG 22 4155 myoC-4410 + AUGCAAGAGCAAUGGUUU UCAGG 23 4156 myoC-4411 + CAUGCAAGAGCAAUGGU UUUCAGG 24 4157 myoC-4412 + UACAAGGUGCCACAGAUG 18 4158 myoC-4413 + GUACAAGGUGCCACAGAUG 19 4159 myoC-3001 + U G U ACAAG G U G CC ACAG AU G 20 2794 myoC-4414 + GUGUACAAGGUGCCACAGAUG 21 4160 myoC-4415 + GGUGUACAAGGUGCCACAGAUG 22 4161 myoC-4416 + CG G U G U ACAAG G U G CC AC AG AUG 23 4162 myoC-4417 + ACGGUGUACAAGGUGCCACAGAUG 24 4163 myoC-4418 + GUCAUACUCAAAAACCUG 18 4164 myoC-4419 + GGUCAUACUCAAAAACCUG 19 4165 myoC-4420 + AGGUCAUACUCAAAAACCUG 20 4166 myoC-4421 + GAGGUCAUACUCAAAAACCUG 21 4167 myoC-4422 + UGAGGUCAUACU C A A A A ACC U G 22 4168 myoC-4423 + AUG AGGUCAUACUCAAAAACCUG 23 4169 myoC-4424 + G AUG AGGUCAUACUCAAAAACCUG 24 4170 myoC-4425 + CCCUGCAUAAACUGGCUG 18 4171 myoC-4426 + GCCCUGCAUAAACUGGCUG 19 4172 myoC-4427 + AGCCCUGCAUAAACUGGCUG 20 4173 myoC-4428 + UAGCCCUGCAUAAACUGGCUG 21 4174 myoC-4429 + GUAGCCCUGCAUAAACUGGCUG 22 4175 myoC-4430 + GGU AGCCCUGCAUAAACUGGCUG 23 4176 myoC-4431 + GGGUAGCCCUGCAUAAACUGGCUG 24 4177 myoC-4432 + AGUUGACGGUAGCAUCUG 18 4178 myoC-4433 + AAGUUGACGGUAGCAUCUG 19 4179 myoC-2965 + AAAGUUGACGGUAGCAUCUG 20 1853 myoC-4434 + CAAAGUUGACGGUAGCAUCUG 21 4180 myoC-4435 + GCAAAGUUGACGGUAGCAUCUG 22 4181 myoC-4436 + AGCAAAGUUGACGGUAGCAUCUG 23 4182 myoC-4437 + AAGCAAAGU UGACGGUAGCAUCUG 24 4183 myoC-4438 + CACGUGGUCUCCUGGGUG 18 4184 myoC-4439 + CCACGUGGUCUCCUGGGUG 19 4185 myoC-4440 + UCCACGUGG UCUCCUGGGUG 20 4186 myoC-4441 + CUCCACGUGGUCUCCUGGGUG 21 4187 myoC-4442 + UCUCCACGUGGUCUCCUGGGUG 22 4188 myoC-4443 + UUCUCCACGUGGUCUCCUGGGUG 23 4189 myoC-4444 + AUUCUCCACGUGGUCUCCUGGGUG 24 4190 myoC-4445 + GAGGCUU UUCACAUCUUG 18 4191 myoC-4446 + GGAGGCUUUUCACAUCUUG 19 4192 myoC-2974 + UGGAGGCUUUUCACAUCUUG 20 1859 myoC-4447 + UUGGAGGCUUU UCACAUCUUG 21 4193 myoC-4448 + CUUGGAGGCU UUUCACAUCUUG 22 4194 myoC-4449 + GCUUGGAGGCU UUUCACAUCU UG 23 4195 myoC-4450 + AGCU UGGAGGCUU UUCACAUCUUG 24 4196 myoC-4451 + UUCUCUGGGUUCAGU U UG 18 4197 myoC-4452 + AUUCUCUGGGU UCAGUUUG 19 4198 myoC-4453 + GAUUCUCUGGGUUCAGUUUG 20 4199 myoC-4454 + AGAUUCUCUGGG UUCAGUU UG 21 4200 myoC-4455 + CAGAU UCUCUGGGUUCAGUUUG 22 4201 myoC-4456 + CCAGAUUCUCUGGGUUCAGUUUG 23 4202 myoC-4457 + UCCAGAUUCUCUGGGUUCAGUU UG 24 4203 myoC-4458 + UGGGCUCUCCU UCAAAAU 18 4204 myoC-4459 + AUGGGCUCUCCUUCAAAAU 19 4205 myoC-4460 + GAUGGGCUCUCCUUCAAAAU 20 4206 myoC-4461 + AGAUGGGCUCUCCUUCAAAAU 21 4207 myoC-4462 + CAGAUGGGCUCUCCUUCAAAAU 22 4208 myoC-4463 + CCAGAUGGGCUCUCCUUCAAAAU 23 4209 myoC-4464 + GCCAGAUGGGCUCUCCU UCAAAAU 24 4210 myoC-4465 + UGUAGCCACCCCAAGAAU 18 4211 myoC-4466 + GUGUAGCCACCCCAAGAAU 19 4212 myoC-2927 + CG UGUAGCCACCCCAAGAAU 20 1823 myoC-4467 + CCG UGUAGCCACCCCAAGAAU 21 4213 myoC-4468 + UCCG UGUAGCCACCCCAAGAAU 22 4214 myoC-4469 + G U CCG U G U AG CCACCCCAAG A AU 23 4215 myoC-4470 + UGUCCGUGUAG CCACCCCAAG A AU 24 4216 myoC-4471 + GUAUUCUAUCUGAAGCAU 18 4217 myoC-4472 + UGUAUUCUAUCUGAAGCAU 19 4218 myoC-4473 + CUGUAU UCUAUCUGAAGCAU 20 4219 myoC-4474 + ACUGUAUUCUAUCUGAAGCAU 21 4220 myoC-4475 + AACUGUAUUCUAUCUGAAGCAU 22 4221 myoC-4476 + CAACUGUAU UCUAUCUGAAGCAU 23 4222 myoC-4477 + CCAACUGUAUUCUAUCUGAAGCAU 24 4223 myoC-4478 + GACCCAACUGUAU UCUAU 18 4224 myoC-4479 + AGACCCAACUGUAUUCUAU 19 4225 myoC-4480 + GAGACCCAACUGUAU UCUAU 20 4226 myoC-4481 + UGAGACCCAACUGUAUUCUAU 21 4227 myoC-4482 + GUGAGACCCAACUGUAU UCUAU 22 4228 myoC-4483 + UGUGAGACCCAACUGUAUUCUAU 23 4229 myoC-4484 + AUGUGAGACCCAACUGUAUUCUAU 24 4230 myoC-4485 + CAGUGGCCUAGGCAGUAU 18 4231 myoC-4486 + CCAGUGGCCUAGGCAGUAU 19 4232 myoC-4487 + UCCAGUGGCCUAGGCAGUAU 20 4233 myoC-4488 + UUCCAGUGGCCUAGGCAGUAU 21 4234 myoC-4489 + U UUCCAGUGGCCUAGGCAGUAU 22 4235 myoC-4490 + CUUUCCAGUGGCCUAGGCAGUAU 23 4236 myoC-4491 + GCUU UCCAGUGGCCUAGGCAG UAU 24 4237 myoC-4492 + AUAAAGGAUAUUUAU UAU 18 4238 myoC-4493 + GAUAAAGGAUAUU UAU UAU 19 4239 myoC-4494 + AGAUAAAGGAUAUUUAUUAU 20 4240 myoC-4495 + AAGAUAAAGGAUAUUUAUUAU 21 4241 myoC-4496 + GAAG AUAAAGGAUAUUUAUUAU 22 4242 myoC-4497 + AG AAGAUAAAGGAUAUU UAUUAU 23 4243 myoC-4498 + CAGAAGAUAAAGGAUAUUUAU UAU 24 4244 myoC-4499 + CACAAUGUAAAGGGUUAU 18 4245 myoC-4500 + UCACAAUGUAAAGGGU UAU 19 4246 myoC-4501 + UUCACAAUGUAAAGGGUUAU 20 4247 myoC-4502 + UU UCACAAUGUAAAGGGUUAU 21 4248 myoC-4503 + AU UUCACAAUGUAAAGGGU UAU 22 4249 myoC-4504 + UAU UUCACAAUGUAAAGGGUUAU 23 4250 myoC-4505 + U UAUUUCACAAUGUAAAGGGUUAU 24 4251 myoC-4506 + UCUGGAUUAAUGAAAACU 18 4252 myoC-4507 + U UCUGG AU U AAUG AAAACU 19 4253 myoC-511 + CU UCUGGAUUAAUGAAAACU 20 853 myoC-4508 + CCU UCUGGAUUAAUGAAAACU 21 4254 myoC-4509 + UCCU UCUGG AU U AAUG AAAACU 22 4255 myoC-4510 + AUCCUUCUGGAUUAAUGAAAACU 23 4256 myoC-4511 + CAUCCUUCUGGAUUAAUGAAAACU 24 4257 myoC-4512 + UAGGCAGUAUGUGAACCU 18 4258 myoC-4513 + CUAGGCAGUAUGUGAACCU 19 4259 myoC-4514 + CCUAGGCAGUAUGUGAACCU 20 4260 myoC-4515 + GCCUAGGCAGUAUGUGAACCU 21 4261 myoC-4516 + GGCCUAGGCAGUAUGUGAACCU 22 4262 myoC-4517 + UGGCCUAGGCAGUAUG UGAACCU 23 4263 myoC-4518 + GUGGCCUAGGCAGUAUGUGAACCU 24 4264 myoC-4519 + GCCAU UGCCUGUACAGCU 18 4265 myoC-4520 + UGCCAUUGCCUGUACAGCU 19 4266 myoC-422 + CUGCCAUUGCCUGUACAGCU 20 786 myoC-4521 + UCUGCCAU UGCCUGUACAGCU 21 4267 myoC-4522 + U UCUGCCAUUGCCUGUACAGCU 22 4268 myoC-4523 + CU UCUGCCAUUGCCUGUACAGCU 23 4269 myoC-4524 + CCUUCUGCCAU UGCCUGUACAGCU 24 4270 myoC-4525 + UGGAGGCUUUUCACAUCU 18 4271 myoC-4526 + U UGGAGGCUUU UCACAUCU 19 4272 myoC-59 + CUUGGAGGCU UUUCACAUCU 20 457 myoC-4527 + GCU UGGAGGCU UUUCACAUCU 21 4273 myoC-4528 + AGCU UGGAGGCUUUUCACAUCU 22 4274 myoC-4529 + CAGCUUGGAGGCUUUUCACAUCU 23 4275 myoC-4530 + ACAGCUUGGAGGCU UUUCACAUCU 24 4276 myoC-4531 + GAGCAGUGUCUCGGGUCU 18 4277 myoC-4532 + CGAGCAGUGUCUCGGGUCU 19 4278 myoC-204 + CCGAGCAGUGUCUCGGGUCU 20 590 myoC-4533 + CCCGAGCAGUGUCUCGGGUCU 21 4279 myoC-4534 + GCCCGAGCAGUGUCUCGGGUCU 22 4280 myoC-4535 + AGCCCGAGCAGUGUCUCGGGUCU 23 4281 myoC-4536 + CAGCCCGAGCAGUGUCUCGGGUCU 24 4282 myoC-4537 + UCUGCAUUCUUACCUUCU 18 4283 myoC-4538 + CUCUGCAU UCUUACCUUCU 19 4284 myoC-4539 + ACUCUGCAUUCUUACCUUCU 20 4285 myoC-4540 + CACUCUGCAUUCUUACCUUCU 21 4286 myoC-4541 + CCACUCUGCAUUCUUACCUUCU 22 4287 myoC-4542 + CCCACUCUGCAU UCUUACCUUCU 23 4288 myoC-4543 + CCCCACUCUGCAU UCUUACCUUCU 24 4289 myoC-4544 + AGAU UCUCUGGGUUCAGU 18 4290 myoC-4545 + CAGAUUCUCUGGGUUCAGU 19 4291 myoC-4546 + CCAGAU UCUCUGGGUUCAGU 20 4292 myoC-4547 + UCCAGAU UCUCUGGGU UCAGU 21 4293 myoC-4548 + UUCCAGAUUCUCUGGGUUCAGU 22 4294 myoC-4549 + GUUCCAGAUUCUCUGGGUUCAGU 23 4295 myoC-4550 + AGUUCCAGAUUCUCUGGGUUCAGU 24 4296 myoC-4551 + UUCUGCUGUUCUCAGCGU 18 4297 myoC-4552 + U UUCUGCUGUUCUCAGCGU 19 4298 myoC-4553 + GUUUCUGCUGU UCUCAGCGU 20 4299 myoC-4554 + UGUUUCUGCUGU UCUCAGCGU 21 4300 myoC-4555 + UUGUUUCUGCUGUUCUCAGCGU 22 4301 myoC-4556 + AU UGU UUCUGCUGUUCUCAGCGU 23 4302 myoC-4557 + AAUUGUU UCUGCUGUUCUCAGCGU 24 4303 myoC-4558 + CCGAGCAGUGUCUCGGGU 18 4304 myoC-4559 + CCCGAGCAGUGUCUCGGGU 19 4305 myoC-1699 + GCCCGAGCAGUGUCUCGGGU 20 1951 myoC-4560 + AGCCCGAGCAGUGUCUCGGGU 21 4306 myoC-4561 + C AG CCCG AG C AG U G U C U CG G G U 22 4307 myoC-4562 + ACAGCCCGAGCAGUGUCUCGGGU 23 4308 myoC-4563 + CACAGCCCGAGCAGUGUCUCGGGU 24 4309 myoC-4564 + AGGAAGAGAACGUUGGGU 18 4310 myoC-4565 + AAGGAAGAGAACGUUGGGU 19 4311 myoC-4566 + CAAGGAAGAGAACGUUGGGU 20 4312 myoC-4567 + UCAAGGAAGAGAACGU UGGGU 21 4313 myoC-4568 + UUCAAGGAAGAGAACGUUGGGU 22 4314 myoC-4569 + GU UCAAGGAAGAGAACGUUGGGU 23 4315 myoC-4570 + AGU UCAAGGAAGAGAACGUUGGGU 24 4316 myoC-4571 + GGGCUCUCCUUCAAAAUU 18 4317 myoC-4572 + UGGGCUCUCCU UCAAAAUU 19 4318 myoC-327 + AUGGGCUCUCCUUCAAAAU U 20 713 myoC-4573 + GAUGGGCUCUCCUUCAAAAUU 21 4319 myoC-4574 + AGAUGGGCUCUCCUUCAAAAUU 22 4320 myoC-4575 + CAGAUGGGCUCUCCUUCAAAAU U 23 4321 myoC-4576 + CCAGAUGGGCUCUCCUUCAAAAUU 24 4322 myoC-4577 + UCCACAUCCUGGUAAAU U 18 4323 myoC-4578 + CUCCACAUCCUGGUAAAUU 19 4324 myoC-4579 + UCUCCACAUCCUGGUAAAUU 20 4325 myoC-4580 + U UCUCCACAUCCUGGUAAAUU 21 4326 myoC-4581 + GU UCUCCACAUCCUGGUAAAUU 22 4327 myoC-4582 + AG U U CUCCACAUCCU GG UAAAU U 23 4328 myoC-4583 + UAGUUCUCCACAUCCUGGUAAAUU 24 4329 myoC-4584 + GAGCUAUUCUGCUUCCUU 18 4330 myoC-4585 + GGAGCUAUUCUGCUUCCUU 19 4331 myoC-4586 + AGGAGCUAUUCUGCUUCCUU 20 4332 myoC-4587 + GAGGAGCUAUUCUGCU UCCUU 21 4333 myoC-4588 + AGAGGAGCUAU UCUGCU UCCUU 22 4334 myoC-4589 + CAGAGGAGCUAUUCUGCUUCCUU 23 4335 myoC-4590 + CCAGAGGAGCUAU UCUGCUUCCUU 24 4336 myoC-4591 + UCAUAUCUUAUGACAGUU 18 4337 myoC-4592 + CUCAUAUCU UAUGACAGUU 19 4338 myoC-2922 + GCUCAUAUCUUAUGACAGUU 20 1821 myoC-4593 + AGCUCAUAUCU UAUGACAGUU 21 4339 myoC-4594 + CAGCUCAUAUCUUAUGACAGUU 22 4340 myoC-4595 + UCAGCUCAUAUCUUAUGACAGUU 23 4341 myoC-4596 + UUCAGCUCAUAUCUUAUGACAGUU 24 4342 myoC-4597 + GAUUCUCUGGGUUCAGUU 18 4343 myoC-4598 + AGAU UCUCUGGGUUCAGU U 19 4344 myoC-446 + CAGAUUCUCUGGGUUCAGUU 20 797 myoC-4599 + CCAGAUUCUCUGGGUUCAGUU 21 4345 myoC-4600 + UCCAGAU UCUCUGGGU UCAGUU 22 4346 myoC-4601 + UUCCAGAU UCUCUGGGUUCAGUU 23 4347 myoC-4602 + GUUCCAGAUUCUCUGGGUUCAGUU 24 4348 myoC-4603 + UGCAAGAGCAAUGGUU UU 18 4349 myoC-4604 + AUGCAAGAGCAAUGGUU UU 19 4350 myoC-4605 + CAUGCAAGAGCAAUGGU UUU 20 4351 myoC-4606 + ACAUGCAAGAGCAAUGGUUU U 21 4352 myoC-4607 + AACAUGCAAGAGCAAUGGUUUU 22 4353 myoC-4608 + UAACAUGCAAGAGCAAUGGUUUU 23 4354 myoC-4609 + GUAACAUGCAAGAGCAAUGGU UUU 24 4355 myoC-4610 - GCCAUUGUCCUCUCCAAA 18 4356 myoC-4611 - UGCCAU UGUCCUCUCCAAA 19 4357 myoC-4612 - GUGCCAUUGUCCUCUCCAAA 20 4358 myoC-4613 - GGUGCCAUUGUCCUCUCCAAA 21 4359 myoC-4614 - AGGUGCCAUUGUCCUCUCCAAA 22 4360 myoC-4615 - AAGGUGCCAU UGUCCUCUCCAAA 23 4361 myoC-4616 - AAAGGUGCCAUUGUCCUCUCCAAA 24 4362 myoC-4617 - ACUUUGGCCUUCCAGGAA 18 4363 myoC-4618 - CACU U UGGCCU UCCAGG AA 19 4364 myoC-4619 - ACACU UUGGCCUUCCAGGAA 20 4365 myoC-4620 - GACACUUUGGCCUUCCAGGAA 21 4366 myoC-4621 - GGACACUUUGGCCUUCCAGGAA 22 4367 myoC-4622 - UGGACACUUUGGCCUUCCAGGAA 23 4368 myoC-4623 - UUGGACACUUUGGCCUUCCAGGAA 24 4369 myoC-4624 - UGGGGGGAGCAGGCUGAA 18 4370 myoC-4625 - CUGGGGGGAGCAGGCUGAA 19 4371 myoC-417 - CCUGGGGGGAGCAGGCUGAA 20 781 myoC-4626 - UCCUGGGGGGAGCAGGCUGAA 21 4372 myoC-4627 - CUCCUGGGGGGAGCAGGCUGAA 22 4373 myoC-4628 - GCUCCUGGGGGGAGCAGGCUGAA 23 4374 myoC-4629 - GGCUCCUGGGGGGAGCAGGCUGAA 24 4375 myoC-4630 - AACUGAAGUCCGAGCUAA 18 4376 myoC-4631 - GAACUGAAGUCCGAGCUAA 19 4377 myoC-4632 - GG AACUGAAGUCCGAGCUAA 20 4378 myoC-4633 - AGG AACUGAAGUCCGAGCUAA 21 4379 myoC-4634 - CAGG AACUGAAGUCCGAGCUAA 22 4380 myoC-4635 - CCAGG AACUGAAGUCCGAGCUAA 23 4381 myoC-4636 - UCCAGGAACUGAAGUCCGAGCUAA 24 4382 myoC-4637 - A A A A AG CAUAACUUCUAA 18 4383 myoC-4638 - U A A A AAG C A U A AC U U C U A A 19 4384 myoC-495 - A U A A A A AG CAUAACUUCUAA 20 837 myoC-4639 - A A U A A A A AG CAUAACUUCUAA 21 4385 myoC-4640 - C A A U A A A A AG CAUAACU UCUAA 22 4386 myoC-4641 - AC A A U A A A A AG CAUAACUUCUAA 23 4387 myoC-4642 - CACA A U A A A A AG CAUAACUUCUAA 24 4388 myoC-4643 - GAGCUGAAUACCGAGACA 18 4389 myoC-4644 - UGAGCUGAAUACCGAGACA 19 4390 myoC-2907 - AUGAGCUGAAUACCGAGACA 20 1809 myoC-4645 - UAUGAGCUGAAUACCGAGACA 21 4391 myoC-4646 - AU AUGAGCUGAAUACCGAGACA 22 4392 myoC-4647 - GAUAUGAGCUGAAUACCGAGACA 23 4393 myoC-4648 - AGAUAUGAGCUGAAUACCGAGACA 24 4394 myoC-4649 - CACAUACUGCCUAGGCCA 18 4395 myoC-4650 - UCACAUACUGCCUAGGCCA 19 4396 myoC-4651 - UUCACAUACUGCCUAGGCCA 20 4397 myoC-4652 - GUUCACAUACUGCCUAGGCCA 21 4398 myoC-4653 - GGU UCACAUACUGCCUAGGCCA 22 4399 myoC-4654 - AGGUUCACAUACUGCCUAGGCCA 23 4400 myoC-4655 - AAGGUUCACAUACUGCCUAGGCCA 24 4401 myoC-4656 - CUGUGCCACCAGGCUCCA 18 4402 myoC-4657 - G CU G U G CCACC AG G CU CCA 19 4403 myoC-1662 - GGCUGUGCCACCAGGCUCCA 20 1924 myoC-4658 - GGGCUGUGCCACCAGGCUCCA 21 4404 myoC-4659 - CGGGCUGUGCCACCAGGCUCCA 22 4405 myoC-4660 - UCGGGCUGUGCCACCAGGCUCCA 23 4406 myoC-4661 - CUCGGGCUGUGCCACCAGGCUCCA 24 4407 myoC-4662 - UGUACAGGCAAUGGCAGA 18 4408 myoC-4663 - CUGUACAGGCAAUGGCAGA 19 4409 myoC-407 - GCUGUACAGGCAAUGGCAGA 20 771 myoC-4664 - AGCUGUACAGGCAAUGGCAGA 21 4410 myoC-4665 - AAGCUGUACAGGCAAUGGCAGA 22 4411 myoC-4666 - CAAGCUGUACAGGCAAUGGCAGA 23 4412 myoC-4667 - CCA AG CUGUACAGG C A A U G G C AG A 24 4413 myoC-4668 - AGAAGGUAAGAAUGCAGA 18 4414 myoC-4669 - GAGAAGGUAAGAAUGCAGA 19 4415 myoC-4670 - AG AGAAGGUAAGAAUGCAGA 20 4416 myoC-4671 - CAG AGAAGGUAAGAAUGCAGA 21 4417 myoC-4672 - CCAGAGAAGGUAAGAAUGCAGA 22 4418 myoC-4673 - UCCAGAGAAGGUAAGAAUGCAGA 23 4419 myoC-4674 - CUCCAGAGAAGGUAAGAAUGCAGA 24 4420 myoC-4675 - CUAUCUCAGGAGUGGAGA 18 4421 myoC-4676 - GCUAUCUCAGGAGUGGAGA 19 4422 myoC-322 - GGCUAUCUCAGGAGUGGAGA 20 708 myoC-4677 - UGGCUAUCUCAGGAGUGGAGA 21 4423 myoC-4678 - CUGGCUAUCUCAGGAGUGGAGA 22 4424 myoC-4679 - UCUGGCUAUCUCAGGAGUGGAGA 23 4425 myoC-4680 - AUCUGGCUAUCUCAGGAGUGGAGA 24 4426 myoC-4681 - GAGGUAGCAAGGCUGAGA 18 4427 myoC-4682 - GGAGGUAGCAAGGCUGAGA 19 4428 myoC-198 - AGGAGGUAGCAAGGCUGAGA 20 584 myoC-4683 - CAGGAGGUAGCAAGGCUGAGA 21 4429 myoC-4684 - CCAGGAGGUAGCAAGGCUGAGA 22 4430 myoC-4685 - GCCAGGAGGUAGCAAGGCUGAGA 23 4431 myoC-4686 - AGCCAGGAGGUAGCAAGGCUGAGA 24 4432 myoC-4687 - AGACAGUGAAGGCUGAGA 18 4433 myoC-4688 - GAGACAGUGAAGGCUGAGA 19 4434 myoC-2 - CGAGACAGUGAAGGCUGAGA 20 405 myoC-4689 - CCG AGACAGUGAAGGCUGAGA 21 4435 myoC-4690 - ACCGAGACAGUGAAGGCUGAGA 22 4436 myoC-4691 - UACCG AGACAGUGAAGGCUGAGA 23 4437 myoC-4692 - AU ACCGAGACAGUGAAGGCUGAGA 24 4438 myoC-4693 - CAUCUGGCUAUCUCAGGA 18 4439 myoC-4694 - CCAUCUGGCUAUCUCAGGA 19 4440 myoC-4695 - CCCAUCUGGCUAUCUCAGGA 20 4441 myoC-4696 - GCCCAUCUGGCUAUCUCAGGA 21 4442 myoC-4697 - AGCCCAUCUGGCUAUCUCAGGA 22 4443 myoC-4698 - GAGCCCAUCUGGCUAUCUCAGGA 23 4444 myoC-4699 - AGAGCCCAUCUGGCUAUCUCAGGA 24 4445 myoC-4700 - GGCUAUCUCAGGAGUGGA 18 4446 myoC-4701 - UGGCUAUCUCAGGAGUGGA 19 4447 myoC-4702 - CUGGCUAUCUCAGGAGUGGA 20 4448 myoC-4703 - UCUGGCUAUCUCAGGAGUGGA 21 4449 myoC-4704 - AUCUGGCUAUCUCAGGAGUGGA 22 4450 myoC-4705 - CAUCUGGCUAUCUCAGGAGUGGA 23 4451 myoC-4706 - CCAUCUGGCUAUCUCAGGAGUGGA 24 4452 myoC-4707 - CUGGGGGGAGCAGGCUGA 18 4453 myoC-4708 - CCUGGGGGGAGCAGGCUGA 19 4454 myoC-416 - UCCUGGGGGGAGCAGGCUGA 20 780 myoC-4709 - CUCCUGGGGGGAGCAGGCUGA 21 4455 myoC-4710 - GCUCCUGGGGGGAGCAGGCUGA 22 4456 myoC-4711 - GGCUCCUGGGGGGAGCAGGCUGA 23 4457 myoC-4712 - GGGCUCCUGGGGGGAGCAGGCUGA 24 4458 myoC-4713 - CUGCU UCCCGAAU UUUGA 18 4459 myoC-4714 - CCUGCUUCCCGAAUUUUGA 19 4460 myoC-317 - UCCUGCU UCCCGAAUUU UGA 20 703 myoC-4715 - UUCCUGCUUCCCGAAUU UUGA 21 4461 myoC-4716 - GUUCCUGCUUCCCGAAU UUUGA 22 4462 myoC-4717 - AGUUCCUGCUUCCCGAAUUUUGA 23 4463 myoC-4718 - AAGUUCCUGCUUCCCGAAUUU UGA 24 4464 myoC-4719 - UAAGAUAUGAGCUGAAUA 18 4465 myoC-4720 - AUAAGAUAUGAGCUGAAUA 19 4466 myoC-2906 - CAUAAGAUAUGAGCUGAAUA 20 1808 myoC-4721 - UCAUAAGAUAUGAGCUGAAUA 21 4467 myoC-4722 - GUCAUAAGAUAUGAGCUGAAUA 22 4468 myoC-4723 - UG UCAUAAGAUAUGAGCUGAAUA 23 4469 myoC-4724 - CUGUCAUAAGAUAUGAGCUGAAUA 24 4470 myoC-4725 - U A A A A AG CAUAACUUCUA 18 4471 myoC-4726 - AUAAAAAGCAUAACUUCUA 19 4472 myoC-4727 - A A U A A A A AG CAUAACUUCUA 20 4473 myoC-4728 - CAAU AAAAAGCAU AACU UCU A 21 4474 myoC-4729 - ACAAUAAAAAGCAUAACUUCUA 22 4475 myoC-4730 - CACAAU AAAAAGCAU AACU UCU A 23 4476 myoC-4731 - CCACAAU AAAAAGCAU AACU UCU A 24 4477 myoC-4732 - UCUGGAACUCGAACAAAC 18 4478 myoC-4733 - AUCUGGAACUCGAACAAAC 19 4479 myoC-4734 - AAUCUGGAACUCGAACAAAC 20 4480 myoC-4735 - GAAUCUGGAACUCGAACAAAC 21 4481 myoC-4736 - AGAAUCUGGAACUCGAACAAAC 22 4482 myoC-4737 - GAGAAUCUGGAACUCGAACAAAC 23 4483 myoC-4738 - AGAGAAUCUGGAACUCGAACAAAC 24 4484 myoC-4739 - CUCUUUGCCUGGGACAAC 18 4485 myoC-4740 - GCUCU UUGCCUGGGACAAC 19 4486 myoC-2963 - AGCUCU UUGCCUGGGACAAC 20 1851 myoC-4741 - AAGCUCUUUGCCUGGGACAAC 21 4487 myoC-4742 - GAAGCUCUUUGCCUGGGACAAC 22 4488 myoC-4743 - AGAAGCUCUUUGCCUGGGACAAC 23 4489 myoC-4744 - AAGAAGCUCU UUGCCUGGGACAAC 24 4490 myoC-4745 - ACCCAGAGAAUCUGGAAC 18 4491 myoC-4746 - AACCCAGAGAAUCUGGAAC 19 4492 myoC-4747 - GAACCCAGAGAAUCUGGAAC 20 4493 myoC-4748 - UGAACCCAGAGAAUCUGGAAC 21 4494 myoC-4749 - CUG AACCCAGAGAAUCUGGAAC 22 4495 myoC-4750 - ACUGAACCCAGAGAAUCUGGAAC 23 4496 myoC-4751 - AACUGAACCCAGAGAAUCUGGAAC 24 4497 myoC-4752 - CUACACCCAGGAGACCAC 18 4498 myoC-4753 - CCUACACCCAGGAGACCAC 19 4499 myoC-4754 - CCCUACACCCAGGAGACCAC 20 4500 myoC-4755 - CCCCUACACCCAGGAGACCAC 21 4501 myoC-4756 - ACCCCUACACCCAGGAGACCAC 22 4502 myoC-4757 - U ACCCCU ACACCCAG G AG ACCAC 23 4503 myoC-4758 - CUACCCCUACACCCAGGAGACCAC 24 4504 myoC-4759 - ACAUACUGCCUAGGCCAC 18 4505 myoC-4760 - CACAUACUGCCUAGGCCAC 19 4506 myoC-369 - UCACAUACUGCCUAGGCCAC 20 755 myoC-4761 - UUCACAUACUGCCUAGGCCAC 21 4507 myoC-4762 - GUUCACAUACUGCCUAGGCCAC 22 4508 myoC-4763 - GGUUCACAUACUGCCUAGGCCAC 23 4509 myoC-4764 - AGGUUCACAUACUGCCUAGGCCAC 24 4510 myoC-4765 - GGGCCAGUGUCCCCAGAC 18 4511 myoC-4766 - GGGGCCAGUGUCCCCAGAC 19 4512 myoC-1659 - AG G G G CCAG U G U CCCCAG AC 20 1921 myoC-4767 - AAGGGGCCAGUGUCCCCAGAC 21 4513 myoC-4768 - G A AG G G G CC AG U G U CCCC AG AC 22 4514 myoC-4769 - AG AAGGGGCCAGUGUCCCCAGAC 23 4515 myoC-4770 - GAGAAGGGGCCAGUGUCCCCAGAC 24 4516 myoC-4771 - UAUUCUUGGGGUGGCUAC 18 4517 myoC-4772 - GUAUUCUUGGGGUGGCUAC 19 4518 myoC-2917 - CGUAUUCUUGGGGUGGCUAC 20 1816 myoC-4773 - CCGUAUUCUUGGGGUGGCUAC 21 4519 myoC-4774 - CCCGUAU UCUUGGGG UGGCUAC 22 4520 myoC-4775 - UCCCGUAUUCUUGGGGUGGCUAC 23 4521 myoC-4776 - UUCCCGUAUUCUUGGGGUGGCUAC 24 4522 myoC-4777 - UUU UAAUGCAGUUUCUAC 18 4523 myoC-4778 - CU UUUAAUGCAGUUUCUAC 19 4524 myoC-4779 - UCU UUUAAUGCAGUUUCUAC 20 4525 myoC-4780 - UUCU UUUAAUGCAGUU UCUAC 21 4526 myoC-4781 - UUUCUUUUAAUGCAGU UUCUAC 22 4527 myoC-4782 - CU UUCUU UUAAUGCAGUUUCUAC 23 4528 myoC-4783 - UCUUUCU UUUAAUGCAGUUUCUAC 24 4529 myoC-4784 - ACGGGUGCUGUGGUGUAC 18 4530 myoC-4785 - CACGGGUGCUGUGGUGUAC 19 4531 myoC-4786 - GCACGGGUGCUGUGGUGUAC 20 4532 myoC-4787 - AGCACGGGUGCUGUGGUGUAC 21 4533 myoC-4788 - AAGCACGGGUGCUG UGGUGUAC 22 4534 myoC-4789 - AAAGCACGGGUGCUGUGGUGUAC 23 4535 myoC-4790 - GAAAGCACGGGUGCUGUGGUGUAC 24 4536 myoC-4791 - CUGGAACUCGAACAAACC 18 4537 myoC-4792 - UCUGGAACUCGAACAAACC 19 4538 myoC-396 - AUCUGGAACUCGAACAAACC 20 766 myoC-4793 - AAUCUGGAACUCGAACAAACC 21 4539 myoC-4794 - GAAUCUGGAACUCGAACAAACC 22 4540 myoC-4795 - AG AAUCUGGAACUCGAACAAACC 23 4541 myoC-4796 - GAG AAUCUGGAACUCGAACAAACC 24 4542 myoC-4797 - UCCUCUCCAAACUGAACC 18 4543 myoC-4798 - GUCCUCUCCAAACUGAACC 19 4544 myoC-4799 - UGUCCUCUCCAAACUGAACC 20 4545 myoC-4800 - UUGUCCUCUCCAAACUGAACC 21 4546 myoC-4801 - AU UGUCCUCUCCAAACUGAACC 22 4547 myoC-4802 - CAU UGUCCUCUCCAAACUGAACC 23 4548 myoC-4803 - CCAU UGUCCUCUCCAAACUGAACC 24 4549 myoC-4804 - CCCACCUACCCCUACACC 18 4550 myoC-4805 - GCCCACCUACCCCUACACC 19 4551 myoC-4806 - AGCCCACCUACCCCUACACC 20 4552 myoC-4807 - AAGCCCACCU ACCCCU ACACC 21 4553 myoC-4808 - C A AG CCCACCUACCCCUACACC 22 4554 myoC-4809 - CCAAGCCCACCUACCCCUACACC 23 4555 myoC-4810 - CCCAAGCCCACCUACCCCUACACC 24 4556 myoC-4811 - UCCCUGGAGCUGGCUACC 18 4557 myoC-4812 - AUCCCUGGAGCUGGCUACC 19 4558 myoC-2914 - AAUCCCUGGAGCUGGCUACC 20 1814 myoC-4813 - AAAUCCCUGGAGCUGGCUACC 21 4559 myoC-4814 - GAAAUCCCUGGAGCUGGCUACC 22 4560 myoC-4815 - GGAAAUCCCUGGAGCUGGCUACC 23 4561 myoC-4816 - AGGAAAUCCCUGGAGCUGGCUACC 24 4562 myoC-4817 - CCACCUACCCCUACACCC 18 4563 myoC-4818 - CCCACCUACCCCUACACCC 19 4564 myoC-360 - GCCCACCUACCCCUACACCC 20 746 myoC-4819 - AGCCCACCUACCCCUACACCC 21 4565 myoC-4820 - A AG CCC ACC U ACCCC U AC ACCC 22 4566 myoC-4821 - CAAGCCCACCUACCCCUACACCC 23 4567 myoC-4822 - CCA AG CCCACCUACCCCUACACCC 24 4568 myoC-4823 - AUGAUUGACUACAACCCC 18 4569 myoC-4824 - CAUG AU UG ACU ACAACCCC 19 4570 myoC-2957 - GCAUGAUUGACUACAACCCC 20 1847 myoC-4825 - AGCAUGAUUGACUACAACCCC 21 4571 myoC-4826 - CAGCAUGAUUGACUACAACCCC 22 4572 myoC-4827 - GCAGCAUGAUUGACUACAACCCC 23 4573 myoC-4828 - AGCAGCAUGAUUGACUACAACCCC 24 4574 myoC-4829 - UGAUUGACUACAACCCCC 18 4575 myoC-4830 - AUGAUUGACUACAACCCCC 19 4576 myoC-55 - CAUG AU UG ACU ACAACCCCC 20 454 myoC-4831 - GCAUGAUUGACUACAACCCCC 21 4577 myoC-4832 - AGCAUG AU UG ACU ACAACCCCC 22 4578 myoC-4833 - CAGCAUGAUUGACUACAACCCCC 23 4579 myoC-4834 - GCAGCAUGAUUGACUACAACCCCC 24 4580 myoC-4835 - GGCUGAGAAGGAAAUCCC 18 4581 myoC-4836 - AGGCUGAGAAGGAAAUCCC 19 4582 myoC-3 - AAGGCUGAGAAGGAAAUCCC 20 406 myoC-4837 - GAAGGCUGAGAAGGAAAUCCC 21 4583 myoC-4838 - UG AAGGCUGAGAAGGAAAUCCC 22 4584 myoC-4839 - GUG AAGGCUGAGAAGGAAAUCCC 23 4585 myoC-4840 - AG UG AAGGCUG AG AAGGAAAUCCC 24 4586 myoC-3549 - GGUUGGAAAGCAGCAGCC 18 3295 myoC-3550 - AGGUUGGAAAGCAGCAGCC 19 3296 myoC-107 - GAGGUUGGAAAGCAGCAGCC 20 511 myoC-4841 - GAGAAGAAGCUCUUUGCC 18 4587 myoC-4842 - GGAGAAGAAGCUCUUUGCC 19 4588 myoC-56 - UGGAGAAGAAGCUCUU UGCC 20 455 myoC-4843 - CUGGAGAAGAAGCUCU UUGCC 21 4589 myoC-4844 - CCUGGAGAAGAAGCUCU UUGCC 22 4590 myoC-4845 - CCCUGGAGAAGAAGCUCUU UGCC 23 4591 myoC-4846 - CCCCUGGAGAAGAAGCUCUUUGCC 24 4592 myoC-4847 - AGGCUGAGAAGGAAAUCC 18 4593 myoC-4848 - AAGGCUG AG AAGGAAAUCC 19 4594 myoC-2912 - GAAGGCUGAGAAGGAAAUCC 20 1813 myoC-4849 - UG AAGGCUG AG AAGGAAAUCC 21 4595 myoC-4850 - GUG AAGGCUG AG AAGGAAAUCC 22 4596 myoC-4851 - AGUG AAGGCUG AG AAGGAAAUCC 23 4597 myoC-4852 - CAGUGAAGGCUGAGAAGGAAAUCC 24 4598 myoC-4853 - GGAGAUGCUCAGGGCUCC 18 4599 myoC-4854 - AGGAGAUGCUCAGGGCUCC 19 4600 myoC-410 - AAGGAGAUGCUCAGGGCUCC 20 774 myoC-4855 - GAAGGAGAUGCUCAGGGCUCC 21 4601 myoC-4856 - AG AAGGAGAUGCUCAGGGCUCC 22 4602 myoC-4857 - CAG AAGGAGAUGCUCAGGGCUCC 23 4603 myoC-4858 - GCAGAAGGAGAUGCUCAGGGCUCC 24 4604 myoC-4859 - UGGACACUU UGGCCU UCC 18 4605 myoC-4860 - UUGGACACUU UGGCCU UCC 19 4606 myoC-316 - UUUGGACACU UUGGCCUUCC 20 702 myoC-4861 - AUU UGGACACUUUGGCCUUCC 21 4607 myoC-4862 - AAUUUGGACACUUUGGCCUUCC 22 4608 myoC-4863 - GAAUUUGGACACUUUGGCCUUCC 23 4609 myoC-4864 - GGAAUUUGGACACU UUGGCCU UCC 24 4610 myoC-4865 - UACCCAACGUUCUCUUCC 18 4611 myoC-4866 - U UACCCAACGUUCUCUUCC 19 4612 myoC-4867 - CUUACCCAACGUUCUCUUCC 20 4613 myoC-4868 - UCUUACCCAACGUUCUCUUCC 21 4614 myoC-4869 - UUCUUACCCAACGUUCUCUUCC 22 4615 myoC-4870 - U UUCUUACCCAACGUUCUCUUCC 23 4616 myoC-4871 - UUUUCU UACCCAACGUUCUCUUCC 24 4617 myoC-4872 - AAGGGAGAGCCAGCCAGC 18 4618 myoC-4873 - GAAGGGAGAGCCAGCCAGC 19 4619 myoC-3018 - UG AAGGGAGAGCCAGCCAGC 20 2802 myoC-4874 - CUGAAGGGAGAGCCAGCCAGC 21 4620 myoC-4875 - GCUG AAGGGAGAGCCAGCCAGC 22 4621 myoC-4876 - GGCUG AAGGGAGAGCCAGCCAGC 23 4622 myoC-4877 - AGGCUGAAGGGAGAGCCAGCCAGC 24 4623 myoC-3579 - AGGUUGGAAAGCAGCAGC 18 3325 myoC-3580 - GAGGUUGGAAAGCAGCAGC 19 3326 myoC-1653 - GGAGGU UGGAAAGCAGCAGC 20 1917 myoC-4878 - CCAGACCCGAGACACUGC 18 4624 myoC-4879 - CCCAGACCCGAGACACUGC 19 4625 myoC-1660 - CCCCAGACCCGAGACACUGC 20 1922 myoC-4880 - UCCCCAGACCCGAGACACUGC 21 4626 myoC-4881 - GUCCCCAGACCCGAGACACUGC 22 4627 myoC-4882 - UG UCCCCAGACCCGAGACACUGC 23 4628 myoC-4883 - GUGUCCCCAGACCCGAGACACUGC 24 4629 myoC-4884 - GGAGAAGAAGCUCUUUGC 18 4630 myoC-4885 - UGGAGAAGAAGCUCU UUGC 19 4631 myoC-2961 - CUGGAGAAGAAGCUCUU UGC 20 1850 myoC-4886 - CCUGGAGAAGAAGCUCUU UGC 21 4632 myoC-4887 - CCCUGGAGAAGAAGCUCUUUGC 22 4633 myoC-4888 - CCCCUGGAGAAGAAGCUCUU UGC 23 4634 myoC-4889 - CCCCCUGGAGAAGAAGCUCUUUGC 24 4635 myoC-4890 - AACUGAACCCAGAGAAUC 18 4636 myoC-4891 - AAACUGAACCCAGAGAAUC 19 4637 myoC-395 - CAAACUGAACCCAGAGAAUC 20 765 myoC-4892 - CCAAACU G AACCCAG AG AAU C 21 4638 myoC-4893 - UCCAAACUGAACCCAGAGAAUC 22 4639 myoC-4894 - CUCCAAACUG AACCCAG AG AAUC 23 4640 myoC-4895 - UCUCCAAACUGAACCCAGAGAAUC 24 4641 myoC-4896 - UCCAAGUUU UCAU UAAUC 18 4642 myoC-4897 - U U CCAAG U U U UCAU U AAU C 19 4643 myoC-3019 - UUUCCAAGUU UUCAUUAAUC 20 2803 myoC-4898 - CU UUCCAAGU UUUCAU UAAUC 21 4644 myoC-4899 - GCUUUCCAAGUUU UCAU UAAUC 22 4645 myoC-4900 - UGCUUUCCAAGUUU UCAU UAAUC 23 4646 myoC-4901 - CUGCU UUCCAAGU UUUCAUUAAUC 24 4647 myoC-4902 - GGGUGCUGUGGUGUACUC 18 4648 myoC-4903 - CGGGUGCUG UGGUGUACUC 19 4649 myoC-374 - ACGGGUGCUGUGGUGUACUC 20 760 myoC-4904 - CACGGGUGCUGUGGUG UACUC 21 4650 myoC-4905 - GCACGGGUGCUGUGGUGUACUC 22 4651 myoC-4906 - AGCACGGGUGCUGUGGUGUACUC 23 4652 myoC-4907 - AAGCACGGGUGCUGUGGUGUACUC 24 4653 myoC-4908 - GGCUGUGCCACCAGGCUC 18 4654 myoC-4909 - GGGCUGUGCCACCAGGCUC 19 4655 myoC-1661 - CGGGCUGUGCCACCAGGCUC 20 1923 myoC-4910 - UCGGGCUGUGCCACCAGGCUC 21 4656 myoC-4911 - CUCGGGCUGUGCCACCAGGCUC 22 4657 myoC-4912 - GCUCGGGCUGUGCCACCAGGCUC 23 4658 myoC-4913 - UGCUCGGGCUGUGCCACCAGGCUC 24 4659 myoC-4914 - AGGAGAUGCUCAGGGCUC 18 4660 myoC-4915 - AAGGAGAUGCUCAGGGCUC 19 4661 myoC-3007 - GAAGGAGAUGCUCAGGGCUC 20 2798 myoC-4916 - AG AAGGAGAUGCUCAGGGCUC 21 4662 myoC-4917 - CAG AAGGAGAUGCUCAGGGCUC 22 4663 myoC-4918 - GCAG AAGGAGAUGCUCAGGGCUC 23 4664 myoC-4919 - GGCAGAAGGAGAUGCUCAGGGCUC 24 4665 myoC-4920 - UU UCCAGGGCGCUGAGUC 18 4666 myoC-4921 - AUUUCCAGGGCGCUGAGUC 19 4667 myoC-4922 - UAUUUCCAGGGCGCUGAGUC 20 4668 myoC-4923 - CUAU UUCCAGGGCGCUGAGUC 21 4669 myoC-4924 - UCUAU UUCCAGGGCGCUGAGUC 22 4670 myoC-4925 - CUCUAUUUCCAGGGCGCUGAGUC 23 4671 myoC-4926 - CCUCUAU UUCCAGGGCGCUGAGUC 24 4672 myoC-4927 - ACCCUGACCAUCCCAUUC 18 4673 myoC-4928 - G ACCCUG ACCAUCCCAU UC 19 4674 myoC-2956 - AGACCCUGACCAUCCCAUUC 20 1846 myoC-4929 - AAGACCCUGACCAUCCCAUUC 21 4675 myoC-4930 - CAAGACCCUGACCAUCCCAU UC 22 4676 myoC-4931 - GCAAG ACCCUGACCAUCCCAUUC 23 4677 myoC-4932 - AGCAAGACCCUGACCAUCCCAUUC 24 4678 myoC-4933 - CGGACAGUUCCCGUAU UC 18 4679 myoC-4934 - ACGGACAGUUCCCGUAU UC 19 4680 myoC-2915 - CACGGACAGUUCCCGUAUUC 20 1815 myoC-4935 - CCACGGACAGU UCCCGUAUUC 21 4681 myoC-4936 - ACCACGGACAGU UCCCGUAUUC 22 4682 myoC-4937 - UACCACGGACAGUUCCCGUAUUC 23 4683 myoC-4938 - CUACCACGGACAGUUCCCGUAU UC 24 4684 myoC-4939 - UUGGACACUUUGGCCU UC 18 4685 myoC-4940 - U UUGGACACUU UGGCCUUC 19 4686 myoC-4941 - AUUUGGACACUUUGGCCU UC 20 4687 myoC-4942 - AAUUUGGACACU UUGGCCUUC 21 4688 myoC-4943 - GAAUUUGGACACUUUGGCCUUC 22 4689 myoC-4944 - GGAAU UUGGACACUUUGGCCUUC 23 4690 myoC-4945 - UGGAAU UUGGACACUU UGGCCUUC 24 4691 myoC-4946 - AGGCAUAAUAGU UUCU UC 18 4692 myoC-4947 - AAGGCAUAAUAGUU UCUUC 19 4693 myoC-4948 - UAAGGCAUAAUAGU UUCUUC 20 4694 myoC-4949 - GUAAGGCAUAAUAGUU UCUUC 21 4695 myoC-4950 - UGUAAGGCAUAAUAGU UUCUUC 22 4696 myoC-4951 - CUGUAAGGCAUAAUAGUU UCUUC 23 4697 myoC-4952 - GCUGUAAGGCAUAAUAGUUUCUUC 24 4698 myoC-4953 - UCGGGGAGCCUCUAUU UC 18 4699 myoC-4954 - CUCGGGGAGCCUCUAU UUC 19 4700 myoC-4955 - ACUCGGGGAGCCUCUAU UUC 20 4701 myoC-4956 - UACUCGGGGAGCCUCUAU UUC 21 4702 myoC-4957 - GUACUCGGGGAGCCUCUAUUUC 22 4703 myoC-4958 - UGUACUCGGGGAGCCUCUAUU UC 23 4704 myoC-4959 - GUGUACUCGGGGAGCCUCUAUUUC 24 4705 myoC-4960 - GCUUCCCGAAUUUUGAAG 18 4706 myoC-4961 - UGCUUCCCGAAUUUUGAAG 19 4707 myoC-4962 - CUGCUUCCCGAAUU UUGAAG 20 4708 myoC-4963 - CCUGCU UCCCGAAUUUUGAAG 21 4709 myoC-4964 - UCCUGCUUCCCGAAUUU UGAAG 22 4710 myoC-4965 - UUCCUGCUUCCCGAAUU UUGAAG 23 4711 myoC-4966 - GUUCCUGCUUCCCGAAU UUUGAAG 24 4712 myoC-4967 - CUCUCACGCUGAGAACAG 18 4713 myoC-4968 - CCUCUCACGCUGAGAACAG 19 4714 myoC-4969 - GCCUCUCACGCUGAGAACAG 20 4715 myoC-4970 - AG CCUCUCACGCUGAGAACAG 21 4716 myoC-4971 - GAGCCUCUCACGCUGAGAACAG 22 4717 myoC-4972 - AGAGCCUCUCACGCUGAGAACAG 23 4718 myoC-4973 - GAGAGCCUCUCACGCUGAGAACAG 24 4719 myoC-4974 - CUGUACAGGCAAUGGCAG 18 4720 myoC-4975 - GCUGUACAGGCAAUGGCAG 19 4721 myoC-3004 - AGCUGUACAGGCAAUGGCAG 20 2796 myoC-4976 - AAGCUGUACAGGCAAUGGCAG 21 4722 myoC-4977 - C A AG C U G U AC AG G C A A U G G C AG 22 4723 myoC-4978 - CCAAGCUGUACAGGCAAUGGCAG 23 4724 myoC-4979 - UCCAAGCUGUACAGGCAAUGGCAG 24 4725 myoC-4980 - GAAGGUAAGAAUGCAGAG 18 4726 myoC-4981 - AGAAGGUAAGAAUGCAGAG 19 4727 myoC-3185 - GAGAAGGUAAGAAUGCAGAG 20 2931 myoC-4982 - AG AGAAGGUAAGAAUGCAGAG 21 4728 myoC-4983 - CAGAGAAGGUAAGAAUGCAGAG 22 4729 myoC-4984 - CCAG AGAAGGUAAGAAUGCAGAG 23 4730 myoC-4985 - UCCAGAGAAGGUAAGAAUGCAGAG 24 4731 myoC-4986 - AUCUGGCUAUCUCAGGAG 18 4732 myoC-4987 - CAUCUGGCUAUCUCAGGAG 19 4733 myoC-320 - CCAUCUGGCUAUCUCAGGAG 20 706 myoC-4988 - CCCAUCUGGCUAUCUCAGGAG 21 4734 myoC-4989 - GCCCAUCUGGCUAUCUCAGGAG 22 4735 myoC-4990 - AGCCCAUCUGGCUAUCUCAGGAG 23 4736 myoC-4991 - GAGCCCAUCUGGCUAUCUCAGGAG 24 4737 myoC-4992 - GACUACAACCCCCUGGAG 18 4738 myoC-4993 - UGACUACAACCCCCUGGAG 19 4739 myoC-2960 - UUGACUACAACCCCCUGGAG 20 1849 myoC-4994 - AU UGACUACAACCCCCUGGAG 21 4740 myoC-4995 - GAU UGACUACAACCCCCUGGAG 22 4741 myoC-4996 - UGAUUGACUACAACCCCCUGGAG 23 4742 myoC-4997 - AUGAUUGACUACAACCCCCUGGAG 24 4743 myoC-4998 - GCUAUCUCAGGAGUGGAG 18 4744 myoC-4999 - GGCUAUCUCAGGAGUGGAG 19 4745 myoC-321 - UGGCUAUCUCAGGAGUGGAG 20 707 myoC-5000 - CUGGCUAUCUCAGGAGUGGAG 21 4746 myoC-5001 - UCUGGCUAUCUCAGGAGUGGAG 22 4747 myoC-5002 - AUCUGGCUAUCUCAGGAGUGGAG 23 4748 myoC-5003 - CAUCUGGCUAUCUCAGGAGUGGAG 24 4749 myoC-5004 - GGAGGUAGCAAGGCUGAG 18 4750 myoC-5005 - AGGAGGUAGCAAGGCUGAG 19 4751 myoC-1657 - CAGGAGGUAGCAAGGCUGAG 20 1920 myoC-5006 - CCAGGAGGUAGCAAGGCUGAG 21 4752 myoC-5007 - GCCAGGAGGUAGCAAGGCUGAG 22 4753 myoC-5008 - AGCCAGGAGGUAGCAAGGCUGAG 23 4754 myoC-5009 - CAGCCAGGAGGUAGCAAGGCUGAG 24 4755 myoC-5010 - GAGACAGUGAAGGCUGAG 18 4756 myoC-5011 - CGAGACAGUGAAGGCUGAG 19 4757 myoC-2910 - CCGAGACAGUGAAGGCUGAG 20 1812 myoC-5012 - ACCGAGACAGUGAAGGCUGAG 21 4758 myoC-5013 - UACCGAGACAGUGAAGGCUGAG 22 4759 myoC-5014 - AU ACCGAGACAGUGAAGGCUGAG 23 4760 myoC-5015 - AAUACCGAGACAGUGAAGGCUGAG 24 4761 myoC-5016 - GAGAACUAGUUUGGGUAG 18 4762 myoC-5017 - GGAGAACUAGUUUGGGUAG 19 4763 myoC-5018 - UGGAGAACUAGUUUGGGUAG 20 4764 myoC-5019 - GUGGAGAACUAGUUUGGGUAG 21 4765 myoC-5020 - UG UGGAGAACUAGUUUGGGUAG 22 4766 myoC-5021 - AUG UGGAGAACUAGUUUGGGUAG 23 4767 myoC-5022 - GAUGUGGAGAACUAGU UUGGGUAG 24 4768 myoC-5023 - UACACCCAGGAGACCACG 18 4769 myoC-5024 - CUACACCCAGGAGACCACG 19 4770 myoC-361 - CCUACACCCAGGAGACCACG 20 747 myoC-5025 - CCCUACACCCAGGAGACCACG 21 4771 myoC-5026 - CCCCUACACCCAGGAGACCACG 22 4772 myoC-5027 - ACCCCUACACCCAGGAGACCACG 23 4773 myoC-5028 - UACCCCUACACCCAGGAGACCACG 24 4774 myoC-5029 - GUAGGAGAGCCUCUCACG 18 4775 myoC-5030 - GGUAGGAGAGCCUCUCACG 19 4776 myoC-5031 - GGGUAGGAGAGCCUCUCACG 20 4777 myoC-5032 - UGGGUAGGAGAGCCUCUCACG 21 4778 myoC-5033 - U UGGGUAGGAGAGCCUCUCACG 22 4779 myoC-5034 - U U UGGGUAGGAGAGCCUCUCACG 23 4780 myoC-5035 - GU UUGGGUAGGAGAGCCUCUCACG 24 4781 myoC-5036 - GGGUCAUUUACAGCACCG 18 4782 myoC-5037 - UGGGUCAUUUACAGCACCG 19 4783 myoC-2921 - CUGGG UCAU U U ACAGCACCG 20 1820 myoC-5038 - UCUGGGUCAU UUACAGCACCG 21 4784 myoC-5039 - CUCUGGGUCAUUUACAGCACCG 22 4785 myoC-5040 - CCUCUGGGUCAU UUACAGCACCG 23 4786 myoC-5041 - GCCUCUGGGUCAUU UACAGCACCG 24 4787 myoC-5042 - GGUGCUGUGGUGUACUCG 18 4788 myoC-5043 - GGGUGCUGUGGUGUACUCG 19 4789 myoC-375 - CGGGUGCUGUGGUGUACUCG 20 761 myoC-5044 - ACGGG UGCUGUGGUGUACUCG 21 4790 myoC-5045 - CACGGGUGCUGUGGUG UACUCG 22 4791 myoC-5046 - GCACGGGUGCUGUGGUGUACUCG 23 4792 myoC-5047 - AGCACGGGUGCUGUGGUGUACUCG 24 4793 myoC-5048 - AGCCAGGAGGUAGCAAGG 18 4794 myoC-5049 - CAGCCAGGAGGUAGCAAGG 19 4795 myoC-1655 - GCAGCCAGGAGGUAGCAAGG 20 1918 myoC-5050 - AGCAGCCAGGAGGUAGCAAGG 21 4796 myoC-5051 - C AG C AG CC AG G AG G U AG C A AG G 22 4797 myoC-5052 - GCAGCAGCCAGGAGGUAGCAAGG 23 4798 myoC-5053 - AGCAGCAGCCAGGAGGUAGCAAGG 24 4799 myoC-5054 - U UUCAUUAAUCCAGAAGG 18 4800 myoC-5055 - UU UUCAUUAAUCCAGAAGG 19 4801 myoC-3021 - GU UUUCAUUAAUCCAGAAGG 20 2805 myoC-5056 - AGUUU UCAU UAAUCCAGAAGG 21 4802 myoC-5057 - AAGU U UUCAUUAAUCCAGAAGG 22 4803 myoC-5058 - C A AG U UUUCAUUAAUCCAGAAGG 23 4804 myoC-5059 - CCAAGUUU UCAU UAAUCCAGAAGG 24 4805 myoC-5060 - GGGGGAGCAGGCUGAAGG 18 4806 myoC-5061 - GGGGGGAGCAGGCUGAAGG 19 4807 myoC-3017 - UGGGGGGAGCAGGCUGAAGG 20 2801 myoC-5062 - CUGGGGGGAGCAGGCUGAAGG 21 4808 myoC-5063 - CCUGGGGGGAGCAGGCUGAAGG 22 4809 myoC-5064 - UCCUGGGGGGAGCAGGCUGAAGG 23 4810 myoC-5065 - CUCCUGGGGGGAGCAGGCUGAAGG 24 4811 myoC-5066 - AUACCGAGACAGUGAAGG 18 4812 myoC-5067 - AAUACCGAGACAGUGAAGG 19 4813 myoC-2908 - GAAUACCGAGACAGUGAAGG 20 1810 myoC-5068 - UG AAUACCGAGACAGUGAAGG 21 4814 myoC-5069 - CUG AAUACCGAGACAGUGAAGG 22 4815 myoC-5070 - GCUG AAUACCGAGACAGUGAAGG 23 4816 myoC-5071 - AGCUGAAUACCGAGACAGUGAAGG 24 4817 myoC-5072 - GCUCCUGGGGGGAGCAGG 18 4818 myoC-5073 - GGCUCCUGGGGGGAGCAGG 19 4819 myoC-3013 - GGGCUCCUGGGGGGAGCAGG 20 2799 myoC-5074 - AGGGCUCCUGGGGGGAGCAGG 21 4820 myoC-5075 - CAGGGCUCCUGGGGGGAGCAGG 22 4821 myoC-5076 - UCAGGGCUCCUGGGGGGAGCAGG 23 4822 myoC-5077 - CUCAGGGCUCCUGGGGGGAGCAGG 24 4823 myoC-5078 - AUGCUCAGGGCUCCUGGG 18 4824 myoC-5079 - GAUGCUCAGGGCUCCUGGG 19 4825 myoC-414 - AG AUGCUCAGGGCUCCUGGG 20 778 myoC-5080 - GAGAUGCUCAGGGCUCCUGGG 21 4826 myoC-5081 - GGAGAUGCUCAGGGCUCCUGGG 22 4827 myoC-5082 - AGGAGAUGCUCAGGGCUCCUGGG 23 4828 myoC-5083 - AAGGAGAUGCUCAGGGCUCCUGGG 24 4829 myoC-5084 - GUGGAGAACUAGUUUGGG 18 4830 myoC-5085 - UGUGGAGAACUAGUUUGGG 19 4831 myoC-5086 - AUGUGGAGAACUAGUU UGGG 20 4832 myoC-5087 - GAUGUGGAGAACUAGU UUGGG 21 4833 myoC-5088 - GGAUGUGGAGAACUAGUUUGGG 22 4834 myoC-5089 - AGG AUGUGGAGAACUAGUUUGGG 23 4835 myoC-5090 - CAGGAUGUGGAGAACUAGUUUGGG 24 4836 myoC-5091 - AAGCUGUACAGGCAAUGG 18 4837 myoC-5092 - CAAGCUGUACAGGCAAUGG 19 4838 myoC-3003 - CCAAGCUGUACAGGCAAUGG 20 2795 myoC-5093 - UCCAAGCUGUACAGGCAAUGG 21 4839 myoC-5094 - CUCCAAGCUGUACAGGCAAUGG 22 4840 myoC-5095 - CCUCCAAGCUGUACAGG C A A U G G 23 4841 myoC-5096 - GCCUCCAAGCUGUACAGGCAAUGG 24 4842 myoC-5097 - GAUGCUCAGGGCUCCUGG 18 4843 myoC-5098 - AGAUGCUCAGGGCUCCUGG 19 4844 myoC-413 - GAGAUGCUCAGGGCUCCUGG 20 777 myoC-5099 - GGAGAUGCUCAGGGCUCCUGG 21 4845 myoC-5100 - AGGAGAUGCUCAGGGCUCCUGG 22 4846 myoC-5101 - AAGG AGAUGCUCAGGGCUCCUGG 23 4847 myoC-5102 - GAAGG AGAUGCUCAGGGCUCCUGG 24 4848 myoC-5103 - GGUAAGAAUGCAGAGUGG 18 4849 myoC-5104 - AGGUAAGAAUGCAGAGUGG 19 4850 myoC-3188 - AAGGUAAGAAUGCAGAGUGG 20 2934 myoC-5105 - GAAGG U AAGAAUGCAG AG UGG 21 4851 myoC-5106 - AGAAGGUAAGAAUGCAGAGUGG 22 4852 myoC-5107 - GAGAAGGUAAGAAUGCAGAGUGG 23 4853 myoC-5108 - AGAGAAGGUAAGAAUGCAGAGUGG 24 4854 myoC-5109 - ACAUUGACU UGGCUGUGG 18 4855 myoC-5110 - GACAUUGACU UGGCUGUGG 19 4856 myoC-2919 - GGACAU UGACUUGGCUGUGG 20 1818 myoC-5111 - CGGACAUUGACUUGGCUGUGG 21 4857 myoC-5112 - ACGGACAUUGACUUGGCUGUGG 22 4858 myoC-5113 - CACGGACAUUGACUUGGCUGUGG 23 4859 myoC-5114 - ACACGGACAUUGACU UGGCUGUGG 24 4860 myoC-5115 - UCUGAAUUUACCAGGAUG 18 4861 myoC-5116 - U UCUGAAUUUACCAGGAUG 19 4862 myoC-353 - UU UCUGAAUUUACCAGGAUG 20 739 myoC-5117 - UU UUCUGAAUUUACCAGGAUG 21 4863 myoC-5118 - CU UUUCUGAAU UUACCAGGAUG 22 4864 myoC-5119 - UCU UUUCUGAAUUUACCAGGAUG 23 4865 myoC-5120 - U UCUUU UCUGAAUUUACCAGGAUG 24 4866 myoC-5121 - CUCAUCAGCCAGUUUAUG 18 4867 myoC-5122 - CCUCAUCAGCCAGUUUAUG 19 4868 myoC-5123 - ACCUCAUCAGCCAGU UUAUG 20 4869 myoC-5124 - GACCUCAUCAGCCAGU UUAUG 21 4870 myoC-5125 - UGACCUCAUCAGCCAGUUUAUG 22 4871 myoC-5126 - AUGACCUCAUCAGCCAGUUUAUG 23 4872 myoC-5127 - UAUGACCUCAUCAGCCAGUU UAUG 24 4873 myoC-5128 - AUUGACUACAACCCCCUG 18 4874 myoC-5129 - GAUUGACUACAACCCCCUG 19 4875 myoC-2959 - UG AU UG ACU ACAACCCCCUG 20 1848 myoC-5130 - AUGAUUGACUACAACCCCCUG 21 4876 myoC-5131 - CAUGAUUGACUACAACCCCCUG 22 4877 myoC-5132 - GCAUGAUUGACUACAACCCCCUG 23 4878 myoC-5133 - AGCAUGAU UGACUACAACCCCCUG 24 4879 myoC-5134 - AGAUGCUCAGGGCUCCUG 18 4880 myoC-5135 - GAGAUGCUCAGGGCUCCUG 19 4881 myoC-412 - GGAGAUGCUCAGGGCUCCUG 20 776 myoC-5136 - AGG AGAUGCUCAGGGCUCCUG 21 4882 myoC-5137 - AAGG AGAUGCUCAGGGCUCCUG 22 4883 myoC-5138 - GAAGG AGAUGCUCAGGGCUCCUG 23 4884 myoC-5139 - AGAAGGAGAUGCUCAGGGCUCCUG 24 4885 myoC-5140 - CCUGGGGGGAGCAGGCUG 18 4886 myoC-5141 - UCCUGGGGGGAGCAGGCUG 19 4887 myoC-3014 - CUCCUGGGGGGAGCAGGCUG 20 2800 myoC-5142 - GCUCCUGGGGGGAGCAGGCUG 21 4888 myoC-5143 - GGCUCCUGGGGGGAGCAGGCUG 22 4889 myoC-5144 - GGGCUCCUGGGGGGAGCAGGCUG 23 4890 myoC-5145 - AGGGCUCCUGGGGGGAGCAGGCUG 24 4891 myoC-5146 - AGGUAAGAAUGCAGAGUG 18 4892 myoC-5147 - AAGGUAAGAAUGCAGAGUG 19 4893 myoC-3189 - GAAGGUAAGAAUGCAGAGUG 20 2935 myoC-5148 - AG AAGGUAAGAAUGCAGAGUG 21 4894 myoC-5149 - GAG AAGGUAAGAAUGCAGAGUG 22 4895 myoC-5150 - AG AG AAGGUAAGAAUGCAGAGUG 23 4896 myoC-5151 - CAGAGAAGGUAAGAAUGCAGAGUG 24 4897 myoC-5152 - CUGGCUAUCUCAGGAGUG 18 4898 myoC-5153 - UCUGGCUAUCUCAGGAGUG 19 4899 myoC-5154 - AUCUGGCUAUCUCAGGAGUG 20 4900 myoC-5155 - CAUCUGGCUAUCUCAGGAGUG 21 4901 myoC-5156 - CCAUCUGGCUAUCUCAGGAGUG 22 4902 myoC-5157 - CCCAUCUGGCUAUCUCAGGAGUG 23 4903 myoC-5158 - GCCCAUCUGGCUAUCUCAGGAGUG 24 4904 myoC-5159 - UGAAUUUACCAGGAUGUG 18 4905 myoC-5160 - CUGAAU U U ACCAGG AUG UG 19 4906 myoC-5161 - UCUGAAUUUACCAGGAUGUG 20 4907 myoC-5162 - UUCUGAAUUUACCAGGAUGUG 21 4908 myoC-5163 - UUUCUGAAUUUACCAGGAUGUG 22 4909 myoC-5164 - UU UUCUGAAUUUACCAGGAUGUG 23 4910 myoC-5165 - CUU UUCUGAAU UUACCAGGAUGUG 24 4911 myoC-5166 - UCUCU UCCUUGAACUU UG 18 4912 myoC-5167 - U UCUCUUCCU UGAACUU UG 19 4913 myoC-3190 - GUUCUCU UCCU UGAACU UUG 20 2936 myoC-5168 - CGUUCUCUUCCUUGAACUUUG 21 4914 myoC-5169 - ACGU UCUCUUCCUUGAACUU UG 22 4915 myoC-5170 - AACGUUCUCUUCCUUGAACU UUG 23 4916 myoC-5171 - CAACGUUCUCUUCCUUGAACUU UG 24 4917 myoC-5172 - CCUGCU UCCCGAAUU UUG 18 4918 myoC-5173 - UCCUGCU UCCCGAAU UUUG 19 4919 myoC-5174 - UUCCUGCUUCCCGAAU UUUG 20 4920 myoC-5175 - GUUCCUGCUUCCCGAAU UUUG 21 4921 myoC-5176 - AGUUCCUGCUUCCCGAAUUU UG 22 4922 myoC-5177 - AAGUUCCUGCU UCCCGAAUU UUG 23 4923 myoC-5178 - GAAGUUCCUGCUUCCCGAAU UUUG 24 4924 myoC-5179 - AAACUGAACCCAGAGAAU 18 4925 myoC-5180 - CAAACUGAACCCAGAGAAU 19 4926 myoC-5181 - CCAAACUGAACCCAGAGAAU 20 4927 myoC-5182 - UCCAAACUGAACCCAGAGAAU 21 4928 myoC-5183 - CUCCAAACUGAACCCAGAGAAU 22 4929 myoC-5184 - UCUCCAAACUGAACCCAGAGAAU 23 4930 myoC-5185 - CUCUCCAAACUGAACCCAGAGAAU 24 4931 myoC-5186 - GCAGUUUCUACGUGGAAU 18 4932 myoC-5187 - UGCAGUUUCUACGUGGAAU 19 4933 myoC-5188 - AUGCAGUU UCUACGUGGAAU 20 4934 myoC-5189 - AAUGCAGUUUCUACGUGGAAU 21 4935 myoC-5190 - UAAUGCAGUUUCUACGUGGAAU 22 4936 myoC-5191 - UUAAUGCAGUUUCUACGUGGAAU 23 4937 myoC-5192 - UUUAAUGCAGUUUCUACGUGGAAU 24 4938 myoC-5193 - CAUCAAGCUCUCCAAGAU 18 4939 myoC-5194 - ACAUCAAGCUCUCCAAGAU 19 4940 myoC-2964 - GACAUCAAGCUCUCCAAGAU 20 1852 myoC-5195 - UGACAUCAAGCUCUCCAAGAU 21 4941 myoC-5196 - AUGACAUCAAGCUCUCCAAGAU 22 4942 myoC-5197 - UAUGACAUCAAGCUCUCCAAGAU 23 4943 myoC-5198 - UUAUGACAUCAAGCUCUCCAAGAU 24 4944 myoC-5199 - CC AG A AC U G U C A U A AG A U 18 4945 myoC-5200 - UCCAGAACUGUCAUAAGAU 19 4946 myoC-2904 - GUCCAGAACUGUCAUAAGAU 20 1806 myoC-5201 - AG UCCAGAACUGUCAUAAGAU 21 4947 myoC-5202 - GAG UCCAGAACUGUCAUAAGAU 22 4948 myoC-5203 - UG AG UCCAGAACUGUCAUAAGAU 23 4949 myoC-5204 - CUGAGUCCAGAACUGUCAUAAGAU 24 4950 myoC-5205 - UUCUGAAUUUACCAGGAU 18 4951 myoC-5206 - U UUCUGAAUUUACCAGGAU 19 4952 myoC-5207 - UU UUCUGAAUUUACCAGGAU 20 4953 myoC-5208 - CUUU UCUGAAU UUACCAGGAU 21 4954 myoC-5209 - UCUUU UCUGAAUUUACCAGGAU 22 4955 myoC-5210 - UUCUU UUCUGAAUUUACCAGGAU 23 4956 myoC-5211 - UUUCUU UUCUGAAUUUACCAGGAU 24 4957 myoC-5212 - CAAGUAUGGUGUGUGGAU 18 4958 myoC-5213 - GCAAGUAUGGUGUGUGGAU 19 4959 myoC-5214 - GGCAAGUAUGGUGUGUGGAU 20 4960 myoC-5215 - UGGCAAGUAUGGUGUGUGGAU 21 4961 myoC-5216 - CUGGCAAGUAUGGUGUGUGGAU 22 4962 myoC-5217 - ACUGGCAAGUAUGGUGUGUGGAU 23 4963 myoC-5218 - UACUGGCAAGUAUGGUGUGUGGAU 24 4964 myoC-5219 - UUCAAGUUUUCUUGUGAU 18 4965 myoC-5220 - GU UCAAGUUUUCUUGUGAU 19 4966 myoC-5221 - AGUUCAAG UUUUCUUGUGAU 20 4967 myoC-5222 - UAGUUCAAGUUUUCUUGUGAU 21 4968 myoC-5223 - AUAGUUCAAGUUUUCUUGUGAU 22 4969 myoC-5224 - CAUAGUUCAAGUUUUCUUGUGAU 23 4970 myoC-5225 - ACAUAGU UCAAGUUU UCUUGUGAU 24 4971 myoC-5226 - CGGGUGCUGUGGUGUACU 18 4972 myoC-5227 - ACGGGUGCUGUGGUGUACU 19 4973 myoC-373 - CACGGGUGCUGUGGUGUACU 20 759 myoC-5228 - GCACGGGUGCUGUGGUGUACU 21 4974 myoC-5229 - AGCACGGGUGCUGUGGUGUACU 22 4975 myoC-5230 - AAGCACGGGUGCUG UGGUGUACU 23 4976 myoC-5231 - AAAGCACGGGUGCUGUGGUGUACU 24 4977 myoC-5232 - UGGAACUCGAACAAACCU 18 4978 myoC-5233 - CUGGAACUCGAACAAACCU 19 4979 myoC-397 - UCUGGAACUCGAACAAACCU 20 767 myoC-5234 - AUCUGGAACUCGAACAAACCU 21 4980 myoC-5235 - AAUCUGGAACUCGAACAAACCU 22 4981 myoC-5236 - GAAUCUGGAACUCGAACAAACCU 23 4982 myoC-5237 - AGAAUCUGGAACUCG A AC A A ACC U 24 4983 myoC-5238 - GAGAUGCUCAGGGCUCCU 18 4984 myoC-5239 - GGAGAUGCUCAGGGCUCCU 19 4985 myoC-411 - AGGAGAUGCUCAGGGCUCCU 20 775 myoC-5240 - AAGGAGAUGCUCAGGGCUCCU 21 4986 myoC-5241 - GAAGGAGAUGCUCAGGGCUCCU 22 4987 myoC-5242 - AG AAGGAGAUGCUCAGGGCUCCU 23 4988 myoC-5243 - CAG AAGGAGAUGCUCAGGGCUCCU 24 4989 myoC-5244 - AGGAGAGCCUCUCACGCU 18 4990 myoC-5245 - UAGGAGAGCCUCUCACGCU 19 4991 myoC-5246 - GUAGGAGAGCCUCUCACGCU 20 4992 myoC-5247 - GG UAGGAGAGCCUCUCACGCU 21 4993 myoC-5248 - GGGU AGGAGAGCCUCUCACGCU 22 4994 myoC-5249 - UGGGUAGGAGAGCCUCUCACGCU 23 4995 myoC-5250 - UUGGGUAGGAGAGCCUCUCACGCU 24 4996 myoC-5251 - CCAGGAGGUAGCAAGGCU 18 4997 myoC-5252 - GCCAGGAGGUAGCAAGGCU 19 4998 myoC-1656 - AGCCAGGAGGUAGCAAGGCU 20 1919 myoC-5253 - CAGCCAGGAGGUAGCAAGGCU 21 4999 myoC-5254 - GCAGCCAGGAGGUAG C A AG G C U 22 5000 myoC-5255 - AGCAGCCAGGAGGUAGCAAGGCU 23 5001 myoC-5256 - CAGCAGCCAGGAGGUAGCAAGGCU 24 5002 myoC-5257 - ACCGAGACAGUGAAGGCU 18 5003 myoC-5258 - UACCGAGACAGUGAAGGCU 19 5004 myoC-2909 - AU ACCGAGACAGUGAAGGCU 20 1811 myoC-5259 - AAU ACCGAGACAGUGAAGGCU 21 5005 myoC-5260 - GAAU ACCGAGACAGUGAAGGCU 22 5006 myoC-5261 - UG AAU ACCGAGACAGUGAAGGCU 23 5007 myoC-5262 - CUG AAU ACCGAGACAGUGAAGGCU 24 5008 myoC-5263 - AUGGCAGAAGGAGAUGCU 18 5009 myoC-5264 - AAUGGCAGAAGGAGAUGCU 19 5010 myoC-3006 - CAAUGGCAGAAGGAGAUGCU 20 2797 myoC-5265 - GCAAUGGCAGAAGGAGAUGCU 21 5011 myoC-5266 - GGCAAUGGCAGAAGGAGAUGCU 22 5012 myoC-5267 - AGGCAAUGGCAGAAGGAGAUGCU 23 5013 myoC-5268 - CAGGCAAUGGCAGAAGGAGAUGCU 24 5014 myoC-5269 - GAGCCCAUCUGGCUAUCU 18 5015 myoC-5270 - AGAGCCCAUCUGGCUAUCU 19 5016 myoC-5271 - GAGAGCCCAUCUGGCUAUCU 20 5017 myoC-5272 - GGAGAGCCCAUCUGGCUAUCU 21 5018 myoC-5273 - AGGAGAGCCCAUCUGGCUAUCU 22 5019 myoC-5274 - AAGG AGAGCCCAUCUGGCUAUCU 23 5020 myoC-5275 - GAAGG AGAGCCCAUCUGGCUAUCU 24 5021 myoC-5276 - AU UCAGGAAU UGUAGUCU 18 5022 myoC-5277 - UAUUCAGGAAU UGUAGUCU 19 5023 myoC-3025 - CUAUUCAGGAAUUGUAGUCU 20 2808 myoC-5278 - ACUAU UCAGGAAU UGUAGUCU 21 5024 myoC-5279 - AACUAUUCAGGAAUUGUAGUCU 22 5025 myoC-5280 - UAACUAU UCAGGAAUUGUAGUCU 23 5026 myoC-5281 - CUAACUAUUCAGGAAUUGUAGUCU 24 5027 myoC-5282 - CCUUCCAGGAACUGAAGU 18 5028 myoC-5283 - GCCUUCCAGGAACUGAAGU 19 5029 myoC-5284 - GGCCUUCCAGGAACUGAAGU 20 5030 myoC-5285 - UGGCCU UCCAGGAACUGAAGU 21 5031 myoC-5286 - UUGGCCUUCCAGGAACUGAAGU 22 5032 myoC-5287 - UU UGGCCU UCCAGGAACUGAAGU 23 5033 myoC-5288 - CU UUGGCCUUCCAGGAACUGAAG U 24 5034 myoC-5289 - AAGGUAAGAAUGCAGAGU 18 5035 myoC-5290 - GAAGG U AAGAAUGCAG AG U 19 5036 myoC-3191 - AGAAGGUAAGAAUGCAGAGU 20 2937 myoC-5291 - GAGAAGGUAAGAAUGCAGAGU 21 5037 myoC-5292 - AGAGAAGGUAAGAAUGCAGAGU 22 5038 myoC-5293 - CAGAGAAGGUAAGAAUGCAGAGU 23 5039 myoC-5294 - CCAGAGAAGGUAAGAAUGCAGAGU 24 5040 myoC-5295 - CUAUUCAGGAAUUGUAGU 18 5041 myoC-5296 - ACUAU UCAGGAAUUGUAGU 19 5042 myoC-3024 - AACUAUUCAGGAAUUGUAGU 20 2807 myoC-5297 - UAACUAU UCAGGAAUUGUAGU 21 5043 myoC-5298 - CUAACUAUUCAGGAAUUGUAGU 22 5044 myoC-5299 - UCUAACUAUUCAGGAAU UGUAGU 23 5045 myoC-5300 - AUCUAACUAU UCAGGAAUUGUAGU 24 5046 myoC-5301 - GGAGAGGGAGACACCGGU 18 5047 myoC-5302 - UGGAGAGGGAGACACCGGU 19 5048 myoC-5303 - GUGGAGAGGGAGACACCGGU 20 5049 myoC-5304 - AG UGGAGAGGGAGACACCGGU 21 5050 myoC-5305 - GAGUGGAGAGGGAGACACCGGU 22 5051 myoC-5306 - GGAGUGGAGAGGGAGACACCGGU 23 5052 myoC-5307 - AGGAGUGGAGAGGGAGACACCGGU 24 5053 myoC-5308 - UGGAGAACUAGU UUGGGU 18 5054 myoC-5309 - GUGGAGAACUAGUUUGGGU 19 5055 myoC-356 - UGUGGAGAACUAGUUUGGGU 20 742 myoC-5310 - AUGUGGAGAACUAGUU UGGGU 21 5056 myoC-5311 - GAUGUGGAGAACUAGUU UGGGU 22 5057 myoC-5312 - GGAUG UGGAGAACUAGUUUGGGU 23 5058 myoC-5313 - AGGAUGUGGAGAACUAGUUUGGGU 24 5059 myoC-5314 - GUUCCUGCUUCCCGAAU U 18 5060 myoC-5315 - AGUUCCUGCUUCCCGAAUU 19 5061 myoC-5316 - AAGUUCCUGCUUCCCGAAUU 20 5062 myoC-5317 - GAAGU UCCUGCUUCCCGAAUU 21 5063 myoC-5318 - UGAAGU UCCUGCUUCCCGAAUU 22 5064 myoC-5319 - CUGAAGUUCCUGCUUCCCGAAUU 23 5065 myoC-5320 - ACUGAAGUUCCUGCUUCCCGAAUU 24 5066 myoC-5321 - CACAUAACCCUUUACAU U 18 5067 myoC-5322 - UCACAUAACCCUUUACAUU 19 5068 myoC-5323 - CUCACAU AACCCU U U ACAU U 20 5069 myoC-5324 - UCUCACAU AACCCU U U ACAU U 21 5070 myoC-5325 - GUCUCACAU AACCCU UU ACAU U 22 5071 myoC-5326 - GGUCUCACAUAACCCUU UACAU U 23 5072 myoC-5327 - GGGUCUCACAUAACCCUUUACAUU 24 5073 myoC-5328 - UCAAGU UUUCU UGUGAUU 18 5074 myoC-5329 - UUCAAGUUUUCUUGUGAUU 19 5075 myoC-490 - GUUCAAGUUUUCUUGUGAUU 20 832 myoC-5330 - AGUUCAAG UUUUCU UGUGAUU 21 5076 myoC-5331 - UAGUUCAAGUUUUCUUGUGAU U 22 5077 myoC-5332 - AUAGUUCAAGUUUUCUUGUGAUU 23 5078 myoC-5333 - CAUAGUUCAAGU UUUCUUGUGAUU 24 5079 myoC-5334 - GGUCACCAUCUAACUAU U 18 5080 myoC-5335 - UGGUCACCAUCUAACUAUU 19 5081 myoC-3022 - AUGGUCACCAUCUAACUAUU 20 2806 myoC-5336 - CAUGGUCACCAUCUAACUAUU 21 5082 myoC-5337 - ACAUGGUCACCAUCUAACUAU U 22 5083 myoC-5338 - AACAUGGUCACCAUCUAACUAUU 23 5084 myoC-5339 - GAACAUGGUCACCAUCUAACUAUU 24 5085 myoC-5340 - UAUCUUCUG UCAGCAUU U 18 5086 myoC-5341 - UUAUCUUCUGUCAGCAU UU 19 5087 myoC-5342 - UUUAUCUUCUGUCAGCAUUU 20 5088 myoC-5343 - CUU UAUCU UCUGUCAGCAUUU 21 5089 myoC-5344 - CCU UUAUCUUCUGUCAGCAU UU 22 5090 myoC-5345 - UCCU UUAUCUUCUGUCAGCAU UU 23 5091 myoC-5346 - AUCCU UUAUCUUCUGUCAGCAUUU 24 5092 myoC-5347 - UUCUCUUCCUUGAACUU U 18 5093 myoC-5348 - GUUCUCU UCCU UGAACU UU 19 5094 myoC-5349 - CGUUCUCUUCCUUGAACUUU 20 5095 myoC-5350 - ACGUUCUCUUCCU UGAACU UU 21 5096 myoC-5351 - AACGUUCUCU UCCUUGAACUUU 22 5097 myoC-5352 - CAACGU UCUCUUCCUUGAACUU U 23 5098 myoC-5353 - CCAACG UUCUCUUCCUU GAACU U U 24 5099
Table 8 A provides exemplary targeting domains for knocking out the MYOC gene selected according to the first tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon), have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 8A
Figure imgf000291_0001
Table 8B provides exemplary targeting domains for knocking out the MYOC gene selected according to the second tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 8B
Figure imgf000292_0001
Table 8C provides exemplary targeting domains for knocking out the MYOC gene selected according to the third tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon) and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 8C
Figure imgf000292_0002
Table 8D provides exemplary targeting domains for knocking out the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within the first 500 bp of the coding sequence (e.g., within 500 bp downstream from the start codon). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table lean be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 8D
Figure imgf000293_0001
Table 8E provides exemplary targeting domains for knocking out the MYOC gene selected according to the fifth tier parameters. The targeting domains fall in the coding sequence of the gene, downstream of the first 500bp of coding sequence (e.g., anywhere from +500 (relative to the start codon) to the stop codon of the gene). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through
complementary base pairing. Any of the targeting domains in the Table lean be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 8E
5th Tier
DNA Target Site SEQ ID gRNA Name Targeting Domain
Strand Length NO myoC-5366 - GCAGAUGCUACCGUCAA 17 5112 myoC-5367 - AAGAUGCAUU UACUACA 17 5113 myoC-5368 - CAGCCAGCCAGGGCCCA 17 5114 myoC-3157 - CCGCUAUAAGUACAGCA 17 2843 myoC-2994 + UCAAGU UGUCCCAGGCA 17 1873 myoC-5369 + GCUGGCCAGAGGAGCUA 17 5115 myoC-5370 + CGAGUACACCACAGCAC 17 5116 myoC-5371 + CCUUGCUACCUCCUGGC 17 5117 myoC-2950 + UCCGUGGUAGCCAGCUC 17 1842 myoC-5372 - UUACUACAGUUGGCUUC 17 5118 myoC-3093 - ACAU AG U UCAAG U U U U C 17 2852 myoC-5373 + UCUGCUUCCUU UAGAAG 17 5119 myoC-5374 + CUGUAAAUGACCCAGAG 17 5120 myoC-5375 + CCUGGGUGUAGGGGUAG 17 5121 myoC-3094 + GACAUCCGUGCCAACUG 17 2853 myoC-5376 + CCU UCUGCCAUUGCCUG 17 5122 myoC-2995 + AGGCUUUUCACAUCUUG 17 1874 myoC-5377 + GAAGUUAUGCUUUUUAU 17 5123 myoC-5378 + UGAAGGCAUUGGCGACU 17 5124 myoC-5379 + AAGAAACUAUUAUGCCU 17 5125 myoC-3097 + GUGACCAUGUUCAUCCU 17 2855 myoC-5380 - UCCGAGCUAACUG A AG U 17 5126 myoC-3096 + CCCAGGUUUGUUCGAGU 17 2854 myoC-5381 + CAUUGCCUGUACAGCUU 17 5127 myoC-5382 - AGGGCCCAGGCAGCUUU 17 5128 myoC-5383 - UCAGCAGAUGCUACCGUCAA 20 5129 myoC-5384 - AGUAAGAUGCAUUUACUACA 20 5130 myoC-5385 - AGCCAGCCAGCCAGGGCCCA 20 5131 myoC-3156 - GAACCGCUAUAAGUACAGCA 20 2842 myoC-2973 + UGUUCAAGUUGUCCCAGGCA 20 1858 myoC-5386 + GAUGCUGGCCAGAGGAGCUA 20 5132 myoC-5387 + CCCCGAGUACACCACAGCAC 20 5133 myoC-5388 + CAGCCUUGCUACCUCCUGGC 20 5134 myoC-2924 + CUGUCCGUGGUAGCCAGCUC 20 1822 myoC-5389 - CAUUUACUACAGUUGGCUUC 20 5135 myoC-3087 - AUGACAUAGUUCAAGUUUUC 20 2846 myoC-5390 + UAUUCUGCUUCCUUUAGAAG 20 5136 myoC-5391 + GUGCUGUAAAUGACCCAGAG 20 5137 myoC-4390 + UCUCCUGGGUGUAGGGGUAG 20 4136 myoC-3088 + GCGGACAUCCGUGCCAACUG 20 2847 myoC-5392 + UCUCCUUCUGCCAUUGCCUG 20 5138 myoC-2974 + UGGAGGCUUUUCACAUCUUG 20 1859 myoC-5393 + UUAGAAGUUAUGCUUUUUAU 20 5139 myoC-5394 + UGAUGAAGGCAUUGGCGACU 20 5140 myoC-5395 + AGG AAGAAACUAUUAUGCCU 20 5141 myoC-3091 + AUGGUGACCAUGUUCAUCCU 20 2849 myoC-5396 - AAGUCCGAGCUAACUGAAGU 20 5142 myoC-3090 + UCUCCCAGGUUUGUUCGAGU 20 2848 myoC-5397 + UGCCAUUGCCUGUACAGCUU 20 5143 myoC-5398 - GCCAGGGCCCAGGCAGCUUU 20 5144
Table 9A provides exemplary targeting domains for knocking down the MYOC gene selected according to the first tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 9A
Figure imgf000295_0001
myoC-973 - GGGGACAGUGUUUCCUCAGA 20 1273 myoC-1012 - GCAUGGGUUUUCCUUCACGA 20 1312 myoC-995 - GCGGGUGCUGAAAGGCAGGA 20 1295 myoC-848 - GAAUCU UGCUGGCAGCGUGA 20 988 myoC-2163 + GAUGCACCAGGACGAUUCAC 20 2269 myoC-126 + GCAGCUGGAUUCAUUGGGAC 20 523 myoC-680 - GGGGGAGCCCUGCAAGCACC 20 1020 myoC-1116 + GUCUCCAGCUCAGAUGCACC 20 1416 myoC-741 + GCAGGUUGCUCAGGACACCC 20 1007 myoC-681 - GGGGAGCCCUGCAAGCACCC 20 1019 myoC-857 - G CC AG C A AG G CC ACCC A U CC 20 990 myoC-123 + GUCGAGCUUUGGUGGCCUCC 20 485 myoC-977 - GGAAAGGGGCCUCCACGUCC 20 1277 myoC-105 - GAGGCGGGAGCGGGACCAGC 20 510 myoC-104 - GGGCACCCUGAGGCGGGAGC 20 509 myoC-117 + GCUGGUCCCGCUCCCGCCUC 20 484 myoC-709 + GACUCGGGCUUGGGGGCCUC 20 1003 myoC-125 + GACAUGGCCUGGCUCUGCUC 20 522 myoC-965 - GCUCCAGAAAGGAAAUGGAG 20 1265 myoC-971 - GUCUAACGGAGAAUCUGGAG 20 1271 myoC-1001 - GAUGUUCAGUGUUGU UCACG 20 1301 myoC-682 - GGGAGCCCUGCAAGCACCCG 20 979 myoC-114 + GAACUGACUUGUCUCGGAGG 20 482 myoC-696 - GCUGCCUCCAUCGUGCCCGG 20 976 myoC-751 + GGAGAGGAAACCUCUGCCGG 20 1013 myoC-719 + GGCAGCAGGGGGCGCUAGGG 20 1017 myoC-871 + GGGGAGCCAGCCCUUCAUGG 20 992 myoC-712 + GGGGCCUCCGGGCACGAUGG 20 980 myoC-679 - GAGGUU UCCUCUCCAGCUGG 20 1005 myoC-121 + GGUCCAAGGUCAAUUGGUGG 20 520 myoC-122 + GGAGCUGAGUCGAGCUU UGG 20 521 myoC-707 + GCUUGGAAGACUCGGGCUUG 20 977 myoC-127 + GCAUCGGCCACUCUGGUCAU 20 487 myoC-861 + GUGCUGAGAGGUGCCUGGAU 20 995 myoC-837 - GUAAAACCAGGUGGAGAUAU 20 994 myoC-838 - GGAGAUAUAGGAACUAU UAU 20 991 myoC-1107 + GUGAACAACACUGAACAUCU 20 1407 myoC-106 - GGAAACCCAAACCAGAGAGU 20 479 myoC-878 + GUGGCCACGUGAGGCUGGGU 20 1054 myoC-95 - GCCUGCCUGGUGUGGGAUGU 20 500 myoC-115 + GUCUCGGAGGAGGUUGCUGU 20 516 myoC-93 - GCUUCUGGCCUGCCUGGUGU 20 478 myoC-844 - GGGGUAUGGGUGCAUAAAUU 20 993 myoC-839 - GAGAUAUAGGAACUAUUAU U 20 989 myoC-706 + GGCUUGGAAGACUCGGGCU U 20 978 myoC-124 + GGCCUCCAGGUCUAAGCGUU 20 486 myoC-91 | - | GUGCACGUUGCUGCAGCUU U | 20 | 477
Table 9B provides exemplary targeting domains for knocking down the MYOC gene selected according to the second tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC
Table 9B
Figure imgf000297_0001
myoC-256 - AGCUCGACUCAGCUCCC 17 642 myoC-923 - AGCAAGGCCACCCAUCC 17 1231 myoC-1247 - AAG G GG CCU CCACG U CC 17 1547 myoC-5399 - CUUCCCGUGAAUCGUCC 17 5145 myoC-1248 - ACGUCCAGGAGAAUUCC 17 1548 myoC-773 - AGUCACAGCGCUGCAGC 17 1143 myoC-2390 - UCCUGGUGCAUCUGAGC 17 2434 myoC-1264 - AGCGGGUGCUGAAAGGC 17 1564 myoC-774 + UUCACGGGAAGCGAGGC 17 1167 myoC-815 + CAACCAGUGGCACGGGC 17 1146 myoC-1272 - AGUGUUGUUCACGGGGC 17 1572 myoC-5400 - UGUCCU UGUGUUCUGGC 17 5146 myoC-804 + ACUGGGU UUAAGUUGGC 17 1132 myoC-929 + UGGAUGGGUGGCCUUGC 17 1255 myoC-1238 - UAGUCUAACGGAGAAUC 17 1538 myoC-305 + ACUGGCAUCGGCCACUC 17 691 myoC-2902 + CUUGGUGAGGCUUCCUC 17 2790 myoC-269 - CCG AG ACAAG UCAG U U C 17 655 myoC-5401 - CUUGAAGCCCCCGGCAG 17 5147 myoC-930 + AUGCCCGAGCUCCAGAG 17 1236 myoC-1241 - UAACGGAGAAUCUGGAG 17 1541 myoC-1380 + UGGAAU UCUCCUGGACG 17 1680 myoC-827 + AGAGGAAACCUCUGCCG 17 1134 myoC-5402 + ACGAUUCACGGGAAGCG 17 5148 myoC-766 - UCACUGCCCUACCUUCG 17 1160 myoC-296 + AGGUCAAU UGGUGGAGG 17 682 myoC-776 + AGCGCUGUGACUGAUGG 17 1137 myoC-255 - CCAACGCU UAGACCUGG 17 641 myoC-1239 - UCUAACGGAGAAUCUGG 17 1539 myoC-270 - AGACAAGUCAGUUCUGG 17 656 myoC-1381 + AAUUCUCCUGGACGUGG 17 1681 myoC-767 - CUGCCCUACCU UCGUGG 17 1157 myoC-3158 - ACCAAGCCUCUGCAAUG 17 2904 myoC-252 - CCAGUAUACCU UCAGUG 17 638 myoC-294 + CCUGGUCCAAGGUCAAU 17 680 myoC-304 + UGAAGGUAUACUGGCAU 17 690 myoC-1281 - AAUUCCAGGGUGUGCAU 17 1581 myoC-306 + UCGGCCACUCUGGUCAU 17 692 myoC-257 - CCUCCACCAAUUGACCU 17 643 myoC-1369 + CCGUGAAUUAACGGCCU 17 1669 myoC-782 + CUUGGAAGACUCGGGCU 17 1158 myoC-281 + CCAGAACUGACUUGUCU 17 667 myoC-803 + CAGCACUGGGU UUAAGU 17 1150 myoC-268 - AACCCAAACCAG AG AG U 17 654 myoC-297 + CCUCCAGGUCUAAGCGU 17 683 myoC-783 + U UGGAAGACUCGGGCU U 17 1169 myoC-298 + CUCCAGGUCUAAGCGUU 17 684 myoC-951 + CCUUCCAGAAGUCUGUU 17 1242 myoC-975 - AGUGUUUCCUCAGAGGGAAA 20 1275 myoC-974 - CAGUGUUUCCUCAGAGGGAA 20 1274 myoC-1098 + UCACUUCUUCCGUGAAU UAA 20 1398 myoC-829 - CUGUCCCUGCUACGUCU UAA 20 1207 myoC-722 + UAGGGAGGUGGCCUUGUUAA 20 1115 myoC-1013 - UCACGAAGGCCU UUAU UUAA 20 1313 myoC-889 + CUGGUGUGCUGAUUUCAACA 20 1206 myoC-227 + UAAGU UAUGGAUGACUGACA 20 613 myoC-1009 - AGUCAGCUGUUAAAAU UCCA 20 1309 myoC-856 - AGCUCGGGCAUGAGCCAGCA 20 1183 myoC-714 + CGGGCACGAUGGAGGCAGCA 20 1105 myoC-894 + AAGUCCUUUAAGACGUAGCA 20 1173 myoC-736 + U A AC A A A AC A ACC AG U G G C A 20 1114 myoC-1010 - U UAAAAU UCCAGGGUGUGCA 20 1310 myoC-745 + CAGGACCCCGGGUGCUUGCA 20 1098 myoC-213 + CUGG UCCCGCUCCCGCCUCA 20 599 myoC-1017 - UUUCCUAGGCCGUUAAUUCA 20 1317 myoC-2164 + AG AUGCACCAGG ACG AU UCA 20 2270 myoC-868 + ACUGGGGAGCCAGCCCU UCA 20 1177 myoC-999 - CAGAUGUUCAGUGU UGUUCA 20 1299 myoC-723 + CUGCGCACAAUUCU UCAAGA 20 1109 myoC-728 + AGAAACUGUCACCUCCACGA 20 1084 myoC-711 + UUGGGGGCCUCCGGGCACGA 20 1123 myoC-970 - AGUCUAACGGAGAAUCUGGA 20 1270 myoC-846 - ACUCCAAACAGACUUCUGGA 20 1176 myoC-1006 - AGAAGAAGUCUAUU UCAUGA 20 1306 myoC-233 + AUUGGGACUGGCCACACUGA 20 619 myoC-698 + AGCUGCAGCGCUGUGACUGA 20 1089 myoC-1101 + UUAAAUAAAGGCCUUCGUGA 20 1401 myoC-730 + CUGUCACCUCCACGAAGGUA 20 1111 myoC-841 - UAGGAACUAU UAUUGGGGUA 20 1210 myoC-226 + UGCUGUCUCUCUGUAAGUUA 20 612 myoC-721 + CUAGGGAGGUGGCCUUGUUA 20 1106 myoC-685 - AACCUGCCAGCCCGUGCCAC 20 1079 myoC-737 + AAC AAA ACAACCAG U G G CAC 20 1077 myoC-1000 - AGAUGUUCAGUGUUGUUCAC 20 1300 myoC-1018 - UAAUUCACGGAAGAAGUGAC 20 1318 myoC-865 + CCAGAGAGGUU UAUAUAUAC 20 1195 myoC-234 + UGGCCACACUGAAGGUAUAC 20 620 myoC-888 + CACACU U ACACCAGG ACU AC 20 1189 myoC-886 + AUAGUUCCUAUAUCUCCACC 20 1185 myoC-179 - CAGCACCCAACGCU U AG ACC 20 565 myoC-183 - CCACCAAUUGACCUUGGACC 20 569 myoC-1216 + CACAAGGACAGCACCCUACC 20 1516 myoC-1102 + AGGAAAACCCAUGCACACCC 20 1402 myoC-181 - CAAAGCUCGACUCAGCUCCC 20 567 myoC-1114 + UCCAU UUCCUU UCUGGAGCC 20 1414 myoC-228 + UAUGGAUGACUGACAUGGCC 20 614 myoC-859 + CUGCUGUGCUGAGAGGUGCC 20 1203 myoC-688 - UGUGACUCGU UCAUUCAUCC 20 1121 myoC-710 + ACUCGGGCU UGGGGGCCUCC 20 1082 myoC-222 + AUUGGUGGAGGAGGCUCUCC 20 608 myoC-1109 + CCCACCUCCUGGAAUUCUCC 20 1409 myoC-5403 - UCGCU UCCCGUGAAUCGUCC 20 5149 myoC-683 - CCUGCAAGCACCCGGGGUCC 20 1103 myoC-978 - UCCACGUCCAGGAGAAUUCC 20 1278 myoC-212 + CUCUGGUUUGGGU UUCCAGC 20 598 myoC-713 + CCGGGCACGAUGGAGGCAGC 20 1102 myoC-697 - AUCAGUCACAGCGCUGCAGC 20 1094 myoC-1844 - UCGUCCUGGUGCAUCUGAGC 20 2054 myoC-893 + CAAGUCCU UUAAGACGUAGC 20 1187 myoC-994 - CUGAGCGGGUGCUGAAAGGC 20 1294 myoC-239 + CCCCACAUCCCACACCAGGC 20 625 myoC-5404 + CG AU UCACGGG AAGCG AGGC 20 5150 myoC-875 + CAGAGGUGGCCACGUGAGGC 20 1192 myoC-738 + A A AC A ACC AG UGGCACGGGC 20 1076 myoC-1002 - U UCAGUGUUGUUCACGGGGC 20 1302 myoC-739 + AACCAGUGGCACGGGCUGGC 20 1078 myoC-727 + AGCACUGGGU UUAAGU UGGC 20 1086 myoC-744 + CCAGGACCCCGGGUGCU UGC 20 1101 myoC-968 - AACUAGUCUAACGGAGAAUC 20 1268 myoC-1106 + CG U G A AC A AC AC U G A AC A U C 20 1406 myoC-236 + UAUACUGGCAUCGGCCACUC 20 622 myoC-2356 + AGGCUUGGUGAGGCUUCCUC 20 2410 myoC-855 - UAUAAACCUCUCUGGAGCUC 20 1211 myoC-740 + CACGGGCUGGCAGGU UGCUC 20 1096 myoC-241 + AGCUGGACAGCUGGCAUCUC 20 627 myoC-853 - CCAGUAUAUAUAAACCUCUC 20 1197 myoC-732 + ACCAUUUUGUCUCUGGUGUC 20 1081 myoC-170 - AGCUGUCCAGCUGCUGCUUC 20 556 myoC-191 - CCUCCGAGACAAGUCAGUUC 20 577 myoC-1215 - AGGGUGCUGUCCUUGUGUUC 20 1515 myoC-735 + AG U G AU AAC AAA AC AACCAG 20 1092 myoC-3159 + AC AG A AG A ACC U C A U U G C AG 20 2905 myoC-972 - AGGGGACAGUGU UUCCUCAG 20 1272 myoC-864 + CUCAUGCCCGAGCUCCAGAG 20 1201 myoC-190 - UGGGCACCCUGAGGCGGGAG 20 576 myoC-1110 + UCCUGGAAUUCUCCUGGACG 20 1410 myoC-750 + UGGAGAGGAAACCUCUGCCG 20 1119 myoC-5405 + AGG ACG AU UCACGGG AAGCG 20 5151 myoC-690 - CAGUCACUGCCCUACCU UCG 20 1100 myoC-979 - ACGUCCAGGAGAAUUCCAGG 20 1279 myoC-980 - UCCAGGAGAAUUCCAGGAGG 20 1280 myoC-720 + AGCAGGGGGCGCUAGGGAGG 20 1087 myoC-700 + AGCGCUGUGACUGAUGGAGG 20 1088 myoC-221 + CCAAGGUCAAUUGGUGGAGG 20 607 myoC-209 + CCAGAACUGACUUGUCUCGG 20 595 myoC-699 + UGCAGCGCUGUGACUGAUGG 20 1118 myoC-180 - CACCCAACGCU UAGACCUGG 20 566 myoC-969 - UAGUCUAACGGAGAAUCUGG 20 1269 myoC-192 - CCGAGACAAGUCAGU UCUGG 20 578 myoC-1111 + UGGAAUUCUCCUGGACGUGG 20 1411 myoC-691 - UCACUGCCCUACCUUCGUGG 20 1117 myoC-220 + CCUGGUCCAAGGUCAAU UGG 20 606 myoC-708 + CUUGGAAGACUCGGGCU UGG 20 1112 myoC-3160 - CUCACCAAGCCUCUGCAAUG 20 2906 myoC-867 + AGAGAGGUUUAUAUAUACUG 20 1180 myoC-177 - AUGCCAGUAUACCUUCAGUG 20 563 myoC-3161 + CUCAU UGCAGAGGCUUGGUG 20 2907 myoC-840 - AGAUAUAGGAACUAUUAUUG 20 1182 myoC-843 - UGGGGUAUGGGUGCAUAAAU 20 1214 myoC-219 + CAGCCUGGUCCAAGGUCAAU 20 605 myoC-1014 - CACGAAGGCCUU UAUU UAAU 20 1314 myoC-235 + CACUGAAGGUAUACUGGCAU 20 621 myoC-1011 - UAAAAUUCCAGGGUGUGCAU 20 1311 myoC-842 - AGGAACUAUUAU UGGGGUAU 20 1184 myoC-866 + CAGAGAGGU UUAUAUAUACU 20 1191 myoC-182 - CCUCCUCCACCAAUUGACCU 20 568 myoC-1099 + CUUCCGUGAAU UAACGGCCU 20 1399 myoC-961 - CAUCUGAGCUGGAGACUCCU 20 1261 myoC-684 - CUGCAAGCACCCGGGGUCCU 20 1108 myoC-1016 - AGGAAGCGAGCUCAUUUCCU 20 1316 myoC-854 - AUAUAAACCUCUCUGGAGCU 20 1186 myoC-3162 + AGAACCUCAUUGCAGAGGCU 20 2908 myoC-876 + AGAGGUGGCCACGUGAGGCU 20 1181 myoC-705 + AGGCUUGGAAGACUCGGGCU 20 1091 myoC-1003 - UCAGUGU UGU UCACGGGGCU 20 1303 myoC-208 + CCUCCAGAACUGACUUGUCU 20 594 myoC-726 + UUUCAGCACUGGGUUUAAGU 20 1125 myoC-225 + UGGCCUCCAGGUCUAAGCGU 20 611 myoC-729 + ACUGUCACCUCCACGAAGGU 20 1083 myoC-981 - CCAGGAGAAUUCCAGGAGGU 20 1281 myoC-232 + UCUGGGCAGCUGGAUUCAU U 20 618 myoC-169 - UGUGCACGU UGCUGCAGCUU 20 555 myoC-224 + CAGGGAGCUGAGUCGAGCUU 20 610 myoC-210 + CAGUCUCCAACUCUCUGGUU 20 596 myoC-885 + UAACCU UCCAGAAGUCUGUU 20 1208 myoC-830 - UACGUCUUAAAGGACUUGUU 20 1209
Table 9C provides exemplary targeting domains for knocking down the MYOC gene selected according to the third tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 9C
Figure imgf000302_0001
myoC-826 + GAGAGGAAACCUCUGCC 17 1023 myoC-897 - GU UCCUAGCAUAGUGCC 17 1074 myoC-771 - GCUGCCUCCAUCGUGCC 17 1030 myoC-162 + GAGCUUUGGUGGCCUCC 17 550 myoC-1232 - GGAGACUCCUUGGCUCC 17 1532 myoC-158 + GGUGGAGGAGGCUCUCC 17 548 myoC-156 + GCCCCUCCUGGGUCUCC 17 547 myoC-759 - G C A AG CACCCGGGGUCC 17 1027 myoC-752 - GAGGUUUCCUCUCCAGC 17 1026 myoC-790 + GGCACGAUGGAGGCAGC 17 1038 myoC-165 + GCUCUGCUCUGGGCAGC 17 552 myoC-134 - GGGGCUGCAGAGGGAGC 17 529 myoC-1262 - GGACGCUGGGGCUGAGC 17 1562 myoC-1258 - GCAGGGAGUGGGGACGC 17 1558 myoC-137 - GCUGGGCACCCUGAGGC 17 532 myoC-825 + GGAGAGGAAACCUCUGC 17 1034 myoC-140 - G CA AG A A A A U G AG A A U C 17 535 myoC-1376 + GAACAACACUGAACAUC 17 1676 myoC-781 + GGAGGCUUGGAAGACUC 17 1036 myoC-154 + GGUCCCGCUCCCGCCUC 17 545 myoC-817 + GGGCUGGCAGGUUGCUC 17 1042 myoC-153 + GGCAGUCUCCAACUCUC 17 544 myoC-808 + GCUCACCAU UUUGUCUC 17 1029 myoC-1485 - GUGCUGUCCUUGUGUUC 17 1785 myoC-948 + GGUGGGGCUGUGCACAG 17 1069 myoC-812 + GAUAACAAAACAACCAG 17 984 myoC-3163 + GAAGAACCUCAUUGCAG 17 2909 myoC-1242 - GGACAGUGUUUCCUCAG 17 1542 myoC-1255 - GUGGGGACUGCAGGGAG 17 1555 myoC-824 + GGCUCCCCCAGCUGGAG 17 1040 myoC-1261 - GGGACGCUGGGGCUGAG 17 1561 myoC-949 + GUGGGGCUGUGCACAGG 17 1072 myoC-902 - GUGUGUGU A A A ACC AG G 17 1073 myoC-133 - GCCCCAGGAGACCCAGG 17 528 myoC-778 + GUGACUGAUGGAGGAGG 17 1046 myoC-777 + GCUGUGACUGAUGGAGG 17 1031 myoC-943 + GGCCACGUGAGGCUGGG 17 1063 myoC-755 - GUUUCCUCUCCAGCUGG 17 1047 myoC-936 + GGAGCCAGCCCUUCAUG 17 1061 myoC-933 + GAGGUUUAUAUAUACUG 17 1057 myoC-136 - GGGAGCUGGGCACCCUG 17 531 myoC-754 - GGU UUCCUCUCCAGCUG 17 1045 myoC-1257 - GGGGACUGCAGGGAGUG 17 1557 myoC-1252 - GAGAAUUCCAGGAGGUG 17 1552 myoC-131 - GCCUGGUGUGGGAUGUG 17 526 myoC-1284 - GAAGGCCUUUAUU UAAU 17 1584 myoC-935 + GGGAGCCAGCCCU UCAU 17 1064 myoC-904 - GAUAUAGGAACUAU UAU 17 1058 myoC-135 - GGGCUGCAGAGGGAGCU 17 530 myoC-942 + GGUGGCCACGUGAGGCU 17 1068 myoC-957 + GUGCCAGGCACUAUGCU 17 1071 myoC-1251 - GGAGAAU UCCAGGAGGU 17 1551 myoC-944 + GCCACGUGAGGCUGGGU 17 1059 myoC-896 - GUCU UAAAGGACUUGU U 17 1001 myoC-689 - GCCAGACACCAGAGACAAAA 20 1008 myoC-997 - GAAAGGCAGGAAGGUGAAAA 20 1297 myoC-1007 - GAAGAAGUCUAU UUCAUGAA 20 1307 myoC-993 - GGGGCUGAGCGGGUGCUGAA 20 1293 myoC-881 + GCUGGGUGGGGCUGUGCACA 20 1050 myoC-120 + GGGCCUGGCAGCCUGGUCCA 20 519 myoC-998 - GCAGGAAGGUG A A A AG G G C A 20 1298 myoC-99 - GACCCAGGAGGGGCUGCAGA 20 504 myoC-718 + GGAGGCAGCAGGGGGCGCUA 20 1015 myoC-880 + GGCUGGGUGGGGCUGUGCAC 20 1051 myoC-1104 + G A A A AG A U A A A A AG G C U C AC 20 1404 myoC-835 - GUGUGUGUGUGUGUAAAACC 20 1055 myoC-742 + GCUCAGGACACCCAGGACCC 20 1009 myoC-97 - GGACCAGGCUGCCAGGCCCC 20 502 myoC-92 - GCUGCUGCU UCUGGCCUGCC 20 498 myoC-118 + GCUCCCUCUGCAGCCCCUCC 20 517 myoC-962 - GCUGGAGACUCCUUGGCUCC 20 1262 myoC-119 + GCAGCCCCUCCUGGGUCUCC 20 518 myoC-746 + GCU UGCAGGGCUCCCCCAGC 20 1012 myoC-676 - GCAGAGGUUUCCUCUCCAGC 20 1006 myoC-128 + G G C AG G CC AG A AG C AG C AG C 20 524 myoC-100 - GGAGGGGCUGCAGAGGGAGC 20 505 myoC-103 - GGAGCUGGGCACCCUGAGGC 20 508 myoC-748 + GCUGGAGAGGAAACCUCUGC 20 1010 myoC-863 + GCCUGGAUGGGUGGCCUUGC 20 1049 myoC-704 + GGAGGAGGCUUGGAAGACUC 20 1014 myoC-96 - GGGCCAGGACAGCUCAGCUC 20 501 myoC-116 + GUAGGCAGUCUCCAACUCUC 20 483 myoC-1019 - GUCU UUUCUUUCAUGUCUUC 20 1319 myoC-976 - GUGUUUCCUCAGAGGGAAAG 20 1276 myoC-715 + GGGCACGAUGGAGGCAGCAG 20 1018 myoC-98 - GGCCCCAGGAGACCCAGGAG 20 503 myoC-985 - GAGGUGGGGACUGCAGGGAG 20 1285 myoC-991 - GUGGGGACGCUGGGGCUGAG 20 1291 myoC-858 + GAAAGCUCUGCUGUGCUGAG 20 1048 myoC-716 + GGCACGAUGGAGGCAGCAGG 20 1016 myoC-701 + GCUGUGACUGAUGGAGGAGG 20 1011 myoC-102 - GGGAGCUGGGCACCCUGAGG 20 507 myoC-884 + GGGUGGGGCUGUGCACAGGG 20 1052 myoC-877 + GGUGGCCACGUGAGGCUGGG 20 1053 myoC-94 - GGCCUGCCUGGUG UGGGAUG 20 499 myoC-987 - GGUGGGGACUGCAGGGAGUG 20 1287 myoC-101 - GAGGGGCUGCAGAGGGAGCU 20 506 myoC-702 + GACUGAUGGAGGAGGAGGCU 20 1004
Table 9D provides exemplary targeting domains for knocking down the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 9D
Figure imgf000305_0001
myoC-262 - CCCCAGGAGACCCAGGA 17 648 myoC-912 - CCAAACAGACUUCUGGA 17 1239 myoC-916 - UCUGUCUUCCCCCAUGA 17 1252 myoC-1276 - AGAAGUCUAUUUCAUGA 17 1576 myoC-763 - UUUGUUAUCACUCUCUA 17 1170 myoC-299 + UGUCUCUCUGUAAGUUA 17 685 myoC-811 + CAGAAAUAGAAAGCAAC 17 1149 myoC-801 + UUCCUUUCUUUCAGCAC 17 1168 myoC-814 + A A A AC A ACC AG U G G C AC 17 1127 myoC-946 + UGGGUGGGGCUGUGCAC 17 1257 myoC-1374 + AAGAUAAAAAGGCUCAC 17 1674 myoC-1288 - UUCACGGAAGAAGUGAC 17 1588 myoC-901 - UG UGUGUGUGUAAAACC 17 1258 myoC-308 + CCCCCACAUCCCACACC 17 694 myoC-1372 + AAAACCCAU GCACACCC 17 1672 myoC-261 - CAGGCCCCAGGAGACCC 17 647 myoC-819 + CAGGACACCCAGGACCC 17 1151 myoC-820 + AGGACACCCAGGACCCC 17 1138 myoC-260 - CCAG G CU G CCAG G CCCC 17 646 myoC-292 + CCUGGGGCCUGGCAGCC 17 678 myoC-253 - CUGCCCAGAGCAGAGCC 17 639 myoC-1384 + AU UUCCUU UCUGGAGCC 17 1684 myoC-249 - UGUGGGAUGUGGGGGCC 17 635 myoC-291 + CUGGGUCUCCUGGGGCC 17 677 myoC-272 - AAAAUGAGAAUCUGGCC 17 658 myoC-810 + AAUUGUCAAUGAAUGCC 17 1129 myoC-259 - CCUUGGACCAGGCUGCC 17 645 myoC-925 + CUGUGCUGAGAGG UGCC 17 1245 myoC-956 + AG AACCUGCACUG UGCC 17 1228 myoC-1378 + CUGCAGUCCCCACCUCC 17 1678 myoC-287 + CCCUCUGCAGCCCCUCC 17 673 myoC-787 + CGGGCUUGGGGGCCUCC 17 1155 myoC-1379 + ACCUCCUGGAAUUCUCC 17 1679 myoC-900 - CAGCACACCAGUAGUCC 17 1238 myoC-307 + CCUGAGCUGAGCUGUCC 17 693 myoC-1278 - UCAGCUGUUAAAAUUCC 17 1578 myoC-311 + AGCAGCAGCUGGACAGC 17 697 myoC-823 + UGCAGGGCUCCCCCAGC 17 1165 myoC-286 + UGGU UUGGGUU UCCAGC 17 672 myoC-310 + AGGCCAGAAGCAGCAGC 17 696 myoC-267 - CACCCUGAGGCGGGAGC 17 653 myoC-309 + CACAU CCCACACCAGG C 17 695 myoC-941 + AGGUGGCCACGUGAGGC 17 1233 myoC-918 - CU UCCCCCAUGAAGGGC 17 1246 myoC-816 + CAGUGGCACGGGCUGGC 17 1152 myoC-1253 - CAGGAGGUGGGGACUGC 17 1553 myoC-898 - AGUGCCUGGCACAGUGC 17 1234 myoC-913 - UU UUCUAAGAAUCUUGC 17 1260 myoC-786 + UCGGGCUUGGGGGCCUC 17 1162 myoC-250 - CCAGGACAGCUCAGCUC 17 636 myoC-921 - AAACCUCUCUGGAGCUC 17 1223 myoC-300 + AUGGCCUGGCUCUGCUC 17 686 myoC-312 + UGGACAGCUGGCAUCUC 17 698 myoC-809 + AUU UUGUCUCUGGUGUC 17 1144 myoC-911 - AACUCCAAACAGACUUC 17 1225 myoC-243 - UGUCCAGCUGCUGCUUC 17 629 myoC-1289 - U UUUCUUUCAUGUCUUC 17 1589 myoC-1383 + CCUCUCCAUUUCCUUUC 17 1683 myoC-1246 - U UUCCUCAGAGGGAAAG 17 1546 myoC-938 + UUCAUGGGGGAAGACAG 17 1259 myoC-2657 - ACAGCAGAGCU UUCCAG 17 2613 myoC-792 + CACGAUGGAGGCAGCAG 17 1148 myoC-264 - CCCAGGAGGGGCUGCAG 17 650 myoC-251 - AAGGCCAAUGACCAGAG 17 637 myoC-263 - CCCAGGAGACCCAGGAG 17 649 myoC-1235 - CCAGAAAGGAAAUGGAG 17 1535 myoC-924 + AGCUCUGCUGUGCUGAG 17 1232 myoC-915 - CCCCACCCAGCCUCACG 17 1241 myoC-758 - AGCCCUGCAAGCACCCG 17 1136 myoC-273 - AUGAGAAUCUGGCCAGG 17 659 myoC-1249 - UCCAGGAGAAUUCCAGG 17 1549 myoC-793 + ACGAUGGAGGCAGCAGG 17 1131 myoC-939 + AUGGGGGAAGACAGAGG 17 1237 myoC-1250 - AGGAGAAUUCCAGGAGG 17 1550 myoC-282 + CUGACUUGUCUCGGAGG 17 668 myoC-797 + AGGGGGCGCUAGGGAGG 17 1141 myoC-266 - AGCUGGGCACCCUGAGG 17 652 myoC-950 + UGGGGCUGUGCACAGGG 17 1256 myoC-796 + AGCAGGGGGCGCUAGGG 17 1135 myoC-928 + AGAGGUGCCUGGAUGGG 17 1229 myoC-295 + CCAAGGUCAAUUGGUGG 17 681 myoC-248 - CCUGGUGUGGGAUGUGG 17 634 myoC-1275 - AUCUU UUCUCUGCUUGG 17 1575 myoC-246 - CUGCCUGGUGUGGGAUG 17 632 myoC-290 + CCCUCCUGGGUCUCCUG 17 676 myoC-1260 - AGGGAGUGGGGACGCUG 17 1560 myoC-1382 + AGGCCCCUU UCCCUCUG 17 1682 myoC-940 + ACAGAGGUGGCCACGUG 17 1226 myoC-945 + CCACGUGAGGCUGGGUG 17 1240 myoC-244 - UUCUGGCCUGCCUGGUG 17 630 myoC-3164 + AUUGCAGAGGCUUGGUG 17 2910 myoC-906 - UAUAGGAACUAU UAUUG 17 1248 myoC-784 + UGGAAGACUCGGGCUUG 17 1166 myoC-302 + UGGGCAGCUGGAUUCAU 17 688 myoC-927 + CUGAGAGGUGCCUGGAU 17 1243 myoC-1285 - UUAU UUAAUGGGAAUAU 17 1585 myoC-903 - AAACCAGGUGGAGAUAU 17 1222 myoC-908 - AACUAUUAUUGGGGUAU 17 1224 myoC-802 + UCCUUUCUUUCAGCACU 17 1161 myoC-780 + AGGAGGCUUGGAAGACU 17 1139 myoC-932 + AGAGGUUUAUAUAUACU 17 1230 myoC-1231 - CUGAGCUGGAGACUCCU 17 1531 myoC-288 + CCUCUGCAGCCCCUCCU 17 674 myoC-289 + CCCCUCCUGGGUCUCCU 17 675 myoC-760 - CAAGCACCCGGGGUCCU 17 1147 myoC-1286 - AAGCGAGCUCAUUUCCU 17 1586 myoC-753 - AGG UUUCCUCUCCAGCU 17 1142 myoC-920 - UAAACCUCUCUGGAGCU 17 1247 myoC-1259 - CAGGGAGUGGGGACGCU 17 1559 myoC-794 + AGGCAGCAGGGGGCGCU 17 1140 myoC-3165 + ACCUCAUUGCAGAGGCU 17 2911 myoC-779 + UGAUGGAGGAGGAGGCU 17 1163 myoC-1274 - U UUAUCUUU UCUCUGCU 17 1574 myoC-1377 + AACAACACUGAACAUCU 17 1677 myoC-301 + UGGCCUGGCUCUGCUCU 17 687 myoC-762 - UU UUGUUAUCACUCUCU 17 1171 myoC-1290 - U UUCUUUCAUGUCUUCU 17 1590 myoC-1256 - UGGGGACUGCAGGGAGU 17 1556 myoC-247 - UGCCUGGUGUGGGAUGU 17 633 myoC-283 + UCGGAGGAGGUUGCUGU 17 669 myoC-245 - UCUGGCCUGCCUGGUG U 17 631 myoC-905 - AUAUAGGAACUAUUAU U 17 1235 myoC-284 + UCUCCAACUCUCUGGUU 17 670 myoC-242 - CACGU UGCUGCAGCU UU 17 628 myoC-285 + CUCCAACUCUCUGGUUU 17 671 myoC-1103 + C A AG C AG AG A A A AG A U A A A A 20 1403 myoC-964 - UCCAGGCUCCAGAAAGGAAA 20 1264 myoC-996 - UGAAAGGCAGGAAGGUGAAA 20 1296 myoC-1105 + A A A AG GCUCACAGGAAGCAA 20 1405 myoC-693 - UAAACCCAGUGCUGAAAGAA 20 1113 myoC-963 - CU UGGCUCCAGGCUCCAGAA 20 1263 myoC-851 - CCUCUGUCUUCCCCCAUGAA 20 1200 myoC-833 - CAAUGAGUUUGCAGAGUGAA 20 1188 myoC-1100 + CCUAUAUUCCCAUUAAAUAA 20 1400 myoC-5407 + U A AC AG CC AG CC AG A AC AC A 20 5153 myoC-1115 + CUUUCUGGAGCCUGGAGCCA 20 1415 myoC-223 + U UGGUGGAGGAGGCUCUCCA 20 609 myoC-984 - UCCAGGAGGUGGGGACUGCA 20 1284 myoC-966 - CUCCAGAAAGGAAAUGGAGA 20 1266 myoC-187 - AGGCCCCAGGAGACCCAGGA 20 573 myoC-175 - CAGGACAGCUCAGCUCAGGA 20 561 myoC-860 + UGUGCUGAGAGGUGCCUGGA 20 1217 myoC-850 - ACCUCUGUCU UCCCCCAUGA 20 1175 myoC-193 - AG G A AG AG A AG A AG CG AC U A 20 579 myoC-687 - UGUUUUGUUAUCACUCUCUA 20 1122 myoC-734 + ACACAGAAAUAGAAAGCAAC 20 1080 myoC-892 + CCAGGCACUAUGCUAGGAAC 20 1196 myoC-724 + UAUUUCCU UUCUU UCAGCAC 20 1116 myoC-238 + U G G CCCCC AC A U CCC AC ACC 20 624 myoC-887 + CACGUACACACACUUACACC 20 1190 myoC-185 - UGCCAGGCCCCAGGAGACCC 20 571 myoC-743 + CUCAGGACACCCAGGACCCC 20 1107 myoC-218 + UCUCCUGGGGCCUGGCAGCC 20 604 myoC-178 - CAGCUGCCCAGAGCAGAGCC 20 564 myoC-174 - UGGUGUGGGAUGUGGGGGCC 20 560 myoC-217 + CUCCUGGGUCUCCUGGGGCC 20 603 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 581 myoC-733 + AUAAAUUGUCAAUGAAUGCC 20 1093 myoC-184 - UGACCU UGGACCAGGCUGCC 20 570 myoC-749 + CUGGAGAGGAAACCUCUGCC 20 1110 myoC-831 - CCAGUUCCUAGCAUAGUGCC 20 1198 myoC-695 - CCUGCUGCCUCCAUCGUGCC 20 1104 myoC-890 + UUGAGAACCUGCACUGUGCC 20 1221 myoC-1108 + UCCCUGCAGUCCCCACCUCC 20 1408 myoC-834 - AAUCAGCACACCAGUAGUCC 20 1174 myoC-237 + CUUCCUGAGCUGAGCUGUCC 20 623 myoC-1008 - AAGUCAGCUGUUAAAAUUCC 20 1308 myoC-240 + AGAAGCAGCAGCUGGACAGC 20 626 myoC-230 + CUGGCUCUGCUCUGGGCAGC 20 616 myoC-992 - UGGGGACGCUGGGGCUGAGC 20 1292 myoC-988 - ACUGCAGGGAGUGGGGACGC 20 1288 myoC-852 - UGUCU UCCCCCAUGAAGGGC 20 1216 myoC-5408 - UGCUGUCCUUGUGUUCUGGC 20 5154 myoC-983 - UUCCAGGAGGUGGGGACUGC 20 1283 myoC-832 - CAUAGUGCCUGGCACAGUGC 20 1194 myoC-847 - U UAUUUUCUAAGAAUCUUGC 20 1219 myoC-194 - A AG G C A AG A A A AU G AG A A U C 20 580 myoC-731 + U UUGCUCACCAUUUUGUCUC 20 1126 myoC-845 - AGAAACUCCAAACAGACUUC 20 1179 myoC-1113 + U UCCCUCUCCAUUUCCUUUC 20 1413 myoC-882 + CUGGGUGGGGCUGUGCACAG 20 1205 myoC-872 + CCCU UCAUGGGGGAAGACAG 20 1199 myoC-2111 - AGCACAGCAGAGCU U U CC AG 20 2233 myoC-188 - AGACCCAGGAGGGGCUGCAG 20 574 myoC-176 - AGGAAGGCCAAUGACCAGAG 20 562 myoC-747 + CAGGGCUCCCCCAGCUGGAG 20 1099 myoC-849 - CAG CCCCACCCAG CCU CACG 20 1193 myoC-883 + UGGGUGGGGCUGUGCACAGG 20 1215 myoC-836 - UGUGUGUGUGUAAAACCAGG 20 1218 myoC-186 - CAGGCCCCAGGAGACCCAGG 20 572 myoC-196 - AAAAUGAGAAUCUGGCCAGG 20 582 myoC-873 + U UCAUGGGGG AAG ACAGAGG 20 1220 myoC-862 + CUGAGAGGUGCCUGGAUGGG 20 1202 myoC-173 - CUGCCUGGUGUGGGAUGUGG 20 559 myoC-1005 - UUUAUCUUUUCUCUGCUUGG 20 1305 myoC-870 + UGGGGAGCCAGCCCUUCAUG 20 1213 myoC-189 - AGAGGGAGCUGGGCACCCUG 20 575 myoC-216 + AGCCCCUCCUGGGUCUCCUG 20 602 myoC-678 - AGAGGUUUCCUCUCCAGCUG 20 1085 myoC-990 - UGCAGGGAGUGGGGACGCUG 20 1290 myoC-1112 + UGGAGGCCCCUUUCCCUCUG 20 1412 myoC-874 + AAGACAGAGGUGGCCACGUG 20 1172 myoC-982 - CAGGAGAAUUCCAGGAGGUG 20 1282 myoC-879 + UGGCCACGUGAGGCUGGGUG 20 1212 myoC-171 - UGCUUCUGGCCUGCCUGGUG 20 557 myoC-172 - CCUGCCUGGUGUGGGAUGUG 20 558 myoC-231 + CUCUGGGCAGCUGGAUUCAU 20 617 myoC-869 + CUGGGGAGCCAGCCCUUCAU 20 1204 myoC-1015 - CCUUUAUUUAAUGGGAAUAU 20 1315 myoC-725 + AUUUCCUUUCUUUCAGCACU 20 1095 myoC-703 + AGGAGGAGGCUUGGAAGACU 20 1090 myoC-214 + CUCCCUCUGCAGCCCCUCCU 20 600 myoC-215 + CAGCCCCUCCUGGGUCUCCU 20 601 myoC-677 - CAGAGGUUUCCUCUCCAGCU 20 1097 myoC-989 - CUGCAGGGAGUGGGGACGCU 20 1289 myoC-717 + UGGAGGCAGCAGGGGGCGCU 20 1120 myoC-891 + ACUGUGCCAGGCACUAUGCU 20 1178 myoC-1004 - CUUUUUAUCUUUUCUCUGCU 20 1304 myoC-229 + ACAUGGCCUGGCUCUGCUCU 20 615 myoC-686 - UUGUUUUGUUAUCACUCUCU 20 1124 myoC-1020 - UCUUUUCUUUCAUGUCUUCU 20 1320 myoC-986 - AGGUGGGGACUGCAGGGAGU 20 1286 myoC-211 + AGUCUCCAACUCUCUGGUUU 20 597
Table 9E provides exemplary targeting domains for knocking down the MYOC gene selected according to the fifth tier parameters. The targeting domains bind within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 9E
Figure imgf000311_0001
myoC-1363 + GG AG AG ACACU UGCCCA 17 1663 myoC-1429 - UGGAGGUGAGUCUGCCA 17 1729 myoC-1488 + CACCCUACCAGGCUCCA 17 1788 myoC-1365 + CGAGUCUCCUGAUUCCA 17 1665 myoC-1439 - UUUAU UAAUGUAAAGCA 17 1739 myoC-1387 - AGUGACUGCUGACAGCA 17 1687 myoC-144 - GCAGCCAGGAGGUAGCA 17 539 myoC-1389 - GAGUGACCUGCAGCGCA 17 1689 myoC-5419 + AG G AG A A AG G G C AG G C A 17 5165 myoC-1405 - CUGGGUUCUAGGAGGCA 17 1705 myoC-1357 + AGAACACGAGAGCUGCA 17 1657 myoC-1474 + GCGUGGGGUGCUGGUCA 17 1774 myoC-1394 - AAAGACAGAUUCAU UCA 17 1694 myoC-1411 - G G G A AAA AA U CAG U U CA 17 1711 myoC-1294 - ACU UGGCUUAUGCAAGA 17 1594 myoC-1393 - AGGAGAAGAAAAAGAGA 17 1693 myoC-3167 - CCACCAGG CU CCAG AG A 17 2913 myoC-274 - AGGUAGCAAGGCUGAGA 17 660 myoC-1311 - GAGGGGGGAUGUUGAGA 17 1611 myoC-1444 + UGUUAAAU UUAGUUAGA 17 1744 myoC-1326 - GGUGGAGGGGGACAGGA 17 1626 myoC-1362 + AGACUAUGGCCCAGGGA 17 1662 myoC-1345 + U UGUCUAUGCUUAGGGA 17 1645 myoC-1313 - GGGAUG UUGAGAGGGGA 17 1613 myoC-5420 + GUGAAAACUGACAUGGA 17 5166 myoC-1322 - GCCACAGGGGAGGUGGA 17 1622 myoC-1353 + UGAUCAGUGAGGACUGA 17 1653 myoC-2616 - UUUAAAGCUAGGGGUGA 17 2581 myoC-1306 - CCUGUGAUUCUCUGUGA 17 1606 myoC-5421 + UUACUAGUAAUACU UGA 17 5167 myoC-1462 + A A A A AG AGUUCCUAAUA 17 1762 myoC-5422 - GAGUUCAGCAGGUGAUA 17 5168 myoC-1359 + UAUAGCAGAGAAGACUA 17 1659 myoC-271 - AAGAGAAGAAGCGACUA 17 657 myoC-5423 - CAGU UGUUUUAAAGCUA 17 5169 myoC-5424 + UAUUUCUCCUUUUGCUA 17 5170 myoC-1484 - CUCCCUGGAGCCUGGUA 17 1784 myoC-5425 - ACAAGACAGAUGAAUUA 17 5171 myoC-1344 + GCCAU UGUCUAUGCUUA 17 1644 myoC-1442 + UUACCACUU UGAGU UUA 17 1742 myoC-1336 - GCCUGGCAU UCAAAAAC 17 1636 myoC-1461 + U UCCUGUU A A A AG A A AC 17 1761 myoC-1333 - AGAAUGCAGAGACUAAC 17 1633 myoC-1421 - AUCCCGU UUCUU UUAAC 17 1721 myoC-279 + CUCGGGUCUGGGGACAC 17 665 myoC-1366 + UAAGCCAAGUCCACCAC 17 1666 myoC-1398 - CAGUGGGAAUUGACCAC 17 1698 myoC-1316 - UGGAGCAGCUGAGCCAC 17 1616 myoC-5426 + G G U A A U G AC A A A A U C AC 17 5172 myoC-1355 + CCCUCACAGAGAAUCAC 17 1655 myoC-1446 + UCCUCAUUCAAAUUCAC 17 1746 myoC-5427 - AGGAGAAAUAAAAGGAC 17 5173 myoC-1325 - GGGAGGUGGAGGGGGAC 17 1625 myoC-5428 - UCGUAGUGACCUGCUAC 17 5174 myoC-148 - GCUCGGGCUGUGCCACC 17 490 myoC-5429 + UGCAGACACAUCUCACC 17 5175 myoC-5430 - GGAGAAAUAAAAGGACC 17 5176 myoC-1486 + AAGGACAGCACCCUACC 17 1786 myoC-1465 + CCUGCCUCCUAGAACCC 17 1765 myoC-1360 + AGAGAAGACUAUGGCCC 17 1660 myoC-1450 + AUAU UUCCAAACUGCCC 17 1750 myoC-1481 - UAUAGGAAUGCUCUCCC 17 1781 myoC-1303 - AAGUGUCUCUCCU UCCC 17 1603 myoC-142 - G U U G G A A AG C AG C AG CC 17 537 myoC-1482 - AUGCUCUCCCUGGAGCC 17 1782 myoC-3169 + UUACCUUCUCUGGAGCC 17 2915 myoC-5431 + GGGCAGGCAGGGAGGCC 17 5177 myoC-272 - AAAAUGAGAAUCUGGCC 17 658 myoC-1340 + CCCAGUUU UUGAAUGCC 17 1640 myoC-1428 - CUGGAGGUGAGUCUGCC 17 1728 myoC-1335 - UGGUGGUAGCUU UUGCC 17 1635 myoC-1400 - UAUAGUCCACGUGAUCC 17 1700 myoC-1330 - UGAUCACGUCAGACUCC 17 1630 myoC-151 + GCUGCU UUCCAACCUCC 17 543 myoC-280 + UCAGCCUUGCUACCUCC 17 666 myoC-5432 - CCUGCUACAGGCGCUCC 17 5178 myoC-1487 + GCACCCUACCAGGCUCC 17 1787 myoC-1351 + AU UGUGGCUCUCGGUCC 17 1651 myoC-1438 - GUUUAUUAAUGUAAAGC 17 1738 myoC-1328 - G G A AG G C AG G C AG A AG C 17 1628 myoC-1498 + UAAAAACAAGAUCCAGC 17 1798 myoC-5433 - GGGACUCUGAGUUCAGC 17 5179 myoC-1315 - GGGGAAGGAGGCAGAGC 17 1615 myoC-5434 + CCUGGAGCGCCUGUAGC 17 5180 myoC-1388 - GGAGUGACCUGCAGCGC 17 1688 myoC-1327 - GAGGGGGACAGGAAGGC 17 1627 myoC-5435 + UAGGAGAAAGGGCAGGC 17 5181 myoC-1404 - CCUGGGUUCUAGGAGGC 17 1704 myoC-5436 + UCUCUAGGAGAAAGGGC 17 5182 myoC-1475 - GAAAUUAGACCUCCUGC 17 1775 myoC-1468 + CUCCUCCCCUGCGCUGC 17 1768 myoC-1472 + UGAGCUGCGUGGGGUGC 17 1772 myoC-1464 + AUAUAGUAUUAGAAAUC 17 1764 myoC-1494 + ACCUCAUUGGUGAAAUC 17 1794 myoC-140 - GCAAGAAAAUGAGAAUC 17 535 myoC-1296 - UCGAAAACCUUGGAAUC 17 1596 myoC-1426 - ACUGUGUUUCUCCACUC 17 1726 myoC-147 - GACCCGAGACACUGCUC 17 489 myoC-1339 + GCAU UUUCCACUUGCUC 17 1639 myoC-5437 + A A A AG UUUAACAAUCUC 17 5183 myoC-1492 + UUUCAGUCU UGCAUCUC 17 1792 myoC-5438 + AUCUAAAUGAAGCUCUC 17 5184 myoC-277 + AGCCCGAGCAGUGUCUC 17 663 myoC-3170 + UGCAUUCUUACCUUCUC 17 2916 myoC-1414 - U CAG U U C A AG G G A AG U C 17 1714 myoC-149 + GAGCAGUGUCUCGGGUC 17 491 myoC-1473 + UGCGUGGGGUGCUGGUC 17 1773 myoC-1331 - G AG AGCCACAAUGCU UC 17 1631 myoC-1425 - GUAAAUGUCUCAAGUUC 17 1725 myoC-1485 - GUGCUGUCCUUGUGUUC 17 1785 myoC-1447 + CAAAUUCACAGGCUUUC 17 1747 myoC-1298 - AGACUCGGUUUUCUUUC 17 1598 myoC-1441 - GAGCCAUAAACUCAAAG 17 1741 myoC-1338 - AACUGGGCCAGAGCAAG 17 1638 myoC-1433 - GCAAUCAUUAUUUCAAG 17 1733 myoC-146 - GUAGCAAGGCUGAGAAG 17 541 myoC-1489 + G AGCAU UCCU AU AG AAG 17 1789 myoC-1318 - GAGCAGCUGAGCCACAG 17 1618 myoC-1390 - AGUGACCUGCAGCGCAG 17 1690 myoC-1396 - GAUUCAUUCAAGGGCAG 17 1696 myoC-1392 - GAGGAGAAGAAAAAGAG 17 1692 myoC-1451 + CAGACUCACCUCCAGAG 17 1751 myoC-3171 - AAGGUAAGAAUGCAGAG 17 2917 myoC-1312 - AGGGGGGAUGUUGAGAG 17 1612 myoC-5439 + UGAAAACUGACAUGGAG 17 5185 myoC-1323 - CCACAGGGGAGGUGGAG 17 1623 myoC-2617 - U UAAAGCUAGGGGUGAG 17 2582 myoC-1307 - CUGUGAUUCUCUGUGAG 17 1607 myoC-1310 - UGAGGGGGGAUGUUGAG 17 1610 myoC-5440 - AGUUGUUU UAAAGCUAG 17 5186 myoC-5441 - AGCU UCAUUUAGAUUAG 17 5187 myoC-1478 - AGUAAGAACUGAUUUAG 17 1778 myoC-1466 + UAGAACCCAGGAUCACG 17 1766 myoC-1301 - GGU UGGCUGUGCGACCG 17 1601 myoC-1469 + GUCACUGCUGAGCUGCG 17 1769 myoC-1445 + UAAAU U U AG U U AG AAGG 17 1745 myoC-1314 - AUGUUGAGAGGGGAAGG 17 1614 myoC-143 - GGAAAGCAGCAGCCAGG 17 538 myoC-273 - AUGAGAAUCUGGCCAGG 17 659 myoC-1499 + AAACAAGAUCCAGCAGG 17 1799 myoC-1320 - CUGAGCCACAGGGGAGG 17 1620 myoC-1324 - CACAGGGGAGGUGGAGG 17 1624 myoC-2618 - UAAAGCUAGGGGUGAGG 17 2583 myoC-1308 - UGUGAUUCUCUGUGAGG 17 1608 myoC-1403 - UGAUCCUGGGUUCUAGG 17 1703 myoC-5442 + AG A A AG G G C AG G C AG G G 17 5188 myoC-2619 - AAAGCUAGGGGUGAGGG 17 2584 myoC-1309 - GUGAU UCUCUGUGAGGG 17 1609 myoC-1319 - CAGCUGAGCCACAGGGG 17 1619 myoC-1391 - GACCUGCAGCGCAGGGG 17 1691 myoC-3172 - UAAGAAUGCAGAGUGGG 17 2918 myoC-1410 - CAGGGCUAUAU UGUGGG 17 1710 myoC-5443 + UGUGAAAACUGACAUGG 17 5189 myoC-1334 - AUGCAGAGACUAACUGG 17 1634 myoC-3173 + CCUUCUCUGGAGCCUGG 17 2919 myoC-1427 - GUGUUUCUCCACUCUGG 17 1727 myoC-3174 - GUAAGAAUGCAGAGUGG 17 2920 myoC-1321 - AGCCACAGGGGAGGUGG 17 1621 myoC-1292 - ACUACUCAGCCCUGUGG 17 1592 myoC-1409 - GCAGGGCUAUAUUGUGG 17 1709 myoC-1346 + CUUAGGGAAGGAAAAUG 17 1646 myoC-1476 - CCCAG AU U U CACCAAU G 17 1776 myoC-1440 - GCCUGUGAAUUUGAAUG 17 1740 myoC-1416 - UCACAAGGUAGUAACUG 17 1716 myoC-1354 + CCCCUCCACCUCCCCUG 17 1654 myoC-1291 - GCAACUACUCAGCCCUG 17 1591 myoC-1467 + GUGGACUAUAAUCCCUG 17 1767 myoC-1496 + CUCAUUGGUGAAAUCUG 17 1796 myoC-1418 - GGAACUCUUU UUCUCUG 17 1718 myoC-150 + GCAGUGUCUCGGGUCUG 17 542 myoC-1352 + GUCUGACGUGAUCAGUG 17 1652 myoC-3175 - GGUAAGAAUGCAGAGUG 17 2921 myoC-1471 + CACUGCUGAGCUGCGUG 17 1771 myoC-2615 - U UUUAAAGCUAGGGGUG 17 2580 myoC-1305 - CCCUGUGAUUCUCUGUG 17 1605 myoC-1408 - GGCAGGGCUAUAUUGUG 17 1708 myoC-1349 + GCU UUCCUGAAGCAUUG 17 1649 myoC-1406 - GAGGCAGGGCUAUAUUG 17 1706 myoC-1454 + UUGAGACAUUUACAAAU 17 1754 myoC-1479 - GAGGCUAACAUUGACAU 17 1779 myoC-1299 - CUUUCUGGUUCUGCCAU 17 1599 myoC-1493 + CAUGCCAAGAACCUCAU 17 1793 myoC-1423 - CUUGCUGACUAUAUGAU 17 1723 myoC-1452 + U UCUAUUCUUAUUUGAU 17 1752 myoC-1480 - AAAUCUGCCGCUUCUAU 17 1780 myoC-1500 + AUGUCUGUGAU UUCUAU 17 1800 myoC-1342 + GCAU UCUUU UUGGUUAU 17 1642 myoC-1435 - AG UUUUGGUAUAUUUAU 17 1735 myoC-1337 - CCUGGCAUUCAAAAACU 17 1637 myoC-1297 - CU UGG AAUCAGG AG ACU 17 1597 myoC-1293 - CAGCCCUGUGGUGGACU 17 1593 myoC-1295 - AAGACGGUCGAAAACCU 17 1595 myoC-1457 + U A U AG U C AG C A AG ACC U 17 1757 myoC-1304 - AGUGUCUCUCCUUCCCU 17 1604 myoC-1422 - CAAACAGAUUCAAGCCU 17 1722 myoC-1401 - AUAGUCCACGUGAUCCU 17 1701 myoC-2612 - ACAGU UGUUUUAAAGCU 17 2577 myoC-1329 - G A AG G C AG G C AG A AG C U 17 1629 myoC-275 - AGACCCGAGACACUGCU 17 661 myoC-1495 + CCUCAUUGGUGAAAUCU 17 1795 myoC-1350 + UGAAGCAUUGUGGCUCU 17 1650 myoC-5444 + CUAGCUGUGCAGUCUCU 17 5190 myoC-278 + AGCAGUGUCUCGGGUCU 17 664 myoC-276 + CAGCCCGAGCAGUGUCU 17 662 myoC-1290 - UU UCUUUCAUGUCUUCU 17 1590 myoC-1477 - UUCACCAAUGAGGU UCU 17 1777 myoC-1402 - ACGUGAUCCUGGGUUCU 17 1702 myoC-1413 - AUCAGU UCAAGGGAAG U 17 1713 myoC-1397 - AUUCAUUCAAGGGCAGU 17 1697 myoC-3177 - AGGUAAGAAUGCAGAGU 17 2923 myoC-1302 - GUUGGCUGUGCGACCGU 17 1602 myoC-1470 + UCACUGCUGAGCUGCGU 17 1770 myoC-141 - GAAUCUGGCCAGGAGGU 17 536 myoC-1483 - UCUCCCUGGAGCCUGGU 17 1783 myoC-1300 - CUGGUUCUGCCAUUGGU 17 1600 myoC-1448 + CAGGCUUUCUGGACUGU 17 1748 myoC-1347 + AAGGAAAAUGUGGCUGU 17 1647 myoC-1407 - AGGCAGGGCUAUAU UGU 17 1707 myoC-1431 - AGUAUUGACACUGUUGU 17 1731 myoC-1417 - CU UAGUUUCUCCUUAUU 17 1717 myoC-1424 - AUGAGACUAGUACCCUU 17 1724 myoC-1343 + UGCCAUUGUCUAUGCUU 17 1643 myoC-1490 + AAACAACUGUGUAUCUU 17 1790 myoC-1459 + UGUUUGGCU UUACUCU U 17 1759 myoC-1436 - U UUUUGUUU UUUCUCUU 17 1736 myoC-1430 - AGUCUGCCAGGGCAGUU 17 1730 myoC-1348 + AGGAAAAUGUGGCUGUU 17 1648 myoC-1458 + CUAGGCUUGAAUCUGUU 17 1758 myoC-1491 + AACAACUGUGUAUCUU U 17 1791 myoC-1437 - U UUUGUUUU UUCUCUUU 17 1737 myoC-1434 - GU UACU UCUGACAGUU U 17 1734 myoC-1341 + AGUCUCUGCAUUCUUU U 17 1641 myoC-5445 + UCUGAGCAAAGGUU CAAAA A 20 5191 myoC-5446 + AAAAGG AU AG U U U U U CAAAA 20 5192 myoC-1183 + GAACU U G AG ACAU UUACAAA 20 1483 myoC-1186 + UUUGUUUACAGCUGACCAAA 20 1486 myoC-1179 + GAGAAAAAACAAAAAGCAAA 20 1479 myoC-5447 - U U U U C AC AG U CC A U AG C A A A 20 5193 myoC-5448 + AAGGUCAU UUUAACAUCAAA 20 5194 myoC-5449 + A A A A AG GAUAGUUUU U C A A A 20 5195 myoC-1190 + UUUCUUCCUGUUAAAAGAAA 20 1490 myoC-5450 + UGUGCAGUCUCUAGGAGAAA 20 5196 myoC-5451 - AUAGCAAAAGGAGAAAUAAA 20 5197 myoC-1150 - CUGUGGAGUUAGCAGCACAA 20 1450 myoC-1062 - CCUUCCCUAAGCAUAGACAA 20 1362 myoC-1227 + AUAUAAAAUAUAGAUUACAA 20 1527 myoC-1094 + ACGGUCGCACAGCCAACCAA 20 1394 myoC-1185 + GUU UGU UUACAGCUGACCAA 20 1485 myoC-5452 + AC AAA U A AC A A U C U G AG CA A 20 5198 myoC-1173 + GU UUAUGGCUCUAUUCGCAA 20 1473 myoC-1088 + ACAGAACACGAGAGCUGCAA 20 1388 myoC-1162 - A AC A AC A U A A AG U U G C U C A A 20 1462 myoC-1125 - AGAAAGACAGAUUCAU UCAA 20 1425 myoC-1142 - G G G G G A A A A A A U C AG U U C A A 20 1442 myoC-5453 + CUGUGCAGUCUCUAGGAGAA 20 5199 myoC-110 - GGAGGUAGCAAGGCUGAGAA 20 513 myoC-1193 + CAGAAUUACUCAGCU UGUAA 20 1493 myoC-1097 + CA U A AG CC A AG U CC ACC AC A 20 1397 myoC-1129 - GGCAGUGGGAAUUGACCACA 20 1429 myoC-1047 - GCUGGAGCAGCUGAGCCACA 20 1347 myoC-1149 - UCUGUGGAGU UAGCAGCACA 20 1449 myoC-1086 + CCCCCUCACAGAGAAUCACA 20 1386 myoC-1145 - GUAAU UCUGAGCAAGUCACA 20 1445 myoC-5454 + AUGGACUGUGAAAACUGACA 20 5200 myoC-1091 + GCAGAGAAGACUAUGGCCCA 20 1391 myoC-1093 + G AAGG AG AG ACACU UGCCCA 20 1393 myoC-1159 - CUCUGGAGGUGAGUCUGCCA 20 1459 myoC-1218 + CAGCACCCUACCAGGCUCCA 20 1518 myoC-1095 + AACCGAGUCUCCUGAUUCCA 20 1395 myoC-1169 - GGGU UUAUUAAUGUAAAGCA 20 1469 myoC-1117 - AGCAGUGACUGCUGACAGCA 20 1417 myoC-109 - GCAGCAGCCAGGAGGUAGCA 20 512 myoC-1119 - ACGGAGUGACCUGCAGCGCA 20 1419 myoC-5455 + UCUAGGAGAAAGGGCAGGCA 20 5201 myoC-1135 - AUCCUGGGUUCUAGGAGGCA 20 1435 myoC-1087 + CACAGAACACGAGAGCUGCA 20 1387 myoC-1204 + GCUGCGUGGGGUGCUGGUCA 20 1504 myoC-1124 - A AG A A AG AC AG A U U C A U U C A 20 1424 myoC-1141 - GGGGGGAAAAAAUCAG UUCA 20 1441 myoC-1024 - UGGACUUGGCUUAUGCAAGA 20 1324 myoC-1123 - GGGAGGAGAAGAAAAAGAGA 20 1423 myoC-3181 - GUGCCACCAGGCUCCAGAGA 20 2927 myoC-198 - AGGAGGUAGCAAGGCUGAGA 20 584 myoC-1041 - UGUGAGGGGGGAUGUUGAGA 20 1341 myoC-1174 + AAAUGUUAAAU UUAGUUAGA 20 1474 myoC-1056 - GGAGGUGGAGGGGGACAGGA 20 1356 myoC-1092 + AGAAGACUAUGGCCCAGGGA 20 1392 myoC-1075 + CCAUUGUCUAUGCUUAGGGA 20 1375 myoC-1043 - GGGGGGAUGUUGAGAGGGGA 20 1343 myoC-5456 + ACUG UGAAAACUGACAUGGA 20 5202 myoC-1052 - UGAGCCACAGGGGAGGUGGA 20 1352 myoC-1083 + ACGUGAUCAGUGAGGACUGA 20 1383 myoC-2070 - UGU UUUAAAGCUAGGGGUGA 20 2201 myoC-1036 - U UCCCUGUGAUUCUCUGUGA 20 1336 myoC-5457 + AAAUUACUAGUAAUACU UGA 20 5203 myoC-1192 + G AG AAAAAG AG UUCCUAAUA 20 1492 myoC-5458 - UCUGAGUUCAGCAGGUGAUA 20 5204 myoC-1089 + CU UUAUAGCAGAGAAGACUA 20 1389 myoC-193 - AGGAAGAGAAGAAGCGACUA 20 579 myoC-5459 - ACACAGUUGUUUUAAAGCUA 20 5205 myoC-5460 + U UUUAUU UCUCCUU UUGCUA 20 5206 myoC-1214 - GCUCUCCCUGGAGCCUGGUA 20 1514 myoC-5461 - AGCACAAGACAGAUGAAUUA 20 5207 myoC-1074 + AAUGCCAUUGUCUAUGCUUA 20 1374 myoC-1172 + UUAU UACCACUUUGAGUUUA 20 1472 myoC-1066 - U UUGCCUGGCAUUCAAAAAC 20 1366 myoC-1191 + UUCUUCCUGUUAAAAGAAAC 20 1491 myoC-1063 - AAAAGAAUGCAGAGACUAAC 20 1363 myoC-1151 - GCAAUCCCGUUUCU UUUAAC 20 1451 myoC-206 + UGUCUCGGGUCUGGGGACAC 20 592 myoC-1096 + G CAU A AG CCAAG U CCACCAC 20 1396 myoC-1128 - GGGCAGUGGGAAUUGACCAC 20 1428 myoC-1046 - AGCUGGAGCAGCUGAGCCAC 20 1346 myoC-5462 + AUUGGUAAUGACAAAAUCAC 20 5208 myoC-1085 + CCCCCCUCACAGAGAAUCAC 20 1385 myoC-1176 + U UUUCCUCAUUCAAAUUCAC 20 1476 myoC-5463 - AAAAGGAGAAAUAAAAGGAC 20 5209 myoC-1055 - CAGGGGAGGUGGAGGGGGAC 20 1355 myoC-5464 - GGCUCGUAGUGACCUGCUAC 20 5210 myoC-201 - ACUGCUCGGGCUGUGCCACC 20 587 myoC-5465 + AUAUGCAGACACAUCUCACC 20 5211 myoC-5466 - A A AG G AG AAA U A A A AG G ACC 20 5212 myoC-1216 + CACAAGGACAGCACCCUACC 20 1516 myoC-1195 + AGCCCUGCCUCCUAGAACCC 20 1495 myoC-1090 + AGCAGAGAAGACUAUGGCCC 20 1390 myoC-1180 + UAAAUAUUUCCAAACUGCCC 20 1480 myoC-1211 - UUCUAUAGGAAUGCUCUCCC 20 1511 myoC-1033 - GGCAAGUGUCUCUCCUUCCC 20 1333 myoC-107 - GAGGUUGGAAAGCAGCAGCC 20 511 myoC-1212 - GGAAUGCUCUCCCUGGAGCC 20 1512 myoC-3183 + U UCUUACCUUCUCUGGAGCC 20 2929 myoC-5467 + AAAGGGCAGGCAGGGAGGCC 20 5213 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 581 myoC-1070 + UGGCCCAGU UUUUGAAUGCC 20 1370 myoC-1158 - ACUCUGGAGGUGAGUCUGCC 20 1458 myoC-1065 - AACUGGUGGUAGCU UU UGCC 20 1365 myoC-1130 - GAUUAUAGUCCACGUGAUCC 20 1430 myoC-1060 - CACUGAUCACGUCAGACUCC 20 1360 myoC-113 + GCUGCUGCUU UCCAACCUCC 20 515 myoC-207 + UUCUCAGCCUUGCUACCUCC 20 593 myoC-5468 - UGACCUGCUACAGGCGCUCC 20 5214 myoC-1217 + ACAGCACCCUACCAGGCUCC 20 1517 myoC-1081 + AGCAU UGUGGCUCUCGGUCC 20 1381 myoC-1168 - UGGGUUUAU UAAUGUAAAGC 20 1468 myoC-1058 - ACAGGAAGGCAGGCAGAAGC 20 1358 myoC-1228 + U G U U A A A A AC A AG A U CC AG C 20 1528 myoC-5469 - GGGGGGACUCUGAGUUCAGC 20 5215 myoC-1045 - AGAGGGGAAGGAGGCAGAGC 20 1345 myoC-5470 + AGGCCUGGAGCGCCUGUAGC 20 5216 myoC-1118 - CACGGAGUGACCUGCAGCGC 20 1418 myoC-1057 - GUGGAGGGGGACAGGAAGGC 20 1357 myoC-5471 + CUCUAGGAGAAAGGGCAGGC 20 5217 myoC-1134 - GAUCCUGGGU UCUAGGAGGC 20 1434 myoC-5472 + CAGUCUCUAGGAGAAAGGGC 20 5218 myoC-1205 - UUUGAAAU UAGACCUCCUGC 20 1505 myoC-1198 + CUUCUCCUCCCCUGCGCUGC 20 1498 myoC-1202 + UGCUGAGCUGCGUGGGGUGC 20 1502 myoC-1194 + AAAAUAUAGUAUUAGAAAUC 20 1494 myoC-1224 + AGAACCUCAU UGGUGAAAUC 20 1524 myoC-194 - A AG G C A AG A A A AU G AG A A U C 20 580 myoC-1026 - CGGUCGAAAACCU UGGAAUC 20 1326 myoC-1156 - CAAACUGUGUUUCUCCACUC 20 1456 myoC-200 - CCAGACCCGAGACACUGCUC 20 586 myoC-1069 + CUGGCAUUU UCCACUUGCUC 20 1369 myoC-5473 + GUGAAAAGUUUAACAAUCUC 20 5219 myoC-1222 + UAAU UUCAGUCUUGCAUCUC 20 1522 myoC-5474 + CUAAUCUAAAUGAAGCUCUC 20 5220 myoC-202 + CACAG CCCG AG C AG U G U CU C 20 588 myoC-3184 + CUCUGCAU UCUUACCUUCUC 20 2930 myoC-1144 - A A A U C AG U U C A AG G G A AG U C 20 1444 myoC-203 + CCCGAGCAGUGUCUCGGGUC 20 589 myoC-1203 + AGCUGCGUGGGG UGCUGGUC 20 1503 myoC-1061 - ACCGAGAGCCACAAUGCUUC 20 1361 myoC-1155 - UUUGUAAAUGUCUCAAGUUC 20 1455 myoC-1215 - AGGGUGCUGUCCUUGUGUUC 20 1515 myoC-1177 + AUUCAAAUUCACAGGCU UUC 20 1477 myoC-1028 - AGGAGACUCGGUUU UCUUUC 20 1328 myoC-1171 - AUAGAGCCAUAAACUCAAAG 20 1471 myoC-1068 - AAAAACUGGGCCAGAGCAAG 20 1368 myoC-1163 - AAGGCAAUCAUUAUUUCAAG 20 1463 myoC-111 - GAGGUAGCAAGGCUGAGAAG 20 514 myoC-1219 + GGAGAGCAUUCCUAUAGAAG 20 1519 myoC-1048 - CUGGAGCAGCUGAGCCACAG 20 1348 myoC-1120 - CGG AG UG ACCUGCAGCGCAG 20 1420 myoC-1126 - ACAGAUUCAUUCAAGGGCAG 20 1426 myoC-1122 - GGGGAGGAGAAG A A A A AG AG 20 1422 myoC-1181 + UGGCAGACUCACCUCCAGAG 20 1481 myoC-3185 - GAGAAGGUAAGAAUGCAGAG 20 2931 myoC-1042 - GUGAGGGGGGAUGUUGAGAG 20 1342 myoC-5475 + CUGUGAAAACUGACAUGGAG 20 5221 myoC-1053 - GAGCCACAGGGGAGGUGGAG 20 1353 myoC-2071 - GU UUUAAAGCUAGGGGUGAG 20 2202 myoC-1037 - UCCCUGUGAUUCUCUGUGAG 20 1337 myoC-1040 - CUGUGAGGGGGGAUGU UGAG 20 1340 myoC-5476 - CACAGUUGUUU UAAAGCUAG 20 5222 myoC-5477 - GAGAGCU UCAU UUAGAUUAG 20 5223 myoC-1208 - CAGAGUAAGAACUGAUU UAG 20 1508 myoC-1196 + UCCUAGAACCCAGGAUCACG 20 1496 myoC-1031 - AUUGGUUGGCUG UGCGACCG 20 1331 myoC-1199 + GCAG UCACUGCUGAGCUGCG 20 1499 myoC-1175 + UGU UAAAU UUAGUUAGAAGG 20 1475 myoC-1044 - GGGAUGUUGAGAGGGGAAGG 20 1344 myoC-108 - G U U G G A AAG CAG CAG CC AG G 20 480 myoC-196 - AAAAUGAGAAUCUGGCCAGG 20 582 myoC-1229 + U A A A A AC AAG AU CC AG C AG G 20 1529 myoC-1050 - CAGCUGAGCCACAGGGGAGG 20 1350 myoC-1054 - AGCCACAGGGGAGGUGGAGG 20 1354 myoC-2072 - UUUUAAAGCUAGGGGUGAGG 20 2203 myoC-1038 - CCCUGUGAU UCUCUGUGAGG 20 1338 myoC-1133 - ACGUGAUCCUGGGUUCUAGG 20 1433 myoC-5478 + AGGAGAAAGGGCAGGCAGGG 20 5224 myoC-2073 - UUUAAAGCUAGGGGUGAGGG 20 2204 myoC-1039 - CCUGUGAUUCUCUGUGAGGG 20 1339 myoC-1049 - GAGCAGCUGAGCCACAGGGG 20 1349 myoC-1121 - AG UG ACCUGCAGCGCAGGGG 20 1421 myoC-3186 - AGGUAAGAAUGCAGAGUGGG 20 2932 myoC-1140 - AGGCAGGGCUAUAUUG UGGG 20 1440 myoC-5479 + GACUGUGAAAACUGACAUGG 20 5225 myoC-1064 - AGAAUGCAGAGACUAACUGG 20 1364 myoC-3187 + UUACCUUCUCUGGAGCCUGG 20 2933 myoC-1157 - ACUGUGUUUCUCCACUCUGG 20 1457 myoC-3188 - AAGGUAAGAAUGCAGAGUGG 20 2934 myoC-1051 - CUGAGCCACAGGGGAGGUGG 20 1351 myoC-1022 - GCAACUACUCAGCCCUG UGG 20 1322 myoC-1139 - GAGGCAGGGCUAUAUUGUGG 20 1439 myoC-1076 + AUGCUUAGGGAAGGAAAAUG 20 1376 myoC-1206 - U UCCCCAGAUUUCACCAAUG 20 1506 myoC-1170 - AAAGCCUGUGAAUUUGAAUG 20 1470 myoC-1146 - AAGUCACAAGGUAGUAACUG 20 1446 myoC-1084 + GUCCCCCUCCACCUCCCCUG 20 1384 myoC-1021 - UGGGCAACUACUCAGCCCUG 20 1321 myoC-1197 + CACGUGGACUAUAAUCCCUG 20 1497 myoC-1226 + AACCUCAUUGGUGAAAUCUG 20 1526 myoC-1148 - UUAGGAACUCUUU UUCUCUG 20 1448 myoC-205 + CGAGCAGUGUCUCGGGUCUG 20 591 myoC-1082 + GGAGUCUGACGUGAUCAGUG 20 1382 myoC-3189 - GAAGGUAAGAAUGCAGAGUG 20 2935 myoC-1201 + AGUCACUGCUGAGCUGCGUG 20 1501 myoC-2069 - UUGUUU UAAAGCUAGGGGUG 20 2200 myoC-1035 - CUUCCCUGUGAUUCUCUGUG 20 1335 myoC-1138 - GGAGGCAGGGCUAUAU UGUG 20 1438 myoC-1079 + UGAGCUUUCCUGAAGCAUUG 20 1379 myoC-1136 - UAGGAGGCAGGGCUAUAUUG 20 1436 myoC-1184 + AACUUGAGACAUUUACAAAU 20 1484 myoC-1209 - UUAGAGGCUAACAUUGACAU 20 1509 myoC-1029 - U UUCUU UCUGGUUCUGCCAU 20 1329 myoC-1223 + GUGCAUGCCAAGAACCUCAU 20 1523 myoC-1153 - GGUCUUGCUGACUAUAUGAU 20 1453 myoC-1182 + AGAUUCUAUUCUUAUU UGAU 20 1482 myoC-1210 - GGGAAAUCUGCCGCUUCUAU 20 1510 myoC-1230 + AAAAUGUCUGUGAU UUCUAU 20 1530 myoC-1072 + UCUGCAUUCUUUU UGGUUAU 20 1372 myoC-1165 - GACAGUUUUGGUAUAUU UAU 20 1465 myoC-1067 - U UGCCUGGCAU UCAAAAACU 20 1367 myoC-1027 - AACCU UGG AAUCAGG AG ACU 20 1327 myoC-1023 - ACUCAGCCCUGUGGUGGACU 20 1323 myoC-1025 - UGCAAGACGGUCGAAAACCU 20 1325 myoC-1187 + UCAUAUAGUCAGCAAGACCU 20 1487 myoC-1034 - GCAAGUG UCUCUCCU UCCCU 20 1334 myoC-1152 - AGCCAAACAGAUUCAAGCCU 20 1452 myoC-1131 - AU UAUAGUCCACGUGAUCCU 20 1431 myoC-2066 - UACACAGUUGUUU UAAAGCU 20 2197 myoC-1059 - C AG G A AG G C AG G C AG A AG C U 20 1359 myoC-199 - CCCAGACCCGAGACACUGCU 20 585 myoC-1225 + GAACCUCAUUGGUGAAAUCU 20 1525 myoC-1080 + UCCUGAAGCAUUGUGGCUCU 20 1380 myoC-5480 + GUGCUAGCUGUGCAGUCUCU 20 5226 myoC-204 + CCGAGCAGUGUCUCGGGUCU 20 590 myoC-112 + GCACAGCCCGAGCAGUGUCU 20 481 myoC-1207 - GAUUUCACCAAUGAGGU UCU 20 1507 myoC-1132 - UCCACGUGAUCCUGGGU UCU 20 1432 myoC-1143 - A A A A U C AG U U C A AG G G A AG U 20 1443 myoC-1127 - CAGAUUCAUUCAAGGGCAGU 20 1427 myoC-3191 - AGAAGGUAAGAAUGCAGAGU 20 2937 myoC-1032 - U UGGUUGGCUGUGCGACCGU 20 1332 myoC-1200 + CAGUCACUGCUGAGCUGCGU 20 1500 myoC-197 - UGAGAAUCUGGCCAGGAGGU 20 583 myoC-1213 - UGCUCUCCCUGGAGCCUGGU 20 1513 myoC-1030 - UUUCUGGUUCUGCCAUUGGU 20 1330 myoC-1178 + UCACAGGCUUUCUGGACUGU 20 1478 myoC-1077 + GGGAAGGAAAAUGUGGCUGU 20 1377 myoC-1137 - AGGAGGCAGGGCUAUAUUGU 20 1437 myoC-1161 - ACAAGUAUUGACACUGU UGU 20 1461 myoC-1147 - U UACU UAGUUUCUCCU UAUU 20 1447 myoC-1154 - AAAAUGAGACUAGUACCCUU 20 1454 myoC-1073 + AAAUGCCAUUGUCUAUGCUU 20 1373 myoC-1220 + UUAAAACAACUGUGUAUCUU 20 1520 myoC-1189 + AUCUGUUUGGCUU UACUCUU 20 1489 myoC-1166 - UGCU UUUUGU UUUUUCUCUU 20 1466 myoC-1160 - GUGAGUCUGCCAGGGCAGUU 20 1460 myoC-1078 + GGAAGGAAAAUGUGGCUGUU 20 1378 myoC-1188 + GACCUAGGCUUGAAUCUGUU 20 1488 myoC-1221 + UAAAACAACUGUGUAUCUUU 20 1521 myoC-1167 - GCUU UUUGUU UUUUCUCUUU 20 1467 myoC-1164 - AAAGU UACU UCUGACAGUUU 20 1464 myoC-1071 + GUUAGUCUCUGCAUUCUU UU 20 1371
Table 10A provides exemplary targeting domains for knocking down the MYOC gene selected according to the first tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, have a high level of orthogonality, start with a 5'G, and PAM is
NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein) One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 10A
Figure imgf000323_0001
myoC-5501 - GCAGGUUCUCAAUGAGUUUGCAGA 24 5247 myoC-5502 - GAAGAAGUCUAUUUCAUGA 19 5248 myoC-5503 - GAGAAGAAGUCUAU UUCAUGA 21 5249 myoC-5504 - GGAGAAGAAGUCUAUU UCAUGA 22 5250 myoC-5505 - GAGGAGAAGAAGUCUAUUUCAUGA 24 5251 myoC-5506 - GUGGGGACGCUGGGGCUGA 19 5252 myoC-5507 - GAGUGGGGACGCUGGGGCUGA 21 5253 myoC-5508 - GGAGUGGGGACGCUGGGGCUGA 22 5254 myoC-5509 - GGGAGUGGGGACGCUGGGGCUGA 23 5255 myoC-5510 - GCAU UCAUUGACAAU UUA 18 5256 myoC-5511 - GGCAUUCAUUGACAAU UUA 19 5257 myoC-3207 - GCUCAGGAAGGCCAAUGAC 19 2953 myoC-3208 - GCUCAGCUCAGGAAGGCCAAUGAC 24 2954 myoC-5512 - GUUAAUUCACGGAAGAAGUGAC 22 5258 myoC-5513 - GGGAGCCCUGCAAGCACC 18 5259 myoC-5514 - GGGGAGCCCUGCAAGCACC 19 5260 myoC-680 - GGGGGAGCCCUGCAAGCACC 20 1020 myoC-5515 - GCUGGGGGAGCCCUGCAAGCACC 23 5261 myoC-1841 - GCUGGCCUGCCUCGCUUCCC 20 2051 myoC-5516 - GCAGCUGGCCUGCCUCGCUUCCC 23 5262 myoC-5517 - GCCCGGAGGCCCCCAAGC 18 5263 myoC-1840 - GUGCCCGGAGGCCCCCAAGC 20 2050 myoC-1908 - GU UAAAAUUCCAGGGUGUGC 20 2091 myoC-5518 - GCUGUUAAAAUUCCAGGGUGUGC 23 5264 myoC-5519 - GCCCUGCAAGCACCCGGGGUC 21 5265 myoC-5520 - GAGCCCUGCAAGCACCCGGGGUC 23 5266 myoC-5521 - GGAGCCCUGCAAGCACCCGGGGUC 24 5267 myoC-5522 - GAAAGGGGCCUCCACGUCCAG 21 5268 myoC-5523 - GG AAAGGGGCCUCCACG UCCAG 22 5269 myoC-5524 - GGGAAAGGGGCCUCCACGUCCAG 23 5270 myoC-5525 - GAGGGAAACUAGUCUAACG 19 5271 myoC-5526 - GAGAGGGAAACUAGUCUAACG 21 5272 myoC-5527 - GGAGAGGGAAACUAGUCUAACG 22 5273 myoC-3209 - GCUUCUGGCCUGCCUGGUG 19 2955 myoC-5528 - G A A A U A A AC ACC A U C U U G 18 5274 myoC-5529 - GGAAAUAAACACCAUCUUG 19 5275 myoC-5530 - GAAAGGAAAUAAACACCAUCUUG 23 5276 myoC-2082 - GCAGGUUCUCAAUGAG UUUG 20 2211 myoC-5531 - GUGCAGGUUCUCAAUGAGUUUG 22 5277 myoC-3210 - GCGACUAAGGCAAGAAAAU 19 2956 myoC-3211 - GAAGCGACUAAGGCAAG A A A A U 22 2957 myoC-5532 - GGGUAUGGGUGCAUAAAU 18 5278 myoC-5533 - GGGGUAUGGGUGCAUAAAU 19 5279 myoC-5534 - GAGAUAUAGGAACUAU UAU 19 5280 myoC-838 - GGAGAUAUAGGAACUAU UAU 20 991 myoC-5535 - GUGGAGAUAUAGGAACUAUUAU 22 5281 myoC-5536 - GGUGGAGAUAUAGGAACUAUUAU 23 5282 myoC-5537 - GUUCAGUGUUGUUCACGGGGCU 22 5283 myoC-5538 - GACU UCUGGAAGGU UAUUU UCU 22 5284 myoC-5539 - GAUAUAGGAACUAUUAUUGGGGU 23 5285 myoC-5540 - GCUACGUCUUAAAGGACUUGU 21 5286
Table 10B provides exemplary targeting domains for knocking down the MYOC gene selected according to the second tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, have a high level of orthogonality and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 10B
Figure imgf000325_0001
myoC-1102 + AGGAAAACCCAUGCACACCC 20 1402 myoC-5559 + A AG G A A A ACCC A U G C AC ACCC 21 5305 myoC-5560 + UGAAGGAAAACCCAUGCACACCC 23 5306 myoC-5561 + ACUCCAGUCACUUCU UCC 18 5307 myoC-2200 + AGACUCCAGUCACU UCUUCC 20 2295 myoC-5562 + AAGACUCCAGUCACUUCUUCC 21 5308 myoC-5563 + AAAG ACUCCAG UCACU UCU UCC 22 5309 myoC-5564 + AAAAGACUCCAGUCACU UCUUCC 23 5310 myoC-5565 + UGCUGUGCUGAGAGGUGC 18 5311 myoC-5566 + CUGCUGUGCUGAGAGGUGC 19 5312 myoC-2353 + UCUGCUGUGCUGAGAGGUGC 20 2407 myoC-5567 + CUCUGCUGUGCUGAGAGGUGC 21 5313 myoC-5568 + AGCUCUGCUGUGCUGAGAGGUGC 23 5314 myoC-5569 + AAGCUCUGCUGUGCUGAGAGGUGC 24 5315 myoC-3212 + UGGCCUCCAGGUCUAAGCG 19 2958 myoC-3213 + UGGUGGCCUCCAGGUCUAAGCG 22 2959 myoC-3214 + U UGGUGGCCUCCAGGUCUAAGCG 23 2960 myoC-3215 + U UUGGUGGCCUCCAGG UCUAAGCG 24 2961 myoC-5570 + AGAGGUGGCCACGUGAGG 18 5316 myoC-5571 + CAGAGGUGGCCACGUGAGG 19 5317 myoC-2337 + ACAGAGGUGGCCACGUGAGG 20 2398 myoC-5572 + AGACAGAGGUGGCCACGUGAGG 22 5318 myoC-5573 + AAG ACAGAGGUGGCCACGUGAGG 23 5319 myoC-5574 + UUGUCAAUGAAUGCCUGG 18 5320 myoC-5575 + AUUGUCAAUGAAUGCCUGG 19 5321 myoC-2131 + AAUUGUCAAUGAAUGCCUGG 20 2249 myoC-5576 + AAAUUGUCAAUGAAUGCCUGG 21 5322 myoC-5577 + UAAAUUGUCAAUGAAUGCCUGG 22 5323 myoC-5578 + AUAAAUUGUCAAUGAAUGCCUGG 23 5324 myoC-5579 + AAUAAAUUGUCAAUGAAUGCCUGG 24 5325 myoC-5580 + UGUGCUGAGAGGUGCCUGG 19 5326 myoC-2352 + CUGUGCUGAGAGGUGCCUGG 20 2406 myoC-5581 + UGCUGUGCUGAGAGGUGCCUGG 22 5327 myoC-5582 + CUGCUGUGCUGAGAGGUGCCUGG 23 5328 myoC-5583 + UCUGCUGUGCUGAGAGGUGCCUGG 24 5329 myoC-3216 + CUGGUCCCGCUCCCGCCU 18 2962 myoC-1690 + AGCUGGUCCCGCUCCCGCCU 20 1946 myoC-3217 + CAGCUGGUCCCGCUCCCGCCU 21 2963 myoC-3218 + CCAGCUGGUCCCGCUCCCGCCU 22 2964 myoC-3219 + UCCAGCUGGUCCCGCUCCCGCCU 23 2965 myoC-3220 + UUCCAGCUGGUCCCGCUCCCGCCU 24 2966 myoC-3221 + AGGCAGUCUCCAACUCUCUGGU 22 2967 myoC-3222 + UAGGCAGUCUCCAACUCUCUGGU 23 2968 myoC-3223 + UGCUGUCUCUCUGUAAGUU 19 2969 myoC-1676 + CUGCUGUCUCUCUGUAAGU U 20 1937 myoC-3224 + UGCUGCUGUCUCUCUGUAAGUU 22 2970 myoC-5584 + ACCUUCCAGAAGUCUGU U 18 5330 myoC-5585 + AACCU UCCAGAAGUCUGUU 19 5331 myoC-885 + UAACCUUCCAGAAGUCUGUU 20 1208 myoC-5586 + AUAACCUUCCAGAAGUCUGUU 21 5332 myoC-5587 + AAU AACCUUCCAGAAGUCUGUU 22 5333 myoC-5588 + AAAU AACCU UCCAGAAGUCUGUU 23 5334 myoC-5589 + AAAAU AACCU U CCAG AAG U CU G U U 24 5335 myoC-3225 - AGCUGGAAACCCAAACCA 18 2971 myoC-3226 - CAGCUGGAAACCCAAACCA 19 2972 myoC-1635 - CC AG C U G G A A ACCC A A ACC A 20 1904 myoC-3227 - ACCAGCUGGAAACCCAAACCA 21 2973 myoC-3228 - UCAGUGUGGCCAGUCCCA 18 2974 myoC-3229 - UUCAGUGUGGCCAGUCCCA 19 2975 myoC-1604 - CU UCAGUGUGGCCAGUCCCA 20 1884 myoC-3230 - CCUUCAGUGUGGCCAG UCCCA 21 2976 myoC-3231 - ACCU U C AG U G U G G CCAG U CCC A 22 2977 myoC-3232 - UACCUUCAGUGUGGCCAGUCCCA 23 2978 myoC-3233 - AUACCUUCAGUGUGGCCAGUCCCA 24 2979 myoC-5590 - UCUCAAUGAGUUUGCAGA 18 5336 myoC-5591 - UUCUCAAUGAGUU UGCAGA 19 5337 myoC-5592 - AGGU UCUCAAUGAGUUUGCAGA 22 5338 myoC-5593 - CAGG UUCUCAAUGAGU UUGCAGA 23 5339 myoC-5594 - AAGAAGUCUAUU UCAUGA 18 5340 myoC-1006 - AGAAGAAGUCUAUU UCAUGA 20 1306 myoC-5595 - AGG AG AAGAAGUCUAU UUCAUGA 23 5341 myoC-5596 - UGGGGACGCUGGGGCUGA 18 5342 myoC-1885 - AGUGGGGACGCUGGGGCUGA 20 2075 myoC-5597 - AGGGAGUGGGGACGCUGGGGCUGA 24 5343 myoC-1823 - AGGCAUUCAUUGACAAUUUA 20 2037 myoC-3234 - CUCAGGAAGGCCAAUGAC 18 2980 myoC-1603 - AGCUCAGGAAGGCCAAUGAC 20 1883 myoC-3235 - CAGCUCAGGAAGGCCAAUGAC 21 2981 myoC-3236 - UCAGCUCAGGAAGGCCAAUGAC 22 2982 myoC-3237 - CUCAGCUCAGGAAGGCCAAUGAC 23 2983 myoC-5598 - AU UCACGGAAGAAGUGAC 18 5344 myoC-5599 - AAU UCACGGAAGAAGUGAC 19 5345 myoC-1018 - UAAUUCACGGAAGAAGUGAC 20 1318 myoC-5600 - UU AAUUCACGGAAGAAGUGAC 21 5346 myoC-5601 - CG U U AAU U CACGG AAG AAG UG AC 23 5347 myoC-5602 - CCGUUAAUUCACGGAAGAAGUGAC 24 5348 myoC-5603 - UGGGGGAGCCCUGCAAGCACC 21 5349 myoC-5604 - CUGGGGGAGCCCUGCAAGCACC 22 5350 myoC-5605 - AGCUGGGGGAGCCCUGCAAGCACC 24 5351 myoC-5606 - UGGCCUGCCUCGCUUCCC 18 5352 myoC-5607 - CUGGCCUGCCUCGCU UCCC 19 5353 myoC-5608 - AGCUGGCCUGCCUCGCU UCCC 21 5354 myoC-5609 - CAGCUGGCCUGCCUCGCUUCCC 22 5355 myoC-5610 - UGCAGCUGGCCUGCCUCGCUUCCC 24 5356 myoC-5611 - UGCCCGGAGGCCCCCAAGC 19 5357 myoC-5612 - CGUGCCCGGAGGCCCCCAAGC 21 5358 myoC-5613 - UCG UGCCCGGAGGCCCCCAAGC 22 5359 myoC-5614 - AUCGUGCCCGGAGGCCCCCAAGC 23 5360 myoC-5615 - CAUCGUGCCCGGAGGCCCCCAAGC 24 5361 myoC-5616 - UAAAAUUCCAGGGUGUGC 18 5362 myoC-5617 - UUAAAAUUCCAGGGUGUGC 19 5363 myoC-5618 - UGU UAAAAUUCCAGGGUGUGC 21 5364 myoC-5619 - CUGUUAAAAU UCCAGGGUGUGC 22 5365 myoC-5620 - AGCUGUUAAAAUUCCAGGGUGUGC 24 5366 myoC-5621 - CUGCAAGCACCCGGGGUC 18 5367 myoC-5622 - CC U G C A AG CACCCGGGGUC 19 5368 myoC-1819 - CCCUGCAAGCACCCGGGGUC 20 2034 myoC-5623 - AG CCC U G C A AG CACCCGGGGUC 22 5369 myoC-5624 - UAAAGUCAGCUGUUAAAAUUC 21 5370 myoC-5625 - AU A AAG U CAG CU G U U AAA AU U C 22 5371 myoC-5626 - CAUAAAGUCAGCUGUUAAAAUUC 23 5372 myoC-5627 - UCAUAAAGUCAGCUGU UAAAAUUC 24 5373 myoC-5628 - AGGGGCCUCCACGUCCAG 18 5374 myoC-5629 - AAGGGGCCUCCACGUCCAG 19 5375 myoC-1870 - AAAGGGGCCUCCACGUCCAG 20 2068 myoC-5630 - AGGGAAAGGGGCCUCCACGUCCAG 24 5376 myoC-5631 - AGGGAAACUAGUCUAACG 18 5377 myoC-1856 - AGAGGGAAACUAGUCUAACG 20 2061 myoC-5632 - UGG AG AGGGAAACUAGUCUAACG 23 5378 myoC-5633 - AUGGAGAGGGAAACUAGUCUAACG 24 5379 myoC-3238 - CUUCUGGCCUGCCUGGUG 18 2984 myoC-171 - UGCUUCUGGCCUGCCUGGUG 20 557 myoC-1837 - AG G A A A U A AAC ACC A U C U U G 20 2048 myoC-5634 - A AG G AAA U A A AC ACC A U C U U G 21 5380 myoC-5635 - AAAGGAAAUAAACACCAUCUUG 22 5381 myoC-5636 - AG A AAG G AAA U A A AC ACC A U C U U G 24 5382 myoC-5637 - AGGUUCUCAAUGAGUU UG 18 5383 myoC-5638 - CAGGUUCUCAAUGAGU UUG 19 5384 myoC-5639 - UGCAGGU UCUCAAUGAGUUUG 21 5385 myoC-5640 - AGUGCAGGUUCUCAAUGAGUU UG 23 5386 myoC-5641 - CAGUGCAGGU UCUCAAUGAGUUUG 24 5387 myoC-3239 - CGACUAAGG C A AG A A A A U 18 2985 myoC-1648 - AGCGACUAAGGCAAGAAAAU 20 1914 myoC-3240 - AAGCGACUAAGG C A AG A A A A U 21 2986 myoC-3241 - AGAAGCGACUAAGGCAAGAAAAU 23 2987 myoC-3242 - AAGAAGCGACUAAGG C A AG A A A A U 24 2988 myoC-843 - UGGGGUAUGGGUGCAUAAAU 20 1214 myoC-5642 - CGAAGGCCU UUAUUUAAU 18 5388 myoC-5643 - ACG AAGGCCU U U AU U UAAU 19 5389 myoC-1014 - CACGAAGGCCUU UAUUUAAU 20 1314 myoC-5644 - UCACGAAGGCCU UUAUU UAAU 21 5390 myoC-5645 - UUCACGAAGGCCUUUAU UUAAU 22 5391 myoC-5646 - CU UCACGAAGGCCUUUAUUUAAU 23 5392 myoC-5647 - CCU U CACG AAGGCCU U UAUU UAAU 24 5393 myoC-5648 - AGAUAUAGGAACUAUUAU 18 5394 myoC-5649 - UGGAGAUAUAGGAACUAUUAU 21 5395 myoC-5650 - AGGUGG AGAUAUAGGAACUAUUAU 24 5396 myoC-5651 - AGUGU UGUUCACGGGGCU 18 5397 myoC-5652 - CAGUGUUGUUCACGGGGCU 19 5398 myoC-1003 - UCAGUGUUGUUCACGGGGCU 20 1303 myoC-5653 - UUCAGUGUUGU UCACGGGGCU 21 5399 myoC-5654 - UGUUCAGUGUUGUUCACGGGGCU 23 5400 myoC-5655 - AUGU UCAGUGUUGUUCACGGGGCU 24 5401 myoC-5656 - UCUGGAAGGU UAUUU UCU 18 5402 myoC-5657 - UUCUGGAAGGUUAUU UUCU 19 5403 myoC-2100 - CUUCUGGAAGGUUAUU UUCU 20 2223 myoC-5658 - ACUUCUGGAAGGUUAUUUUCU 21 5404 myoC-5659 - AGACUUCUGGAAGGUUAUUU UCU 23 5405 myoC-5660 - CAGACU UCUGGAAGGUUAU UUUCU 24 5406 myoC-5661 - AGGAACUAUUAUUGGGGU 18 5407 myoC-5662 - UAGGAACUAU UAUUGGGGU 19 5408 myoC-2094 - AUAGGAACUAUUAUUGGGGU 20 2219 myoC-5663 - UAUAGGAACUAUUAUUGGGGU 21 5409 myoC-5664 - AUAUAGGAACUAUUAUUGGGGU 22 5410 myoC-5665 - AGAUAUAGGAACUAUUAU UGGGGU 24 5411 myoC-5666 - ACGUCUUAAAGGACU UGU 18 5412 myoC-5667 - UACGUCUUAAAGGACUUGU 19 5413 myoC-2080 - CUACGUCU UAAAGGACU UGU 20 2209 myoC-5668 - UGCUACGUCUUAAAGGACUUGU 22 5414 myoC-5669 - CUGCUACGUCUUAAAGGACUUGU 23 5415 myoC-5670 - CCUGCUACGUCUUAAAGGACUUGU 24 5416
Table IOC provides exemplary targeting domains for knocking down the MYOC gene selected according to the third tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairingAny of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table IOC
Figure imgf000330_0001
myoC-5702 + UCAAUAAAU UGUCAAUGAAUGC 22 5448 myoC-5703 + CUCAAUAAAUUGUCAAUGAAUGC 23 5449 myoC-5704 + ACUCAAUAAAU UGUCAAUGAAUGC 24 5450 myoC-3243 + CUCCCUCUGCAGCCCCUC 18 2989 myoC-3244 + GCUCCCUCUGCAGCCCCUC 19 2990 myoC-1689 + AGCUCCCUCUGCAGCCCCUC 20 1945 myoC-3245 + CAGCUCCCUCUGCAGCCCCUC 21 2991 myoC-3246 + CCAGCUCCCUCUGCAGCCCCUC 22 2992 myoC-3247 + CCCAGCUCCCUCUGCAGCCCCUC 23 2993 myoC-3248 + GCCCAGCUCCCUCUGCAGCCCCUC 24 2994 myoC-5705 + GGGUGGGGCUGUGCACAG 18 5451 myoC-5706 + UGGGUGGGGCUGUGCACAG 19 5452 myoC-882 + CUGGGUGGGGCUGUGCACAG 20 1205 myoC-5707 + GCUGGGUGGGGCUGUGCACAG 21 5453 myoC-5708 + GGCUGGGUGGGGCUGUGCACAG 22 5454 myoC-5709 + AGGCUGGGUGGGGCUGUGCACAG 23 5455 myoC-5710 + GAGGCUGGGUGGGGCUGUGCACAG 24 5456 myoC-3249 + UGGCUCUGCUCUGGGCAG 18 2995 myoC-3250 + CUGGCUCUGCUCUGGGCAG 19 2996 myoC-1674 + CCUGGCUCUGCUCUGGGCAG 20 1935 myoC-3251 + GCCUGGCUCUGCUCUGGGCAG 21 2997 myoC-3252 + GGCCUGGCUCUGCUCUGGGCAG 22 2998 myoC-3253 + UGGCCUGGCUCUGCUCUGGGCAG 23 2999 myoC-3254 + AUGGCCUGGCUCUGCUCUGGGCAG 24 3000 myoC-3255 + AGGAGGCUCUCCAGGGAG 18 3001 myoC-3256 + GAGGAGGCUCUCCAGGGAG 19 3002 myoC-1679 + GGAGGAGGCUCUCCAGGGAG 20 1940 myoC-3257 + UGGAGGAGGCUCUCCAGGGAG 21 3003 myoC-3258 + GUGGAGGAGGCUCUCCAGGGAG 22 3004 myoC-3259 + GG UGGAGGAGGCUCUCCAGGGAG 23 3005 myoC-3260 + UGGUGGAGGAGGCUCUCCAGGGAG 24 3006 myoC-3261 + AGUCUCCAACUCUCUGGU 18 3007 myoC-3262 + CAGUCUCCAACUCUCUGGU 19 3008 myoC-1691 + GCAGUCUCCAACUCUCUGGU 20 1947 myoC-5711 - CAGGAGGUGGGGACUGCA 18 5457 myoC-5712 - CCAGGAGGUGGGGACUGCA 19 5458 myoC-984 - UCCAGGAGGUGGGGACUGCA 20 1284 myoC-5713 - UUCCAGGAGGUGGGGACUGCA 21 5459 myoC-5714 - AU UCCAGGAGGUGGGGACUGCA 22 5460 myoC-5715 - AAU UCCAGGAGGUGGGGACUGCA 23 5461 myoC-5716 - GAAUUCCAGGAGGUGGGGACUGCA 24 5462 myoC-5717 - GCACAGUGCAGGUUCUCA 18 5463 myoC-5718 - GGCACAGUGCAGGUUCUCA 19 5464 myoC-2081 - UGGCACAGUGCAGGUUCUCA 20 2210 myoC-5719 - CUGGCACAGUGCAGGUUCUCA 21 5465 myoC-5720 - CCUGGCACAGUGCAGGUUCUCA 22 5466 myoC-5721 - GCCUGGCACAGUGCAGGU UCUCA 23 5467 myoC-5722 - UGCCUGGCACAGUGCAGGU UCUCA 24 5468 myoC-5723 - CAGGCAUUCAUUGACAAU UUA 21 5469 myoC-5724 - CCAGGCAU UCAUUGACAAUUUA 22 5470 myoC-5725 - UCCAGGCAUUCAUUGACAAUUUA 23 5471 myoC-5726 - AUCCAGGCAUUCAUUGACAAUU UA 24 5472 myoC-5727 - AG UCAGCUGUUAAAAU UC 18 5473 myoC-5728 - AAGUCAGCUGUUAAAAU UC 19 5474 myoC-1907 - AAAGUCAGCUGUUAAAAUUC 20 2090 myoC-3263 - CUGCU UCUGGCCUGCCUGGUG 21 3009 myoC-3264 - GCUGCUUCUGGCCUGCCUGGUG 22 3010 myoC-3265 - UGCUGCUUCUGGCCUGCCUGGUG 23 3011 myoC-3266 - CUGCUGCU UCUGGCCUGCCUGGUG 24 3012 myoC-5729 - UUGGGGUAUGGGUGCAUAAAU 21 5475 myoC-5730 - AU UGGGGUAUGGGUGCAUAAAU 22 5476 myoC-5731 - UAUUGGGGUAUGGGUGCAUAAAU 23 5477 myoC-5732 - UU AUUGGGGUAUGGGUGCAUAAAU 24 5478
Table 10D provides exemplary targeting domains for knocking down the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 10D
Figure imgf000332_0001
myoC-2326 + GU UUGGAGUU UCUUU UUAAA 20 2392 myoC-5741 + UGUUUGGAGU UUCUUU UUAAA 21 5487 myoC-5742 + CUGU UUGGAGU UUCUU UUUAAA 22 5488 myoC-5743 + UCUGU UUGGAG UUUCU UUUUAAA 23 5489 myoC-5744 + GUCUGUUUGGAGUUUCUUUU UAAA 24 5490 myoC-5745 + AAGGCUCACAGGAAGCAA 18 5491 myoC-5746 + AAAGGCUCACAGGAAGCAA 19 5492 myoC-1105 + A A AAG G C U C AC AG G A AG C A A 20 1405 myoC-5747 + A A A A AG G C U C AC AG G A AG C A A 21 5493 myoC-5748 + U A A A A AG G C U C AC AG G A AG C A A 22 5494 myoC-5749 + AUAAAAAGGCUCACAGGAAGCAA 23 5495 myoC-5750 + GAUAAAAAGGCUCACAGGAAGCAA 24 5496 myoC-5751 + GAAUUAACGGCCUAGGAA 18 5497 myoC-5752 + UGAAUUAACGGCCUAGGAA 19 5498 myoC-2197 + GUGAAUUAACGGCCUAGGAA 20 2293 myoC-5753 + CG UGAAUUAACGGCCUAGGAA 21 5499 myoC-5754 + CCG U G A A U U A ACG G CC U AG G A A 22 5500 myoC-5755 + UCCG UGAAUUAACGGCCUAGGAA 23 5501 myoC-5756 + UUCCGUGAAUUAACGGCCUAGGAA 24 5502 myoC-5757 + CAGGCACUAUGCUAGGAA 18 5503 myoC-5758 + CCAGGCACUAUGCUAGGAA 19 5504 myoC-2319 + GCCAGGCACUAUGCUAGGAA 20 2386 myoC-5759 + UGCCAGGCACUAUGCUAGGAA 21 5505 myoC-5760 + GUGCCAGGCACUAUGCUAGGAA 22 5506 myoC-5761 + UG UGCCAGGCACUAUGCUAGGAA 23 5507 myoC-5762 + CUGUGCCAGGCACUAUGCUAGGAA 24 5508 myoC-5763 + CAGGACGAUUCACGGGAA 18 5509 myoC-5764 + CC AG G ACG AU U C ACG G G A A 19 5510 myoC-2162 + ACCAGGACGAUUCACGGGAA 20 2268 myoC-5765 + CACCAGGACGAUUCACGGGAA 21 5511 myoC-5766 + GCACCAGG ACG AU UCACGGG AA 22 5512 myoC-5767 + UGCACCAGGACGAU UCACGGGAA 23 5513 myoC-5768 + AUGCACCAGG ACG AU UCACGGG AA 24 5514 myoC-5769 + CCAGCCCCGUGAACAACA 18 5515 myoC-5770 + CCCAGCCCCG U G AACAACA 19 5516 myoC-2182 + UCCCAGCCCCGUGAACAACA 20 2282 myoC-5771 + C U CCC AG CCCCG U G AACAACA 21 5517 myoC-5772 + ACU CCCAG CCCCG U G AACAACA 22 5518 myoC-5773 + AACUCCCAGCCCCGUGAACAACA 23 5519 myoC-5774 + AAACUCCCAGCCCCG UG AACAACA 24 5520 myoC-3267 + UCAUUGGGACUGGCCACA 18 3013 myoC-3268 + U UCAU UGGGACUGGCCACA 19 3014 myoC-1671 + AUUCAUUGGGACUGGCCACA 20 1933 myoC-3269 + GAU UCAUUGGGACUGGCCACA 21 3015 myoC-3270 + GG AUUCAUUGGGACUGGCCACA 22 3016 myoC-3271 + UGGAU UCAUUGGGACUGGCCACA 23 3017 myoC-3272 + CUGGAU UCAUUGGGACUGGCCACA 24 3018 myoC-5775 + UGGGUGGGGCUGUGCACA 18 5521 myoC-5776 + CUGGGUGGGGCUGUGCACA 19 5522 myoC-881 + GCUGGGUGGGGCUGUGCACA 20 1050 myoC-5777 + GGCUGGGUGGGGCUGUGCACA 21 5523 myoC-5778 + AGGCUGGGUGGGGCUGUGCACA 22 5524 myoC-5779 + GAGGCUGGGUGGGGCUGUGCACA 23 5525 myoC-5780 + UGAGGCUGGGUGGGGCUGUGCACA 24 5526 myoC-5781 + AUGAAUGAACGAGUCACA 18 5527 myoC-5782 + GAUGAAUGAACGAGUCACA 19 5528 myoC-2128 + GG AUGAAUGAACGAGUCACA 20 2246 myoC-5783 + UGG AUGAAUGAACGAGUCACA 21 5529 myoC-5784 + CUGG AUGAAUGAACGAGUCACA 22 5530 myoC-5785 + CCUGG AUGAAUGAACGAGUCACA 23 5531 myoC-5786 + GCCUGG AUGAAUGAACGAGUCACA 24 5532 myoC-5787 + UAAGACGUAGCAGGGACA 18 5533 myoC-5788 + U UAAGACGUAGCAGGGACA 19 5534 myoC-2314 + UU UAAGACGUAGCAGGGACA 20 2383 myoC-5789 + CU UUAAGACGUAGCAGGGACA 21 5535 myoC-5790 + CCU U UAAGACGUAGCAGGGACA 22 5536 myoC-5791 + UCCU UUAAGACGUAGCAGGGACA 23 5537 myoC-5792 + GUCCUUUAAGACGUAGCAGGGACA 24 5538 myoC-5793 + GCUCAUGCCCGAGCUCCA 18 5539 myoC-5794 + GGCUCAUGCCCGAGCUCCA 19 5540 myoC-2349 + UGGCUCAUGCCCGAGCUCCA 20 2403 myoC-5795 + CUGGCUCAUGCCCGAGCUCCA 21 5541 myoC-5796 + GCUGGCUCAUGCCCGAGCUCCA 22 5542 myoC-5797 + UGCUGGCUCAUGCCCGAGCUCCA 23 5543 myoC-5798 + U UGCUGGCUCAUGCCCGAGCUCCA 24 5544 myoC-3273 + GGUGGAGGAGGCUCUCCA 18 3019 myoC-3274 + UGGUGGAGGAGGCUCUCCA 19 3020 myoC-223 + UUGGUGGAGGAGGCUCUCCA 20 609 myoC-3275 + AU UGGUGGAGGAGGCUCUCCA 21 3021 myoC-3276 + AAU UGGUGGAGGAGGCUCUCCA 22 3022 myoC-3277 + CAAUUGGUGGAGGAGGCUCUCCA 23 3023 myoC-3278 + UCAAUUGGUGGAGGAGGCUCUCCA 24 3024 myoC-5799 + CUUCUUCUCCUCCAAGCA 18 5545 myoC-5800 + ACU UCUUCUCCUCCAAGCA 19 5546 myoC-2188 + GACUUCUUCUCCUCCAAGCA 20 2286 myoC-5801 + AGACU UCUUCUCCUCCAAGCA 21 5547 myoC-5802 + UAGACUUCUUCUCCUCCAAGCA 22 5548 myoC-5803 + AUAGACU UCUUCUCCUCCAAGCA 23 5549 myoC-5804 + AAUAGACUUCUUCUCCUCCAAGCA 24 5550 myoC-5805 + A A AG G C U CAC AG G A AG C A 18 5551 myoC-5806 + AAAAGGCUCACAGGAAGCA 19 5552 myoC-2185 + AAAAAGGCUCACAGGAAGCA 20 2284 myoC-5807 + U A A A A AG G C U C AC AG G A AG C A 21 5553 myoC-5808 + A U A A A A AG G C U C AC AG G A AG C A 22 5554 myoC-5809 + GAUAAAAAGGCUCACAGGAAGCA 23 5555 myoC-5810 + AGAUAAAAAGGCUCACAGGAAGCA 24 5556 myoC-5811 + GGCACGAUGGAGGCAGCA 18 5557 myoC-5812 + GGGCACGAUGGAGGCAGCA 19 5558 myoC-714 + CGGGCACGAUGGAGGCAGCA 20 1105 myoC-5813 + CCGGGCACGAUGGAGGCAGCA 21 5559 myoC-5814 + UCCGGGCACGAUGGAGGCAGCA 22 5560 myoC-5815 + CUCCGGGCACGAUGGAGGCAGCA 23 5561 myoC-5816 + CCUCCGGGCACGAUGGAGGCAGCA 24 5562 myoC-3279 + A AG CU G CAG CAACG U G C A 18 3025 myoC-3280 + AAAGCUGCAGCAACGUGCA 19 3026 myoC-1666 + C A A AG C U G C AG CAACG U G CA 20 1928 myoC-3281 + CC A A AG C U G C AG CAACG U G C A 21 3027 myoC-3282 + CCCAAAGCUGCAGCAACGUGCA 22 3028 myoC-3283 + G CCC A A AG C U G C AG CAACG U G C A 23 3029 myoC-3284 + G G CCC AA AG CU G CAG CAACG U G C A 24 3030 myoC-5817 + GCUGGGUGGGGCUGUGCA 18 5563 myoC-5818 + GGCUGGGUGGGGCUGUGCA 19 5564 myoC-2334 + AGGCUGGGUGGGGCUGUGCA 20 2396 myoC-5819 + GAGGCUGGGUGGGGCUGUGCA 21 5565 myoC-5820 + UGAGGCUGGGUGGGGCUGUGCA 22 5566 myoC-5821 + GUGAGGCUGGGUGGGGCUGUGCA 23 5567 myoC-5822 + CGUGAGGCUGGGUGGGGCUGUGCA 24 5568 myoC-5823 + AUUCACUCUGCAAACUCA 18 5569 myoC-5824 + CAUUCACUCUGCAAACUCA 19 5570 myoC-2323 + CCAU UCACUCUGCAAACUCA 20 2389 myoC-5825 + UCCAU UCACUCUGCAAACUCA 21 5571 myoC-5826 + UUCCAUUCACUCUGCAAACUCA 22 5572 myoC-5827 + UUUCCAUUCACUCUGCAAACUCA 23 5573 myoC-5828 + AUUUCCAUUCACUCUGCAAACUCA 24 5574 myoC-5829 + AAAAGAUAAAAAGGCUCA 18 5575 myoC-5830 + G A A A AG A U A A A A AG G C U C A 19 5576 myoC-2187 + AGAAAAGAUAAAAAGGCUCA 20 2285 myoC-5831 + GAGAAAAGAUAAAAAGGCUCA 21 5577 myoC-5832 + AGAGAAAAGAUAAAAAGGCUCA 22 5578 myoC-5833 + CAGAGAAAAGAUAAAAAGGCUCA 23 5579 myoC-5834 + GCAGAGAAAAGAUAAAAAGGCUCA 24 5580 myoC-5835 + AUGCACCAGG ACG AU UCA 18 5581 myoC-5836 + GAUGCACCAGGACGAU UCA 19 5582 myoC-2164 + AG AUGCACCAGG ACG AU UCA 20 2270 myoC-5837 + CAG AUGCACCAGG ACG AU UCA 21 5583 myoC-5838 + UCAG AUGCACCAGG ACG AU UCA 22 5584 myoC-5839 + CUCAG AUGCACCAGG ACG AU UCA 23 5585 myoC-5840 + GCUCAG AUGCACCAGG ACGAU UCA 24 5586 myoC-3285 + UCUGGGCAGCUGGAU UCA 18 3031 myoC-3286 + CUCUGGGCAGCUGGAUUCA 19 3032 myoC-1673 + GCUCUGGGCAGCUGGAUUCA 20 1934 myoC-3287 + UGCUCUGGGCAGCUGGAUUCA 21 3033 myoC-3288 + CUGCUCUGGGCAGCUGGAUUCA 22 3034 myoC-3289 + UCUGCUCUGGGCAGCUGGAUUCA 23 3035 myoC-3290 + CUCUGCUCUGGGCAGCUGGAUUCA 24 3036 myoC-5841 + UGGGGAGCCAGCCCUUCA 18 5587 myoC-5842 + CUGGGGAGCCAGCCCUUCA 19 5588 myoC-868 + ACUGGGGAGCCAGCCCU UCA 20 1177 myoC-5843 + UACUGGGGAGCCAGCCCUUCA 21 5589 myoC-5844 + AU ACUGGGGAGCCAGCCCU UCA 22 5590 myoC-5845 + U AU ACUGGGG AGCCAGCCCU UCA 23 5591 myoC-5846 + AUAUACUGGGGAGCCAGCCCUUCA 24 5592 myoC-5847 + GCCCUUCAUGGGGGAAGA 18 5593 myoC-5848 + AGCCCU UCAUGGGGGAAGA 19 5594 myoC-2339 + CAGCCCU UCAUGGGGGAAGA 20 2400 myoC-5849 + CCAGCCCUUCAUGGGGGAAGA 21 5595 myoC-5850 + GCCAGCCCUUCAUGGGGGAAGA 22 5596 myoC-5851 + AGCCAGCCCU UCAUGGGGGAAG A 23 5597 myoC-5852 + GAGCCAGCCCUUCAUGGGGGAAGA 24 5598 myoC-5853 + GGGGGCCUCCGGGCACGA 18 5599 myoC-5854 + UGGGGGCCUCCGGGCACGA 19 5600 myoC-711 + UUGGGGGCCUCCGGGCACGA 20 1123 myoC-5855 + CU UGGGGGCCUCCGGGCACGA 21 5601 myoC-5856 + GCU UGGGGGCCUCCGGGCACGA 22 5602 myoC-5857 + GGCU UGGGGGCCUCCGGGCACGA 23 5603 myoC-5858 + GGGCUUGGGGGCCUCCGGGCACGA 24 5604 myoC-5859 + UUUAAGACGUAGCAGGGA 18 5605 myoC-5860 + CU UUAAGACGUAGCAGGGA 19 5606 myoC-2315 + CCUUUAAGACGUAGCAGGGA 20 2384 myoC-5861 + UCCUU UAAGACGUAGCAGGGA 21 5607 myoC-5862 + GUCCUUUAAGACGUAGCAGGGA 22 5608 myoC-5863 + AG UCCUUUAAGACGUAGCAGGGA 23 5609 myoC-5864 + AAGUCCUUUAAGACGUAGCAGGGA 24 5610 myoC-5865 + AGGGCUCCCCCAGCUGGA 18 5611 myoC-5866 + CAGGGCUCCCCCAGCUGGA 19 5612 myoC-2116 + GCAGGGCUCCCCCAGCUGGA 20 2235 myoC-5867 + UGCAGGGCUCCCCCAGCUGGA 21 5613 myoC-5868 + U UGCAGGGCUCCCCCAGCUGGA 22 5614 myoC-5869 + CUUGCAGGGCUCCCCCAGCUGGA 23 5615 myoC-5870 + GCUUGCAGGGCUCCCCCAGCUGGA 24 5616 myoC-5871 + GU UGCCCAGAAGACAUGA 18 5617 myoC-5872 + AGUUGCCCAGAAGACAUGA 19 5618 myoC-2201 + UAGUUGCCCAGAAGACAUGA 20 2296 myoC-5873 + G U AG U UGCCCAG AAG ACAU G A 21 5619 myoC-5874 + AGUAGUUGCCCAGAAGACAUGA 22 5620 myoC-5875 + GAGUAGUUGCCCAGAAGACAUGA 23 5621 myoC-5876 + UGAGUAGUUGCCCAGAAGACAUGA 24 5622 myoC-5877 + CAAUGAAUGCCUGGAUGA 18 5623 myoC-5878 + UCAAUGAAUGCCUGGAUGA 19 5624 myoC-2130 + GUCAAUGAAUGCCUGGAUGA 20 2248 myoC-5879 + UG UCAAUGAAUGCCUGGAUGA 21 5625 myoC-5880 + UUGUCAAUGAAUGCCUGGAUGA 22 5626 myoC-5881 + AUUG UCAAUGAAUGCCUGGAUGA 23 5627 myoC-5882 + AAUUGUCAAUGAAUGCCUGGAUGA 24 5628 myoC-5883 + CUGCAGCGCUGUGACUGA 18 5629 myoC-5884 + GCUGCAGCGCUGUGACUGA 19 5630 myoC-698 + AGCUGCAGCGCUGUGACUGA 20 1089 myoC-5885 + CAGCUGCAGCGCUGUGACUGA 21 5631 myoC-5886 + CCAGCUGCAGCGCUGUGACUGA 22 5632 myoC-5887 + GCCAGCUGCAGCGCUGUGACUGA 23 5633 myoC-5888 + GGCCAGCUGCAGCGCUGUGACUGA 24 5634 myoC-5889 + AAAUAAAGGCCUUCGUGA 18 5635 myoC-5890 + UAAAUAAAGGCCUUCGUGA 19 5636 myoC-1101 + U U AAAUAAAGGCCUUCGUGA 20 1401 myoC-5891 + AU UAAAUAAAGGCCUUCGUGA 21 5637 myoC-5892 + CAU UAAAUAAAGGCCUUCGUGA 22 5638 myoC-5893 + CCAU U AAAU AAAGGCCU UCG UG A 23 5639 myoC-5894 + CCCAUUAAAUAAAGGCCUUCGUGA 24 5640 myoC-5895 + CAGAGAGGUU UAUAUAUA 18 5641 myoC-5896 + CCAGAGAGGUUUAUAUAUA 19 5642 myoC-2348 + UCCAGAGAGGUUUAUAUAUA 20 2402 myoC-5897 + CUCCAGAGAGGUU UAUAUAUA 21 5643 myoC-5898 + GCUCCAGAGAGGU UUAUAUAUA 22 5644 myoC-5899 + AGCUCCAGAGAGGUUUAUAUAUA 23 5645 myoC-5900 + GAGCUCCAGAGAGGUUUAUAUAUA 24 5646 myoC-5901 + AGGCAGCAGGGGGCGCUA 18 5647 myoC-5902 + GAGGCAGCAGGGGGCGCUA 19 5648 myoC-718 + GG AGGCAGCAGGGGGCGCUA 20 1015 myoC-5903 + UGG AGGCAGCAGGGGGCGCUA 21 5649 myoC-5904 + AUGG AGGCAGCAGGGGGCGCUA 22 5650 myoC-5905 + GAUGG AGGCAGCAGGGGGCGCUA 23 5651 myoC-5906 + CGAUGGAGGCAGCAGGGGGCGCUA 24 5652 myoC-5907 + AGGCACUAUGCUAGGAAC 18 5653 myoC-5908 + CAGGCACUAUGCUAGGAAC 19 5654 myoC-892 + CCAGGCACUAUGCUAGGAAC 20 1196 myoC-5909 + GCCAGGCACUAUGCUAGGAAC 21 5655 myoC-5910 + UGCCAGGCACUAUGCUAGGAAC 22 5656 myoC-5911 + GUGCCAGGCACUAUGCUAGGAAC 23 5657 myoC-5912 + UG UGCCAGGCACUAUGCUAGGAAC 24 5658 myoC-5913 + AACAGCCAGCCAGAACAC 18 5659 myoC-5914 + UAACAGCCAGCCAGAACAC 19 5660 myoC-2312 + AUAACAGCCAGCCAGAACAC 20 2381 myoC-5915 + A A U A AC AG CC AG CC AG A AC AC 21 5661 myoC-5916 + AAAUAACAGCCAGCCAGAACAC 22 5662 myoC-5917 + A A A A U A AC AG CC AG CC AG A AC AC 23 5663 myoC-5918 + AAAAAUAACAGCCAGCCAGAACAC 24 5664 myoC-5919 + ACGUACACACACU UACAC 18 5665 myoC-5920 + CACG UACACACACUUACAC 19 5666 myoC-2325 + AC ACG U AC AC AC AC U U AC AC 20 2391 myoC-5921 + CACACG U ACACACACU U ACAC 21 5667 myoC-5922 + AC AC ACG U AC AC AC AC U U AC AC 22 5668 myoC-5923 + CACACACGU ACACACACU UACAC 23 5669 myoC-5924 + ACACACACG U ACAC ACAC U UACAC 24 5670 myoC-5925 + GAAGACAGAGGUGGCCAC 18 5671 myoC-5926 + GGAAGACAGAGGUGGCCAC 19 5672 myoC-2338 + GGGAAGACAGAGGUGGCCAC 20 2399 myoC-5927 + GGGGAAGACAGAGGUGGCCAC 21 5673 myoC-5928 + GGGGGAAG ACAG AGG UGGCCAC 22 5674 myoC-5929 + UGGGGGAAGACAGAGGUGGCCAC 23 5675 myoC-5930 + AUGGGGGAAGACAGAGGUGGCCAC 24 5676 myoC-5931 + UCUCCAGCUCAGAUGCAC 18 5677 myoC-5932 + GUCUCCAGCUCAGAUGCAC 19 5678 myoC-2166 + AGUCUCCAGCUCAGAUGCAC 20 2272 myoC-5933 + GAGUCUCCAGCUCAGAUGCAC 21 5679 myoC-5934 + GGAGUCUCCAGCUCAGAUGCAC 22 5680 myoC-5935 + AGGAGUCUCCAGCUCAGAUGCAC 23 5681 myoC-5936 + AAGGAGUCUCCAGCUCAGAUGCAC 24 5682 myoC-5937 + CUGGGUGGGGCUGUGCAC 18 5683 myoC-5938 + GCUGGGUGGGGCUGUGCAC 19 5684 myoC-880 + GGCUGGGUGGGGCUGUGCAC 20 1051 myoC-5939 + AGGCUGGGUGGGGCUGUGCAC 21 5685 myoC-5940 + GAGGCUGGGUGGGGCUGUGCAC 22 5686 myoC-5941 + UGAGGCUGGGUGGGGCUGUGCAC 23 5687 myoC-5942 + GUGAGGCUGGGUGGGGCUGUGCAC 24 5688 myoC-5943 + A A AG A U A A A A AG G C U C AC 18 5689 myoC-5944 + A A A AG A U A A A A AG G C U C AC 19 5690 myoC-1104 + G A A A AG A U A A A A AG G C U C AC 20 1404 myoC-5945 + AGAAAAGAUAAAAAGGCUCAC 21 5691 myoC-5946 + GAGAAAAGAUAAAAAGGCUCAC 22 5692 myoC-5947 + AGAGAAAAGAUAAAAAGGCUCAC 23 5693 myoC-5948 + CAGAGAAAAGAUAAAAAGGCUCAC 24 5694 myoC-5949 + UGCACCAGGACGAUUCAC 18 5695 myoC-5950 + AUGCACCAGGACGAUUCAC 19 5696 myoC-2163 + GAUGCACCAGGACGAUUCAC 20 2269 myoC-5951 + AG AUGCACCAGG ACG AU UCAC 21 5697 myoC-5952 + CAG AUGCACCAGGACGAUUCAC 22 5698 myoC-5953 + UCAGAUGCACCAGGACGAUUCAC 23 5699 myoC-5954 + CUCAGAUGCACCAGGACGAUUCAC 24 5700 myoC-5955 + AGUAGUUGCCCAGAAGAC 18 5701 myoC-5956 + GAGUAGUUGCCCAGAAGAC 19 5702 myoC-2202 + UG AGUAGUUGCCCAGAAGAC 20 2297 myoC-5957 + GGAGGAGGCUUGGAAGAC 18 5703 myoC-5958 + AGGAGGAGGCUUGGAAGAC 19 5704 myoC-2153 + GAGGAGGAGGCUUGGAAGAC 20 2263 myoC-5959 + GG AGGAGGAGGCUUGGAAGAC 21 5705 myoC-5960 + UGG AGGAGGAGGCUUGGAAGAC 22 5706 myoC-5961 + AUGG AGGAGGAGGCUUGGAAGAC 23 5707 myoC-5962 + GAUGGAGGAGGAGGCU UGGAAGAC 24 5708 myoC-5963 + CCUGGAAUUCUCCUGGAC 18 5709 myoC-5964 + UCCUGGAAU UCUCCUGGAC 19 5710 myoC-2177 + CUCCUGGAAU UCUCCUGGAC 20 2278 myoC-5965 + CCUCCUGGAAUUCUCCUGGAC 21 5711 myoC-5966 + ACCUCCUGGAAUUCUCCUGGAC 22 5712 myoC-5967 + CACCUCCUGGAAUUCUCCUGGAC 23 5713 myoC-5968 + CCACCUCCUGGAAU UCUCCUGGAC 24 5714 myoC-5969 + AGAGAGGUUUAUAUAUAC 18 5715 myoC-5970 + CAGAGAGGU UUAUAUAUAC 19 5716 myoC-865 + CCAGAGAGGUU UAUAUAUAC 20 1195 myoC-5971 + UCCAGAGAGGU UUAUAUAUAC 21 5717 myoC-5972 + CUCCAGAGAGGUUUAUAUAUAC 22 5718 myoC-5973 + GCUCCAGAGAGGU UUAUAUAUAC 23 5719 myoC-5974 + AGCUCCAGAGAGGU UUAUAUAUAC 24 5720 myoC-5975 + G G A A A ACCC A U G C AC ACC 18 5721 myoC-5976 + AGGAAAACCCAUGCACACC 19 5722 myoC-2193 + AAGGAAAACCCAUGCACACC 20 2290 myoC-5977 + GAAGGAAAACCCAUGCACACC 21 5723 myoC-5978 + U G A AG G A A A ACCC A U G C AC ACC 22 5724 myoC-5979 + G U G A AG G A A A ACCC A U G C AC ACC 23 5725 myoC-5980 + CG U G AAG G A AAACCCAU G CACACC 24 5726 myoC-5981 + CAGGU UGCUCAGGACACC 18 5727 myoC-5982 + GCAGGU UGCUCAGGACACC 19 5728 myoC-2122 + GGCAGGUUGCUCAGGACACC 20 2240 myoC-5983 + UGGCAGGUUGCUCAGGACACC 21 5729 myoC-5984 + CUGGCAGGUUGCUCAGGACACC 22 5730 myoC-5985 + GCUGGCAGGUUGCUCAGGACACC 23 5731 myoC-5986 + GGCUGGCAGGU UGCUCAGGACACC 24 5732 myoC-5987 + CGGAAAACUCCCAGCCCC 18 5733 myoC-5988 + ACGGAAAACUCCCAGCCCC 19 5734 myoC-2183 + AACGG A A A AC UCCCAGCCCC 20 2283 myoC-5989 + CAACG GAAAACUCCCAGCCCC 21 5735 myoC-5990 + G CAACG GAAAACUCCCAGCCCC 22 5736 myoC-5991 + AG CAACG G A A A ACU CCCAGCCCC 23 5737 myoC-5992 + A AG CAACG G A A A AC U CCC AG CCCC 24 5738 myoC-5993 + UAGAAAGCAACAGGUCCC 18 5739 myoC-5994 + AUAGAAAGCAACAGGUCCC 19 5740 myoC-2126 + AAUAGAAAGCAACAGGUCCC 20 2244 myoC-5995 + AAAUAGAAAGCAACAGGUCCC 21 5741 myoC-5996 + GAAAUAGAAAGCAACAGGUCCC 22 5742 myoC-5997 + AG AAAUAGAAAGCAACAGGUCCC 23 5743 myoC-5998 + CAG AAAUAGAAAGCAACAGGUCCC 24 5744 myoC-5999 + UUUCUGGAGCCUGGAGCC 18 5745 myoC-6000 + CUU UCUGGAGCCUGGAGCC 19 5746 myoC-2168 + CCUU UCUGGAGCCUGGAGCC 20 2273 myoC-6001 + UCCU UUCUGGAGCCUGGAGCC 21 5747 myoC-6002 + U UCCUUUCUGGAGCCUGGAGCC 22 5748 myoC-6003 + U UUCCUU UCUGGAGCCUGGAGCC 23 5749 myoC-6004 + AUUUCCU UUCUGGAGCCUGGAGCC 24 5750 myoC-6005 + CAUU UCCUUUCUGGAGCC 18 5751 myoC-6006 + CCAU UUCCUU UCUGGAGCC 19 5752 myoC-1114 + UCCAU UUCCUU UCUGGAGCC 20 1414 myoC-6007 + CUCCAUUUCCUUUCUGGAGCC 21 5753 myoC-6008 + UCUCCAUU UCCUUUCUGGAGCC 22 5754 myoC-6009 + CUCUCCAU UUCCUU UCUGGAGCC 23 5755 myoC-6010 + CCUCUCCAUU UCCUUUCUGGAGCC 24 5756 myoC-6011 + U UCCGUGAAUUAACGGCC 18 5757 myoC-6012 + CUUCCGUGAAU UAACGGCC 19 5758 myoC-2199 + UCUUCCGUGAAU UAACGGCC 20 2294 myoC-6013 + U UCUUCCGUGAAUUAACGGCC 21 5759 myoC-6014 + CUUCUUCCGUGAAUUAACGGCC 22 5760 myoC-6015 + ACU UCUUCCGUGAAUUAACGGCC 23 5761 myoC-6016 + CACUUCU UCCGUGAAU UAACGGCC 24 5762 myoC-6017 + GGAGAGGAAACCUCUGCC 18 5763 myoC-6018 + UGGAGAGGAAACCUCUGCC 19 5764 myoC-749 + CUGGAGAGGAAACCUCUGCC 20 1110 myoC-6019 + GCUGGAGAGGAAACCUCUGCC 21 5765 myoC-6020 + AGCUGGAGAGGAAACCUCUGCC 22 5766 myoC-6021 + CAGCUGGAGAGGAAACCUCUGCC 23 5767 myoC-6022 + CCAGCUGGAGAGGAAACCUCUGCC 24 5768 myoC-6023 + UGAGAAACUGUCACCUCC 18 5769 myoC-6024 + AUGAGAAACUGUCACCUCC 19 5770 myoC-2135 + CAUGAGAAACUGUCACCUCC 20 2253 myoC-6025 + CCAUGAGAAACUGUCACCUCC 21 5771 myoC-6026 + UCCAUGAGAAACUGUCACCUCC 22 5772 myoC-6027 + U UCCAUGAGAAACUGUCACCUCC 23 5773 myoC-6028 + CUUCCAUGAGAAACUGUCACCUCC 24 5774 myoC-3291 + UGGUGGAGGAGGCUCUCC 18 3037 myoC-3292 + U UGGUGGAGGAGGCUCUCC 19 3038 myoC-222 + AU UGGUGGAGGAGGCUCUCC 20 608 myoC-3293 + AAUUGGUGGAGGAGGCUCUCC 21 3039 myoC-3294 + CAAUUGGUGGAGGAGGCUCUCC 22 3040 myoC-3295 + UCAAU UGGUGGAGGAGGCUCUCC 23 3041 myoC-3296 + GUCAAUUGGUGGAGGAGGCUCUCC 24 3042 myoC-3297 + AGCCCCUCCUGGGUCUCC 18 3043 myoC-3298 + CAGCCCCUCCUGGGUCUCC 19 3044 myoC-119 + GCAGCCCCUCCUGGGUCUCC 20 518 myoC-3299 + UGCAGCCCCUCCUGGGUCUCC 21 3045 myoC-3300 + CUGCAGCCCCUCCUGGG UCUCC 22 3046 myoC-3301 + UCUGCAGCCCCUCCUGGGUCUCC 23 3047 myoC-3302 + CUCUGCAGCCCCUCCUGGGUCUCC 24 3048 myoC-6029 + U UCUUCUGCACGUCUUCC 18 5775 myoC-6030 + U UUCUUCUGCACG UCUUCC 19 5776 myoC-2137 + UU UUCUUCUGCACGUCUUCC 20 2255 myoC-6031 + AUUUUCU UCUGCACGUCUUCC 21 5777 myoC-6032 + AAUUUUCUUCUGCACGUCUUCC 22 5778 myoC-6033 + UAAUUU UCUUCUGCACGUCUUCC 23 5779 myoC-6034 + U UAAUU UUCUUCUGCACGUCUUCC 24 5780 myoC-6035 + UUGCAGGGCUCCCCCAGC 18 5781 myoC-6036 + CU UGCAGGGCUCCCCCAGC 19 5782 myoC-746 + GCU UGCAGGGCUCCCCCAGC 20 1012 myoC-6037 + UGCUUGCAGGGCUCCCCCAGC 21 5783 myoC-6038 + GUGCUUGCAGGGCUCCCCCAGC 22 5784 myoC-6039 + GGUGCUUGCAGGGCUCCCCCAGC 23 5785 myoC-6040 + GGGUGCUUGCAGGGCUCCCCCAGC 24 5786 myoC-6041 + AG A A A A A UAACAGCCAGC 18 5787 myoC-6042 + G AG A A AAA UAACAGCCAGC 19 5788 myoC-2313 + AGAGAAAAAUAACAGCCAGC 20 2382 myoC-6043 + C AG AG A A A A A U A AC AG CC AG C 21 5789 myoC-6044 + ACAGAGAAAAAUAACAGCCAGC 22 5790 myoC-6045 + G AC AG AG A A A A A U A AC AG CC AG C 23 5791 myoC-6046 + G G AC AG AG A A A A A U A AC AG CC AG C 24 5792 myoC-6047 + GGGCACGAUGGAGGCAGC 18 5793 myoC-6048 + CGGGCACGAUGGAGGCAGC 19 5794 myoC-713 + CCGGGCACGAUGGAGGCAGC 20 1102 myoC-6049 + UCCGGGCACGAUGGAGGCAGC 21 5795 myoC-6050 + CUCCGGGCACGAUGGAGGCAGC 22 5796 myoC-6051 + CCUCCGGGCACGAUGGAGGCAGC 23 5797 myoC-6052 + GCCUCCGGGCACGAUGGAGGCAGC 24 5798 myoC-6053 + CCAUUUCCUUUCUGGAGC 18 5799 myoC-6054 + UCCAUU UCCUUUCUGGAGC 19 5800 myoC-2170 + CUCCAU UUCCUU UCUGGAGC 20 2274 myoC-6055 + UCUCCAUUUCCU UUCUGGAGC 21 5801 myoC-6056 + CUCUCCAUU UCCUUUCUGGAGC 22 5802 myoC-6057 + CCUCUCCAU UUCCUU UCUGGAGC 23 5803 myoC-6058 + CCCUCUCCAUU UCCU UUCUGGAGC 24 5804 myoC-6059 + AGUCCUUUAAGACG UAGC 18 5805 myoC-6060 + AAGUCCUUUAAGACGUAGC 19 5806 myoC-893 + CAAGUCCU UUAAGACGUAGC 20 1187 myoC-6061 + ACAAG U CCU U UAAGACG UAGC 21 5807 myoC-6062 + AACAAGUCCUUUAAGACGUAGC 22 5808 myoC-6063 + A A AC A AG UCCU UUAAGACGUAGC 23 5809 myoC-6064 + CAAACAAGUCCUUUAAGACGUAGC 24 5810 myoC-6065 + GGAGGCAGCAGGGGGCGC 18 5811 myoC-6066 + UGGAGGCAGCAGGGGGCGC 19 5812 myoC-2143 + AUGGAGGCAGCAGGGGGCGC 20 2258 myoC-6067 + GAUGGAGGCAGCAGGGGGCGC 21 5813 myoC-6068 + CGAUGGAGGCAGCAGGGGGCGC 22 5814 myoC-6069 + ACG AUGGAGGCAGCAGGGGGCGC 23 5815 myoC-6070 + CACGAUGGAGGCAGCAGGGGGCGC 24 5816 myoC-3303 + A U CCC AC ACC AG G C AG G C 18 3049 myoC-3304 + CAUCCCACACCAGGCAGGC 19 3050 myoC-1668 + ACAUCCCACACCAGGCAGGC 20 1930 myoC-3305 + CACAU CCCACACCAG G CAGG C 21 3051 myoC-3306 + CCAC AU CCCACACCAGG C AG G C 22 3052 myoC-3307 + CCCACAUCCCACACCAGGCAGGC 23 3053 myoC-3308 + CCCCACAUCCCACACCAGGCAGGC 24 3054 myoC-6071 + ACUGAUGGAGGAGGAGGC 18 5817 myoC-6072 + GACUGAUGGAGGAGGAGGC 19 5818 myoC-2155 + UGACUGAUGGAGGAGGAGGC 20 2264 myoC-6073 + GUGACUGAUGGAGGAGGAGGC 21 5819 myoC-6074 + UGUG ACUGAUGGAGGAGGAGGC 22 5820 myoC-6075 + CUG UGACUGAUGGAGGAGGAGGC 23 5821 myoC-6076 + GCUGUGACUGAUGGAGGAGGAGGC 24 5822 myoC-6077 + GGCU UGGAAGACUCGGGC 18 5823 myoC-6078 + AGGCUUGGAAGACUCGGGC 19 5824 myoC-2152 + GAGGCUUGGAAGACUCGGGC 20 2262 myoC-6079 + GG AGGCUUGGAAGACUCGGGC 21 5825 myoC-6080 + AGG AGGCUUGGAAGACUCGGGC 22 5826 myoC-6081 + GAGG AGGCU UGGAAGACUCGGGC 23 5827 myoC-6082 + GGAGGAGGCUUGGAAGACUCGGGC 24 5828 myoC-6083 + A AC A A A AC A ACC AG U G G C 18 5829 myoC-6084 + U A AC A A A AC A ACC AG U G G C 19 5830 myoC-2124 + AUAACAAAACAACCAGUGGC 20 2242 myoC-6085 + G AU AACAAAACAACCAG UGGC 21 5831 myoC-6086 + UG AUAACAAAACAACCAGUGGC 22 5832 myoC-6087 + G U G AU A AC A A A AC A ACC AG UGGC 23 5833 myoC-6088 + AG UG AUAACAAAACAACCAGUGGC 24 5834 myoC-6089 + GGCCUUGCUGGCUCAUGC 18 5835 myoC-6090 + UGGCCUUGCUGGCUCAUGC 19 5836 myoC-2351 + GUGGCCU UGCUGGCUCAUGC 20 2405 myoC-6091 + GGUGGCCU UGCUGGCUCAUGC 21 5837 myoC-6092 + GGGUGGCCUUGCUGGCUCAUGC 22 5838 myoC-6093 + UGGGUGGCCUUGCUGGCUCAUGC 23 5839 myoC-6094 + AUGGGUGGCCUUGCUGGCUCAUGC 24 5840 myoC-6095 + CUGUGCCAGGCACUAUGC 18 5841 myoC-6096 + ACUGUGCCAGGCACUAUGC 19 5842 myoC-2321 + CACUGUGCCAGGCACUAUGC 20 2387 myoC-6097 + GCACUGUGCCAGGCACUAUGC 21 5843 myoC-6098 + UGCACUGUGCCAGGCACUAUGC 22 5844 myoC-6099 + CUGCACUGUGCCAGGCACUAUGC 23 5845 myoC-6100 + CCUGCACUG UGCCAGGCACUAUGC 24 5846 myoC-6101 + UGGAGAGGAAACCUCUGC 18 5847 myoC-6102 + CUGGAGAGGAAACCUCUGC 19 5848 myoC-748 + GCUGGAGAGGAAACCUCUGC 20 1010 myoC-6103 + AGCUGGAGAGGAAACCUCUGC 21 5849 myoC-6104 + CAGCUGGAGAGGAAACCUCUGC 22 5850 myoC-6105 + CCAGCUGGAGAGGAAACCUCUGC 23 5851 myoC-6106 + CCCAGCUGGAGAGGAAACCUCUGC 24 5852 myoC-6107 + CCCUGCAGUCCCCACCUC 18 5853 myoC-6108 + UCCCUGCAGUCCCCACCUC 19 5854 myoC-2180 + CUCCCUGCAGUCCCCACCUC 20 2280 myoC-6109 + ACUCCCUGCAGUCCCCACCUC 21 5855 myoC-6110 + CACUCCCUGCAGUCCCCACCUC 22 5856 myoC-6111 + CCACUCCCUGCAGUCCCCACCUC 23 5857 myoC-6112 + CCCACUCCCUGCAGUCCCCACCUC 24 5858 myoC-3309 + GCUUGGUGAGGCUUCCUC 18 3055 myoC-3310 + GGCU UGGUGAGGCUUCCUC 19 3056 myoC-2356 + AGGCUUGGUGAGGCUUCCUC 20 2410 myoC-3311 + GAGGCUUGGUGAGGCU UCCUC 21 3057 myoC-3312 + AGAGGCUUGGUGAGGCUUCCUC 22 3058 myoC-3313 + CAGAGGCU UGGUGAGGCUUCCUC 23 3059 myoC-3314 + GCAGAGGCUUGGUGAGGCUUCCUC 24 3060 myoC-3315 + UCGCUUCUUCUCUUCCUC 18 3061 myoC-3316 + GUCGCUUCUUCUCUUCCUC 19 3062 myoC-1696 + AGUCGCUUCUUCUCUUCCUC 20 1950 myoC-3317 + UAGUCGCUUCUUCUCU UCCUC 21 3063 myoC-3318 + UUAGUCGCU UCUUCUCUUCCUC 22 3064 myoC-3319 + CUUAGUCGCUUCUUCUCUUCCUC 23 3065 myoC-3320 + CCUUAGUCGCUUCUUCUCU UCCUC 24 3066 myoC-6113 + UGGCUCAUGCCCGAGCUC 18 5859 myoC-6114 + CUGGCUCAUGCCCGAGCUC 19 5860 myoC-2350 + GCUGGCUCAUGCCCGAGCUC 20 2404 myoC-6115 + UGCUGGCUCAUGCCCGAGCUC 21 5861 myoC-6116 + UUGCUGGCUCAUGCCCGAGCUC 22 5862 myoC-6117 + CU UGCUGGCUCAUGCCCGAGCUC 23 5863 myoC-6118 + CCUUGCUGGCUCAUGCCCGAGCUC 24 5864 myoC-3321 + U UGGUGGAGGAGGCUCUC 18 3067 myoC-3322 + AUUGGUGGAGGAGGCUCUC 19 3068 myoC-1682 + AAUUGGUGGAGGAGGCUCUC 20 1941 myoC-3323 + CAAUUGGUGGAGGAGGCUCUC 21 3069 myoC-3324 + UCAAU UGGUGGAGGAGGCUCUC 22 3070 myoC-3325 + GUCAAUUGGUGGAGGAGGCUCUC 23 3071 myoC-3326 + GGUCAAUUGGUGGAGGAGGCUCUC 24 3072 myoC-3327 + CAGCCCCUCCUGGGUCUC 18 3073 myoC-3328 + GCAGCCCCUCCUGGGUCUC 19 3074 myoC-1688 + UGCAGCCCCUCCUGGGUCUC 20 1944 myoC-3329 + CUGCAGCCCCUCCUGGGUCUC 21 3075 myoC-3330 + UCUGCAGCCCCUCCUGGGUCUC 22 3076 myoC-3331 + CUCUGCAGCCCCUCCUGGG UCUC 23 3077 myoC-3332 + CCUCUGCAGCCCCUCCUGGGUCUC 24 3078 myoC-6119 + CCACCUCCUGGAAUUCUC 18 5865 myoC-6120 + CCCACCUCCUGGAAUUCUC 19 5866 myoC-2178 + CCCCACCUCCUGGAAUUCUC 20 2279 myoC-6121 + UCCCCACCUCCUGG AAU UCUC 21 5867 myoC-6122 + GUCCCCACCUCCUGGAAU UCUC 22 5868 myoC-6123 + AGUCCCCACCUCCUGGAAUUCUC 23 5869 myoC-6124 + CAGUCCCCACCUCCUGGAAUUCUC 24 5870 myoC-3333 + CUCCAGAACUGACUUGUC 18 3079 myoC-3334 + CCUCCAGAACUGACUUGUC 19 3080 myoC-1695 + UCCUCCAGAACUGACUUGUC 20 1949 myoC-3335 + U UCCUCCAGAACUGACU UGUC 21 3081 myoC-3336 + CUUCCUCCAGAACUGACU UGUC 22 3082 myoC-3337 + UCU UCCUCCAGAACUGACU UGUC 23 3083 myoC-3338 + CUCU UCCUCCAGAACUGACUUGUC 24 3084 myoC-6125 + G AUGCACCAGG ACG AU UC 18 5871 myoC-6126 + AGAUGCACCAGGACGAUUC 19 5872 myoC-2165 + CAG AUGCACCAGG ACGAU UC 20 2271 myoC-6127 + UCAG AUGCACCAGG ACG AUUC 21 5873 myoC-6128 + CUCAGAUGCACCAGGACGAUUC 22 5874 myoC-6129 + GCUCAG AUGCACCAGG ACG AUUC 23 5875 myoC-6130 + AGCUCAGAUGCACCAGGACGAUUC 24 5876 myoC-6131 + UCU UAGAAAAUAACCUUC 18 5877 myoC-6132 + UUCUUAGAAAAUAACCU UC 19 5878 myoC-2329 + AUUCUUAGAAAAUAACCUUC 20 2394 myoC-6133 + GAUUCUUAGAAAAUAACCUUC 21 5879 myoC-6134 + AGAUUCUUAGAAAAUAACCUUC 22 5880 myoC-6135 + AAG AUUCUUAGAAAAUAACCUUC 23 5881 myoC-6136 + CAAGAUUCUUAGAAAAUAACCU UC 24 5882 myoC-6137 + CUGGGGAGCCAGCCCUUC 18 5883 myoC-6138 + ACUGGGGAGCCAGCCCUUC 19 5884 myoC-2344 + U ACUGGGG AGCCAGCCCU UC 20 2401 myoC-6139 + AUACUGGGGAGCCAGCCCUUC 21 5885 myoC-6140 + UAUACUGGGGAGCCAGCCCUUC 22 5886 myoC-6141 + AUAUACUGGGGAGCCAGCCCUUC 23 5887 myoC-6142 + UAUAUACUGGGGAGCCAGCCCUUC 24 5888 myoC-6143 + AUGAAACUGCAUCCCUUC 18 5889 myoC-6144 + UAUGAAACUGCAUCCCUUC 19 5890 myoC-2190 + UUAUGAAACUGCAUCCCUUC 20 2288 myoC-6145 + UUUAUGAAACUGCAUCCCUUC 21 5891 myoC-6146 + CUU UAUGAAACUGCAUCCCUUC 22 5892 myoC-6147 + ACU UUAUGAAACUGCAUCCCUUC 23 5893 myoC-6148 + GACU U U AUG AAACUGCAUCCCU UC 24 5894 myoC-6149 + CAU UAAAUAAAGGCCUUC 18 5895 myoC-6150 + CCAU U AAAU AAAGGCCU UC 19 5896 myoC-2196 + CCCAUUAAAUAAAGGCCUUC 20 2292 myoC-6151 + UCCCAUUAAAUAAAGGCCUUC 21 5897 myoC-6152 + UUCCCAUUAAAUAAAGGCCUUC 22 5898 myoC-6153 + AUUCCCAUUAAAUAAAGGCCUUC 23 5899 myoC-6154 + UAUUCCCAU UAAAUAAAGGCCUUC 24 5900 myoC-3339 + CUCUGGUCAUUGGCCU UC 18 3085 myoC-3340 + ACUCUGGUCAUUGGCCUUC 19 3086 myoC-1670 + CACUCUGGUCAUUGGCCUUC 20 1932 myoC-3341 + CCACUCUGGUCAUUGGCCUUC 21 3087 myoC-3342 + GCCACUCUGGUCAUUGGCCUUC 22 3088 myoC-3343 + GGCCACUCUGGUCAU UGGCCUUC 23 3089 myoC-3344 + CGGCCACUCUGGUCAUUGGCCUUC 24 3090 myoC-6155 + CCCUCUCCAU U UCCUUUC 18 5901 myoC-6156 + UCCCUCUCCAU UUCCUU UC 19 5902 myoC-1113 + UUCCCUCUCCAUUUCCU UUC 20 1413 myoC-6157 + UUUCCCUCUCCAUUUCCUUUC 21 5903 myoC-6158 + GUUUCCCUCUCCAUUUCCU UUC 22 5904 myoC-6159 + AGUUUCCCUCUCCAUU UCCUUUC 23 5905 myoC-6160 + UAGUU UCCCUCUCCAUU UCCUUUC 24 5906 myoC-6161 + GACU UCUUCUCCUCCAAG 18 5907 myoC-6162 + AGACUUCUUCUCCUCCAAG 19 5908 myoC-2189 + UAGACU UCUUCUCCUCCAAG 20 2287 myoC-6163 + AUAGACUUCUUCUCCUCCAAG 21 5909 myoC-6164 + AAUAGACUUCUUCUCCUCCAAG 22 5910 myoC-6165 + AAAUAGACUUCUUCUCCUCCAAG 23 5911 myoC-6166 + GAAAUAGACU UCUUCUCCUCCAAG 24 5912 myoC-3345 + CUGCAGCAACGUGCACAG 18 3091 myoC-3346 + GCUGCAGCAACGUGCACAG 19 3092 myoC-1665 + AG CU G C AG CAACG U G CACAG 20 1927 myoC-3347 + AAGCUGCAG CAACG U G CACAG 21 3093 myoC-3348 + AAAGCUGCAGCAACGUGCACAG 22 3094 myoC-3349 + C A A AG C U G C AG CAACG U G CACAG 23 3095 myoC-3350 + CC AA AG C U G C AG CAACG U G CACAG 24 3096 myoC-6167 + CUUGCAGGGCUCCCCCAG 18 5913 myoC-6168 + GCUUGCAGGGCUCCCCCAG 19 5914 myoC-2119 + UGCUUGCAGGGCUCCCCCAG 20 2237 myoC-6169 + GUGCUUGCAGGGCUCCCCCAG 21 5915 myoC-6170 + GGUGCUUGCAGGGCUCCCCCAG 22 5916 myoC-6171 + GGGUGCUUGCAGGGCUCCCCCAG 23 5917 myoC-6172 + CGGGUGCU UGCAGGGCUCCCCCAG 24 5918 myoC-3351 + GCAGGCCAGAAGCAGCAG 18 3097 myoC-3352 + GGCAGGCCAGAAGCAGCAG 19 3098 myoC-1667 + AGGCAGGCCAGAAGCAGCAG 20 1929 myoC-3353 + C AG G C AG G CC AG A AG C AG C AG 21 3099 myoC-3354 + CC AG G C AG G CC AG A AG C AG C AG 22 3100 myoC-3355 + ACC AG G C AG G CC AG A AG C AG C AG 23 3101 myoC-3356 + C ACC AG G C AG G CC AG A AG C AG C AG 24 3102 myoC-6173 + CGGGCACGAUGGAGGCAG 18 5919 myoC-6174 + CCGGGCACGAUGGAGGCAG 19 5920 myoC-2146 + UCCGGGCACGAUGGAGGCAG 20 2259 myoC-6175 + CUCCGGGCACGAUGGAGGCAG 21 5921 myoC-6176 + CCUCCGGGCACGAUGGAGGCAG 22 5922 myoC-6177 + GCCUCCGGGCACGAUGGAGGCAG 23 5923 myoC-6178 + GGCCUCCGGGCACGAUGGAGGCAG 24 5924 myoC-6179 + GCGCUGUGACUGAUGGAG 18 5925 myoC-6180 + AGCGCUGUGACUGAUGGAG 19 5926 myoC-2157 + CAGCGCUGUGACUGAUGGAG 20 2265 myoC-6181 + GCAGCGCUGUGACUGAUGGAG 21 5927 myoC-6182 + UGCAGCGCUGUGACUGAUGGAG 22 5928 myoC-6183 + CUGCAGCGCUGUGACUGAUGGAG 23 5929 myoC-6184 + GCUGCAGCGCUGUGACUGAUGGAG 24 5930 myoC-6185 + GGGCUCCCCCAGCUGGAG 18 5931 myoC-6186 + AGGGCUCCCCCAGCUGGAG 19 5932 myoC-747 + CAGGGCUCCCCCAGCUGGAG 20 1099 myoC-6187 + GCAGGGCUCCCCCAGCUGGAG 21 5933 myoC-6188 + UGCAGGGCUCCCCCAGCUGGAG 22 5934 myoC-6189 + UUGCAGGGCUCCCCCAGCUGGAG 23 5935 myoC-6190 + CU UGCAGGGCUCCCCCAGCUGGAG 24 5936 myoC-3357 + GUCAUUGGCCUUCCUGAG 18 3103 myoC-3358 + GGUCAUUGGCCUUCCUGAG 19 3104 myoC-1669 + UGGUCAUUGGCCUUCCUGAG 20 1931 myoC-3359 + CUGG UCAUUGGCCU UCCUGAG 21 3105 myoC-3360 + UCUGGUCAU UGGCCUUCCUGAG 22 3106 myoC-3361 + CUCUGGUCAUUGGCCUUCCUGAG 23 3107 myoC-3362 + ACUCUGGUCAUUGGCCU UCCUGAG 24 3108 myoC-3363 + GCUCUCCAGGGAGCUGAG 18 3109 myoC-3364 + GGCUCUCCAGGGAGCUGAG 19 3110 myoC-1678 + AGGCUCUCCAGGGAGCUGAG 20 1939 myoC-3365 + GAGGCUCUCCAGGGAGCUGAG 21 3111 myoC-3366 + GGAGGCUCUCCAGGGAGCUGAG 22 3112 myoC-3367 + AGGAGGCUCUCCAGGGAGCUGAG 23 3113 myoC-3368 + GAGGAGGCUCUCCAGGGAGCUGAG 24 3114 myoC-6191 + AAG U CCU UUAAGACG U AG 18 5937 myoC-6192 + CAAGUCCUUUAAGACGUAG 19 5938 myoC-2317 + ACAAG U CCU U U AAG ACG U AG 20 2385 myoC-6193 + A AC A AG UCCU UUAAGACGUAG 21 5939 myoC-6194 + AAACAAGUCCUUUAAGACGUAG 22 5940 myoC-6195 + CAA ACAAG U CCU U U AAG ACG U AG 23 5941 myoC-6196 + CCAAACAAG UCCU U U AAG ACG U AG 24 5942 myoC-6197 + UGGGGGCCUCCGGGCACG 18 5943 myoC-6198 + U UGGGGGCCUCCGGGCACG 19 5944 myoC-2148 + CUUGGGGGCCUCCGGGCACG 20 2260 myoC-6199 + GCU UGGGGGCCUCCGGGCACG 21 5945 myoC-6200 + GGCU UGGGGGCCUCCGGGCACG 22 5946 myoC-6201 + GGGCU UGGGGGCCUCCGGGCACG 23 5947 myoC-6202 + CGGGCUUGGGGGCCUCCGGGCACG 24 5948 myoC-6203 + CUGGAAUUCUCCUGGACG 18 5949 myoC-6204 + CCUGGAAUUCUCCUGGACG 19 5950 myoC-1110 + UCCUGGAAUUCUCCUGGACG 20 1410 myoC-6205 + CUCCUGGAAU UCUCCUGGACG 21 5951 myoC-6206 + CCUCCUGGAAUUCUCCUGGACG 22 5952 myoC-6207 + ACCUCCUGGAAU UCUCCUGGACG 23 5953 myoC-6208 + CACCUCCUGGAAUUCUCCUGGACG 24 5954 myoC-3369 + CAGAACUGACUUGUCUCG 18 3115 myoC-3370 + CCAGAACUGACUUGUCUCG 19 3116 myoC-1693 + UCCAGAACUGACU UGUCUCG 20 1948 myoC-3371 + CUCCAGAACUGACU UGUCUCG 21 3117 myoC-3372 + CCUCCAGAACUGACUUGUCUCG 22 3118 myoC-3373 + UCCUCCAGAACUGACUUGUCUCG 23 3119 myoC-3374 + U UCCUCCAGAACUGACUUGUCUCG 24 3120 myoC-6209 + CUGUCACCUCCACGAAGG 18 5955 myoC-6210 + ACU G U C ACC U CCACG A AG G 19 5956 myoC-2134 + AACUG U CACCU CCACG AAGG 20 2252 myoC-6211 + AAACUGUCACCUCCACGAAGG 21 5957 myoC-6212 + GAAACUGUCACCUCCACGAAGG 22 5958 myoC-6213 + AGAAACUGUCACCUCCACGAAGG 23 5959 myoC-6214 + GAGAAACUGUCACCUCCACGAAGG 24 5960 myoC-6215 + CGCUGUGACUGAUGGAGG 18 5961 myoC-6216 + GCGCUGUGACUGAUGGAGG 19 5962 myoC-700 + AGCGCUGUGACUGAUGGAGG 20 1088 myoC-6217 + CAGCGCUGUGACUGAUGGAGG 21 5963 myoC-6218 + GCAGCGCUGUGACUGAUGGAGG 22 5964 myoC-6219 + UGCAGCGCUGUGACUGAUGGAGG 23 5965 myoC-6220 + CUGCAGCGCUGUGACUGAUGGAGG 24 5966 myoC-3375 + AGAACUGACUUGUCUCGG 18 3121 myoC-3376 + CAGAACUGACU UGUCUCGG 19 3122 myoC-209 + CCAGAACUGACUUGUCUCGG 20 595 myoC-3377 + UCCAGAACUGACUUGUCUCGG 21 3123 myoC-3378 + CUCCAGAACUGACU UGUCUCGG 22 3124 myoC-3379 + CCUCCAGAACUGACUUG UCUCGG 23 3125 myoC-3380 + UCCUCCAGAACUGACUUGUCUCGG 24 3126 myoC-6221 + UGGCCACGUGAGGCUGGG 18 5967 myoC-6222 + GUGGCCACGUGAGGCUGGG 19 5968 myoC-877 + GGUGGCCACGUGAGGCUGGG 20 1053 myoC-6223 + AGG UGGCCACGUGAGGCUGGG 21 5969 myoC-6224 + GAGG UGGCCACGUGAGGCUGGG 22 5970 myoC-6225 + AG AGG UGGCCACGUGAGGCUGGG 23 5971 myoC-6226 + CAGAGGUGGCCACGUGAGGCUGGG 24 5972 myoC-6227 + GGAGCCAGCCCU UCAUGG 18 5973 myoC-6228 + GGGAGCCAGCCCU UCAUGG 19 5974 myoC-871 + GGGGAGCCAGCCCUUCAUGG 20 992 myoC-6229 + UGGGGAGCCAGCCCUUCAUGG 21 5975 myoC-6230 + CUGGGGAGCCAGCCCUUCAUGG 22 5976 myoC-6231 + ACUGGGGAGCCAGCCCU UCAUGG 23 5977 myoC-6232 + UACUGGGGAGCCAGCCCUUCAUGG 24 5978 myoC-6233 + CAGCGCUGUGACUGAUGG 18 5979 myoC-6234 + GCAGCGCUGUGACUGAUGG 19 5980 myoC-699 + UGCAGCGCUGUGACUGAUGG 20 1118 myoC-6235 + CUGCAGCGCUGUGACUGAUGG 21 5981 myoC-6236 + GCUGCAGCGCUGUGACUGAUGG 22 5982 myoC-6237 + AGCU GCAGCGCUGUGACUGAUGG 23 5983 myoC-6238 + CAGCUGCAGCGCUGUGACUGAUGG 24 5984 myoC-6239 + GUGGCCACG UGAGGCUGG 18 5985 myoC-6240 + GGUGGCCACGUGAGGCUGG 19 5986 myoC-2336 + AGGUGGCCACGUGAGGCUGG 20 2397 myoC-6241 + GAGGUGGCCACGUGAGGCUGG 21 5987 myoC-6242 + AG AGGUGGCCACGUGAGGCUGG 22 5988 myoC-6243 + CAGAGGUGGCCACGUGAGGCUGG 23 5989 myoC-6244 + ACAGAGGUGGCCACGUGAGGCUGG 24 5990 myoC-3381 + UCCAAGGUCAAU UGGUGG 18 3127 myoC-3382 + GUCCAAGGUCAAU UGGUGG 19 3128 myoC-121 + GG UCCAAGGUCAAUUGGUGG 20 520 myoC-3383 + UGGUCCAAGGUCAAU UGGUGG 21 3129 myoC-3384 + CUGG UCCAAGGUCAAUUGGUGG 22 3130 myoC-3385 + CCUGGUCCAAGGUCAAUUGGUGG 23 3131 myoC-3386 + GCCUGGUCCAAGGUCAAUUGGUGG 24 3132 myoC-3387 + UGGUCCAAGGUCAAUUGG 18 3133 myoC-3388 + CUGGUCCAAGGUCAAUUGG 19 3134 myoC-220 + CCUGGUCCAAGGUCAAU UGG 20 606 myoC-3389 + GCCUGGUCCAAGGUCAAU UGG 21 3135 myoC-3390 + AGCCUGGUCCAAGGUCAAUUGG 22 3136 myoC-3391 + CAGCCUGGU CCA AG G U C A A U U G G 23 3137 myoC-3392 + GCAGCCUGGUCCAAGGUCAAUUGG 24 3138 myoC-6245 + GGGAGCCAGCCCU UCAUG 18 5991 myoC-6246 + GGGGAGCCAGCCCUUCAUG 19 5992 myoC-870 + UGGGGAGCCAGCCCUUCAUG 20 1213 myoC-6247 + CUGGGGAGCCAGCCCUUCAUG 21 5993 myoC-6248 + ACUGGGG AGCCAGCCCU UCAUG 22 5994 myoC-6249 + UACUGGGGAGCCAGCCCUUCAUG 23 5995 myoC-6250 + AUACUGGGGAGCCAGCCCUUCAUG 24 5996 myoC-6251 + GCAGCGCUG UGACUGAUG 18 5997 myoC-6252 + UGCAGCGCUGUGACUGAUG 19 5998 myoC-2159 + CUGCAGCGCUGUGACUGAUG 20 2266 myoC-6253 + GCUGCAGCGCUGUGACUGAUG 21 5999 myoC-6254 + AGCUGCAGCGCUGUGACUGAUG 22 6000 myoC-6255 + CAGCUGCAGCGCUGUGACUGAUG 23 6001 myoC-6256 + CCAGCUGCAGCGCUG UGACUGAUG 24 6002 myoC-6257 + GCUGCAGCGCUGUGACUG 18 6003 myoC-6258 + AGCUGCAGCGCUGUGACUG 19 6004 myoC-2161 + CAGCUGCAGCGCUGUGACUG 20 2267 myoC-6259 + CCAGCUGCAGCGCUGUGACUG 21 6005 myoC-6260 + GCCAGCUGCAGCGCUGUGACUG 22 6006 myoC-6261 + GGCCAGCUGCAGCGCUGUGACUG 23 6007 myoC-6262 + AGGCCAGCUGCAGCGCUGUGACUG 24 6008 myoC-6263 + AGAGGUUUAUAUAUACUG 18 6009 myoC-6264 + GAGAGGUU UAUAUAUACUG 19 6010 myoC-867 + AG AGAGGUUUAUAUAUACUG 20 1180 myoC-6265 + CAGAGAGGU UUAUAUAUACUG 21 6011 myoC-6266 + CCAGAGAGGUUUAUAUAUACUG 22 6012 myoC-6267 + UCCAGAGAGGUU UAUAUAUACUG 23 6013 myoC-6268 + CUCCAGAGAGGU UUAUAUAUACUG 24 6014 myoC-6269 + GCAGGGCUCCCCCAGCUG 18 6015 myoC-6270 + UGCAGGGCUCCCCCAGCUG 19 6016 myoC-2117 + U UGCAGGGCUCCCCCAGCUG 20 2236 myoC-6271 + CUUGCAGGGCUCCCCCAGCUG 21 6017 myoC-6272 + GCU UGCAGGGCUCCCCCAGCUG 22 6018 myoC-6273 + UGCU UGCAGGGCUCCCCCAGCUG 23 6019 myoC-6274 + GUGCU UGCAGGGCUCCCCCAGCUG 24 6020 myoC-6275 + CUGGAGAGGAAACCUCUG 18 6021 myoC-6276 + GCUGGAGAGGAAACCUCUG 19 6022 myoC-2114 + AGCUGGAGAGGAAACCUCUG 20 2234 myoC-6277 + CAGCUGGAGAGGAAACCUCUG 21 6023 myoC-6278 + CCAGCUGGAGAGGAAACCUCUG 22 6024 myoC-6279 + CCCAGCUGGAGAGGAAACCUCUG 23 6025 myoC-6280 + CCCCAGCUGGAGAGGAAACCUCUG 24 6026 myoC-6281 + GAGGCCCCUU UCCCUCUG 18 6027 myoC-6282 + GGAGGCCCCU UUCCCUCUG 19 6028 myoC-1112 + UGGAGGCCCCU UUCCCUCUG 20 1412 myoC-6283 + GUGGAGGCCCCUUUCCCUCUG 21 6029 myoC-6284 + CGUGGAGGCCCCUU UCCCUCUG 22 6030 myoC-6285 + ACGUGGAGGCCCCUUUCCCUCUG 23 6031 myoC-6286 + GACGUGGAGGCCCCUUUCCCUCUG 24 6032 myoC-6287 + UAAAUAAAGGCCUUCGUG 18 6033 myoC-6288 + U UAAAUAAAGGCCUUCGUG 19 6034 myoC-2195 + AU UAAAUAAAGGCCUUCGUG 20 2291 myoC-6289 + CAU UAAAUAAAGGCCUUCGUG 21 6035 myoC-6290 + CCAU UAAAUAAAGGCCU UCGUG 22 6036 myoC-6291 + CCCAUUAAAUAAAGGCCUUCGUG 23 6037 myoC-6292 + UCCCAU UAAAUAAAGGCCU UCGUG 24 6038 myoC-3393 + GUCCAAGGUCAAUUGG UG 18 3139 myoC-3394 + GGUCCAAGGUCAAUUGGUG 19 3140 myoC-1684 + UGGUCCAAGGUCAAU UGGUG 20 1942 myoC-3395 + CUGGUCCAAGGUCAAUUGGUG 21 3141 myoC-3396 + CCUGGUCCAAGGUCAAU UGGUG 22 3142 myoC-3397 + GCCUGGUCCAAGGUCAAUUGGUG 23 3143 myoC-3398 + AGCCUGGUCCAAGGUCAAUUGGUG 24 3144 myoC-6293 + CUGGAAAGCUCUGCUGUG 18 6039 myoC-6294 + UCUGGAAAGCUCUGCUGUG 19 6040 myoC-2355 + CUCUGGAAAGCUCUGCUGUG 20 2409 myoC-6295 + CCUCUGGAAAGCUCUGCUGUG 21 6041 myoC-6296 + UCCUCUGGAAAGCUCUGCUGUG 22 6042 myoC-6297 + U UCCUCUGGAAAGCUCUGCUGUG 23 6043 myoC-6298 + CUUCCUCUGGAAAGCUCUGCUGUG 24 6044 myoC-3399 + CUGGUCCAAGGUCAAUUG 18 3145 myoC-3400 + CCUGGUCCAAGGUCAAU UG 19 3146 myoC-1686 + GCCUGGUCCAAGGUCAAU UG 20 1943 myoC-3401 + AGCCUGGUCCAAGGUCAAUUG 21 3147 myoC-3402 + CAGCCUGGU CCA AG G U C A AU U G 22 3148 myoC-3403 + GCAGCCUGGUCCAAGGUCAAUUG 23 3149 myoC-3404 + GGCAGCCUGGUCCAAGGUCAAUUG 24 3150 myoC-3405 + CACAGAAGAACCUCAUUG 18 3151 myoC-3406 + GCACAG AAG AACCUCAU UG 19 3152 myoC-1664 + UGCACAGAAGAACCUCAUUG 20 1926 myoC-3407 + GU GCACAG AAG AACCU CAU UG 21 3153 myoC-3408 + CGUGCACAG AAG AACCUCAU UG 22 3154 myoC-3409 + ACG UGCACAGAAGAACCUCAUUG 23 3155 myoC-3410 + AACG UGCACAGAAGAACCUCAUUG 24 3156 myoC-3411 + CCUCAUUGCAGAGGCUUG 18 3157 myoC-3412 + ACCUCAU UGCAG AGGCU UG 19 3158 myoC-1663 + AACCUCAUUGCAGAGGCUUG 20 1925 myoC-3413 + GAACCUCAU UGCAG AGGCU UG 21 3159 myoC-3414 + AG AACCUCAU UGCAGAGGCUUG 22 3160 myoC-3415 + AAG AACCUCAUUGCAGAGGCUUG 23 3161 myoC-3416 + GAAGAACCUCAUUGCAGAGGCUUG 24 3162 myoC-6299 + CAGGACCCCGGGUGCUUG 18 6045 myoC-6300 + CCAGGACCCCGGGUGCU UG 19 6046 myoC-2120 + CCCAGGACCCCGGGUGCUUG 20 2238 myoC-6301 + ACCCAGGACCCCGGGUGCU UG 21 6047 myoC-6302 + CACCCAGGACCCCGGGUGCU UG 22 6048 myoC-6303 + ACACCCAGGACCCCGGG UGCUUG 23 6049 myoC-6304 + GACACCCAGGACCCCGGGUGCUUG 24 6050 myoC-6305 + GUGAACAACACUGAACAU 18 6051 myoC-6306 + CGUGAACAACACUGAACAU 19 6052 myoC-2181 + CCG U G A AC A AC AC U G A AC A U 20 2281 myoC-6307 + CCCGUGAACAACACUGAACAU 21 6053 myoC-6308 + CCCCGUGAACAACACUGAACAU 22 6054 myoC-6309 + GCCCCGUGAACAACACUGAACAU 23 6055 myoC-6310 + AG CCCCG U G A AC AACAC U G A ACAU 24 6056 myoC-6311 + CUUCUGCACGUCUUCCAU 18 6057 myoC-6312 + UCUUCUGCACGUCUUCCAU 19 6058 myoC-2136 + UUCU UCUGCACGUCUUCCAU 20 2254 myoC-6313 + UUUCUUCUGCACGUCU UCCAU 21 6059 myoC-6314 + U UUUCUUCUGCACGUCU UCCAU 22 6060 myoC-6315 + AUUU UCUUCUGCACG UCUUCCAU 23 6061 myoC-6316 + AAUUUUCUUCUGCACGUCUUCCAU 24 6062 myoC-3417 + CUGGGCAGCUGGAUUCAU 18 3163 myoC-3418 + UCUGGGCAGCUGGAU UCAU 19 3164 myoC-231 + CUCUGGGCAGCUGGAUUCAU 20 617 myoC-3419 + GCUCUGGGCAGCUGGAUUCAU 21 3165 myoC-3420 + UGCUCUGGGCAGCUGGAUUCAU 22 3166 myoC-3421 + CUGCUCUGGGCAGCUGGAUUCAU 23 3167 myoC-3422 + UCUGCUCUGGGCAGCUGGAUUCAU 24 3168 myoC-6317 + GGGGAGCCAGCCCUUCAU 18 6063 myoC-6318 + UGGGGAGCCAGCCCUUCAU 19 6064 myoC-869 + CUGGGGAGCCAGCCCUUCAU 20 1204 myoC-6319 + ACUGGGG AGCCAGCCCU UCAU 21 6065 myoC-6320 + UACUGGGGAGCCAGCCCUUCAU 22 6066 myoC-6321 + AUACUGGGGAGCCAGCCCUUCAU 23 6067 myoC-6322 + UAU ACUGGGG AGCCAGCCCU UCAU 24 6068 myoC-6323 + GAGAGGUU UAUAUAUACU 18 6069 myoC-6324 + AGAGAGGUUUAUAUAUACU 19 6070 myoC-866 + CAGAGAGGU UUAUAUAUACU 20 1191 myoC-6325 + CCAGAGAGGUU UAUAUAUACU 21 6071 myoC-6326 + UCCAGAGAGGUUUAUAUAUACU 22 6072 myoC-6327 + CUCCAGAGAGGUUUAUAUAUACU 23 6073 myoC-6328 + GCUCCAGAGAGGU UUAUAUAUACU 24 6074 myoC-6329 + GUGGAGGCCCCU UUCCCU 18 6075 myoC-6330 + CGUGGAGGCCCCUU UCCCU 19 6076 myoC-2175 + ACGUGGAGGCCCCUU UCCCU 20 2277 myoC-6331 + G ACG UGG AGGCCCCU U UCCCU 21 6077 myoC-6332 + GG ACG UGG AGGCCCCU U UCCCU 22 6078 myoC-6333 + UGGACGUGGAGGCCCCUUUCCCU 23 6079 myoC-6334 + CUGGACGUGGAGGCCCCUU UCCCU 24 6080 myoC-6335 + UCCGUGAAUUAACGGCCU 18 6081 myoC-6336 + U UCCGUGAAUUAACGGCCU 19 6082 myoC-1099 + CU UCCGUGAAUUAACGGCCU 20 1399 myoC-6337 + UCUUCCGUGAAU UAACGGCCU 21 6083 myoC-6338 + U UCUUCCGUGAAU UAACGGCCU 22 6084 myoC-6339 + CUUCU UCCGUGAAUUAACGGCCU 23 6085 myoC-6340 + ACU UCUUCCGUGAAUUAACGGCCU 24 6086 myoC-6341 + ACUCGGGCU UGGGGGCCU 18 6087 myoC-6342 + GACUCGGGCUUGGGGGCCU 19 6088 myoC-2149 + AG ACUCGGGCUUGGGGGCCU 20 2261 myoC-6343 + AAG ACUCGGGCUUGGGGGCCU 21 6089 myoC-6344 + GAAG ACUCGGGCU UGGGGGCCU 22 6090 myoC-6345 + GG AAG ACUCGGGCU UGGGGGCCU 23 6091 myoC-6346 + UGGAAGACUCGGGCUUGGGGGCCU 24 6092 myoC-3423 + GGCUUGGUGAGGCUUCCU 18 3169 myoC-3424 + AGGCUUGGUGAGGCUUCCU 19 3170 myoC-2357 + GAGGCUUGGUGAGGCU UCCU 20 2411 myoC-3425 + AGAGGCUUGGUGAGGCU UCCU 21 3171 myoC-3426 + CAGAGGCUUGGUGAGGCUUCCU 22 3172 myoC-3427 + GCAGAGGCUUGGUGAGGCUUCCU 23 3173 myoC-3428 + UGCAGAGGCUUGGUGAGGCUUCCU 24 3174 myoC-6347 + GAGGCAGCAGGGGGCGCU 18 6093 myoC-6348 + GGAGGCAGCAGGGGGCGCU 19 6094 myoC-717 + UGGAGGCAGCAGGGGGCGCU 20 1120 myoC-6349 + AUGGAGGCAGCAGGGGGCGCU 21 6095 myoC-6350 + GAUGGAGGCAGCAGGGGGCGCU 22 6096 myoC-6351 + CG AUGGAGGCAGCAGGGGGCGCU 23 6097 myoC-6352 + ACG AUGGAGGCAGCAGGGGGCGCU 24 6098 myoC-6353 + CUGAUGGAGGAGGAGGCU 18 6099 myoC-6354 + ACUGAUGGAGGAGGAGGCU 19 6100 myoC-702 + GACUGAUGGAGGAGGAGGCU 20 1004 myoC-6355 + UGACUGAUGGAGGAGGAGGCU 21 6101 myoC-6356 + GUG ACUGAUGGAGGAGGAGGCU 22 6102 myoC-6357 + UGUG ACUGAUGGAGGAGGAGGCU 23 6103 myoC-6358 + CUGUGACUGAUGGAGGAGGAGGCU 24 6104 myoC-6359 + GCU UGGAAGACUCGGGCU 18 6105 myoC-6360 + GGCUUGGAAGACUCGGGCU 19 6106 myoC-705 + AGGCU UGGAAGACUCGGGCU 20 1091 myoC-6361 + GAGGCUUGGAAGACUCGGGCU 21 6107 myoC-6362 + GG AGGCUUGGAAGACUCGGGCU 22 6108 myoC-6363 + AGG AGGCUUGGAAGACUCGGGCU 23 6109 myoC-6364 + GAGGAGGCU UGGAAGACUCGGGCU 24 6110 myoC-6365 + UGUGCCAGGCACUAUGCU 18 6111 myoC-6366 + CUGUGCCAGGCACUAUGCU 19 6112 myoC-891 + ACUGUGCCAGGCACUAUGCU 20 1178 myoC-6367 + CACUGUGCCAGGCACUAUGCU 21 6113 myoC-6368 + GCACUGUGCCAGGCACUAUGCU 22 6114 myoC-6369 + UGCACUGUGCCAGGCACUAUGCU 23 6115 myoC-6370 + CUGCACUGUGCCAGGCACUAUGCU 24 6116 myoC-3429 + ACAUGGCCUGGCUCUGCU 18 3175 myoC-3430 + GACAUGGCCUGGCUCUGCU 19 3176 myoC-1675 + UGACAUGGCCUGGCUCUGCU 20 1936 myoC-3431 + CUGACAUGGCCUGGCUCUGCU 21 3177 myoC-3432 + ACUGACAUGGCCUGGCUCUGCU 22 3178 myoC-3433 + GACUGACAUGGCCUGGCUCUGCU 23 3179 myoC-3434 + UGACUGACAUGGCCUGGCUCUGCU 24 3180 myoC-6371 + GGAAAGCUCUGCUGUGCU 18 6117 myoC-6372 + UGGAAAGCUCUGCUGUGCU 19 6118 myoC-2354 + CUGGAAAGCUCUGCUGUGCU 20 2408 myoC-6373 + UCUGGAAAGCUCUGCUGUGCU 21 6119 myoC-6374 + CUCUGGAAAGCUCUGCUGUGCU 22 6120 myoC-6375 + CCUCUGGAAAGCUCUGCUGUGCU 23 6121 myoC-6376 + UCCUCUGGAAAGCUCUGCUGUGCU 24 6122 myoC-6377 + ACGGGCUGGCAGGUUGCU 18 6123 myoC-6378 + CACGGGCUGGCAGGUUGCU 19 6124 myoC-2123 + GCACGGGCUGGCAGGUUGCU 20 2241 myoC-6379 + GGCACGGGCUGGCAGGUUGCU 21 6125 myoC-6380 + UGGCACGGGCUGGCAGGU UGCU 22 6126 myoC-6381 + GUGGCACGGGCUGGCAGGUUGCU 23 6127 myoC-6382 + AGUGGCACGGGCUGGCAGGUUGCU 24 6128 myoC-6383 + GGAGGCCCCU UUCCCUCU 18 6129 myoC-6384 + UGGAGGCCCCUUUCCCUCU 19 6130 myoC-2174 + GUGGAGGCCCCUUUCCCUCU 20 2276 myoC-6385 + CGUGGAGGCCCCUU UCCCUCU 21 6131 myoC-6386 + ACGUGGAGGCCCCUUUCCCUCU 22 6132 myoC-6387 + GACGUGGAGGCCCCUUUCCCUCU 23 6133 myoC-6388 + GGACGUGGAGGCCCCUUUCCCUCU 24 6134 myoC-3435 + UCCAGAACUGACU UGUCU 18 3181 myoC-3436 + CUCCAGAACUGACUUGUCU 19 3182 myoC-208 + CCUCCAGAACUGACUUGUCU 20 594 myoC-3437 + UCCUCCAGAACUGACUUGUCU 21 3183 myoC-3438 + UUCCUCCAGAACUGACU UGUCU 22 3184 myoC-3439 + CUUCCUCCAGAACUGACUUGUCU 23 3185 myoC-3440 + UCU UCCUCCAGAACUGACU UGUCU 24 3186 myoC-6389 + CGCUGCCAGCAAGAUUCU 18 6135 myoC-6390 + ACGCUGCCAGCAAGAUUCU 19 6136 myoC-2330 + CACGCUGCCAGCAAGAU UCU 20 2395 myoC-6391 + UCACGCUGCCAGCAAGAUUCU 21 6137 myoC-6392 + U UCACGCUGCCAGCAAGAUUCU 22 6138 myoC-6393 + CUUCACGCUGCCAGCAAGAUUCU 23 6139 myoC-6394 + CCUUCACGCUGCCAGCAAGAUUCU 24 6140 myoC-6395 + AACCU UCCAGAAGUCUGU 18 6141 myoC-6396 + UAACCU UCCAGAAGUCUGU 19 6142 myoC-2328 + AUAACCUUCCAGAAGUCUGU 20 2393 myoC-6397 + AAUAACCU UCCAGAAGUCUGU 21 6143 myoC-6398 + AAAUAACCUUCCAGAAGUCUGU 22 6144 myoC-6399 + AAAAUAACCUUCCAGAAGUCUGU 23 6145 myoC-6400 + GAAAAUAACCUUCCAGAAGUCUGU 24 6146 myoC-6401 + UCACUCUGCAAACUCAUU 18 6147 myoC-6402 + U UCACUCUGCAAACUCAUU 19 6148 myoC-2322 + AUUCACUCUGCAAACUCAU U 20 2388 myoC-6403 + CAU UCACUCUGCAAACUCAUU 21 6149 myoC-6404 + CCAUUCACUCUGCAAACUCAUU 22 6150 myoC-6405 + UCCAUUCACUCUGCAAACUCAUU 23 6151 myoC-6406 + U UCCAU UCACUCUGCAAACUCAUU 24 6152 myoC-6407 + CUUGGAAGACUCGGGCUU 18 6153 myoC-6408 + GCU UGGAAGACUCGGGCUU 19 6154 myoC-706 + GGCUUGGAAGACUCGGGCU U 20 978 myoC-6409 + AGGCU UGGAAGACUCGGGCUU 21 6155 myoC-6410 + GAGGCUUGGAAGACUCGGGCUU 22 6156 myoC-6411 + GGAGGCUUGGAAGACUCGGGCUU 23 6157 myoC-6412 + AGGAGGCUUGGAAGACUCGGGCU U 24 6158 myoC-6413 + UAGGGAGGUGGCCUUGUU 18 6159 myoC-6414 + CUAGGGAGGUGGCCUUGUU 19 6160 myoC-2140 + GCUAGGGAGGUGGCCUUGUU 20 2257 myoC-6415 + CGCUAGGGAGGUGGCCUUGUU 21 6161 myoC-6416 + GCGCUAGGGAGGUGGCCUUGU U 22 6162 myoC-6417 + GGCGCUAGGGAGGUGGCCUUGUU 23 6163 myoC-6418 + GGGCGCUAGGGAGGUGGCCUUGUU 24 6164 myoC-6419 + AUUUUAACAGCUGACU UU 18 6165 myoC-6420 + AAUUU UAACAGCUGACUUU 19 6166 myoC-2191 + GAAUUUUAACAGCUGACUUU 20 2289 myoC-6421 + GGAAUU UUAACAGCUGACU UU 21 6167 myoC-6422 + UGGAAU UUUAACAGCUGACU UU 22 6168 myoC-6423 + CUGGAAUUUUAACAGCUGACUUU 23 6169 myoC-6424 + CCUGGAAUUUUAACAGCUGACUUU 24 6170 myoC-6425 + UCCCUCUCCAU UUCCUU U 18 6171 myoC-6426 + UUCCCUCUCCAUU UCCU UU 19 6172 myoC-2172 + UUUCCCUCUCCAUU UCCUUU 20 2275 myoC-6427 + GUU UCCCUCUCCAUUUCCUUU 21 6173 myoC-6428 + AGU UUCCCUCUCCAUUUCCUU U 22 6174 myoC-6429 + UAGUUUCCCUCUCCAUUUCCU UU 23 6175 myoC-6430 + CUAGUUUCCCUCUCCAU UUCCUUU 24 6176 myoC-3441 - AGCGACUAAGGCAAGAAA 18 3187 myoC-3442 - AAGCGACUAAGGCAAGAAA 19 3188 myoC-1647 - GAAGCGACUAAGGCAAGAAA 20 1913 myoC-3443 - AGAAGCGACUAAGGCAAGAAA 21 3189 myoC-3444 - AAGAAGCGACUAAGGCAAGAAA 22 3190 myoC-3445 - G A AG A AG CG AC U A AG G C A AG AAA 23 3191 myoC-3446 - AGAAGAAGCGACUAAGGCAAGAAA 24 3192 myoC-6431 - CAGGCUCCAGAAAGGAAA 18 6177 myoC-6432 - CC AG G C U CCAG A A AG G AAA 19 6178 myoC-964 - UCCAGGCUCCAGAAAGGAAA 20 1264 myoC-6433 - CUCCAGGCUCCAGAAAGGAAA 21 6179 myoC-6434 - GCUCCAGGCUCCAGAAAGGAAA 22 6180 myoC-6435 - GGCUCCAGGCUCCAGAAAGGAAA 23 6181 myoC-6436 - UGGCUCCAGGCUCCAGAAAGGAAA 24 6182 myoC-6437 - GGGGUAUGGGUGCAUAAA 18 6183 myoC-6438 - UGGGGUAUGGGUGCAUAAA 19 6184 myoC-2095 - UUGGGGUAUGGGUGCAUAAA 20 2220 myoC-6439 - AU UGGGGUAUGGGUGCAUAAA 21 6185 myoC-6440 - UAU UGGGGUAUGGGUGCAUAAA 22 6186 myoC-6441 - UUAU UGGGGUAUGGGUGCAUAAA 23 6187 myoC-6442 - AUUAUUGGGGUAUGGGUGCAUAAA 24 6188 myoC-6443 - UGGGAUGUUCUUUU UAAA 18 6189 myoC-6444 - UUGGGAUGU UCUUUU UAAA 19 6190 myoC-2097 - AUUGGGAUGUUCU UUU UAAA 20 2221 myoC-6445 - AAUUGGGAUGUUCUU UUUAAA 21 6191 myoC-6446 - AAAUUGGGAUGU UCUU UUUAAA 22 6192 myoC-6447 - UAAAUUGGGAUGUUCU UUUUAAA 23 6193 myoC-6448 - AUAAAUUGGGAUG UUCUUU UUAAA 24 6194 myoC-6449 - AACCCAGUGCUGAAAGAA 18 6195 myoC-6450 - A A ACCC AG U G C U G A A AG A A 19 6196 myoC-693 - UAAACCCAGUGCUGAAAGAA 20 1113 myoC-6451 - U UAAACCCAGUGCUGAAAGAA 21 6197 myoC-6452 - CU UAAACCCAGUGCUGAAAGAA 22 6198 myoC-6453 - ACU UAAACCCAGUGCUGAAAGAA 23 6199 myoC-6454 - AACU UAAACCCAGUGCUGAAAGAA 24 6200 myoC-6455 - UGGCUCCAGGCUCCAGAA 18 6201 myoC-6456 - UUGGCUCCAGGCUCCAGAA 19 6202 myoC-963 - CUUGGCUCCAGGCUCCAGAA 20 1263 myoC-6457 - CCUUGGCUCCAGGCUCCAGAA 21 6203 myoC-6458 - UCCUUGGCUCCAGGCUCCAGAA 22 6204 myoC-6459 - CUCCU UGGCUCCAGGCUCCAGAA 23 6205 myoC-6460 - ACUCCUUGGCUCCAGGCUCCAGAA 24 6206 myoC-6461 - CCAGGCUCCAGAAAGGAA 18 6207 myoC-6462 - UCCAGGCUCCAGAAAGGAA 19 6208 myoC-1848 - CUCCAGGCU CCAG A A AG G A A 20 2057 myoC-6463 - GCUCCAGGCUCCAGAAAGGAA 21 6209 myoC-6464 - GGCUCCAGGCUCCAGAAAGGAA 22 6210 myoC-6465 - UGGCUCCAGGCUCCAGAAAGGAA 23 6211 myoC-6466 - UUGGCUCCAGGCUCCAGAAAGGAA 24 6212 myoC-3447 - AAGUCAGU UCUGGAGGAA 18 3193 myoC-3448 - CAAGUCAGUUCUGGAGGAA 19 3194 myoC-1644 - ACAAGUCAGUUCUGGAGGAA 20 1910 myoC-3449 - GACAAGUCAGU UCUGGAGGAA 21 3195 myoC-3450 - AG AC A AG U C AG U U C U G G AG G A A 22 3196 myoC-3451 - GAGACAAGUCAGUUCUGGAGGAA 23 3197 myoC-3452 - CGAGACAAGUCAGU UCUGGAGGAA 24 3198 myoC-6467 - UUAAUGGGAAUAUAGGAA 18 6213 myoC-6468 - UUUAAUGGGAAUAUAGGAA 19 6214 myoC-1915 - AU UUAAUGGGAAUAUAGGAA 20 2095 myoC-6469 - UAU U UAAUGGGAAUAUAGGAA 21 6215 myoC-6470 - UUAU UUAAUGGGAAUAUAGGAA 22 6216 myoC-6471 - U UUAUUUAAUGGGAAUAUAGGAA 23 6217 myoC-6472 - CUUUAUUUAAUGGGAAUAUAGGAA 24 6218 myoC-6473 - GUGUUUCCUCAGAGGGAA 18 6219 myoC-6474 - AGUGU UUCCUCAGAGGGAA 19 6220 myoC-974 - CAGUGUUUCCUCAGAGGGAA 20 1274 myoC-6475 - ACAGUGUUUCCUCAGAGGGAA 21 6221 myoC-6476 - GACAGUGUUUCCUCAGAGGGAA 22 6222 myoC-6477 - GGACAGUGUUUCCUCAGAGGGAA 23 6223 myoC-6478 - GGGACAGUGU UUCCUCAGAGGGAA 24 6224 myoC-6479 - AUGAGU UUGCAGAGUGAA 18 6225 myoC-6480 - AAUGAGUUUGCAGAGUGAA 19 6226 myoC-833 - CAAUGAGU UUGCAGAGUGAA 20 1188 myoC-6481 - UCAAUGAGUUUGCAGAGUGAA 21 6227 myoC-6482 - CUCAAUGAGUUUGCAGAGUGAA 22 6228 myoC-6483 - UCUCAAUGAGUUUGCAGAGUGAA 23 6229 myoC-6484 - UUCUCAAUGAGUU UGCAGAGUGAA 24 6230 myoC-6485 - GAAAGGCAGGAAGGUGAA 18 6231 myoC-6486 - U G A A AG GCAGGAAGGUGAA 19 6232 myoC-1890 - CUGAAAGGCAGGAAGGUGAA 20 2079 myoC-6487 - GCUGAAAGGCAGGAAGGUGAA 21 6233 myoC-6488 - UGCUGAAAGGCAGGAAGGUGAA 22 6234 myoC-6489 - GUGCUGAAAGGCAGGAAGGUGAA 23 6235 myoC-6490 - GGUGCUGAAAGGCAGGAAGGUGAA 24 6236 myoC-6491 - AGAGGGAAACUAGUCUAA 18 6237 myoC-6492 - GAGAGGGAAACUAGUCUAA 19 6238 myoC-967 - GG AGAGGGAAACUAGUCUAA 20 1267 myoC-6493 - UGG AGAGGGAAACUAGUCUAA 21 6239 myoC-6494 - AUGG AGAGGGAAACUAGUCUAA 22 6240 myoC-6495 - AAUGG AGAGGGAAACUAGUCUAA 23 6241 myoC-6496 - AAAUGG AGAGGGAAACUAGUCUAA 24 6242 myoC-6497 - ACGAAGGCCUUUAUUUAA 18 6243 myoC-6498 - CACGAAGGCCU U U AU U U AA 19 6244 myoC-1013 - UCACGAAGGCCU UUAU UUAA 20 1313 myoC-6499 - UUCACGAAGGCCUUUAU UUAA 21 6245 myoC-6500 - CU UCACGAAGGCCU UUAUUUAA 22 6246 myoC-6501 - CCUUCACGAAGGCCUUUAUUUAA 23 6247 myoC-6502 - UCCUUCACGAAGGCCUU UAUU UAA 24 6248 myoC-3453 - AGUCAUCCAUAACUUACA 18 3199 myoC-3454 - CAGUCAUCCAUAACUUACA 19 3200 myoC-1608 - UCAGUCAUCCAUAACU UACA 20 1888 myoC-3455 - GUCAGUCAUCCAUAACU UACA 21 3201 myoC-3456 - UGUCAGUCAUCCAUAACUUACA 22 3202 myoC-3457 - AUGUCAGUCAUCCAUAACUUACA 23 3203 myoC-3458 - CAUGUCAGUCAUCCAUAACU UACA 24 3204 myoC-6503 - GCACAGCAGAGCU UUCCA 18 6249 myoC-6504 - AG CAC AG C AG AG C U U U CC A 19 6250 myoC-2110 - CAGCACAGCAGAGCU UUCCA 20 2232 myoC-6505 - UCAGCACAGCAGAGCUU UCCA 21 6251 myoC-6506 - CUCAGCACAGCAGAGCU UUCCA 22 6252 myoC-6507 - UCUCAGCACAGCAGAGCUUUCCA 23 6253 myoC-6508 - CUCUCAGCACAGCAGAGCUU UCCA 24 6254 myoC-3459 - GACCCAGGAGGGGCUGCA 18 3205 myoC-3460 - AGACCCAGGAGGGGCUGCA 19 3206 myoC-1622 - GAGACCCAGGAGGGGCUGCA 20 1897 myoC-3461 - GG AGACCCAGGAGGGGCUGCA 21 3207 myoC-3462 - AGG AGACCCAGGAGGGGCUGCA 22 3208 myoC-3463 - CAGG AGACCCAGGAGGGGCUGCA 23 3209 myoC-3464 - CCAGGAGACCCAGGAGGGGCUGCA 24 3210 myoC-3465 - CCUCACCAAGCCUCUGCA 18 3211 myoC-3466 - GCCUCACCAAGCCUCUGCA 19 3212 myoC-1592 - AGCCUCACCAAGCCUCUGCA 20 1876 myoC-3467 - AAGCCUCACCAAGCCUCUGCA 21 3213 myoC-3468 - GAAGCCUCACCAAGCCUCUGCA 22 3214 myoC-3469 - GGAAGCCUCACCAAGCCUCUGCA 23 3215 myoC-3470 - AGGAAGCCUCACCAAGCCUCUGCA 24 3216 myoC-6509 - GGGGACAGUGUUUCCUCA 18 6255 myoC-6510 - AGGGGACAGUGU UUCCUCA 19 6256 myoC-1863 - GAGGGGACAGUGUUUCCUCA 20 2065 myoC-6511 - GGAGGGGACAGUGUUUCCUCA 21 6257 myoC-6512 - UGGAGGGGACAGUGUU UCCUCA 22 6258 myoC-6513 - CUGGAGGGGACAGUGU UUCCUCA 23 6259 myoC-6514 - UCUGGAGGGGACAGUGUUUCCUCA 24 6260 myoC-6515 - GGAGGUGACAGUUUCUCA 18 6261 myoC-6516 - UGGAGGUGACAGUUUCUCA 19 6262 myoC-692 - GUGGAGGUGACAGUUUCUCA 20 1021 myoC-6517 - CGUGGAGGUGACAGU UUCUCA 21 6263 myoC-6518 - UCGUGGAGGUGACAGUUUCUCA 22 6264 myoC-6519 - UUCGUGGAGGUGACAGUUUCUCA 23 6265 myoC-6520 - CUUCGUGGAGGUGACAGU UUCUCA 24 6266 myoC-6521 - UCCUAGGCCGUUAAUUCA 18 6267 myoC-6522 - U UCCU AGGCCGU U AAU UCA 19 6268 myoC-1017 - UU UCCUAGGCCGUUAAUUCA 20 1317 myoC-6523 - AUUUCCUAGGCCGUUAAUUCA 21 6269 myoC-6524 - CAU UUCCUAGGCCGU UAAUUCA 22 6270 myoC-6525 - UCAUU UCCUAGGCCGUUAAUUCA 23 6271 myoC-6526 - CUCAUUUCCUAGGCCGU UAAUUCA 24 6272 myoC-6527 - GAUGUUCAGUGUUGUUCA 18 6273 myoC-6528 - AGAUGU UCAGUGUUGU UCA 19 6274 myoC-999 - CAGAUGUUCAGUGU UGUUCA 20 1299 myoC-6529 - CCAGAUGUUCAG UGUUGUUCA 21 6275 myoC-6530 - CCCAGAUGUUCAGUGUUGUUCA 22 6276 myoC-6531 - GCCCAGAUGUUCAGUGUUGUUCA 23 6277 myoC-6532 - UGCCCAGAUGU UCAGUGUUGUUCA 24 6278 myoC-6533 - A A ACCC AG U G C U G A A AG A 18 6279 myoC-6534 - UAAACCCAGUGCUGAAAGA 19 6280 myoC-1834 - U U A A ACCC AG U G C U G A A AG A 20 2046 myoC-6535 - CU UAAACCCAGUGCUGAAAGA 21 6281 myoC-6536 - ACU UAAACCCAGUGCUGAAAGA 22 6282 myoC-6537 - AACU UAAACCCAGUGCUGAAAGA 23 6283 myoC-6538 - C A AC U UAAACCCAGUGCUGAAAGA 24 6284 myoC-6539 - UUGGCUCCAGGCUCCAGA 18 6285 myoC-6540 - CUUGGCUCCAGGCUCCAGA 19 6286 myoC-1846 - CCUUGGCUCCAGGCUCCAGA 20 2056 myoC-6541 - UCCU UGGCUCCAGGCUCCAGA 21 6287 myoC-6542 - CUCCUUGGCUCCAGGCUCCAGA 22 6288 myoC-6543 - ACUCCU UGGCUCCAGGCUCCAGA 23 6289 myoC-6544 - GACUCCU UGGCUCCAGGCUCCAGA 24 6290 myoC-3471 - CCCAGGAGGGGCUGCAGA 18 3217 myoC-3472 - ACCCAGGAGGGGCUGCAGA 19 3218 myoC-99 - GACCCAGGAGGGGCUGCAGA 20 504 myoC-3473 - AGACCCAGGAGGGGCUGCAGA 21 3219 myoC-3474 - GAGACCCAGGAGGGGCUGCAGA 22 3220 myoC-3475 - GG AG ACCCAGGAGGGGCUGCAGA 23 3221 myoC-3476 - AGGAGACCCAGGAGGGGCUGCAGA 24 3222 myoC-6545 - GGACAGUGU UUCCUCAGA 18 6291 myoC-6546 - GGGACAGUGUUUCCUCAGA 19 6292 myoC-973 - GGGGACAGUGUUUCCUCAGA 20 1273 myoC-6547 - AGGGGACAGUGUUUCCUCAGA 21 6293 myoC-6548 - GAGGGG ACAG UGU U UCCUCAG A 22 6294 myoC-6549 - GG AGGGGACAGUGU UUCCUCAGA 23 6295 myoC-6550 - UGGAGGGGACAGUGU UUCCUCAGA 24 6296 myoC-6551 - CCAGAAAGGAAAUGGAGA 18 6297 myoC-6552 - UCCAGAAAGGAAAUGGAGA 19 6298 myoC-966 - CUCCAGAAAGGAAAUGGAGA 20 1266 myoC-6553 - GCUCCAGAAAGGAAAUGGAGA 21 6299 myoC-6554 - GGCUCCAGAAAGGAAAUGGAGA 22 6300 myoC-6555 - AGGCUCCAGAAAGGAAAUGGAGA 23 6301 myoC-6556 - CAGGCUCCAGAAAGGAAAUGGAGA 24 6302 myoC-6557 - AGGUGGGGACUGCAGGGA 18 6303 myoC-6558 - GAGGUGGGGACUGCAGGGA 19 6304 myoC-1879 - GG AGGUGGGGACUGCAGGGA 20 2072 myoC-6559 - AGG AGGUGGGGACUGCAGGGA 21 6305 myoC-6560 - CAGG AGGUGGGGACUGCAGGGA 22 6306 myoC-6561 - CCAGG AGGUGGGGACUGCAGGGA 23 6307 myoC-6562 - UCCAGGAGGUGGGGACUGCAGGGA 24 6308 myoC-6563 - AGUGU UUCCUCAGAGGGA 18 6309 myoC-6564 - CAGUGUUUCCUCAGAGGGA 19 6310 myoC-1866 - ACAGUGUUUCCUCAGAGGGA 20 2066 myoC-6565 - GACAGUGU UUCCUCAGAGGGA 21 6311 myoC-6566 - GGACAGUGUUUCCUCAGAGGGA 22 6312 myoC-6567 - GGG ACAGUGUUUCCUCAGAGGGA 23 6313 myoC-6568 - GGGGACAGUGUUUCCUCAGAGGGA 24 6314 myoC-3477 - GGGCACCCUGAGGCGGGA 18 3223 myoC-3478 - UGGGCACCCUGAGGCGGGA 19 3224 myoC-1630 - CUGGGCACCCUGAGGCGGGA 20 1901 myoC-3479 - GCUGGGCACCCUGAGGCGGGA 21 3225 myoC-3480 - AGCUGGGCACCCUGAGGCGGGA 22 3226 myoC-3481 - GAGCUGGGCACCCUGAGGCGGGA 23 3227 myoC-3482 - GGAGCUGGGCACCCUGAGGCGGGA 24 3228 myoC-6569 - CUCCAGAAAGGAAAUGGA 18 6315 myoC-6570 - GCUCCAGAAAGGAAAUGGA 19 6316 myoC-1851 - GGCUCCAGAAAGGAAAUGGA 20 2059 myoC-6571 - AGGCUCCAGAAAGGAAAUGGA 21 6317 myoC-6572 - CAGGCUCCAGAAAGGAAAUGGA 22 6318 myoC-6573 - CCAGGCUCCAGAAAGGAAAUGGA 23 6319 myoC-6574 - UCCAGGCUCCAGAAAGGAAAUGGA 24 6320 myoC-6575 - UCUAACGGAGAAUCUGGA 18 6321 myoC-6576 - GUCUAACGGAGAAUCUGGA 19 6322 myoC-970 - AG UCUAACGGAGAAUCUGGA 20 1270 myoC-6577 - U AG UCUAACGGAGAAUCUGGA 21 6323 myoC-6578 - CU AG UCUAACGGAGAAUCUGGA 22 6324 myoC-6579 - ACU AG UCUAACGGAGAAUCUGGA 23 6325 myoC-6580 - AACUAGUCUAACGGAGAAUCUGGA 24 6326 myoC-6581 - ACU UAAACCCAGUGCUGA 18 6327 myoC-6582 - AACUUAAACCCAGUGCUGA 19 6328 myoC-1833 - CAACU UAAACCCAGUGCUGA 20 2045 myoC-6583 - CCAACUUAAACCCAGUGCUGA 21 6329 myoC-6584 - GCCAACU UAAACCCAGUGCUGA 22 6330 myoC-6585 - AGCCAACU UAAACCCAGUGCUGA 23 6331 myoC-6586 - CAGCCAACUUAAACCCAGUGCUGA 24 6332 myoC-6587 - AAUUCACGGAAGAAGUGA 18 6333 myoC-6588 - UAAUUCACGGAAGAAGUGA 19 6334 myoC-1919 - U U AAU UCACGG AAG AAG UGA 20 2098 myoC-6589 - GU UAAUUCACGGAAGAAGUGA 21 6335 myoC-6590 - CGUUAAUUCACGGAAGAAGUGA 22 6336 myoC-6591 - CCG U U AAU UCACGG AAG AAGUG A 23 6337 myoC-6592 - GCCGUUAAU UCACGG AAG AAG UGA 24 6338 myoC-6593 - AAUGAGUUUGCAGAGUGA 18 6339 myoC-6594 - CAAUGAGU UUGCAGAGUGA 19 6340 myoC-2084 - UCAAUGAG UUUGCAGAGUGA 20 2213 myoC-6595 - CUCAAUGAGUU UGCAGAGUGA 21 6341 myoC-6596 - UCUCAAUGAGUUUGCAGAGUGA 22 6342 myoC-6597 - UUCUCAAUGAGUU UGCAGAGUGA 23 6343 myoC-6598 - GUUCUCAAUGAGU UUGCAGAGUGA 24 6344 myoC-6599 - CU UUAUUUAAUGGGAAUA 18 6345 myoC-6600 - CCUUUAUU UAAUGGGAAUA 19 6346 myoC-1913 - GCCUUUAUU UAAUGGGAAUA 20 2094 myoC-6601 - GGCCU UUAU UUAAUGGGAAUA 21 6347 myoC-6602 - AGGCCU UUAUU UAAUGGGAAUA 22 6348 myoC-6603 - AAGGCCUUUAUU UAAUGGGAAUA 23 6349 myoC-6604 - GAAGGCCUUUAUU UAAUGGGAAUA 24 6350 myoC-6605 - UAAAACCAGGUGGAGAUA 18 6351 myoC-6606 - GUAAAACCAGG UGGAGAUA 19 6352 myoC-2090 - UG UAAAACCAGGUGGAGAUA 20 2217 myoC-6607 - GUG UAAAACCAGGUGGAGAUA 21 6353 myoC-6608 - UGUG UAAAACCAGGUGGAGAUA 22 6354 myoC-6609 - GUGUGUAAAACCAGGUGGAGAUA 23 6355 myoC-6610 - UGUGUGUAAAACCAGGUGGAGAUA 24 6356 myoC-6611 - GAGAGGGAAACUAGUCUA 18 6357 myoC-6612 - GGAGAGGGAAACUAGUCUA 19 6358 myoC-1854 - UGGAGAGGGAAACUAGUCUA 20 2060 myoC-6613 - AUGGAGAGGGAAACUAGUCUA 21 6359 myoC-6614 - AAUGGAGAGGGAAACUAGUCUA 22 6360 myoC-6615 - AAAUGGAGAGGGAAACUAGUCUA 23 6361 myoC-6616 - GAAAUGGAGAGGGAAACUAGUCUA 24 6362 myoC-6617 - GAGAUAUAGGAACUAUUA 18 6363 myoC-6618 - GGAGAUAUAGGAACUAU UA 19 6364 myoC-2092 - UGGAGAUAUAGGAACUAUUA 20 2218 myoC-6619 - GUGGAGAUAUAGGAACUAUUA 21 6365 myoC-6620 - GG UGGAGAUAUAGGAACUAUUA 22 6366 myoC-6621 - AGGUGGAGAUAUAGGAACUAU UA 23 6367 myoC-6622 - CAGG UGGAGAUAUAGGAACUAUUA 24 6368 myoC-3483 - UCAGUCAUCCAUAACUUA 18 3229 myoC-3484 - GUCAGUCAUCCAUAACU UA 19 3230 myoC-1607 - UGUCAGUCAUCCAUAACUUA 20 1887 myoC-3485 - AUGUCAGUCAUCCAUAACUUA 21 3231 myoC-3486 - CAUGUCAGUCAUCCAUAACUUA 22 3232 myoC-3487 - CCAUGUCAGUCAUCCAUAACUUA 23 3233 myoC-3488 - GCCAUGUCAGUCAUCCAUAACU UA 24 3234 myoC-6623 - UGUCCCUGCUACG UCUUA 18 6369 myoC-6624 - CUGUCCCUGCUACGUCUUA 19 6370 myoC-2079 - UCUGUCCCUGCUACGUCU UA 20 2208 myoC-6625 - CUCUGUCCCUGCUACGUCUUA 21 6371 myoC-6626 - UCUCUGUCCCUGCUACG UCUUA 22 6372 myoC-6627 - UUCUCUGUCCCUGCUACGUCUUA 23 6373 myoC-6628 - UU UCUCUGUCCCUGCUACGUCUUA 24 6374 myoC-6629 - CACGAAGGCCUU UAUUUA 18 6375 myoC-6630 - UCACGAAGGCCUU UAUU UA 19 6376 myoC-1910 - UUCACGAAGGCCUU UAU UUA 20 2093 myoC-6631 - CUUCACGAAGGCCUUUAUU UA 21 6377 myoC-6632 - CCUUCACGAAGGCCUU UAUUUA 22 6378 myoC-6633 - UCCU UCACG AAGGCCU U U AU U U A 23 6379 myoC-6634 - UUCCU UCACGAAGGCCU UUAU UUA 24 6380 myoC-3489 - CC AG CU GG AAACCC AAAC 18 3235 myoC-3490 - ACCAGCUGGAAACCCAAAC 19 3236 myoC-1634 - GACCAGCUGGAAACCCAAAC 20 1903 myoC-3491 - GG ACCAGCUGGAAACCCAAAC 21 3237 myoC-3492 - GGG ACCAGCUGGAAACCCAAAC 22 3238 myoC-3493 - CG G G ACC AGC U G G AAACCC AAAC 23 3239 myoC-3494 - GCGGG ACCAGCUGGAAACCCAAAC 24 3240 myoC-6635 - GUGAAUGGAAAUAUAAAC 18 6381 myoC-6636 - AGUGAAUGGAAAUAUAAAC 19 6382 myoC-2086 - GAGUGAAUGGAAAUAUAAAC 20 2214 myoC-6637 - AGAGUGAAUGGAAAUAUAAAC 21 6383 myoC-6638 - CAGAGUGAAUGGAAAUAUAAAC 22 6384 myoC-6639 - GCAG AGUGAAUGGAAAUAUAAAC 23 6385 myoC-6640 - UGCAGAG UGAAUGGAAAUAUAAAC 24 6386 myoC-6641 - CUUAUAUCUGCCAGACAC 18 6387 myoC-6642 - ACU U AU AUCUGCCAG ACAC 19 6388 myoC-1824 - UACU UAUAUCUGCCAGACAC 20 2038 myoC-6643 - GUACU UAUAUCUGCCAGACAC 21 6389 myoC-6644 - AGUACUUAUAUCUGCCAGACAC 22 6390 myoC-6645 - GAGUACUUAUAUCUGCCAGACAC 23 6391 myoC-6646 - UGAGUACUUAUAUCUGCCAGACAC 24 6392 myoC-6647 - GGGGAGCCCUGCAAGCAC 18 6393 myoC-6648 - GGGGGAGCCCUGCAAGCAC 19 6394 myoC-1817 - UGGGGGAGCCCUGCAAGCAC 20 2033 myoC-6649 - CUGGGGGAGCCCUGCAAGCAC 21 6395 myoC-6650 - GCUGGGGGAGCCCUGCAAGCAC 22 6396 myoC-6651 - AGCUGGGGGAGCCCUGCAAGCAC 23 6397 myoC-6652 - CAGCUGGGGGAGCCCUGCAAGCAC 24 6398 myoC-3495 - AGCACCCAACGCUUAGAC 18 3241 myoC-3496 - CAGCACCCAACGCUUAGAC 19 3242 myoC-1609 - GCAGCACCCAACGCU UAGAC 20 1889 myoC-3497 - AGCAGCACCCAACGCUUAGAC 21 3243 myoC-3498 - CAGCAGCACCCAACGCU UAGAC 22 3244 myoC-3499 - ACAGCAGCACCCAACGCUUAGAC 23 3245 myoC-3500 - GACAGCAGCACCCAACGCUUAGAC 24 3246 myoC-3501 - CAGAGGGAGCUGGGCACC 18 3247 myoC-3502 - GCAGAGGGAGCUGGGCACC 19 3248 myoC-1626 - UGCAGAGGGAGCUGGGCACC 20 1899 myoC-3503 - CUGCAGAGGGAGCUGGGCACC 21 3249 myoC-3504 - GCUGCAGAGGGAGCUGGGCACC 22 3250 myoC-3505 - GGCUGCAGAGGGAGCUGGGCACC 23 3251 myoC-3506 - GGGCUGCAGAGGGAGCUGGGCACC 24 3252 myoC-3507 - GCCAGGCCCCAGGAGACC 18 3253 myoC-3508 - UGCCAGGCCCCAGGAGACC 19 3254 myoC-1617 - CUGCCAGGCCCCAGGAGACC 20 1894 myoC-3509 - GCUGCCAGGCCCCAGGAGACC 21 3255 myoC-3510 - GGCUGCCAGGCCCCAGGAGACC 22 3256 myoC-3511 - AGGCUGCCAGGCCCCAGGAGACC 23 3257 myoC-3512 - CAGGCUGCCAGGCCCCAGGAGACC 24 3258 myoC-3513 - G CACCCAACG CU U AG ACC 18 3259 myoC-3514 - AGCACCCAACGCU U AG ACC 19 3260 myoC-179 - CAGCACCCAACGCUUAGACC 20 565 myoC-3515 - GCAGCACCCAACGCUUAGACC 21 3261 myoC-3516 - AGCAGCACCCAACGCU U AG ACC 22 3262 myoC-3517 - CAGCAGCACCCAACGCU UAGACC 23 3263 myoC-3518 - ACAGCAGCACCCAACGCUUAGACC 24 3264 myoC-3519 - CUCCUCCACCAAU UGACC 18 3265 myoC-3520 - CCUCCUCCACCAAUUGACC 19 3266 myoC-1614 - GCCUCCUCCACCAAUUGACC 20 1892 myoC-3521 - AGCCUCCUCCACCAAUUGACC 21 3267 myoC-3522 - GAGCCUCCUCCACCAAU UGACC 22 3268 myoC-3523 - AG AG CCU CCU CC ACCAAU U G ACC 23 3269 myoC-3524 - GAGAGCCUCCUCCACCAAUUGACC 24 3270 myoC-3525 - CCAGGCCCCAGGAGACCC 18 3271 myoC-3526 - GCCAGGCCCCAGGAGACCC 19 3272 myoC-185 - UGCCAGGCCCCAGGAGACCC 20 571 myoC-3527 - CUGCCAGGCCCCAGGAGACCC 21 3273 myoC-3528 - GCUGCCAGGCCCCAGGAGACCC 22 3274 myoC-3529 - GGCUGCCAGGCCCCAGGAGACCC 23 3275 myoC-3530 - AGGCUGCCAGGCCCCAGGAGACCC 24 3276 myoC-6653 - CCACCUCUGUCU UCCCCC 18 6399 myoC-6654 - GCCACCUCUGUCU UCCCCC 19 6400 myoC-2102 - GGCCACCUCUGUCUUCCCCC 20 2225 myoC-6655 - UGGCCACCUCUGUCUUCCCCC 21 6401 myoC-6656 - GUGGCCACCUCUGUCUUCCCCC 22 6402 myoC-6657 - CGUGGCCACCUCUGUCU UCCCCC 23 6403 myoC-6658 - ACGUGGCCACCUCUGUCUUCCCCC 24 6404 myoC-3531 - ACCAGGCUGCCAGGCCCC 18 3277 myoC-3532 - GACCAGGCUGCCAGGCCCC 19 3278 myoC-97 - GGACCAG G CU G CCAG G CCCC 20 502 myoC-3533 - UGGACCAGGCUGCCAGGCCCC 21 3279 myoC-3534 - UUGGACCAGGCUGCCAGGCCCC 22 3280 myoC-3535 - CUUGGACCAGGCUGCCAGGCCCC 23 3281 myoC-3536 - CCUUGGACCAGGCUGCCAGGCCCC 24 3282 myoC-3537 - GACCAGGCUGCCAGGCCC 18 3283 myoC-3538 - GGACCAGGCUGCCAGGCCC 19 3284 myoC-1615 - UGGACCAGGCUGCCAGGCCC 20 1893 myoC-3539 - UUGGACCAGGCUGCCAGGCCC 21 3285 myoC-3540 - CUUGGACCAGGCUGCCAGGCCC 22 3286 myoC-3541 - CCUUGGACCAGGCUGCCAGGCCC 23 3287 myoC-3542 - ACCU UGGACCAGGCUGCCAGGCCC 24 3288 myoC-3543 - AAGCUCGACUCAGCUCCC 18 3289 myoC-3544 - AAAGCUCGACUCAGCUCCC 19 3290 myoC-181 - CAAAGCUCGACUCAGCUCCC 20 567 myoC-3545 - CCAAAGCUCGACUCAGCUCCC 21 3291 myoC-3546 - ACCAAAG CU CG ACUCAG CU CCC 22 3292 myoC-3547 - CACCAAAGCUCGACUCAGCUCCC 23 3293 myoC-3548 - CCACCAAAGCUCGACUCAGCUCCC 24 3294 myoC-3555 - GAAAAUGAGAAUCUGGCC 18 3301 myoC-3556 - AGAAAAUGAGAAUCUGGCC 19 3302 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 581 myoC-3557 - CAAGAAAAUGAGAAUCUGGCC 21 3303 myoC-3558 - GCAAGAAAAUGAGAAUCUGGCC 22 3304 myoC-3559 - GGCAAGAAAAUGAGAAUCUGGCC 23 3305 myoC-3560 - AGGCAAGAAAAUGAGAAUCUGGCC 24 3306 myoC-3561 - CCAAUGAAUCCAGCUGCC 18 3307 myoC-3562 - CCCAAUGAAUCCAGCUGCC 19 3308 myoC-1605 - UCCCAAUGAAUCCAGCUGCC 20 1885 myoC-3563 - GUCCCAAUGAAUCCAGCUGCC 21 3309 myoC-3564 - AGUCCCAAUGAAUCCAGCUGCC 22 3310 myoC-3565 - CAGUCCCAAUGAAUCCAGCUGCC 23 3311 myoC-3566 - CCAGUCCCAAUGAAUCCAGCUGCC 24 3312 myoC-6659 - UGCUGCCUCCAUCGUGCC 18 6405 myoC-6660 - CUGCUGCCUCCAUCGUGCC 19 6406 myoC-695 - CCUGCUGCCUCCAUCGUGCC 20 1104 myoC-6661 - CCCUGCUGCCUCCAUCGUGCC 21 6407 myoC-6662 - CCCCUGCUGCCUCCAUCGUGCC 22 6408 myoC-6663 - CCCCCUGCUGCCUCCAUCGUGCC 23 6409 myoC-6664 - GCCCCCUGCUGCCUCCAUCGUGCC 24 6410 myoC-3567 - AAAGCUCGACUCAGCUCC 18 3313 myoC-3568 - CAAAGCUCGACUCAGCUCC 19 3314 myoC-1611 - CCAAAGCUCGACUCAGCUCC 20 1890 myoC-3569 - ACCAAAGCUCGACUCAGCUCC 21 3315 myoC-3570 - CACCAAAGCUCGACUCAGCUCC 22 3316 myoC-3571 - CCACCAAAGCUCGACUCAGCUCC 23 3317 myoC-3572 - GCCACCAAAGCUCGACUCAGCUCC 24 3318 myoC-6665 - AAAGGGGCCUCCACGUCC 18 6411 myoC-6666 - GAAAGGGGCCUCCACGUCC 19 6412 myoC-977 - GGAAAGGGGCCUCCACGUCC 20 1277 myoC-6667 - GGG AAAGGGGCCUCCACGUCC 21 6413 myoC-6668 - AGGG AAAGGGGCCUCCACGUCC 22 6414 myoC-6669 - GAGGG AAAGGGGCCUCCACGUCC 23 6415 myoC-6670 - AGAGGGAAAGGGGCCUCCACGUCC 24 6416 myoC-6671 - CACG UCCAGGAGAAUUCC 18 6417 myoC-6672 - CCACGUCCAGGAGAAUUCC 19 6418 myoC-978 - UCCACGUCCAGGAGAAUUCC 20 1278 myoC-6673 - CUCCACGUCCAGGAGAAUUCC 21 6419 myoC-6674 - CCUCCACGUCCAGGAGAAUUCC 22 6420 myoC-6675 - GCCUCCACGUCCAGGAGAAUUCC 23 6421 myoC-6676 - GGCCUCCACGUCCAGGAGAAUUCC 24 6422 myoC-3573 - GGCGGGAGCGGGACCAGC 18 3319 myoC-3574 - AGGCGGGAGCGGGACCAGC 19 3320 myoC-105 - GAGGCGGGAGCGGGACCAGC 20 510 myoC-3575 - UG AGGCGGGAGCGGGACCAGC 21 3321 myoC-3576 - CUGAGGCGGGAGCGGGACCAGC 22 3322 myoC-3577 - CCUG AGGCGGGAGCGGGACCAGC 23 3323 myoC-3578 - CCCUGAGGCGGGAGCGGGACCAGC 24 3324 myoC-6677 - AGAGGUUUCCUCUCCAGC 18 6423 myoC-6678 - CAGAGGU UUCCUCUCCAGC 19 6424 myoC-676 - GCAGAGGUU UCCUCUCCAGC 20 1006 myoC-6679 - GGCAGAGGUUUCCUCUCCAGC 21 6425 myoC-6680 - CGGCAGAGGUUUCCUCUCCAGC 22 6426 myoC-6681 - CCGGCAGAGGUU UCCUCUCCAGC 23 6427 myoC-6682 - CCCGGCAGAGGUUUCCUCUCCAGC 24 6428 myoC-6683 - AAGAAUCU UGCUGGCAGC 18 6429 myoC-6684 - UAAGAAUCUUGCUGGCAGC 19 6430 myoC-2101 - CUAAGAAUCUUGCUGGCAGC 20 2224 myoC-6685 - UCUAAGAAUCUUGCUGGCAGC 21 6431 myoC-6686 - UUCUAAGAAUCUUGCUGGCAGC 22 6432 myoC-6687 - UU UCUAAGAAUCUUGCUGGCAGC 23 6433 myoC-6688 - U UUUCUAAGAAUCU UGCUGGCAGC 24 6434 myoC-6689 - UAUAAACCUCUCUGGAGC 18 6435 myoC-6690 - AUAUAAACCUCUCUGGAGC 19 6436 myoC-2106 - UAUAUAAACCUCUCUGGAGC 20 2228 myoC-6691 - AUAUAUAAACCUCUCUGGAGC 21 6437 myoC-6692 - UAUAUAUAAACCUCUCUGGAGC 22 6438 myoC-6693 - GUAUAUAUAAACCUCUCUGGAGC 23 6439 myoC-6694 - AGUAUAUAUAAACCUCUCUGGAGC 24 6440 myoC-6695 - GUCCUGGUGCAUCUGAGC 18 6441 myoC-6696 - CGUCCUGGUGCAUCUGAGC 19 6442 myoC-1844 - UCGUCCUGGUGCAUCUGAGC 20 2054 myoC-6697 - AUCGUCCUGGUGCAUCUGAGC 21 6443 myoC-6698 - AAUCGUCCUGGUGCAUCUGAGC 22 6444 myoC-6699 - GAAUCGUCCUGGUGCAUCUGAGC 23 6445 myoC-6700 - UGAAUCGUCCUGGUGCAUCUGAGC 24 6446 myoC-6701 - UGCAGGGAGUGGGGACGC 18 6447 myoC-6702 - CUGCAGGGAGUGGGGACGC 19 6448 myoC-988 - ACUGCAGGGAGUGGGGACGC 20 1288 myoC-6703 - GACUGCAGGGAGUGGGGACGC 21 6449 myoC-6704 - GG ACUGCAGGGAGUGGGGACGC 22 6450 myoC-6705 - GGG ACUGCAGGGAGUGGGGACGC 23 6451 myoC-6706 - GGGGACUGCAGGGAGUGGGGACGC 24 6452 myoC-6707 - GAGCGGGUGCUGAAAGGC 18 6453 myoC-6708 - UGAGCGGGUGCUGAAAGGC 19 6454 myoC-994 - CUGAGCGGGUGCUGAAAGGC 20 1294 myoC-6709 - GCUGAGCGGGUGCUGAAAGGC 21 6455 myoC-6710 - GGCUGAGCGGGUGCUGAAAGGC 22 6456 myoC-6711 - GGGCUGAGCGGGUGCUGAAAGGC 23 6457 myoC-6712 - GGGGCUGAGCGGGUGCUGAAAGGC 24 6458 myoC-3585 - AGAAGAAGCGACUAAGGC 18 3331 myoC-3586 - GAGAAGAAGCGACUAAGGC 19 3332 myoC-1646 - AG AGAAGAAGCGACUAAGGC 20 1912 myoC-3587 - AAG AGAAGAAGCGACUAAGGC 21 3333 myoC-3588 - GAAG AGAAGAAGCGACUAAGGC 22 3334 myoC-3589 - GG AAG AGAAGAAGCGACUAAGGC 23 3335 myoC-3590 - AGG AAG AGAAGAAGCGACUAAGGC 24 3336 myoC-3591 - AGCUGGGCACCCUGAGGC 18 3337 myoC-3592 - GAGCUGGGCACCCUGAGGC 19 3338 myoC-103 - GG AGCUGGGCACCCUGAGGC 20 508 myoC-3593 - GGG AGCUGGGCACCCUGAGGC 21 3339 myoC-3594 - AGGG AGCUGGGCACCCUGAGGC 22 3340 myoC-3595 - GAGGG AGCUGGGCACCCUGAGGC 23 3341 myoC-3596 - AGAGGGAGCUGGGCACCCUGAGGC 24 3342 myoC-6713 - CCUCUCUGGAGCUCGGGC 18 6459 myoC-6714 - ACCUCUCUGGAGCUCGGGC 19 6460 myoC-2107 - AACCUCUCUGGAGCUCGGGC 20 2229 myoC-6715 - AAACCUCUCUGGAGCUCGGGC 21 6461 myoC-6716 - UAAACCUCUCUGGAGCUCGGGC 22 6462 myoC-6717 - AUAAACCUCUCUGGAGCUCGGGC 23 6463 myoC-6718 - UAUAAACCUCUCUGGAGCUCGGGC 24 6464 myoC-6719 - CAGUGU UGU UCACGGGGC 18 6465 myoC-6720 - UCAGUGUUGU UCACGGGGC 19 6466 myoC-1002 - UUCAGUGUUGUUCACGGGGC 20 1302 myoC-6721 - GUUCAGUGUUG UUCACGGGGC 21 6467 myoC-6722 - UGUUCAGUGUUGUUCACGGGGC 22 6468 myoC-6723 - AUGU UCAGUGUUGUUCACGGGGC 23 6469 myoC-6724 - GAUGUUCAGUGUUGU UCACGGGGC 24 6470 myoC-3597 - GGUGUGGGAUGUGGGGGC 18 3343 myoC-3598 - UGGUGUGGGAUGUGGGGGC 19 3344 myoC-1600 - CUGGUGUGGGAUGUGGGGGC 20 1881 myoC-3599 - CCUGGUGUGGGAUGUGGGGGC 21 3345 myoC-3600 - GCCUGGUGUGGGAUGUGGGGGC 22 3346 myoC-3601 - UGCCUGGUGUGGGAUGUGGGGGC 23 3347 myoC-3602 - CUGCCUGGUGUGGGAUGUGGGGGC 24 3348 myoC-3603 - GU UGCUGCAGCUUUGGGC 18 3349 myoC-3604 - CGUUGCUGCAGCUU UGGGC 19 3350 myoC-1594 - ACGU UGCUGCAGCUUUGGGC 20 1878 myoC-3605 - CACGUUGCUGCAGCU UUGGGC 21 3351 myoC-3606 - GCACGUUGCUGCAGCU UUGGGC 22 3352 myoC-3607 - UGCACGUUGCUGCAGCUUUGGGC 23 3353 myoC-3608 - GUGCACGUUGCUGCAGCUUUGGGC 24 3354 myoC-3609 - AGAAAAUGAGAAUCUGGC 18 3355 myoC-3610 - AAGAAAAUGAGAAUCUGGC 19 3356 myoC-1649 - CAAGAAAAUGAGAAUCUGGC 20 1915 myoC-3611 - GCAAGAAAAUGAGAAUCUGGC 21 3357 myoC-3612 - GGCAAGAAAAUGAGAAUCUGGC 22 3358 myoC-3613 - AGGCAAGAAAAUGAGAAUCUGGC 23 3359 myoC-3614 - AAGGCAAGAAAAUGAGAAUCUGGC 24 3360 myoC-6725 - CCAGGAGGUGGGGACUGC 18 6471 myoC-6726 - UCCAGGAGGUGGGGACUGC 19 6472 myoC-983 - UUCCAGGAGGUGGGGACUGC 20 1283 myoC-6727 - AU UCCAGGAGGUGGGGACUGC 21 6473 myoC-6728 - AAU UCCAGGAGGUGGGGACUGC 22 6474 myoC-6729 - GAAU UCCAGGAGGUGGGGACUGC 23 6475 myoC-6730 - AG AAU UCCAGGAGGUGGGGACUGC 24 6476 myoC-6731 - UUUUUAUCU UUUCUCUGC 18 6477 myoC-6732 - CUUU UUAUCUUUUCUCUGC 19 6478 myoC-1898 - CCUU UUUAUCUUUUCUCUGC 20 2084 myoC-6733 - GCCUU UUUAUCUUU UCUCUGC 21 6479 myoC-6734 - AGCCUUU UUAUCUUUUCUCUGC 22 6480 myoC-6735 - GAGCCUUUU UAUCUU UUCUCUGC 23 6481 myoC-6736 - UGAGCCUUU UUAUCUU UUCUCUGC 24 6482 myoC-6737 - CUGCUGCCUCCAUCGUGC 18 6483 myoC-6738 - CCUGCUGCCUCCAUCGUGC 19 6484 myoC-1838 - CCCUGCUGCCUCCAUCGUGC 20 2049 myoC-6739 - CCCCUGCUGCCUCCAUCGUGC 21 6485 myoC-6740 - CCCCCUGCUGCCUCCAUCGUGC 22 6486 myoC-6741 - GCCCCCUGCUGCCUCCAUCGUGC 23 6487 myoC-6742 - CGCCCCCUGCUGCCUCCAUCGUGC 24 6488 myoC-6743 - CUAGUCUAACGGAGAAUC 18 6489 myoC-6744 - ACUAGUCUAACGGAGAAUC 19 6490 myoC-968 - AACUAGUCUAACGGAGAAUC 20 1268 myoC-6745 - AAACUAGUCUAACGGAGAAUC 21 6491 myoC-6746 - GAAACUAGUCUAACGGAGAAUC 22 6492 myoC-6747 - GG AAACUAGUCUAACGGAGAAUC 23 6493 myoC-6748 - GGGAAACUAGUCUAACGGAGAAUC 24 6494 myoC-6749 - A AG G AAA UAAACACCAUC 18 6495 myoC-6750 - A A AG G AAA U A A AC ACC A U C 19 6496 myoC-1836 - G A A AG G AAA U A A AC ACC A U C 20 2047 myoC-6751 - AGAAAGGAAAUAAACACCAUC 21 6497 myoC-6752 - A AG A A AG G AAA U A A AC ACC A U C 22 6498 myoC-6753 - A A AG A A AG G AAA U A A AC ACC A U C 23 6499 myoC-6754 - GAAAGAAAGGAAAUAAACACCAUC 24 6500 myoC-3615 - GCCAGGACAGCUCAGCUC 18 3361 myoC-3616 - GGCCAGGACAGCUCAGCUC 19 3362 myoC-96 - GGGCCAGGACAGCUCAGCUC 20 501 myoC-3617 - GGGGCCAGGACAGCUCAGCUC 21 3363 myoC-3618 - GGGGGCCAGGACAGCUCAGCUC 22 3364 myoC-3619 - UGGGGGCCAGGACAGCUCAGCUC 23 3365 myoC-3620 - GUGGGGGCCAGGACAGCUCAGCUC 24 3366 myoC-6755 - CUCCUUGGCUCCAGGCUC 18 6501 myoC-6756 - ACUCCU UGGCUCCAGGCUC 19 6502 myoC-1845 - GACUCCUUGGCUCCAGGCUC 20 2055 myoC-6757 - AGACUCCUUGGCUCCAGGCUC 21 6503 myoC-6758 - GAGACUCCUUGGCUCCAGGCUC 22 6504 myoC-6759 - GGAGACUCCUUGGCUCCAGGCUC 23 6505 myoC-6760 - UGGAGACUCCU UGGCUCCAGGCUC 24 6506 myoC-6761 - UGUUUUGUUAUCACUCUC 18 6507 myoC-6762 - UUGUUU UGU UAUCACUCUC 19 6508 myoC-1821 - GUUGUU UUGU UAUCACUCUC 20 2036 myoC-6763 - GGUUGUUUUG UUAUCACUCUC 21 6509 myoC-6764 - UGGUUGUUUUGUUAUCACUCUC 22 6510 myoC-6765 - CUGGU UGUUU UGUUAUCACUCUC 23 6511 myoC-6766 - ACUGGUUGUUU UGU UAUCACUCUC 24 6512 myoC-6767 - AGUAUAUAUAAACCUCUC 18 6513 myoC-6768 - CAGUAUAUAUAAACCUCUC 19 6514 myoC-853 - CCAGUAUAUAUAAACCUCUC 20 1197 myoC-6769 - CCCAGUAUAUAUAAACCUCUC 21 6515 myoC-6770 - CCCCAGUAUAUAUAAACCUCUC 22 6516 myoC-6771 - UCCCCAGUAUAUAUAAACCUCUC 23 6517 myoC-6772 - CUCCCCAGUAUAUAUAAACCUCUC 24 6518 myoC-6773 - UGGAGGUGACAGU UUCUC 18 6519 myoC-6774 - GUGGAGGUGACAGUUUCUC 19 6520 myoC-1828 - CGUGGAGGUGACAGUU UCUC 20 2041 myoC-6775 - UCGUGGAGGUGACAGU UUCUC 21 6521 myoC-6776 - U UCGUGGAGGUGACAGUUUCUC 22 6522 myoC-6777 - CUUCGUGGAGG UGACAGUUUCUC 23 6523 myoC-6778 - CCUUCGUGGAGGUGACAGUUUCUC 24 6524 myoC-6779 - GAAAGGGGCCUCCACGUC 18 6525 myoC-6780 - GGAAAGGGGCCUCCACGUC 19 6526 myoC-1868 - GGGAAAGGGGCCUCCACGUC 20 2067 myoC-6781 - AGGGAAAGGGGCCUCCACGUC 21 6527 myoC-6782 - GAGGGAAAGGGGCCUCCACGUC 22 6528 myoC-6783 - AG AGGGAAAGGGGCCUCCACGUC 23 6529 myoC-6784 - CAGAGGGAAAGGGGCCUCCACGUC 24 6530 myoC-6785 - CCCGGGG UCCUGGGUGUC 18 6531 myoC-6786 - ACCCGGGGUCCUGGGUGUC 19 6532 myoC-1820 - CACCCGGGGUCCUGGGUGUC 20 2035 myoC-6787 - GCACCCGGGGUCCUGGGUGUC 21 6533 myoC-6788 - AGCACCCGGGGUCCUGGGUGUC 22 6534 myoC-6789 - AAGCACCCGGGGUCCUGGGUGUC 23 6535 myoC-6790 - CAAGCACCCGGGGUCCUGGGUGUC 24 6536 myoC-6791 - CCACGUCCAGGAGAAUUC 18 6537 myoC-6792 - UCCACGUCCAGGAGAAU UC 19 6538 myoC-1871 - CUCCACGUCCAGGAGAAUUC 20 2069 myoC-6793 - CCUCCACGUCCAGGAGAAUUC 21 6539 myoC-6794 - GCCUCCACGUCCAGGAGAAUUC 22 6540 myoC-6795 - GGCCUCCACGUCCAGGAGAAUUC 23 6541 myoC-6796 - GGGCCUCCACGUCCAGGAGAAUUC 24 6542 myoC-6797 - UUCCUAGGCCGUUAAU UC 18 6543 myoC-6798 - UU UCCUAGGCCGUUAAUUC 19 6544 myoC-1916 - AUUUCCUAGGCCGUUAAUUC 20 2096 myoC-6799 - CAU UUCCUAGGCCGU UAAUUC 21 6545 myoC-6800 - UCAUUUCCUAGGCCG UUAAU UC 22 6546 myoC-6801 - CUCAUUUCCUAGGCCGUUAAUUC 23 6547 myoC-6802 - GCUCAU UUCCUAGGCCGUUAAUUC 24 6548 myoC-6803 - AAACUCCAAACAGACU UC 18 6549 myoC-6804 - GAAACUCCAAACAGACU UC 19 6550 myoC-845 - AG AAACUCCAAACAGACU UC 20 1179 myoC-6805 - AAG AAACUCCAAACAG ACU UC 21 6551 myoC-6806 - AAAGAAACUCCAAACAGACUUC 22 6552 myoC-6807 - AAAAGAAACUCCAAACAGACU UC 23 6553 myoC-6808 - A A A A AG A A AC U CC A A AC AG AC U U C 24 6554 myoC-6809 - AG UCACUGCCCU ACCU UC 18 6555 myoC-6810 - CAGUCACUGCCCUACCU UC 19 6556 myoC-1826 - GCAGUCACUGCCCUACCUUC 20 2040 myoC-6811 - AGCAGUCACUGCCCUACCUUC 21 6557 myoC-6812 - AAGCAGUCACUGCCCUACCUUC 22 6558 myoC-6813 - AAAGCAGUCACUGCCCUACCUUC 23 6559 myoC-6814 - CAAAGCAGUCACUGCCCUACCUUC 24 6560 myoC-6815 - GUGCAUGGGUUU UCCUUC 18 6561 myoC-6816 - UG UGCAUGGGUU UUCCUUC 19 6562 myoC-1909 - GUGUGCAUGGGU UUUCCUUC 20 2092 myoC-6817 - GGUGUGCAUGGGU UUUCCUUC 21 6563 myoC-6818 - GGGUGUGCAUGGGU UUUCCU UC 22 6564 myoC-6819 - AGGGUG UGCAUGGGUU UUCCUUC 23 6565 myoC-6820 - CAGGG UGUGCAUGGGU UUUCCUUC 24 6566 myoC-3621 - U CCG AG AC A AG U C AG U U C 18 3367 myoC-3622 - CUCCGAGACAAGUCAGU UC 19 3368 myoC-191 - CCUCCGAGACAAGUCAGUUC 20 577 myoC-3623 - UCCUCCGAGACAAGUCAGUUC 21 3369 myoC-3624 - CUCCUCCGAGACAAGUCAGUUC 22 3370 myoC-3625 - CCUCCUCCGAGACAAG UCAGUUC 23 3371 myoC-3626 - ACCU CCU CCG AG ACAAG UCAG U UC 24 3372 myoC-6821 - AGAUGUUCAGUGUUGU UC 18 6567 myoC-6822 - CAGAUGUUCAGUGUUGUUC 19 6568 myoC-1892 - CCAGAUGUUCAGUGUUGU UC 20 2081 myoC-6823 - CCCAGAUGUUCAGUGU UGUUC 21 6569 myoC-6824 - GCCCAGAUGUUCAGUGU UGUUC 22 6570 myoC-6825 - UGCCCAGAUGU UCAGUGUUGUUC 23 6571 myoC-6826 - CUGCCCAGAUGUUCAGUGUUGUUC 24 6572 myoC-6827 - GGAGAAGAAGUCUAU UUC 18 6573 myoC-6828 - AGGAGAAGAAGUCUAUU UC 19 6574 myoC-1904 - GAGGAGAAGAAGUCUAUUUC 20 2088 myoC-6829 - GGAGGAGAAGAAGUCUAU UUC 21 6575 myoC-6830 - UGGAGGAGAAGAAGUCUAUUUC 22 6576 myoC-6831 - UUGGAGGAGAAGAAGUCUAUUUC 23 6577 myoC-6832 - CUUGGAGGAGAAGAAGUCUAUU UC 24 6578 myoC-6833 - CAGCACAGCAGAGCUUUC 18 6579 myoC-6834 - UCAGCACAGCAGAGCUU UC 19 6580 myoC-2109 - CUCAGCACAGCAGAGCU UUC 20 2231 myoC-6835 - UCUCAGCACAGCAGAGCUUUC 21 6581 myoC-6836 - CUCUCAGCACAGCAGAGCUUUC 22 6582 myoC-6837 - CCUCUCAGCACAGCAGAGCUUUC 23 6583 myoC-6838 - ACCUCUCAGCACAGCAGAGCU UUC 24 6584 myoC-6839 - GUGCUGAAAGGCAGGAAG 18 6585 myoC-6840 - GGUGCUGAAAGGCAGGAAG 19 6586 myoC-1889 - GGGUGCUGAAAGGCAGGAAG 20 2078 myoC-6841 - CGGGUGCUGAAAGGCAGGAAG 21 6587 myoC-6842 - GCGGGUGCUGAAAGGCAGGAAG 22 6588 myoC-6843 - AGCGGGUGCUGAAAGGCAGGAAG 23 6589 myoC-6844 - GAGCGGGUGCUGAAAGGCAGGAAG 24 6590 myoC-6845 - AGGCACCUCUCAGCACAG 18 6591 myoC-6846 - CAGGCACCUCUCAGCACAG 19 6592 myoC-2108 - CCAGGCACCUCUCAGCACAG 20 2230 myoC-6847 - U CC AG G C ACC U C U C AG C AC AG 21 6593 myoC-6848 - AUCCAGGCACCUCUCAGCACAG 22 6594 myoC-6849 - CAUCCAGGCACCUCUCAGCACAG 23 6595 myoC-6850 - CCAU CC AG G C ACCU CU CAG CACAG 24 6596 myoC-6851 - GUGUGUGUGUAAAACCAG 18 6597 myoC-6852 - UG UGUGUGUGUAAAACCAG 19 6598 myoC-2088 - GUGUGUGUGUGUAAAACCAG 20 2216 myoC-6853 - UG UGUGUGUGUGUAAAACCAG 21 6599 myoC-6854 - GUGUGUGUGUGUGUAAAACCAG 22 6600 myoC-6855 - UGUGUGUGUGUGUGUAAAACCAG 23 6601 myoC-6856 - GUGUGUGUGUGUGUGUAAAACCAG 24 6602 myoC-3627 - AGGCGGGAGCGGGACCAG 18 3373 myoC-3628 - GAGGCGGGAGCGGGACCAG 19 3374 myoC-1632 - UG AGGCGGGAGCGGGACCAG 20 1902 myoC-3629 - CUG AGGCGGGAGCGGGACCAG 21 3375 myoC-3630 - CCUG AGGCGGGAGCGGGACCAG 22 3376 myoC-3631 - CCCUG AGGCGGGAGCGGGACCAG 23 3377 myoC-3632 - ACCCUGAGGCGGGAGCGGGACCAG 24 3378 myoC-3633 - AGGCCCCAGGAGACCCAG 18 3379 myoC-3634 - CAGGCCCCAGGAGACCCAG 19 3380 myoC-1619 - CCAGGCCCCAGGAGACCCAG 20 1895 myoC-3635 - GCCAGGCCCCAGGAGACCCAG 21 3381 myoC-3636 - UGCCAGGCCCCAGGAGACCCAG 22 3382 myoC-3637 - CUGCCAGGCCCCAGGAGACCCAG 23 3383 myoC-3638 - GCUGCCAGGCCCCAGGAGACCCAG 24 3384 myoC-6857 - CAGAGGU UUCCUCUCCAG 18 6603 myoC-6858 - GCAGAGGUUUCCUCUCCAG 19 6604 myoC-1812 - GGCAGAGGUUUCCUCUCCAG 20 2032 myoC-6859 - CGGCAGAGGUUUCCUCUCCAG 21 6605 myoC-6860 - CCGGCAGAGG UUUCCUCUCCAG 22 6606 myoC-6861 - CCCGGCAGAGGUU UCCUCUCCAG 23 6607 myoC-6862 - CCCCGGCAGAGGUUUCCUCUCCAG 24 6608 myoC-6863 - CACAGCAGAGCUUUCCAG 18 6609 myoC-6864 - GCACAGCAGAGCUU UCCAG 19 6610 myoC-2111 - AGCACAGCAGAGCUUUCCAG 20 2233 myoC-6865 - CAGCACAGCAGAGCU UUCCAG 21 6611 myoC-6866 - UCAGCACAGCAGAGCUUUCCAG 22 6612 myoC-6867 - CU CAGCACAG CAG AG CU U UCCAG 23 6613 myoC-6868 - UCUCAGCACAGCAGAGCUUUCCAG 24 6614 myoC-3639 - ACCCAGGAGGGGCUGCAG 18 3385 myoC-3640 - GACCCAGGAGGGGCUGCAG 19 3386 myoC-188 - AG ACCCAGGAGGGGCUGCAG 20 574 myoC-3641 - GAG ACCCAGGAGGGGCUGCAG 21 3387 myoC-3642 - GG AG ACCCAGGAGGGGCUGCAG 22 3388 myoC-3643 - AGG AG ACCCAGGAGGGGCUGCAG 23 3389 myoC-3644 - CAGGAGACCCAGGAGGGGCUGCAG 24 3390 myoC-6869 - CUCAUGGAAGACGUGCAG 18 6615 myoC-6870 - UCUCAUGGAAGACGUGCAG 19 6616 myoC-1831 - UUCUCAUGGAAGACG UGCAG 20 2043 myoC-6871 - UU UCUCAUGGAAGACGUGCAG 21 6617 myoC-6872 - GUU UCUCAUGGAAGACGUGCAG 22 6618 myoC-6873 - AG UUUCUCAUGGAAGACGUGCAG 23 6619 myoC-6874 - CAGU UUCUCAUGGAAGACGUGCAG 24 6620 myoC-6875 - GGGACAGUGUUUCCUCAG 18 6621 myoC-6876 - GGGGACAGUGUUUCCUCAG 19 6622 myoC-972 - AGGGG ACAG UGU U UCCUCAG 20 1272 myoC-6877 - GAGGGGACAGUGUUUCCUCAG 21 6623 myoC-6878 - GGAGGGGACAGUGUU UCCUCAG 22 6624 myoC-6879 - UGGAGGGGACAGUGUU UCCUCAG 23 6625 myoC-6880 - CUGGAGGGGACAGUGUU UCCUCAG 24 6626 myoC-3645 - UCAGUUCUGGAGGAAGAG 18 3391 myoC-3646 - GUCAGUUCUGGAGGAAGAG 19 3392 myoC-1645 - AG UCAG UUCUGGAGGAAGAG 20 1911 myoC-3647 - AAG UCAGUUCUGGAGGAAGAG 21 3393 myoC-3648 - CAAG UCAGU UCUGGAGGAAGAG 22 3394 myoC-3649 - AC AAG U C AG UUCUGGAGGAAGAG 23 3395 myoC-3650 - GACAAGUCAGUUCUGGAGGAAGAG 24 3396 myoC-3651 - GAAUCCAGCUGCCCAGAG 18 3397 myoC-3652 - UGAAUCCAGCUGCCCAGAG 19 3398 myoC-1606 - AUGAAUCCAGCUGCCCAGAG 20 1886 myoC-3653 - AAUGAAUCCAGCUGCCCAGAG 21 3399 myoC-3654 - C A A UGAAUCCAGCUG CCC AG AG 22 3400 myoC-3655 - CCAAUGAAUCCAGCUGCCCAGAG 23 3401 myoC-3656 - CCCAAUGAAUCCAGCUGCCCAGAG 24 3402 myoC-3657 - GAAACCCAAACCAGAGAG 18 3403 myoC-3658 - GGAAACCCAAACCAGAGAG 19 3404 myoC-1636 - U G G A AACCC AAACCAG AG AG 20 1905 myoC-3659 - CU GGAAACCCAAACCAGAGAG 21 3405 myoC-3660 - G C U G G A AACCC AAACCAG AG AG 22 3406 myoC-3661 - AGCUGGAAACCCAAACCAGAGAG 23 3407 myoC-3662 - CAGCUGGAAACCCAAACCAGAGAG 24 3408 myoC-6881 - CCAGGAGAAUUCCAGGAG 18 6627 myoC-6882 - UCCAGGAGAAUUCCAGGAG 19 6628 myoC-1873 - GUCCAGGAGAAUUCCAGGAG 20 2070 myoC-6883 - CG U CC AG G AG A A U U CC AG G AG 21 6629 myoC-6884 - ACG UCCAGGAGAAUUCCAGGAG 22 6630 myoC-6885 - CACG UCCAGGAGAAUUCCAGGAG 23 6631 myoC-6886 - CCACGUCCAGGAGAAU UCCAGGAG 24 6632 myoC-6887 - UUUCUCUGCUUGGAGGAG 18 6633 myoC-6888 - UU UUCUCUGCUUGGAGGAG 19 6634 myoC-1903 - CUUUUCUCUGCUUGGAGGAG 20 2087 myoC-6889 - UCUUU UCUCUGCU UGGAGGAG 21 6635 myoC-6890 - AUCUUUUCUCUGCUUGGAGGAG 22 6636 myoC-6891 - UAUCUUUUCUCUGCUUGGAGGAG 23 6637 myoC-6892 - UUAUCUUUUCUCUGCU UGGAGGAG 24 6638 myoC-6893 - GGUGGGGACUGCAGGGAG 18 6639 myoC-6894 - AGGUGGGGACUGCAGGGAG 19 6640 myoC-985 - GAGGUGGGGACUGCAGGGAG 20 1285 myoC-6895 - GG AGGUGGGGACUGCAGGGAG 21 6641 myoC-6896 - AGGAGGUGGGGACUGCAGGGAG 22 6642 myoC-6897 - CAGGAGGUGGGGACUGCAGGGAG 23 6643 myoC-6898 - CCAGGAGGUGGGGACUGCAGGGAG 24 6644 myoC-3663 - GAGGGGCUGCAGAGGGAG 18 3409 myoC-3664 - GGAGGGGCUGCAGAGGGAG 19 3410 myoC-1625 - AGGAGGGGCUGCAGAGGGAG 20 1898 myoC-3665 - CAGGAGGGGCUGCAGAGGGAG 21 3411 myoC-3666 - CCAGGAGGGGCUGCAGAGGGAG 22 3412 myoC-3667 - CCCAGGAGGGGCUGCAGAGGGAG 23 3413 myoC-3668 - ACCCAGGAGGGGCUGCAGAGGGAG 24 3414 myoC-3669 - GGCACCCUGAGGCGGGAG 18 3415 myoC-3670 - GGGCACCCUGAGGCGGGAG 19 3416 myoC-190 - UGGGCACCCUGAGGCGGGAG 20 576 myoC-3671 - CUGGGCACCCUGAGGCGGGAG 21 3417 myoC-3672 - GCUGGGCACCCUGAGGCGGGAG 22 3418 myoC-3673 - AGCUGGGCACCCUGAGGCGGGAG 23 3419 myoC-3674 - GAGCUGGGCACCCUGAGGCGGGAG 24 3420 myoC-6899 - UCCAGAAAGGAAAUGGAG 18 6645 myoC-6900 - CUCCAGAAAGGAAAUGGAG 19 6646 myoC-965 - GCUCCAGAAAGGAAAUGGAG 20 1265 myoC-6901 - GGCUCCAGAAAGGAAAUGGAG 21 6647 myoC-6902 - AGGCUCCAG A A AG G AAA U G G AG 22 6648 myoC-6903 - CAGGCUCCAGAAAGGAAAUGGAG 23 6649 myoC-6904 - CC AG G C U CCAG A A AG G AAA U G G AG 24 6650 myoC-6905 - UCU UUUCUCUGCUUGGAG 18 6651 myoC-6906 - AUCUUU UCUCUGCU UGGAG 19 6652 myoC-1902 - UAUCUUU UCUCUGCU UGGAG 20 2086 myoC-6907 - UUAUCUU UUCUCUGCUUGGAG 21 6653 myoC-6908 - UU UAUCUU UUCUCUGCUUGGAG 22 6654 myoC-6909 - U UUUAUCU UUUCUCUGCUUGGAG 23 6655 myoC-6910 - UU UUUAUCU UUUCUCUGCUUGGAG 24 6656 myoC-3675 - GGAGCUGGGCACCCUGAG 18 3421 myoC-3676 - GGGAGCUGGGCACCCUGAG 19 3422 myoC-1627 - AGGGAGCUGGGCACCCUGAG 20 1900 myoC-3677 - GAGGGAGCUGGGCACCCUGAG 21 3423 myoC-3678 - AGAGGGAGCUGGGCACCCUGAG 22 3424 myoC-3679 - CAGAGGGAGCUGGGCACCCUGAG 23 3425 myoC-3680 - GCAG AGGGAGCUGGGCACCCUGAG 24 3426 myoC-6911 - CGUCCUGGUGCAUCUGAG 18 6657 myoC-6912 - UCGUCCUGGUGCAUCUGAG 19 6658 myoC-1843 - AUCGUCCUGGUGCAUCUGAG 20 2053 myoC-6913 - AAUCGUCCUGGUGCAUCUGAG 21 6659 myoC-6914 - GAAUCGUCCUGGUGCAUCUGAG 22 6660 myoC-6915 - UGAAUCGUCCUGGUGCAUCUGAG 23 6661 myoC-6916 - GUGAAUCGUCCUGGUGCAUCUGAG 24 6662 myoC-6917 - CUGCAGGGAGUGGGGACG 18 6663 myoC-6918 - ACUGCAGGGAGUGGGGACG 19 6664 myoC-1882 - GACUGCAGGGAGUGGGGACG 20 2073 myoC-6919 - GG ACUGCAGGGAGUGGGGACG 21 6665 myoC-6920 - GGG ACUGCAGGGAGUGGGGACG 22 6666 myoC-6921 - GGGG ACUGCAGGGAGUGGGGACG 23 6667 myoC-6922 - UGGGGACUGCAGGGAGUGGGGACG 24 6668 myoC-6923 - GUCACUGCCCUACCUUCG 18 6669 myoC-6924 - AGUCACUGCCCUACCUUCG 19 6670 myoC-690 - CAGUCACUGCCCUACCU UCG 20 1100 myoC-6925 - GCAGUCACUGCCCUACCUUCG 21 6671 myoC-6926 - AGCAGUCACUGCCCUACCUUCG 22 6672 myoC-6927 - AAGCAGUCACUGCCCUACCU UCG 23 6673 myoC-6928 - AAAGCAGUCACUGCCCUACCUUCG 24 6674 myoC-6929 - UGAGCGGGUGCUGAAAGG 18 6675 myoC-6930 - CUGAGCGGGUGCUGAAAGG 19 6676 myoC-1887 - GCUGAGCGGGUGCUGAAAGG 20 2077 myoC-6931 - GGCUGAGCGGGUGCUGAAAGG 21 6677 myoC-6932 - GGGCUGAGCGGGUGCUGAAAGG 22 6678 myoC-6933 - GGGGCUGAGCGGGUGCUGAAAGG 23 6679 myoC-6934 - UGGGGCUGAGCGGGUGCUGAAAGG 24 6680 myoC-6935 - A AG G U G A A A AG G G C A AG G 18 6681 myoC-6936 - GAAGGUGAAAAGGGCAAGG 19 6682 myoC-1891 - GGAAGGUG A A A AG G G C A AG G 20 2080 myoC-6937 - AGGAAGGUGAAAAGGGCAAGG 21 6683 myoC-6938 - CAGGAAGGUGAAAAGGGCAAGG 22 6684 myoC-6939 - G C AG G A AG G U G A A A AG G G C A AG G 23 6685 myoC-6940 - GGCAGGAAGGUGAAAAGGGCAAGG 24 6686 myoC-6941 - UGUGUGUGUAAAACCAGG 18 6687 myoC-6942 - GUGUGUGUGUAAAACCAGG 19 6688 myoC-836 - UG UGUGUGUGUAAAACCAGG 20 1218 myoC-6943 - GUGUGUGUGUGUAAAACCAGG 21 6689 myoC-6944 - UGUG UGUGUGUGUAAAACCAGG 22 6690 myoC-6945 - GUGUGUGUGUGUGUAAAACCAGG 23 6691 myoC-6946 - UG UGUGUGUGUGUGUAAAACCAGG 24 6692 myoC-3681 - GGCCCCAGGAGACCCAGG 18 3427 myoC-3682 - AGGCCCCAGGAGACCCAGG 19 3428 myoC-186 - CAGGCCCCAGGAGACCCAGG 20 572 myoC-3683 - CC AG G CCCC AG G AG ACCC AG G 21 3429 myoC-3684 - GCCAGGCCCCAGGAGACCCAGG 22 3430 myoC-3685 - UGCCAGGCCCCAGGAGACCCAGG 23 3431 myoC-3686 - CUGCCAGGCCCCAGGAGACCCAGG 24 3432 myoC-6947 - C AG GAGAAUUCCAGGAGG 18 6693 myoC-6948 - CCAGGAGAAUUCCAGGAGG 19 6694 myoC-980 - UCCAGGAGAAUUCCAGGAGG 20 1280 myoC-6949 - GUCCAGGAGAAUUCCAGGAGG 21 6695 myoC-6950 - CG UCCAGGAGAAUUCCAGGAGG 22 6696 myoC-6951 - ACGUCCAGGAGAAU UCCAGGAGG 23 6697 myoC-6952 - CACG UCCAGGAGAAUUCCAGGAGG 24 6698 myoC-3693 - ACAAGUCAGUUCUGGAGG 18 3439 myoC-3694 - GACAAGUCAGUUCUGGAGG 19 3440 myoC-1643 - AGACAAGUCAGU UCUGGAGG 20 1909 myoC-3695 - GAGACAAGUCAGUUCUGGAGG 21 3441 myoC-3696 - CGAGACAAGUCAGUUCUGGAGG 22 3442 myoC-3697 - CCG AG AC A AG UCAGUUCUGGAGG 23 3443 myoC-3698 - UCCGAGACAAGUCAGU UCUGGAGG 24 3444 myoC-3699 - GAGCUGGGCACCCUGAGG 18 3445 myoC-3700 - GGAGCUGGGCACCCUGAGG 19 3446 myoC-102 - GGGAGCUGGGCACCCUGAGG 20 507 myoC-3701 - AGGGAGCUGGGCACCCUGAGG 21 3447 myoC-3702 - GAGGGAGCUGGGCACCCUGAGG 22 3448 myoC-3703 - AGAGGGAGCUGGGCACCCUGAGG 23 3449 myoC-3704 - CAGAGGGAGCUGGGCACCCUGAGG 24 3450 myoC-6953 - UAGGCCGU UAAUUCACGG 18 6699 myoC-6954 - CUAGGCCGU UAAUUCACGG 19 6700 myoC-1918 - CCUAGGCCGUUAAUUCACGG 20 2097 myoC-6955 - UCCUAGGCCGUUAAUUCACGG 21 6701 myoC-6956 - UUCCUAGGCCGUUAAUUCACGG 22 6702 myoC-6957 - UUUCCUAGGCCGUUAAU UCACGG 23 6703 myoC-6958 - AUUUCCUAGGCCGUUAAUUCACGG 24 6704 myoC-6959 - UCAGUGUUGUUCACGGGG 18 6705 myoC-6960 - UUCAGUGUUGU UCACGGGG 19 6706 myoC-1894 - GU UCAGUGUUGUUCACGGGG 20 2082 myoC-6961 - UGUUCAGUGUUGUUCACGGGG 21 6707 myoC-6962 - AUGUUCAGUGUUGUUCACGGGG 22 6708 myoC-6963 - GAUG UUCAGUGUUGUUCACGGGG 23 6709 myoC-6964 - AGAUGU UCAGUGUUGU UCACGGGG 24 6710 myoC-6965 - GGAGUGGGGACGCUGGGG 18 6711 myoC-6966 - GGGAGUGGGGACGCUGGGG 19 6712 myoC-1884 - AGGGAGUGGGGACGCUGGGG 20 2074 myoC-6967 - CAGGGAGUGGGGACGCUGGGG 21 6713 myoC-6968 - GCAGGGAGUGGGGACGCUGGGG 22 6714 myoC-6969 - UGCAGGGAGUGGGGACGCUGGGG 23 6715 myoC-6970 - CUGCAGGGAGUGGGGACGCUGGGG 24 6716 myoC-6971 - GGU UUCCUCUCCAGCUGG 18 6717 myoC-6972 - AGGUUUCCUCUCCAGCUGG 19 6718 myoC-679 - GAGGUU UCCUCUCCAGCUGG 20 1005 myoC-6973 - AGAGGUUUCCUCUCCAGCUGG 21 6719 myoC-6974 - CAGAGGU UUCCUCUCCAGCUGG 22 6720 myoC-6975 - GCAGAGG UUUCCUCUCCAGCUGG 23 6721 myoC-6976 - GGCAGAGGUUUCCUCUCCAGCUGG 24 6722 myoC-6977 - GUCUAACGGAGAAUCUGG 18 6723 myoC-6978 - AGUCUAACGGAGAAUCUGG 19 6724 myoC-969 - UAGUCUAACGGAGAAUCUGG 20 1269 myoC-6979 - CU AGUCUAACGGAGAAUCUGG 21 6725 myoC-6980 - ACU AGUCUAACGGAGAAUCUGG 22 6726 myoC-6981 - AACU AGUCUAACGGAGAAUCUGG 23 6727 myoC-6982 - AAACUAGUCUAACGGAGAAUCUGG 24 6728 myoC-3705 - GAGACAAGUCAGUUCUGG 18 3451 myoC-3706 - CGAGACAAGUCAGUUCUGG 19 3452 myoC-192 - CCGAGACAAGUCAGUUCUGG 20 578 myoC-3707 - UCCGAGACAAGUCAGU UCUGG 21 3453 myoC-3708 - CUCCGAGACAAGUCAGU UCUGG 22 3454 myoC-3709 - CCUCCGAGACAAGUCAGUUCUGG 23 3455 myoC-3710 - UCCUCCGAGACAAGUCAGU UCUGG 24 3456 myoC-6983 - UAUCUUUUCUCUGCUUGG 18 6729 myoC-6984 - UUAUCUUUUCUCUGCU UGG 19 6730 myoC-1005 - UU UAUCUUUUCUCUGCUUGG 20 1305 myoC-6985 - UUUUAUCUUU UCUCUGCU UGG 21 6731 myoC-6986 - UU UUUAUCUUU UCUCUGCU UGG 22 6732 myoC-6987 - CUU UUUAUCUUUUCUCUGCUUGG 23 6733 myoC-6988 - CCUU UUUAUCUUU UCUCUGCU UGG 24 6734 myoC-6989 - GACACCAGAGACAAAAUG 18 6735 myoC-6990 - AG ACACC AG AG ACAAA AU G 19 6736 myoC-1825 - CAGACACCAGAGACAAAAUG 20 2039 myoC-6991 - CCAGACACCAGAGACAAAAUG 21 6737 myoC-6992 - GCCAGACACCAGAGACAAAAUG 22 6738 myoC-6993 - UGCCAGACACCAGAGACAAAAUG 23 6739 myoC-6994 - CUGCCAGACACCAGAGACAAAAUG 24 6740 myoC-6995 - GGCUCCAGAAAGGAAAUG 18 6741 myoC-6996 - AGGCUCCAGAAAGGAAAUG 19 6742 myoC-1850 - CAGGCUCCAGAAAGGAAAUG 20 2058 myoC-6997 - CCAGGCUCCAGAAAGGAAAUG 21 6743 myoC-6998 - U CC AG G CU CC AG A A AG G A A A U G 22 6744 myoC-6999 - CUCCAGGCUCCAGAAAGGAAAUG 23 6745 myoC-7000 - GCUCCAGGCUCCAGAAAGGAAAUG 24 6746 myoC-7001 - CCUCUGUCU UCCCCCAUG 18 6747 myoC-7002 - ACCUCUGUCUUCCCCCAUG 19 6748 myoC-2103 - CACCUCUGUCUUCCCCCAUG 20 2226 myoC-7003 - CCACCUCUGUCUUCCCCCAUG 21 6749 myoC-7004 - GCCACCUCUGUCU UCCCCCAUG 22 6750 myoC-7005 - GGCCACCUCUGUCUUCCCCCAUG 23 6751 myoC-7006 - UGGCCACCUCUGUCUUCCCCCAUG 24 6752 myoC-7007 - GAAGAAGUCUAU UUCAUG 18 6753 myoC-7008 - AGAAGAAGUCUAUUUCAUG 19 6754 myoC-1905 - GAGAAGAAGUCUAUUUCAUG 20 2089 myoC-7009 - GGAGAAGAAGUCUAU U UCAUG 21 6755 myoC-7010 - AGGAGAAGAAGUCUAU UUCAUG 22 6756 myoC-7011 - GAGGAGAAGAAGUCUAUU UCAUG 23 6757 myoC-7012 - GGAGGAGAAGAAGUCUAUUUCAUG 24 6758 myoC-3711 - CCUGCCUGGUGUGGGAUG 18 3457 myoC-3712 - GCCUGCCUGGUGUGGGAUG 19 3458 myoC-94 - GGCCUGCCUGGUGUGGGAUG 20 499 myoC-3713 - UGGCCUGCCUGGUGUGGGAUG 21 3459 myoC-3714 - CUGGCCUGCCUGGUGUGGGAUG 22 3460 myoC-3715 - UCUGGCCUGCCUGGUGUGGGAUG 23 3461 myoC-3716 - UUCUGGCCUGCCUGGUGUGGGAUG 24 3462 myoC-7013 - UCCAGGAGGUGGGGACUG 18 6759 myoC-7014 - UUCCAGGAGGUGGGGACUG 19 6760 myoC-1876 - AU UCCAGGAGGUGGGGACUG 20 2071 myoC-7015 - AAU UCCAGGAGGUGGGGACUG 21 6761 myoC-7016 - GAAU UCCAGGAGGUGGGGACUG 22 6762 myoC-7017 - AG AAU UCCAGGAGGUGGGGACUG 23 6763 myoC-7018 - GAGAAUUCCAGGAGGUGGGGACUG 24 6764 myoC-3717 - GCUCGACUCAGCUCCCUG 18 3463 myoC-3718 - AGCUCGACUCAGCUCCCUG 19 3464 myoC-1613 - AAGCUCGACUCAGCUCCCUG 20 1891 myoC-3719 - AAAGCUCGACUCAGCUCCCUG 21 3465 myoC-3720 - CAAAGCUCGACUCAGCUCCCUG 22 3466 myoC-3721 - CCAAAGCUCGACUCAGCUCCCUG 23 3467 myoC-3722 - ACCAAAGCUCGACUCAGCUCCCUG 24 3468 myoC-7019 - AGGUU UCCUCUCCAGCUG 18 6765 myoC-7020 - GAGGUU UCCUCUCCAGCUG 19 6766 myoC-678 - AGAGGUUUCCUCUCCAGCUG 20 1085 myoC-7021 - CAGAGGU UUCCUCUCCAGCUG 21 6767 myoC-7022 - GCAGAGGUUUCCUCUCCAGCUG 22 6768 myoC-7023 - GGCAGAGGUU UCCUCUCCAGCUG 23 6769 myoC-7024 - CGGCAGAGGU UUCCUCUCCAGCUG 24 6770 myoC-3723 - GAGACCCAGGAGGGGCUG 18 3469 myoC-3724 - GGAGACCCAGGAGGGGCUG 19 3470 myoC-1621 - AGGAGACCCAGGAGGGGCUG 20 1896 myoC-3725 - CAGGAGACCCAGGAGGGGCUG 21 3471 myoC-3726 - CCAGGAGACCCAGGAGGGGCUG 22 3472 myoC-3727 - CCCAGGAGACCCAGGAGGGGCUG 23 3473 myoC-3728 - CCCCAGGAGACCCAGGAGGGGCUG 24 3474 myoC-7025 - AGUCUAACGGAGAAUCUG 18 6771 myoC-7026 - UAGUCUAACGGAGAAUCUG 19 6772 myoC-1859 - CU AGUCUAACGGAGAAUCUG 20 2063 myoC-7027 - ACU AGUCUAACGGAGAAUCUG 21 6773 myoC-7028 - AACU AGUCUAACGGAGAAUCUG 22 6774 myoC-7029 - AAACU AGUCUAACGGAGAAUCUG 23 6775 myoC-7030 - GAAACUAGUCUAACGGAGAAUCUG 24 6776 myoC-3729 - CGAGACAAGUCAGUUCUG 18 3475 myoC-3730 - CCGAGACAAGUCAGU UCUG 19 3476 myoC-1641 - UCCGAGACAAGUCAGU UCUG 20 1908 myoC-3731 - CUCCGAGACAAGUCAGU UCUG 21 3477 myoC-3732 - CCUCCGAGACAAGUCAGUUCUG 22 3478 myoC-3733 - UCCUCCGAGACAAGUCAGUUCUG 23 3479 myoC-3734 - CU CCU CCG AG ACAAG UCAG U U CUG 24 3480 myoC-7031 - GCCAACU U AAACCCAG U G 18 6777 myoC-7032 - AGCCAACU UAAACCCAGUG 19 6778 myoC-1832 - C AG CC A AC U U AAACCCAG U G 20 2044 myoC-7033 - CC AG CCA AC U U AAACCCAG U G 21 6779 myoC-7034 - GCCAGCCAACU UAAACCCAGUG 22 6780 myoC-7035 - AG CCAG CCAACU U AAACCCAG U G 23 6781 myoC-7036 - UAGCCAGCCAACU U AAACCCAG UG 24 6782 myoC-7037 - UU UCUCAUGGAAGACGUG 18 6783 myoC-7038 - GUU UCUCAUGGAAGACGUG 19 6784 myoC-1830 - AG UUUCUCAUGGAAGACGUG 20 2042 myoC-7039 - CAG U UUCUCAUGGAAGACGUG 21 6785 myoC-7040 - ACAG UU UCUCAUGGAAGACGUG 22 6786 myoC-7041 - GACAGU UUCUCAUGGAAGACGUG 23 6787 myoC-7042 - UGACAGUUUCUCAUGGAAGACGUG 24 6788 myoC-7043 - GCUGGGGCUGAGCGGGUG 18 6789 myoC-7044 - CGCUGGGGCUGAGCGGGUG 19 6790 myoC-1886 - ACGCUGGGGCUGAGCGGGUG 20 2076 myoC-7045 - GACGCUGGGGCUGAGCGGGUG 21 6791 myoC-7046 - GG ACGCUGGGGCUGAGCGGGUG 22 6792 myoC-7047 - GGG ACGCUGGGGCUGAGCGGGUG 23 6793 myoC-7048 - GGGGACGCUGGGGCUGAGCGGGUG 24 6794 myoC-7049 - ACUAGAAAUAUAUCCUUG 18 6795 myoC-7050 - AACU AG AAAU AU AUCCU UG 19 6796 myoC-2087 - AAACU AG AAAU AU AUCCU UG 20 2215 myoC-7051 - U AAACU AG AAAU AU AUCCU UG 21 6797 myoC-7052 - AU AAACU AG AAAU AU AUCCU UG 22 6798 myoC-7053 - U AU AAACU AG AAAU AU AUCCU UG 23 6799 myoC-7054 - AUAU AAACU AG AAAU AU AUCCU UG 24 6800 myoC-7055 - UUAUCUUUUCUCUGCUUG 18 6801 myoC-7056 - UU UAUCUUU UCUCUGCU UG 19 6802 myoC-1900 - UUUUAUCUUU UCUCUGCU UG 20 2085 myoC-7057 - UUUUUAUCUU UUCUCUGCUUG 21 6803 myoC-7058 - CU UUU UAUCUUUUCUCUGCUUG 22 6804 myoC-7059 - CCUUU UUAUCUUU UCUCUGCU UG 23 6805 myoC-7060 - GCCUU UUUAUCUUU UCUCUGCUUG 24 6806 myoC-7061 - ACUAGUCUAACGGAGAAU 18 6807 myoC-7062 - AACUAGUCUAACGGAGAAU 19 6808 myoC-1857 - AAACU AGUCUAACGG AG AAU 20 2062 myoC-7063 - GAAACUAGUCUAACGGAGAAU 21 6809 myoC-7064 - GGAAACUAGUCUAACGGAGAAU 22 6810 myoC-7065 - GGGAAACUAGUCUAACGGAGAAU 23 6811 myoC-7066 - AGGGAAACUAGUCUAACGGAGAAU 24 6812 myoC-7067 - UGAAUCGUCCUGGUGCAU 18 6813 myoC-7068 - GUGAAUCGUCCUGGUGCAU 19 6814 myoC-1842 - CGUGAAUCGUCCUGGUGCAU 20 2052 myoC-7069 - CCGUGAAUCGUCCUGGUGCAU 21 6815 myoC-7070 - CCCGUGAAUCGUCCUGG UGCAU 22 6816 myoC-7071 - UCCCGUGAAUCGUCCUGGUGCAU 23 6817 myoC-7072 - UUCCCG UGAAUCGUCCUGGUGCAU 24 6818 myoC-3735 - GCCUGCCUGGUGUGGGAU 18 3481 myoC-3736 - GGCCUGCCUGGUGUGGGAU 19 3482 myoC-1597 - UGGCCUGCCUGGUGUGGGAU 20 1880 myoC-3737 - CUGGCCUGCCUGGUGUGGGAU 21 3483 myoC-3738 - UCUGGCCUGCCUGGUGUGGGAU 22 3484 myoC-3739 - UUCUGGCCUGCCUGGUGUGGGAU 23 3485 myoC-3740 - CUUCUGGCCUGCCUGGUGUGGGAU 24 3486 myoC-7073 - UU UAUU UAAUGGGAAUAU 18 6819 myoC-7074 - CU UUAUUUAAUGGGAAUAU 19 6820 myoC-1015 - CCUUUAUUUAAUGGGAAUAU 20 1315 myoC-7075 - GCCUUUAUU UAAUGGGAAUAU 21 6821 myoC-7076 - GGCCU UUAU UUAAUGGGAAUAU 22 6822 myoC-7077 - AGGCCU UUAUU UAAUGGGAAUAU 23 6823 myoC-7078 - AAGGCCU UUAUUUAAUGGGAAUAU 24 6824 myoC-7079 - AAAACCAGGUGGAGAUAU 18 6825 myoC-7080 - UAAAACCAGGUGGAGAUAU 19 6826 myoC-837 - G U AAAACCAGG UGGAGAUAU 20 994 myoC-7081 - UG UAAAACCAGGUGGAGAUAU 21 6827 myoC-7082 - GUG UAAAACCAGGUGGAGAUAU 22 6828 myoC-7083 - UGUG UAAAACCAGGUGGAGAUAU 23 6829 myoC-7084 - GUGUGUAAAACCAGGUGGAGAUAU 24 6830 myoC-3741 - UGCCUACAGCAACCUCCU 18 3487 myoC-3742 - CUGCCUACAGCAACCUCCU 19 3488 myoC-1638 - ACUGCCUACAGCAACCUCCU 20 1906 myoC-3743 - GACUGCCUACAGCAACCUCCU 21 3489 myoC-3744 - AGACUGCCUACAGCAACCUCCU 22 3490 myoC-3745 - GAGACUGCCUACAGCAACCUCCU 23 3491 myoC-3746 - GGAGACUGCCUACAGCAACCUCCU 24 3492 myoC-7085 - AGUU UUCCGUUGCUUCCU 18 6831 myoC-7086 - GAGUU UUCCGUUGCUUCCU 19 6832 myoC-1897 - GGAGUU UUCCGUUGCUUCCU 20 2083 myoC-7087 - GGGAGU UUUCCGUUGCU UCCU 21 6833 myoC-7088 - UGGGAG UUUUCCGUUGCU UCCU 22 6834 myoC-7089 - CUGGGAGUUUUCCGUUGCUUCCU 23 6835 myoC-7090 - GCUGGGAGUU UUCCGU UGCUUCCU 24 6836 myoC-7091 - GAGGGGACAGUGU UUCCU 18 6837 myoC-7092 - GGAGGGGACAGUGUUUCCU 19 6838 myoC-1862 - UGGAGGGGACAGUGUU UCCU 20 2064 myoC-7093 - CUGGAGGGGACAGUGUU UCCU 21 6839 myoC-7094 - UCUGGAGGGGACAGUGUU UCCU 22 6840 myoC-7095 - AUCUGGAGGGGACAGUGUUUCCU 23 6841 myoC-7096 - AAUCUGGAGGGGACAGUGUUUCCU 24 6842 myoC-7097 - GAGGUU UCCUCUCCAGCU 18 6843 myoC-7098 - AGAGGUUUCCUCUCCAGCU 19 6844 myoC-677 - CAGAGGUUUCCUCUCCAGCU 20 1097 myoC-7099 - GCAGAGGUU UCCUCUCCAGCU 21 6845 myoC-7100 - GGCAGAGGUUUCCUCUCCAGCU 22 6846 myoC-7101 - CGGCAGAGGUUUCCUCUCCAGCU 23 6847 myoC-7102 - CCGGCAGAGGUU UCCUCUCCAGCU 24 6848 myoC-3747 - GUGCACGU UGCUGCAGCU 18 3493 myoC-3748 - UGUGCACGU UGCUGCAGCU 19 3494 myoC-1593 - CUGUGCACGUUGCUGCAGCU 20 1877 myoC-3749 - UCUGUGCACGUUGCUGCAGCU 21 3495 myoC-3750 - UUCUGUGCACGUUGCUGCAGCU 22 3496 myoC-3751 - CU UCUGUGCACGUUGCUGCAGCU 23 3497 myoC-3752 - UCU UCUGUGCACGUUGCUGCAGCU 24 3498 myoC-3753 - GGCCAGGACAGCUCAGCU 18 3499 myoC-3754 - GGGCCAGGACAGCUCAGCU 19 3500 myoC-1601 - GGGGCCAGGACAGCUCAGCU 20 1882 myoC-3755 - GGGGGCCAGGACAGCUCAGCU 21 3501 myoC-3756 - UGGGGGCCAGGACAGCUCAGCU 22 3502 myoC-3757 - GUGGGGGCCAGGACAGCUCAGCU 23 3503 myoC-3758 - UGUGGGGGCCAGGACAGCUCAGCU 24 3504 myoC-7103 - UUUUAUCUU UUCUCUGCU 18 6849 myoC-7104 - UU UUUAUCU UUUCUCUGCU 19 6850 myoC-1004 - CUUUU UAUCUUUUCUCUGCU 20 1304 myoC-7105 - CCUU UUUAUCUUUUCUCUGCU 21 6851 myoC-7106 - GCCUU UUUAUCUUU UCUCUGCU 22 6852 myoC-7107 - AGCCUUUU UAUCUUUUCUCUGCU 23 6853 myoC-7108 - GAGCCU UUU UAUCUUU UCUCUGCU 24 6854 myoC-7109 - CAGUAUAUAUAAACCUCU 18 6855 myoC-7110 - CCAGUAUAUAUAAACCUCU 19 6856 myoC-2104 - CCCAGUAUAUAUAAACCUCU 20 2227 myoC-7111 - CCCCAGUAUAUAUAAACCUCU 21 6857 myoC-7112 - UCCCCAGUAUAUAUAAACCUCU 22 6858 myoC-7113 - CUCCCCAGUAUAUAUAAACCUCU 23 6859 myoC-7114 - GCUCCCCAGUAUAUAUAAACCUCU 24 6860 myoC-7115 - GU UUUGUUAUCACUCUCU 18 6861 myoC-7116 - UGUUUUGUUAUCACUCUCU 19 6862 myoC-686 - UUGUUU UGU UAUCACUCUCU 20 1124 myoC-7117 - GUUGUUU UGU UAUCACUCUCU 21 6863 myoC-7118 - GGU UGUUUUGU UAUCACUCUCU 22 6864 myoC-7119 - UGGUUGUUUUGUUAUCACUCUCU 23 6865 myoC-7120 - CUGGUUGUU UUGUUAUCACUCUCU 24 6866 myoC-3759 - AAACCCAAACCAG AG AG U 18 3505 myoC-3760 - GAAACCCAAACCAGAGAGU 19 3506 myoC-106 - GGAAACCCAAACCAGAGAGU 20 479 myoC-3761 - U G G AAACCCAAACCAG AG AG U 21 3507 myoC-3762 - CUGG AAACCCAAACCAG AG AGU 22 3508 myoC-3763 - GCUGG AAACCCAAACCAG AG AG U 23 3509 myoC-3764 - AGCUGGAAACCCAAACCAGAGAGU 24 3510 myoC-7121 - GUGGGGACUGCAGGGAGU 18 6867 myoC-7122 - GGUGGGGACUGCAGGGAGU 19 6868 myoC-986 - AGGUGGGGACUGCAGGGAGU 20 1286 myoC-7123 - GAGGUGGGGACUGCAGGGAGU 21 6869 myoC-7124 - GGAGGUGGGGACUGCAGGGAGU 22 6870 myoC-7125 - AGGAGGUGGGGACUGCAGGGAGU 23 6871 myoC-7126 - CAGGAGGUGGGGACUGCAGGGAGU 24 6872 myoC-7127 - AGGAGAAU UCCAGGAGGU 18 6873 myoC-7128 - CAGGAGAAUUCCAGGAGGU 19 6874 myoC-981 - CCAGGAGAAUUCCAGGAGGU 20 1281 myoC-7129 - UCCAGGAGAAU UCCAGGAGGU 21 6875 myoC-7130 - GUCCAGGAGAAUUCCAGGAGGU 22 6876 myoC-7131 - CG U CC AG G AG A A U U CC AG G AG G U 23 6877 myoC-7132 - ACGUCCAGGAGAAU UCCAGGAGGU 24 6878 myoC-3771 - GCUUCUGGCCUGCCUGGU 18 3517 myoC-3772 - UGCUUCUGGCCUGCCUGGU 19 3518 myoC-1595 - CUGCU UCUGGCCUGCCUGGU 20 1879 myoC-3773 - GCUGCUUCUGGCCUGCCUGGU 21 3519 myoC-3774 - UGCUGCUUCUGGCCUGCCUGGU 22 3520 myoC-3775 - CUGCUGCU UCUGGCCUGCCUGGU 23 3521 myoC-3776 - GCUGCUGCU UCUGGCCUGCCUGGU 24 3522 myoC-3777 - CUGCCUGGUGUGGGAUGU 18 3523 myoC-3778 - CCUGCCUGGUGUGGGAUGU 19 3524 myoC-95 - GCCUGCCUGGUGUGGGAUGU 20 500 myoC-3779 - GGCCUGCCUGGUGUGGGAUGU 21 3525 myoC-3780 - UGGCCUGCCUGGUGUGGGAUGU 22 3526 myoC-3781 - CUGGCCUGCCUGGUGUGGGAUGU 23 3527 myoC-3782 - UCUGGCCUGCCUGGUG UGGGAUGU 24 3528 myoC-7133 - G A A AC U CCA A AC AG AC U U 18 6879 myoC-7134 - AGAAACUCCAAACAGACUU 19 6880 myoC-2098 - AAGAAACUCCAAACAGACUU 20 2222 myoC-7135 - AAAG AAACUCCAAACAG ACU U 21 6881 myoC-7136 - AAAAG AAACUCCAAACAG ACU U 22 6882 myoC-7137 - A A A A AG A A AC U CCA A AC AG AC U U 23 6883 myoC-7138 - U AAAAAG AAACUCCAAACAG ACU U 24 6884 myoC-7139 - UCUUUUCUUUCAUGUCU U 18 6885 myoC-7140 - GUCU UUUCUUUCAUGUCUU 19 6886 myoC-1921 - AGUCUU UUCUUUCAUGUCUU 20 2099 myoC-7141 - GAGUCUU UUCUU UCAUGUCUU 21 6887 myoC-7142 - GGAGUCUUUUCUUUCAUGUCUU 22 6888 myoC-7143 - UGGAGUCUUUUCUUUCAUGUCU U 23 6889 myoC-7144 - CUGGAGUCUU UUCUU UCAUG UCUU 24 6890 myoC-3783 - CUCCGAGACAAGUCAGUU 18 3529 myoC-3784 - CCUCCGAGACAAGUCAG U U 19 3530 myoC-1639 - UCCUCCGAGACAAGUCAGUU 20 1907 myoC-3785 - CU CCU CCG AG ACAAG UCAG U U 21 3531 myoC-3786 - CCUCCUCCGAGACAAGUCAGU U 22 3532 myoC-3787 - ACCU CCU CCG AG ACAAG UCAG U U 23 3533 myoC-3788 - AACCUCCUCCGAGACAAGUCAGUU 24 3534
Table 10E provides exemplary targeting domains for knocking down the MYOC gene selected according to the fifth tier parameters. The targeting domains bind within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site), start with a 5 ' G and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 10E
5th Tier
DNA Target Site gRNA Name Targeting Domain
Strand Length Seq ID myoC-7145 + GCAGAACCAGAAAGAAAA 18 6891 myoC-7146 + G G C AG A ACC AG A A AG A A A A 19 6892 myoC-7147 + GU UUUCUUCCUGUUAAAAGAAA 22 6893 myoC-7148 + GCUAACUCCACAGAGAAA 18 6894 myoC-7149 + GCUGCUAACUCCACAGAGAAA 21 6895 myoC-7150 + GUGCUGCUAACUCCACAGAGAAA 23 6896 myoC-7151 + GAACU UG AG ACAU U UACAA 19 6897 myoC-7152 + GCCUG AACU UG AG ACAU U UACAA 23 6898 myoC-1173 + GUUUAUGGCUCUAUUCGCAA 20 1473 myoC-7153 + GAGUUUAUGGCUCUAU UCGCAA 22 6899 myoC-7154 + GU UUGUUUACAGCUGACCA 19 6900 myoC-7155 + GUGUUUGUUUACAGCUGACCA 21 6901 myoC-7156 + GGUGUUUGUU UACAGCUGACCA 22 6902 myoC-7157 + GGG UGUU UGU UUACAGCUGACCA 23 6903 myoC-7158 + GUCAAU UCCCACUGCCCUUGA 21 6904 myoC-7159 + GGUCAAUUCCCACUGCCCUUGA 22 6905 myoC-7160 + GUGGUCAAUUCCCACUGCCCUUGA 24 6906 myoC-7161 + GCCCUGCCUCCUAGAACC 18 6907 myoC-7162 + GGUCAAUUCCCACUGCCC 18 6908 myoC-2248 + GUGGUCAAUUCCCACUGCCC 20 2332 myoC-7163 + GCAUUGUGGCUCUCGGUCC 19 6909 myoC-7164 + GAAGCAUUGUGGCUCUCGGUCC 22 6910 myoC-7165 + GU UCACAGAACACGAGAGCUGC 22 6911 myoC-7166 + GUGUUCACAGAACACGAGAGCUGC 24 6912 myoC-7167 + GCCCUGGCAGACUCACCUC 19 6913 myoC-3801 + GCACAGCCCGAGCAGUGUC 19 3547 myoC-1700 + GGCACAGCCCGAGCAGUGUC 20 1952 myoC-3802 + GUGGCACAGCCCGAGCAGUGUC 22 3548 myoC-3803 + GGUGGCACAGCCCGAGCAGUGUC 23 3549 myoC-1199 + GCAGUCACUGCUGAGCUGCG 20 1499 myoC-7168 + GUCAGCAGUCACUGCUGAGCUGCG 24 6914 myoC-7169 + GCCAAGUCCACCACAGGG 18 6915 myoC-7170 + G CAU AAG CCA AG U CCACCACAG G G 24 6916 myoC-7171 + GGAAGGAAAAUGUGGCUG 18 6917 myoC-7172 + GGGAAGGAAAAUGUGGCUG 19 6918 myoC-7173 + GCUUAGGGAAGGAAAAUGUGGCUG 24 6919 myoC-7174 + GCCAUAUCACCUGCUGAACU 20 6920 myoC-7175 + GAGCCAUAUCACCUGCUGAACU 22 6921 myoC-7176 + GGUACUGUUAU UACCACU 18 6922 myoC-7177 + GUUACUACCUUGUGACUUGCU 21 6923 myoC-7178 + GCUGCGUGGGGUGCUGGU 18 6924 myoC-2243 + GAGCUGCGUGGGGUGCUGGU 20 2328 myoC-7179 + GCUGAGCUGCGUGGGGUGCUGGU 23 6925 myoC-7180 + GAAUCUGUUUGGCUUUACUCUU 22 6926 myoC-7181 + GUCUAAU UUCAAAGUAGUU 19 6927 myoC-2290 + GGUCUAAUUUCAAAGUAGUU 20 2368 myoC-7182 + GAGGUCUAAUUUCAAAGUAGUU 22 6928 myoC-7183 + GGAGGUCUAAUUUCAAAGUAGUU 23 6929 myoC-7184 + GGGUACUAGUCUCAUU UU 18 6930 myoC-7185 - GCAU U UGCCAAU AACCAAA 19 6931 myoC-1969 - GGCAUUUGCCAAU A ACC A A A 20 2127 myoC-7186 - G A ACC A A U C A A A U A AG A A 18 6932 myoC-7187 - G C AG A ACC A A U C A A A U A AG A A 21 6933 myoC-2059 - GU UCUUGGCAUGCACACACA 20 2190 myoC-7188 - GGU UCUUGGCAUGCACACACA 21 6934 myoC-7189 - GAGGU UCUUGGCAUGCACACACA 23 6935 myoC-7190 - GCAGUGACUGCUGACAGCA 19 6936 myoC-7191 - GCUCAGCAGUGACUGCUGACAGCA 24 6937 myoC-7192 - G C A A A AG G AG A A A U A A A AG G A 21 6938 myoC-7193 - GCAGUGGGAAUUGACCAC 18 6939 myoC-7194 - GGCAG UGGGAAUUGACCAC 19 6940 myoC-1128 - GGGCAGUGGGAAUUGACCAC 20 1428 myoC-7195 - GGU UUAUUAAUGUAAAGC 18 6941 myoC-7196 - GGGUUUAUUAAUGUAAAGC 19 6942 myoC-7197 - GAUUAUAGUCCACGUGAUC 19 6943 myoC-1998 - GGAUUAUAGUCCACGUGAUC 20 2146 myoC-7198 - GGGAUUAUAGUCCACGUGAUC 21 6944 myoC-1962 - GACAGGAAGGCAGGCAGAAG 20 2121 myoC-7199 - GGACAGGAAGGCAGGCAGAAG 21 6945 myoC-7200 - G G G AC AG GAAG G C AG G CAG AAG 22 6946 myoC-7201 - GGGGACAGGAAGGCAGGCAGAAG 23 6947 myoC-7202 - GGGGGACAGGAAGGCAGGCAGAAG 24 6948 myoC-7203 - GCACAGCUAGCACAAGACAG 20 6949 myoC-7204 - GACUGCACAGCUAGCACAAGACAG 24 6950 myoC-7205 - GGAGGAGAAG A A A A AG AG 18 6951 myoC-7206 - GGGAGGAGAAGAAAAAGAG 19 6952 myoC-1122 - GGGGAGGAGAAG A A A A AG AG 20 1422 myoC-7207 - GCAGGGGAGGAGAAGAAAAAGAG 23 6953 myoC-7208 - GUGUUUCUCCACUCUGGAG 19 6954 myoC-7209 - GCUCUCCCUGGAGCCUGG 18 6955 myoC-7210 - GAAUGCUCUCCCUGGAGCCUGG 22 6956 myoC-7211 - GGAAUGCUCUCCCUGGAGCCUGG 23 6957 myoC-3851 - GCUCCAGAGAAGGUAAGAAUG 21 3597 myoC-3852 - GGCUCCAGAGAAGGUAAGAAUG 22 3598 myoC-3210 - GCGACUAAGGCAAGAAAAU 19 2956 myoC-3211 - GAAGCGACUAAGGCAAG A A A A U 22 2957 myoC-7212 - GCUUAACUGCAGAACCAAUCAAAU 24 6958 myoC-7213 - GUCCAGAAAGCCUGUGAAU 19 6959 myoC-7214 - GAAAUCUGCCGCUUCUAU 18 6960 myoC-7215 - GGAAAUCUGCCGCUUCUAU 19 6961 myoC-1210 - GGGAAAUCUGCCGCUUCUAU 20 1510 myoC-7216 - GGGGAAAUCUGCCGCU UCUAU 21 6962 myoC-7217 - GGGGGAAAUCUGCCGCUUCUAU 22 6963 myoC-7218 - GGGGGGAAAUCUGCCGCUUCUAU 23 6964 myoC-3853 - GAAUGCAGAGUGGGGGGACU 20 3599 myoC-3854 - GUAAGAAUGCAGAGUGGGGGGACU 24 3600 myoC-7219 - GCAAGACGGUCGAAAACCU 19 6965 myoC-7220 - GAUACACAG UUGUUUUAAAGCU 22 6966 myoC-7221 - GCUUUU UGU UUUU UCUCU 18 6967 myoC-7222 - G AU UCAU UCAAGGGCAG U 18 6968 myoC-7223 - GACAGAUUCAUUCAAGGGCAGU 22 6969 myoC-3859 - GCCACCAGGCUCCAGAGAAGGU 22 3605 myoC-3860 - GUGCCACCAGGCUCCAGAGAAGGU 24 3606 myoC-7224 - GCUUCAUUUAGAUUAGUGGU U 21 6970 myoC-7225 - GAGCUUCAUUUAGAUUAGUGGUU 23 6971 Table 10F provides exemplary targeting domains for knocking down the MYOC gene selected according to the six tier parameters. The targeting domains bind within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 10F
6th Tier
DNA Target Site
gRNA Name Targeting Domain
Strand Length Seq ID myoC-7226 + CUGAGCAAAGGU UCAAAA 18 6972 myoC-7227 + U CU G AG C A A AG G U U C A A A A 19 6973 myoC-7228 + AUCUGAGCAAAGGUUCAAAA 20 6974 myoC-7229 + A A U C U G AG C A A AG G U U C A A A A 21 6975 myoC-7230 + C A A UCUGAGCAAAGGUU C A A A A 22 6976 myoC-7231 + AC A A U C U G AG C A A AG G U U C A A A A 23 6977 myoC-7232 + AACAAUCUGAG C A A AG G U U C A A A A 24 6978 myoC-2206 + U G G C AG A ACC AG A A AG A A A A 20 2301 myoC-7233 + A U G G C AG A ACC AG A A AG A A A A 21 6979 myoC-7234 + AAUGGCAGAACCAGAAAGAAAA 22 6980 myoC-7235 + CA A U G G C AG A ACC AG A A AG A A A A 23 6981 myoC-7236 + CC AA U G G C AG A ACC AG A A AG A AAA 24 6982 myoC-7237 + UCU UCCUGUU AAA AG AAA 18 6983 myoC-7238 + UUCUUCCUGUUAAAAGAAA 19 6984 myoC-1190 + U UUCUUCCUGUUAAAAGAAA 20 1490 myoC-7239 + U UUUCU UCCUGUUAAAAGAAA 21 6985 myoC-7240 + UGUUUUCUUCCUGU UAAAAGAAA 23 6986 myoC-7241 + AUGUU UUCUUCCUGUUAAAAGAAA 24 6987 myoC-7242 + UGCUAACUCCACAGAGAAA 19 6988 myoC-2260 + CUGCUAACUCCACAGAGAAA 20 2342 myoC-7243 + UGCUGCUAACUCCACAGAGAAA 22 6989 myoC-7244 + UGUGCUGCUAACUCCACAGAGAAA 24 6990 myoC-7245 + AACUUGAGACAUUUACAA 18 6991 myoC-2272 + UGAACUUGAGACAUUUACAA 20 2352 myoC-7246 + CU G AACU UG AG ACAU U UACAA 21 6992 myoC-7247 + CCUGAACUUGAGACAUU UACAA 22 6993 myoC-7248 + AGCCU G AACU UG AG ACAU U U ACAA 24 6994 myoC-7249 + U UAUGGCUCUAUUCGCAA 18 6995 myoC-7250 + U UUAUGGCUCUAUUCGCAA 19 6996 myoC-7251 + AGUUUAUGGCUCUAU UCGCAA 21 6997 myoC-7252 + UGAGUUUAUGGCUCUAUUCGCAA 23 6998 myoC-7253 + UUGAGUUUAUGGCUCUAUUCGCAA 24 6999 myoC-7254 + U CAACA U CCCCCCU CACA 18 7000 myoC-7255 + CU CA ACAU CCCCCCU CACA 19 7001 myoC-2225 + U CU CAACAU CCCCCCU CACA 20 2315 myoC-7256 + CU CU CAACAU CCCCCCU CACA 21 7002 myoC-7257 + CCUCUCAACAUCCCCCCUCACA 22 7003 myoC-7258 + CCCUCUCAACAUCCCCCCUCACA 23 7004 myoC-7259 + CCCCUCUCAACAUCCCCCCUCACA 24 7005 myoC-7260 + U UUGUUUACAGCUGACCA 18 7006 myoC-2271 + UGUUUGUUUACAGCUGACCA 20 2351 myoC-7261 + UGGGUGUUUGU UUACAGCUGACCA 24 7007 myoC-7262 + AAU UCCCACUGCCCUUGA 18 7008 myoC-7263 + CAAUUCCCACUGCCCUUGA 19 7009 myoC-2247 + UCAAUUCCCACUGCCCU UGA 20 2331 myoC-7264 + UGGUCAAUUCCCACUGCCCUUGA 23 7010 myoC-7265 + AGCCCUGCCUCCUAGAACC 19 7011 myoC-2250 + UAGCCCUGCCUCCUAGAACC 20 2334 myoC-7266 + AUAGCCCUGCCUCCUAGAACC 21 7012 myoC-7267 + UAUAGCCCUGCCUCCUAGAACC 22 7013 myoC-7268 + AUAUAGCCCUGCCUCCUAGAACC 23 7014 myoC-7269 + AAUAUAGCCCUGCCUCCUAGAACC 24 7015 myoC-7270 + UGGUCAAUUCCCACUGCCC 19 7016 myoC-7271 + UGUGGUCAAU UCCCACUGCCC 21 7017 myoC-7272 + CUGUGGUCAAUUCCCACUGCCC 22 7018 myoC-7273 + CCUGUGGUCAAUUCCCACUGCCC 23 7019 myoC-7274 + CCCUGUGGUCAAUUCCCACUGCCC 24 7020 myoC-7275 + CAU UGUGGCUCUCGGUCC 18 7021 myoC-1081 + AGCAUUGUGGCUCUCGGUCC 20 1381 myoC-7276 + AAGCAUUGUGGCUCUCGGUCC 21 7022 myoC-7277 + UGAAGCAU UGUGGCUCUCGGUCC 23 7023 myoC-7278 + CUGAAGCAUUGUGGCUCUCGGUCC 24 7024 myoC-7279 + AGUCAGCAAGACCUAGGC 18 7025 myoC-7280 + UAGUCAGCAAGACCUAGGC 19 7026 myoC-2268 + AU AGUCAGCAAGACCUAGGC 20 2348 myoC-7281 + UAU AGUCAGCAAGACCUAGGC 21 7027 myoC-7282 + AUAU AGUCAGCAAGACCUAGGC 22 7028 myoC-7283 + C A U A U AG U C AG C A AG ACCU AG G C 23 7029 myoC-7284 + UCAUAU AGUCAGCAAGACCUAGGC 24 7030 myoC-7285 + ACAGAACACGAGAGCUGC 18 7031 myoC-7286 + CACAGAACACGAGAGCUGC 19 7032 myoC-2218 + UCACAGAACACGAGAGCUGC 20 2310 myoC-7287 + U UCACAG AACACG AG AGCUGC 21 7033 myoC-7288 + UGU UCACAGAACACGAGAGCUGC 23 7034 myoC-7289 + CCCUGGCAGACUCACCUC 18 7035 myoC-2278 + UGCCCUGGCAGACUCACCUC 20 2357 myoC-7290 + CUGCCCUGGCAGACUCACCUC 21 7036 myoC-7291 + ACUGCCCUGGCAGACUCACCUC 22 7037 myoC-7292 + AACUGCCCUGGCAGACUCACCUC 23 7038 myoC-7293 + AAACUGCCCUGGCAGACUCACCUC 24 7039 myoC-3904 + CACAGCCCGAGCAGUGUC 18 3650 myoC-3905 + UGGCACAGCCCGAGCAGUGUC 21 3651 myoC-3906 + UGGUGGCACAGCCCGAGCAGUGUC 24 3652 myoC-7294 + AGUCACUGCUGAGCUGCG 18 7040 myoC-7295 + CAGUCACUGCUGAGCUGCG 19 7041 myoC-7296 + AGCAGUCACUGCUGAGCUGCG 21 7042 myoC-7297 + CAGCAGUCACUGCUGAGCUGCG 22 7043 myoC-7298 + UCAGCAGUCACUGCUGAGCUGCG 23 7044 myoC-7299 + AGCCAAGUCCACCACAGGG 19 7045 myoC-2204 + A AG CCA AG U CCACCACAGG G 20 2299 myoC-7300 + UAAGCCAAGUCCACCACAGGG 21 7046 myoC-7301 + A U A AG CCA AG UCCACCACAGGG 22 7047 myoC-7302 + CAUAAGCCAAGUCCACCACAGGG 23 7048 myoC-2235 + AGGGAAGGAAAAUGUGGCUG 20 2323 myoC-7303 + UAGGGAAGGAAAAUGUGGCUG 21 7049 myoC-7304 + UU AGGGAAGGAAAAUGUGGCUG 22 7050 myoC-7305 + CU UAGGGAAGGAAAAUGUGGCUG 23 7051 myoC-7306 + CAUAUCACCUGCUGAACU 18 7052 myoC-7307 + CCAUAUCACCUGCUGAACU 19 7053 myoC-7308 + AGCCAUAUCACCUGCUGAACU 21 7054 myoC-7309 + CGAGCCAUAUCACCUGCUGAACU 23 7055 myoC-7310 + ACGAGCCAUAUCACCUGCUGAACU 24 7056 myoC-7311 + AGGUACUGUUAU UACCACU 19 7057 myoC-2289 + CAGGUACUGUUAU UACCACU 20 2367 myoC-7312 + ACAGGUACUGUUAUUACCACU 21 7058 myoC-7313 + CACAGGUACUGU UAUUACCACU 22 7059 myoC-7314 + UCACAGGUACUGUUAUUACCACU 23 7060 myoC-7315 + AUCACAGGUACUGU UAUUACCACU 24 7061 myoC-7316 + ACUACCUUGUGACUUGCU 18 7062 myoC-7317 + UACUACCUUGUGACUUGCU 19 7063 myoC-2256 + U UACUACCU UGUGACUUGCU 20 2339 myoC-7318 + AGUUACUACCUUGUGACUUGCU 22 7064 myoC-7319 + CAGU UACUACCUUGUGACUUGCU 23 7065 myoC-7320 + UCAG UUACUACCUUGUGACUUGCU 24 7066 myoC-7321 + AGCUGCGUGGGGUGCUGGU 19 7067 myoC-7322 + UGAGCUGCGUGGGGUGCUGGU 21 7068 myoC-7323 + CUGAGCUGCGUGGGGUGCUGGU 22 7069 myoC-7324 + UGCUGAGCUGCGUGGGGUGCUGGU 24 7070 myoC-7325 + CUGUUUGGCUU UACUCUU 18 7071 myoC-7326 + UCUGUUUGGCUUUACUCUU 19 7072 myoC-1189 + AUCUGUUUGGCUUUACUCUU 20 1489 myoC-7327 + AAUCUG UUUGGCUUUACUCUU 21 7073 myoC-7328 + UGAAUCUGUU UGGCU UUACUCUU 23 7074 myoC-7329 + U UGAAUCUGUU UGGCU UUACUCUU 24 7075 myoC-7330 + UCUAAUUUCAAAGUAGUU 18 7076 myoC-7331 + AGGUCUAAU UUCAAAGUAGUU 21 7077 myoC-7332 + AGGAGGUCUAAUUUCAAAGUAGUU 24 7078 myoC-7333 + CU UGCUCUGGCCCAGUU U 18 7079 myoC-7334 + ACU UGCUCUGGCCCAGU UU 19 7080 myoC-2241 + CACU UGCUCUGGCCCAG UUU 20 2326 myoC-7335 + CCACUUGCUCUGGCCCAGUUU 21 7081 myoC-7336 + UCCACUUGCUCUGGCCCAGUUU 22 7082 myoC-7337 + UUCCACUUGCUCUGGCCCAGUUU 23 7083 myoC-7338 + UUUCCACU UGCUCUGGCCCAGUUU 24 7084 myoC-7339 + AGGGUACUAGUCUCAU UUU 19 7085 myoC-2270 + AAGGGUACUAGUCUCAUUU U 20 2350 myoC-7340 + AAAGGGUACUAGUCUCAUU UU 21 7086 myoC-7341 + CAAAGGGUACUAGUCUCAUUUU 22 7087 myoC-7342 + CCAAAGGGUACUAGUCUCAU UUU 23 7088 myoC-7343 + ACCAAAGGGUACUAGUCUCAUUUU 24 7089 myoC-7344 - CAU UUGCCAAUAACCAAA 18 7090 myoC-7345 - UGGCAUUUGCCAAU A ACC A A A 21 7091 myoC-7346 - AUGGCAUU UGCCAAUAACCAAA 22 7092 myoC-7347 - AAUGGCAUUUGCCAAU A ACC A A A 23 7093 myoC-7348 - CAAUGGCAUU UG CCA A U A ACC A A A 24 7094 myoC-7349 - AG A ACC A A U C A A A U A AG A A 19 7095 myoC-2031 - C AG A ACC A A U C A A A U A AG A A 20 2166 myoC-7350 - U G C AG A ACC A A U C A A A U A AG A A 22 7096 myoC-7351 - C U G C AG A ACC A A U C A A A U A AG A A 23 7097 myoC-7352 - AC U G C AG A ACC A A U C A A A U A AG A A 24 7098 myoC-7353 - UCU UGGCAUGCACACACA 18 7099 myoC-7354 - UUCU UGGCAUGCACACACA 19 7100 myoC-7355 - AGGUUCUUGGCAUGCACACACA 22 7101 myoC-7356 - UGAGGUUCU UGGCAUGCACACACA 24 7102 myoC-7357 - CAGUGACUGCUGACAGCA 18 7103 myoC-1117 - AGCAGUGACUGCUGACAGCA 20 1417 myoC-7358 - C AG C AG U G AC U G C U G AC AG C A 21 7104 myoC-7359 - UCAGCAGUGACUGCUGACAGCA 22 7105 myoC-7360 - CUCAGCAGUGACUGCUGACAGCA 23 7106 myoC-7361 - A A AG G AG AAA U A A A AG G A 18 7107 myoC-7362 - A A A AG G AG A A A U A A A AG G A 19 7108 myoC-7363 - C A A A AG G AG A A A U A A A AG G A 20 7109 myoC-7364 - AG C A A A AG GAG AAA U A A A AG G A 22 7110 myoC-7365 - U AG C A A A AG G AG A A A U A A A AG G A 23 7111 myoC-7366 - AUAGCAAAAGGAGAAAUAAAAGGA 24 7112 myoC-7367 - AGGGCAGUGGGAAUUGACCAC 21 7113 myoC-7368 - AAGGGCAGUGGGAAUUGACCAC 22 7114 myoC-7369 - CAAGGGCAGUGGGAAUUGACCAC 23 7115 myoC-7370 - UCAAGGGCAGUGGGAAUUGACCAC 24 7116 myoC-1168 - UGGGU UUAUUAAUGUAAAGC 20 1468 myoC-7371 - UUGGGUUUAUUAAUGUAAAGC 21 7117 myoC-7372 - UUUGGGUUUAUUAAUGUAAAGC 22 7118 myoC-7373 - CUU UGGGUU UAUUAAUGUAAAGC 23 7119 myoC-7374 - UCUUUGGGU UUAUUAAUGUAAAGC 24 7120 myoC-7375 - AU UAUAGUCCACGUGAUC 18 7121 myoC-7376 - AGGGAUUAUAGUCCACGUGAUC 22 7122 myoC-7377 - CAGGG AUUAUAGUCCACGUGAUC 23 7123 myoC-7378 - ACAGGGAU UAUAGUCCACGUGAUC 24 7124 myoC-7379 - AUAUUUU UCCUUUACAAG 18 7125 myoC-7380 - UAUAUUUU UCCUUUACAAG 19 7126 myoC-2014 - CUAUAUU UUUCCU UUACAAG 20 2152 myoC-7381 - ACUAUAUUUU UCCUUUACAAG 21 7127 myoC-7382 - UACUAUAUUUU UCCUU UACAAG 22 7128 myoC-7383 - AUACUAUAU UUUUCCUUUACAAG 23 7129 myoC-7384 - AAUACUAUAUU UUUCCUUUACAAG 24 7130 myoC-7385 - CAGGAAGGCAGGCAGAAG 18 7131 myoC-7386 - ACAGGAAGGCAGGCAGAAG 19 7132 myoC-7387 - ACAGCUAGCACAAGACAG 18 7133 myoC-7388 - C AC AG C U AG C AC A AG AC AG 19 7134 myoC-7389 - UGCACAGCUAG C AC A AG AC AG 21 7135 myoC-7390 - CUGCACAGCUAGCACAAGACAG 22 7136 myoC-7391 - AC U G C AC AG C U AG C AC A AG AC AG 23 7137 myoC-7392 - AGGGGAGGAGAAGAAAAAGAG 21 7138 myoC-7393 - CAGGGGAGGAGAAGAAAAAGAG 22 7139 myoC-7394 - CGCAGGGGAGGAGAAGAAAAAGAG 24 7140 myoC-7395 - UGU UUCUCCACUCUGGAG 18 7141 myoC-2035 - UGUGUUUCUCCACUCUGGAG 20 2169 myoC-7396 - CUGUGUUUCUCCACUCUGGAG 21 7142 myoC-7397 - ACUGUGUUUCUCCACUCUGGAG 22 7143 myoC-7398 - AACUGUGUUUCUCCACUCUGGAG 23 7144 myoC-7399 - AAACUGUGUUUCUCCACUCUGGAG 24 7145 myoC-7400 - UGAAAACAUCUUUCUGAG 18 7146 myoC-7401 - UUGAAAACAUCUUUCUGAG 19 7147 myoC-2057 - UUUGAAAACAUCUUUCUGAG 20 2188 myoC-7402 - AUUUGAAAACAUCUU UCUGAG 21 7148 myoC-7403 - UAUU UGAAAACAUCU UUCUGAG 22 7149 myoC-7404 - AUAUUUGAAAACAUCU UUCUGAG 23 7150 myoC-7405 - UAUAUU UGAAAACAUCUUUCUGAG 24 7151 myoC-7406 - CUGUGAUUCUCUGUGAGG 18 7152 myoC-7407 - CCUGUGAUUCUCUGUGAGG 19 7153 myoC-1038 - CCCUGUGAUUCUCUGUGAGG 20 1338 myoC-7408 - UCCCUGUGAUUCUCUGUGAGG 21 7154 myoC-7409 - U UCCCUGUGAU UCUCUGUGAGG 22 7155 myoC-7410 - CUUCCCUGUGAUUCUCUGUGAGG 23 7156 myoC-7411 - ACU UCCCUGUGAUUCUCUGUGAGG 24 7157 myoC-7412 - UGCUCUCCCUGGAGCCUGG 19 7158 myoC-2078 - AUGCUCUCCCUGGAGCCUGG 20 2207 myoC-7413 - AAUGCUCUCCCUGGAGCCUGG 21 7159 myoC-7414 - AGGAAUGCUCUCCCUGGAGCCUGG 24 7160 myoC-4035 - CCAGAGAAGGUAAGAAUG 18 3781 myoC-4036 - UCCAGAGAAGGUAAGAAUG 19 3782 myoC-4037 - CUCCAGAGAAGGUAAGAAUG 20 3783 myoC-4038 - AGGCUCCAGAGAAGGUAAGAAUG 23 3784 myoC-4039 - CAGGCUCCAGAGAAGGUAAGAAUG 24 3785 myoC-7415 - UUGAAAU UAGACCUCCUG 18 7161 myoC-7416 - UUUGAAAUUAGACCUCCUG 19 7162 myoC-2053 - CUU UGAAAUUAGACCUCCUG 20 2184 myoC-7417 - ACU UUGAAAU U AG ACCUCCUG 21 7163 myoC-7418 - UACU UUGAAAU UAGACCUCCUG 22 7164 myoC-7419 - CUACU UUGAAAUUAGACCUCCUG 23 7165 myoC-7420 - ACUACUU UGAAAUUAGACCUCCUG 24 7166 myoC-7421 - AGGAACUCUUUUUCUCUG 18 7167 myoC-7422 - UAGGAACUCUUUU UCUCUG 19 7168 myoC-1148 - UUAGGAACUCUUU UUCUCUG 20 1448 myoC-7423 - AUUAGGAACUCUU UUUCUCUG 21 7169 myoC-7424 - UAU UAGGAACUCU UUU UCUCUG 22 7170 myoC-7425 - UUAU UAGGAACUCU UU UUCUCUG 23 7171 myoC-7426 - CUUAUUAGGAACUCUU UUUCUCUG 24 7172 myoC-3239 - CG AC U A AG G C A AG A A A A U 18 2985 myoC-1648 - AGCGACUAAGGCAAGAAAAU 20 1914 myoC-3240 - AAGCGACUAAGG C A AG A A A A U 21 2986 myoC-3241 - AGAAGCGACUAAGGCAAGAAAAU 23 2987 myoC-3242 - AAGAAGCGACUAAGGCAAG A A A A U 24 2988 myoC-7427 - CUGCAGAACCAAUCAAAU 18 7173 myoC-7428 - AC U G C AG A ACC A A U C A A A U 19 7174 myoC-2030 - A AC U G C AG A ACC A A U C A A A U 20 2165 myoC-7429 - UAACUGCAGAACCAAUCAAAU 21 7175 myoC-7430 - UUAACUGCAGAACCAAUCAAAU 22 7176 myoC-7431 - CU UAACUGCAGAACCAAUCAAAU 23 7177 myoC-7432 - U CC AG A A AG CCUGUGAAU 18 7178 myoC-2044 - AGUCCAGAAAGCCUGUGAAU 20 2176 myoC-7433 - CAG U CC AG A A AG CC U G U G A A U 21 7179 myoC-7434 - ACAGUCCAGAAAGCCUGUGAAU 22 7180 myoC-7435 - UACAGUCCAGAAAGCCUGUGAAU 23 7181 myoC-7436 - CUACAGUCCAGAAAGCCUGUGAAU 24 7182 myoC-7437 - AGGGGGGAAAUCUGCCGCUUCUAU 24 7183 myoC-4047 - AUGCAGAGUGGGGGGACU 18 3793 myoC-4048 - AAUGCAGAGUGGGGGGACU 19 3794 myoC-4049 - AGAAUGCAGAGUGGGGGGACU 21 3795 myoC-4050 - AAG AAUGCAGAGUGGGGGGACU 22 3796 myoC-4051 - UAAG AAUGCAGAGUGGGGGGACU 23 3797 myoC-7438 - CAAGACGGUCGAAAACCU 18 7184 myoC-1025 - UGCAAGACGGUCGAAAACCU 20 1325 myoC-7439 - AUGCAAGACGGUCGAAAACCU 21 7185 myoC-7440 - UAUGCAAGACGGUCGAAAACCU 22 7186 myoC-7441 - UU AUGCAAGACGGUCGAAAACCU 23 7187 myoC-7442 - CU UAUGCAAGACGGUCGAAAACCU 24 7188 myoC-7443 - CUACAGUCCAGAAAGCCU 18 7189 myoC-7444 - CCUACAGUCCAGAAAGCCU 19 7190 myoC-2043 - ACCUACAGUCCAGAAAGCCU 20 2175 myoC-7445 - A ACC U AC AG U CC AG A A AG CC U 21 7191 myoC-7446 - UAACCUACAGUCCAGAAAGCCU 22 7192 myoC-7447 - UUAACCUACAGUCCAGAAAGCCU 23 7193 myoC-7448 - AUUAACCUACAGUCCAGAAAGCCU 24 7194 myoC-7449 - CAGGAAGAAAACAUUCCU 18 7195 myoC-7450 - ACAGG AAG AAAACAU UCCU 19 7196 myoC-2025 - A AC AG G A AG A A AAC A U U CC U 20 2160 myoC-7451 - U AACAGG AAG AAAACAU UCCU 21 7197 myoC-7452 - UUAACAGG AAG AAAACAU UCCU 22 7198 myoC-7453 - U U U AACAGG AAG AAAACAU U CCU 23 7199 myoC-7454 - U U U U AACAGG AAG AAAACAU UCCU 24 7200 myoC-7455 - CACAGUUGUUU UAAAGCU 18 7201 myoC-7456 - ACACAG UUGUUUU A A AG C U 19 7202 myoC-2066 - UACACAGUUGUUUUAAAGCU 20 2197 myoC-7457 - AUACACAGUUGUUU UAAAGCU 21 7203 myoC-7458 - AGAUACACAGUUGUUU UAAAGCU 23 7204 myoC-7459 - AAGAUACACAGUUGUU UUAAAGCU 24 7205 myoC-7460 - UGCU UUUUGUUU UUUCUCU 19 7206 myoC-2039 - UUGCU UUUUGUU UUUUCUCU 20 2172 myoC-7461 - UU UGCUUUU UGUU UUU UCUCU 21 7207 myoC-7462 - AUUUGCUUUU UGU UUUU UCUCU 22 7208 myoC-7463 - CAU UUGCUU UUUGUUU UUUCUCU 23 7209 myoC-7464 - CCAUUUGCUUUUUGU UUUU UCUCU 24 7210 myoC-7465 - AG AU UCAU UCAAGGGCAG U 19 7211 myoC-1127 - CAGAUUCAUUCAAGGGCAGU 20 1427 myoC-7466 - ACAGAUUCAUUCAAGGGCAGU 21 7212 myoC-7467 - AGACAGAU UCAU UCAAGGGCAG U 23 7213 myoC-7468 - AAGACAGAUUCAUUCAAGGGCAGU 24 7214 myoC-4073 - CCAGGCUCCAGAGAAGGU 18 3819 myoC-4074 - ACCAGGCUCCAGAGAAGGU 19 3820 myoC-4075 - CACCAGGCUCCAGAGAAGGU 20 3821 myoC-4076 - CCACCAGG CU CCAG AG AAGG U 21 3822 myoC-4077 - UGCCACCAGGCUCCAGAGAAGGU 23 3823 myoC-7469 - UUAACAU UUUAUUCCAUU 18 7215 myoC-7470 - U U U AACAU UUUAUUCCAUU 19 7216 myoC-2048 - AUUUAACAU UUUAUUCCAU U 20 2179 myoC-7471 - AAUU U AACAU U UUAUUCCAUU 21 7217 myoC-7472 - AAAUUUAACAU UUUAUUCCAUU 22 7218 myoC-7473 - UAAAU U U AACAU UUUAUUCCAUU 23 7219 myoC-7474 - CUAAAUU UAACAUUUUAUUCCAUU 24 7220 myoC-7475 - UCAUUUAGAUUAGUGGUU 18 7221 myoC-7476 - UUCAUUUAGAUUAGUGGUU 19 7222 myoC-7477 - CUUCAUUUAGAUUAGUGGUU 20 7223 myoC-7478 - AGCU UCAUUUAGAUUAGUGGU U 22 7224 myoC-7479 - AGAGCU UCAUU UAGAU UAGUGGUU 24 7225
Table 10G provides exemplary targeting domains for knocking down the MYOC gene selected according to the seven tier parameters. The targeting domains bind within 2484- 903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site) and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 10G
7th Tier
DNA Target Site gRNA Name Targeting Domain
Strand Length Seq ID myoC-7480 + UACAUUAAUAAACCCAAA 18 7226 myoC-7481 + U UACAUUAAUAAACCCAAA 19 7227 myoC-2283 + UU UACAUUAAUAAACCCAAA 20 2362 myoC-7482 + CU U U ACAU U AAU AAACCCAAA 21 7228 myoC-7483 + GCU UUACAUUAAUAAACCCAAA 22 7229 myoC-7484 + UGCU UUACAUUAAUAAACCCAAA 23 7230 myoC-7485 + CUGCU U U ACAU U AAU AAACCCAAA 24 7231 myoC-7486 + AAAGGAUAGUUUU UCAAA 18 7232 myoC-7487 + AAAAGGAUAGU UUUUCAAA 19 7233 myoC-5449 + A A A A AG GAUAGUUUU U C A A A 20 5195 myoC-7488 + A A A A A AG GAUAGUUUU U C A A A 21 7234 myoC-7489 + C A A A A A AG GAUAGU UUUU C A A A 22 7235 myoC-7490 + U C A A A A A AG GAUAGUUUU U C A A A 23 7236 myoC-7491 + U U C A A A A A AG GAUAGU UUUU C A A A 24 7237 myoC-7492 + AU AAAAU AU AG AU UACAA 18 7238 myoC-7493 + U AU AAAAU AU AG AU UACAA 19 7239 myoC-1227 + AU AU AAAAU AU AG AU UACAA 20 1527 myoC-7494 + U AU AU AAAAU AU AG AU UACAA 21 7240 myoC-7495 + AU AUAU AAAAU AU AG AU UACAA 22 7241 myoC-7496 + AAU AUAU AAAAU AU AG AU UACAA 23 7242 myoC-7497 + AAAU AUAU AAAAU AU AG AU UACAA 24 7243 myoC-7498 + AAAAGGAUAGUUUU UCAA 18 7244 myoC-7499 + AAAAAGGAUAGUUUUU C A A 19 7245 myoC-7500 + AAAAAAGG AU AG U U U U U CAA 20 7246 myoC-7501 + CA A A A A AG GAUAGUUU UUCAA 21 7247 myoC-7502 + UCAAAAAAGGAUAGUUU UUCAA 22 7248 myoC-7503 + U U CAA A A A AG GAUAGUUU UU CAA 23 7249 myoC-7504 + GU UCAAAAAAGGAUAGUU UUUCAA 24 7250 myoC-7505 + U UCUUCCUGUUAAAAGAA 18 7251 myoC-7506 + U UUCUUCCUGUUAAAAGAA 19 7252 myoC-2264 + UU UUCUUCCUGU UAAAAGAA 20 2345 myoC-7507 + GU UUUCU UCCUGUUAAAAGAA 21 7253 myoC-7508 + UGUUUUCU UCCUGU UAAAAGAA 22 7254 myoC-7509 + AUGUU UUCUUCCUGUUAAAAGAA 23 7255 myoC-7510 + AAUGUU UUCUUCCUGUUAAAAGAA 24 7256 myoC-7511 + UCUGAACCACUAAUCUAA 18 7257 myoC-7512 + CUCUGAACCACUAAUCUAA 19 7258 myoC-7513 + ACUCUGAACCACUAAUCUAA 20 7259 myoC-7514 + AACUCUGAACCACUAAUCUAA 21 7260 myoC-7515 + GAACUCUGAACCACUAAUCUAA 22 7261 myoC-7516 + AG AACUCUGAACCACUAAUCUAA 23 7262 myoC-7517 + AAG AACUCUGAACCACUAAUCUAA 24 7263 myoC-7518 + GAAUUACUCAGCUUGUAA 18 7264 myoC-7519 + AG AAU U ACUCAGCU UG U AA 19 7265 myoC-1193 + CAGAAUUACUCAGCUUG UAA 20 1493 myoC-7520 + UCAGAAUUACUCAGCUUGUAA 21 7266 myoC-7521 + CUCAGAAU UACUCAGCU UGUAA 22 7267 myoC-7522 + GCUCAGAAU UACUCAGCUUGUAA 23 7268 myoC-7523 + UGCUCAGAAUUACUCAGCUUGUAA 24 7269 myoC-7524 + AUGU UUUCUUCCUGUUAA 18 7270 myoC-7525 + AAUGU UUUCU UCCUGUUAA 19 7271 myoC-2265 + GAAUGUU UUCUUCCUGUUAA 20 2346 myoC-7526 + GGAAUGUU UUCUUCCUGUUAA 21 7272 myoC-7527 + AGGAAUGUU UUCUUCCUGUUAA 22 7273 myoC-7528 + UAGGAAUGU UUUCU UCCUGUUAA 23 7274 myoC-7529 + U UAGGAAUGUUUUCUUCCUGUUAA 24 7275 myoC-7530 + UGUGCUGCUAACUCCACA 18 7276 myoC-7531 + U UGUGCUGCUAACUCCACA 19 7277 myoC-2261 + CUUGUGCUGCUAACUCCACA 20 2343 myoC-7532 + CCUUGUGCUGCUAACUCCACA 21 7278 myoC-7533 + CCCUUGUGCUGCUAACUCCACA 22 7279 myoC-7534 + GCCCUUGUGCUGCUAACUCCACA 23 7280 myoC-7535 + UGCCCU UGUGCUGCUAACUCCACA 24 7281 myoC-7536 + CCCUCACAGAGAAUCACA 18 7282 myoC-7537 + CCCCUCACAGAGAAUCACA 19 7283 myoC-1086 + CCCCCUCACAGAGAAUCACA 20 1386 myoC-7538 + CCCCCCUCACAGAGAAUCACA 21 7284 myoC-7539 + UCCCCCCUCACAGAGAAUCACA 22 7285 myoC-7540 + AU CCCCCCUCACAG AG AAU CACA 23 7286 myoC-7541 + CAUCCCCCCUCACAGAGAAUCACA 24 7287 myoC-7542 + GGACUGUGAAAACUGACA 18 7288 myoC-7543 + UGGACUGUG AAAACUG ACA 19 7289 myoC-5454 + AUGGACUGUGAAAACUGACA 20 5200 myoC-7544 + UAUGGACUGUGAAAACUGACA 21 7290 myoC-7545 + CUAUGGACUGUGAAAACUGACA 22 7291 myoC-7546 + GCU AUGGACUGUGAAAACUGACA 23 7292 myoC-7547 + UGCUAUGGACUGUGAAAACUGACA 24 7293 myoC-7548 + U AU AAAAU AU AG AUU ACA 18 7294 myoC-7549 + AU AU AAAAU AU AG AUU ACA 19 7295 myoC-2295 + U AU AU AAAAU AU AG AUU ACA 20 2371 myoC-7550 + AU AU AU AAAAU AU AG AUU ACA 21 7296 myoC-7551 + AAU AUAU AAAAU AUAGAUU ACA 22 7297 myoC-7552 + AAAU AU AU AAAAU AU AG AUU ACA 23 7298 myoC-7553 + CAAAU AUAU AAAAU AU AG AU U ACA 24 7299 myoC-7554 + C A U A AG CC A AG U CC ACC A 18 7300 myoC-7555 + GCAUAAGCCAAGUCCACCA 19 7301 myoC-2205 + UGCAUAAGCCAAGUCCACCA 20 2300 myoC-7556 + U U G C A U A AG CCA AG U CC ACC A 21 7302 myoC-7557 + CUUGCAUAAGCCAAG UCCACCA 22 7303 myoC-7558 + UCUUGCAUAAGCCAAGUCCACCA 23 7304 myoC-7559 + GUCU UGCAUAAGCCAAGUCCACCA 24 7305 myoC-7560 + U U U ACAU U AAU AAACCCA 18 7306 myoC-7561 + CU UUACAUUAAUAAACCCA 19 7307 myoC-2284 + GCU U U ACAU U AAU AAACCCA 20 2363 myoC-7562 + UGCUUU ACAU U AAU AAACCCA 21 7308 myoC-7563 + CU GCU U U ACAU U AAU AAACCCA 22 7309 myoC-7564 + CCUGCU UU ACAU U AAU AAACCCA 23 7310 myoC-7565 + CCCUGCUU U ACAU U AAU AAACCCA 24 7311 myoC-7566 + AGAGAAGACUAUGGCCCA 18 7312 myoC-7567 + CAGAGAAGACUAUGGCCCA 19 7313 myoC-1091 + GCAGAGAAGACUAUGGCCCA 20 1391 myoC-7568 + AGCAGAGAAGACUAUGGCCCA 21 7314 myoC-7569 + UAGCAGAGAAGACUAUGGCCCA 22 7315 myoC-7570 + AUAGCAGAGAAGACUAUGGCCCA 23 7316 myoC-7571 + UAUAGCAGAGAAGACUAUGGCCCA 24 7317 myoC-7572 + CUUGUGCUGCUAACUCCA 18 7318 myoC-7573 + CCUUGUGCUGCUAACUCCA 19 7319 myoC-2262 + CCCUUGUGCUGCUAACUCCA 20 2344 myoC-7574 + GCCCUUGUGCUGCUAACUCCA 21 7320 myoC-7575 + UGCCCUUGUGCUGCUAACUCCA 22 7321 myoC-7576 + UUGCCCUUGUGCUGCUAACUCCA 23 7322 myoC-7577 + AUUGCCCU UGUGCUGCUAACUCCA 24 7323 myoC-7578 + GCACCCUACCAGGCUCCA 18 7324 myoC-7579 + AGCACCCUACCAGGCUCCA 19 7325 myoC-1218 + CAGCACCCUACCAGGCUCCA 20 1518 myoC-7580 + ACAGCACCCUACCAGGCUCCA 21 7326 myoC-7581 + GACAGCACCCUACCAGGCUCCA 22 7327 myoC-7582 + GGACAGCACCCUACCAGGCUCCA 23 7328 myoC-7583 + AGGACAGCACCCUACCAGGCUCCA 24 7329 myoC-7584 + GCAAGGGUCUU UAUAGCA 18 7330 myoC-7585 + UGCAAGGGUCUU UAUAGCA 19 7331 myoC-2216 + CUGCAAGGGUCUUUAUAGCA 20 2308 myoC-7586 + GCUGCAAGGGUCUUUAUAGCA 21 7332 myoC-7587 + AGCU GCAAGGGUCUU UAUAGCA 22 7333 myoC-7588 + GAGCUGCAAGGGUCU UUAUAGCA 23 7334 myoC-7589 + AGAGCUGCAAGGGUCUUUAUAGCA 24 7335 myoC-7590 + UUUAUGGCUCUAUUCGCA 18 7336 myoC-7591 + GUUUAUGGCUCUAUUCGCA 19 7337 myoC-2288 + AGUUUAUGGCUCUAU UCGCA 20 2366 myoC-7592 + GAGU UUAUGGCUCUAU UCGCA 21 7338 myoC-7593 + UGAGU UUAUGGCUCUAUUCGCA 22 7339 myoC-7594 + UUGAGUUUAUGGCUCUAUUCGCA 23 7340 myoC-7595 + UUUGAGUUUAUGGCUCUAUUCGCA 24 7341 myoC-7596 + U AGG AG AAAGGGCAGGCA 18 7342 myoC-7597 + CU AGG AG AAAGGGCAGGCA 19 7343 myoC-5455 + UCU AGG AG AAAGGGCAGGCA 20 5201 myoC-7598 + CUCU AGG AG AAAGGGCAGGCA 21 7344 myoC-7599 + UCUCU AGG AG AAAGGGCAGGCA 22 7345 myoC-7600 + GUCUCU AGG AG AAAGGGCAGGCA 23 7346 myoC-7601 + AG UCUCU AGG AG AAAGGGCAGGCA 24 7347 myoC-7602 + CCCCCUCACAGAGAAUCA 18 7348 myoC-7603 + CCCCCCUCACAGAGAAUCA 19 7349 myoC-2224 + UCCCCCCUCACAGAGAAUCA 20 2314 myoC-7604 + AUCCCCCCUCACAGAGAAUCA 21 7350 myoC-7605 + CAUCCCCCCUCACAGAGAAUCA 22 7351 myoC-7606 + ACAUCCCCCCUCACAGAGAAUCA 23 7352 myoC-7607 + AACAUCCCCCCUCACAGAGAAUCA 24 7353 myoC-7608 + UGGAGUCUGACGUGAUCA 18 7354 myoC-7609 + CUGGAGUCUGACGUGAUCA 19 7355 myoC-2230 + CCUGGAGUCUGACGUGAUCA 20 2319 myoC-7610 + UCCUGGAGUCUGACGUGAUCA 21 7356 myoC-7611 + GUCCUGGAGUCUGACGUGAUCA 22 7357 myoC-7612 + GGUCCUGGAGUCUGACGUGAUCA 23 7358 myoC-7613 + CGGUCCUGGAGUCUGACGUGAUCA 24 7359 myoC-7614 + UCUCAACAUCCCCCCUCA 18 7360 myoC-7615 + CUCUCAACAUCCCCCCUCA 19 7361 myoC-2226 + CCUCUCAACAUCCCCCCUCA 20 2316 myoC-7616 + CCCUCUCAACAUCCCCCCUCA 21 7362 myoC-7617 + CCCCUCUCAACAUCCCCCCUCA 22 7363 myoC-7618 + UCCCCUCUCAACAUCCCCCCUCA 23 7364 myoC-7619 + U UCCCCUCUCAACAUCCCCCCUCA 24 7365 myoC-7620 + AUGUGGCUGUUGGGU UCA 18 7366 myoC-7621 + AAUGUGGCUGUUGGGU UCA 19 7367 myoC-2234 + AAAUGUGGCUGUUGGGUUCA 20 2322 myoC-7622 + AAAAUGUGGCUGUUGGGU UCA 21 7368 myoC-7623 + GAAAAUGUGGCUGUUGGGUUCA 22 7369 myoC-7624 + GGAAAAUGUGGCUGUUGGGUUCA 23 7370 myoC-7625 + AGGAAAAUGUGGCUGU UGGGUUCA 24 7371 myoC-7626 + AUCACAGGGAAGUGU UCA 18 7372 myoC-7627 + AAUCACAGGGAAGUGU UCA 19 7373 myoC-2221 + G A AU CACAG GGAAG U G U U C A 20 2313 myoC-7628 + AGAAUCACAGGGAAGUGUUCA 21 7374 myoC-7629 + G AG A A U C AC AG G G A AG U G U U C A 22 7375 myoC-7630 + AGAGAAUCACAGGGAAGUGUUCA 23 7376 myoC-7631 + CAGAGAAUCACAGGGAAGUGUUCA 24 7377 myoC-7632 + ACCAAUGGCAGAACCAGA 18 7378 myoC-7633 + AACCAAUGGCAGAACCAGA 19 7379 myoC-2207 + CAACCAAUGGCAGAACCAGA 20 2302 myoC-7634 + CCAACCAAUGGCAGAACCAGA 21 7380 myoC-7635 + GCCAACCAAUGGCAGAACCAGA 22 7381 myoC-7636 + AGCCAACCAAUGGCAGAACCAGA 23 7382 myoC-7637 + C AG CC A ACC A A UGGCAGAACCAGA 24 7383 myoC-7638 + GGCAGACUCACCUCCAGA 18 7384 myoC-7639 + UGGCAGACUCACCUCCAGA 19 7385 myoC-2277 + CUGGCAGACUCACCUCCAGA 20 2356 myoC-7640 + CCUGGCAGACUCACCUCCAGA 21 7386 myoC-7641 + CCCUGGCAGACUCACCUCCAGA 22 7387 myoC-7642 + GCCCUGGCAGACUCACCUCCAGA 23 7388 myoC-7643 + UGCCCUGGCAGACUCACCUCCAGA 24 7389 myoC-7644 + UGUGCAGUCUCUAGGAGA 18 7390 myoC-7645 + CUGUGCAGUCUCUAGGAGA 19 7391 myoC-7646 + GCUGUGCAGUCUCUAGGAGA 20 7392 myoC-7647 + AGCUGUGCAGUCUCUAGGAGA 21 7393 myoC-7648 + UAGCUGUGCAGUCUCUAGGAGA 22 7394 myoC-7649 + CUAGCUGUGCAGUCUCUAGGAGA 23 7395 myoC-7650 + GCUAGCUGUGCAGUCUCUAGGAGA 24 7396 myoC-7651 + AAGACUAUGGCCCAGGGA 18 7397 myoC-7652 + GAAGACUAUGGCCCAGGGA 19 7398 myoC-1092 + AG AAGACUAUGGCCCAGGGA 20 1392 myoC-7653 + GAG AAGACUAUGGCCCAGGGA 21 7399 myoC-7654 + AG AG AAGACUAUGGCCCAGGGA 22 7400 myoC-7655 + CAG AG AAGACUAUGGCCCAGGGA 23 7401 myoC-7656 + GCAG AG AAGACUAUGGCCCAGGGA 24 7402 myoC-7657 + AUUGUCUAUGCUUAGGGA 18 7403 myoC-7658 + CAU UGUCUAUGCUUAGGGA 19 7404 myoC-1075 + CCAUUGUCUAUGCUUAGGGA 20 1375 myoC-7659 + GCCAU UGUCUAUGCUUAGGGA 21 7405 myoC-7660 + UGCCAUUGUCUAUGCU UAGGGA 22 7406 myoC-7661 + AUGCCAUUGUCUAUGCU UAGGGA 23 7407 myoC-7662 + AAUGCCAUUGUCUAUGCUUAGGGA 24 7408 myoC-5871 + GU UGCCCAGAAGACAUGA 18 5617 myoC-5872 + AGUUGCCCAGAAGACAUGA 19 5618 myoC-2201 + UAGUUGCCCAGAAGACAUGA 20 2296 myoC-5873 + GU AGU UGCCCAGAAGACAUGA 21 5619 myoC-5874 + AG UAGU UGCCCAGAAGACAUGA 22 5620 myoC-5875 + G AG U AG U U GCCCAG AAG ACAUG A 23 5621 myoC-5876 + UGAGUAGU UGCCCAGAAGACAUGA 24 5622 myoC-7663 + GUGAUCAGUGAGGACUGA 18 7409 myoC-7664 + CGUGAUCAGUGAGGACUGA 19 7410 myoC-1083 + ACGUGAUCAGUGAGGACUGA 20 1383 myoC-7665 + GACGUGAUCAGUGAGGACUGA 21 7411 myoC-7666 + UGACGUGAUCAGUGAGGACUGA 22 7412 myoC-7667 + CUG ACGUGAUCAGUGAGGACUGA 23 7413 myoC-7668 + UCUGACGUGAUCAGUGAGGACUGA 24 7414 myoC-7669 + GAAAAAGAGUUCCUAAUA 18 7415 myoC-7670 + AGAAAAAGAGU UCCUAAUA 19 7416 myoC-1192 + GAGAAAAAGAGU UCCUAAUA 20 1492 myoC-7671 + AG AGAAAAAGAGUUCCUAAUA 21 7417 myoC-7672 + CAG AGAAAAAGAGUUCCUAAUA 22 7418 myoC-7673 + ACAG AGAAAAAGAGU UCCUAAUA 23 7419 myoC-7674 + CACAG AGAAAAAGAGUUCCUAAUA 24 7420 myoC-7675 + C A A AG G A A AC A A A U G A U A 18 7421 myoC-7676 + ACAAAGGAAACAAAUGAUA 19 7422 myoC-2293 + U AC A AAG G A A AC A A A U G A U A 20 2370 myoC-7677 + U U AC A A AG G A A AC A A A U G A U A 21 7423 myoC-7678 + AUU ACAAAGGAAACAAAUGAUA 22 7424 myoC-7679 + GAUU ACAAAGGAAACAAAUGAUA 23 7425 myoC-7680 + AG AUU ACAAAGGAAACAAAUGAUA 24 7426 myoC-7681 + CCAGGGAGAGCAUUCCUA 18 7427 myoC-7682 + UCCAGGGAGAGCAUUCCUA 19 7428 myoC-2307 + CUCCAGGGAGAGCAUUCCUA 20 2378 myoC-7683 + GCUCCAGGGAGAGCAUUCCUA 21 7429 myoC-7684 + GGCUCCAGGGAGAGCAUUCCUA 22 7430 myoC-7685 + AGGCUCCAGGGAGAGCAUUCCUA 23 7431 myoC-7686 + CAGGCUCCAGGGAGAGCAUUCCUA 24 7432 myoC-7687 + AGAAUUACUCAGCUUGUA 18 7433 myoC-7688 + CAGAAUUACUCAGCU UGUA 19 7434 myoC-2255 + UCAGAAU UACUCAGCUUGUA 20 2338 myoC-7689 + CUCAGAAUUACUCAGCU UGUA 21 7435 myoC-7690 + GCUCAGAAUUACUCAGCUUGUA 22 7436 myoC-7691 + UGCUCAGAAUUACUCAGCUUGUA 23 7437 myoC-7692 + UUGCUCAGAAUUACUCAGCUUGUA 24 7438 myoC-7693 + UGCCAUUGUCUAUGCUUA 18 7439 myoC-7694 + AUGCCAUUGUCUAUGCUUA 19 7440 myoC-1074 + AAUGCCAUUGUCUAUGCUUA 20 1374 myoC-7695 + AAAUGCCAUUGUCUAUGCUUA 21 7441 myoC-7696 + CAAAUGCCAUUGUCUAUGCU UA 22 7442 myoC-7697 + GCAAAUGCCAUUGUCUAUGCUUA 23 7443 myoC-7698 + GGCAAAUGCCAUUGUCUAUGCUUA 24 7444 myoC-7699 + GGGAAGUGU UCACAGAAC 18 7445 myoC-7700 + AGGGAAGUGUUCACAGAAC 19 7446 myoC-2220 + CAGGGAAGUGUUCACAGAAC 20 2312 myoC-7701 + ACAGGGAAGUGU UCACAGAAC 21 7447 myoC-7702 + C AC AG G G A AG U G U U C AC AG A AC 22 7448 myoC-7703 + UCACAGGGAAGUGUUCACAGAAC 23 7449 myoC-7704 + AUCACAGGGAAGUGU UCACAGAAC 24 7450 myoC-7705 + GCCAACCAAUGGCAGAAC 18 7451 myoC-7706 + AGCCAACCAAUGGCAGAAC 19 7452 myoC-2208 + CAGCCAACCAAUGGCAGAAC 20 2303 myoC-7707 + ACAGCCAACCAAUGGCAGAAC 21 7453 myoC-7708 + CACAG CCAACCAAU G G CAG AAC 22 7454 myoC-7709 + G CAC AG CC A ACC A A U G G C AG A AC 23 7455 myoC-7710 + CG CACAG CCA ACC A A U G G C AG A AC 24 7456 myoC-7711 + CUGCAGUUAAGCCUGAAC 18 7457 myoC-7712 + UCUGCAGU UAAGCCUGAAC 19 7458 myoC-2273 + U UCUGCAGU UAAGCCUGAAC 20 2353 myoC-7713 + GUUCUGCAGU UAAGCCUGAAC 21 7459 myoC-7714 + GGUUCUGCAG UUAAGCCUGAAC 22 7460 myoC-7715 + UGGUUCUGCAGUUAAGCCUGAAC 23 7461 myoC-7716 + UUGGUUCUGCAGUUAAGCCUGAAC 24 7462 myoC-7717 + G A AG U G U U C AC AG AACAC 18 7463 myoC-7718 + GGAAGUGU UCACAGAACAC 19 7464 myoC-2219 + GGGAAGUG UUCACAG AACAC 20 2311 myoC-7719 + AG G G A AG U G U U C AC AG AACAC 21 7465 myoC-7720 + CAGGGAAG U G U UCACAG AACAC 22 7466 myoC-7721 + ACAGGGAAGUGUUCACAG AACAC 23 7467 myoC-7722 + C ACAG G G A AG U G U U C AC AG A AC AC 24 7468 myoC-7723 + G A AG U A AC U U U A AG CC AC 18 7469 myoC-7724 + AG AAG U AACU U U AAGCCAC 19 7470 myoC-2281 + C AG A AG U A AC U U U A AG CC AC 20 2360 myoC-7725 + UCAG AAG U AACU U U AAGCCAC 21 7471 myoC-7726 + GUCAGAAGU AACU UU AAGCCAC 22 7472 myoC-7727 + UGUCAGAAGUAACU UUAAGCCAC 23 7473 myoC-7728 + CUGUCAGAAGUAACUUUAAGCCAC 24 7474 myoC-7729 + ACUGACAUGGAGGGGCAC 18 7475 myoC-7730 + AACUGACAUGGAGGGGCAC 19 7476 myoC-7731 + AAACUGACAUGGAGGGGCAC 20 7477 myoC-7732 + AAAACUGACAUGGAGGGGCAC 21 7478 myoC-7733 + GAAAACUGACAUGGAGGGGCAC 22 7479 myoC-7734 + UGAAAACUGACAUGGAGGGGCAC 23 7480 myoC-7735 + GUGAAAACUGACAUGGAGGGGCAC 24 7481 myoC-7736 + CCCCU CACAG AG AAU CAC 18 7482 myoC-7737 + CCCCCUCACAGAGAAUCAC 19 7483 myoC-1085 + CCCCCCUCACAGAGAAUCAC 20 1385 myoC-7738 + UCCCCCCUCACAGAGAAUCAC 21 7484 myoC-7739 + AUCCCCCCUCACAGAGAAUCAC 22 7485 myoC-7740 + CAUCCCCCCUCACAGAGAAUCAC 23 7486 myoC-7741 + ACAU CCCCCCUCACAG AG AAU CAC 24 7487 myoC-7742 + CCUAGAACCCAGGAUCAC 18 7488 myoC-7743 + UCCUAGAACCCAGGAUCAC 19 7489 myoC-2249 + CUCCUAGAACCCAGGAUCAC 20 2333 myoC-7744 + CCUCCUAGAACCCAGGAUCAC 21 7490 myoC-7745 + GCCUCCUAGAACCCAGGAUCAC 22 7491 myoC-7746 + UGCCUCCUAGAACCCAGGAUCAC 23 7492 myoC-7747 + CUGCCUCCUAGAACCCAGGAUCAC 24 7493 myoC-5955 + AGUAGUUGCCCAGAAGAC 18 5701 myoC-5956 + GAGUAGU UGCCCAGAAGAC 19 5702 myoC-2202 + UGAGUAGU UGCCCAGAAGAC 20 2297 myoC-7748 + CUG AGUAGUUGCCCAGAAGAC 21 7494 myoC-7749 + GCUG AGUAGUUGCCCAGAAGAC 22 7495 myoC-7750 + GGCUG AGUAGUUGCCCAGAAGAC 23 7496 myoC-7751 + GGGCUGAGUAGU UGCCCAGAAGAC 24 7497 myoC-7752 + UGGACUGUGAAAACUGAC 18 7498 myoC-7753 + AUGGACUGUGAAAACUGAC 19 7499 myoC-7754 + UAUGGACUGUGAAAACUGAC 20 7500 myoC-7755 + CU AUGGACUGUGAAAACUGAC 21 7501 myoC-7756 + GCU AUGGACUGUGAAAACUGAC 22 7502 myoC-7757 + UGCU AUGGACUGUGAAAACUGAC 23 7503 myoC-7758 + U UGCUAUGGACUGUGAAAACUGAC 24 7504 myoC-7759 + CUAAAUUACUAGUAAUAC 18 7505 myoC-7760 + GCUAAAU UACUAGUAAUAC 19 7506 myoC-7761 + AGCUAAAUUACUAGUAAUAC 20 7507 myoC-7762 + GAGCUAAAUUACUAGUAAUAC 21 7508 myoC-7763 + GGAGCUAAAUUACUAGUAAUAC 22 7509 myoC-7764 + AGGAGCUAAAU UACUAGUAAUAC 23 7510 myoC-7765 + CAGGAGCUAAAUUACUAGUAAUAC 24 7511 myoC-7766 + CAGAGAAGACUAUGGCCC 18 7512 myoC-7767 + GCAGAGAAGACUAUGGCCC 19 7513 myoC-1090 + AGCAGAGAAGACUAUGGCCC 20 1390 myoC-7768 + UAGCAGAGAAGACUAUGGCCC 21 7514 myoC-7769 + AU AGCAGAGAAGACUAUGGCCC 22 7515 myoC-7770 + UAU AGCAGAGAAGACUAUGGCCC 23 7516 myoC-7771 + U UAU AGCAGAGAAGACUAUGGCCC 24 7517 myoC-7772 + CAGGUCUCCCGACU UCCC 18 7518 myoC-7773 + UCAGGUCUCCCGACU UCCC 19 7519 myoC-2252 + AUCAGGUCUCCCGACUUCCC 20 2336 myoC-7774 + AAUCAGGUCUCCCGACUUCCC 21 7520 myoC-7775 + AAAUCAGGUCUCCCGACUUCCC 22 7521 myoC-7776 + GAAAUCAGGUCUCCCGACU UCCC 23 7522 myoC-7777 + AGAAAUCAGGUCUCCCGACUUCCC 24 7523 myoC-7778 + AGGGCAGGCAGGGAGGCC 18 7524 myoC-7779 + AAGGGCAGGCAGGGAGGCC 19 7525 myoC-5467 + AAAGGGCAGGCAGGGAGGCC 20 5213 myoC-7780 + GAAAGGGCAGGCAGGGAGGCC 21 7526 myoC-7781 + AG AAAGGGCAGGCAGGGAGGCC 22 7527 myoC-7782 + GAG AAAGGGCAGGCAGGGAGGCC 23 7528 myoC-7783 + GGAGAAAGGGCAGGCAGGGAGGCC 24 7529 myoC-7784 + GCAGAGAAGACUAUGGCC 18 7530 myoC-7785 + AGCAGAGAAGACUAUGGCC 19 7531 myoC-2215 + UAGCAGAGAAGACUAUGGCC 20 2307 myoC-7786 + AU AGCAGAGAAGACUAUGGCC 21 7532 myoC-7787 + UAU AGCAGAGAAGACUAUGGCC 22 7533 myoC-7788 + U UAU AGCAGAGAAGACUAUGGCC 23 7534 myoC-7789 + UUUAUAGCAGAGAAGACUAUGGCC 24 7535 myoC-7790 + UCUGUGUGUGUGCAUGCC 18 7536 myoC-7791 + CUCUGUGUGUGUGCAUGCC 19 7537 myoC-2302 + ACUCUGUGUG UGUGCAUGCC 20 2375 myoC-7792 + UACUCUGUGUGUGUGCAUGCC 21 7538 myoC-7793 + UUACUCUGUGUGUGUGCAUGCC 22 7539 myoC-7794 + CUUACUCUGUGUGUGUGCAUGCC 23 7540 myoC-7795 + UCU UACUCUGUGUGUGUGCAUGCC 24 7541 myoC-7796 + CAGGGCUGAGUAGUUGCC 18 7542 myoC-7797 + ACAGGGCUGAGUAGUUGCC 19 7543 myoC-2203 + CACAGGGCUGAGUAGU UGCC 20 2298 myoC-7798 + CCACAGGGCUGAGUAGUUGCC 21 7544 myoC-7799 + ACCACAGGGCUGAGUAGUUGCC 22 7545 myoC-7800 + CACCACAGGGCUGAGUAGUUGCC 23 7546 myoC-7801 + CCACCACAGGGCUGAGUAGUUGCC 24 7547 myoC-7802 + CAAUAUAGCCCUGCCUCC 18 7548 myoC-7803 + ACAAUAUAGCCCUGCCUCC 19 7549 myoC-2251 + CACAAUAUAGCCCUGCCUCC 20 2335 myoC-7804 + CCACAAUAUAGCCCUGCCUCC 21 7550 myoC-7805 + CCCACAAUAUAGCCCUGCCUCC 22 7551 myoC-7806 + CCCCACAAUAUAGCCCUGCCUCC 23 7552 myoC-7807 + CCCCCACAAUAUAGCCCUGCCUCC 24 7553 myoC-7808 + AGCACCCUACCAGGCUCC 18 7554 myoC-7809 + CAGCACCCUACCAGGCUCC 19 7555 myoC-1217 + ACAGCACCCUACCAGGCUCC 20 1517 myoC-7810 + GACAGCACCCUACCAGGCUCC 21 7556 myoC-7811 + GGACAGCACCCUACCAGGCUCC 22 7557 myoC-7812 + AGGACAGCACCCUACCAGGCUCC 23 7558 myoC-7813 + AAGGACAGCACCCUACCAGGCUCC 24 7559 myoC-7814 + UUGGUUCUGCAGUUAAGC 18 7560 myoC-7815 + AU UGGUUCUGCAGUUAAGC 19 7561 myoC-2274 + GAUUGGUUCUGCAGU UAAGC 20 2354 myoC-7816 + UGAUUGGUUCUGCAGU UAAGC 21 7562 myoC-7817 + UUGAU UGGUUCUGCAGUUAAGC 22 7563 myoC-7818 + UUUGAUUGGUUCUGCAGUUAAGC 23 7564 myoC-7819 + AU UUGAUUGGUUCUGCAGUUAAGC 24 7565 myoC-4259 + GGAGCCUGGUGGCACAGC 18 4005 myoC-4260 + UGGAGCCUGGUGGCACAGC 19 4006 myoC-1701 + CUGGAGCCUGGUGGCACAGC 20 1953 myoC-4261 + UCUGGAGCCUGGUGGCACAGC 21 4007 myoC-4262 + CUCUGGAGCCUGGUGGCACAGC 22 4008 myoC-4263 + UCUCUGGAGCCUGGUGGCACAGC 23 4009 myoC-4264 + UUCUCUGGAGCCUGGUGGCACAGC 24 4010 myoC-7820 + U U A A A A AC A AG AU CC AG C 18 7566 myoC-7821 + G U U A A A A AC A AG AU CC AG C 19 7567 myoC-1228 + U G U U A A A A AC A AG A U CC AG C 20 1528 myoC-7822 + AUGU UAAAAACAAGAUCCAGC 21 7568 myoC-7823 + UAUGU UAAAAACAAGAUCCAGC 22 7569 myoC-7824 + A U A U G U U A A A A AC A AG A U CC AG C 23 7570 myoC-7825 + AAUAUGUUAAAAACAAGAUCCAGC 24 7571 myoC-7826 + CUAGGAGAAAGGGCAGGC 18 7572 myoC-7827 + UCUAGGAGAAAGGGCAGGC 19 7573 myoC-5471 + CUCUAGGAGAAAGGGCAGGC 20 5217 myoC-7828 + UCUCUAGGAGAAAGGGCAGGC 21 7574 myoC-7829 + GUCUCUAGGAGAAAGGGCAGGC 22 7575 myoC-7830 + AGUCUCUAGGAGAAAGGGCAGGC 23 7576 myoC-7831 + CAGUCUCUAGGAGAAAGGGCAGGC 24 7577 myoC-7832 + AAGGGCAGGCAGGGAGGC 18 7578 myoC-7833 + AAAGGGCAGGCAGGGAGGC 19 7579 myoC-7834 + GAAAGGGCAGGCAGGGAGGC 20 7580 myoC-7835 + AG AAAGGGCAGGCAGGGAGGC 21 7581 myoC-7836 + GAG AAAGGGCAGGCAGGGAGGC 22 7582 myoC-7837 + GGAGAAAGGGCAGGCAGGGAGGC 23 7583 myoC-7838 + AGGAGAAAGGGCAGGCAGGGAGGC 24 7584 myoC-7839 + CAGUCACUGCUGAGCUGC 18 7585 myoC-7840 + GCAGUCACUGCUGAGCUGC 19 7586 myoC-2245 + AGCAGUCACUGCUGAGCUGC 20 2329 myoC-7841 + CAGCAGUCACUGCUGAGCUGC 21 7587 myoC-7842 + UCAGCAGUCACUGCUGAGCUGC 22 7588 myoC-7843 + GUCAGCAGUCACUGCUGAGCUGC 23 7589 myoC-7844 + UGUCAGCAGUCACUGCUGAGCUGC 24 7590 myoC-7845 + AACCUCAUUGGUGAAAUC 18 7591 myoC-7846 + GAACCUCAUUGGUGAAAUC 19 7592 myoC-1224 + AG AACCUCAUUGGUGAAAUC 20 1524 myoC-7847 + AAGAACCUCAUUGGUGAAAUC 21 7593 myoC-7848 + CAAGAACCUCAUUGGUGAAAUC 22 7594 myoC-7849 + CCAAGAACCUCAU UGGUGAAAUC 23 7595 myoC-7850 + GCCAAGAACCUCAU UGGUGAAAUC 24 7596 myoC-3315 + UCGCUUCUUCUCU UCCUC 18 3061 myoC-3316 + GUCGCU UCUUCUCUUCCUC 19 3062 myoC-1696 + AGUCGCUUCUUCUCUUCCUC 20 1950 myoC-3317 + UAGUCGCUUCUUCUCUUCCUC 21 3063 myoC-3318 + UUAGUCGCU UCUUCUCUUCCUC 22 3064 myoC-3319 + CUUAGUCGCU UCUUCUCUUCCUC 23 3065 myoC-3320 + CCUUAGUCGCUUCU UCUCUUCCUC 24 3066 myoC-7851 + CAGCACCCUACCAGGCUC 18 7597 myoC-7852 + ACAGCACCCUACCAGGCUC 19 7598 myoC-2311 + GACAGCACCCUACCAGGCUC 20 2380 myoC-7853 + GGACAGCACCCUACCAGGCUC 21 7599 myoC-7854 + AGGACAGCACCCUACCAGGCUC 22 7600 myoC-7855 + AAGG ACAGCACCCUACCAGGCUC 23 7601 myoC-7856 + CAAGGACAGCACCCUACCAGGCUC 24 7602 myoC-7857 + AAUCUAAAUGAAGCUCUC 18 7603 myoC-7858 + UAAUCUAAAUGAAGCUCUC 19 7604 myoC-5474 + CU AAUCUAAAUGAAGCUCUC 20 5220 myoC-7859 + ACUAAUCUAAAUGAAGCUCUC 21 7605 myoC-7860 + CACUAAUCUAAAUGAAGCUCUC 22 7606 myoC-7861 + CCACUAAUCUAAAUGAAGCUCUC 23 7607 myoC-7862 + ACCACUAAUCUAAAUGAAGCUCUC 24 7608 myoC-7863 + UGCUAGCUGUGCAGUCUC 18 7609 myoC-7864 + GUGCUAGCUGUGCAGUCUC 19 7610 myoC-7865 + UGUGCUAGCUGUGCAGUCUC 20 7611 myoC-7866 + UUGUGCUAGCUGUGCAGUCUC 21 7612 myoC-7867 + CUUGUGCUAGCUGUGCAGUCUC 22 7613 myoC-7868 + UCUUGUGCUAGCUGUGCAGUCUC 23 7614 myoC-7869 + GUCUUGUGCUAGCUGUGCAGUCUC 24 7615 myoC-4331 + CUGCAUUCU UACCUUCUC 18 4077 myoC-4332 + UCUGCAUUCU UACCU UCUC 19 4078 myoC-3184 + CUCUGCAU UCUUACCUUCUC 20 2930 myoC-4333 + ACUCUGCAUUCUUACCU UCUC 21 4079 myoC-4334 + CACUCUGCAU UCUUACCUUCUC 22 4080 myoC-4335 + CCACUCUGCAUUCUUACCUUCUC 23 4081 myoC-4336 + CCCACUCUGCAUUCUUACCUUCUC 24 4082 myoC-7870 + GCAUUGUGGCUCUCGGUC 18 7616 myoC-7871 + AGCAUUGUGGCUCUCGGUC 19 7617 myoC-2232 + AAGCAUUGUGGCUCUCGGUC 20 2320 myoC-7872 + GAAGCAUUGUGGCUCUCGGUC 21 7618 myoC-7873 + UGAAGCAU UGUGGCUCUCGGUC 22 7619 myoC-7874 + CUGAAGCAUUGUGGCUCUCGGUC 23 7620 myoC-7875 + CCUGAAGCAUUGUGGCUCUCGGUC 24 7621 myoC-4343 + CGAGCAGUGUCUCGGGUC 18 4089 myoC-4344 + CCGAGCAGUGUCUCGGGUC 19 4090 myoC-203 + CCCGAGCAGUGUCUCGGGUC 20 589 myoC-4345 + GCCCGAGCAGUGUCUCGGGUC 21 4091 myoC-4346 + AGCCCGAGCAGUGUCUCGGGUC 22 4092 myoC-4347 + CAGCCCGAGCAGUGUCUCGGGUC 23 4093 myoC-4348 + ACAGCCCGAGCAGUGUCUCGGGUC 24 4094 myoC-7876 + UGGGU UCAUUGAGCUU UC 18 7622 myoC-7877 + UUGGGU UCAUUGAGCU UUC 19 7623 myoC-2233 + GUUGGGUUCAUUGAGCU UUC 20 2321 myoC-7878 + UGUUGGGUUCAUUGAGCU UUC 21 7624 myoC-7879 + CUGU UGGGUUCAUUGAGCUUUC 22 7625 myoC-7880 + GCUGUUGGGU UCAU UGAGCU UUC 23 7626 myoC-7881 + GGCUGUUGGGUUCAUUGAGCUUUC 24 7627 myoC-7882 + GACUAUGGCCCAGGGAAG 18 7628 myoC-7883 + AGACUAUGGCCCAGGGAAG 19 7629 myoC-2210 + AAGACUAUGGCCCAGGGAAG 20 2305 myoC-7884 + GAAGACUAUGGCCCAGGGAAG 21 7630 myoC-7885 + AG AAGACUAUGGCCCAGGGAAG 22 7631 myoC-7886 + GAG AAGACUAUGGCCCAGGGAAG 23 7632 myoC-7887 + AGAGAAGACUAUGGCCCAGGGAAG 24 7633 myoC-7888 + AAAAGAGUUCCUAAUAAG 18 7634 myoC-7889 + AAAAAGAGUUCCUAAUAAG 19 7635 myoC-2257 + GAAAAAGAGU UCCUAAUAAG 20 2340 myoC-7890 + AGAAAAAGAGUUCCUAAUAAG 21 7636 myoC-7891 + GAGAAAAAGAGUUCCUAAUAAG 22 7637 myoC-7892 + AGAGAAAAAGAGU UCCUAAUAAG 23 7638 myoC-7893 + C AG AG A A A A AG AGUUCCUAAUAAG 24 7639 myoC-7894 + G U U A A A A AC A AG A U CC AG 18 7640 myoC-7895 + UGUUAAAAACAAGAUCCAG 19 7641 myoC-2292 + A U G U U A A A A AC A AG AU CC AG 20 2369 myoC-7896 + UAUGU UAAAAACAAGAUCCAG 21 7642 myoC-7897 + A U A U G U U A A A A AC A AG A U CC AG 22 7643 myoC-7898 + AAUAUGU UAAAAACAAGAUCCAG 23 7644 myoC-7899 + UAAUAUGUUAAAAACAAGAUCCAG 24 7645 myoC-7900 + GCAGACUCACCUCCAGAG 18 7646 myoC-7901 + GGCAGACUCACCUCCAGAG 19 7647 myoC-1181 + UGGCAGACUCACCUCCAGAG 20 1481 myoC-7902 + CUGGCAGACUCACCUCCAGAG 21 7648 myoC-7903 + CC U G G C AG AC U C ACC U CC AG AG 22 7649 myoC-7904 + CCCUGGCAGACUCACCUCCAGAG 23 7650 myoC-7905 + GCCCUGGCAGACUCACCUCCAGAG 24 7651 myoC-7906 + CUGCAAGGGUCUUUAUAG 18 7652 myoC-7907 + GCUGCAAGGGUCUUUAUAG 19 7653 myoC-2217 + AGCUGCAAGGGUCUUUAUAG 20 2309 myoC-7908 + GAGCUGCAAGGGUCUU UAUAG 21 7654 myoC-7909 + AG AGCUGCAAGGGUCU UUAUAG 22 7655 myoC-7910 + GAG AGCUGCAAGGGUCUUUAUAG 23 7656 myoC-7911 + CGAGAGCUGCAAGGGUCUUUAUAG 24 7657 myoC-7912 + UAGCUGUGCAGUCUCUAG 18 7658 myoC-7913 + CUAGCUGUGCAGUCUCUAG 19 7659 myoC-7914 + GCUAGCUGUGCAGUCUCUAG 20 7660 myoC-7915 + UGCUAGCUGUGCAGUCUCUAG 21 7661 myoC-7916 + GUGCUAGCUGUGCAGUCUCUAG 22 7662 myoC-7917 + UGUGCUAGCUGUGCAGUCUCUAG 23 7663 myoC-7918 + UUGUGCUAGCUGUGCAGUCUCUAG 24 7664 myoC-7919 + A U C AG A U AG U A A AC AU CG 18 7665 myoC-7920 + AAUCAGAUAGUAAACAUCG 19 7666 myoC-2269 + GAAUCAGAUAGUAAACAUCG 20 2349 myoC-7921 + UG AAUCAGAUAGUAAACAUCG 21 7667 myoC-7922 + CUG AAUCAGAUAGUAAACAUCG 22 7668 myoC-7923 + UCUG AAUCAGAUAGUAAACAUCG 23 7669 myoC-7924 + U UCUGAAUCAGAUAGUAAACAUCG 24 7670 myoC-7925 + ACCCUACCAGGCUCCAGG 18 7671 myoC-7926 + CACCCUACCAGGCUCCAGG 19 7672 myoC-2308 + GCACCCUACCAGGCUCCAGG 20 2379 myoC-7927 + AGCACCCUACCAGGCUCCAGG 21 7673 myoC-7928 + CAGCACCCUACCAGGCUCCAGG 22 7674 myoC-7929 + ACAGCACCCUACCAGGCUCCAGG 23 7675 myoC-7930 + GACAGCACCCUACCAGGCUCCAGG 24 7676 myoC-7931 + UCUAGGAGAAAGGGCAGG 18 7677 myoC-7932 + CUCUAGGAGAAAGGGCAGG 19 7678 myoC-7933 + UCUCUAGGAGAAAGGGCAGG 20 7679 myoC-7934 + GUCUCUAGGAGAAAGGGCAGG 21 7680 myoC-7935 + AG UCUCUAGGAGAAAGGGCAGG 22 7681 myoC-7936 + CAGUCUCUAGGAGAAAGGGCAGG 23 7682 myoC-7937 + GCAGUCUCUAGGAGAAAGGGCAGG 24 7683 myoC-7938 + CGUGGGGUGCUGGUCAGG 18 7684 myoC-7939 + GCGUGGGGUGCUGGUCAGG 19 7685 myoC-2242 + UGCG UGGGGUGCUGGUCAGG 20 2327 myoC-7940 + CUGCGUGGGGUGCUGGUCAGG 21 7686 myoC-7941 + GCUGCGUGGGGUGCUGGUCAGG 22 7687 myoC-7942 + AGCUGCGUGGGGUGCUGGUCAGG 23 7688 myoC-7943 + GAGCUGCGUGGGGUGCUGGUCAGG 24 7689 myoC-7944 + GAAGACUAUGGCCCAGGG 18 7690 myoC-7945 + AGAAGACUAUGGCCCAGGG 19 7691 myoC-2212 + GAGAAGACUAUGGCCCAGGG 20 2306 myoC-7946 + AG AGAAGACUAUGGCCCAGGG 21 7692 myoC-7947 + CAG AGAAGACUAUGGCCCAGGG 22 7693 myoC-7948 + GCAG AGAAGACUAUGGCCCAGGG 23 7694 myoC-7949 + AGCAG AGAAGACUAUGGCCCAGGG 24 7695 myoC-7950 + CAU UGUCUAUGCUUAGGG 18 7696 myoC-7951 + CCAUUGUCUAUGCUUAGGG 19 7697 myoC-2237 + GCCAUUGUCUAUGCUUAGGG 20 2324 myoC-7952 + UGCCAUUGUCUAUGCU UAGGG 21 7698 myoC-7953 + AUGCCAUUGUCUAUGCUUAGGG 22 7699 myoC-7954 + AAUGCCAUUGUCUAUGCUUAGGG 23 7700 myoC-7955 + AAAUGCCAUUGUCUAUGCUUAGGG 24 7701 myoC-7956 + CGCACAGCCAACCAAUGG 18 7702 myoC-7957 + UCGCACAGCCAACCAAUGG 19 7703 myoC-2209 + G U CG CACAG CCA ACCAA U G G 20 2304 myoC-7958 + G G U CG C AC AG CCA ACCAA U G G 21 7704 myoC-7959 + CGG UCGCACAGCCAACCAAUGG 22 7705 myoC-7960 + ACG G U CG CACAG CCA ACCAA U G G 23 7706 myoC-7961 + C ACG G U CG CACAG CCA ACCAA U G G 24 7707 myoC-7962 + CUGUGAAAACUGACAUGG 18 7708 myoC-7963 + ACUGUGAAAACUGACAUGG 19 7709 myoC-5479 + GACUGUGAAAACUGACAUGG 20 5225 myoC-7964 + GG ACUGUGAAAACUGACAUGG 21 7710 myoC-7965 + UGGACUGUGAAAACUGACAUGG 22 7711 myoC-7966 + AUGGACUGUGAAAACUGACAUGG 23 7712 myoC-7967 + UAUGGACUGUGAAAACUGACAUGG 24 7713 myoC-7968 + ACAACUGUGUAUCU UUGG 18 7714 myoC-7969 + AACAACUGUGUAUCUUUGG 19 7715 myoC-2303 + AAACAACUGUGUAUCU UUGG 20 2376 myoC-7970 + AAAACAACUGUGUAUCU UUGG 21 7716 myoC-7971 + UAAAACAACUGUGUAUCUUUGG 22 7717 myoC-7972 + UUAAAACAACUGUGUAUCUUUGG 23 7718 myoC-7973 + UUUAAAACAACUGUGUAUCUUUGG 24 7719 myoC-7974 + ACUGUGAAAACUGACAUG 18 7720 myoC-7975 + GACUGUGAAAACUGACAUG 19 7721 myoC-7976 + GGACUGUGAAAACUGACAUG 20 7722 myoC-7977 + UGG ACUGUGAAAACUGACAUG 21 7723 myoC-7978 + AUGGACUGUGAAAACUGACAUG 22 7724 myoC-7979 + UAUGG ACUGUGAAAACUGACAUG 23 7725 myoC-7980 + CUAUGGACUGUGAAAACUGACAUG 24 7726 myoC-7981 + UGCUGUCAGCAGUCACUG 18 7727 myoC-7982 + GUGCUGUCAGCAGUCACUG 19 7728 myoC-2246 + CGUGCUGUCAGCAGUCACUG 20 2330 myoC-7983 + CCGUGCUGUCAGCAGUCACUG 21 7729 myoC-7984 + UCCGUGCUGUCAGCAGUCACUG 22 7730 myoC-7985 + CUCCGUGCUGUCAGCAGUCACUG 23 7731 myoC-7986 + ACUCCGUGCUGUCAGCAGUCACUG 24 7732 myoC-7987 + CGUGAUCAGUGAGGACUG 18 7733 myoC-7988 + ACGUGAUCAGUGAGGACUG 19 7734 myoC-2228 + GACGUGAUCAGUGAGGACUG 20 2317 myoC-7989 + UGACGUGAUCAGUGAGGACUG 21 7735 myoC-7990 + CUG ACGUGAUCAGUGAGGACUG 22 7736 myoC-7991 + UCUG ACGUGAUCAGUGAGGACUG 23 7737 myoC-7992 + GUCUGACGUGAUCAGUGAGGACUG 24 7738 myoC-7993 + UACGAGCCAUAUCACCUG 18 7739 myoC-7994 + CUACGAGCCAUAUCACCUG 19 7740 myoC-7995 + ACUACGAGCCAUAUCACCUG 20 7741 myoC-7996 + CACUACGAGCCAUAUCACCUG 21 7742 myoC-7997 + UCACUACGAGCCAUAUCACCUG 22 7743 myoC-7998 + GUCACUACGAGCCAUAUCACCUG 23 7744 myoC-7999 + GGUCACUACGAGCCAUAUCACCUG 24 7745 myoC-8000 + CCUCAUUGGUGAAAUCUG 18 7746 myoC-8001 + ACCUCAU UGGUGAAAUCUG 19 7747 myoC-1226 + AACCUCAUUGGUGAAAUCUG 20 1526 myoC-8002 + GAACCUCAUUGGUGAAAUCUG 21 7748 myoC-8003 + AG AACCUCAUUGGUGAAAUCUG 22 7749 myoC-8004 + AAGAACCUCAU UGGUGAAAUCUG 23 7750 myoC-8005 + CAAGAACCUCAUUGGUGAAAUCUG 24 7751 myoC-8006 + AGACUCACCUCCAGAGUG 18 7752 myoC-8007 + CAGACUCACCUCCAGAGUG 19 7753 myoC-2275 + GCAGACUCACCUCCAGAGUG 20 2355 myoC-8008 + GGCAGACUCACCUCCAGAGUG 21 7754 myoC-8009 + UGGCAGACUCACCUCCAGAGUG 22 7755 myoC-8010 + CUGGCAGACUCACCUCCAGAGUG 23 7756 myoC-8011 + CCUGGCAGACUCACCUCCAGAGUG 24 7757 myoC-8012 + AUGCCAAGAACCUCAUUG 18 7758 myoC-8013 + CAUGCCAAGAACCUCAU UG 19 7759 myoC-2301 + GCAUGCCAAGAACCUCAUUG 20 2374 myoC-8014 + UGCAUGCCAAGAACCUCAUUG 21 7760 myoC-8015 + GUGCAUGCCAAGAACCUCAU UG 22 7761 myoC-8016 + UGUGCAUGCCAAGAACCUCAUUG 23 7762 myoC-8017 + GUGUGCAUG CC AAG A ACCU CAU U G 24 7763 myoC-8018 + GAACCUCAUUGG UGAAAU 18 7764 myoC-8019 + AGAACCUCAUUGGUGAAAU 19 7765 myoC-2300 + AAGAACCUCAUUGGUGAAAU 20 2373 myoC-8020 + CAAGAACCUCAUUGGUGAAAU 21 7766 myoC-8021 + CCAAGAACCUCAUUGGUGAAAU 22 7767 myoC-8022 + GCCAAGAACCUCAU UGGUGAAAU 23 7768 myoC-8023 + UGCCAAGAACCUCAUUGGUG AAA U 24 7769 myoC-8024 + A A AG G U AC A A A U A AC A A U 18 7770 myoC-8025 + A A A AG G U AC A A A U AAC A A U 19 7771 myoC-8026 + C A A A AG G U AC A A A U A AC A A U 20 7772 myoC-8027 + U C A A A AG G U AC A A A U A AC A A U 21 7773 myoC-8028 + AUCAAAAGGUACAAAUAACAAU 22 7774 myoC-8029 + CA U C AA A AG G U AC AA A U A AC A A U 23 7775 myoC-8030 + AC A U C A A A AG G U AC A A A U A AC A A U 24 7776 myoC-8031 + AG A A A A AG AGU UCCUAAU 18 7777 myoC-8032 + GAGAAAAAGAGUUCCUAAU 19 7778 myoC-2259 + AGAGAAAAAGAGU UCCUAAU 20 2341 myoC-8033 + CAG AG AAAAAG AG UUCCUAAU 21 7779 myoC-8034 + ACAG AG AAAAAG AG UUCCUAAU 22 7780 myoC-8035 + CA CAG AG AAAAAG AGUUCCUAAU 23 7781 myoC-8036 + CCACAG AG AAAAAG AG UUCCUAAU 24 7782 myoC-8037 + A A AG G A A A A A UAUAGUAU 18 7783 myoC-8038 + UAAAGGAAAAAUAUAGUAU 19 7784 myoC-2253 + GUAAAGGAAAAAUAUAGUAU 20 2337 myoC-8039 + UG UAAAGGAAAAAUAUAGUAU 21 7785 myoC-8040 + UUG UAAAGGAAAAAUAUAGUAU 22 7786 myoC-8041 + CU UG UAAAGGAAAAAUAUAGUAU 23 7787 myoC-8042 + GCUUGUAAAGGAAAAAUAUAGUAU 24 7788 myoC-8043 + UGGAGGGGCACAAGAACU 18 7789 myoC-8044 + AUGGAGGGGCACAAGAACU 19 7790 myoC-8045 + CAUGGAGGGGCACAAGAACU 20 7791 myoC-8046 + ACAUGGAGGGGCACAAGAACU 21 7792 myoC-8047 + GACAUGGAGGGGCACAAGAACU 22 7793 myoC-8048 + UG ACAUGGAGGGGCACAAGAACU 23 7794 myoC-8049 + CUGACAUGGAGGGGCACAAGAACU 24 7795 myoC-8050 + CGCCUGUAGCAGGUCACU 18 7796 myoC-8051 + GCGCCUG UAGCAGGUCACU 19 7797 myoC-8052 + AGCGCCUGUAGCAGGUCACU 20 7798 myoC-8053 + GAGCGCCUGUAGCAGGUCACU 21 7799 myoC-8054 + GGAGCGCCUGUAGCAGG UCACU 22 7800 myoC-8055 + UGG AGCGCCUGUAGCAGGUCACU 23 7801 myoC-8056 + CUGGAGCGCCUGUAGCAGGUCACU 24 7802 myoC-8057 + CUCCU U UUGCUAUGGACU 18 7803 myoC-8058 + UCUCCU UUUGCUAUGGACU 19 7804 myoC-8059 + U UCUCCUUUUGCUAUGGACU 20 7805 myoC-8060 + UU UCUCCUUU UGCUAUGGACU 21 7806 myoC-8061 + AU UUCUCCUUUUGCUAUGGACU 22 7807 myoC-8062 + UAUUUCUCCUUUUGCUAUGGACU 23 7808 myoC-8063 + U UAUUUCUCCUUUUGCUAUGGACU 24 7809 myoC-8064 + UUGAAAUAAUGAUUGCCU 18 7810 myoC-8065 + CUUGAAAUAAUGAUUGCCU 19 7811 myoC-2280 + ACU UGAAAUAAUGAU UGCCU 20 2359 myoC-8066 + CACUUGAAAUAAUGAU UGCCU 21 7812 myoC-8067 + CCACU UGAAAUAAUGAUUGCCU 22 7813 myoC-8068 + GCCACUUGAAAUAAUGAUUGCCU 23 7814 myoC-8069 + AGCCACUUGAAAUAAUGAUUGCCU 24 7815 myoC-8070 + AAUGCCAUUGUCUAUGCU 18 7816 myoC-8071 + AAAUGCCAUUGUCUAUGCU 19 7817 myoC-2240 + CAAAUGCCAUUGUCUAUGCU 20 2325 myoC-8072 + GCAAAUGCCAUUGUCUAUGCU 21 7818 myoC-8073 + GGCAAAUGCCAUUGUCUAUGCU 22 7819 myoC-8074 + UGGCAAAUGCCAUUGUCUAUGCU 23 7820 myoC-8075 + UUGGCAAAUGCCAUUGUCUAUGCU 24 7821 myoC-8076 + UU UAUUUCUCCUUU UGCU 18 7822 myoC-8077 + UUU UAUUUCUCCUU UUGCU 19 7823 myoC-8078 + CU UUUAUU UCUCCUUUUGCU 20 7824 myoC-8079 + CCUUU UAU UUCUCCUU UUGCU 21 7825 myoC-8080 + UCCUUU UAUUUCUCCU UUUGCU 22 7826 myoC-8081 + GUCCUUU UAUUUCUCCU UUUGCU 23 7827 myoC-8082 + GGUCCU UUUAUUUCUCCUUUUGCU 24 7828 myoC-8083 + ACCUCAU UGG UGAAAUCU 18 7829 myoC-8084 + AACCUCAUUGGUGAAAUCU 19 7830 myoC-1225 + GAACCUCAUUGGUGAAAUCU 20 1525 myoC-8085 + AGAACCUCAU UGGUGAAAUCU 21 7831 myoC-8086 + AAGAACCUCAU UGGUGAAAUCU 22 7832 myoC-8087 + CAAGAACCUCAUUGGUGAAAUCU 23 7833 myoC-8088 + CCAAGAACCUCAU UGGUGAAAUCU 24 7834 myoC-8089 + UAAAACAACUGUGUAUCU 18 7835 myoC-8090 + U UAAAACAACUG UGUAUCU 19 7836 myoC-2306 + UUUAAAACAACUGUGUAUCU 20 2377 myoC-8091 + CU UUAAAACAACUGUGUAUCU 21 7837 myoC-8092 + GCUUUAAAACAACUGUGUAUCU 22 7838 myoC-8093 + AGCU UUAAAACAACUGUGUAUCU 23 7839 myoC-8094 + UAGCUUUAAAACAACUGUGUAUCU 24 7840 myoC-8095 + UCUGUUUGGCUUUACUCU 18 7841 myoC-8096 + AUCUGUU UGGCU UUACUCU 19 7842 myoC-2267 + AAUCUGUUUGGCUUUACUCU 20 2347 myoC-8097 + GAAUCUGUUUGGCUUUACUCU 21 7843 myoC-8098 + UGAAUCUGUUUGGCUU UACUCU 22 7844 myoC-8099 + U UGAAUCUGUUUGGCU UUACUCU 23 7845 myoC-8100 + CU UGAAUCUGU UUGGCUUUACUCU 24 7846 myoC-8101 + UAAUCUAAAUGAAGCUCU 18 7847 myoC-8102 + CUAAUCUAAAUGAAGCUCU 19 7848 myoC-8103 + ACUAAUCUAAAUGAAGCUCU 20 7849 myoC-8104 + CACUAAUCUAAAUGAAGCUCU 21 7850 myoC-8105 + CCACUAAUCUAAAUGAAGCUCU 22 7851 myoC-8106 + ACCACUAAUCUAAAUGAAGCUCU 23 7852 myoC-8107 + AACCACUAAUCUAAAUGAAGCUCU 24 7853 myoC-8108 + GCUAGCUGUGCAGUCUCU 18 7854 myoC-8109 + UGCUAGCUGUGCAGUCUCU 19 7855 myoC-5480 + GUGCUAGCUGUGCAGUCUCU 20 5226 myoC-8110 + UGUGCUAGCUGUGCAGUCUCU 21 7856 myoC-8111 + UUGUGCUAGCUGUGCAGUCUCU 22 7857 myoC-8112 + CU UGUGCUAGCUGUGCAGUCUCU 23 7858 myoC-8113 + UCUUGUGCUAGCUGUGCAGUCUCU 24 7859 myoC-4531 + GAGCAGUGUCUCGGGUCU 18 4277 myoC-4532 + CGAGCAGUGUCUCGGGUCU 19 4278 myoC-204 + CCGAGCAGUGUCUCGGG UCU 20 590 myoC-4533 + CCCGAGCAGUGUCUCGGGUCU 21 4279 myoC-4534 + GCCCGAGCAGUGUCUCGGGUCU 22 4280 myoC-4535 + AGCCCGAGCAGUGUCUCGGGUCU 23 4281 myoC-4536 + CAGCCCGAGCAGUGUCUCGGGUCU 24 4282 myoC-4537 + UCUGCAUUCUUACCUUCU 18 4283 myoC-4538 + CUCUGCAUUCU UACCUUCU 19 4284 myoC-4539 + ACUCUGCAUUCUUACCUUCU 20 4285 myoC-4540 + CACUCUGCAUUCUUACCUUCU 21 4286 myoC-4541 + CCACUCUGCAUUCUUACCUUCU 22 4287 myoC-4542 + CCCACUCUGCAUUCUUACCUUCU 23 4288 myoC-4543 + CCCCACUCUGCAU UCUUACCUUCU 24 4289 myoC-8114 + AAUCUGGGGAACUCUUCU 18 7860 myoC-8115 + AAAUCUGGGGAACUCUUCU 19 7861 myoC-2296 + GAAAUCUGGGGAACUCU UCU 20 2372 myoC-8116 + UGAAAUCUGGGGAACUCUUCU 21 7862 myoC-8117 + GUGAAAUCUGGGGAACUCU UCU 22 7863 myoC-8118 + GG UGAAAUCUGGGGAACUCUUCU 23 7864 myoC-8119 + UGGUGAAAUCUGGGGAACUCUUCU 24 7865 myoC-8120 + GAGUCUGACGUGAUCAGU 18 7866 myoC-8121 + GGAGUCUGACGUGAUCAGU 19 7867 myoC-2229 + UGGAGUCUGACGUGAUCAGU 20 2318 myoC-8122 + CUGGAGUCUGACGUGAUCAGU 21 7868 myoC-8123 + CCUGGAGUCUGACGUGAUCAGU 22 7869 myoC-8124 + UCCUGGAGUCUGACGUGAUCAGU 23 7870 myoC-8125 + GUCCUGGAGUCUGACGUGAUCAGU 24 7871 myoC-8126 + UAAAAUGU UAAAUUUAGU 18 7872 myoC-8127 + AUAAAAUGUUAAAUU UAGU 19 7873 myoC-2286 + AAUAAAAUGUUAAAUU UAGU 20 2365 myoC-8128 + GAAUAAAAUGUUAAAU UUAGU 21 7874 myoC-8129 + GG AAUAAAAUGU UAAAUUUAGU 22 7875 myoC-8130 + UGG AAUAAAAUGU UAAAUUUAGU 23 7876 myoC-8131 + AUGGAAUAAAAUGUUAAAUU UAGU 24 7877 myoC-4558 + CCGAGCAGUGUCUCGGGU 18 4304 myoC-4559 + CCCGAGCAGUGUCUCGGGU 19 4305 myoC-1699 + GCCCGAGCAGUGUCUCGGGU 20 1951 myoC-4560 + AGCCCGAGCAGUGUCUCGGGU 21 4306 myoC-4561 + CAGCCCGAGCAGUGUCUCGGGU 22 4307 myoC-4562 + ACAGCCCGAGCAG UGUCUCGGGU 23 4308 myoC-4563 + CACAG CCCG AG CAG UGUCUCGGGU 24 4309 myoC-8132 + U AAA U A U ACC A A A AC U G U 18 7878 myoC-8133 + AUAAAUAUACCAAAACUGU 19 7879 myoC-2282 + A A U AAA U A U ACC A A A AC U G U 20 2361 myoC-8134 + CA A U A A A U A U ACC A A A AC U G U 21 7880 myoC-8135 + CCA A UAAAUAUACCAAAACUGU 22 7881 myoC-8136 + G CC A A U AAA U A U ACC A A A AC U G U 23 7882 myoC-8137 + AGCCAAUAAAUAUACCAAAACUGU 24 7883 myoC-8138 + ACAACAGUGUCAAUACU U 18 7884 myoC-8139 + AACAACAGUGUCAAUACUU 19 7885 myoC-2279 + CAACAACAGUGUCAAUACUU 20 2358 myoC-8140 + CCAACAACAGUGUCAAUACUU 21 7886 myoC-8141 + ACCAACAACAGUGUCAAUACUU 22 7887 myoC-8142 + UACCAACAACAGUGUCAAUACU U 23 7888 myoC-8143 + AUACCAACAACAGUGUCAAUACU U 24 7889 myoC-8144 + AUGCCAU UGUCUAUGCUU 18 7890 myoC-8145 + AAUGCCAUUGUCUAUGCUU 19 7891 myoC-1073 + AAAUGCCAUUGUCUAUGCUU 20 1373 myoC-8146 + CAAAUGCCAUUGUCUAUGCUU 21 7892 myoC-8147 + GCAAAUGCCAUUGUCUAUGCUU 22 7893 myoC-8148 + GGCAAAUGCCAUUGUCUAUGCUU 23 7894 myoC-8149 + UGGCAAAUGCCAUUGUCUAUGCUU 24 7895 myoC-8150 + AAAACAACUGUGUAUCUU 18 7896 myoC-8151 + UAAAACAACUGUGUAUCUU 19 7897 myoC-1220 + U U AAAACAACUG UGU AUCU U 20 1520 myoC-8152 + UUUAAAACAACUGUGUAUCU U 21 7898 myoC-8153 + CU UUAAAACAACUGUGUAUCUU 22 7899 myoC-8154 + GCU UUAAAACAACUGUGUAUCUU 23 7900 myoC-8155 + AGCU UUAAAACAACUGUGUAUCU U 24 7901 myoC-8156 + U UCAAAU UCACAGGCU U U 18 7902 myoC-8157 + AU UCAAAUUCACAGGCUUU 19 7903 myoC-2285 + CAU UCAAAU UCACAGGCU UU 20 2364 myoC-8158 + UCAUUCAAAU UCACAGGCUUU 21 7904 myoC-8159 + CUCAUUCAAAUUCACAGGCUUU 22 7905 myoC-8160 + CCUCAUUCAAAU UCACAGGCU UU 23 7906 myoC-8161 + UCCUCAUUCAAAUUCACAGGCUUU 24 7907 myoC-8162 + AAACAACUGUGUAUCUU U 18 7908 myoC-8163 + AAAACAACUGUGUAUCUUU 19 7909 myoC-1221 + UAAAACAACUGUGUAUCUUU 20 1521 myoC-8164 + UUAAAACAACUGUGUAUCUU U 21 7910 myoC-8165 + U UUAAAACAACUGUGUAUCUU U 22 7911 myoC-8166 + CUU UAAAACAACUGUGUAUCUUU 23 7912 myoC-8167 + GCU UUAAAACAACUGUGUAUCUUU 24 7913 myoC-8168 - UUGCCUGGCAUUCAAAAA 18 7914 myoC-8169 - UUUGCCUGGCAUUCAAAAA 19 7915 myoC-1971 - UUU UGCCUGGCAU UCAAAAA 20 2129 myoC-8170 - CU UUUGCCUGGCAUUCAAAAA 21 7916 myoC-8171 - GCU UUUGCCUGGCAUUCAAAAA 22 7917 myoC-8172 - AGCU UUUGCCUGGCAU UCAAAAA 23 7918 myoC-8173 - UAGCUUU UGCCUGGCAUUCAAAAA 24 7919 myoC-8174 - AGGGGAGGAGAAG A A A A A 18 7920 myoC-8175 - CAGGGGAGGAGAAGAAAAA 19 7921 myoC-1987 - GCAGGGGAGGAGAAGAAAAA 20 2139 myoC-8176 - CGCAGGGGAGGAGAAGAAAAA 21 7922 myoC-8177 - G CG C AG G G G AG G AG A AG A A A A A 22 7923 myoC-8178 - AGCGCAGGGGAGGAGAAGAAAAA 23 7924 myoC-8179 - CAGCGCAGGGGAGGAGAAGAAAAA 24 7925 myoC-8180 - UUCACAGUCCAUAGCAAA 18 7926 myoC-8181 - UUUCACAGUCCAUAGCAAA 19 7927 myoC-5447 - U U U U CACAG U CC AU AG CAA A 20 5193 myoC-8182 - GU UUUCACAGUCCAUAG CAA A 21 7928 myoC-8183 - AGUUU UCACAGUCCAUAGCAAA 22 7929 myoC-8184 - CAG U U U U CACAG U CC AU AG CAA A 23 7930 myoC-8185 - UCAGUUUUCACAGUCCAUAG CAA A 24 7931 myoC-3441 - AGCGACUAAGGCAAGAAA 18 3187 myoC-3442 - AAGCGACUAAGGCAAGAAA 19 3188 myoC-1647 - G A AG CG AC U A AG G C A AG AAA 20 1913 myoC-3443 - AG AAGCGACUAAGGCAAGAAA 21 3189 myoC-3444 - AAG AAGCGACUAAGGCAAGAAA 22 3190 myoC-3445 - GAAG AAGCGACUAAGGCAAGAAA 23 3191 myoC-3446 - AG A AG AAG CG AC U AAG G C A AG AAA 24 3192 myoC-8186 - GCAGGGGAGGAGAAGAAA 18 7932 myoC-8187 - CGCAGGGGAGGAGAAGAAA 19 7933 myoC-1986 - GCGCAGGGGAGGAGAAGAAA 20 2138 myoC-8188 - AG CG C AG G G G AG G AG A AG AAA 21 7934 myoC-8189 - CAGCGCAGGGGAGGAGAAGAAA 22 7935 myoC-8190 - GCAGCGCAGGGGAGGAGAAGAAA 23 7936 myoC-8191 - UGCAGCGCAGGGGAGGAGAAGAAA 24 7937 myoC-8192 - UACUAUCUGAUUCAGAAA 18 7938 myoC-8193 - UUACUAUCUGAUUCAGAAA 19 7939 myoC-2028 - UUUACUAUCUGAU UCAGAAA 20 2163 myoC-8194 - GUU UACUAUCUGAUUCAGAAA 21 7940 myoC-8195 - UGU UUACUAUCUGAUUCAGAAA 22 7941 myoC-8196 - AUGUUUACUAUCUGAUUCAGAAA 23 7942 myoC-8197 - GAUGUUUACUAUCUGAUUCAGAAA 24 7943 myoC-8198 - UGAUUU UGUCAUUACCAA 18 7944 myoC-8199 - GUGAU UUUGUCAU UACCAA 19 7945 myoC-2050 - UGUGAUUUUGUCAUUACCAA 20 2181 myoC-8200 - CUGUGAUUUUGUCAUUACCAA 21 7946 myoC-8201 - CCUGUGAUUU UGUCAUUACCAA 22 7947 myoC-8202 - ACCUGUGAU UUUGUCAUUACCAA 23 7948 myoC-8203 - UACCUGUGAU UUUGUCAUUACCAA 24 7949 myoC-8204 - A A A AC UGGGCCAGAG C A A 18 7950 myoC-8205 - AAAAACUGGGCCAGAGCAA 19 7951 myoC-1973 - C A A A A AC U G G G CC AG AG C A A 20 2131 myoC-8206 - U C A A A A AC UGGGCCAGAG C A A 21 7952 myoC-8207 - UUCAAAAACUGGGCCAGAGCAA 22 7953 myoC-8208 - A U U C A A A A AC UGGGCCAGAGCAA 23 7954 myoC-8209 - CAU UCAAAAACUGGGCCAG AGCAA 24 7955 myoC-8210 - U U U C AC AG U CC A U AG C A A 18 7956 myoC-8211 - UU UUCACAGUCCAUAGCAA 19 7957 myoC-8212 - GUUU UCACAGUCCAUAGCAA 20 7958 myoC-8213 - AG U U U U CACAG U CCAU AG CAA 21 7959 myoC-8214 - CAGU UUUCACAGUCCAU AGCAA 22 7960 myoC-8215 - UCAG UUUUCACAGUCCAUAGCAA 23 7961 myoC-8216 - GUCAGUUU UCACAGUCCAUAGCAA 24 7962 myoC-8217 - G G G A A A A A A U C AG U U CAA 18 7963 myoC-8218 - G G G G A A A A A A U C AG U U CAA 19 7964 myoC-1142 - G G G G G A A A A A A U C AG U U CAA 20 1442 myoC-8219 - G G G G G G A A A A A A U C AG U U CAA 21 7965 myoC-8220 - UGGGGGGAAAAAAUCAGUUCAA 22 7966 myoC-8221 - GUGGGGGGAAAAAAUCAGUUCAA 23 7967 myoC-8222 - UGUGGGGGGAAAAAAUCAGUUCAA 24 7968 myoC-8223 - AU UU UAUUCCAUUGCGAA 18 7969 myoC-8224 - CAU UUUAU UCCAU UGCGAA 19 7970 myoC-2049 - ACAUU UUAUUCCAUUGCGAA 20 2180 myoC-8225 - AACAU UUUAUUCCAU UGCGAA 21 7971 myoC-8226 - UAACAU UUUAUUCCAUUGCGAA 22 7972 myoC-8227 - UUAACAUUUUAUUCCAUUGCGAA 23 7973 myoC-8228 - U U U AACAU U U U AU U CCAU UGCG AA 24 7974 myoC-8229 - U AG CAA A AG GAG AAA U A A 18 7975 myoC-8230 - A U AG CAA A AG G AG AAA U A A 19 7976 myoC-8231 - C A U AG CAA A AG GAG AAA U A A 20 7977 myoC-8232 - CCAU AG CAA A AG G AG AAA U A A 21 7978 myoC-8233 - U CC A U AG CAA A AG G AG AAA U A A 22 7979 myoC-8234 - GUCCAUAG CAA A AG G AG AAA U A A 23 7980 myoC-8235 - AGUCCAUAGCAAAAGGAGAAAUAA 24 7981 myoC-8236 - CAAG U C AC AAG G U AG U AA 18 7982 myoC-8237 - GCAAGUCACAAGGUAGUAA 19 7983 myoC-2016 - AGCAAGUCACAAGGUAG UAA 20 2154 myoC-8238 - GAGCAAGUCACAAGGUAGUAA 21 7984 myoC-8239 - UG AGCAAGUCACAAGGUAGUAA 22 7985 myoC-8240 - CUGAGCAAGUCACAAGGUAGUAA 23 7986 myoC-8241 - UCUGAGCAAGUCACAAGGUAGUAA 24 7987 myoC-8242 - GU UGCAGAUACGUUGUAA 18 7988 myoC-8243 - UGUUGCAGAUACGU UGUAA 19 7989 myoC-2051 - UUGUUGCAGAUACGUUGUAA 20 2182 myoC-8244 - GU UGUUGCAGAUACGU UGUAA 21 7990 myoC-8245 - AGU UGUUGCAGAUACGUUGUAA 22 7991 myoC-8246 - CAG UUGUUGCAGAUACGUUGUAA 23 7992 myoC-8247 - ACAGUUGUUGCAGAUACGUUGUAA 24 7993 myoC-8248 - CAAUCCCGUUUCU UUUAA 18 7994 myoC-8249 - GCAAUCCCG UUUCU UUUAA 19 7995 myoC-2022 - GGCAAUCCCG UUUCU UUUAA 20 2158 myoC-8250 - GGGCAAUCCCGUU UCUU UUAA 21 7996 myoC-8251 - AGGGCAAUCCCGU UUCUU UUAA 22 7997 myoC-8252 - AAGGGCAAUCCCGUUUCUUUUAA 23 7998 myoC-8253 - CAAGGGCAAUCCCGUU UCUUU UAA 24 7999 myoC-8254 - UGGAGCAGCUGAGCCACA 18 8000 myoC-8255 - CUGGAGCAGCUGAGCCACA 19 8001 myoC-1047 - GCUGGAGCAGCUGAGCCACA 20 1347 myoC-8256 - AGCUGGAGCAGCUGAGCCACA 21 8002 myoC-8257 - GAGCUGGAGCAGCUGAGCCACA 22 8003 myoC-8258 - AG AGCUGGAGCAGCUGAGCCACA 23 8004 myoC-8259 - CAG AGCUGGAGCAGCUGAGCCACA 24 8005 myoC-8260 - GUUCCCCAGAUUUCACCA 18 8006 myoC-8261 - AG U U CCCCAG AU U U CACCA 19 8007 myoC-2058 - GAGU UCCCCAGAUUUCACCA 20 2189 myoC-8262 - AGAGUUCCCCAGAU UUCACCA 21 8008 myoC-8263 - AAG AG U UCCCCAG AU U U CACCA 22 8009 myoC-8264 - GAAGAGUU CCCCAG AU UU CACCA 23 8010 myoC-8265 - AG AAG AGU UCCCCAG AU U UCACCA 24 8011 myoC-8266 - GGCAGUGGGAAU UGACCA 18 8012 myoC-8267 - GGGCAGUGGGAAUUGACCA 19 8013 myoC-1996 - AGGGCAGUGGGAAUUGACCA 20 2145 myoC-8268 - AAGGGCAGUGGGAAUUGACCA 21 8014 myoC-8269 - CAAGGGCAGUGGGAAUUGACCA 22 8015 myoC-8270 - UCAAGGGCAGUGGGAAUUGACCA 23 8016 myoC-8271 - UUCAAGGGCAGUGGGAAUUGACCA 24 8017 myoC-8272 - GCUGGAGCAGCUGAGCCA 18 8018 myoC-8273 - AGCUGGAGCAGCUGAGCCA 19 8019 myoC-1949 - GAGCUGGAGCAGCUGAGCCA 20 2116 myoC-8274 - AG AGCUGGAGCAGCUGAGCCA 21 8020 myoC-8275 - CAG AGCUGGAGCAGCUGAGCCA 22 8021 myoC-8276 - GCAG AGCUGGAGCAGCUGAGCCA 23 8022 myoC-8277 - GGCAGAGCUGGAGCAGCUGAGCCA 24 8023 myoC-4656 - CUGUGCCACCAGGCUCCA 18 4402 myoC-4657 - G CU G U G CCACC AG G CU CCA 19 4403 myoC-1662 - GGCUGUGCCACCAGGCUCCA 20 1924 myoC-4658 - GGGCUGUGCCACCAGGCUCCA 21 4404 myoC-4659 - CGGGCUGUGCCACCAGGCUCCA 22 4405 myoC-4660 - UCGGGCUGUGCCACCAGGCUCCA 23 4406 myoC-4661 - CUCGGGCUGUGCCACCAGGCUCCA 24 4407 myoC-8278 - GGAGUGACCUGCAGCGCA 18 8024 myoC-8279 - CGGAGUGACCUGCAGCGCA 19 8025 myoC-1119 - ACGGAGUGACCUGCAGCGCA 20 1419 myoC-8280 - CACGGAGUGACCUGCAGCGCA 21 8026 myoC-8281 - GCACGGAGUGACCUGCAGCGCA 22 8027 myoC-8282 - AGCACGGAGUGACCUGCAGCGCA 23 8028 myoC-8283 - CAGCACGGAGUGACCUGCAGCGCA 24 8029 myoC-8284 - CAGAUUCAUUCAAGGGCA 18 8030 myoC-8285 - ACAGAUUCAUUCAAGGGCA 19 8031 myoC-1993 - GACAGAUUCAUUCAAGGGCA 20 2144 myoC-8286 - AG ACAG AU UCAU UCAAGGGCA 21 8032 myoC-8287 - AAGACAGAUUCAUUCAAGGGCA 22 8033 myoC-8288 - AAAGACAGAU UCAU UCAAGGGCA 23 8034 myoC-8289 - GAAAGACAGAUUCAU UCAAGGGCA 24 8035 myoC-8290 - AUGCUUCAGGAAAGCUCA 18 8036 myoC-8291 - AAUGCU UCAGG AAAGCUCA 19 8037 myoC-1968 - CAAUGCUUCAGGAAAGCUCA 20 2126 myoC-8292 - ACAAUGCU UCAGG AAAGCUCA 21 8038 myoC-8293 - CA CAAUGCUUCAGGAAAGCUCA 22 8039 myoC-8294 - CCACAAUGCU UCAGG AAAGCUCA 23 8040 myoC-8295 - GCCACAAUGCU UCAGG AAAGCUCA 24 8041 myoC-8296 - G G G G A A A A A AU C AG U U C A 18 8042 myoC-8297 - G G G G G A A A A A AU C AG U U C A 19 8043 myoC-1141 - GGGGGGAAAAAAUCAG UUCA 20 1441 myoC-8298 - UGGGGGGAAAAAAUCAGUUCA 21 8044 myoC-8299 - GUGGGGGGAAAAAAUCAGUUCA 22 8045 myoC-8300 - UG UGGGGGGAAAAAAUCAGU UCA 23 8046 myoC-8301 - UUGUGGGGGGAAAAAAUCAGUUCA 24 8047 myoC-8302 - GGGAGGAGAAGAAAAAGA 18 8048 myoC-8303 - GGGGAGGAGAAGAAAAAGA 19 8049 myoC-1988 - AGGGGAGGAGAAGAAAAAGA 20 2140 myoC-8304 - CAGGGGAGGAGAAGAAAAAGA 21 8050 myoC-8305 - GCAGGGGAGGAGAAGAAAAAGA 22 8051 myoC-8306 - CGCAGGGGAGGAGAAGAAAAAGA 23 8052 myoC-8307 - GCGCAGGGGAGGAGAAGAAAAAGA 24 8053 myoC-8308 - GGUGCCUGAGAUGCAAGA 18 8054 myoC-8309 - UGGUGCCUGAGAUGCAAGA 19 8055 myoC-2063 - UUGGUGCCUGAGAUGCAAGA 20 2194 myoC-8310 - AU UGGUGCCUGAGAUGCAAGA 21 8056 myoC-8311 - CAU UGGUGCCUGAGAUGCAAGA 22 8057 myoC-8312 - ACAU UGGUGCCUGAGAUGCAAGA 23 8058 myoC-8313 - GACAUUGGUGCCUGAGAUGCAAGA 24 8059 myoC-4668 - AGAAGGUAAGAAUGCAGA 18 4414 myoC-4669 - GAGAAGGUAAGAAUGCAGA 19 4415 myoC-4670 - AGAGAAGGUAAGAAUGCAGA 20 4416 myoC-4671 - CAGAGAAGGUAAGAAUGCAGA 21 4417 myoC-4672 - CCAGAGAAGGUAAGAAUGCAGA 22 4418 myoC-4673 - UCCAGAGAAGGUAAGAAUGCAGA 23 4419 myoC-4674 - CUCCAGAGAAGGUAAGAAUGCAGA 24 4420 myoC-4681 - GAGGUAGCAAGGCUGAGA 18 4427 myoC-4682 - GGAGGUAGCAAGGCUGAGA 19 4428 myoC-198 - AGGAGGUAGCAAGGCUGAGA 20 584 myoC-4683 - CAGGAGGUAGCAAGGCUGAGA 21 4429 myoC-4684 - CCAGGAGGUAGCAAGGCUGAGA 22 4430 myoC-4685 - GCCAGGAGGUAGCAAGGCUGAGA 23 4431 myoC-4686 - AGCCAGGAGGUAGCAAGGCUGAGA 24 4432 myoC-8314 - UGAGGGGGGAUGUUGAGA 18 8060 myoC-8315 - GUGAGGGGGGAUGUUGAGA 19 8061 myoC-1041 - UG UGAGGGGGGAUGUUGAGA 20 1341 myoC-8316 - CUG UGAGGGGGGAUG UUGAGA 21 8062 myoC-8317 - UCUG UGAGGGGGGAUGUUGAGA 22 8063 myoC-8318 - CUCUGUGAGGGGGGAUGUUGAGA 23 8064 myoC-8319 - UCUCUGUGAGGGGGGAUGUUGAGA 24 8065 myoC-8320 - U C ACG U C AG AC U CC AG G A 18 8066 myoC-8321 - AUCACGUCAGACUCCAGGA 19 8067 myoC-1964 - GAUCACGUCAGACUCCAGGA 20 2123 myoC-8322 - UG AUCACGUCAGACUCCAGGA 21 8068 myoC-8323 - CUGAUCACGUCAGACUCCAGGA 22 8069 myoC-8324 - ACUG AUCACGUCAGACUCCAGGA 23 8070 myoC-8325 - CACUGAUCACGUCAGACUCCAGGA 24 8071 myoC-8326 - GGGGAUGUUGAGAGGGGA 18 8072 myoC-8327 - GGGGGAUGUUGAGAGGGGA 19 8073 myoC-1043 - GGGGGGAUGU UGAGAGGGGA 20 1343 myoC-8328 - AGGGGGGAUGUUGAGAGGGGA 21 8074 myoC-8329 - GAGGGGGGAUGUUGAGAGGGGA 22 8075 myoC-8330 - UG AGGGGGGAUGUUGAGAGGGGA 23 8076 myoC-8331 - GUGAGGGGGGAUGUUGAGAGGGGA 24 8077 myoC-8332 - AGGGGAGGUGGAGGGGGA 18 8078 myoC-8333 - CAGGGGAGGUGGAGGGGGA 19 8079 myoC-1959 - ACAGGGGAGGUGGAGGGGGA 20 2119 myoC-8334 - CA CAGGGGAGGUGGAGGGGGA 21 8080 myoC-8335 - CCACAGGGGAGGUGGAGGGGGA 22 8081 myoC-8336 - GCCACAGGGGAGGUGGAGGGGGA 23 8082 myoC-8337 - AGCCACAGGGGAGGUGGAGGGGGA 24 8083 myoC-8338 - AGCCACAGGGGAGGUGGA 18 8084 myoC-8339 - GAGCCACAGGGGAGGUGGA 19 8085 myoC-1052 - UG AGCCACAGGGGAGGUGGA 20 1352 myoC-8340 - CUGAGCCACAGGGGAGG UGG A 21 8086 myoC-8341 - GCUG AGCCACAGGGGAGGUGGA 22 8087 myoC-8342 - AGCUGAGCCACAGGGGAGGUGGA 23 8088 myoC-8343 - CAGCUGAGCCACAGGGGAGGUGGA 24 8089 myoC-8344 - UU UUAAAGCUAGGGGUGA 18 8090 myoC-8345 - GU UUUAAAGCUAGGGG UGA 19 8091 myoC-2070 - UGUUUUAAAGCUAGGGGUGA 20 2201 myoC-8346 - UUGUUUUAAAGCUAGGGGUGA 21 8092 myoC-8347 - GU UGUUUUAAAGCUAGGGGUGA 22 8093 myoC-8348 - AGUUGUU UUAAAGCUAGGGGUGA 23 8094 myoC-8349 - CAGU UGU UUUAAAGCUAGGGGUGA 24 8095 myoC-8350 - CCCUGUGAUUCUCUGUGA 18 8096 myoC-8351 - UCCCUGUGAUUCUCUGUGA 19 8097 myoC-1036 - UUCCCUGUGAUUCUCUGUGA 20 1336 myoC-8352 - CUUCCCUGUGAUUCUCUGUGA 21 8098 myoC-8353 - ACUUCCCUGUGAUUCUCUGUGA 22 8099 myoC-8354 - CACUUCCCUGUGAU UCUCUGUGA 23 8100 myoC-8355 - ACACUUCCCUGUGAUUCUCUGUGA 24 8101 myoC-8356 - UGUGAGGGGGGAUGUUGA 18 8102 myoC-8357 - CUGUGAGGGGGGAUGU UGA 19 8103 myoC-1939 - UCUGUGAGGGGGGAUGUUGA 20 2111 myoC-8358 - CUCUGUGAGGGGGGAUGUUGA 21 8104 myoC-8359 - UCUCUGUGAGGGGGGAUGUUGA 22 8105 myoC-8360 - UUCUCUGUGAGGGGGGAUGUUGA 23 8106 myoC-8361 - AUUCUCUGUGAGGGGGGAUGU UGA 24 8107 myoC-8362 - GAAAGCCUGUGAAUUUGA 18 8108 myoC-8363 - AGAAAGCCUGUGAAUUUGA 19 8109 myoC-2045 - CAGAAAGCCUGUGAAUU UGA 20 2177 myoC-8364 - CCAGAAAGCCUGUGAAUUUGA 21 8110 myoC-8365 - UCCAGAAAGCCUGUGAAUUUGA 22 8111 myoC-8366 - GUCCAGAAAGCCUGUGAAUUUGA 23 8112 myoC-8367 - AGUCCAGAAAGCCUGUGAAUU UGA 24 8113 myoC-8368 - GGAAAUCUGCCGCU UCUA 18 8114 myoC-8369 - GGGAAAUCUGCCGCUUCUA 19 8115 myoC-2074 - GGGGAAAUCUGCCGCUUCUA 20 2205 myoC-8370 - GGGGGAAAUCUGCCGCUUCUA 21 8116 myoC-8371 - GGGGGGAAAUCUGCCGCUUCUA 22 8117 myoC-8372 - AGGGGGGAAAUCUGCCGCU UCUA 23 8118 myoC-8373 - GAGGGGGGAAAUCUGCCGCUUCUA 24 8119 myoC-8374 - CACAAGACAGAUGAAUUA 18 8120 myoC-8375 - GCACAAG ACAGAUG AAU U A 19 8121 myoC-5461 - AGCACAAGACAGAUGAAUUA 20 5207 myoC-8376 - U AGCACAAG ACAGAUG AAU U A 21 8122 myoC-8377 - CU AGCACAAGACAGAUGAAUUA 22 8123 myoC-8378 - GCU AGCACAAGACAGAUGAAUUA 23 8124 myoC-8379 - AGCU AGCACAAGACAGAUGAAUUA 24 8125 myoC-8380 - AAU CCCG U U UCU U U U AAC 18 8126 myoC-8381 - CAAUCCCGU U UCUUU UAAC 19 8127 myoC-1151 - GCAAUCCCGU UUCUUU UAAC 20 1451 myoC-8382 - GGCAAUCCCG UUUCU UU UAAC 21 8128 myoC-8383 - GGGCAAUCCCGUUUCUU UUAAC 22 8129 myoC-8384 - AGGGCAAUCCCGUUUCU UUUAAC 23 8130 myoC-8385 - AAGGGCAAUCCCGUU UCUUU UAAC 24 8131 myoC-8386 - CUGGAGCAGCUGAGCCAC 18 8132 myoC-8387 - GCUGGAGCAGCUGAGCCAC 19 8133 myoC-1046 - AGCUGGAGCAGCUGAGCCAC 20 1346 myoC-8388 - GAGCUGGAGCAGCUGAGCCAC 21 8134 myoC-8389 - AG AGCUGGAGCAGCUGAGCCAC 22 8135 myoC-8390 - CAG AGCUGGAGCAGCUGAGCCAC 23 8136 myoC-8391 - GCAG AGCUGGAGCAGCUGAGCCAC 24 8137 myoC-8392 - CUGUGGAGUUAGCAGCAC 18 8138 myoC-8393 - UCUGUGGAGUUAGCAGCAC 19 8139 myoC-2021 - CUCUGUGGAGUUAGCAGCAC 20 2157 myoC-8394 - UCUCUGUGGAGU UAGCAGCAC 21 8140 myoC-8395 - UUCUCUG UGGAGUUAGCAGCAC 22 8141 myoC-8396 - U UUCUCUGUGGAGUUAGCAGCAC 23 8142 myoC-8397 - UUUUCUCUGUGGAGUUAGCAGCAC 24 8143 myoC-4765 - GGGCCAGUGUCCCCAGAC 18 4511 myoC-4766 - GGGGCCAGUGUCCCCAGAC 19 4512 myoC-1659 - AGG G G CCAG U G U CCCCAG AC 20 1921 myoC-4767 - AAGGGGCCAGUGUCCCCAGAC 21 4513 myoC-4768 - GAAGGGGCCAGUGUCCCCAGAC 22 4514 myoC-4769 - AG AAGGGGCCAGUGUCCCCAGAC 23 4515 myoC-4770 - GAG AAGGGGCCAGUGUCCCCAGAC 24 4516 myoC-8398 - GGGGAGGUGGAGGGGGAC 18 8144 myoC-8399 - AGGGGAGGUGGAGGGGGAC 19 8145 myoC-1055 - CAGGGGAGGUGGAGGGGGAC 20 1355 myoC-8400 - ACAGGGGAGGUGGAGGGGGAC 21 8146 myoC-8401 - CACAGGGGAGGUGGAGGGGGAC 22 8147 myoC-8402 - CCACAGGGGAGGUGGAGGGGGAC 23 8148 myoC-8403 - GCCACAGGGGAGGUGGAGGGGGAC 24 8149 myoC-8404 - GCAAGACGGUCGAAAACC 18 8150 myoC-8405 - UGCAAGACGGUCGAAAACC 19 8151 myoC-1924 - AUGCAAGACGGUCGAAAACC 20 2102 myoC-8406 - UAUGCAAGACGGUCGAAAACC 21 8152 myoC-8407 - U U A U G C A AG ACG G U CG A A A ACC 22 8153 myoC-8408 - CU UAUGCAAGACGGUCGAAAACC 23 8154 myoC-8409 - GCU UAUGCAAGACGGUCGAAAACC 24 8155 myoC-8410 - UUGGUUGGCUGUGCGACC 18 8156 myoC-8411 - AU UGGUUGGCUGUGCGACC 19 8157 myoC-1928 - CAU UGGUUGGCUGUGCGACC 20 2104 myoC-8412 - CCAUUGGUUGGCUGUGCGACC 21 8158 myoC-8413 - GCCAUUGGUUGGCUGUGCGACC 22 8159 myoC-8414 - UGCCAU UGGU UGGCUGUGCGACC 23 8160 myoC-8415 - CUGCCAU UGGUUGGCUGUGCGACC 24 8161 myoC-8416 - ACGUCAGACUCCAGGACC 18 8162 myoC-8417 - CACGUCAGACUCCAGGACC 19 8163 myoC-1965 - UCACGUCAGACUCCAGGACC 20 2124 myoC-8418 - AUCACGUCAGACUCCAGGACC 21 8164 myoC-8419 - GAUCACGUCAGACUCCAGGACC 22 8165 myoC-8420 - UGAUCACGUCAGACUCCAGGACC 23 8166 myoC-8421 - CUGAUCACGUCAGACUCCAGGACC 24 8167 myoC-8422 - CUAUAGGAAUGCUCUCCC 18 8168 myoC-8423 - UCUAUAGGAAUGCUCUCCC 19 8169 myoC-1211 - UUCUAUAGGAAUGCUCUCCC 20 1511 myoC-8424 - CUUCUAUAGGAAUGCUCUCCC 21 8170 myoC-8425 - GCUUCUAUAGGAAUGCUCUCCC 22 8171 myoC-8426 - CGCU UCUAUAGGAAUGCUCUCCC 23 8172 myoC-8427 - CCGCUUCUAUAGGAAUGCUCUCCC 24 8173 myoC-3549 - GGUUGGAAAGCAGCAGCC 18 3295 myoC-3550 - AG G U U G G A AAG CAG CAGCC 19 3296 myoC-107 - GAGGUUGGAAAGCAGCAGCC 20 511 myoC-3551 - GGAGGU UGGAAAGCAGCAGCC 21 3297 myoC-3552 - AGGAGGUUGGAAAGCAGCAGCC 22 3298 myoC-3553 - CAGGAGGUUGGAAAGCAGCAGCC 23 3299 myoC-3554 - CCAGGAGGUUGGAAAGCAGCAGCC 24 3300 myoC-3555 - GAAAAUGAGAAUCUGGCC 18 3301 myoC-3556 - AGAAAAUGAGAAUCUGGCC 19 3302 myoC-195 - AAGAAAAUGAGAAUCUGGCC 20 581 myoC-3557 - CAAGAAAAUGAGAAUCUGGCC 21 3303 myoC-3558 - GCAAGAAAAUGAGAAUCUGGCC 22 3304 myoC-3559 - GGCAAGAAAAUGAGAAUCUGGCC 23 3305 myoC-3560 - AGGCAAGAAAAUGAGAAUCUGGCC 24 3306 myoC-8428 - UCUAUAGGAAUGCUCUCC 18 8174 myoC-8429 - UUCUAUAGGAAUGCUCUCC 19 8175 myoC-2076 - CU UCUAUAGGAAUGCUCUCC 20 2206 myoC-8430 - GCUUCUAUAGGAAUGCUCUCC 21 8176 myoC-8431 - CGCUUCUAUAGGAAUGCUCUCC 22 8177 myoC-8432 - CCGCUUCUAUAGGAAUGCUCUCC 23 8178 myoC-8433 - GCCGCUUCUAUAGGAAUGCUCUCC 24 8179 myoC-8434 - CCUGCCUGCCCUUUCUCC 18 8180 myoC-8435 - CCCUGCCUGCCCUU UCUCC 19 8181 myoC-8436 - UCCCUGCCUGCCCU UUCUCC 20 8182 myoC-8437 - CUCCCUGCCUGCCCUUUCUCC 21 8183 myoC-8438 - CCUCCCUGCCUGCCCUU UCUCC 22 8184 myoC-8439 - GCCUCCCUGCCUGCCCU UUCUCC 23 8185 myoC-8440 - GGCCUCCCUGCCUGCCCUUUCUCC 24 8186 myoC-8441 - GCAAGUGUCUCUCCUUCC 18 8187 myoC-8442 - GGCAAGUGUCUCUCCUUCC 19 8188 myoC-1929 - GGGCAAGUGUCUCUCCU UCC 20 2105 myoC-8443 - UGGGCAAGUGUCUCUCCUUCC 21 8189 myoC-8444 - GUGGGCAAGUGUCUCUCCUUCC 22 8190 myoC-8445 - CGUGGGCAAGUGUCUCUCCUUCC 23 8191 myoC-8446 - CCGUGGGCAAGUGUCUCUCCUUCC 24 8192 myoC-8447 - ACACAGU UGUU UUAAAGC 18 8193 myoC-8448 - UACACAGU UGU UUUAAAGC 19 8194 myoC-2065 - AU ACACAGUUGUUUUAAAGC 20 2196 myoC-8449 - GAUACACAG U UG U U U UAAAGC 21 8195 myoC-8450 - AGAUACACAGU UGUU UUAAAGC 22 8196 myoC-8451 - AAGAU ACACAGUUGUU UUAAAGC 23 8197 myoC-8452 - AAAGAUACACAGUUG UUUUAAAGC 24 8198 myoC-8453 - GCAGUGACUGCUGACAGC 18 8199 myoC-8454 - AGCAGUGACUGCUGACAGC 19 8200 myoC-1976 - CAGCAGUGACUGCUGACAGC 20 2133 myoC-8455 - UCAGCAGUGACUGCUGACAGC 21 8201 myoC-8456 - CUCAGCAGUGACUGCUGACAGC 22 8202 myoC-8457 - GCUCAGCAGUGACUGCUGACAGC 23 8203 myoC-8458 - AGCUCAGCAGUGACUGCUGACAGC 24 8204 myoC-3579 - AGGUUGGAAAGCAGCAGC 18 3325 myoC-3580 - GAGGUUGGAAAGCAGCAGC 19 3326 myoC-1653 - GGAGGU UGGAAAGCAGCAGC 20 1917 myoC-3581 - AGGAGGUUGGAAAGCAGCAGC 21 3327 myoC-3582 - CAGGAGGUUGGAAAGCAGCAGC 22 3328 myoC-3583 - CCAGG AGGUUGGAAAGCAGCAGC 23 3329 myoC-3584 - GCCAGGAGGUUGGAAAGCAGCAGC 24 3330 myoC-8459 - AGGGGAAGGAGGCAGAGC 18 8205 myoC-8460 - GAGGGGAAGGAGGCAGAGC 19 8206 myoC-1045 - AG AGGGGAAGGAGGCAGAGC 20 1345 myoC-8461 - GAG AGGGGAAGGAGGCAGAGC 21 8207 myoC-8462 - UGAG AGGGGAAGGAGGCAGAGC 22 8208 myoC-8463 - UUGAG AGGGGAAGGAGGCAGAGC 23 8209 myoC-8464 - GUUGAGAGGGGAAGGAGGCAGAGC 24 8210 myoC-8465 - GAGGGAUAGUGUAUGAGC 18 8211 myoC-8466 - AGAGGGAUAGUGUAUGAGC 19 8212 myoC-1991 - GAGAGGGAUAGUGUAUGAGC 20 2142 myoC-8467 - AG AGAGGGAUAGUGUAUGAGC 21 8213 myoC-8468 - AAG AGAGGGAUAGUGUAUGAGC 22 8214 myoC-8469 - AAAG AGAGGGAUAGUGUAUGAGC 23 8215 myoC-8470 - AAAAGAGAGGGAUAGUGUAUGAGC 24 8216 myoC-8471 - CGGAGUGACCUGCAGCGC 18 8217 myoC-8472 - ACGGAGUGACCUGCAGCGC 19 8218 myoC-1118 - CACGGAGUGACCUGCAGCGC 20 1418 myoC-8473 - GCACGGAGUGACCUGCAGCGC 21 8219 myoC-8474 - AGCACGGAGUGACCUGCAGCGC 22 8220 myoC-8475 - CAGCACGGAGUGACCUGCAGCGC 23 8221 myoC-8476 - ACAGCACGGAGUGACCUGCAGCGC 24 8222 myoC-3585 - AGAAGAAGCGACUAAGGC 18 3331 myoC-3586 - GAGAAGAAGCGACUAAGGC 19 3332 myoC-1646 - AG AGAAGAAGCGACUAAGGC 20 1912 myoC-3587 - AAG AGAAGAAGCGACUAAGGC 21 3333 myoC-3588 - GAAG AGAAGAAGCGACUAAGGC 22 3334 myoC-3589 - GG AAG AGAAGAAGCGACUAAGGC 23 3335 myoC-3590 - AGGAAGAGAAGAAGCGACUAAGGC 24 3336 myoC-8477 - GGCAUUCAAAAACUGGGC 18 8223 myoC-8478 - UGGCAU UCAAAAACUGGGC 19 8224 myoC-1972 - CUGGCAUUCAAAAACUGGGC 20 2130 myoC-8479 - CCUGGCAU UCAAAAACUGGGC 21 8225 myoC-8480 - GCCUGGCAU UCAAAAACUGGGC 22 8226 myoC-8481 - UGCCUGGCAU UCAAAAACUGGGC 23 8227 myoC-8482 - UUGCCUGGCAUUCAAAAACUGGGC 24 8228 myoC-3609 - AGAAAAUGAGAAUCUGGC 18 3355 myoC-3610 - AAGAAAAUGAGAAUCUGGC 19 3356 myoC-1649 - CAAGAAAAUGAGAAUCUGGC 20 1915 myoC-3611 - GCAAGAAAAUGAGAAUCUGGC 21 3357 myoC-3612 - GGCAAGAAAAUGAGAAUCUGGC 22 3358 myoC-3613 - AGGCAAGAAAAUGAGAAUCUGGC 23 3359 myoC-3614 - AAGGCAAGAAAAUGAGAAUCUGGC 24 3360 myoC-8483 - AGAGCAAGUGGAAAAUGC 18 8229 myoC-8484 - CAGAGCAAGUGG A A A A U G C 19 8230 myoC-1975 - CCAGAGCAAGUGGAAAAUGC 20 2132 myoC-8485 - GCCAGAGCAAGUGG A A A A U G C 21 8231 myoC-8486 - GGCCAGAGCAAGUGGAAAAUGC 22 8232 myoC-8487 - GGGCCAGAGCAAGUGGAAAAUGC 23 8233 myoC-8488 - UGGGCCAGAGCAAGUG G A A A A U G C 24 8234 myoC-4878 - CCAGACCCGAGACACUGC 18 4624 myoC-4879 - CCCAGACCCGAGACACUGC 19 4625 myoC-1660 - CCCCAGACCCGAGACACUGC 20 1922 myoC-4880 - UCCCCAGACCCGAGACACUGC 21 4626 myoC-4881 - GUCCCCAGACCCGAGACACUGC 22 4627 myoC-4882 - UG UCCCCAGACCCGAGACACUGC 23 4628 myoC-4883 - GUGUCCCCAGACCCGAGACACUGC 24 4629 myoC-8489 - CUCUGGAGGUGAGUCUGC 18 8235 myoC-8490 - ACUCUGGAGGUGAGUCUGC 19 8236 myoC-2036 - CACUCUGGAGGUGAGUCUGC 20 2170 myoC-8491 - CCACUCUGGAGGUGAGUCUGC 21 8237 myoC-8492 - UCCACUCUGGAGGUGAG UCUGC 22 8238 myoC-8493 - CUCCACUCUGGAGGUGAGUCUGC 23 8239 myoC-8494 - UCUCCACUCUGGAGGUGAGUCUGC 24 8240 myoC-8495 - UAACAUUGACAUUGGUGC 18 8241 myoC-8496 - CUAACAUUGACAUUGGUGC 19 8242 myoC-2062 - GCUAACAUUGACAUUGGUGC 20 2193 myoC-8497 - GGCUAACAU UGACAUUGGUGC 21 8243 myoC-8498 - AGGCUAACAUUGACAUUGGUGC 22 8244 myoC-8499 - GAGGCUAACAUUGACAUUGGUGC 23 8245 myoC-8500 - AGAGGCUAACAUUGACAUUGGUGC 24 8246 myoC-8501 - G UCG AAAACCU UGGAAUC 18 8247 myoC-8502 - GGUCG AAAACCU UGGAAUC 19 8248 myoC-1026 - CGG UCG AAAACCU UGGAAUC 20 1326 myoC-8503 - ACGG UCG AAAACCU UGGAAUC 21 8249 myoC-8504 - GACGG UCG AAAACCU UGGAAUC 22 8250 myoC-8505 - AGACGG UCG AAAACCU UGGAAUC 23 8251 myoC-8506 - AAG ACG G U CG AAAACCU U G G A AU C 24 8252 myoC-8507 - AACUGUGUUUCUCCACUC 18 8253 myoC-8508 - AAACUGUG UUUCUCCACUC 19 8254 myoC-1156 - CAAACUGUGUUUCUCCACUC 20 1456 myoC-8509 - GCAAACUGUGUUUCUCCACUC 21 8255 myoC-8510 - AGCAAACUGUGUUUCUCCACUC 22 8256 myoC-8511 - GAGCAAACUGUGUUUCUCCACUC 23 8257 myoC-8512 - AGAGCAAACUGUGUU UCUCCACUC 24 8258 myoC-8513 - ACUGAUCACGUCAGACUC 18 8259 myoC-8514 - CACUGAUCACGUCAGACUC 19 8260 myoC-1963 - UCACUGAUCACGUCAGACUC 20 2122 myoC-8515 - CUCACUGAUCACGUCAGACUC 21 8261 myoC-8516 - CCUCACUGAUCACGUCAGACUC 22 8262 myoC-8517 - UCCUCACUGAUCACGUCAGACUC 23 8263 myoC-8518 - GUCCUCACUGAUCACGUCAGACUC 24 8264 myoC-8519 - UUACUAGUAAU UUAGCUC 18 8265 myoC-8520 - AUUACUAGUAAUUUAGCUC 19 8266 myoC-8521 - UAUUACUAGUAAUUUAGCUC 20 8267 myoC-8522 - GUAUUACUAGUAAUUUAGCUC 21 8268 myoC-8523 - AGUAUUACUAGUAAU UUAGCUC 22 8269 myoC-8524 - AAGUAUUACUAGUAAU UUAGCUC 23 8270 myoC-8525 - CAAGUAU UACUAGUAAUUUAGCUC 24 8271 myoC-4908 - GGCUGUGCCACCAGGCUC 18 4654 myoC-4909 - GGGCUGUGCCACCAGGCUC 19 4655 myoC-1661 - CGGGCUGUGCCACCAGGCUC 20 1923 myoC-4910 - UCGGGCUG UGCCACCAGGCUC 21 4656 myoC-4911 - CUCGGGCUGUGCCACCAGGCUC 22 4657 myoC-4912 - GCUCGGGCUGUGCCACCAGGCUC 23 4658 myoC-4913 - UGCUCGGGCUGUGCCACCAGGCUC 24 4659 myoC-8526 - AUCAGU UCAAGGGAAGUC 18 8272 myoC-8527 - A A U C AG U U C A AG G G A AG U C 19 8273 myoC-1144 - AAAUCAGUUCAAGGGAAGUC 20 1444 myoC-8528 - A A A A U C AG U U C A AG G G A AG U C 21 8274 myoC-8529 - AAAAAUCAGUUCAAGGGAAGUC 22 8275 myoC-8530 - A A A A A A U C AG U U C A AG G G A AG U C 23 8276 myoC-8531 - G AAAAAAU CAG U UCAAG GG AAG UC 24 8277 myoC-8532 - GAUUAUUAACCUACAGUC 18 8278 myoC-8533 - GGAUUAU UAACCUACAGUC 19 8279 myoC-2042 - GGGAUUAUUAACCUACAGUC 20 2174 myoC-8534 - AGGGAUUAUUAACCUACAGUC 21 8280 myoC-8535 - CAGGG AU U AU U AACCU ACAG UC 22 8281 myoC-8536 - GCAGGGAU UAUUAACCUACAGUC 23 8282 myoC-8537 - AGCAGGGAUUAUUAACCUACAGUC 24 8283 myoC-8538 - AG A A AG ACAGAUUCAUUC 18 8284 myoC-8539 - AAGAAAGACAGAUUCAUUC 19 8285 myoC-1992 - C A AG A A AG ACAGAUUCAUUC 20 2143 myoC-8540 - GCAAGAAAGACAGAUUCAUUC 21 8286 myoC-8541 - AGCAAGAAAGACAGAUUCAUUC 22 8287 myoC-8542 - GAGCAAGAAAGACAGAUUCAUUC 23 8288 myoC-8543 - UGAGCAAGAAAGACAGAUUCAUUC 24 8289 myoC-8544 - CGAGAGCCACAAUGCUUC 18 8290 myoC-8545 - CCG AG AGCCACAAUGCU UC 19 8291 myoC-1061 - ACCGAGAGCCACAAUGCUUC 20 1361 myoC-8546 - G ACCG AG AGCCACAAUGCU UC 21 8292 myoC-8547 - GGACCG AG AGCCACAAUGCU UC 22 8293 myoC-8548 - AGG ACCGAGAGCCACAAUGCUUC 23 8294 myoC-8549 - CAGG ACCGAGAGCCACAAUGCUUC 24 8295 myoC-8550 - GGGGGAAAAAAUCAGU UC 18 8296 myoC-8551 - GGGGGGAAAAAAUCAGUUC 19 8297 myoC-2008 - UGGGGGGAAAAAAUCAGUUC 20 2150 myoC-8552 - GUGGGGGGAAAAAAUCAGUUC 21 8298 myoC-8553 - UGUGGGGGGAAAAAAUCAGU UC 22 8299 myoC-8554 - UUG UGGGGGGAAAAAAUCAG UUC 23 8300 myoC-8555 - AUUGUGGGGGGAAAAAAUCAGUUC 24 8301 myoC-8556 - CCACGUGAUCCUGGGU UC 18 8302 myoC-8557 - UCCACGUGAUCCUGGGU UC 19 8303 myoC-1999 - GUCCACGUGAUCCUGGGUUC 20 2147 myoC-8558 - AGUCCACGUGAUCCUGGGUUC 21 8304 myoC-8559 - UAGUCCACGUGAUCCUGGGUUC 22 8305 myoC-8560 - AUAGUCCACGUGAUCCUGGGUUC 23 8306 myoC-8561 - UAUAGUCCACGUGAUCCUGGGU UC 24 8307 myoC-8562 - CACAG UCCAU AGCAAAAG 18 8308 myoC-8563 - UCACAGUCCAUAGCAAAAG 19 8309 myoC-8564 - U U CACAG U CCA U AG C A A A AG 20 8310 myoC-8565 - UU UCACAGUCCAUAGCAAAAG 21 8311 myoC-8566 - UUU UCACAGUCCAUAG C A A A AG 22 8312 myoC-8567 - G U U U U CACAG U CCAU AG CA AAAG 23 8313 myoC-8568 - AG U U U U CACAG U CCAU AG CAA AAG 24 8314 myoC-8569 - GGGU UUAUUAAUGUAAAG 18 8315 myoC-8570 - UGGGU UUAUUAAUGUAAAG 19 8316 myoC-2040 - UUGGGUUUAUUAAUGUAAAG 20 2173 myoC-8571 - UUUGGGUUUAUUAAUGUAAAG 21 8317 myoC-8572 - CUU UGGGUU UAUUAAUGUAAAG 22 8318 myoC-8573 - UCU UUGGGU UUAUUAAUGUAAAG 23 8319 myoC-8574 - CUCUUUGGGUUUAUUAAUGUAAAG 24 8320 myoC-8575 - AAACUGGGCCAGAGCAAG 18 8321 myoC-8576 - AAAACUGGGCCAGAGCAAG 19 8322 myoC-1068 - A A A A AC U G G G CC AG AG C A AG 20 1368 myoC-8577 - CA A A A AC U G G G CC AG AG CA AG 21 8323 myoC-8578 - UCAAAAACUGGGCCAGAGCAAG 22 8324 myoC-8579 - U UCAAAAACUGGGCCAG AGCAAG 23 8325 myoC-8580 - A U U C A A A A AC U G G G CC AG AG C A AG 24 8326 myoC-8581 - AAAUCAGU UCAAGGGAAG 18 8327 myoC-8582 - A A A A U C AG U U C A AG G G A AG 19 8328 myoC-2011 - A A A A A UCAGUUCAAGGGAAG 20 2151 myoC-8583 - AAAAAAUCAGUU C A AG G G A AG 21 8329 myoC-8584 - G A AAAA AU CAG U U CAAG G G A AG 22 8330 myoC-8585 - G G A A A A A A UCAGUUCAAGGGAAG 23 8331 myoC-8586 - GGGAAAAAAUCAGUUCAAGGGAAG 24 8332 myoC-8587 - GGAGCAGCUGAGCCACAG 18 8333 myoC-8588 - UGGAGCAGCUGAGCCACAG 19 8334 myoC-1048 - CUGGAGCAGCUGAGCCACAG 20 1348 myoC-8589 - GCUGGAGCAGCUGAGCCACAG 21 8335 myoC-8590 - AGCUGGAGCAGCUGAGCCACAG 22 8336 myoC-8591 - GAGCUGGAGCAGCUGAGCCACAG 23 8337 myoC-8592 - AG AGCUGGAGCAGCUGAGCCACAG 24 8338 myoC-8593 - GAGGCAGAGCUGGAGCAG 18 8339 myoC-8594 - GGAGGCAGAGCUGGAGCAG 19 8340 myoC-1948 - AGGAGGCAGAGCUGGAGCAG 20 2115 myoC-8595 - AAGGAGGCAGAGCUGGAGCAG 21 8341 myoC-8596 - GAAGGAGGCAGAGCUGGAGCAG 22 8342 myoC-8597 - GG AAGGAGGCAGAGCUGGAGCAG 23 8343 myoC-8598 - GGGAAGGAGGCAGAGCUGGAGCAG 24 8344 myoC-8599 - GUGUCUGCAUAUGAGCAG 18 8345 myoC-8600 - UGUGUCUGCAUAUGAGCAG 19 8346 myoC-8601 - AUGUGUCUGCAUAUGAGCAG 20 8347 myoC-8602 - GAUGUGUCUGCAUAUGAGCAG 21 8348 myoC-8603 - AG AUGUGUCUGCAUAUGAGCAG 22 8349 myoC-8604 - GAG AUGUGUCUGCAUAUGAGCAG 23 8350 myoC-8605 - UGAGAUGUGUCUGCAUAUGAGCAG 24 8351 myoC-8606 - GAGUGACCUGCAGCGCAG 18 8352 myoC-8607 - GGAGUGACCUGCAGCGCAG 19 8353 myoC-1120 - CGGAG UG ACCUGCAGCGCAG 20 1420 myoC-8608 - ACGGAGUGACCUGCAGCGCAG 21 8354 myoC-8609 - CACGG AG UG ACCUGCAGCGCAG 22 8355 myoC-8610 - GCACGG AG UG ACCUGCAGCGCAG 23 8356 myoC-8611 - AGCACGGAGUGACCUGCAGCGCAG 24 8357 myoC-8612 - AGAUUCAUUCAAGGGCAG 18 8358 myoC-8613 - CAG AU UCAU UCAAGGGCAG 19 8359 myoC-1126 - ACAGAUUCAUUCAAGGGCAG 20 1426 myoC-8614 - GACAGAUUCAUUCAAGGGCAG 21 8360 myoC-8615 - AGACAGAUUCAUUCAAGGGCAG 22 8361 myoC-8616 - AAGACAGAUUCAUUCAAGGGCAG 23 8362 myoC-8617 - AAAGACAGAUUCAUUCAAGGGCAG 24 8363 myoC-8618 - GAGGGGAAGGAGGCAGAG 18 8364 myoC-8619 - AGAGGGGAAGGAGGCAGAG 19 8365 myoC-1946 - GAGAGGGGAAGGAGGCAGAG 20 2114 myoC-8620 - UGAGAGGGGAAGGAGGCAGAG 21 8366 myoC-8621 - UUGAGAGGGGAAGGAGGCAGAG 22 8367 myoC-8622 - GU UGAGAGGGGAAGGAGGCAGAG 23 8368 myoC-8623 - UGUUGAGAGGGGAAGGAGGCAGAG 24 8369 myoC-4980 - GAAGGUAAGAAUGCAGAG 18 4726 myoC-4981 - AGAAGGUAAGAAUGCAGAG 19 4727 myoC-3185 - GAGAAGGUAAGAAUGCAGAG 20 2931 myoC-4982 - AG AGAAGGUAAGAAUGCAGAG 21 4728 myoC-4983 - CAGAGAAGGUAAGAAUGCAGAG 22 4729 myoC-4984 - CCAG AGAAGGUAAGAAUGCAGAG 23 4730 myoC-4985 - UCCAG AGAAGGUAAGAAUGCAGAG 24 4731 myoC-8624 - GAGGGGGGAUGUUGAGAG 18 8370 myoC-8625 - UGAGGGGGGAUGUUGAGAG 19 8371 myoC-1042 - GUGAGGGGGGAUGUUGAGAG 20 1342 myoC-8626 - UG UGAGGGGGGAUGUUGAGAG 21 8372 myoC-8627 - CUG UGAGGGGGGAUGU UGAGAG 22 8373 myoC-8628 - UCUGUGAGGGGGGAUGU UGAGAG 23 8374 myoC-8629 - CUCUG UGAGGGGGGAUGUUGAGAG 24 8375 myoC-8630 - UGCAGCGCAGGGGAGGAG 18 8376 myoC-8631 - CUGCAGCGCAGGGGAGGAG 19 8377 myoC-1985 - CCUGCAGCGCAGGGGAGGAG 20 2137 myoC-8632 - ACCUGCAGCGCAGGGGAGGAG 21 8378 myoC-8633 - GACCUGCAGCGCAGGGGAGGAG 22 8379 myoC-8634 - UG ACCUGCAGCGCAGGGGAGGAG 23 8380 myoC-8635 - GUGACCUGCAGCGCAGGGGAGGAG 24 8381 myoC-8636 - AGCUGAGCCACAGGGGAG 18 8382 myoC-8637 - CAGCUGAGCCACAGGGGAG 19 8383 myoC-1953 - GCAGCUGAGCCACAGGGGAG 20 2117 myoC-8638 - AGCAGCUGAGCCACAGGGGAG 21 8384 myoC-8639 - GAGCAGCUGAGCCACAGGGGAG 22 8385 myoC-8640 - GGAGCAGCUGAGCCACAGGGGAG 23 8386 myoC-8641 - UGGAGCAGCUGAGCCACAGGGGAG 24 8387 myoC-8642 - ACCUGCAGCGCAGGGGAG 18 8388 myoC-8643 - GACCUGCAGCGCAGGGGAG 19 8389 myoC-1984 - UG ACCUGCAGCGCAGGGGAG 20 2136 myoC-8644 - GUG ACCUGCAGCGCAGGGGAG 21 8390 myoC-8645 - AG UG ACCUGCAGCGCAGGGGAG 22 8391 myoC-8646 - GAG UG ACCUGCAGCGCAGGGGAG 23 8392 myoC-8647 - GGAGUGACCUGCAGCGCAGGGGAG 24 8393 myoC-8648 - GCCACAGGGGAGGUGGAG 18 8394 myoC-8649 - AGCCACAGGGGAGGUGGAG 19 8395 myoC-1053 - GAGCCACAGGGGAGGUGGAG 20 1353 myoC-8650 - UG AGCCACAGGGGAGGUGGAG 21 8396 myoC-8651 - CUGAGCCACAGGGGAGGUGGAG 22 8397 myoC-8652 - GCUG AGCCACAGGGGAGGUGGAG 23 8398 myoC-8653 - AGCUGAGCCACAGGGGAGGUGGAG 24 8399 myoC-5004 - GGAGGUAGCAAGGCUGAG 18 4750 myoC-5005 - AGGAGGUAGCAAGGCUGAG 19 4751 myoC-1657 - CAGGAGGUAGCAAGGCUGAG 20 1920 myoC-5006 - CCAGGAGGUAGCAAGGCUGAG 21 4752 myoC-5007 - GCCAGGAGGUAGCAAGGCUGAG 22 4753 myoC-5008 - AGCCAGGAGGUAGCAAGGCUGAG 23 4754 myoC-5009 - CAGCCAGGAGGUAGCAAGGCUGAG 24 4755 myoC-8654 - UU UAAAGCUAGGGGUGAG 18 8400 myoC-8655 - UUU UAAAGCUAGGGGUGAG 19 8401 myoC-2071 - GU UUUAAAGCUAGGGGUGAG 20 2202 myoC-8656 - UGUUUUAAAGCUAGGGGUGAG 21 8402 myoC-8657 - UUGUUUUAAAGCUAGGGGUGAG 22 8403 myoC-8658 - GUUGUUUUAAAGCUAGGGGUGAG 23 8404 myoC-8659 - AGUUGUUU UAAAGCUAGGGGUGAG 24 8405 myoC-8660 - CCUGUGAU UCUCUGUGAG 18 8406 myoC-8661 - CCCUGUGAUUCUCUGUGAG 19 8407 myoC-1037 - UCCCUG UGAUUCUCUGUGAG 20 1337 myoC-8662 - UUCCCUGUGAUUCUCUGUGAG 21 8408 myoC-8663 - CU UCCCUGUGAUUCUCUGUGAG 22 8409 myoC-8664 - ACUUCCCUGUGAUUCUCUGUGAG 23 8410 myoC-8665 - CACUUCCCUGUGAUUCUCUGUGAG 24 8411 myoC-8666 - GUGAGGGGGGAUGU UGAG 18 8412 myoC-8667 - UGUGAGGGGGGAUGU UGAG 19 8413 myoC-1040 - CUGUGAGGGGGGAUGU UGAG 20 1340 myoC-8668 - UCUGUGAGGGGGGAUGUUGAG 21 8414 myoC-8669 - CUCUGUGAGGGGGGAUGU UGAG 22 8415 myoC-8670 - UCUCUGUGAGGGGGGAUGUUGAG 23 8416 myoC-8671 - UUCUCUGUGAGGGGGGAUGUUGAG 24 8417 myoC-8672 - ACGGAGUGACCUGCAGCG 18 8418 myoC-8673 - CACGGAGUGACCUGCAGCG 19 8419 myoC-1978 - GCACGGAGUGACCUGCAGCG 20 2134 myoC-8674 - AGCACGGAGUGACCUGCAGCG 21 8420 myoC-8675 - CAGCACGGAGUGACCUGCAGCG 22 8421 myoC-8676 - ACAGCACGGAGUGACCUGCAGCG 23 8422 myoC-8677 - GACAGCACGGAGUGACCUGCAGCG 24 8423 myoC-5048 - AGCCAGGAGGUAGCAAGG 18 4794 myoC-5049 - CAGCCAGGAGGUAGCAAGG 19 4795 myoC-1655 - GCAGCCAGGAGGUAG C A AG G 20 1918 myoC-5050 - AGCAGCCAGGAGGUAGCAAGG 21 4796 myoC-5051 - C AG C AG CC AG G AG G U AG C A AG G 22 4797 myoC-5052 - GCAGCAGCCAGGAGGUAG C A AG G 23 4798 myoC-5053 - AGCAGCAGCCAGGAGGUAGCAAGG 24 4799 myoC-8678 - CCCGU U UCUUU UAACAGG 18 8424 myoC-8679 - UCCCGU UUCUU UUAACAGG 19 8425 myoC-2024 - AU CCCG U U U CU U U U AACAGG 20 2159 myoC-8680 - AAUCCCGUU UCUUU UAACAGG 21 8426 myoC-8681 - CAAUCCCGUUUCUU UUAACAGG 22 8427 myoC-8682 - G C A A UCCCG UUUCU UUUAACAGG 23 8428 myoC-8683 - GGCAAUCCCGUUUCU UUUAACAGG 24 8429 myoC-8684 - GGGGGACAGGAAGGCAGG 18 8430 myoC-8685 - AGGGGGACAGGAAGGCAGG 19 8431 myoC-1961 - GAGGGGGACAGGAAGGCAGG 20 2120 myoC-8686 - GG AGGGGGACAGGAAGGCAGG 21 8432 myoC-8687 - UGG AGGGGGACAGGAAGGCAGG 22 8433 myoC-8688 - GUGGAGGGGGACAGGAAGGCAGG 23 8434 myoC-8689 - GGUGGAGGGGGACAGGAAGGCAGG 24 8435 myoC-8690 - GUUGAGAGGGGAAGGAGG 18 8436 myoC-8691 - UGUUGAGAGGGGAAGGAGG 19 8437 myoC-1945 - AUGUUGAGAGGGGAAGGAGG 20 2113 myoC-8692 - GAUGU UGAGAGGGGAAGGAGG 21 8438 myoC-8693 - GG AUGU UGAGAGGGGAAGGAGG 22 8439 myoC-8694 - GGG AUG UUGAGAGGGGAAGGAGG 23 8440 myoC-8695 - GGGGAUGUUGAGAGGGGAAGGAGG 24 8441 myoC-3687 - GAGAAUCUGGCCAGGAGG 18 3433 myoC-3688 - UGAGAAUCUGGCCAGGAGG 19 3434 myoC-1651 - AUGAGAAUCUGGCCAGGAGG 20 1916 myoC-3689 - AAUGAGAAUCUGGCCAGGAGG 21 3435 myoC-3690 - AAAUGAGAAUCUGGCCAGGAGG 22 3436 myoC-3691 - AAAAUGAGAAUCUGGCCAGGAGG 23 3437 myoC-3692 - GAAAAUGAGAAUCUGGCCAGGAGG 24 3438 myoC-8696 - AUCCUGGGUUCUAGGAGG 18 8442 myoC-8697 - GAUCCUGGGUUCUAGGAGG 19 8443 myoC-2001 - UGAUCCUGGGUUCUAGGAGG 20 2148 myoC-8698 - GUG AUCCUGGGUUCUAGGAGG 21 8444 myoC-8699 - CG UGAUCCUGGGUUCUAGGAGG 22 8445 myoC-8700 - ACG UGAUCCUGGGUUCUAGGAGG 23 8446 myoC-8701 - CACGUGAUCCUGGGU UCUAGGAGG 24 8447 myoC-8702 - GCUGAGCCACAGGGGAGG 18 8448 myoC-8703 - AGCUGAGCCACAGGGGAGG 19 8449 myoC-1050 - CAGCUGAGCCACAGGGGAGG 20 1350 myoC-8704 - GCAGCUGAGCCACAGGGGAGG 21 8450 myoC-8705 - AGCAGCUGAGCCACAGGGGAGG 22 8451 myoC-8706 - GAGCAGCUGAGCCACAGGGGAGG 23 8452 myoC-8707 - GGAGCAGCUGAGCCACAGGGGAGG 24 8453 myoC-8708 - UUAAAGCUAGGGGUGAGG 18 8454 myoC-8709 - UUUAAAGCUAGGGGUGAGG 19 8455 myoC-2072 - UUU UAAAGCUAGGGGUGAGG 20 2203 myoC-8710 - GUUU UAAAGCUAGGGGUGAGG 21 8456 myoC-8711 - UGUU UUAAAGCUAGGGGUGAGG 22 8457 myoC-8712 - U UGUU UUAAAGCUAGGGGUGAGG 23 8458 myoC-8713 - GU UGUUUUAAAGCUAGGGGUGAGG 24 8459 myoC-8714 - UUGGCUUAUGCAAGACGG 18 8460 myoC-8715 - CU UGGCUUAUGCAAGACGG 19 8461 myoC-1923 - ACU UGGCUUAUGCAAGACGG 20 2101 myoC-8716 - GACU UGGCUUAUGCAAGACGG 21 8462 myoC-8717 - GGACUUGGCUUAUGCAAGACGG 22 8463 myoC-8718 - UGGACUUGGCUUAUGCAAGACGG 23 8464 myoC-8719 - GUGGACUUGGCUUAUGCAAGACGG 24 8465 myoC-8720 - GAGAAAUAAAAGGACCGG 18 8466 myoC-8721 - GGAGAAAUAAAAGGACCGG 19 8467 myoC-8722 - AGGAGAAAUAAAAGGACCGG 20 8468 myoC-8723 - AAGGAGAAAUAAAAGGACCGG 21 8469 myoC-8724 - A A AG GAG AAA U A A A AG G ACCG G 22 8470 myoC-8725 - AAAAGGAGAAAUAAAAGGACCGG 23 8471 myoC-8726 - C A A A AG GAG AAA U A A A AG G ACCG G 24 8472 myoC-8727 - GUGACCUGCAGCGCAGGG 18 8473 myoC-8728 - AG UG ACCUGCAGCGCAGGG 19 8474 myoC-1982 - GAGUGACCUGCAGCGCAGGG 20 2135 myoC-8729 - GGAGUG ACCUGCAGCGCAGGG 21 8475 myoC-8730 - CGG AG UG ACCUGCAGCGCAGGG 22 8476 myoC-8731 - ACGGAGUGACCUGCAGCGCAGGG 23 8477 myoC-8732 - CACGG AG UG ACCUGCAGCGCAGGG 24 8478 myoC-8733 - UAAAGCUAGGGGUGAGGG 18 8479 myoC-8734 - UUAAAGCUAGGGGUGAGGG 19 8480 myoC-2073 - UUUAAAGCUAGGGGUGAGGG 20 2204 myoC-8735 - UU UUAAAGCUAGGGGUGAGGG 21 8481 myoC-8736 - GUUU UAAAGCUAGGGGUGAGGG 22 8482 myoC-8737 - UGUUU UAAAGCUAGGGGUGAGGG 23 8483 myoC-8738 - UUGUU UUAAAGCUAGGGGUGAGGG 24 8484 myoC-8739 - GUUGUUUUAAAGCUAGGG 18 8485 myoC-8740 - AGUUGUUUUAAAGCUAGGG 19 8486 myoC-2067 - CAGU UGUUUUAAAGCUAGGG 20 2198 myoC-8741 - ACAGUUGUUUUAAAGCUAGGG 21 8487 myoC-8742 - CACAGUUGUUU UAAAGCUAGGG 22 8488 myoC-8743 - ACA CAGUUGUUUUAAAGCUAGGG 23 8489 myoC-8744 - UACACAGUUGUUU UAAAGCUAGGG 24 8490 myoC-8745 - UGACCUGCAGCGCAGGGG 18 8491 myoC-8746 - GUGACCUGCAGCGCAGGGG 19 8492 myoC-1121 - AG UGACCUGCAGCGCAGGGG 20 1421 myoC-8747 - GAG UGACCUGCAGCGCAGGGG 21 8493 myoC-8748 - GGAGUGACCUGCAGCGCAGGGG 22 8494 myoC-8749 - CGGAG UG ACCUGCAGCGCAGGGG 23 8495 myoC-8750 - ACGGAGUGACCUGCAGCGCAGGGG 24 8496 myoC-8751 - GGGGGAUGU UGAGAGGGG 18 8497 myoC-8752 - GGGGGGAUGUUGAGAGGGG 19 8498 myoC-1943 - AGGGGGGAUGUUGAGAGGGG 20 2112 myoC-8753 - GAGGGGGGAUGUUGAGAGGGG 21 8499 myoC-8754 - UGAGGGGGGAUGUUGAGAGGGG 22 8500 myoC-8755 - GUG AGGGGGGAUGU UGAGAGGGG 23 8501 myoC-8756 - UGUGAGGGGGGAUGU UGAGAGGGG 24 8502 myoC-8757 - GCAGGGCUAUAUUGUGGG 18 8503 myoC-8758 - GGCAGGGCUAUAUUGUGGG 19 8504 myoC-1140 - AGGCAGGGCUAUAUUGUGGG 20 1440 myoC-8759 - GAGGCAGGGCUAUAUUGUGGG 21 8505 myoC-8760 - GG AGGCAGGGCUAUAU UGUGGG 22 8506 myoC-8761 - AGGAGGCAGGGCUAUAUUGUGGG 23 8507 myoC-8762 - UAGGAGGCAGGGCUAUAUUGUGGG 24 8508 myoC-5103 - GGUAAGAAUGCAGAGUGG 18 4849 myoC-5104 - AGGUAAGAAUGCAGAGUGG 19 4850 myoC-3188 - AAGGUAAGAAUGCAGAG UGG 20 2934 myoC-5105 - GAAGGUAAGAAUGCAGAGUGG 21 4851 myoC-5106 - AGAAGGUAAGAAUGCAGAGUGG 22 4852 myoC-5107 - GAGAAGGUAAGAAUGCAGAGUGG 23 4853 myoC-5108 - AGAGAAGGUAAGAAUGCAGAGUGG 24 4854 myoC-8763 - GAGCCACAGGGGAGGUGG 18 8509 myoC-8764 - UGAGCCACAGGGGAGGUGG 19 8510 myoC-1051 - CUGAGCCACAGGGGAGGUGG 20 1351 myoC-8765 - GCUGAGCCACAGGGGAGGUGG 21 8511 myoC-8766 - AGCU GAGCCACAGGGGAGGUGG 22 8512 myoC-8767 - CAGCUGAGCCACAGGGGAGGUGG 23 8513 myoC-8768 - GCAGCUGAGCCACAGGGGAGGUGG 24 8514 myoC-8769 - GGCAGGGCUAUAUUG UGG 18 8515 myoC-8770 - AGGCAGGGCUAUAUUGUGG 19 8516 myoC-1139 - GAGGCAGGGCUAUAUUGUGG 20 1439 myoC-8771 - GGAGGCAGGGCUAUAUUGUGG 21 8517 myoC-8772 - AGGAGGCAGGGCUAUAUUGUGG 22 8518 myoC-8773 - UAGG AGGCAGGGCUAUAUUGUGG 23 8519 myoC-8774 - CUAGGAGGCAGGGCUAUAUUGUGG 24 8520 myoC-8775 - CAAUAACCAAAAAGAAUG 18 8521 myoC-8776 - CCA A U A ACC A A AA AG A A U G 19 8522 myoC-1970 - G CCA A U A ACC A A AA AG A A U G 20 2128 myoC-8777 - U G CC A A U A ACC A A A A AG A A U G 21 8523 myoC-8778 - UUGCCAAUAACCAAAAAGAAUG 22 8524 myoC-8779 - UUUGCCAAU A ACC A A A A AG A A U G 23 8525 myoC-8780 - A U U U G CCA A U A ACC A A A A AG A A U G 24 8526 myoC-8781 - AGCCUGUGAAUUUGAAUG 18 8527 myoC-8782 - AAGCCUGUGAAUUUGAAUG 19 8528 myoC-1170 - AAAGCCUGUGAAUUUGAAUG 20 1470 myoC-8783 - GAAAGCCUGUGAAUUUGAAUG 21 8529 myoC-8784 - AGAAAGCCUGUGAAUU UGAAUG 22 8530 myoC-8785 - CAGAAAGCCUGUGAAUUUGAAUG 23 8531 myoC-8786 - CCAGAAAGCCUGUGAAU UUGAAUG 24 8532 myoC-8787 - UCUCUGUGAGGGGGGAUG 18 8533 myoC-8788 - UUCUCUGUGAGGGGGGAUG 19 8534 myoC-1937 - AU UCUCUGUGAGGGGGGAUG 20 2109 myoC-8789 - GAU UCUCUG UGAGGGGGGAUG 21 8535 myoC-8790 - UGAU UCUCUGUGAGGGGGGAUG 22 8536 myoC-8791 - GUGAU UCUCUGUGAGGGGGGAUG 23 8537 myoC-8792 - UG UGAUUCUCUGUGAGGGGGGAUG 24 8538 myoC-8793 - CAAGUUCAGGCU UAACUG 18 8539 myoC-8794 - UCAAGUUCAGGCU UAACUG 19 8540 myoC-2029 - CUCAAGU UCAGGCUUAACUG 20 2164 myoC-8795 - UCUCAAGUUCAGGCUUAACUG 21 8541 myoC-8796 - GUCUCAAGUUCAGGCUUAACUG 22 8542 myoC-8797 - UGUCUCAAGUUCAGGCUUAACUG 23 8543 myoC-8798 - AUGUCUCAAGUUCAGGCUUAACUG 24 8544 myoC-5146 - AGGUAAGAAUGCAGAGUG 18 4892 myoC-5147 - AAGGUAAGAAUGCAGAGUG 19 4893 myoC-3189 - GAAGGUAAGAAUGCAGAGUG 20 2935 myoC-5148 - AG AAGGUAAGAAUGCAGAGUG 21 4894 myoC-5149 - GAG AAGGUAAGAAUGCAGAGUG 22 4895 myoC-5150 - AG AG AAGGUAAGAAUGCAGAGUG 23 4896 myoC-5151 - CAGAGAAGGUAAGAAUGCAGAGUG 24 4897 myoC-8799 - UGAGCCACAGGGG AGG UG 18 8545 myoC-8800 - CUGAGCCACAGGGGAGGUG 19 8546 myoC-1955 - GCUGAGCCACAGGGGAGGUG 20 2118 myoC-8801 - AGCUGAGCCACAGGGGAGGUG 21 8547 myoC-8802 - CAGCUGAGCCACAGGGGAGGUG 22 8548 myoC-8803 - GCAGCUGAGCCACAGGGGAGGUG 23 8549 myoC-8804 - AGCAGCUGAGCCACAGGGGAGGUG 24 8550 myoC-8805 - GU UUUAAAGCUAGGGGUG 18 8551 myoC-8806 - UGUUUUAAAGCUAGGGGUG 19 8552 myoC-2069 - UUGUUUUAAAGCUAGGGGUG 20 2200 myoC-8807 - GUUGUU UUAAAGCUAGGGGUG 21 8553 myoC-8808 - AGUUGUUUUAAAGCUAGGGGUG 22 8554 myoC-8809 - CAGU UGUUU UAAAGCUAGGGGUG 23 8555 myoC-8810 - ACAGU UGUUUUAAAGCUAGGGGUG 24 8556 myoC-8811 - CAACU ACUCAGCCCUG UG 18 8557 myoC-8812 - GCAACUACUCAGCCCUGUG 19 8558 myoC-1922 - GGCAACUACUCAGCCCUGUG 20 2100 myoC-8813 - GGGCAACUACUCAGCCCUGUG 21 8559 myoC-8814 - UGGGCAACUACUCAGCCCUGUG 22 8560 myoC-8815 - CUGGGCAACUACUCAGCCCUGUG 23 8561 myoC-8816 - UCUGGGCAACUACUCAGCCCUGUG 24 8562 myoC-8817 - UCCCUGUGAUUCUCUGUG 18 8563 myoC-8818 - UUCCCUGUGAUUCUCUGUG 19 8564 myoC-1035 - CUUCCCUGUGAUUCUCUGUG 20 1335 myoC-8819 - ACU UCCCUGUGAUUCUCUGUG 21 8565 myoC-8820 - CACUUCCCUG UGAUUCUCUGUG 22 8566 myoC-8821 - ACACUUCCCUGUGAUUCUCUGUG 23 8567 myoC-8822 - AACACU UCCCUGUGAUUCUCUGUG 24 8568 myoC-8823 - AGGCAGGGCUAUAUUGUG 18 8569 myoC-8824 - GAGGCAGGGCUAUAUUGUG 19 8570 myoC-1138 - GGAGGCAGGGCUAUAUUGUG 20 1438 myoC-8825 - AGGAGGCAGGGCUAUAUUGUG 21 8571 myoC-8826 - UAGG AGGCAGGGCUAUAUUGUG 22 8572 myoC-8827 - CUAGGAGGCAGGGCUAUAUUGUG 23 8573 myoC-8828 - UCUAGGAGGCAGGGCUAUAUUGUG 24 8574 myoC-8829 - GGAGGCAGGGCUAUAUUG 18 8575 myoC-8830 - AGGAGGCAGGGCUAUAUUG 19 8576 myoC-1136 - UAGGAGGCAGGGCUAUAU UG 20 1436 myoC-8831 - CU AGGAGGCAGGGCUAUAUUG 21 8577 myoC-8832 - UCU AGGAGGCAGGGCUAUAUUG 22 8578 myoC-8833 - UUCU AGGAGGCAGGGCUAUAUUG 23 8579 myoC-8834 - GU UCUAGGAGGCAGGGCUAUAUUG 24 8580 myoC-8835 - GAGAUGCAAGACUGAAAU 18 8581 myoC-8836 - UGAGAUGCAAGACUGAAAU 19 8582 myoC-2064 - CUGAGAUGCAAGACUGAAAU 20 2195 myoC-8837 - CCUGAGAUGCAAGACUGAAAU 21 8583 myoC-8838 - GCCUGAGAUGCAAGACUGAAAU 22 8584 myoC-8839 - UGCCUGAGAUGCAAGACUGAAAU 23 8585 myoC-8840 - GUGCCUGAGAUGCAAGACUGAAAU 24 8586 myoC-8841 - GGUCGAAAACCUUGGAAU 18 8587 myoC-8842 - CGGUCGAAAACCUUGGAAU 19 8588 myoC-1926 - ACGG UCG AAAACCU UGG AAU 20 2103 myoC-8843 - GACGGUCGAAAACCUUGGAAU 21 8589 myoC-8844 - AG ACGG UCG AAAACCU UGGAAU 22 8590 myoC-8845 - AAGACGG UCG AAAACCU UGG AAU 23 8591 myoC-8846 - CAAGACG G U CG A AAACC U U G G A AU 24 8592 myoC-8847 - AAGCCUGUGAAUUUGAAU 18 8593 myoC-8848 - AAAGCCUGUGAAUUUGAAU 19 8594 myoC-2046 - GAAAGCCUGUGAAUUUGAAU 20 2178 myoC-8849 - AGAAAGCCUGUGAAUU UGAAU 21 8595 myoC-8850 - CAG AAAGCCUGUGAAUUUGAAU 22 8596 myoC-8851 - CCAGAAAGCCUGUGAAUU UGAAU 23 8597 myoC-8852 - UCCAG AAAGCCUGUGAAUU UGAAU 24 8598 myoC-8853 - GGUGAGAUGUGUCUGCAU 18 8599 myoC-8854 - GGGUGAGAUGUGUCUGCAU 19 8600 myoC-8855 - CGGGUGAGAUGUGUCUGCAU 20 8601 myoC-8856 - CCGGGUGAGAUGUGUCUGCAU 21 8602 myoC-8857 - ACCGGGUGAGAUGUGUCUGCAU 22 8603 myoC-8858 - GACCGGGUGAGAUGUG UCUGCAU 23 8604 myoC-8859 - GGACCGGGUGAGAUGUGUCUGCAU 24 8605 myoC-8860 - AAUCUAUAU UUUAUAUAU 18 8606 myoC-8861 - UAAUCUAUAUUUUAUAUAU 19 8607 myoC-2054 - GUAAUCUAUAUUUUAUAUAU 20 2185 myoC-8862 - UGUAAUCUAUAUUUUAUAUAU 21 8608 myoC-8863 - U UGUAAUCUAUAUUUUAUAUAU 22 8609 myoC-8864 - UUUGUAAUCUAUAUUU UAUAUAU 23 8610 myoC-8865 - CUU UGUAAUCUAUAUU UUAUAUAU 24 8611 myoC-8866 - UACUUAGUUUCUCCUUAU 18 8612 myoC-8867 - UUACUUAGUUUCUCCU UAU 19 8613 myoC-2017 - AU UACUUAGUUUCUCCUUAU 20 2155 myoC-8868 - GAUUACUUAGUUUCUCCUUAU 21 8614 myoC-8869 - AGAUUACUUAGUUUCUCCU UAU 22 8615 myoC-8870 - AAGAUUACU UAGUUUCUCCUUAU 23 8616 myoC-8871 - UAAGAUUACUUAGUUUCUCCUUAU 24 8617 myoC-8872 - AAACUGUGUU UCUCCACU 18 8618 myoC-8873 - CAAACUGUGUUUCUCCACU 19 8619 myoC-2033 - GCAAACUGUGUUUCUCCACU 20 2168 myoC-8874 - AGCAAACUGUGUUUCUCCACU 21 8620 myoC-8875 - GAGCAAACUGUGUUUCUCCACU 22 8621 myoC-8876 - AGAGCAAACUGUGU UUCUCCACU 23 8622 myoC-8877 - UAGAGCAAACUGUGUUUCUCCACU 24 8623 myoC-8878 - UUUAUACUCAAAACUACU 18 8624 myoC-8879 - AU UUAUACUCAAAACUACU 19 8625 myoC-2052 - UAU UUAUACUCAAAACUACU 20 2183 myoC-8880 - AUAUUUAUACUCAAAACUACU 21 8626 myoC-8881 - AAUAUUUAUACUCAAAACUACU 22 8627 myoC-8882 - AAAUAU UUAUACUCAAAACUACU 23 8628 myoC-8883 - GAAAUAUUUAUACUCAAAACUACU 24 8629 myoC-8884 - ACUAGUAAU UUAGCUCCU 18 8630 myoC-8885 - UACUAGUAAUUUAGCUCCU 19 8631 myoC-8886 - UUACUAGUAAUUUAGCUCCU 20 8632 myoC-8887 - AU UACUAGUAAUU UAGCUCCU 21 8633 myoC-8888 - UAUUACUAGUAAU UUAGCUCCU 22 8634 myoC-8889 - GUAUUACUAGUAAU UUAGCUCCU 23 8635 myoC-8890 - AGUAUUACUAGUAAUU UAGCUCCU 24 8636 myoC-5251 - CCAGGAGGUAGCAAGGCU 18 4997 myoC-5252 - GCCAGGAGGUAGCAAGGCU 19 4998 myoC-1656 - AGCCAGGAGGUAGCAAGGCU 20 1919 myoC-5253 - CAGCCAGGAGGUAGCAAGGCU 21 4999 myoC-5254 - GCAGCCAGGAGGUAGCAAGGCU 22 5000 myoC-5255 - AGCAGCCAGGAGGUAGCAAGGCU 23 5001 myoC-5256 - C AG C AG CC AG G AG G U AG C A AG G C U 24 5002 myoC-8891 - ACU UCCCUGUGAUUCUCU 18 8637 myoC-8892 - CACUUCCCUGUGAU UCUCU 19 8638 myoC-1931 - ACACU UCCCUGUGAUUCUCU 20 2107 myoC-8893 - AACACUUCCCUGUGAUUCUCU 21 8639 myoC-8894 - GAACACUUCCCUGUGAUUCUCU 22 8640 myoC-8895 - UGAACACUUCCCUGUGAUUCUCU 23 8641 myoC-8896 - GUGAACACUUCCCUGUGAU UCUCU 24 8642 myoC-8897 - UAGGAACUCUUUU UCUCU 18 8643 myoC-8898 - UUAGGAACUCUUU UUCUCU 19 8644 myoC-2019 - AUUAGGAACUCUUUU UCUCU 20 2156 myoC-8899 - UAUUAGGAACUCUUU UUCUCU 21 8645 myoC-8900 - UUAUUAGGAACUCUU UUUCUCU 22 8646 myoC-8901 - CU UAUUAGGAACUCUUUU UCUCU 23 8647 myoC-8902 - CCUUAUUAGGAACUCUU UUUCUCU 24 8648 myoC-8903 - CACGUGAUCCUGGGUUCU 18 8649 myoC-8904 - CCACGUGAUCCUGGGU UCU 19 8650 myoC-1132 - UCCACGUGAUCCUGGGUUCU 20 1432 myoC-8905 - GUCCACGUGAUCCUGGGUUCU 21 8651 myoC-8906 - AGUCCACGUGAUCCUGGGUUCU 22 8652 myoC-8907 - UAGUCCACGUGAUCCUGGGUUCU 23 8653 myoC-8908 - AUAGUCCACGUGAUCCUGGGUUCU 24 8654 myoC-8909 - UUGCAGCUCUCGUGUUCU 18 8655 myoC-8910 - CUUGCAGCUCUCGUGU UCU 19 8656 myoC-1930 - CCUUGCAGCUCUCGUGU UCU 20 2106 myoC-8911 - CCCUUGCAGCUCUCGUG UUCU 21 8657 myoC-8912 - ACCCU UGCAGCUCUCGUGUUCU 22 8658 myoC-8913 - GACCCU UGCAGCUCUCG UGUUCU 23 8659 myoC-8914 - AGACCCUUGCAGCUCUCGUGUUCU 24 8660 myoC-8915 - AUU UGAAAACAUCU UUCU 18 8661 myoC-8916 - UAUU UGAAAACAUCUU UCU 19 8662 myoC-2056 - AUAUUUGAAAACAUCUUUCU 20 2187 myoC-8917 - UAUAUUUGAAAACAUCUUUCU 21 8663 myoC-8918 - AUAUAUU UGAAAACAUCUUUCU 22 8664 myoC-8919 - UAUAUAUU UGAAAACAUCUUUCU 23 8665 myoC-8920 - U UAUAUAU UUGAAAACAUCUUUCU 24 8666 myoC-8921 - AAUCAGU UCAAGGGAAGU 18 8667 myoC-8922 - AAA U C AG U U C A AG G G A AG U 19 8668 myoC-1143 - AAAAUCAG U U CAAGG G AAG U 20 1443 myoC-8923 - A A A A A U C AG U U C A AG G G A AG U 21 8669 myoC-8924 - A A A A A A U C AG U U C A AG G G A AG U 22 8670 myoC-8925 - G AAAAAAU CAG U UCAAGGG AAG U 23 8671 myoC-8926 - GGAAAAAAUCAGUUCAAGGGAAGU 24 8672 myoC-8927 - UGAGUCUGCCAGGGCAGU 18 8673 myoC-8928 - GUGAGUCUGCCAGGGCAGU 19 8674 myoC-2037 - GG UGAGUCUGCCAGGGCAGU 20 2171 myoC-8929 - AGGUGAGUCUGCCAGGGCAG U 21 8675 myoC-8930 - GAGGUGAGUCUGCCAGGGCAG U 22 8676 myoC-8931 - GGAGGUGAGUCUGCCAGGGCAGU 23 8677 myoC-8932 - UGGAGG UGAGUCUGCCAGGGCAGU 24 8678 myoC-8933 - CA U G C AC AC AC AC AG AG U 18 8679 myoC-8934 - G CA U G CAC ACACACAG AG U 19 8680 myoC-2060 - G G C A U G C AC AC AC AC AG AG U 20 2191 myoC-8935 - U G G C A U G C AC AC AC AC AG AG U 21 8681 myoC-8936 - U U G G C A U G C AC AC AC AC AG AG U 22 8682 myoC-8937 - CUUGGCAUGCACACACACAGAGU 23 8683 myoC-8938 - UCU UGGCAUGCACACACACAGAGU 24 8684 myoC-5289 - AAGGUAAGAAUGCAGAGU 18 5035 myoC-5290 - GAAGGUAAGAAUGCAGAGU 19 5036 myoC-3191 - AGAAGGUAAGAAUGCAGAGU 20 2937 myoC-5291 - GAGAAGGUAAGAAUGCAGAGU 21 5037 myoC-5292 - AG AG AAGGUAAGAAUGCAGAGU 22 5038 myoC-5293 - CAGAGAAGGUAAGAAUGCAGAGU 23 5039 myoC-5294 - CCAG AG AAGG U AAG AAU GCAG AG U 24 5040 myoC-3765 - AGAAUCUGGCCAGGAGGU 18 3511 myoC-3766 - GAGAAUCUGGCCAGGAGGU 19 3512 myoC-197 - UG AGAAUCUGGCCAGGAGGU 20 583 myoC-3767 - AUG AGAAUCUGGCCAGGAGGU 21 3513 myoC-3768 - AAUG AGAAUCUGGCCAGGAGGU 22 3514 myoC-3769 - AAAUG AGAAUCUGGCCAGGAGGU 23 3515 myoC-3770 - AAAAUGAGAAUCUGGCCAGGAGGU 24 3516 myoC-8939 - UGUUU UAAAGCUAGGGGU 18 8685 myoC-8940 - UUGUU UUAAAGCUAGGGGU 19 8686 myoC-2068 - GU UGUU UUAAAGCUAGGGGU 20 2199 myoC-8941 - AGUUG UUUUAAAGCUAGGGGU 21 8687 myoC-8942 - CAGUUGUUU UAAAGCUAGGGGU 22 8688 myoC-8943 - ACAGU UGUUUUAAAGCUAGGGG U 23 8689 myoC-8944 - CACAGUUGUUU UAAAGCUAGGGGU 24 8690 myoC-8945 - UUCCCUGUGAUUCUCUGU 18 8691 myoC-8946 - CUUCCCUGUGAUUCUCUGU 19 8692 myoC-1932 - ACU UCCCUGUGAUUCUCUGU 20 2108 myoC-8947 - CACU UCCCUGUGAU UCUCUGU 21 8693 myoC-8948 - ACACUUCCCUGUGAUUCUCUGU 22 8694 myoC-8949 - AACACU UCCCUGUGAUUCUCUGU 23 8695 myoC-8950 - GAACACUUCCCUGUGAUUCUCUGU 24 8696 myoC-8951 - AAAAGAGAGGGAUAGUGU 18 8697 myoC-8952 - AAAAAGAGAGGGAUAGUGU 19 8698 myoC-1990 - GAAAAAGAGAGGGAUAGUGU 20 2141 myoC-8953 - AGAAAAAGAGAGGGAUAGUGU 21 8699 myoC-8954 - AAG A A A A AG AGAGGGAUAGUGU 22 8700 myoC-8955 - G AAG AAAAAGAGAGGGAUAGUGU 23 8701 myoC-8956 - AGAAGAAAAAGAGAGGGAUAGUGU 24 8702 myoC-8957 - GAGGCAGGGCUAUAUUGU 18 8703 myoC-8958 - GGAGGCAGGGCUAUAUUGU 19 8704 myoC-1137 - AGGAGGCAGGGCUAUAUUGU 20 1437 myoC-8959 - UAGGAGGCAGGGCUAUAU UGU 21 8705 myoC-8960 - CUAGGAGGCAGGGCUAUAUUGU 22 8706 myoC-8961 - UCUAGGAGGCAGGGCUAUAUUGU 23 8707 myoC-8962 - UUCUAGGAGGCAGGGCUAUAUUGU 24 8708 myoC-8963 - G C AC A AG ACAGAUGAAUU 18 8709 myoC-8964 - AGCACAAGACAGAUGAAUU 19 8710 myoC-8965 - UAGCACAAG ACAGAUGAAUU 20 8711 myoC-8966 - CU AGCACAAGACAGAUGAAUU 21 8712 myoC-8967 - GCU AGCACAAGACAGAUGAAUU 22 8713 myoC-8968 - AGCU AGCACAAGACAGAUGAAUU 23 8714 myoC-8969 - CAGCU AGCACAAGACAGAUGAAUU 24 8715 myoC-8970 - UUUACAAGCUGAGUAAUU 18 8716 myoC-8971 - CU UUACAAGCUGAGUAAUU 19 8717 myoC-2015 - CCUUUACAAGCUGAGUAAUU 20 2153 myoC-8972 - UCCUUUACAAGCUGAGUAAUU 21 8718 myoC-8973 - UUCCUUUACAAGCUGAGUAAUU 22 8719 myoC-8974 - U UUCCUU UACAAGCUGAGUAAUU 23 8720 myoC-8975 - UU UUCCU UUACAAGCUGAGUAAUU 24 8721 myoC-8976 - AC AG AG U A AG A AC U G A U U 18 8722 myoC-8977 - CACAGAGUAAGAACUGAU U 19 8723 myoC-2061 - AC AC AG AG U A AG A AC U G A U U 20 2192 myoC-8978 - CA CACAGAGUAAGAACUGAUU 21 8724 myoC-8979 - ACACACAG AG UAAGAACUGAU U 22 8725 myoC-8980 - CACACAC AG AG U AAGAACUGAU U 23 8726 myoC-8981 - ACACACACAG AG UAAGAACUGAU U 24 8727 myoC-8982 - GAUGUUUACUAUCUGAUU 18 8728 myoC-8983 - CGAUGUU UACUAUCUGAUU 19 8729 myoC-2027 - GCGAUGUU UACUAUCUGAUU 20 2162 myoC-8984 - AGCGAUGUUUACUAUCUGAUU 21 8730 myoC-8985 - CAGCGAUGUU UACUAUCUGAUU 22 8731 myoC-8986 - UCAGCGAUGUU UACUAUCUGAUU 23 8732 myoC-8987 - UUCAGCGAUGUU UACUAUCUGAUU 24 8733 myoC-8988 - AGGAGGCAGGGCUAUAU U 18 8734 myoC-8989 - UAGGAGGCAGGGCUAUAUU 19 8735 myoC-2002 - CU AGGAGGCAGGGCUAUAUU 20 2149 myoC-8990 - UCU AGGAGGCAGGGCUAUAUU 21 8736 myoC-8991 - UUCU AGGAGGCAGGGCUAUAUU 22 8737 myoC-8992 - GU UCU AGGAGGCAGGGCUAUAUU 23 8738 myoC-8993 - GGU UCUAGGAGGCAGGGCUAUAUU 24 8739 myoC-8994 - ACU UAGUUUCUCCUUAUU 18 8740 myoC-8995 - UACU UAGUUUCUCCUUAUU 19 8741 myoC-1147 - U UACU UAGUUUCUCCU UAUU 20 1447 myoC-8996 - AUUACUUAGU UUCUCCUUAUU 21 8742 myoC-8997 - GAUUACUUAGU UUCUCCUUAUU 22 8743 myoC-8998 - AGAUUACUUAGUUUCUCCU UAUU 23 8744 myoC-8999 - AAGAUUACU UAGUUUCUCCUUAUU 24 8745 myoC-9000 - AG UUGUCAAUUGUCCCUU 18 8746 myoC-9001 - AAGUUGUCAAUUGUCCCUU 19 8747 myoC-9002 - AAAGUUGUCAAU UGUCCCUU 20 8748 myoC-9003 - GAAAGU UGUCAAUUGUCCCUU 21 8749 myoC-9004 - AGAAAGUUGUCAAUUG UCCCUU 22 8750 myoC-9005 - UAGAAAGUUGUCAAUUGUCCCUU 23 8751 myoC-9006 - GUAGAAAGUUGUCAAUUGUCCCUU 24 8752 myoC-9007 - CCGAGAGCCACAAUGCUU 18 8753 myoC-9008 - ACCGAGAGCCACAAUGCUU 19 8754 myoC-1966 - GACCGAGAGCCACAAUGCUU 20 2125 myoC-9009 - GG ACCGAGAGCCACAAUGCUU 21 8755 myoC-9010 - AGG ACCGAGAGCCACAAUGCUU 22 8756 myoC-9011 - CAGG ACCGAGAGCCACAAUGCUU 23 8757 myoC-9012 - CCAGG ACCG AG AGCCACAAUGCU U 24 8758 myoC-9013 - AAAUAAGAAUAGAAUCUU 18 8759 myoC-9014 - CAAAU AAG AAU AG AAUCU U 19 8760 myoC-2032 - U C A A A U A AG A A U AG A A U CU U 20 2167 myoC-9015 - AUCAAAU AAG AAU AG AAUCU U 21 8761 myoC-9016 - AAUCAAAU AAG AAU AG AAUCU U 22 8762 myoC-9017 - C A A UCAAAUAAGAAUAGAAUCUU 23 8763 myoC-9018 - CCA A UCAAAUAAGAAUAGAAUCU U 24 8764 myoC-9019 - GAGUCUGCCAGGGCAGU U 18 8765 myoC-9020 - UGAGUCUGCCAGGGCAGUU 19 8766 myoC-1160 - GUGAGUCUGCCAGGGCAGUU 20 1460 myoC-9021 - GG UGAGUCUGCCAGGGCAGU U 21 8767 myoC-9022 - AGGUGAGUCUGCCAGGGCAGU U 22 8768 myoC-9023 - GAGGUGAG UCUGCCAGGGCAG UU 23 8769 myoC-9024 - GGAGGUGAGUCUGCCAGGGCAGUU 24 8770 myoC-9025 - UCUGUGAGGGGGGAUGUU 18 8771 myoC-9026 - CUCUGUGAGGGGGGAUGUU 19 8772 myoC-1938 - UCUCUGUGAGGGGGGAUGUU 20 2110 myoC-9027 - UUCUCUGUGAGGGGGGAUGU U 21 8773 myoC-9028 - AU UCUCUGUGAGGGGGGAUGUU 22 8774 myoC-9029 - GAU UCUCUGUGAGGGGGGAUGUU 23 8775 myoC-9030 - UGAU UCUCUGUGAGGGGGGAUGUU 24 8776 myoC-9031 - UUAAAAUGACCUUUAUU U 18 8777 myoC-9032 - GU UAAAAUGACCUUUAU UU 19 8778 myoC-9033 - UGUUAAAAUGACCUU UAUUU 20 8779 myoC-9034 - AUGU UAAAAUGACCU UUAUU U 21 8780 myoC-9035 - GAUGUUAAAAUGACCUUUAU UU 22 8781 myoC-9036 - UGAUGUUAAAAUGACCUUUAUUU 23 8782 myoC-9037 - UUGAUGUUAAAAUGACCUUUAUUU 24 8783 myoC-9038 - AUAUU UGAAAACAUCU UU 18 8784 myoC-9039 - UAUAU UUGAAAACAUCUUU 19 8785 myoC-2055 - AUAUAUUUGAAAACAUCUUU 20 2186 myoC-9040 - UAUAUAUU UGAAAACAUCUUU 21 8786 myoC-9041 - UUAUAUAU UUGAAAACAUCUUU 22 8787 myoC-9042 - UUUAUAUAUUUGAAAACAUCUU U 23 8788 myoC-9043 - UUUUAUAUAUUUGAAAACAUCUUU 24 8789 myoC-9044 - UUGAAAAACUAUCCUU UU 18 8790 myoC-9045 - U UUGAAAAACUAUCCU UUU 19 8791 myoC-9046 - U U U UG AAAAACU AU CCU U U U 20 8792 myoC-9047 - CU U U U G AAAAACU AUCCU U U U 21 8793 myoC-9048 - CCUU UUGAAAAACUAUCCUUUU 22 8794 myoC-9049 - CCCUUU UGAAAAACUAUCCUUU U 23 8795 myoC-9050 - UCCCUU UUGAAAAACUAUCCUUU U 24 8796 myoC-9051 - GACUAUAUGAUUGGU UUU 18 8797 myoC-9052 - UGACUAUAUGAUUGGU UUU 19 8798 myoC-2026 - CUGACUAUAUGAUUGGUUU U 20 2161 myoC-9053 - GCUGACUAUAUGAUUGGUU UU 21 8799 myoC-9054 - UGCUGACUAUAUGAUUGGUU UU 22 8800 myoC-9055 - UUGCUGACUAUAUGAU UGGU UUU 23 8801 myoC-9056 - CUUGCUGACUAUAUGAUUGGUUU U 24 8802
Table 11A provides exemplary targeting domains for knocking down the MYOC gene selected according to the first tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site, have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene. Table 11A
Figure imgf000435_0001
myoC-3082 + GCCUGGCUCUGCUCUGGGCA 20 2844 myoC-9058 + GCGCUGUGACUGAUGGAGGA 20 8804 myoC-2153 + GAGGAGGAGGCUUGGAAGAC 20 2263 myoC-9059 - GUUAUCACUCUCUAGGGACC 20 8805 myoC-5355 + GCACAG AAG AACCUCAU UGC 20 5101 myoC-5356 - GGUUCUUCUGUGCACGU UGC 20 5102
Table 11B provides exemplary targeting domains for knocking down the MYOC gene selected according to the second tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 11B
Figure imgf000436_0001
myoC-9068 - ACAGCGCUGCAGCUGGCCUG 20 8814 myoC-9069 + UGAACAACACUGAACAUCUG 20 8815 myoC-3124 + U UACACCAGGACUACUGGUG 20 2878 myoC-9070 + CUCCACGAAGGUAGGGCAGU 20 8816
Table 11C provides exemplary targeting domains for knocking down the MYOC gene selected according to the third tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 11C
Figure imgf000437_0001
Table 11D provides exemplary targeting domains for knocking down the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 3454- 2454bp upstream of transcription start site or 500bp upstream and downstream of transcription start site. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene.
Table 11D
4th Tier
DNA Target Site
gRNA Name Targeting Domain
Strand Length Seq ID myoC-3139 + CCAGCUCAGAUGCACCA 17 2890 myoC-3084 + UGGCUCUGCUCUGGGCA 17 2850 myoC-820 + AGGACACCCAGGACCCC 17 1138 myoC-1788 + CUCUCCAGGGAGCUGAG 17 2017 myoC-5364 + UCUCAUUUUCU UGCCUU 17 5110 myoC-743 + CUCAGGACACCCAGGACCCC 20 1107 myoC-5365 - UGAGAUGCCAGCUGUCCAGC 20 5111 myoC-1678 + AGGCUCUCCAGGGAGCUGAG 20 1939 myoC-9072 - UGUGAGCCUU UUUAUCUUUU 20 8818
Table HE provides exemplary targeting domains for knocking down the MYOC gene selected according to the fifth tier parameters. The targeting domains bind within 2484-903bp upstream of transcription start site or the additional 500bp upstream and downstream of transcription start site (extending to lkb up and downstream of the transcription start site). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a N. meningitidis eiCas9 molecule or eiCas9 fusion protein (e.g., an eiCas9 fused to a transcription repressor domain) to alter the MYOC gene (e.g., reduce or eliminate MYOC gene expression, MYOC protein function, or the level of MYOC protein). One or more gRNA may be used to target an eiCas9 to the promoter region of the MYOC gene. Table HE
Figure imgf000438_0001
myoC-9081 - AUUUAUUGGCUAUUGCC 17 8827 myoC-3126 - GUUCUGUGAACACUUCC 17 2880 myoC-3151 + AGCAUUCCUAUAGAAGC 17 2901 myoC-5371 + CCUUGCUACCUCCUGGC 17 5117 myoC-2521 - G AG C A AG U G G A A A A U G C 17 2512 myoC-9082 - GGGUGAGGGGGGAAAUC 17 8828 myoC-3146 + AGAAACACAGUU UGCUC 17 2896 myoC-3141 + AGAAAGAAAACCGAGUC 17 2892 myoC-9083 + UUUCCUCAUUCAAAUUC 17 8829 myoC-3137 - CUUUCUGAGAAGAGU UC 17 2888 myoC-2586 - GGUU UAUUAAUGUAAAG 17 2553 myoC-3138 - CACACACACAGAGUAAG 17 2889 myoC-3130 - UCAAGGGAAGUCGGGAG 17 2882 myoC-9084 + AUACU UGAAGGUGAUCG 17 8830 myoC-3085 + UGCU UUCCAACCUCCUG 17 2851 myoC-3144 + GAUAGUAAACAUCGCUG 17 2894 myoC-9085 + ACCUAGGCU UGAAUCUG 17 8831 myoC-3142 + UCUCCCGACUUCCCU UG 17 2893 myoC-9086 - CCUU UUU UGAACCUU UG 17 8832 myoC-9087 + GACUGUAGGUUAAUAAU 17 8833 myoC-3133 - CCUAGGUCUUGCUGACU 17 2885 myoC-3134 - UUUCAGCGAUGU UUACU 17 2886 myoC-9088 - CUAGUAAUUUAGCUCCU 17 8834 myoC-3131 - AGGUAGUAACUGAGGCU 17 2883 myoC-9089 - UUGUAAAUGUCUCAAGU 17 8835 myoC-9090 - UGCAGAGACUAACUGGU 17 8836 myoC-3148 + AAUAUAGUAUAAAAUGU 17 2898 myoC-9091 + UUGGCAAAUGCCAU UGU 17 8837 myoC-5364 + UCUCAUUU UCUUGCCU U 17 5110 myoC-3145 + CUAAAGAUUCUAUUCU U 17 2895 myoC-3122 + AUGU UUUCAAAUAUAUAAAA 20 2876 myoC-3100 - GAUAGUGUAUGAGCAAGAAA 20 2857 myoC-3119 + UAACUUUAAGCCACU UGAAA 20 2873 myoC-2264 + U UUUCUUCCUGUUAAAAGAA 20 2345 myoC-3121 + AGGAAACAAAUGAUAAUGAA 20 2875 myoC-1996 - AGGGCAGUGGGAAUUGACCA 20 2145 myoC-3104 - C A U U CC U A AG AG U A A AG CCA 20 2860 myoC-9092 - GACUCCAGGACCGAGAGCCA 20 8838 myoC-9093 + CAGUGAGGACUGAUGGAGCA 20 8839 myoC-9094 - U UUAGCUCCUGAGAGCUUCA 20 8840 myoC-2234 + AAAUGUGGCUGU UGGGUUCA 20 2322 myoC-9095 - CAAAGGCAAUCAUUAUU UCA 20 8841 myoC-9096 - CUACUCAGCCCUGUGGUGGA 20 8842 myoC-9097 + UUGUGACUUGCUCAGAAUUA 20 8843 myoC-9098 + AAUCAUAUAGUCAGCAAGAC 20 8844 myoC-3108 - CAAAGUGGUAAUAACAGUAC 20 2863 myoC-9099 + GGCAGAUUUCCCCCCUCACC 20 8845 myoC-9100 - UAUAUU UAUUGGCUAU UGCC 20 8846 myoC-3098 - CGUGUUCUGUGAACACUUCC 20 2856 myoC-3123 + G AG AGCAU UCCU AU AG AAGC 20 2877 myoC-5388 + CAGCCU UGCUACCUCCUGGC 20 5134 myoC-1975 - CCAGAGCAAGUGGAAAAUGC 20 2132 myoC-9101 - UAGGGGUGAGGGGGGAAAUC 20 8847 myoC-3118 + UGGAGAAACACAG UUUGCUC 20 2872 myoC-3113 + ACCAGAAAGAAAACCGAGUC 20 2868 myoC-9102 + U UUUUUCCUCAUUCAAAUUC 20 8848 myoC-3109 - CAUCUUUCUGAGAAGAGUUC 20 2864 myoC-2040 - UUGGGU UUAUUAAUGUAAAG 20 2173 myoC-3110 - AUG CACACACAC AG AG U AAG 20 2865 myoC-3102 - AGUUCAAGGGAAGUCGGGAG 20 2858 myoC-9103 + GUAAUACUUGAAGGUGAUCG 20 8849 myoC-3083 + UGCUGCUU UCCAACCUCCUG 20 2845 myoC-3116 + U C AG AU AG UAAACAUCGCUG 20 2870 myoC-9104 + AAGACCUAGGCUUGAAUCUG 20 8850 myoC-3114 + AGGUCUCCCGACU UCCCUUG 20 2869 myoC-9105 - UAUCCU UUUU UGAACCUU UG 20 8851 myoC-9106 + CUGGACUGUAGGUUAAUAAU 20 8852 myoC-3105 - AAGCCUAGGUCU UGCUGACU 20 2861 myoC-3106 - UCAUUUCAGCGAUGUUUACU 20 2862 myoC-8886 - UUACUAGUAAUUUAGCUCCU 20 8632 myoC-3103 - ACAAGGUAGUAACUGAGGCU 20 2859 myoC-9107 - CAU UUGUAAAUGUCUCAAGU 20 8853 myoC-9108 - GAAUGCAGAGACUAACUGGU 20 8854 myoC-3120 + UGUAAUAUAGUAUAAAAUGU 20 2874 myoC-9109 + U UAU UGGCAAAUGCCAUUGU 20 8855 myoC-5363 + GAUUCUCAUUU UCUUGCCUU 20 5109 myoC-3117 + GCUCUAAAGAUUCUAUUCUU 20 2871
Table 12A provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site, have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 12A
1st Tier Target SEQ
DNA
gRNA Name Targeting Domain Site ID
Strand
Length NO
MYOC-hotspot200up-l + GCUGCUGACGGUGUACA 17 909
MYOC-hotspot200up-2 + GCGGUUCUUGAAUGGGA 17 446
MYOC-hotspot200up-3 - GCUUAUGACACAGGCAC 17 451
MYOC-hotspot200up-4 + GACGGUAGCAUCUGCUG 17 907
MYOC-hotspot200up-5 - GGAACUCGAACAAACCU 17 884
MYOC-hotspot200up-6 + GUAGCUGCUGACGGUGUACA 20 790
MYOC-hotspot200up-7 - GUCAACUUUGCUUAUGACAC 20 439
MYOC-hotspot200up-8 + GGUUCUUGAAUGGGAUGG UC 20 449
MYOC-hotspot200up-9 + GUUGACGGUAGCAUCUGCUG 20 788
MYOC-hotspot200up-10 - GCCAAUGCCUUCAUCAUCUG 20 768
MYOC-hotspot200up-ll + GCCACAGAUGAUGAAGGCAU 20 792
Table 12B provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase) Table 12B
Figure imgf000441_0001
MYOC-hotspot200up-27 + ACUUAUAGCGGUUCUUGAAU 20 462
MYOC-hotspot200up-28 - UCUGGAACUCGAACAAACCU 20 767
Table 12C provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 12C
Figure imgf000442_0001
Table 12D provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 12D
Figure imgf000442_0002
Table 13A provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site, have a high level of orthogonality, start with a 5'G, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13A
Figure imgf000443_0001
Table 13B provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site, have a high level of orthogonality and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break
(Cas9 nickase).
Table 13B
2nd Tier
DNA Target SEQ gRNA Name Stran Targeting Domain Site ID d Length NO
MYOC-hotspot200up-44 + UGUACUUAUAGCGGU UCUUGAA 22 3612
MYOC-hotspot200up-45 + CUGUACUUAUAGCGGU UCUUGAA 23 3613
MYOC-hotspot200up-46 + CUGCUGUACUUAUAGCGGUUC 21 3658
MYOC-hotspot200up-47 + UGCUGCUGUACUUAUAGCGGUUC 23 3659
AUGCUGCUGUACUUAUAGCGGUU
MYOC-hotspot200up-48 + 24
C 3660 MYOC-hotspot200up-49 + AGCGGUUCUUGAAUGGGAUGGU 22 3680
MYOC-hotspot200up-50 + UAGCGGU UCUUGAAUGGGAUGGU 23 3681
AUAGCGGUUCUUGAAUGGGAUGG
MYOC-hotspot200up-51 + 24
U 3682
MYOC-hotspot200up-52 + AUGUU UGUCUCCCAGGU UUGU 21 3690
CGGAUGUUUGUCUCCCAGGUU UG
MYOC-hotspot200up-53 + 24
U 3691
Table 13C provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site, start with a 5 ' G and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 13C
Figure imgf000444_0001
Table 13D provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13D
4th Tier
DNA Target SEQ ID gRNA Name Targeting Domain
Strand Site NO Length
MYOC-hotspot200up-61 + CUUAUAGCGGUUCUUGAA 18 3610
MYOC-hotspot200up-62 + ACUUAUAGCGGUUCUUGAA 19 3611
MYOC-hotspot200up-20 + UACUUAUAGCGGU UCU UGAA 20 461
MYOC-hotspot200up-63 + CUGUACUUAUAGCGGUUC 18 3657
MYOC-hotspot200up-64 + UGCUGUACUUAUAGCGGUUC 20 1856
MYOC-hotspot200up-65 + CGGU UCUUGAAUGGGAUGGU 20 1854
MYOC-hotspot200up-66 + UUUGUCUCCCAGGU UUGU 18 3689
MYOC-hotspot200up-67 + UGUUUGUCUCCCAGGUUUGU 20 2792
MYOC-hotspot200up-68 + AUUGGCGACUGACUGCU U 18 3695
MYOC-hotspot200up-69 + CAUUGGCGACUGACUGCUU 19 3696
MYOC-hotspot200up-70 + AGGCAU UGGCGACUGACUGCUU 22 3697
MYOC-hotspot200up-71 + AAGGCAUUGGCGACUGACUGCUU 23 3698
Table 13E provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fifth tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site, and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 13E
Figure imgf000445_0001
MYOC-hotspot200up-88 + AAAGUUGACGGUAGCAUCUG 20 1853
MYOC-hotspot200up-89 + CAAAGUUGACGGUAGCAUCUG 21 4180
MYOC-hotspot200up-90 + GCAAAGUUGACGGUAGCAUCUG 22 4181
MYOC-hotspot200up-91 + AGCAAAGUUGACGGUAGCAUCUG 23 4182
MYOC-hotspot200up-92 + AAGCAAAGUUGACGGUAGCAUCUG 24 4183
MYOC-hotspot200up-93 - CUGGAACUCGAACAAACC 18 4537
MYOC-hotspot200up-94 - UCUGGAACUCGAACAAACC 19 4538
MYOC-hotspot200up-25 - AUCUGGAACUCGAACAAACC 20 766
MYOC-hotspot200up-95 - ACCCUGACCAUCCCAU UC 18 4673
MYOC-hotspot200up-96 - GACCCUGACCAUCCCAUUC 19 4674
MYOC-hotspot200up-97 - AGACCCUGACCAUCCCAUUC 20 1846
MYOC-hotspot200up-98 - AAG ACCCUG ACCAUCCCAU UC 21 4675
MYOC-hotspot200up-99 - CAAG ACCCUG ACCAUCCCAU UC 22 4676
MYOC-hotspot200up-100 - GCAAG ACCCUGACCAUCCCAUUC 23 4677
MYOC-hotspot200up-101 - AGCAAGACCCUGACCAUCCCAUUC 24 4678
MYOC-hotspot200up-102 - UGGAACUCGAACAAACCU 18 4978
MYOC-hotspot200up-103 - CUGGAACUCGAACAAACCU 19 4979
MYOC-hotspot200up-28 - UCUGGAACUCGAACAAACCU 20 767
Table 14A provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site, have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 14A
Figure imgf000446_0001
Table 14B provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 14B
Figure imgf000447_0001
Table 14C provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp upstream from the mutational hotspot 477-502 target site. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 14C
Figure imgf000447_0002
Table 15A provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site, have a high level of orthogonality and start with a 5 ' G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 15A
Figure imgf000447_0003
Strand Site ID
Length NO
MYOC-hotspot200down-l - GCUGUACAGGCAAUGGCAGA 20 771
MYOC-hotspot200down-2 - GAAAAGCCUCCAAGCUG UAC 20 769
MYOC-hotspot200down-3 + GGUGACCAUGUUCAUCCU UC 20 852
Table 15B provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 15B
Figure imgf000448_0001
Table 15C provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 15C
Figure imgf000449_0001
Table 15D provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 15D
Figure imgf000449_0002
MYOC-hotspot200down-41 - CCAAGCUGUACAGGCAA 17 888
MYOC-hotspot200down-42 - AUCCAGAAGGAUGAACA 17 946
MYOC-hotspot200down-43 - UGGGGGGAGCAGGCUGA 17 898
MYOC-hotspot200down-44 + UUCAGCCUGCUCCCCCC 17 904
MYOC-hotspot200down-45 - CC AG CC AG CC AG G G CCC 17 902
MYOC-hotspot200down-46 + CAAAGCUGCCUGGGCCC 17 1805
MYOC-hotspot200down-47 + A AG C AG U C A A AG C U G CC 17 974
MYOC-hotspot200down-48 + CCUGGGCCCUGGCUGGC 17 903
MYOC-hotspot200down-49 - UGCUCAGGGCUCCUGGG 17 896
MYOC-hotspot200down-50 - AUGCUCAGGGCUCCUGG 17 895
MYOC-hotspot200down-51 - UCAGGAAU UGUAGUCUG 17 948
MYOC-hotspot200down-52 + CUGGAUUAAUGAAAACU 17 973
MYOC-hotspot200down-53 + AG C AG U C A A AG C U G CC U 17 975
MYOC-hotspot200down-54 - AGAUGCUCAGGGCUCCU 17 893
MYOC-hotspot200down-55 + CCAUUGCCUGUACAGCU 17 905
MYOC-hotspot200down-56 - CCUGGGGGGAGCAGGCUGAA 20 781
MYOC-hotspot200down-57 - AAGGGAGAGCCAGCCAGCCA 20 783
MYOC-hotspot200down-58 - AUGGCAGAAGGAGAUGCUCA 20 773
MYOC-hotspot200down-59 - UCCUGGGGGGAGCAGGCUGA 20 780
MYOC-hotspot200down-60 - UCAGGGCUCCUGGGGGGAGC 20 779
MYOC-hotspot200down-61 + CUGCCUGGGCCCUGGCUGGC 20 1804
MYOC-hotspot200down-62 - AAUGGCAGAAGGAGAUGCUC 20 772
MYOC-hotspot200down-63 - AGAUGCUCAGGGCUCCUGGG 20 778
MYOC-hotspot200down-64 - UAUUCAGGAAUUGUAGUCUG 20 828
Table 16A provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site, have a high level of orthogonality, start with a 5'G, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 16A
Figure imgf000450_0001
Table 16B provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site, have a high level of orthogonality and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break
(Cas9 nickase).
Table 16B
Figure imgf000451_0001
Table 16C provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site, start with a 5 ' G and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 16C
3rd Tier
Target
DNA SEQ ID
gRNA Name Targeting Domain Site
Strand NO
Length
MYOC-hotspot200down-77 + GCCCUCAGACUACAAUUC 18 3550
MYOC-hotspot200down-78 + GUGACCAUGUUCAUCCUU 18 3568
MYOC-hotspot200down-79 + GGUGACCAUGUUCAUCCUU 19 3569 MYOC-hotspot200down-80 - GUCACCAUCUAACUAU UC 18 3586
MYOC-hotspot200down-81 - GGUCACCAUCUAACUAU UC 19 3587
Table 16D provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 16D
Figure imgf000452_0001
Table 16E provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fifth tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site, and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 16E
Figure imgf000452_0002
MYOC-hotspot200down-92 + GUUCAUCCUUCUGGAUUA 18 3918
MYOC-hotspot200down-93 + UGUUCAUCCUUCUGGAU UA 19 3919
MYOC-hotspot200down-94 + AUGUUCAUCCUUCUGGAUUA 20 2814
MYOC-hotspot200down-95 + CAUGUUCAUCCUUCUGGAUUA 21 3920
MYOC-hotspot200down-96 + CCAUGUUCAUCCUUCUGGAUUA 22 3921
MYOC-hotspot200down-97 + ACCAUGUUCAUCCUUCUGGAUUA 23 3922
MYOC-hotspot200down-98 + GACCAUGUUCAUCCUUCUGGAU UA 24 3923
MYOC-hotspot200down-99 + UUCUGGAUUAAUGAAAAC 18 3931
MYOC-hotspot200down-100 + CU UCUGGAUUAAUGAAAAC 19 3932
MYOC-hotspot200down-101 + CCUUCUGGAUUAAUGAAAAC 20 2813
MYOC-hotspot200down-102 + UCCUUCUGGAUUAAUGAAAAC 21 3933
MYOC-hotspot200down-103 + AUCCUUCUGGAUUAAUGAAAAC 22 3934
MYOC-hotspot200down-104 + CAUCCUUCUGGAUUAAUGAAAAC 23 3935
MYOC-hotspot200down-105 + UCAUCCUUCUGGAUUAAUGAAAAC 24 3936
MYOC-hotspot200down-106 + CUUCAGCCUGCUCCCCCC 18 3956
MYOC-hotspot200down-107 + CCUUCAGCCUGCUCCCCCC 19 3957
MYOC-hotspot200down-14 + CCCU U CAGCCUG CU CCCCCC 20 785
MYOC-hotspot200down-108 + UCCCUUCAGCCUGCUCCCCCC 21 3958
MYOC-hotspot200down-109 + CUCCCUUCAGCCUGCUCCCCCC 22 3959
MYOC-hotspot200down-110 + UCUCCCUUCAGCCUGCUCCCCCC 23 3960
MYOC-hotspot200down-lll + CUCUCCCUUCAGCCUGCUCCCCCC 24 3961
MYOC-hotspot200down-112 + CCUUCAGCCUGCUCCCCC 18 3962
MYOC-hotspot200down-113 + CCCUUCAGCCUGCUCCCCC 19 3963
MYOC-hotspot200down-114 + UCCCUUCAGCCUGCUCCCCC 20 2811
MYOC-hotspot200down-115 + CUCCCUUCAGCCUGCUCCCCC 21 3964
MYOC-hotspot200down-116 + UCUCCCUUCAGCCUGCUCCCCC 22 3965
MYOC-hotspot200down-117 + CUCUCCCU UCAGCCUGCUCCCCC 23 3966
MYOC-hotspot200down-118 + GCUCUCCCU UCAGCCUGCUCCCCC 24 3967
MYOC-hotspot200down-119 + CUGCUCCCCCCAGGAGCC 18 3974
MYOC-hotspot200down-120 + CCUGCUCCCCCCAGGAGCC 19 3975
MYOC-hotspot200down-121 + GCCUGCUCCCCCCAGGAGCC 20 2810
MYOC-hotspot200down-122 + AGCCUGCUCCCCCCAGGAGCC 21 3976
MYOC-hotspot200down-123 + CAGCCUGCUCCCCCCAGGAGCC 22 3977
MYOC-hotspot200down-124 + UCAGCCUGCUCCCCCCAGGAGCC 23 3978
MYOC-hotspot200down-125 + UUCAGCCUGCUCCCCCCAGGAGCC 24 3979
MYOC-hotspot200down-126 + UGCCAUUGCCUGUACAGC 18 4011
MYOC-hotspot200down-127 + CUGCCAUUGCCUGUACAGC 19 4012
MYOC-hotspot200down-128 + UCUGCCAU UGCCUGUACAGC 20 2809
MYOC-hotspot200down-129 + UUCUGCCAUUGCCUGUACAGC 21 4013
MYOC-hotspot200down-130 + CUUCUGCCAUUGCCUGUACAGC 22 4014
MYOC-hotspot200down-131 + CCU UCUGCCAUUGCCUGUACAGC 23 4015
MYOC-hotspot200down-132 + UCCUUCUGCCAU UGCCUGUACAGC 24 4016
MYOC-hotspot200down-133 + G A A AG C AG U C A A AG C U G C 18 4052
MYOC-hotspot200down-134 + GGAAAGCAGUCAAAGCUGC 19 4053
MYOC-hotspot200down-135 + U G G A A AG C AG U C A A AG C U G C 20 2812
MYOC-hotspot200down-136 + U U G G A A AG C AG U C A A AG C U G C 21 4054 MYOC-hotspot200down-137 + CUUGGAAAGCAGUCAAAGCUGC 22 4055
MYOC-hotspot200down-138 + AC U U G G A A AG C AG U C A A AG C U G C 23 4056
MYOC-hotspot200down-139 + AACUUGGAAAGCAGUCAAAGCUGC 24 4057
MYOC-hotspot200down-140 + UCUGGAU UAAUGAAAACU 18 4252
MYOC-hotspot200down-141 + UUCUGGAUUAAUGAAAACU 19 4253
MYOC-hotspot200down-20 + CU UCUGGAUUAAUGAAAACU 20 853
MYOC-hotspot200down-142 + CCUUCUGGAUUAAUGAAAACU 21 4254
MYOC-hotspot200down-143 + UCCUUCUGGAUUAAUGAAAACU 22 4255
MYOC-hotspot200down-144 + AUCCUUCUGGAUUAAUGAAAACU 23 4256
MYOC-hotspot200down-145 + CAUCCU UCUGGAUUAAUGAAAACU 24 4257
MYOC-hotspot200down-146 + GCCAUUGCCUGUACAGCU 18 4265
MYOC-hotspot200down-147 + UGCCAUUGCCUGUACAGCU 19 4266
MYOC-hotspot200down-22 + CUGCCAUUGCCUGUACAGCU 20 786
MYOC-hotspot200down-148 + UCUGCCAU UGCCUGUACAGCU 21 4267
MYOC-hotspot200down-149 + U UCUGCCAUUGCCUGUACAGCU 22 4268
MYOC-hotspot200down-150 + CUUCUGCCAUUGCCUGUACAGCU 23 4269
MYOC-hotspot200down-151 + CCU UCUGCCAUUGCCUGUACAGCU 24 4270
MYOC-hotspot200down-152 - UGGGGGGAGCAGGCUGAA 18 4370
MYOC-hotspot200down-153 - CUGGGGGGAGCAGGCUGAA 19 4371
MYOC-hotspot200down-56 - CCUGGGGGGAGCAGGCUGAA 20 781
MYOC-hotspot200down-154 - UCCUGGGGGGAGCAGGCUGAA 21 4372
MYOC-hotspot200down-155 - CUCCUGGGGGGAGCAGGCUGAA 22 4373
MYOC-hotspot200down-156 - GCUCCUGGGGGGAGCAGGCUGAA 23 4374
MYOC-hotspot200down-157 - GGCUCCUGGGGGGAGCAGGCUGAA 24 4375
MYOC-hotspot200down-158 - UGUACAGGCAAUGGCAGA 18 4408
MYOC-hotspot200down-159 - CUGUACAGGCAAUGGCAGA 19 4409
MYOC-hotspot200down-l - GCUGUACAGGCAAUGGCAGA 20 771
MYOC-hotspot200down-160 - AGCUGUACAGGCAAUGGCAGA 21 4410
MYOC-hotspot200down-161 - AAGCUGUACAGGCAAUGGCAGA 22 4411
MYOC-hotspot200down-162 - CAAGCUGUACAGGCAAUGGCAGA 23 4412
MYOC-hotspot200down-163 - CCAAGCUGUACAGGCAAUGGCAGA 24 4413
MYOC-hotspot200down-164 - CUGGGGGGAGCAGGCUGA 18 4453
MYOC-hotspot200down-165 - CCUGGGGGGAGCAGGCUGA 19 4454
MYOC-hotspot200down-59 - UCCUGGGGGGAGCAGGCUGA 20 780
MYOC-hotspot200down-166 - CUCCUGGGGGGAGCAGGCUGA 21 4455
MYOC-hotspot200down-167 - GCUCCUGGGGGGAGCAGGCUGA 22 4456
MYOC-hotspot200down-168 - GGCUCCUGGGGGGAGCAGGCUGA 23 4457
MYOC-hotspot200down-169 - GGGCUCCUGGGGGGAGCAGGCUGA 24 4458
MYOC-hotspot200down-170 - GGAGAUGCUCAGGGCUCC 18 4599
MYOC-hotspot200down-171 - AGGAGAUGCUCAGGGCUCC 19 4600
MYOC-hotspot200down-16 - AAGGAGAUGCUCAGGGCUCC 20 774
MYOC-hotspot200down-172 - GAAGGAGAUGCUCAGGGCUCC 21 4601
MYOC-hotspot200down-173 - AG AAGGAGAUGCUCAGGGCUCC 22 4602
MYOC-hotspot200down-174 - CAG AAGGAGAUGCUCAGGGCUCC 23 4603
MYOC-hotspot200down-175 - GCAG AAGGAGAUGCUCAGGGCUCC 24 4604
MYOC-hotspot200down-176 - AAGGGAGAGCCAGCCAGC 18 4618 MYOC-hotspot200down-177 - GAAGGGAGAGCCAGCCAGC 19 4619
MYOC-hotspot200down-178 - UGAAGGGAGAGCCAGCCAGC 20 2802
MYOC-hotspot200down-179 - CUGAAGGGAGAGCCAGCCAGC 21 4620
MYOC-hotspot200down-180 - GCUGAAGGGAGAGCCAGCCAGC 22 4621
MYOC-hotspot200down-181 - GGCUGAAGGGAGAGCCAGCCAGC 23 4622
MYOC-hotspot200down-182 - AGGCUGAAGGGAGAGCCAGCCAGC 24 4623
MYOC-hotspot200down-183 - UCCAAGUUUUCAUUAAUC 18 4642
MYOC-hotspot200down-184 - UUCCAAGU UUUCAUUAAUC 19 4643
MYOC-hotspot200down-185 - UUUCCAAGU UUUCAUUAAUC 20 2803
MYOC-hotspot200down-186 - CUUUCCAAGU UUUCAU UAAUC 21 4644
MYOC-hotspot200down-187 - GCU UUCCAAGUUUUCAUUAAUC 22 4645
MYOC-hotspot200down-188 - UGCUU UCCAAGUU UUCAUUAAUC 23 4646
MYOC-hotspot200down-189 - CUGCUUUCCAAGUUU UCAUUAAUC 24 4647
MYOC-hotspot200down-190 - AGGAGAUGCUCAGGGCUC 18 4660
MYOC-hotspot200down-191 - AAGGAGAUGCUCAGGGCUC 19 4661
MYOC-hotspot200down-192 - GAAGGAGAUGCUCAGGGCUC 20 2798
MYOC-hotspot200down-193 - AG AAGGAGAUGCUCAGGGCUC 21 4662
MYOC-hotspot200down-194 - CAG AAGGAGAUGCUCAGGGCUC 22 4663
MYOC-hotspot200down-195 - GCAG AAGGAGAUGCUCAGGGCUC 23 4664
MYOC-hotspot200down-196 - GGCAGAAGGAGAUGCUCAGGGCUC 24 4665
MYOC-hotspot200down-197 - CUGUACAGGCAAUGGCAG 18 4720
MYOC-hotspot200down-198 - GCUGUACAGGCAAUGGCAG 19 4721
MYOC-hotspot200down-199 - AGCUGUACAGGCAAUGGCAG 20 2796
MYOC-hotspot200down-200 - AAGCUG U ACAGGCAAUGGCAG 21 4722
MYOC-hotspot200down-201 - CAAGCUGUACAGGCAAUGGCAG 22 4723
MYOC-hotspot200down-202 - CCAAGCUGUACAGG C A A U G G C AG 23 4724
MYOC-hotspot200down-203 - UCCAAGCUGU ACAGGCAAUGGCAG 24 4725
MYOC-hotspot200down-204 - UUUCAUUAAUCCAGAAGG 18 4800
MYOC-hotspot200down-205 - UUUUCAUUAAUCCAGAAGG 19 4801
MYOC-hotspot200down-206 - GUUUUCAUUAAUCCAGAAGG 20 2805
MYOC-hotspot200down-207 - AGU U UUCAUUAAUCCAGAAGG 21 4802
MYOC-hotspot200down-208 - AAGU UUUCAUUAAUCCAGAAGG 22 4803
MYOC-hotspot200down-209 - CAAGUU UUCAU UAAUCCAGAAGG 23 4804
MYOC-hotspot200down-210 - CCAAGUUUUCAUUAAUCCAGAAGG 24 4805
MYOC-hotspot200down-211 - GGGGGAGCAGGCUGAAGG 18 4806
MYOC-hotspot200down-212 - GGGGGGAGCAGGCUGAAGG 19 4807
MYOC-hotspot200down-213 - UGGGGGGAGCAGGCUGAAGG 20 2801
MYOC-hotspot200down-214 - CUGGGGGGAGCAGGCUGAAGG 21 4808
MYOC-hotspot200down-215 - CCUGGGGGGAGCAGGCUGAAGG 22 4809
MYOC-hotspot200down-216 - UCCUGGGGGGAGCAGGCUGAAGG 23 4810
MYOC-hotspot200down-217 - CUCCUGGGGGGAGCAGGCUGAAGG 24 4811
MYOC-hotspot200down-218 - GCUCCUGGGGGGAGCAGG 18 4818
MYOC-hotspot200down-219 - GGCUCCUGGGGGGAGCAGG 19 4819
MYOC-hotspot200down-220 - GGGCUCCUGGGGGGAGCAGG 20 2799
MYOC-hotspot200down-221 - AGGGCUCCUGGGGGGAGCAGG 21 4820
MYOC-hotspot200down-222 - CAGGGCUCCUGGGGGGAGCAGG 22 4821 MYOC-hotspot200down-223 - UCAGGGCUCCUGGGGGGAGCAGG 23 4822
MYOC-hotspot200down-224 - CUCAGGGCUCCUGGGGGGAGCAGG 24 4823
MYOC-hotspot200down-225 - AUGCUCAGGGCUCCUGGG 18 4824
MYOC-hotspot200down-226 - GAUGCUCAGGGCUCCUGGG 19 4825
MYOC-hotspot200down-63 - AG AUGCUCAGGGCUCCUGGG 20 778
MYOC-hotspot200down-227 - GAG AUGCUCAGGGCUCCUGGG 21 4826
MYOC-hotspot200down-228 - GG AG AUGCUCAGGGCUCCUGGG 22 4827
MYOC-hotspot200down-229 - AGG AG AUGCUCAGGGCUCCUGGG 23 4828
MYOC-hotspot200down-230 - AAGGAGAUGCUCAGGGCUCCUGGG 24 4829
MYOC-hotspot200down-231 - AAGCUG U ACAGGCAAUGG 18 4837
MYOC-hotspot200down-232 - CAAGCUGUACAGGCAAUGG 19 4838
MYOC-hotspot200down-233 - CCAAGCUGU ACAGGCAAUGG 20 2795
MYOC-hotspot200down-234 - UCCAAGCUGU ACAGGCAAUGG 21 4839
MYOC-hotspot200down-235 - CUCCAAGCUGUACAGGCAAUGG 22 4840
MYOC-hotspot200down-236 - CCUCCAAGCUGU ACAGGCAAUGG 23 4841
MYOC-hotspot200down-237 - GCCUCCAAGCUGU ACAGGCAAUGG 24 4842
MYOC-hotspot200down-238 - GAUGCUCAGGGCUCCUGG 18 4843
MYOC-hotspot200down-239 - AGAUGCUCAGGGCUCCUGG 19 4844
MYOC-hotspot200down-38 - GAGAUGCUCAGGGCUCCUGG 20 777
MYOC-hotspot200down-240 - GG AGAUGCUCAGGGCUCCUGG 21 4845
MYOC-hotspot200down-241 - AGGAGAUGCUCAGGGCUCCUGG 22 4846
MYOC-hotspot200down-242 - AAGG AGAUGCUCAGGGCUCCUGG 23 4847
MYOC-hotspot200down-243 - GAAGGAGAUGCUCAGGGCUCCUGG 24 4848
MYOC-hotspot200down-244 - AGAUGCUCAGGGCUCCUG 18 4880
MYOC-hotspot200down-245 - GAGAUGCUCAGGGCUCCUG 19 4881
MYOC-hotspot200down-39 - GG AGAUGCUCAGGGCUCCUG 20 776
MYOC-hotspot200down-246 - AGG AGAUGCUCAGGGCUCCUG 21 4882
MYOC-hotspot200down-247 - AAGG AGAUGCUCAGGGCUCCUG 22 4883
MYOC-hotspot200down-248 - G AAGG AGAUGCUCAGGGCUCCUG 23 4884
MYOC-hotspot200down-249 - AG AAGG AGAUGCUCAGGGCUCCUG 24 4885
MYOC-hotspot200down-250 - CCUGGGGGGAGCAGGCUG 18 4886
MYOC-hotspot200down-251 - UCCUGGGGGGAGCAGGCUG 19 4887
MYOC-hotspot200down-252 - CUCCUGGGGGGAGCAGGCUG 20 2800
MYOC-hotspot200down-253 - GCUCCUGGGGGGAGCAGGCUG 21 4888
MYOC-hotspot200down-254 - GGCUCCUGGGGGGAGCAGGCUG 22 4889
MYOC-hotspot200down-255 - GGGCUCCUGGGGGGAGCAGGCUG 23 4890
MYOC-hotspot200down-256 - AGGGCUCCUGGGGGGAGCAGGCUG 24 4891
MYOC-hotspot200down-257 - GAGAUGCUCAGGGCUCCU 18 4984
MYOC-hotspot200down-258 - GGAGAUGCUCAGGGCUCCU 19 4985
MYOC-hotspot200down-21 - AGGAGAUGCUCAGGGCUCCU 20 775
MYOC-hotspot200down-259 - AAGGAGAUGCUCAGGGCUCCU 21 4986
MYOC-hotspot200down-260 - GAAGGAGAUGCUCAGGGCUCCU 22 4987
MYOC-hotspot200down-261 - AG AAGGAGAUGCUCAGGGCUCCU 23 4988
MYOC-hotspot200down-262 - CAG AAGGAGAUGCUCAGGGCUCCU 24 4989
MYOC-hotspot200down-263 - AUGGCAGAAGGAGAUGCU 18 5009
MYOC-hotspot200down-264 - AAUGGCAGAAGGAGAUGCU 19 5010 MYOC-hotspot200down-265 - CAAUGGCAGAAGGAGAUGCU 20 2797
MYOC-hotspot200down-266 - GCAAUGGCAGAAGGAGAUGCU 21 5011
MYOC-hotspot200down-267 - GGCAAUGGCAGAAGGAGAUGCU 22 5012
MYOC-hotspot200down-268 - AGGCAAUGGCAGAAGGAGAUGCU 23 5013
MYOC-hotspot200down-269 - CAGGCAAUGGCAGAAGGAGAUGCU 24 5014
MYOC-hotspot200down-270 - AUUCAGGAAU UGUAGUCU 18 5022
MYOC-hotspot200down-271 - UAUUCAGGAAUUGUAGUCU 19 5023
MYOC-hotspot200down-272 - CUAU UCAGGAAUUGUAGUCU 20 2808
MYOC-hotspot200down-273 - ACUAUUCAGGAAUUGUAGUCU 21 5024
MYOC-hotspot200down-274 - AACUAUUCAGGAAUUGUAGUCU 22 5025
MYOC-hotspot200down-275 - UAACUAU UCAGGAAUUGUAGUCU 23 5026
MYOC-hotspot200down-276 - CUAACUAUUCAGGAAUUGUAGUCU 24 5027
MYOC-hotspot200down-277 - CUAUUCAGGAAUUGUAGU 18 5041
MYOC-hotspot200down-278 - ACUAU UCAGGAAUUGUAGU 19 5042
MYOC-hotspot200down-279 - AACUAUUCAGGAAU UGUAGU 20 2807
MYOC-hotspot200down-280 - UAACUAU UCAGGAAUUGUAGU 21 5043
MYOC-hotspot200down-281 - CU AACUAUUCAGGAAUUGUAGU 22 5044
MYOC-hotspot200down-282 - UCUAACUAUUCAGGAAUUGUAGU 23 5045
MYOC-hotspot200down-283 - AUCUAACUAUUCAGGAAU UGUAGU 24 5046
MYOC-hotspot200down-284 - GGUCACCAUCUAACUAU U 18 5080
MYOC-hotspot200down-285 - UGGUCACCAUCUAACUAUU 19 5081
MYOC-hotspot200down-286 - AUGGUCACCAUCUAACUAUU 20 2806
MYOC-hotspot200down-287 - CAUGGUCACCAUCUAACUAUU 21 5082
MYOC-hotspot200down-288 - ACAUGGUCACCAUCUAACUAUU 22 5083
MYOC-hotspot200down-289 - AACAUGGUCACCAUCUAACUAUU 23 5084
MYOC-hotspot200down-290 - GAACAUGGUCACCAUCUAACUAUU 24 5085
Table 17A provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 17A
Figure imgf000457_0001
Table 17B provides exemplary targeting domains for the mutational hotspot 477-502 target site in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp downstream from the mutational hotspot 477-502 target site. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 17B
Figure imgf000458_0001
Table 18A provides exemplary targeting domains for correcting a mutation (e.g.,
I477N) in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N), have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 18A
1st Tier
Target
DNA
gRNA Name Targeting Domain Site SEQ
Strand
Length ID NO
MYOC-I477N-1 + GCUGCUGACGGUGUACA 17 909
MYOC-I477N-2 + GCGGUUCUUGAAUGGGA 17 446
MYOC-I477N-3 - GCUUAUGACACAGGCAC 17 451
MYOC-I477N-4 - GAL) UG ACL) ACAACCCCC 17 886
MYOC-I477N-5 + GACGGUAGCAUCUGCUG 17 907
MYOC-I477N-6 - GGAACUCGAACAAACCU 17 884
MYOC-I477N-7 + GGAGGCUUU UCACAUCU 17 445 MYOC-I477N-8 + GUAGCUGCUGACGGUG UACA 20 790
MYOC-I477N-9 + GGCAAAGAGCU UCUUCUCCA 20 448
MYOC-I477N-10 - GCUGUACAGGCAAUGGCAGA 20 771
MYOC-I477N-11 - GUCAACUUUGCUUAUGACAC 20 439
MYOC-I477N-12 - G A A A AG CCUCCAAGCUGUAC 20 769
MYOC-I477N-13 + GACCAUGUUCAAGUUG UCCC 20 441
MYOC-I477N-14 + GGUUCU UGAAUGGGAUGGUC 20 449
MYOC-I477N-15 + GCAAAGAGCUUCU UCUCCAG 20 442
MYOC-I477N-16 + GUUGACGGUAGCAUCUGCUG 20 788
MYOC-I477N-17 - GCCAAUGCCU UCAUCAUCUG 20 768
MYOC-I477N-18 + GCCACAGAUGAUGAAGGCAU 20 792
MYOC-I477N-19 - GGAGAAGAAGCUCUU UGCCU 20 440
Table 18B provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 18B
Figure imgf000459_0001
MYOC-I477N-37 - AUCUGGAACUCGAACAAACC 20 766
MYOC-I477N-38 - CAUGAUUGACUACAACCCCC 20 454
MYOC-I477N-39 + CCCUUCAGCCUGCUCCCCCC 20 785
MYOC-I477N-40 + AGUCAAAGCUGCCUGGGCCC 20 1802
MYOC-I477N-41 + CUUACGGAUGUU UGUCUCCC 20 794
MYOC-I477N-42 - AAGGAGAUGCUCAGGGCUCC 20 774
MYOC-I477N-43 + AAAGCUGCCUGGGCCCUGGC 20 1803
MYOC-I477N-44 + UCAUGCUGCUGUACUUAUAG 20 460
MYOC-I477N-45 + CCAU UGCCUGUACAGCU UGG 20 787
MYOC-I477N-46 + ACU UAUAGCGGUUCUUGAAU 20 462
MYOC-I477N-47 - UCUGGAACUCGAACAAACCU 20 767
MYOC-I477N-48 - AGGAGAUGCUCAGGGCUCCU 20 775
MYOC-I477N-49 + CUGCCAUUGCCUGUACAGCU 20 786
MYOC-I477N-50 + CU UGGAGGCUUUUCACAUCU 20 457
Table 18C provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N) and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 18C
Figure imgf000460_0001
MYOC-I477N-66 - GAAGGGAGAGCCAGCCAGCC 20 782
MYOC-I477N-67 + GGAAAGCAGUCAAAGCUGCC 20 854
MYOC-I477N-68 - GAGAUGCUCAGGGCUCCUGG 20 777
MYOC-I477N-69 - GGAGAUGCUCAGGGCUCCUG 20 776
MYOC-I477N-70 + GAAAGCAGUCAAAGCUGCCU 20 855
Table 18D provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 18D
Figure imgf000461_0001
MYOC-I477N-95 - AAGGGAGAGCCAGCCAGCCA 20 783
MYOC-I477N-96 - AUGGCAGAAGGAGAUGCUCA 20 773
MYOC-I477N-97 - UCCUGGGGGGAGCAGGCUGA 20 780
MYOC-I477N-98 + UGCUGAGGUGUAGCUGCUGA 20 789
MYOC-I477N-99 + UGUGUCAUAAGCAAAGUUGA 20 463
MYOC-I477N-100 - UGGAGAAGAAGCUCUU UGCC 20 455
MYOC-I477N-101 + AGGCAAAGAGCUUCUUCUCC 20 458
MYOC-I477N-102 - UCAGGGCUCCUGGGGGGAGC 20 779
MYOC-I477N-103 + CUGCCUGGGCCCUGGCUGGC 20 1804
MYOC-I477N-104 - AAUGGCAGAAGGAGAUGCUC 20 772
MYOC-I477N-105 + CAAAGAGCUUCUUCUCCAGG 20 459
MYOC-I477N-106 - AGAUGCUCAGGGCUCCUGGG 20 778
Table 19A provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N), have a high level of orthogonality, start with a 5'G, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 19A
Figure imgf000462_0001
Table 19B provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N), have a high level of orthogonality and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase). Table 19B
Figure imgf000463_0001
Table 19C provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N), start with a 5 ' G and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 19C
3rd Tier
Target
DNA
gRNA Name Targeting Domain Site SEQ ID
Strand
Length NO
MYOC-I477N-127 + GCAAAGAGCUUCUUCUCCA 19 3537
MYOC-I477N-9 + GGCAAAGAGCU UCUUCUCCA 20 448
MYOC-I477N-128 + GCUGUACU UAUAGCGGU UC 19 3552
MYOC-I477N-129 + GUUCUUGAAUGGGAUGGU 18 3562
MYOC-I477N-130 + GGU UCUUGAAUGGGAUGGU 19 3563
MYOC-I477N-131 + GU UUGUCUCCCAGGUU UGU 19 3565
MYOC-I477N-132 + GCAUUGGCGACUGACUGCUU 20 2793
MYOC-I477N-133 + GGCAU UGGCGACUGACUGCUU 21 3571 MYOC-I477N-134
Table 19D provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N), and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 19D
Figure imgf000464_0001
Table 19E provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the fifth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N), and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 19E
Figure imgf000464_0002
Length
MYOC-I477N-147 + U U C A AG UUGUCCCAGGCA 18 3879
MYOC-I477N-148 + GU UCAAGUUGUCCCAGGCA 19 3880
MYOC-I477N-149 + UGUUCAAGU UGUCCCAGGCA 20 1858
MYOC-I477N-150 + AUGUUCAAGUUGUCCCAGGCA 21 3881
MYOC-I477N-151 + CAUGUUCAAGUUGUCCCAGGCA 22 3882
MYOC-I477N-152 + CCAUGU UCAAGU UGUCCCAGGCA 23 3883
MYOC-I477N-153 + ACCAUGUUCAAGUUGUCCCAGGCA 24 3884
MYOC-I477N-154 + ACUUAUAGCGGUUCUUGA 18 3906
MYOC-I477N-155 + UACU UAUAGCGGU UCU UGA 19 3907
MYOC-I477N-156 + GUACUUAUAGCGGU UCUUGA 20 1855
MYOC-I477N-157 + UG UACUUAUAGCGGU UCUUGA 21 3908
MYOC-I477N-158 + CUGUACUUAUAGCGGUUCU UGA 22 3909
MYOC-I477N-159 + GCUGUACUUAUAGCGGUUCU UGA 23 3910
MYOC-I477N-160 + UGCUGUACU UAUAGCGGUUCUUGA 24 3911
MYOC-I477N-161 + CU UCAGCCUGCUCCCCCC 18 3956
MYOC-I477N-162 + CCUUCAGCCUGCUCCCCCC 19 3957
MYOC-I477N-39 + CCCUUCAGCCUGCUCCCCCC 20 785
MYOC-I477N-163 + UCCCUUCAGCCUGCUCCCCCC 21 3958
MYOC-I477N-164 + CUCCCUUCAGCCUGCUCCCCCC 22 3959
MYOC-I477N-165 + UCUCCCU UCAGCCUGCUCCCCCC 23 3960
MYOC-I477N-166 + CUCUCCCU UCAGCCUGCUCCCCCC 24 3961
MYOC-I477N-167 + CCUUCAGCCUGCUCCCCC 18 3962
MYOC-I477N-168 + CCCUUCAGCCUGCUCCCCC 19 3963
MYOC-I477N-169 + UCCCU UCAGCCUGCUCCCCC 20 2811
MYOC-I477N-170 + CUCCCUUCAGCCUGCUCCCCC 21 3964
MYOC-I477N-171 + UCUCCCU UCAGCCUGCUCCCCC 22 3965
MYOC-I477N-172 + CUCUCCCU UCAGCCUGCUCCCCC 23 3966
MYOC-I477N-173 + GCUCUCCCU UCAGCCUGCUCCCCC 24 3967
MYOC-I477N-174 + CUGCUCCCCCCAGGAGCC 18 3974
MYOC-I477N-175 + CCUGCUCCCCCCAGGAGCC 19 3975
MYOC-I477N-176 + GCCUGCUCCCCCCAGGAGCC 20 2810
MYOC-I477N-177 + AGCCUGCUCCCCCCAGGAGCC 21 3976
MYOC-I477N-178 + CAGCCUGCUCCCCCCAGGAGCC 22 3977
MYOC-I477N-179 + UCAGCCUGCUCCCCCCAGGAGCC 23 3978
MYOC-I477N-180 + UUCAGCCUGCUCCCCCCAGGAGCC 24 3979
MYOC-I477N-181 + GCAAAGAGCUUCUUCUCC 18 3987
MYOC-I477N-182 + GGCAAAGAGCUUCUUCUCC 19 3988
MYOC-I477N-101 + AGGCAAAGAGCUUCUUCUCC 20 458
MYOC-I477N-183 + CAGGCAAAGAGCUUCU UCUCC 21 3989
MYOC-I477N-184 + CCAGGCAAAGAGCUUCUUCUCC 22 3990
MYOC-I477N-185 + CCCAGGCAAAGAGCU UCUUCUCC 23 3991
MYOC-I477N-186 + UCCCAGGCAAAGAGCUUCU UCUCC 24 3992
MYOC-I477N-187 + UGCCAUUGCCUGUACAGC 18 4011
MYOC-I477N-188 + CUGCCAU UGCCUGUACAGC 19 4012
MYOC-I477N-189 + UCUGCCAU UGCCUGUACAGC 20 2809 MYOC-I477N-190 + UUCUGCCAUUGCCUGUACAGC 21 4013
MYOC-I477N-191 + CUUCUGCCAUUGCCUGUACAGC 22 4014
MYOC-I477N-192 + CCUUCUGCCAUUGCCUG UACAGC 23 4015
MYOC-I477N-193 + UCCUUCUGCCAU UGCCUGUACAGC 24 4016
MYOC-I477N-194 + G A A AG C AG U C A A AG C U G C 18 4052
MYOC-I477N-195 + G G A A AG C AG U C A A AG C U G C 19 4053
MYOC-I477N-196 + UGGAAAGCAGU C A A AG C U G C 20 2812
MYOC-I477N-197 + UUGGAGGCUUU UCACAUC 18 4058
MYOC-I477N-198 + CU UGGAGGCUU UUCACAUC 19 4059
MYOC-I477N-199 + GCUUGGAGGCU UUUCACAUC 20 1860
MYOC-I477N-200 + AGCU UGGAGGCUU UUCACAUC 21 4060
MYOC-I477N-201 + CAGCUUGGAGGCUUUUCACAUC 22 4061
MYOC-I477N-202 + ACAGCU UGGAGGCUUUUCACAUC 23 4062
MYOC-I477N-203 + UACAGCUUGGAGGCUUUUCACAUC 24 4063
MYOC-I477N-204 + GGCAAAGAGCUUCUUCUC 18 4083
MYOC-I477N-205 + AGGCAAAGAGCUUCUUCUC 19 4084
MYOC-I477N-206 + CAGGCAAAGAGCUUCU UCUC 20 1857
MYOC-I477N-207 + CCAGGCAAAGAGCUUCUUCUC 21 4085
MYOC-I477N-208 + CCCAGGCAAAGAGCUUCUUCUC 22 4086
MYOC-I477N-209 + UCCCAGGCAAAGAGCU UCUUCUC 23 4087
MYOC-I477N-210 + GUCCCAGGCAAAGAGCU UCUUCUC 24 4088
MYOC-I477N-211 + UACAAGGUGCCACAGAUG 18 4158
MYOC-I477N-212 + G U AC A AG GUGCCACAGAUG 19 4159
MYOC-I477N-213 + U G U ACAAG G U G CC ACAG AU G 20 2794
MYOC-I477N-214 + G U G U ACAAG GUGCCACAGAUG 21 4160
MYOC-I477N-215 + GGUG UACAAGGUGCCACAGAUG 22 4161
MYOC-I477N-216 + CGGUG UACAAGGUGCCACAGAUG 23 4162
MYOC-I477N-217 + ACGG UGUACAAGGUGCCACAGAUG 24 4163
MYOC-I477N-218 + AGUUGACGGUAGCAUCUG 18 4178
MYOC-I477N-219 + AAGUUGACGGUAGCAUCUG 19 4179
MYOC-I477N-220 + AAAGUUGACGGUAGCAUCUG 20 1853
MYOC-I477N-221 + CAAAGUUGACGGUAGCAUCUG 21 4180
MYOC-I477N-222 + GCAAAGUUGACGGUAGCAUCUG 22 4181
MYOC-I477N-223 + AGCAAAGUUGACGGUAGCAUCUG 23 4182
MYOC-I477N-224 + AAGCAAAGUUGACGGUAGCAUCUG 24 4183
MYOC-I477N-225 + GAGGCUU UUCACAUCUUG 18 4191
MYOC-I477N-226 + GGAGGCUU UUCACAUCU UG 19 4192
MYOC-I477N-227 + UGGAGGCUUUUCACAUCUUG 20 1859
MYOC-I477N-228 + UUGGAGGCUUU UCACAUCUUG 21 4193
MYOC-I477N-229 + CUUGGAGGCUUU UCACAUCUUG 22 4194
MYOC-I477N-230 + GCUUGGAGGCU UUUCACAUCU UG 23 4195
MYOC-I477N-231 + AGCU UGGAGGCUU UUCACAUCUUG 24 4196
MYOC-I477N-232 + GCCAUUGCCUGUACAGCU 18 4265
MYOC-I477N-233 + UGCCAUUGCCUGUACAGCU 19 4266
MYOC-I477N-49 + CUGCCAUUGCCUGUACAGCU 20 786
MYOC-I477N-234 + UCUGCCAU UGCCUGUACAGCU 21 4267 MYOC-I477N-235 + UUCUGCCAUUGCCUGUACAGCU 22 4268
MYOC-I477N-236 + CUUCUGCCAUUGCCUGUACAGCU 23 4269
MYOC-I477N-237 + CCUUCUGCCAUUGCCUGUACAGCU 24 4270
MYOC-I477N-238 + UGGAGGCUUUUCACAUCU 18 4271
MYOC-I477N-239 + UUGGAGGCUUU UCACAUCU 19 4272
MYOC-I477N-50 + CUUGGAGGCU UUUCACAUCU 20 457
MYOC-I477N-240 + GCUUGGAGGCU UUUCACAUCU 21 4273
MYOC-I477N-241 + AGCU UGGAGGCUU UUCACAUCU 22 4274
MYOC-I477N-242 + CAGCUUGGAGGCUUUUCACAUCU 23 4275
MYOC-I477N-243 + ACAGCU UGGAGGCU UUUCACAUCU 24 4276
MYOC-I477N-244 - UGGGGGGAGCAGGCUGAA 18 4370
MYOC-I477N-245 - CUGGGGGGAGCAGGCUGAA 19 4371
MYOC-I477N-94 - CCUGGGGGGAGCAGGCUGAA 20 781
MYOC-I477N-246 - UCCUGGGGGGAGCAGGCUGAA 21 4372
MYOC-I477N-247 - CUCCUGGGGGGAGCAGGCUGAA 22 4373
MYOC-I477N-248 - GCUCCUGGGGGGAGCAGGCUGAA 23 4374
MYOC-I477N-249 - GGCUCCUGGGGGGAGCAGGCUGAA 24 4375
MYOC-I477N-250 - UGUACAGGCAAUGGCAGA 18 4408
MYOC-I477N-251 - CUGUACAGGCAAUGGCAGA 19 4409
MYOC-I477N-10 - GCUGUACAGGCAAUGGCAGA 20 771
MYOC-I477N-252 - AGCUGUACAGGCAAUGGCAGA 21 4410
MYOC-I477N-253 - AAGCUGUACAGGCAAUGGCAGA 22 4411
MYOC-I477N-254 - CAAGCUGUACAGGCAAUGGCAGA 23 4412
MYOC-I477N-255 - CCAAGCUGUACAGGCAAUGGCAGA 24 4413
MYOC-I477N-256 - CUGGGGGGAGCAGGCUGA 18 4453
MYOC-I477N-257 - CCUGGGGGGAGCAGGCUGA 19 4454
MYOC-I477N-97 - UCCUGGGGGGAGCAGGCUGA 20 780
MYOC-I477N-258 - CUCCUGGGGGGAGCAGGCUGA 21 4455
MYOC-I477N-259 - GCUCCUGGGGGGAGCAGGCUGA 22 4456
MYOC-I477N-260 - GGCUCCUGGGGGGAGCAGGCUGA 23 4457
MYOC-I477N-261 - GGGCUCCUGGGGGGAGCAGGCUGA 24 4458
MYOC-I477N-262 - CUCUUUGCCUGGGACAAC 18 4485
MYOC-I477N-263 - GCUCUUUGCCUGGGACAAC 19 4486
MYOC-I477N-264 - AGCUCU UUGCCUGGGACAAC 20 1851
MYOC-I477N-265 - AAGCUCUUUGCCUGGGACAAC 21 4487
MYOC-I477N-266 - GAAGCUCUUUGCCUGGGACAAC 22 4488
MYOC-I477N-267 - AGAAGCUCUUUGCCUGGGACAAC 23 4489
MYOC-I477N-268 - AAGAAGCUCU UUGCCUGGGACAAC 24 4490
MYOC-I477N-269 - CUGGAACUCGAACAAACC 18 4537
MYOC-I477N-270 - UCUGGAACUCGAACAAACC 19 4538
MYOC-I477N-37 - AUCUGGAACUCGAACAAACC 20 766
MYOC-I477N-271 - AUGAUUGACUACAACCCC 18 4569
MYOC-I477N-272 - CAUG AU UG ACU ACAACCCC 19 4570
MYOC-I477N-273 - GCAUGAUUGACUACAACCCC 20 1847
MYOC-I477N-274 - AGCAUGAUUGACUACAACCCC 21 4571
MYOC-I477N-275 - CAGCAUGAUUGACUACAACCCC 22 4572 MYOC-I477N-276 - GCAGCAUGAUUGACUACAACCCC 23 4573
MYOC-I477N-277 - AGCAGCAUGAUUGACUACAACCCC 24 4574
MYOC-I477N-278 - UGAUUGACUACAACCCCC 18 4575
MYOC-I477N-279 - AUGAUUGACUACAACCCCC 19 4576
MYOC-I477N-38 - CAUGAUUGACUACAACCCCC 20 454
MYOC-I477N-280 - GCAUG AU UG ACU ACAACCCCC 21 4577
MYOC-I477N-281 - AGCAUG AU UG ACU ACAACCCCC 22 4578
MYOC-I477N-282 - CAGCAUGAUUGACUACAACCCCC 23 4579
MYOC-I477N-283 - GCAGCAUGAUUGACUACAACCCCC 24 4580
MYOC-I477N-284 - GAGAAGAAGCUCUUUGCC 18 4587
MYOC-I477N-285 - GGAGAAGAAGCUCUUUGCC 19 4588
MYOC-I477N-100 - UGGAGAAGAAGCUCUU UGCC 20 455
MYOC-I477N-286 - CUGGAGAAGAAGCUCUU UGCC 21 4589
MYOC-I477N-287 - CCUGGAGAAGAAGCUCUUUGCC 22 4590
MYOC-I477N-288 - CCCUGGAGAAGAAGCUCUU UGCC 23 4591
MYOC-I477N-289 - CCCCUGGAGAAGAAGCUCUUUGCC 24 4592
MYOC-I477N-290 - GGAGAUGCUCAGGGCUCC 18 4599
MYOC-I477N-291 - AGGAGAUGCUCAGGGCUCC 19 4600
MYOC-I477N-42 - AAGGAGAUGCUCAGGGCUCC 20 774
MYOC-I477N-292 - GAAGGAGAUGCUCAGGGCUCC 21 4601
MYOC-I477N-293 - AG AAGGAGAUGCUCAGGGCUCC 22 4602
MYOC-I477N-294 - CAG AAGGAGAUGCUCAGGGCUCC 23 4603
MYOC-I477N-295 - GCAGAAGGAGAUGCUCAGGGCUCC 24 4604
MYOC-I477N-296 - AAGGGAGAGCCAGCCAGC 18 4618
MYOC-I477N-297 - GAAGGGAGAGCCAGCCAGC 19 4619
MYOC-I477N-298 - UG AAGGGAGAGCCAGCCAGC 20 2802
MYOC-I477N-299 - CUG AAGGGAGAGCCAGCCAGC 21 4620
MYOC-I477N-300 - GCUG AAGGGAGAGCCAGCCAGC 22 4621
MYOC-I477N-301 - GGCUG AAGGGAGAGCCAGCCAGC 23 4622
MYOC-I477N-302 - AGGCUGAAGGGAGAGCCAGCCAGC 24 4623
MYOC-I477N-303 - GGAGAAGAAGCUCUUUGC 18 4630
MYOC-I477N-304 - UGGAGAAGAAGCUCUU UGC 19 4631
MYOC-I477N-305 - CUGGAGAAGAAGCUCUU UGC 20 1850
MYOC-I477N-306 - CCUGGAGAAGAAGCUCUU UGC 21 4632
MYOC-I477N-307 - CCCUGGAGAAGAAGCUCUUUGC 22 4633
MYOC-I477N-308 - CCCCUGGAGAAGAAGCUCUU UGC 23 4634
MYOC-I477N-309 - CCCCCUGGAGAAGAAGCUCUUUGC 24 4635
MYOC-I477N-310 - AGGAGAUGCUCAGGGCUC 18 4660
MYOC-I477N-311 - AAGGAGAUGCUCAGGGCUC 19 4661
MYOC-I477N-312 - GAAGGAGAUGCUCAGGGCUC 20 2798
MYOC-I477N-313 - AG AAGGAGAUGCUCAGGGCUC 21 4662
MYOC-I477N-314 - CAG AAGGAGAUGCUCAGGGCUC 22 4663
MYOC-I477N-315 - GCAG AAGGAGAUGCUCAGGGCUC 23 4664
MYOC-I477N-316 - GGCAGAAGGAGAUGCUCAGGGCUC 24 4665
MYOC-I477N-317 - ACCCUGACCAUCCCAU UC 18 4673
MYOC-I477N-318 - G ACCCUG ACCAUCCCAU UC 19 4674 MYOC-I477N-319 - AGACCCUGACCAUCCCAUUC 20 1846
MYOC-I477N-320 - AAGACCCUGACCAUCCCAUUC 21 4675
MYOC-I477N-321 - CAAGACCCUGACCAUCCCAUUC 22 4676
MYOC-I477N-322 - GCAAGACCCUGACCAUCCCAUUC 23 4677
MYOC-I477N-323 - AGCAAGACCCUGACCAUCCCAUUC 24 4678
MYOC-I477N-324 - CUGUACAGGCAAUGGCAG 18 4720
MYOC-I477N-325 - GCUGUACAGGCAAUGGCAG 19 4721
MYOC-I477N-326 - AGCUGUACAGGCAAUGGCAG 20 2796
MYOC-I477N-327 - AAGCUGUACAGGCAAUGGCAG 21 4722
MYOC-I477N-328 - C A AG CUGUACAGGCAAUGG C AG 22 4723
MYOC-I477N-329 - CCAAGCUGUACAGGCAAUGGCAG 23 4724
MYOC-I477N-330 - UCCAAGCUGUACAGGCAAUGGCAG 24 4725
MYOC-I477N-331 - GACUACAACCCCCUGGAG 18 4738
MYOC-I477N-332 - UGACUACAACCCCCUGGAG 19 4739
MYOC-I477N-333 - UUGACUACAACCCCCUGGAG 20 1849
MYOC-I477N-334 - AUUGACUACAACCCCCUGGAG 21 4740
MYOC-I477N-335 - GAU UGACUACAACCCCCUGGAG 22 4741
MYOC-I477N-336 - UGAUUGACUACAACCCCCUGGAG 23 4742
MYOC-I477N-337 - AUGAUUGACUACAACCCCCUGGAG 24 4743
MYOC-I477N-338 - GGGGGAGCAGGCUGAAGG 18 4806
MYOC-I477N-339 - GGGGGGAGCAGGCUGAAGG 19 4807
MYOC-I477N-340 - UGGGGGGAGCAGGCUGAAGG 20 2801
MYOC-I477N-341 - CUGGGGGGAGCAGGCUGAAGG 21 4808
MYOC-I477N-342 - CCUGGGGGGAGCAGGCUGAAGG 22 4809
MYOC-I477N-343 - UCCUGGGGGGAGCAGGCUGAAGG 23 4810
MYOC-I477N-344 - CUCCUGGGGGGAGCAGGCUGAAGG 24 4811
MYOC-I477N-345 - GCUCCUGGGGGGAGCAGG 18 4818
MYOC-I477N-346 - GGCUCCUGGGGGGAGCAGG 19 4819
MYOC-I477N-347 - GGGCUCCUGGGGGGAGCAGG 20 2799
MYOC-I477N-348 - AGGGCUCCUGGGGGGAGCAGG 21 4820
MYOC-I477N-349 - CAGGGCUCCUGGGGGGAGCAGG 22 4821
MYOC-I477N-350 - UCAGGGCUCCUGGGGGGAGCAGG 23 4822
MYOC-I477N-351 - CUCAGGGCUCCUGGGGGGAGCAGG 24 4823
MYOC-I477N-352 - AUGCUCAGGGCUCCUGGG 18 4824
MYOC-I477N-353 - GAUGCUCAGGGCUCCUGGG 19 4825
MYOC-I477N-106 - AG AUGCUCAGGGCUCCUGGG 20 778
MYOC-I477N-354 - GAG AUGCUCAGGGCUCCUGGG 21 4826
MYOC-I477N-355 - GG AG AUGCUCAGGGCUCCUGGG 22 4827
MYOC-I477N-356 - AGG AG AUGCUCAGGGCUCCUGGG 23 4828
MYOC-I477N-357 - AAGGAGAUGCUCAGGGCUCCUGGG 24 4829
MYOC-I477N-358 - AAGCUGUACAGGCAAUGG 18 4837
MYOC-I477N-359 - CAAGCUGUACAGGCAAUGG 19 4838
MYOC-I477N-360 - CCAAGCUGUACAGGCAAUGG 20 2795
MYOC-I477N-361 - UCCAAGCUGUACAGGCAAUGG 21 4839
MYOC-I477N-362 - CUCCAAGCUGUACAGGCAAUGG 22 4840
MYOC-I477N-363 - CCUCCAAGCUGUACAGGCAAUGG 23 4841 MYOC-I477N-364 - GCCUCCAAGCUGUACAGGCAAUGG 24 4842
MYOC-I477N-365 - GAUGCUCAGGGCUCCUGG 18 4843
MYOC-I477N-366 - AGAUGCUCAGGGCUCCUGG 19 4844
MYOC-I477N-68 - GAGAUGCUCAGGGCUCCUGG 20 777
MYOC-I477N-367 - GG AGAUGCUCAGGGCUCCUGG 21 4845
MYOC-I477N-368 - AGGAGAUGCUCAGGGCUCCUGG 22 4846
MYOC-I477N-369 - AAGG AGAUGCUCAGGGCUCCUGG 23 4847
MYOC-I477N-370 - GAAGGAGAUGCUCAGGGCUCCUGG 24 4848
MYOC-I477N-371 - AUUGACUACAACCCCCUG 18 4874
MYOC-I477N-372 - GAU UG ACU ACAACCCCCUG 19 4875
MYOC-I477N-373 - UGAUUGACUACAACCCCCUG 20 1848
MYOC-I477N-374 - AUGAU UGACU ACAACCCCCUG 21 4876
MYOC-I477N-375 - CAUGAUUGACUACAACCCCCUG 22 4877
MYOC-I477N-376 - GCAUGAUUGACUACAACCCCCUG 23 4878
MYOC-I477N-377 - AGCAUGAU UGACU ACAACCCCCUG 24 4879
MYOC-I477N-378 - AGAUGCUCAGGGCUCCUG 18 4880
MYOC-I477N-379 - GAGAUGCUCAGGGCUCCUG 19 4881
MYOC-I477N-69 - GG AGAUGCUCAGGGCUCCUG 20 776
MYOC-I477N-380 - AGG AGAUGCUCAGGGCUCCUG 21 4882
MYOC-I477N-381 - AAGG AGAUGCUCAGGGCUCCUG 22 4883
MYOC-I477N-382 - GAAGG AGAUGCUCAGGGCUCCUG 23 4884
MYOC-I477N-383 - AGAAGGAGAUGCUCAGGGCUCCUG 24 4885
MYOC-I477N-384 - CCUGGGGGGAGCAGGCUG 18 4886
MYOC-I477N-385 - UCCUGGGGGGAGCAGGCUG 19 4887
MYOC-I477N-386 - CUCCUGGGGGGAGCAGGCUG 20 2800
MYOC-I477N-387 - GCUCCUGGGGGGAGCAGGCUG 21 4888
MYOC-I477N-388 - GGCUCCUGGGGGGAGCAGGCUG 22 4889
MYOC-I477N-389 - GGGCUCCUGGGGGGAGCAGGCUG 23 4890
MYOC-I477N-390 - AGGGCUCCUGGGGGGAGCAGGCUG 24 4891
MYOC-I477N-391 - CAUCAAGCUCUCCAAGAU 18 4939
MYOC-I477N-392 - ACAUCAAGCUCUCCAAGAU 19 4940
MYOC-I477N-393 - GACAUCAAGCUCUCCAAGAU 20 1852
MYOC-I477N-394 - UGACAUCAAGCUCUCCAAGAU 21 4941
MYOC-I477N-395 - AUGACAUCAAGCUCUCCAAGAU 22 4942
MYOC-I477N-396 - UAUGACAUCAAGCUCUCCAAGAU 23 4943
MYOC-I477N-397 - UUAUGACAUCAAGCUCUCCAAGAU 24 4944
MYOC-I477N-398 - UGGAACUCGAACAAACCU 18 4978
MYOC-I477N-399 - CUGGAACUCGAACAAACCU 19 4979
MYOC-I477N-47 - UCUGGAACUCGAACAAACCU 20 767
MYOC-I477N-400 - GAGAUGCUCAGGGCUCCU 18 4984
MYOC-I477N-401 - GGAGAUGCUCAGGGCUCCU 19 4985
MYOC-I477N-48 - AGGAGAUGCUCAGGGCUCCU 20 775
MYOC-I477N-402 - AAGGAGAUGCUCAGGGCUCCU 21 4986
MYOC-I477N-403 - GAAGG AG AUGCUCAGGGCUCCU 22 4987
MYOC-I477N-404 - AG AAGGAGAUGCUCAGGGCUCCU 23 4988
MYOC-I477N-405 - CAGAAGGAGAUGCUCAGGGCUCCU 24 4989 MYOC-I477N-406 - AUGGCAGAAGGAGAUGCU 18 5009
MYOC-I477N-407 - AAUGGCAGAAGGAGAUGCU 19 5010
MYOC-I477N-408 - CAAUGGCAGAAGGAGAUGCU 20 2797
MYOC-I477N-409 - GCAAUGGCAGAAGGAGAUGCU 21 5011
MYOC-I477N-410 - GGCAAUGGCAGAAGGAGAUGCU 22 5012
MYOC-I477N-411 - AGGCAAUGGCAGAAGGAGAUGCU 23 5013
MYOC-I477N-412 - CAGGCAAUGGCAGAAGGAGAUGCU 24 5014
Table 20A provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N), have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 20A
Figure imgf000471_0001
Table 20B provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 20B
Figure imgf000471_0002
Table 20C provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N) and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 20C
Figure imgf000472_0001
Table 20D provides exemplary targeting domains for correcting a mutation (e.g., I477N) in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., I477N). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 20D
Figure imgf000472_0002
Table 21A provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L), have a high level of orthogonality and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 21A
Figure imgf000473_0001
Table 21B provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L) and have a high level of orthogonality. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 21B
Figure imgf000474_0001
MYOC-P370L-64 - CUCGGGGAGCCUCUAUU UCC 20 762
MYOC-P370L-65 - CAAACUGAACCCAGAGAAUC 20 765
MYOC-P370L-66 - ACGGGUGCUGUGGUGUACUC 20 760
MYOC-P370L-67 + UGUUCGAGUUCCAGAU UCUC 20 795
MYOC-P370L-68 + CUCAUAUCUUAUGACAGUUC 20 422
MYOC-P370L-69 + CGGUGCUGUAAAUGACCCAG 20 417
MYOC-P370L-70 + ACUCAGCGCCCUGGAAAUAG 20 802
MYOC-P370L-71 + AAGAAUACGGGAACUGUCCG 20 419
MYOC-P370L-72 - CGGGUGCUGUGGUGUACUCG 20 761
MYOC-P370L-73 - CAGU UCCCGUAUUCUUGGGG 20 410
MYOC-P370L-74 - CACGGACAUUGACUUGGCUG 20 412
MYOC-P370L-75 - ACUGGAAAGCACGGGUGCUG 20 758
MYOC-P370L-76 + AAUGGCACCU UUGGCCUCAU 20 416
MYOC-P370L-77 - UGGCUACACGGACAUUGACU 20 411
MYOC-P370L-78 - CACGGGUGCUGUGGUGUACU 20 759
MYOC-P370L-79 - UCUGGAACUCGAACAAACCU 20 767
MYOC-P370L-80 + CCCGUGCU UUCCAGUGGCCU 20 804
MYOC-P370L-81 - CUAAGGU UCACAUACUGCCU 20 754
MYOC-P370L-82 - ACGGACAGUUCCCGUAUUCU 20 408
MYOC-P370L-83 - CGGACAGUUCCCGUAUUCUU 20 409
Table 21C provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L) and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 21C
Figure imgf000475_0001
MYOC-P370L-94
Table 21D provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. pyogenes Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 21D
Figure imgf000476_0001
Table 22A provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the first tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L), have a high level of
orthogonality, start with a 5'G, and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 22A
Figure imgf000477_0001
Table 22B provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the second tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L), have a high level of orthogonality and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 22B
2nd Tier
Target
DNA
gRNA Name Targeting Domain Site SEQ ID
Strand
Length NO
MYOC-P370L-133 + CAAUGUCCGUGUAGCCACCCC 21 3634
MYOC-P370L-134 + U C A A UGUCCG UGUAGCCACCCC 22 3635 MYOC-P370L-135 + AGUCAAUG UCCG UG U AGCCACCCC 24 3636
MYOC-P370L-136 + CUGUCCGUGGUAGCCAGCUCC 21 3638
MYOC-P370L-137 + ACUGUCCGUGGUAGCCAGCUCC 22 3639
MYOC-P370L-138 + AACUGUCCG UGGUAGCCAGCUCC 23 3640
MYOC-P370L-139 + CGCCCUGGAAAUAGAGGCUCC 21 3643
MYOC-P370L-140 + AGCGCCCUGGAAAUAGAGGCUCC 23 3644
MYOC-P370L-141 + CAGCGCCCUGGAAAUAGAGGCUCC 24 3645
MYOC-P370L-142 + UAGGCAGUAUGUGAACCUUAG 21 3662
MYOC-P370L-143 + CUAGGCAGUAUGUGAACCUUAG 22 3663
MYOC-P370L-144 + CCUAGGCAGUAUGUGAACCU UAG 23 3664
MYOC-P370L-145 + U UUGU UCGAGU UCCAGAUUCU 21 3678
MYOC-P370L-146 + AGGUU UGUUCGAGUUCCAGAUUCU 24 3679
MYOC-P370L-147 + AUGUU UGUCUCCCAGGUU UGU 21 3690
MYOC-P370L-148 + CGGAUGU UUGUCUCCCAGGUUUGU 24 3691
MYOC-P370L-149 - CUGCCUAGGCCACUGGAAAGC 21 3729
MYOC-P370L-150 - ACUGCCUAGGCCACUGGAAAGC 22 3730
MYOC-P370L-151 - UACUGCCUAGGCCACUGGAAAGC 23 3731
MYOC-P370L-152 - AU ACUGCCUAGGCCACUGGAAAGC 24 3732
MYOC-P370L-153 - AGAACUGUCAUAAGAUAUGAG 21 3769
MYOC-P370L-154 - CAGAACUGUCAUAAGAUAUGAG 22 3770
MYOC-P370L-155 - CCAGAACUGUCAUAAGAUAUGAG 23 3771
MYOC-P370L-156 - UCCAGAACUGUCAUAAGAUAUGAG 24 3772
MYOC-P370L-157 - CGGGGAGCCUCUAUUUCCAGGGCG 24 3780
MYOC-P370L-158 - UGGCUGUGGAUGAAGCAGGCCU 22 3800
MYOC-P370L-159 - UUGGCUGUGGAUGAAGCAGGCCU 23 3801
MYOC-P370L-160 - CU UGGCUGUGGAUGAAGCAGGCCU 24 3802
MYOC-P370L-161 - UACACGGACAUUGACUUGGCU 21 3805
MYOC-P370L-162 - CUACACGGACAUUGACU UGGCU 22 3806
MYOC-P370L-163 - CACGGACAGUUCCCGUAUUCU 21 3808
MYOC-P370L-164 - CCACGG ACAG U U CCCG U AU U CU 22 3809
MYOC-P370L-165 - ACCACGGACAGUUCCCGUAUUCU 23 3810
MYOC-P370L-166 - U ACCACGG ACAG U UCCCG U AU U CU 24 3811
Table 22C provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L), start with a 5 ' G and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single- stranded break (Cas9 nickase).
Table 22C
3rd Tier Target
DNA
gRNA Name Targeting Domain Site SEQ ID
Strand
Length NO
MYOC-P370L-167 + GUCCGUGGUAGCCAGCUCC 19 3540
MYOC-P370L-168 + GCCCUGGAAAUAGAGGCUCC 20 3542
MYOC-P370L-169 + GCAGUAUGUGAACCU UAG 18 3554
MYOC-P370L-170 + GGCAGUAUGUGAACCU UAG 19 3555
MYOC-P370L-171 + GUUCGAGUUCCAGAUUCU 18 3559
MYOC-P370L-172 + GUUUGUCUCCCAGG UUUGU 19 3565
MYOC-P370L-173 + GCAU UGGCGACUGACUGCUU 20 2793
MYOC-P370L-174 + GGCAUUGGCGACUGACUGCUU 21 3571
MYOC-P370L-175 + GAAGGCAUUGGCGACUGACUGCUU 24 3572
MYOC-P370L-176 - GUCCUCUCCAAACUGAACCCA 21 3573
MYOC-P370L-177 - GCCUAGGCCACUGGAAAGC 19 3579
MYOC-P370L-178 - GAACUGUCAUAAGAUAUGAG 20 1807
MYOC-P370L-179 - GCCUCUAU U UCCAGGGCG 18 3592
MYOC-P370L-180 - GAGCCUCUAU UUCCAGGGCG 20 3593
MYOC-P370L-181 - GCUGUGGAUGAAGCAGGCCU 20 1819
MYOC-P370L-182 - GGACAGU UCCCGUAUUCU 18 3604
Table 22D provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L), and PAM is NNGRRT. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 22D
Figure imgf000479_0001
MYOC-P370L-192 + UUUGUCUCCCAGGUUUGU 18 3689
MYOC-P370L-193 + UGU UUGUCUCCCAGGUUUGU 20 2792
MYOC-P370L-194 + AUUGGCGACUGACUGCUU 18 3695
MYOC-P370L-195 + CAU UGGCGACUGACUGCUU 19 3696
MYOC-P370L-196 + AGGCAU UGGCGACUGACUGCUU 22 3697
MYOC-P370L-197 + AAGGCAUUGGCGACUGACUGCUU 23 3698
MYOC-P370L-198 - CUCUCCAAACUGAACCCA 18 3699
MYOC-P370L-199 - CCUCUCCAAACUGAACCCA 19 3700
MYOC-P370L-200 - UCCUCUCCAAACUGAACCCA 20 3701
MYOC-P370L-201 - UGUCCUCUCCAAACUGAACCCA 22 3702
MYOC-P370L-202 - UUGUCCUCUCCAAACUGAACCCA 23 3703
MYOC-P370L-203 - AUUGUCCUCUCCAAACUGAACCCA 24 3704
MYOC-P370L-204 - CCUAGGCCACUGGAAAGC 18 3727
MYOC-P370L-205 - UGCCUAGGCCACUGGAAAGC 20 3728
MYOC-P370L-206 - ACUG UCAU AAG AU AUG AG 18 3767
MYOC-P370L-207 - AACUGUCAUAAGAUAUGAG 19 3768
MYOC-P370L-208 - AGCCUCUAUU UCCAGGGCG 19 3779
MYOC-P370L-209 - UGUGGAUGAAGCAGGCCU 18 3798
MYOC-P370L-210 - CUGUGGAUGAAGCAGGCCU 19 3799
MYOC-P370L-211 - ACGGACAUUGACUUGGCU 18 3803
MYOC-P370L-212 - CACGGACAUUGACUUGGCU 19 3804
MYOC-P370L-213 - ACACGGACAUUGACU UGGCU 20 1817
MYOC-P370L-214 - CGGACAG U U CCCG U AU UCU 19 3807
MYOC-P370L-82 - ACGGACAGU UCCCGUAU UCU 20 408
Table 22E provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the fifth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L), and PAM is NNGRRV. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a S. aureus Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 22E
Figure imgf000480_0001
MYOC-P370L-220 + UUCUGGACUCAGCGCCCUGGAAA 23 3853
MYOC-P370L-221 + GUUCUGGACUCAGCGCCCUGGAAA 24 3854
MYOC-P370L-222 + CUCUGGGU UCAGUUUGGA 18 3892
MYOC-P370L-223 + UCUCUGGG UUCAGUU UGGA 19 3893
MYOC-P370L-224 + UUCUCUGGGUUCAGU UUGGA 20 3894
MYOC-P370L-225 + AUUCUCUGGGUUCAGU UUGGA 21 3895
MYOC-P370L-226 + GAUUCUCUGGGUUCAGUU UGGA 22 3896
MYOC-P370L-227 + AGAUUCUCUGGGUUCAGUUUGGA 23 3897
MYOC-P370L-228 + CAGAUUCUCUGGGUUCAGUU UGGA 24 3898
MYOC-P370L-229 + GUAGCCACCCCAAGAAUA 18 3912
MYOC-P370L-230 + UGUAGCCACCCCAAGAAUA 19 3913
MYOC-P370L-19 + GUGUAGCCACCCCAAGAAUA 20 390
MYOC-P370L-231 + CG U G U AG CCACCCCA AG A AU A 21 3914
MYOC-P370L-232 + CCG UGUAGCCACCCCAAGAAUA 22 3915
MYOC-P370L-233 + UCCG UGUAGCCACCCCAAGAAUA 23 3916
MYOC-P370L-234 + GUCCGUGUAGCCACCCCAAGAAUA 24 3917
MYOC-P370L-235 + UAGCCACCCCAAGAAUAC 18 3944
MYOC-P370L-236 + GUAGCCACCCCAAGAAUAC 19 3945
MYOC-P370L-58 + UG UAGCCACCCCAAGAAUAC 20 418
MYOC-P370L-237 + G U G U AG CCACCCCA AG A AU AC 21 3946
MYOC-P370L-238 + CGUG UAGCCACCCCAAGAAUAC 22 3947
MYOC-P370L-239 + CCGUGUAGCCACCCCAAGAAUAC 23 3948
MYOC-P370L-240 + UCCGUGUAGCCACCCCAAGAAUAC 24 3949
MYOC-P370L-241 + UCGGUGCUGUAAAUGACC 18 3950
MYOC-P370L-242 + AUCGGUGCUGUAAAUGACC 19 3951
MYOC-P370L-243 + CAUCGGUGCUGUAAAUGACC 20 1825
MYOC-P370L-244 + UCAUCGGUGCUGUAAAUGACC 21 3952
MYOC-P370L-245 + CUCAUCGGUGCUGUAAAUGACC 22 3953
MYOC-P370L-246 + CCUCAUCGGUGCUGUAAAUGACC 23 3954
MYOC-P370L-247 + GCCUCAUCGGUGCUGUAAAUGACC 24 3955
MYOC-P370L-248 + GUUCUGGACUCAGCGCCC 18 3968
MYOC-P370L-249 + AGUUCUGGACUCAGCGCCC 19 3969
MYOC-P370L-60 + CAGUUCUGGACUCAGCGCCC 20 801
MYOC-P370L-250 + ACAGUUCUGGACUCAGCGCCC 21 3970
MYOC-P370L-251 + GACAGU UCUGGACUCAGCGCCC 22 3971
MYOC-P370L-252 + UGACAGUUCUGGACUCAGCGCCC 23 3972
MYOC-P370L-253 + AUGACAGU UCUGGACUCAGCGCCC 24 3973
MYOC-P370L-254 + AGUUCUGGACUCAGCGCC 18 3980
MYOC-P370L-255 + CAGU UCUGGACUCAGCGCC 19 3981
MYOC-P370L-256 + ACAGUUCUGGACUCAGCGCC 20 3982
MYOC-P370L-257 + GACAGU UCUGGACUCAGCGCC 21 3983
MYOC-P370L-258 + UGACAGUUCUGGACUCAGCGCC 22 3984
MYOC-P370L-259 + AUGACAGU UCUGGACUCAGCGCC 23 3985
MYOC-P370L-260 + UAUGACAGUUCUGGACUCAGCGCC 24 3986
MYOC-P370L-261 + GUCCGUGGUAGCCAGCUC 18 4071
MYOC-P370L-262 + UGUCCGUGGUAGCCAGCUC 19 4072 MYOC-P370L-263 + CUGUCCGUGGUAGCCAGCUC 20 1822
MYOC-P370L-264 + ACUGUCCG UGGUAGCCAGCUC 21 4073
MYOC-P370L-265 + AACUGUCCGUGGUAGCCAGCUC 22 4074
MYOC-P370L-266 + GAACUG UCCGUGGUAGCCAGCUC 23 4075
MYOC-P370L-267 + GGAACUGUCCGUGGUAGCCAGCUC 24 4076
MYOC-P370L-268 + UUCUCUGGGUUCAGUU UG 18 4197
MYOC-P370L-269 + AUUCUCUGGGU UCAGUUUG 19 4198
MYOC-P370L-270 + GAUUCUCUGGGUUCAG UUUG 20 4199
MYOC-P370L-271 + AGAUUCUCUGGG UUCAGUU UG 21 4200
MYOC-P370L-272 + CAGAU UCUCUGGGUUCAGUUUG 22 4201
MYOC-P370L-273 + CCAGAUUCUCUGGGUUCAGUU UG 23 4202
MYOC-P370L-274 + UCCAGAU UCUCUGGGUUCAGUU UG 24 4203
MYOC-P370L-275 + UGUAGCCACCCCAAGAAU 18 4211
MYOC-P370L-276 + GUGUAGCCACCCCAAGAAU 19 4212
MYOC-P370L-277 + CG U G U AG CC ACCCC A AG A A U 20 1823
MYOC-P370L-278 + CCG U G U AGCCACCCCAAG AAU 21 4213
MYOC-P370L-279 + UCCG UGUAGCCACCCCAAGAAU 22 4214
MYOC-P370L-280 + G U CCG U G U AG CCACCCCA AG A AU 23 4215
MYOC-P370L-281 + UGUCCGUGUAG CCACCCCA AG AAU 24 4216
MYOC-P370L-282 + CAGUGGCCUAGGCAGUAU 18 4231
MYOC-P370L-283 + CCAGUGGCCUAGGCAGUAU 19 4232
MYOC-P370L-284 + UCCAGUGGCCUAGGCAG UAU 20 4233
MYOC-P370L-285 + UUCCAGUGGCCUAGGCAGUAU 21 4234
MYOC-P370L-286 + U UUCCAGUGGCCUAGGCAGUAU 22 4235
MYOC-P370L-287 + CU UUCCAGUGGCCUAGGCAGUAU 23 4236
MYOC-P370L-288 + GCUUUCCAGUGGCCUAGGCAGUAU 24 4237
MYOC-P370L-289 + UAGGCAG UAUGUGAACCU 18 4258
MYOC-P370L-290 + CUAGGCAGUAUGUGAACCU 19 4259
MYOC-P370L-291 + CCUAGGCAGUAUGUGAACCU 20 4260
MYOC-P370L-292 + GCCUAGGCAGUAUGUGAACCU 21 4261
MYOC-P370L-293 + GGCCUAGGCAGUAUGUGAACCU 22 4262
MYOC-P370L-294 + UGGCCUAGGCAGUAUGUGAACCU 23 4263
MYOC-P370L-295 + GUGGCCUAGGCAGUAUGUGAACCU 24 4264
MYOC-P370L-296 + AGAU UCUCUGGGUUCAGU 18 4290
MYOC-P370L-297 + CAGAUUCUCUGGGUUCAGU 19 4291
MYOC-P370L-298 + CCAGAUUCUCUGGGUUCAGU 20 4292
MYOC-P370L-299 + UCCAGAU UCUCUGGGUUCAGU 21 4293
MYOC-P370L-300 + UUCCAGAUUCUCUGGGU UCAGU 22 4294
MYOC-P370L-301 + GUUCCAGAUUCUCUGGGUUCAGU 23 4295
MYOC-P370L-302 + AGUUCCAGAUUCUCUGGGUUCAGU 24 4296
MYOC-P370L-303 + UCAUAUCUUAUGACAGUU 18 4337
MYOC-P370L-304 + CUCAUAUCU UAUGACAGUU 19 4338
MYOC-P370L-305 + GCUCAUAUCU UAUGACAGUU 20 1821
MYOC-P370L-306 + AGCUCAUAUCUUAUGACAGUU 21 4339
MYOC-P370L-307 + CAGCUCAUAUCUUAUGACAGU U 22 4340
MYOC-P370L-308 + UCAGCUCAUAUCUUAUGACAGUU 23 4341 MYOC-P370L-309 + UUCAGCUCAUAUCUUAUGACAGU U 24 4342
MYOC-P370L-310 + GAUUCUCUGGGUUCAGUU 18 4343
MYOC-P370L-311 + AGAU UCUCUGGGUUCAGU U 19 4344
MYOC-P370L-118 + CAGAUUCUCUGGGU UCAGUU 20 797
MYOC-P370L-312 + CCAGAUUCUCUGGGUUCAGUU 21 4345
MYOC-P370L-313 + UCCAGAUUCUCUGGGUUCAGU U 22 4346
MYOC-P370L-314 + UUCCAGAUUCUCUGGGUUCAGUU 23 4347
MYOC-P370L-315 + GUUCCAGAUUCUCUGGGUUCAGUU 24 4348
MYOC-P370L-316 - GCCAUUGUCCUCUCCAAA 18 4356
MYOC-P370L-317 - UGCCAUUGUCCUCUCCAAA 19 4357
MYOC-P370L-318 - G U GCCAU UG U CCU CU CCAAA 20 4358
MYOC-P370L-319 - GGUGCCAUUGUCCUCUCCAAA 21 4359
MYOC-P370L-320 - AGGUGCCAU UGUCCUCUCCAAA 22 4360
MYOC-P370L-321 - AAGGUGCCAUUGUCCUCUCCAAA 23 4361
MYOC-P370L-322 - AAAGGUGCCAUUGUCCUCUCCAAA 24 4362
MYOC-P370L-323 - GAGCUGAAUACCGAGACA 18 4389
MYOC-P370L-324 - UGAGCUGAAUACCGAGACA 19 4390
MYOC-P370L-325 - AUGAGCUGAAUACCGAGACA 20 1809
MYOC-P370L-326 - UAUGAGCUGAAUACCGAGACA 21 4391
MYOC-P370L-327 - AU AUGAGCUGAAUACCGAGACA 22 4392
MYOC-P370L-328 - GAUAUGAGCUGAAUACCGAGACA 23 4393
MYOC-P370L-329 - AGAUAUGAGCUGAAUACCGAGACA 24 4394
MYOC-P370L-330 - CACAUACUGCCUAGGCCA 18 4395
MYOC-P370L-331 - UCACAUACUGCCUAGGCCA 19 4396
MYOC-P370L-332 - UUCACAUACUGCCUAGGCCA 20 4397
MYOC-P370L-333 - GUUCACAUACUGCCUAGGCCA 21 4398
MYOC-P370L-334 - GGUUCACAUACUGCCUAGGCCA 22 4399
MYOC-P370L-335 - AGGUUCACAUACUGCCUAGGCCA 23 4400
MYOC-P370L-336 - AAGGU UCACAUACUGCCUAGGCCA 24 4401
MYOC-P370L-337 - AGACAGUGAAGGCUGAGA 18 4433
MYOC-P370L-338 - GAGACAGUGAAGGCUGAGA 19 4434
MYOC-P370L-112 - CGAGACAGUGAAGGCUGAGA 20 405
MYOC-P370L-339 - CCG AGACAGUGAAGGCUGAGA 21 4435
MYOC-P370L-340 - ACCGAGACAGUGAAGGCUGAGA 22 4436
MYOC-P370L-341 - UACCG AGACAGUGAAGGCUGAGA 23 4437
MYOC-P370L-342 - AUACCGAGACAGUGAAGGCUGAGA 24 4438
MYOC-P370L-343 - UAAGAUAUGAGCUGAAUA 18 4465
MYOC-P370L-344 - AUAAGAUAUGAGCUGAAUA 19 4466
MYOC-P370L-345 - CAUAAGAUAUGAGCUGAAUA 20 1808
MYOC-P370L-346 - UCAUAAGAUAUGAGCUGAAUA 21 4467
MYOC-P370L-347 - GUCAUAAGAUAUGAGCUGAAUA 22 4468
MYOC-P370L-348 - UG UCAUAAGAUAUGAGCUGAAUA 23 4469
MYOC-P370L-349 - CUGUCAUAAGAUAUGAGCUGAAUA 24 4470
MYOC-P370L-350 - UCUGGAACUCGAACAAAC 18 4478
MYOC-P370L-351 - AUCUGGAACUCGAACAAAC 19 4479
MYOC-P370L-352 - AAUCUGGAACUCGAACAAAC 20 4480 MYOC-P370L-353 - GAAUCUGGAACUCGAACAAAC 21 4481
MYOC-P370L-354 - AGAAUCUGGAACUCGAACAAAC 22 4482
MYOC-P370L-355 - GAGAAUCUGGAACUCGAACAAAC 23 4483
MYOC-P370L-356 - AGAGAAUCUGGAACUCGAACAAAC 24 4484
MYOC-P370L-357 - ACCCAGAGAAUCUGGAAC 18 4491
MYOC-P370L-358 - AACCCAGAGAAUCUGGAAC 19 4492
MYOC-P370L-359 - GAACCCAGAGAAUCUGGAAC 20 4493
MYOC-P370L-360 - UGAACCCAGAGAAUCUGGAAC 21 4494
MYOC-P370L-361 - CUGAACCCAGAGAAUCUGGAAC 22 4495
MYOC-P370L-362 - ACUGAACCCAGAGAAUCUGGAAC 23 4496
MYOC-P370L-363 - AACUGAACCCAGAGAAUCUGGAAC 24 4497
MYOC-P370L-364 - ACAUACUGCCUAGGCCAC 18 4505
MYOC-P370L-365 - CACAUACUGCCUAGGCCAC 19 4506
MYOC-P370L-56 - UCACAUACUGCCUAGGCCAC 20 755
MYOC-P370L-366 - UUCACAUACUGCCUAGGCCAC 21 4507
MYOC-P370L-367 - GUUCACAUACUGCCUAGGCCAC 22 4508
MYOC-P370L-368 - GGUUCACAUACUGCCUAGGCCAC 23 4509
MYOC-P370L-369 - AGGUUCACAUACUGCCUAGGCCAC 24 4510
MYOC-P370L-370 - UAUUCUUGGGGUGGCUAC 18 4517
MYOC-P370L-371 - GUAUUCUUGGGGUGGCUAC 19 4518
MYOC-P370L-372 - CGUAU UCUUGGGGUGGCUAC 20 1816
MYOC-P370L-373 - CCGUAUUCU UGGGGUGGCUAC 21 4519
MYOC-P370L-374 - CCCGUAU UCU UGGGGUGGCUAC 22 4520
MYOC-P370L-375 - UCCCGUAU UCUUGGGG UGGCUAC 23 4521
MYOC-P370L-376 - UUCCCGUAUUCUUGGGGUGGCUAC 24 4522
MYOC-P370L-377 - ACGGGUGCUGUGGUGUAC 18 4530
MYOC-P370L-378 - CACGGGUGCUGUGGUGUAC 19 4531
MYOC-P370L-379 - GCACGGGUGCUGUGGUGUAC 20 4532
MYOC-P370L-380 - AGCACGGGUGCUGUGGUGUAC 21 4533
MYOC-P370L-381 - AAGCACGGGUGCUG UGGUGUAC 22 4534
MYOC-P370L-382 - AAAGCACGGGUGCUGUGGUGUAC 23 4535
MYOC-P370L-383 - GAAAGCACGGGUGCUGUGGUGUAC 24 4536
MYOC-P370L-384 - CUGGAACUCGAACAAACC 18 4537
MYOC-P370L-385 - UCUGGAACUCGAACAAACC 19 4538
MYOC-P370L-59 - AUCUGGAACUCGAACAAACC 20 766
MYOC-P370L-386 - AAUCUGGAACUCGAACAAACC 21 4539
MYOC-P370L-387 - GAAUCUGGAACUCGAACAAACC 22 4540
MYOC-P370L-388 - AG AAUCUGGAACUCGAACAAACC 23 4541
MYOC-P370L-389 - GAG AAUCUGGAACUCGAACAAACC 24 4542
MYOC-P370L-390 - UCCUCUCCAAACUGAACC 18 4543
MYOC-P370L-391 - GUCCUCUCCAAACUGAACC 19 4544
MYOC-P370L-392 - UGUCCUCUCCAAACUGAACC 20 4545
MYOC-P370L-393 - UUGUCCUCUCCAAACUGAACC 21 4546
MYOC-P370L-394 - AUUGUCCUCUCCAAACUGAACC 22 4547
MYOC-P370L-395 - CAU UGUCCUCUCCAAACUGAACC 23 4548
MYOC-P370L-396 - CCAUUGUCCUCUCCAAACUGAACC 24 4549 MYOC-P370L-397 - UCCCUGGAGCUGGCUACC 18 4557
MYOC-P370L-398 - AUCCCUGGAGCUGGCUACC 19 4558
MYOC-P370L-399 - AAUCCCUGGAGCUGGCUACC 20 1814
MYOC-P370L-400 - AAAUCCCUGGAGCUGGCUACC 21 4559
MYOC-P370L-401 - GAAAUCCCUGGAGCUGGCUACC 22 4560
MYOC-P370L-402 - GGAAAUCCCUGGAGCUGGCUACC 23 4561
MYOC-P370L-403 - AGG AAAUCCCUGGAGCUGGCUACC 24 4562
MYOC-P370L-404 - GGCUGAGAAGGAAAUCCC 18 4581
MYOC-P370L-405 - AGGCUGAGAAGGAAAUCCC 19 4582
MYOC-P370L-61 - AAGGCUGAGAAGGAAAUCCC 20 406
MYOC-P370L-406 - GAAGGCUGAGAAGGAAAUCCC 21 4583
MYOC-P370L-407 - UG AAGGCUGAGAAGGAAAUCCC 22 4584
MYOC-P370L-408 - GUG AAGGCUGAGAAGGAAAUCCC 23 4585
MYOC-P370L-409 - AGUGAAGGCUGAGAAGGAAAUCCC 24 4586
MYOC-P370L-410 - AGGCUGAGAAGGAAAUCC 18 4593
MYOC-P370L-411 - AAGGCUGAGAAGGAAAUCC 19 4594
MYOC-P370L-412 - GAAGGCUGAGAAGGAAAUCC 20 1813
MYOC-P370L-413 - UG AAGGCUGAGAAGGAAAUCC 21 4595
MYOC-P370L-414 - GUG AAGGCUGAGAAGGAAAUCC 22 4596
MYOC-P370L-415 - AG UG AAGGCUGAGAAGGAAAUCC 23 4597
MYOC-P370L-416 - CAGUGAAGGCUGAGAAGGAAAUCC 24 4598
MYOC-P370L-417 - AACUGAACCCAGAGAAUC 18 4636
MYOC-P370L-418 - AAACUGAACCCAGAGAAUC 19 4637
MYOC-P370L-65 - C A A AC UGAACCCAGAGAAUC 20 765
MYOC-P370L-419 - CCAAACUGAACCCAGAGAAUC 21 4638
MYOC-P370L-420 - UCCAAACUGAACCCAGAGAAUC 22 4639
MYOC-P370L-421 - C U CCA A AC U G A ACCC AG AG A A U C 23 4640
MYOC-P370L-422 - UCUCCAAACUGAACCCAGAGAAUC 24 4641
MYOC-P370L-423 - GGGUGCUGUGGUGUACUC 18 4648
MYOC-P370L-424 - CGGGUGCUGUGGUGUACUC 19 4649
MYOC-P370L-66 - ACGGGUGCUGUGGUGUACUC 20 760
MYOC-P370L-425 - CACGGGUGCUGUGGUG UACUC 21 4650
MYOC-P370L-426 - GCACGGGUGCUGUGGUGUACUC 22 4651
MYOC-P370L-427 - AGCACGGGUGCUGUGG UGUACUC 23 4652
MYOC-P370L-428 - AAGCACGGGUGCUGUGGUGUACUC 24 4653
MYOC-P370L-429 - UUUCCAGGGCGCUGAGUC 18 4666
MYOC-P370L-430 - AUUUCCAGGGCGCUGAGUC 19 4667
MYOC-P370L-431 - UAUUUCCAGGGCGCUGAGUC 20 4668
MYOC-P370L-432 - CUAUUUCCAGGGCGCUGAGUC 21 4669
MYOC-P370L-433 - UCUAU UUCCAGGGCGCUGAGUC 22 4670
MYOC-P370L-434 - CUCUAUUUCCAGGGCGCUGAGUC 23 4671
MYOC-P370L-435 - CCUCUAUU UCCAGGGCGCUGAGUC 24 4672
MYOC-P370L-436 - CGGACAG U U CCCG U AU UC 18 4679
MYOC-P370L-437 - ACGGACAGUUCCCGUAU UC 19 4680
MYOC-P370L-438 - CACGGACAGUUCCCGUAUUC 20 1815
MYOC-P370L-439 - CCACGGACAGUUCCCGUAUUC 21 4681 MYOC-P370L-440 - ACCACGGACAGU UCCCGUAUUC 22 4682
MYOC-P370L-441 - UACCACGGACAG UUCCCGUAUUC 23 4683
MYOC-P370L-442 - CUACCACGGACAGU UCCCGUAUUC 24 4684
MYOC-P370L-443 - UCGGGGAGCCUCUAUU UC 18 4699
MYOC-P370L-444 - CUCGGGGAGCCUCUAU UUC 19 4700
MYOC-P370L-445 - ACUCGGGGAGCCUCUAU UUC 20 4701
MYOC-P370L-446 - UACUCGGGGAGCCUCUAU UUC 21 4702
MYOC-P370L-447 - GUACUCGGGGAGCCUCUAUUUC 22 4703
MYOC-P370L-448 - UGUACUCGGGGAGCCUCUAUU UC 23 4704
MYOC-P370L-449 - GUGUACUCGGGGAGCCUCUAUUUC 24 4705
MYOC-P370L-450 - GAGACAGUGAAGGCUGAG 18 4756
MYOC-P370L-451 - CGAGACAGUGAAGGCUGAG 19 4757
MYOC-P370L-452 - CCGAGACAGUGAAGGCUGAG 20 1812
MYOC-P370L-453 - ACCGAGACAGUGAAGGCUGAG 21 4758
MYOC-P370L-454 - UACCGAGACAGUGAAGGCUGAG 22 4759
MYOC-P370L-455 - AU ACCGAGACAGUGAAGGCUGAG 23 4760
MYOC-P370L-456 - AAUACCGAGACAGUGAAGGCUGAG 24 4761
MYOC-P370L-457 - GGGUCAU UUACAGCACCG 18 4782
MYOC-P370L-458 - UGGGUCAUUUACAGCACCG 19 4783
MYOC-P370L-459 - CUGGG UCAU U U ACAGCACCG 20 1820
MYOC-P370L-460 - UCUGGGUCAU UUACAGCACCG 21 4784
MYOC-P370L-461 - CUCUGGGUCAUUUACAGCACCG 22 4785
MYOC-P370L-462 - CCUCUGGGUCAU UUACAGCACCG 23 4786
MYOC-P370L-463 - GCCUCUGGGUCAUU UACAGCACCG 24 4787
MYOC-P370L-464 - GGUGCUGUGG UGUACUCG 18 4788
MYOC-P370L-465 - GGGUGCUGUGGUGUACUCG 19 4789
MYOC-P370L-72 - CGGGUGCUGUGGUGUACUCG 20 761
MYOC-P370L-466 - ACGGG UGCUGUGGUGUACUCG 21 4790
MYOC-P370L-467 - CACGGGUGCUGUGGUGUACUCG 22 4791
MYOC-P370L-468 - GCACGGGUGCUGUGGUGUACUCG 23 4792
MYOC-P370L-469 - AGCACGGGUGCUGUGGUGUACUCG 24 4793
MYOC-P370L-470 - AUACCGAGACAGUGAAGG 18 4812
MYOC-P370L-471 - AAUACCGAGACAGUGAAGG 19 4813
MYOC-P370L-472 - GAAUACCGAGACAGUGAAGG 20 1810
MYOC-P370L-473 - UG AAUACCGAGACAGUGAAGG 21 4814
MYOC-P370L-474 - CUGAAUACCGAGACAGUGAAGG 22 4815
MYOC-P370L-475 - GCUG AAUACCGAGACAGUGAAGG 23 4816
MYOC-P370L-476 - AGCUGAAUACCGAGACAGUGAAGG 24 4817
MYOC-P370L-477 - ACAUUGACUUGGCUGUGG 18 4855
MYOC-P370L-478 - GACAUUGACU UGGCUGUGG 19 4856
MYOC-P370L-479 - GGACAU UGACUUGGCUGUGG 20 1818
MYOC-P370L-480 - CGGACAUUGACUUGGCUGUGG 21 4857
MYOC-P370L-481 - ACGGACAUUGACU UGGCUGUGG 22 4858
MYOC-P370L-482 - CACGGACAU UGACUUGGCUGUGG 23 4859
MYOC-P370L-483 - ACACGGACAUUGACU UGGCUGUGG 24 4860
MYOC-P370L-484 - A A AC U G A ACCC AG AG A A U 18 4925 MYOC-P370L-485 - CAAACUGAACCCAGAGAAU 19 4926
MYOC-P370L-486 - CCAAACUGAACCCAGAGAAU 20 4927
MYOC-P370L-487 - UCCAAACUGAACCCAGAGAAU 21 4928
MYOC-P370L-488 - CUCCAAACUGAACCCAGAGAAU 22 4929
MYOC-P370L-489 - UCUCCAAACUGAACCCAGAGAAU 23 4930
MYOC-P370L-490 - CU CU CCAAACUGAACCCAGAGAAU 24 4931
MYOC-P370L-491 - CCAGAACUGUCAUAAGAU 18 4945
MYOC-P370L-492 - UCCAGAACUGUCAUAAGAU 19 4946
MYOC-P370L-493 - GUCCAGAACUGUCAUAAGAU 20 1806
MYOC-P370L-494 - AGUCCAGAACUGUCAUAAGAU 21 4947
MYOC-P370L-495 - GAGUCCAGAACUGUCAUAAGAU 22 4948
MYOC-P370L-496 - UGAG UCCAGAACUGUCAUAAGAU 23 4949
MYOC-P370L-497 - CUG AG UCCAGAACUGUCAUAAGAU 24 4950
MYOC-P370L-498 - CGGGUGCUGUGGUGUACU 18 4972
MYOC-P370L-499 - ACGGGUGCUGUGGUGUACU 19 4973
MYOC-P370L-78 - CACGGGUGCUGUGGUGUACU 20 759
MYOC-P370L-500 - GCACGGGUGCUGUGGUGUACU 21 4974
MYOC-P370L-501 - AGCACGGGUGCUGUGGUGUACU 22 4975
MYOC-P370L-502 - AAGCACGGGUGCUG UGGUGUACU 23 4976
MYOC-P370L-503 - AAAGCACGGG UGCUGUGGUGUACU 24 4977
MYOC-P370L-504 - UGGAACUCGAACAAACCU 18 4978
MYOC-P370L-505 - CUGGAACUCGAACAAACCU 19 4979
MYOC-P370L-79 - UCUGGAACUCGAACAAACCU 20 767
MYOC-P370L-506 - AUCUGGAACUCGAACAAACCU 21 4980
MYOC-P370L-507 - AAUCUGGAACUCGAACAAACCU 22 4981
MYOC-P370L-508 - GAAUCUGGAACUCGAACAAACCU 23 4982
MYOC-P370L-509 - AGAAUCUGGAACUCG A AC A A ACC U 24 4983
MYOC-P370L-510 - ACCGAGACAGUGAAGGCU 18 5003
MYOC-P370L-511 - UACCGAGACAGUGAAGGCU 19 5004
MYOC-P370L-512 - AU ACCGAGACAGUGAAGGCU 20 1811
MYOC-P370L-513 - AAU ACCGAGACAGUGAAGGCU 21 5005
MYOC-P370L-514 - GAAU ACCGAGACAGUGAAGGCU 22 5006
MYOC-P370L-515 - UGAAU ACCGAGACAGUGAAGGCU 23 5007
MYOC-P370L-516 - CUG AAU ACCGAGACAGUGAAGGCU 24 5008
Table 23A provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the third tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L) and start with a 5'G. It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase). Table 23A
Figure imgf000488_0001
Table 23B provides exemplary targeting domains for correcting a mutation (e.g., P370L) in the MYOC gene selected according to the fourth tier parameters. The targeting domains bind within 200 bp from a mutation (e.g., P370L). It is contemplated herein that in an embodiment the targeting domain hybridizes to the target domain through complementary base pairing. Any of the targeting domains in the Table can be used with a N. meningitidis Cas9 molecule that generates a double stranded break (Cas9 nuclease) or a single-stranded break (Cas9 nickase).
Table 23B
Figure imgf000488_0002
III. Cas9 Molecules
Cas9 molecules of a variety of species can be used in the methods and compositions described herein. While the S. pyogenes, S. aureus and S. thermophilus Cas9 molecules are the subject of much of the disclosure herein, Cas9 molecules of, derived from, or based on the Cas9 proteins of other species listed herein can be used as well. In other words, while the much of the description herein uses S. pyogenes and S. thermophilus Cas9 molecules, Cas9 molecules from the other species can replace them, e.g., Staphylococcus aureus and Neisseria meningitidis Cas9 molecules. Additional Cas9 species include: Acidovorax avenae, Actinobacillus pleuropneumoniae, Actinobacillus succinogenes, Actinobacillus suis, Actinomyces sp., cycliphilus denitrificans, Aminomonas paucivorans, Bacillus cereus, Bacillus smithii, Bacillus thuringiensis, Bacteroides sp., Blastopirellula marina,
Bradyrhizobium sp., Brevibacillus laterosporus, Campylobacter coli, Campylobacter jejuni, Campylobacter lari, Candidatus Puniceispirillum, Clostridium cellulolyticum, Clostridium perfringens, Corynebacterium accolens, Corynebacterium diphtheria, Corynebacterium matruchotii, Dinoroseobacter shibae, Eubacterium dolichum, gamma proteobacterium, Gluconacetobacter diazotrophicus, Haemophilus parainfluenzae, Haemophilus sputorum, Helicobacter canadensis, Helicobacter cinaedi, Helicobacter mustelae, Ilyobacter polytropus, Kingella kingae, Lactobacillus crispatus, Listeria ivanovii, Listeria
monocytogenes, Listeriaceae bacterium, Methylocystis sp., Methylosinus trichosporium, Mobiluncus mulieris, Neisseria bacilliformis, Neisseria cinerea, Neisseria flavescens, Neisseria lactamica, Neisseria meningitidis, Neisseria sp., Neisseria wadsworthii,
Nitrosomonas sp., Parvibaculum lavamentivorans, Pasteur ella multocida,
Phascolarctobacterium succinatutens, Ralstonia syzygii, Rhodopseudomonas palustris, Rhodovulum sp., Simonsiella muelleri, Sphingomonas sp., Sporolactobacillus vineae, Staphylococcus lugdunensis, Streptococcus sp., Subdoligranulum sp., Tistrella mobilis, Treponema sp., or Verminephrobacter eiseniae.
A Cas9 molecule or Cas 9 polypeptide, as that term is used herein, refers to a molecule or polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, home or localizes to a site which comprises a target domain and PAM sequence.
Cas9 molecule and Cas9 polypeptide, as those terms are used herein, refer to naturally occurring Cas9 molecules and to engineered, altered, or modified Cas9 molecules or Cas9 polypeptides that differ, e.g., by at least one amino acid residue, from a reference sequence, e.g., the most similar naturally occurring Cas9 molecule or a sequence of Table 25.
Cas9 Domains
Crystal structures have been determined for two different naturally occurring bacterial Cas9 molecules (Jinek et al., Science, 343(6176): 1247997, 2014) and for 5". pyogenes Cas9 with a guide RNA (e.g., a synthetic fusion of crRNA and tracrRNA) (Nishimasu et al., Cell, 156:935-949, 2014; and Anders et al., Nature, 2014, doi: 10.1038/naturel3579).
A naturally occurring Cas 9 molecule comprises two lobes: a recognition (REC) lobe and a nuclease (NUC) lobe; each of which further comprises domains described herein. Figs. 9A-9B provide a schematic of the organization of important Cas9 domains in the primary structure. The domain nomenclature and the numbering of the amino acid residues encompassed by each domain used throughout this disclosure is as described in Nishimasu et al. The numbering of the amino acid residues is with reference to Cas9 from S. pyogenes.
The REC lobe comprises the arginine-rich bridge helix (BH), the REC1 domain, and the REC2 domain. The REC lobe does not share structural similarity with other known proteins, indicating that it is a Cas9-specific functional domain. The BH domain is a long a helix and arginine rich region and comprises amino acids 60-93 of the sequence of S.
pyogenes Cas9. The REC1 domain is important for recognition of the repeat: anti-repeat duplex, e.g., of a gRNA or a tracrRNA, and is therefore critical for Cas9 activity by recognizing the target sequence. The REC1 domain comprises two REC1 motifs at amino acids 94 to 179 and 308 to 717 of the sequence of S. pyogenes Cas9. These two REC1 domains, though separated by the REC2 domain in the linear primary structure, assemble in the tertiary structure to form the REC1 domain. The REC2 domain, or parts thereof, may also play a role in the recognition of the repeat: anti-repeat duplex. The REC2 domain comprises amino acids 180-307 of the sequence of S. pyogenes Cas9.
The NUC lobe comprises the RuvC domain (also referred to herein as RuvC-like domain), the HNH domain (also referred to herein as HNH-like domain), and the PAM- interacting (PI) domain. The RuvC domain shares structural similarity to retroviral integrase superfamily members and cleaves a single strand, e.g., the non-complementary strand of the target nucleic acid molecule. The RuvC domain is assembled from the three split RuvC motifs (RuvC I, RuvCII, and RuvCIII, which are often commonly referred to in the art as RuvCI domain, or N-terminal RuvC domain, RuvCII domain, and RuvCIII domain) at amino acids 1-59, 718-769, and 909-1098, respectively, of the sequence of S. pyogenes Cas9. Similar to the REC1 domain, the three RuvC motifs are linearly separated by other domains in the primary structure, however in the tertiary structure, the three RuvC motifs assemble and form the RuvC domain. The HNH domain shares structural similarity with HNH endonucleases, and cleaves a single strand, e.g., the complementary strand of the target nucleic acid molecule. The HNH domain lies between the RuvC II-III motifs and comprises amino acids 775-908 of the sequence of S. pyogenes Cas9. The PI domain interacts with the PAM of the target nucleic acid molecule, and comprises amino acids 1099-1368 of the sequence of S. pyogenes Cas9. A RuvC-like domain and an HNH-like domain
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises an HNH-like domain and a RuvC-like domain. In an embodiment, cleavage activity is dependent on a RuvC-like domain and an HNH-like domain. A Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more of the following domains: a RuvC-like domain and an HNH-like domain. In an embodiment, a Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide and the eaCas9 molecule or eaCas9 polypeptide comprises a RuvC-like domain, e.g., a RuvC-like domain described below, and/or an HNH-like domain, e.g., an HNH-like domain described below.
RuvC-like domains
In an embodiment, a RuvC-like domain cleaves, a single strand, e.g., the non- complementary strand of the target nucleic acid molecule. The Cas9 molecule or Cas9 polypeptide can include more than one RuvC-like domain (e.g., one, two, three or more RuvC-like domains). In an embodiment, a RuvC-like domain is at least 5, 6, 7, 8 amino acids in length but not more than 20, 19, 18, 17, 16 or 15 amino acids in length. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises an N-terminal RuvC-like domain of about 10 to 20 amino acids, e.g., about 15 amino acids in length.
N-terminal RuvC-like domains
Some naturally occurring Cas9 molecules comprise more than one RuvC-like domain with cleavage being dependent on the N-terminal RuvC-like domain. Accordingly, Cas9 molecules or Cas9 polypeptide can comprise an N-terminal RuvC-like domain. Exemplary N-terminal RuvC-like domains are described below.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an N- terminal RuvC-like domain comprising an amino acid sequence of formula I:
D-X1-G-X2-X3-X4-X5-G-X6-X7-X8-X9 (SEQ ID NO: 8),
wherein,
XI is selected from I, V, M, L and T (e.g., selected from I, V, and L);
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X4 is selected from S, Y, N and F (e.g., S);
X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
X6 is selected from W, F, V, Y, S and L (e.g., W); X7 is selected from A, S, C, V and G (e.g., selected from A and S);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R, or, e.g., selected from T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ
ID NO:8, by as many as 1 but no more than 2, 3, 4, or 5 residues.
In embodiment, the N-terminal RuvC-like domain is cleavage competent.
In embodiment, the N-terminal RuvC-like domain is cleavage incompetent.
In an embodiment, a eaCas9 molecule or eaCas9 polypeptide comprises an N-terminal RuvC-like domain comprising an amino acid sequence of formula II:
D-X1-G-X2-X3-S-X5-G-X6-X7-X8-X9, (SEQ ID NO: 9),
wherein
XI is selected from I, V, M, L and T (e.g., selected from I, V, and L);
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X5 is selected from V, I, L, C, T and F (e.g., selected from V, I and L);
X6 is selected from W, F, V, Y, S and L (e.g., W);
X7 is selected from A, S, C, V and G (e.g., selected from A and S);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S,
A, Y, M and R or selected from e.g., T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO: 9 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
D-I-G-X2-X3-S-V-G-W-A-X8-X9 (SEQ ID NO: 10),
wherein
X2 is selected from T, I, V, S, N, Y, E and L (e.g., selected from T, V, and I);
X3 is selected from N, S, G, A, D, T, R, M and F (e.g., A or N);
X8 is selected from V, I, L, A, M and H (e.g., selected from V, I, M and L); and
X9 is selected from any amino acid or is absent (e.g., selected from T, V, I, L, Δ, F, S, A, Y, M and R or selected from e.g., T, V, I, L and Δ).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO: 10 by as many as 1 but no more than, 2, 3, 4, or 5 residues. In an embodiment, the N-terminal RuvC-like domain comprises an amino acid sequence of formula III:
D-I-G-T-N-S-V-G-W-A-V-X (SEQ ID NO: 11),
wherein
X is a non-polar alkyl amino acid or a hydroxyl amino acid, e.g., X is selected from
V, I, L and T (e.g., the eaCas9 molecule can comprise an N-terminal RuvC-like domain shown in Figs. 2A-2G (is depicted as Y)).
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of SEQ ID NO: 11 by as many as 1 but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N- terminal RuvC like domain disclosed herein, e.g., in Figs. 3A-3B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, 3 or all of the highly conserved residues identified in Figs. 3A-3B or Figs. 7A-7B are present.
In an embodiment, the N-terminal RuvC-like domain differs from a sequence of an N- terminal RuvC-like domain disclosed herein, e.g., in Figs. 4A-4B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, or all of the highly conserved residues identified in Figs. 4A-4B or Figs. 7A-7B are present.
Additional RuvC-like domains
In addition to the N-terminal RuvC-like domain, the Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can comprise one or more additional RuvC-like domains. In an embodiment, the Cas9 molecule or Cas9 polypeptide can comprise two additional RuvC-like domains. Preferably, the additional RuvC-like domain is at least 5 amino acids in length and, e.g., less than 15 amino acids in length, e.g., 5 to 10 amino acids in length, e.g., 8 amino acids in length.
An additional RuvC-like domain can comprise an amino acid sequence:
I-X1-X2-E-X3-A-R-E (SEQ ID NO: 12), wherein
XI is V or H,
X2 is I, L or V (e.g., I or V); and
X3 is M or T.
In an embodiment, the additional RuvC-like domain comprises the amino acid sequence:
I-V-X2-E-M-A-R-E (SEQ ID NO: 13), wherein
X2 is I, L or V (e.g., I or V) (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an additional RuvC-like domain shown in Fig. 2A-2G or Figs. 7A-7B (depicted as B)).
An additional RuvC-like domain can comprise an amino acid sequence:
H-H-A-X1-D-A-X2-X3 (SEQ ID NO: 14), wherein
XI is H or L;
X2 is R or V; and
X3 is E or V.
In an embodiment, the additional RuvC-like domain comprises the amino acid sequence: H-H-A-H-D-A-Y-L (SEQ ID NO: 15).
In an embodiment, the additional RuvC-like domain differs from a sequence of SEQ
ID NO: 12, 13, 14 or 15 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In some embodiments, the sequence flanking the N-terminal RuvC-like domain is a sequences of formula V:
K-X1 '-Y-X2'-X3'-X4'-Z-T-D-X9'-Y, (SEQ ID NO: 16).
wherein
XI ' is selected from K and P,
X2' is selected from V, L, I, and F (e.g., V, I and L);
X3' is selected from G, A and S (e.g., G),
X4' is selected from L, I, V and F (e.g., L);
X9' is selected from D, E, N and Q; and
Z is an N-terminal RuvC-like domain, e.g., as described above.
HNH-like domains
In an embodiment, an HNH-like domain cleaves a single stranded complementary domain, e.g., a complementary strand of a double stranded nucleic acid molecule. In an embodiment, an HNH-like domain is at least 15, 20, 25 amino acids in length but not more than 40, 35 or 30 amino acids in length, e.g., 20 to 35 amino acids in length, e.g., 25 to 30 amino acids in length. Exemplary HNH-like domains are described below.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH- like domain having an amino acid sequence of formula VI:
X1-X2-X3-H-X4-X5-P-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-N-X16-X17- X18-X19-X20-X21-X22-X23-N (SEQ ID NO: 17), wherein
XI is selected from D, E, Q and N (e.g., D and E);
X2 is selected from L, I, R, Q, V, M and K; X3 is selected from D and E;
X4 is selected from I, V, T, A and L (e.g., A, I and V);
X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
X6 is selected from Q, H, R, K, Y, I, L, F and W;
X7 is selected from S, A, D, T and K (e.g., S and A);
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
XI 1 is selected from D, S, N, R, L and T (e.g., D);
X12 is selected from D, N and S;
X13 is selected from S, A, T, G and R (e.g., S);
X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X16 is selected from K, L, R, M, T and F (e.g., L, R and K);
X17 is selected from V, L, I, A and T;
X18 is selected from L, I, V and A (e.g., L and I);
X19 is selected from T, V, C, E, S and A (e.g., T and V);
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, a HNH-like domain differs from a sequence of SEQ ID NO: 17 by at least one but no more than, 2, 3, 4, or 5 residues.
In an embodiment, the HNH-like domain is cleavage competent.
In an embodiment, the HNH-like domain is cleavage incompetent.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH- like domain comprising an amino acid sequence of formula VII:
X1-X2-X3-H-X4-X5-P-X6-S-X8-X9-X10-D-D-S-X14-X15-N-K-V-L-X19-X20- X21-X22-X23-N (SEQ ID NO: 18),
wherein
XI is selected from D and E;
X2 is selected from L, I, R, Q, V, M and K;
X3 is selected from D and E;
X4 is selected from I, V, T, A and L (e.g., A, I and V); X5 is selected from V, Y, I, L, F and W (e.g., V, I and L);
X6 is selected from Q, H, R, K, Y, I, L, F and W;
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X19 is selected from T, V, C, E, S and A (e.g., T and V);
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 18 by 1, 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH- like domain comprising an amino acid sequence of formula VII:
X1-V-X3-H-I-V-P-X6-S-X8-X9-X10-D-D-S-X14-X15-N-K-V-L-T-X20-X21-X22- X23-N (SEQ ID NO: 19),
wherein
XI is selected from D and E;
X3 is selected from D and E;
X6 is selected from Q, H, R, K, Y, I, L and W;
X8 is selected from F, L, V, K, Y, M, I, R, A, E, D and Q (e.g., F);
X9 is selected from L, R, T, I, V, S, C, Y, K, F and G;
X10 is selected from K, Q, Y, T, F, L, W, M, A, E, G, and S;
X14 is selected from I, L, F, S, R, Y, Q, W, D, K and H (e.g., I, L and F);
X15 is selected from D, S, I, N, E, A, H, F, L, Q, M, G, Y and V;
X20 is selected from R, F, T, W, E, L, N, C, K, V, S, Q, I, Y, H and A;
X21 is selected from S, P, R, K, N, A, H, Q, G and L;
X22 is selected from D, G, T, N, S, K, A, I, E, L, Q, R and Y; and
X23 is selected from K, V, A, E, Y, I, C, L, S, T, G, K, M, D and F.
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 19 by 1, 2, 3, 4, or 5 residues. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an HNH- like domain having an amino acid sequence of formula VIII:
D-X2-D-H-I-X5-P-Q-X7-F-X9-X10-D-X12-S-I-D-N-X16-V-L-X19-X20-S-X22- X23-N (SEQ ID NO:20),
wherein
X2 is selected from I and V;
X5 is selected from I and V;
X7 is selected from A and S;
X9 is selected from I and L;
X10 is selected from K and T;
X12 is selected from D and N;
X16 is selected from R, K and L; X19 is selected from T and V;
X20 is selected from S and R;
X22 is selected from K, D and A; and
X23 is selected from E, K, G and N (e.g., the eaCas9 molecule or eaCas9 polypeptide can comprise an HNH-like domain as described herein).
In an embodiment, the HNH-like domain differs from a sequence of SEQ ID NO: 20 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises the amino acid sequence of formula IX:
L-Y- Y-L-Q-N-G-Xl ' -D-M-Y-X2' -X3 ' -X4' -X5 ' -L-D-I— X6' -XT -L-S-X8 ' -Y-Z-N- R-X9'-K-X10'-D-X11'-V-P (SEQ ID NO: 21),
wherein
XI ' is selected from K and R;
X2' is selected from V and T;
X3' is selected from G and D;
X4' is selected from E, Q and D;
X5' is selected from E and D;
X6' is selected from D, N and H;
XV is selected from Y, R and N;
X8' is selected from Q, D and N; X9' is selected from G and E;
X10' is selected from S and G;
XI 1 ' is selected from D and N; and
Z is an HNH-like domain, e.g., as described above. In an embodiment, the eaCas9 molecule or eaCas9 polypeptide comprises an amino acid sequence that differs from a sequence of SEQ ID NO:21 by as many as 1 but no more than 2, 3, 4, or 5 residues.
In an embodiment, the HNH-like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in Figs. 5A-5C or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1 or both of the highly conserved residues identified in Figs. 5A-5C or Figs. 7A-7B are present.
In an embodiment, the HNH -like domain differs from a sequence of an HNH-like domain disclosed herein, e.g., in Figs. 6A-6B or Figs. 7A-7B, as many as 1 but no more than 2, 3, 4, or 5 residues. In an embodiment, 1, 2, all 3 of the highly conserved residues identified in Figs. 6A-6B or Figs. 7A-7B are present.
Cas9 Activities
Nuclease and Helicase Activities
In an embodiment, the Cas9 molecule or Cas9 polypeptide is capable of cleaving a target nucleic acid molecule. Typically wild type Cas9 molecules cleave both strands of a target nucleic acid molecule. Cas9 molecules and Cas9 polypeptides can be engineered to alter nuclease cleavage (or other properties), e.g., to provide a Cas9 molecule or Cas9 peolypeptide which is a nickase, or which lacks the ability to cleave target nucleic acid. A Cas9 molecule or Cas9 polypeptide that is capable of cleaving a target nucleic acid molecule is referred to herein as an eaCas9 (an enzymatically active Cas9) molecule or eaCas9 polypeptide. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide, comprises one or more of the following activities:
a nickase activity, i.e., the ability to cleave a single strand, e.g., the non- complementary strand or the complementary strand, of a nucleic acid molecule;
a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities;
an endonuclease activity;
an exonuclease activity; and
a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid.
In an embodiment, an enzymatically active Cas9 or an eaCas9 molecule or an eacas9 polypeptide cleaves both DNA strands and results in a double stranded break. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide cleaves only one strand, e.g., the strand to which the gRNA hybridizes to, or the strand complementary to the strand the gRNA hybridizes with. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH-like domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an N-terminal RuvC-like domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises cleavage activity associated with an HNH-like domain and cleavage activity associated with an N-terminal RuvC-like domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH-like domain and an inactive, or cleavage incompetent, N-terminal RuvC-like domain. In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH-like domain and an active, or cleavage competent, N-terminal RuvC-like domain. Some Cas9 molecules or Cas9 polypeptides have the ability to interact with a gRNA molecule, and in conjunction with the gRNA molecule localize to a core target domain, but are incapable of cleaving the target nucleic acid, or incapable of cleaving at efficient rates. Cas9 molecules having no, or no substantial, cleavage activity are referred to herein as an eiCas9 molecule or eiCas9 polypeptide. For example, an eiCas9 molecule or eiCas9 polypeptide can lack cleavage activity or have substantially less, e.g., less than 20, 10, 5, 1 or 0.1 % of the cleavage activity of a reference Cas9 molecule or eiCas9 polypeptide, as measured by an assay described herein.
Targeting and PAMs
A Cas9 molecule or Cas9 polypeptide, is a polypeptide that can interact with a guide RNA (gRNA) molecule and, in concert with the gRNA molecule, localizes to a site which comprises a target domain and PAM sequence.
In an embodiment, the ability of an eaCas9 molecule or eaCas9 polypeptide to interact with and cleave a target nucleic acid is PAM sequence dependent. A PAM sequence is a sequence in the target nucleic acid. In an embodiment, cleavage of the target nucleic acid occurs upstream from the PAM sequence. EaCas9 molecules from different bacterial species can recognize different sequence motifs (e.g., PAM sequences). In an embodiment, an eaCas9 molecule of S. pyogenes recognizes the sequence motif NGG and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Mali et al , SCIENCE 2013; 339(6121): 823-826. In an embodiment, an eaCas9 molecule of S. thermophilus recognizes the sequence motif NGGNG and NNAGAAW (W = A or T) and directs cleavage of a core target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from these sequences. See, e.g., Horvath et al., SCIENCE 2010;
327(5962): 167-170, and Deveau a/., J BACTERIOL 2008; 190(4): 1390-1400. In an embodiment, an eaCas9 molecule of S. mutans recognizes the sequence motif NGG and/or NAAR (R = A or G) and directs cleavage of a core target nucleic acid sequence 1 to 10, e.g., 3 to 5 base pairs, upstream from this sequence. See, e.g., Deveau et al., J BACTERIOL 2008; 190(4): 1390-1400. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRR (R = A or G) and directs cleavage of a target nucleic acid sequence
I to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRN (R = A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRT (R = A or G) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of S. aureus recognizes the sequence motif NNGRRV (R = A or G, V = A, G or C) and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. In an embodiment, an eaCas9 molecule of Neisseria meningitidis recognizes the sequence motif NNNNGATT or NNNGCTT and directs cleavage of a target nucleic acid sequence 1 to 10, e.g., 3 to 5, base pairs upstream from that sequence. See, e.g., Hou et al, PNAS Early Edition 2013, 1-6. The ability of a Cas9 molecule to recognize a PAM sequence can be determined, e.g., using a transformation assay described in Jinek et al., SCIENCE 2012 337:816. In the aforementioned embodiments, N can be any nucleotide residue, e.g., any of A, G, C or T.
As is discussed herein, Cas9 molecules can be engineered to alter the PAM specificity of the Cas9 molecule.
Exemplary naturally occurring Cas9 molecules are described in Chylinski et al., RNA BIOLOGY 2013 10:5, 727-737. Such Cas9 molecules include Cas9 molecules of a cluster 1 bacterial family, cluster 2 bacterial family, cluster 3 bacterial family, cluster 4 bacterial family, cluster 5 bacterial family, cluster 6 bacterial family, a cluster 7 bacterial family, a cluster 8 bacterial family, a cluster 9 bacterial family, a cluster 10 bacterial family, a cluster
I I bacterial family, a cluster 12 bacterial family, a cluster 13 bacterial family, a cluster 14 bacterial family, a cluster 15 bacterial family, a cluster 16 bacterial family, a cluster 17 bacterial family, a cluster 18 bacterial family, a cluster 19 bacterial family, a cluster 20 bacterial family, a cluster 21 bacterial family, a cluster 22 bacterial family, a cluster 23 bacterial fami y. a cluster 24 bacterial fami y. a cluster 25 bacterial famiiiy. a cluster 26 bacterial fami y. a cluster 27 bacterial fami y. a cluster 28 bacterial famiiiy. a cluster 29 bacterial fami y. a cluster 30 bacterial fami y. a cluster 31 bacterial famiiiy. a cluster 32 bacterial fami y. a cluster 33 bacterial fami y. a cluster 34 bacterial famiiiy. a cluster 35 bacterial fami y. a cluster 36 bacterial fami y. a cluster 37 bacterial famiiiy. a cluster 38 bacterial fami y. a cluster 39 bacterial fami y. a cluster 40 bacterial famiiiy. a cluster 41 bacterial fami y. a cluster 42 bacterial fami y. a cluster 43 bacterial famiiiy. a cluster 44 bacterial fami y. a cluster 45 bacterial fami y. a cluster 46 bacterial famiiiy. a cluster 47 bacterial fami y. a cluster 48 bacterial fami y. a cluster 49 bacterial famiiiy. a cluster 50 bacterial fami y. a cluster 51 bacterial fami y. a cluster 52 bacterial famiiiy. a cluster 53 bacterial fami y. a cluster 54 bacterial fami y. a cluster 55 bacterial famiiiy. a cluster 56 bacterial fami y. a cluster 57 bacterial fami y. a cluster 58 bacterial famiiiy. a cluster 59 bacterial fami y. a cluster 60 bacterial fami y. a cluster 61 bacterial famiiiy. a cluster 62 bacterial fami y. a cluster 63 bacterial fami y. a cluster 64 bacterial famiiiy. a cluster 65 bacterial fami y. a cluster 66 bacterial fami y. a cluster 67 bacterial famiiiy. a cluster 68 bacterial fami y. a cluster 69 bacterial fami y. a cluster 70 bacterial famiiiy. a cluster 71 bacterial fami y. a cluster 72 bacterial fami y. a cluster 73 bacterial famiiiy. a cluster 74 bacterial fami y. a cluster 75 bacterial fami y, a cluster 76 bacterial fam iiily. a cluster 77 bacterial fami y, or a cluster 78 bacterial family.
Exemplary naturally occurring Cas9 molecules include a Cas9 molecule of a cluster 1 bacterial family. Examples include a Cas9 molecule of: S. pyogenes (e.g., strain SF370, MGAS10270, MGAS10750, MGAS2096, MGAS315, MGAS5005, MGAS6180,
MGAS9429, NZ131 and SSI-1), 5". thermophilus (e.g., strain LMD-9), 5". pseudoporcinus (e.g., strain SPIN 20026), S. mutans (e.g., strain UA159, NN2025), S. macacae (e.g., strain NCTC11558), S. gallolyticus (e.g., strain UCN34, ATCC BAA-2069), S. equines (e.g., strain ATCC 9812, MGCS 124), S. dysdalactiae (e.g., strain GGS 124), S. bovis (e.g., strain ATCC 700338), S. anginosus (e.g., strain F0211), S. agalactiae (e.g., strain NEM316, A909), Listeria monocytogenes (e.g., strain F6854), Listeria innocua (L. innocua, e.g., strain Clipl l262), Enterococcus italicus (e.g., strain DSM 15952), or Enterococcus faecium (e.g., strain 1,231,408). Additional exemplary Cas9 molecules are a Cas9 molecule of Neisseria meningitidis (Hou et ah, PNAS Early Edition 2013, 1-6 and a S. aureus cas9 molecule.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence:
having 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with;
differs at no more than, 2, 5, 10, 15, 20, 30, or 40% of the amino acid residues when compared with;
differs by at least 1, 2, 5, 10 or 20 amino acids, but by no more than 100, 80, 70, 60, 50, 40 or 30 amino acids from; or
is identical to any Cas9 molecule sequence described herein, or a naturally occurring Cas9 molecule sequence, e.g., a Cas9 molecule from a species listed herein or described in Chylinski et al, RNA BIOLOGY 2013 10:5, 727-737; Hou et al , PNAS Early Edition 2013, 1- 6; SEQ ID NO: 1-4. In an embodiment, the Cas9 molecule or Cas9 polypeptide comprises one or more of the following activities: a nickase activity; a double stranded cleavage activity (e.g., an endonuclease and/or exonuclease activity); a helicase activity; or the ability, together with a gRNA molecule, to localize to a target nucleic acid.
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises any of the amino acid sequence of the consensus sequence of Figs. 2A-2G, wherein "*" indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule or Cas9 polypeptide of S. pyogenes, S. thermophilus, S. mutans and L. innocua, and "-" indicates any amino acid. In an embodiment, a Cas9 molecule differs from the sequence of the consensus sequence of Figs. 2A-2G by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues. In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises the amino acid sequence of SEQ ID NO:7 of Figs. 7A-7B, wherein "*" indicates any amino acid found in the corresponding position in the amino acid sequence of a Cas9 molecule or Cas9 polypeptide of S. pyogenes, or N. meningitidis, "-" indicates any amino acid, and "-" indicates any amino acid or absent. In an embodiment, a Cas9 molecule or Cas9 polypeptide differs from the sequence of SEQ ID NO: 6 or 7 disclosed in Figs. 7A-7B by at least 1, but no more than 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acid residues.
A comparison of the sequence of a number of Cas9 molecules indicate that certain regions are conserved. These are identified below as:
region 1 ( residuesl to 180, or in the case of region 1 'residues 120 to 180) region 2 ( residues360 to 480);
region 3 ( residues 660 to 720);
region 4 ( residues 817 to 900); and
region 5 ( residues 900 to 960);
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises regions 1-5, together with sufficient additional Cas9 molecule sequence to provide a biologically active molecule, e.g., a Cas9 molecule having at least one activity described herein. In an embodiment, each of regions 1-5, independently, have 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with the corresponding residues of a Cas9 molecule or Cas9 polypeptide described herein, e.g., a sequence from Figs. 2A-2G or from Figs. 7A- 7B.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 1:
having 50%, 60%, 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 1-180 (the numbering is according to the motif sequence in Figs. 2A-2G; 52% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes;
differs by at least 1, 2, 5, 10 or 20 amino acids but by no more than 90, 80, 70, 60, 50, 40 or 30 amino acids from amino acids 1-180 of the amino acid sequence of Cas9 of S.
pyogenes, S. thermophilus, S. mutans or Listeria innocua; or
is identical to 1-180 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region :
having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% homology with amino acids 120-180 (55% of residues in the four Cas9 sequences in Figs.
2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or /.. innocua ; or
is identical to 120-180 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 2:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or
99% homology with amino acids 360-480 (52% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or /.. innocua; or
is identical to 360-480 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 3:
having 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 660-720 (56% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or L. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or /.. innocua; or
is identical to 660-720 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 4:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 817-900 (55% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or /.. innocua; or
is identical to 817-900 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua.
In an embodiment, a Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, comprises an amino acid sequence referred to as region 5:
having 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% homology with amino acids 900-960 (60% of residues in the four Cas9 sequences in Figs. 2A-2G are conserved) of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua;
differs by at least 1, 2, or 5 amino acids but by no more than 35, 30, 25, 20 or 10 amino acids from amino acids 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S. thermophilus, S. mutans or /.. innocua; or
is identical to 900-960 of the amino acid sequence of Cas9 of S. pyogenes, S.
thermophilus, S. mutans or /.. innocua.
Engineered or Altered Cas9 Molecules and Cas9 Polypeptides
Cas9 molecules and Cas9 polypeptides described herein, e.g., naturally occurring
Cas9 molecules can possess any of a number of properties, including: nickase activity, nuclease activity (e.g., endonuclease and/or exonuc lease activity); helicase activity; the ability to associate functionally with a gRNA molecule; and the ability to target (or localize to) a site on a nucleic acid (e.g., PAM recognition and specificity). In an embodiment, a Cas9 molecule or Cas9 polypeptide can include all or a subset of these properties. In typical embodiments, a Cas9 molecule or Cas9 polypeptide have the ability to interact with a gRNA molecule and, in concert with the gRNA molecule, localize to a site in a nucleic acid. Other activities, e.g., PAM specificity, cleavage activity, or helicase activity can vary more widely in Cas9 molecules and Cas9 polypeptide.
Cas9 molecules include engineered Cas9 molecules and engineered Cas9
polypeptides (engineered, as used in this context, means merely that the Cas9 molecule or Cas9 polypeptide differs from a reference sequences, and implies no process or origin limitation). An engineered Cas9 molecule or Cas9 polypeptide can comprise altered enzymatic properties, e.g., altered nuclease activity, (as compared with a naturally occurring or other reference Cas9 molecule) or altered helicase activity. As discussed herein, an engineered Cas9 molecule or Cas9 polypeptide can have nickase activity (as opposed to double strand nuclease activity). In an embodiment an engineered Cas9 molecule or Cas9 polypeptide can have an alteration that alters its size, e.g., a deletion of amino acid sequence that reduces its size, e.g., without significant effect on one or more, or any Cas9 activity. In an embodiment, an engineered Cas9 molecule or Cas9 polypeptide can comprise an alteration that affects PAM recognition. E.g., an engineered Cas9 molecule can be altered to recognize a PAM sequence other than that recognized by the endogenous wild-type PI domain. In an embodiment, a Cas9 molecule or Cas9 polypeptide can differ in sequence from a naturally occurring Cas9 molecule but not have significant alteration in one or more Cas9 activities.
Cas9 molecules or Cas9 polypeptides with desired properties can be made in a number of ways, e.g., by alteration of a parental, e.g., naturally occurring Cas9 molecules or Cas9 polypeptides to provide an altered Cas9 molecule or Cas9 polypeptides having a desired property. For example, one or more mutations or differences relative to a parental Cas9 molecule, e.g., a naturally occurring or engineered Cas9 molecule, can be introduced. Such mutations and differences comprise: substitutions (e.g., conservative substitutions or substitutions of non-essential amino acids); insertions; or deletions. In an embodiment, a Cas9 molecule or Cas9 polypeptide can comprises one or more mutations or differences, e.g., at least 1, 2, 3, 4, 5, 10, 15, 20, 30, 40 or 50 mutations, but less than 200, 100, or 80 mutations relative to a reference, e.g., a parental, Cas9 molecule.
In an embodiment, a mutation or mutations do not have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein. In an embodiment, a mutation or mutations have a substantial effect on a Cas9 activity, e.g. a Cas9 activity described herein. Non-Cleaving and Modified-Cleavage Cas9 Molecules and Cas9 Polypeptides
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule or Cas9 polypeptide can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S. pyogenes, as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded nucleic acid (endonuc lease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non-complementary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity) , e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S. pyogenes); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated.
Modified Cleavage eaCas9 Molecules and eaCas9 Polypeptides
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises one or more of the following activities: cleavage activity associated with an N-terminal RuvC-like domain; cleavage activity associated with an HNH-like domain; cleavage activity associated with an HNH-like domain and cleavage activity associated with an N-terminal RuvC-like domain.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an active, or cleavage competent, HNH-like domain (e.g., an HNH-like domain described herein, e.g., SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20 or SEQ ID NO: 21) and an inactive, or cleavage incompetent, N-terminal RuvC-like domain. An exemplary inactive, or cleavage incompetent N-terminal RuvC-like domain can have a mutation of an aspartic acid in an N-terminal RuvC-like domain, e.g., an aspartic acid at position 9 of the consensus sequence disclosed in Figs. 2A-2G or an aspartic acid at position 10 of SEQ ID NO: 7, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 molecule or eaCas9 polypeptide differs from wild type in the N-terminal RuvC-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or .1 % of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology.
In an embodiment, an eaCas9 molecule or eaCas9 polypeptide comprises an inactive, or cleavage incompetent, HNH domain and an active, or cleavage competent, N-terminal RuvC-like domain (e.g., a RuvC-like domain described herein, e.g., SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, or SEQ ID NO: 16). Exemplary inactive, or cleavage incompetent HNH- like domains can have a mutation at one or more of: a histidine in an HNH-like domain, e.g., a histidine shown at position 856 of the consensus sequence disclosed in Figs. 2A-2G, e.g., can be substituted with an alanine; and one or more asparagines in an HNH-like domain, e.g., an asparagine shown at position 870 of the consensus sequence disclosed in Figs. 2A-2G and/or at position 879 of the consensus sequence disclosed in Figs. 2A-2G, e.g., can be substituted with an alanine. In an embodiment, the eaCas9 differs from wild type in the HNH-like domain and does not cleave the target nucleic acid, or cleaves with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can by a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, or S. thermophilus. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology. Alterations in the Ability to Cleave One or Both Strands of a Target Nucleic Acid
In an embodiment, exemplary Cas9 activities comprise one or more of PAM specificity, cleavage activity, and helicase activity. A mutation(s) can be present, e.g., in one or more RuvC-like domain, e.g., an N-terminal RuvC-like domain; an HNH-like domain; a region outside the RuvC-like domains and the HNH-like domain. In some embodiments, a mutation(s) is present in a RuvC-like domain, e.g., an N-terminal RuvC-like domain. In some embodiments, a mutation(s) is present in an HNH-like domain. In some embodiments, mutations are present in both a RuvC-like domain, e.g., an N-terminal RuvC-like domain and an HNH-like domain.
Exemplary mutations that may be made in the RuvC domain or HNH domain with reference to the S. pyogenes sequence include: D10A, E762A, H840A, N854A, N863A and/or D986A.
In an embodiment, a Cas9 molecule or Cas9 polypeptide is an eiCas9 molecule or eiCas9 polypeptide comprising one or more differences in a RuvC domain and/or in an HNH domain as compared to a reference Cas9 molecule, and the eiCas9 molecule or eiCas9 polypeptide does not cleave a nucleic acid, or cleaves with significantly less efficiency than does wildype, e.g., when compared with wild type in a cleavage assay, e.g., as described herein, cuts with less than 50, 25, 10, or 1% of a reference Cas9 molecule, as measured by an assay described herein.
Whether or not a particular sequence, e.g., a substitution, may affect one or more activity, such as targeting activity, cleavage activity, etc., can be evaluated or predicted, e.g., by evaluating whether the mutation is conservative or by the method described in Section IV. In an embodiment, a "non-essential" amino acid residue, as used in the context of a Cas9 molecule, is a residue that can be altered from the wild-type sequence of a Cas9 molecule, e.g., a naturally occurring Cas9 molecule, e.g., an eaCas9 molecule, without abolishing or more preferably, without substantially altering a Cas9 activity (e.g., cleavage activity), whereas changing an "essential" amino acid residue results in a substantial loss of activity (e.g., cleavage activity).
In an embodiment, a Cas9 molecule or Cas9 polypeptide comprises a cleavage property that differs from naturally occurring Cas9 molecules, e.g., that differs from the naturally occurring Cas9 molecule having the closest homology. For example, a Cas9 molecule or Cas9 polypeptide can differ from naturally occurring Cas9 molecules, e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni as follows: its ability to modulate, e.g., decreased or increased, cleavage of a double stranded break (endonuclease and/or exonuclease activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni); its ability to modulate, e.g., decreased or increased, cleavage of a single strand of a nucleic acid, e.g., a non-complimentary strand of a nucleic acid molecule or a complementary strand of a nucleic acid molecule (nickase activity), e.g., as compared to a naturally occurring Cas9 molecule (e.g., a Cas9 molecule of S aureus, S. pyogenes, or C. jejuni); or the ability to cleave a nucleic acid molecule, e.g., a double stranded or single stranded nucleic acid molecule, can be eliminated.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising one or more of the following activities: cleavage activity associated with a RuvC domain; cleavage activity associated with an HNH domain; cleavage activity associated with an HNH domain and cleavage activity associated with a RuvC domain.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eiCas9 molecule or eiCas9 polypeptide which does not cleave a nucleic acid molecule (either double stranded or single stranded nucleic acid molecules) or cleaves a nucleic acid molecule with significantly less efficiency, e.g., less than 20, 10, 5, 1 or 0.1% of the cleavage activity of a reference Cas9 molecule, e.g., as measured by an assay described herein. The reference Cas9 molecule can be a naturally occurring unmodified Cas9 molecule, e.g., a naturally occurring Cas9 molecule such as a Cas9 molecule of S. pyogenes, S. thermophilus, S. aureus, C. jejuni or N. meningitidis. In an embodiment, the reference Cas9 molecule is the naturally occurring Cas9 molecule having the closest sequence identity or homology. In an embodiment, the eiCas9 molecule or eiCas9 polypeptide lacks substantial cleavage activity associated with a RuvC domain and cleavage activity associated with an ΗΝΗ domain.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is is an eaCas9 molecule or eaCas9 polypeptide is comprising the fixed amino acid residues of S. pyogenes shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. pyogenes (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G or SEQ ID NO:7.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule; and, the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. pyogenes Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. thermophilus shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. thermophilus (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G. In an
embodiment
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. thermophilus Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of S. mutans shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of S. mutans (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-" in the consensus sequence disclosed in Figs. 2A-2G.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which: the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an S. mutans Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide is an eaCas9 molecule or eaCas9 polypeptide comprising the fixed amino acid residues of L. innocula shown in the consensus sequence disclosed in Figs. 2A-2G, and has one or more amino acids that differ from the amino acid sequence of L. innocula (e.g., has a substitution) at one or more residue (e.g., 2, 3, 5, 10, 15, 20, 30, 50, 70, 80, 90, 100, 200 amino acid residues) represented by an "-"in the consensus sequence disclosed in Figs. 2A-2G.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide comprises a sequence in which:
the sequence corresponding to the fixed sequence of the consensus sequence disclosed in Figs. 2A-2G differs at no more than 1, 2, 3, 4, 5, 10, 15, or 20% of the fixed residues in the consensus sequence disclosed in Figs. 2A-2G;
the sequence corresponding to the residues identified by "*" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 35, or 40% of the "*" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an L. innocula Cas9 molecule; and,
the sequence corresponding to the residues identified by "-" in the consensus sequence disclosed in Figs. 2A-2G differ at no more than 5, 10, 15, 20, 25, 30, 35, 40, 45, 55, or 60% of the "-" residues from the corresponding sequence of naturally occurring Cas9 molecule, e.g., an L. innocula Cas9 molecule.
In an embodiment, the altered Cas9 molecule or Cas9 polypeptide, e.g., an eaCas9 molecule or eaCas9 polypeptide, can be a fusion, e.g., of two of more different Cas9 molecules, e.g., of two or more naturally occurring Cas9 molecules of different species. For example, a fragment of a naturally occurring Cas9 molecule of one species can be fused to a fragment of a Cas9 molecule of a second species. As an example, a fragment of a Cas9 molecule of S. pyogenes comprising an N-terminal RuvC-like domain can be fused to a fragment of a Cas9 molecule of a species other than S. pyogenes (e.g., S. thermophilus) comprising an HNH-like domain.
Cas9 Molecules or Cas9 polypeptides with Altered PAM Recognition or No PAM Recognition
Naturally occurring Cas9 molecules can recognize specific PAM sequences, for example, the PAM recognition sequences described above for S. pyogenes, S. thermophiles, S. mutans, S. aureus and N. meningitidis.
In an embodiment, a Cas9 molecule or Cas9 polypeptide has the same PAM specificities as a naturally occurring Cas9 molecule. In another embodiment, a Cas9 molecule or Cas9 polypeptide has a PAM specificity not associated with a naturally occurring Cas9 molecule, or a PAM specificity not associated with the naturally occurring Cas9 molecule to which it has the closest sequence homology. For example, a naturally occurring Cas9 molecule or Cas9 polypeptide can be altered, e.g., to alter PAM recognition, e.g., to alter the PAM sequence that the Cas9 molecule recognizes to decrease off target sites and/or improve specificity; or eliminate a PAM recognition requirement. In an embodiment, a Cas9 molecule or Cas9 polypeptide can be altered, e.g., to increase length of PAM recognition sequence and/or improve Cas9 specificity to high level of identity (e.g., 98%, 99% or 100% match between gRNA and a PAM sequence), to decrease off target sites and increase specificity. In an embodiment, the length of the PAM recognition sequence is at least 4, 5, 6, 7, 8, 9, 10 or 15 amino acids in length. In an embodiment, the Cas9 specificity requires at least 90%, 95%, 96%, 97%, 98%, 99% or more homology between the gRNA and the PAM sequence. Cas9 molecules or Cas9 polypeptides that recognize different PAM sequences and/or have reduced off-target activity can be generated using directed evolution. Exemplary methods and systems that can be used for directed evolution of Cas9 molecules are described, e.g., in Esvelt et al. NATURE 2011, 472(7344): 499-503. Candidate Cas9 molecules can be evaluated, e.g., by methods described in Section IV.
Alterations of the PI domain, which mediates PAM recognition, are discussed below.
Synthetic Cas9 Molecules and Cas9 Polypeptides with Altered PI Domains
Current genome-editing methods are limited in the diversity of target sequences that can be targeted by the PAM sequence that is recognized by the Cas9 molecule utilized. A synthetic Cas9 molecule (or Syn-Cas9 molecule), or synthetic Cas9 polypeptide (or Syn-Cas9 polypeptide), as that term is used herein, refers to a Cas9 molecule or Cas9 polypeptide that comprises a Cas9 core domain from one bacterial species and a functional altered PI domain, i.e., a PI domain other than that naturally associated with the Cas9 core domain, e.g., from a different bacterial species.
In an embodiment, the altered PI domain recognizes a PAM sequence that is different from the PAM sequence recognized by the naturally-occurring Cas9 from which the Cas9 core domain is derived. In an embodiment, the altered PI domain recognizes the same PAM sequence recognized by the naturally-occurring Cas9 from which the Cas9 core domain is derived, but with different affinity or specificity. A Syn-Cas9 molecule or Syn-Cas9 polypetide can be, respectively, a Syn-eaCas9 molecule or Syn-eaCas9 polypeptide or a Syn- eiCas9 molecule Syn-eiCas9 polypeptide.
An exemplary Syn-Cas9 molecule or Syn-Cas9 polypetide comprises:
a) a Cas9 core domain, e.g., a Cas9 core domain from Table 25 or 26, e.g., a S.
aureus, S. pyogenes, or C. jejuni Cas9 core domain; and
b) an altered PI domain from a species X Cas9 sequence selected from Tables 28 and
29.
In an embodiment, the RKR motif (the PAM binding motif) of said altered PI domain comprises: differences at 1, 2, or 3 amino acid residues; a difference in amino acid sequence at the first, second, or third position; differences in amino acid sequence at the first and second positions, the first and third positions, or the second and third positions; as compared with the sequence of the RKR motif of the native or endogenous PI domain associated with the Cas9 core domain.
In an embodiment, the Cas9 core domain comprises the Cas9 core domain from a species X Cas9 from Table 25 and said altered PI domain comprises a PI domain from a species Y Cas9 from Table 25.
In an embodiment, the RKR motif of the species X Cas9 is other than the RKR motif of the species Y Cas9.
In an embodiment, the RKR motif of the altered PI domain is selected from XXY, XNG, and XNQ.
In an embodiment, the altered PI domain has at least 60, 70, 80, 90, 95, or 100% homology with the amino acid sequence of a naturally occurring PI domain of said species Y from Table 25. In an embodiment, the altered PI domain differs by no more than 50, 40, 30, 25, 20, 15, 10, 5, 4, 3, 2, or 1 amino acid residue from the amino acid sequence of a naturally occurring PI domain of said second species from Table 25.
In an embodiment, the Cas9 core domain comprises a S. aureus core domain and altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 29.
In an embodiment, the Cas9 core domain comprises a S. pyogenes core domain and the altered PI domain comprises: an A. denitrificans PI domain; a C. jejuni PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 29.
In an embodiment, the Cas9 core domain comprises a C. jejuni core domain and the altered PI domain comprises: an A. denitrificans PI domain; a H. mustelae PI domain; or an altered PI domain of species X PI domain, wherein species X is selected from Table 29.
In an embodiment, the Cas9 molecule or Cas9 polypeptide further comprises a linker disposed between said Cas9 core domain and said altered PI domain.
In an embodiment, the linker comprises: a linker described elsewhere herein disposed between the Cas9 core domain and the heterologous PI domain. Suitable linkers are further described in Section V.
Exemplary altered PI domains for use in Syn-Cas9 molecules are described in Tables
28 and 29. The sequences for the 83 Cas9 orthologs referenced in Tables 28 and 29 are provided in Table 25. Table 27 provides the Cas9 orthologs with known PAM sequences and the corresponding RKR motif.
In an embodiment, a Syn-Cas9 molecule or Syn-Cas9 polypeptide may also be size- optimized, e.g., the Syn-Cas9 molecule or Syn-Cas9 polypeptide comprises one or more deletions, and optionally one or more linkers disposed between the amino acid residues flanking the deletions. In an embodiment, a Syn-Cas9 molecule or Syn-Cas9 polypeptide comprises a REC deletion. Size- Optimized Cas9 Molecules and Cas9 Polypeptides
Engineered Cas9 molecules and engineered Cas9 polypeptides described herein include a Cas9 molecule or Cas9 polypeptide comprising a deletion that reduces the size of the molecule while still retaining desired Cas9 properties, e.g., essentially native
conformation, Cas9 nuclease activity, and/or target nucleic acid molecule recognition. Provided herein are Cas9 molecules or Cas9 polypeptides comprising one or more deletions and optionally one or more linkers, wherein a linker is disposed between the amino acid residues that flank the deletion. Methods for identifying suitable deletions in a reference Cas9 molecule, methods for generating Cas9 molecules with a deletion and a linker, and methods for using such Cas9 molecules will be apparent to one of ordinary skill in the art upon review of this document.
A Cas9 molecule, e.g., a S. aureus, S. pyogenes, or C. jejuni, Cas9 molecule, having a deletion is smaller, e.g., has reduced number of amino acids, than the corresponding naturally-occurring Cas9 molecule. The smaller size of the Cas9 molecules allows increased flexibility for delivery methods, and thereby increases utility for genome-editing. A Cas9 molecule or Cas9 polypeptide can comprise one or more deletions that do not substantially affect or decrease the activity of the resultant Cas9 molecules or Cas9 polypeptides described herein. Activities that are retained in the Cas9 molecules or Cas9 polypeptides comprising a deletion as described herein include one or more of the following:
a nickase activity, i.e., the ability to cleave a single strand, e.g., the non- complementary strand or the complementary strand, of a nucleic acid molecule; a double stranded nuclease activity, i.e., the ability to cleave both strands of a double stranded nucleic acid and create a double stranded break, which in an embodiment is the presence of two nickase activities;
an endonuclease activity;
an exonuclease activity;
a helicase activity, i.e., the ability to unwind the helical structure of a double stranded nucleic acid;
and recognition activity of a nucleic acid molecule, e.g., a target nucleic acid or a gRNA.
Activity of the Cas9 molecules or Cas9 polypeptides described herein can be assessed using the activity assays described herein or in the art.
Identifying regions suitable for deletion
Suitable regions of Cas9 molecules for deletion can be identified by a variety of methods. Naturally-occurring orthologous Cas9 molecules from various bacterial species, e.g., any one of those listed in Table 25, can be modeled onto the crystal structure of S. pyogenes Cas9 (Nishimasu et al., Cell, 156:935-949, 2014) to examine the level of conservation across the selected Cas9 orthologs with respect to the three-dimensional conformation of the protein. Less conserved or unconserved regions that are spatially located distant from regions involved in Cas9 activity, e.g., interface with the target nucleic acid molecule and/or gRNA, represent regions or domains are candidates for deletion without substantially affecting or decreasing Cas9 activity.
REC-Optimized Cas9 Molecules and Cas9 Polypeptides
A REC-optimized Cas9 molecule, or a REC-optimized Cas9 polypeptide, as that term is used herein, refers to a Cas9 molecule or Cas9 polypeptide that comprises a deletion in one or both of the REC2 domain and the REICT domain (collectively a REC deletion), wherein the deletion comprises at least 10% of the amino acid residues in the cognate domain. A REC-optimized Cas9 molecule or Cas9 polypeptide can be an eaCas9 molecule or eaCas9 polypetide, or an eiCas9 molecule or eiCas9 polypeptide. An exemplary REC-optimized Cas9 molecule or REC-optimized Cas9 polypeptide comprises:
a) a deletion selected from:
i) a REC2 deletion;
ii) a RECICT deletion; or
iii) a REC 1 SUB deletion.
Optionally, a linker is disposed between the amino acid residues that flank the deletion. In an embodiment, a Cas9 molecule or Cas9 polypeptide includes only one deletion, or only two deletions. A Cas9 molecule or Cas9 polypeptide can comprise a REC2 deletion and a RECICT deletion. A Cas9 molecule or Cas9 polypeptide can comprise a REC2 deletion and a REC 1 SUB deletion.
Generally, the deletion will contain at least 10% of the amino acids in the cognate domain, e.g., a REC2 deletion will include at least 10% of the amino acids in the REC2 domain. A deletion can comprise: at least 10, 20, 30, 40, 50, 60, 70, 80, or 90% of the amino acid residues of its cognate domain; all of the amino acid residues of its cognate domain; an amino acid residue outside its cognate domain; a plurality of amino acid residues outside its cognate domain; the amino acid residue immediately N terminal to its cognate domain; the amino acid residue immediately C terminal to its cognate domain; the amino acid residue immediately N terminal to its cognate and the amino acid residue immediately C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain; a plurality of, e.g., up to 5, 10, 15, or 20, amino acid residues N terminal to to its cognate domain and a plurality of e.g., up to 5, 10, 15, or 20, amino acid residues C terminal to its cognate domain.
In an embodiment, a deletion does not extend beyond: its cognate domain; the N terminal amino acid residue of its cognate domain; the C terminal amino acid residue of its cognate domain.
A REC-optimized Cas9 molecule or REC-optimized Cas9 polypeptide can include a linker disposed between the amino acid residues that flank the deletion. Any linkers known in the art that maintain the conformation or native fold of the Cas9 molecule (thereby retaining Cas9 activity) can be used between the amino acid resides that flank a REC deletion in a REC-optimized Cas9 molecule or REC-optimized Cas9 polypeptide. Linkers for use in generating recombinant proteins, e.g., multi-domain proteins, are known in the art (Chen et al., Adv Drug Delivery Rev, 65: 1357-69, 2013).
In an embodiment, a REC-optimized Cas9 molecule or REC-optimized Cas9 polypeptide comprises an amino acid sequence that, other than any REC deletion and associated linker, has at least 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99, or 100% homology with the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 25, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
In an embodiment, a a REC-optimized Cas9 molecule or REC-optimized Cas9 polypeptide comprises an amino acid sequence that, other than any REC deletion and associated linker, differs by no more than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 25, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
In an embodiment, a REC-optimized Cas9 molecule or REC-optimized Cas9 polypeptide comprises an amino acid sequence that, other than any REC deletion and associate linker, differs by no more than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, or 25% of the, amino acid residues from the amino acid sequence of a naturally occurring Cas 9, e.g., a Cas9 molecule described in Table 25, e.g., a S. aureus Cas9 molecule, a S. pyogenes Cas9 molecule, or a C. jejuni Cas9 molecule.
For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. Default program parameters can be used, or alternative parameters can be designated. The sequence comparison algorithm then calculates the percent sequence identities for the test sequences relative to the reference sequence, based on the program parameters. Methods of alignment of sequences for comparison are well known in the art. Optimal alignment of sequences for comparison can be conducted, e.g., by the local homology algorithm of Smith and Waterman, (1970) Adv. Appl. Math. 2:482c, by the homology alignment algorithm of Needleman and Wunsch, (1970) J. Mol. Biol. 48:443, by the search for similarity method of Pearson and Lipman, (1988) Proc. Nat'l. Acad. Sci. USA 85:2444, by computerized implementations of these algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, WI), or by manual alignment and visual inspection (see, e.g., Brent et al., (2003) Current Protocols in Molecular Biology).
Two examples of algorithms that are suitable for determining percent sequence identity and sequence similarity are the BLAST and BLAST 2.0 algorithms, which are described in Altschul et al., (1977) Nuc. Acids Res. 25:3389-3402; and Altschul et al., (1990) J. Mol. Biol. 215:403-410, respectively. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information.
The percent identity between two amino acid sequences can also be determined using the algorithm of E. Meyers and W. Miller, (1988) Comput. Appl. Biosci. 4:11-17) which has been incorporated into the ALIGN program (version 2.0), using a PAM120 weight residue table, a gap length penalty of 12 and a gap penalty of 4. In addition, the percent identity between two amino acid sequences can be determined using the Needleman and Wunsch (1970) J. Mol. Biol. 48:444-453) algorithm which has been incorporated into the GAP program in the GCG software package (available at www.gcg.com), using either a Blossom 62 matrix or a PAM250 matrix, and a gap weight of 16, 14, 12, 10, 8, 6, or 4 and a length weight of 1, 2, 3, 4, 5, or 6.
Sequence information for exemplary REC deletions are provided for 83 naturally- occurring Cas9 orthologs in Table 25.
The amino acid sequences of exemplary Cas9 molecules from different bacterial species are shown below.
Table 25. Amino Acid Sequence of Cas9 Orthologs
REC2 ReCsub
RECICT
Species / Composite ID Amino acid J J J sequence (AA (AA delete (AA (AA delete (AA (AA delete pos) pos) d (n) pos) pos) d (n) pos) pos) d (n)
Staphylococcus Aureus SEQ ID NO : 126 166 41 296 352 57 296 352 57 trlJ7 UA5IJ7 UA5_STAAU 304
Streptococcus Pyogenes SEQ ID NO : 176 314 139 511 592 82 511 592 82 splQ99ZW2ICAS9_STRPl 305
Campylobacter jejuni NCTC SEQ ID NO : 137 181 45 316 360 45 316 360 45 11168 306
gil218563121 Irefl YP_00234490
0.1
Bacteroides fragilis NCTC SEQ ID NO : 148 339 192 524 617 84 524 617 84 9343 30 7
gil60683389lreflYP_213533.1l
Bifidobacterium bifidum S17 SEQ ID NO : 173 335 163 516 607 87 516 607 87 gil310286728lreflYP_00393798 308
6.
Veillonella atypica ACS- 134- SEQ ID NO : 185 339 155 574 663 79 574 663 79 V-Col7a 309
gil303229466lreflZP_07316256.
1
Lactobacillus rhamnosus GG SEQ ID NO : 169 320 152 559 645 78 559 645 78 gil258509199lreflYP_00317195 310
0.1
Filifactor alocis ATCC 35896 SEQ ID NO : 166 314 149 508 592 76 508 592 76 gil374307738lreflYP_00505416 311
9.1
Oenococcus kitaharae DSM SEQ ID NO : 169 317 149 555 639 80 555 639 80 17330 312
gil366983953lgblEHN59352.11
Fructobacillus fructosus KCTC SEQ ID NO : 168 314 147 488 571 76 488 571 76
3544 313
gil339625081lreflZP_08660870.
1
Catenibacterium mitsuokai SEQ ID NO : 173 318 146 511 594 78 511 594 78 DSM 15897 314
gil224543312lreflZP_03683851.
1
Finegoldia magna ATCC 29328 SEQ ID NO : 168 313 146 452 534 77 452 534 77 gill69823755lreflYP_00169136 315
6.1
CoriobacteriumglomeransPW2 SEQ ID NO : 175 318 144 511 592 82 511 592 82 gil328956315lreflYP_00437364 316
8.1
Eubacterium yurii ATCC 43715 SEQ ID NO : 169 310 142 552 633 76 552 633 76 gil306821691 lreflZP_07455288. 31 7
1
Peptoniphilus duerdenii ATCC SEQ ID NO : 171 311 141 535 615 76 535 615 76
BAA- 1640 318
gil304438954lreflZP_07398877.
1
Acidaminococcus sp. D21 SEQ ID NO : 167 306 140 511 591 75 511 591 75 gil227824983lreflZP_03989815. 319
1
Lactobacillus farciminis KCTC SEQ ID NO : 171 310 140 542 621 85 542 621 85
3681 320
gil336394882lreflZP_08576281.
1 Streptococcus sanguinis SK49 SEQ ID NO: 185 324 140 41 1 490 85 411 490 85 gil422884106lreflZP_16930555. 321
1
Coprococcus catus GD-7 SEQ ID NO: 172 310 139 556 634 76 556 634 76 gil291520705lemblCBK78998.1 322
1
Streptococcus mutans UA159 SEQ ID NO: 176 314 139 392 470 84 392 470 84 gil24379809lreflNP_721764.1l 323
Streptococcus pyogenes Ml SEQ ID NO: 176 314 139 523 600 82 523 600 82 GAS 324
gill 3622193lgblAAK33936.1 l
Streptococcus thermophilus SEQ ID NO: 176 314 139 481 558 81 481 558 81 LMD-9 325
gil 1 16628213lrefl YP_820832.11
Fusobacteriumnucleatum SEQ ID NO: 171 308 138 537 614 76 537 614 76 ATCC49256 326
gil34762592lreflZP_00143587.1
1
Planococcus antarcticus DSM SEQ ID NO: 162 299 138 538 614 94 538 614 94
14505 327
gil389815359lreflZP_10206685.
1
Treponema denticola ATCC SEQ ID NO: 169 305 137 524 600 81 524 600 81 35405 328
gil42525843lref INP_970941.11
Solobacterium moorei F0204 SEQ ID NO: 179 314 136 544 619 77 544 619 77 gil320528778lreflZP_08029929. 329
1
Staphylococcus SEQ ID NO: 164 299 136 531 606 92 531 606 92 pseudintermedius ED99 330
gil323463801lgblADX75954.1l
Flavobacterium branchiophilum SEQ ID NO: 162 286 125 538 613 63 538 613 63
FL-15 331
gil347536497lreflYP_00484392
2.1
Ignavibacterium album JCM SEQ ID NO: 223 329 107 357 432 90 357 432 90 16511 332
gil38581 1609lreflYP 00584800
5.1
Bergeyella zoohelcum ATCC SEQ ID NO: 165 261 97 529 604 56 529 604 56
43767 333
gil423317190lreflZP_17295095.
1
Nitrobacter hamburgensis X14 SEQ ID NO: 169 253 85 536 611 48 536 611 48 gil92109262lref 1 YP_571550.11 334
Odoribacter laneus YIT 12061 SEQ ID NO: 164 242 79 535 610 63 535 610 63 gil374384763lrellZP_09642280. 335
1
Legionella pneumophila str. SEQ ID NO: 164 239 76 402 476 67 402 476 67
Paris 336
gil54296138lreflYP_122507.1l
Bacteroides sp. 20 3 SEQ ID NO: 198 269 72 530 604 83 530 604 83 gil301311869lreflZP_07217791. 337
1
Akkermansia muciniphila SEQ ID NO: 136 202 67 348 418 62 348 418 62 ATCC BAA-835 338
gill 87736489lreflYP_00187860
1. Prevotella sp. C561 SEQ ID NO: 184 250 67 357 425 78 357 425 78 gil345885718lreflZP_08837074. 339
1
Wolinella succinogenes DSM SEQ ID NO: 157 218 36 401 468 60 401 468 60
1740 340
gil34557932lreflNP_907747.1l
Alicyclobacillus hesperidum SEQ ID NO: 142 196 55 416 482 61 416 482 61 U H17-3-68 341
gil403744858lreflZP_10953934.
1
Caenispirillum salinarum AK4 SEQ ID NO: 161 214 54 330 393 68 330 393 68 gil427429481 lreflZP_l 8919511. 342
1
Eubacterium rectale ATCC SEQ ID NO: 133 185 53 322 384 60 322 384 60 33656 343
gil238924075lreflYP_00293759
1.1
Mycoplasma synoviae 53 SEQ ID NO: 187 239 53 319 381 80 319 381 80 gil71894592lref 1 YP_278700.11 344
Porphyromonas sp. oral taxon SEQ ID NO: 150 202 53 309 371 60 309 371 60
279 str. F0450 345
gil402847315lreflZP_10895610.
1
Streptococcus thermophilus SEQ ID NO: 127 178 139 424 486 81 424 486 81 LMD-9 346
gil 116627542lrefl YP_820161.11
Roseburia inulinivorans DSM SEQ ID NO: 154 204 51 318 380 69 318 380 69
16841 347
gil225377804lreflZP_03755025.
1
Methylosinus trichosporium SEQ ID NO: 144 193 50 426 488 64 426 488 64 OB 3b 348
gil296446027lreflZP_06887976.
1
Ruminococcus albus 8 SEQ ID NO: 139 187 49 351 412 55 351 412 55 gil325677756lreflZP_08157403. 349
1
Bifidobacterium longum SEQ ID NO: 183 230 48 370 431 44 370 431 44 DJO10A 350
gill89440764lreflYP_00195584
5.
Enterococcus faecalis TX0012 SEQ ID NO: 123 170 48 327 387 60 327 387 60 gil315149830lgblEFT93846.11 351
Mycoplasma mobile 163K SEQ ID NO: 179 226 48 314 374 79 314 374 79 gil47458868lreflYP_015730.1l 352
Actinomyces coleocanis DSM SEQ ID NO: 147 193 47 358 418 40 358 418 40
15436 353
gil227494853lreflZP_03925169.
1
Dinoroseobacter shibae DFL 12 SEQ ID NO: 138 184 47 338 398 48 338 398 48 gil 159042956lrefl YP_00153175 354
0.1
Actinomyces sp. oral taxon 180 SEQ ID NO: 183 228 46 349 409 40 349 409 40 str. F0310 355
gil315605738lreflZP_07880770.
1
Alcanivorax sp. Wl l-5 SEQ ID NO: 139 183 45 344 404 61 344 404 61
356 gil407803669lreflZP_l 1 150502.
1
Aminomonas paucivorans DSM SEQ ID NO: 134 178 45 341 401 63 341 401 63
12260 357
gil312879015lreflZP_07738815.
1
Mycoplasma canis PG 14 SEQ ID NO: 139 183 45 319 379 76 319 379 76 gil384393286lgblEIE39736.11 358
Lactobacillus coryniformis SEQ ID NO: 141 184 44 328 387 61 328 387 61 KCTC 3535 359
gil336393381lreflZP_08574780.
1
Elusimicrobium minutum SEQ ID NO: 177 219 43 322 381 47 322 381 47 Peil91 360
gill87250660lreflYP_00187514
2.1
Neisseria meningitidis Z2491 SEQ ID NO: 147 189 43 360 419 61 360 419 61 gil218767588lreflYP_00234210 361
0.1
Pasteurella multocida str. Pm70 SEQ ID NO: 139 181 43 319 378 61 319 378 61 gil 15602992lref INP_246064.11 362
Rhodovulum sp. PH10 SEQ ID NO: 141 183 43 319 378 48 319 378 48 gil402849997lrellZP_10898214. 363
1
Eubacterium dolichum DSM SEQ ID NO: 131 172 42 303 361 59 303 361 59
3991 364
gil 160915782lreflZP_02077990.
1
Nitratifractor salsuginis DSM SEQ ID NO: 143 184 42 347 404 61 347 404 61
1651 1 365
gil319957206lrellYP_00416846
9.1
Rhodospirillum rubrum ATCC SEQ ID NO: 139 180 42 314 371 55 314 371 55
11170 366
gil83591793lreflYP_425545.1l
Clostridium cellulolyticum H10 SEQ ID NO: 137 176 40 320 376 61 320 376 61 gil220930482lrellYP_00250739 367
1.1
Helicobacter mu stelae 12198 SEQ ID NO: 148 187 40 298 354 48 298 354 48 gil291276265lrefl YP_003 1603 368
7.1
Ilyobacter polytropus DSM SEQ ID NO: 134 173 40 462 517 63 462 517 63 2926 369
gil310780384lrellYP_00396871
6.1
Sphaerochaeta globus str. SEQ ID NO: 163 202 40 335 389 45 335 389 45 Buddy 370
gil325972003lrellYP_00424819
4.1
Staphylococcus lugdunensis SEQ ID NO: 128 167 40 337 391 57 337 391 57 M23590 371
gil315659848lretlZP_07912707.
1
Treponema sp. JC4 SEQ ID NO: 144 183 40 328 382 63 328 382 63 gil384109266lrellZP_10010146. 372
1
uncultured delta SEQ ID NO: 154 193 40 313 365 55 313 365 55 proteobacterium HF0070 373 07E19
gil297182908lgbl ADI19058.11
Alicycliphilus denitrificans SEQ ID NO: 140 178 39 317 366 48 317 366 48 K601 374
gil330822845lreflYP_00438614
8.1
Azospirillum sp. B510 SEQ ID NO: 205 243 39 342 389 46 342 389 46 gil288957741lreflYP_00344808 375
2.1
Bradyrhizobium sp. BTAil SEQ ID NO: 143 181 39 323 370 48 323 370 48 gill48255343lreflYP_00123992 376
8.1
Parvibaculum lavamentivorans SEQ ID NO: 138 176 39 327 374 58 327 374 58
DS-1 377
gill54250555lreflYP_00141137
9.1
Prevotella timonensis C IS 5C- SEQ ID NO: 170 208 39 328 375 61 328 375 61
Bl 378
gil282880052lreflZP_06288774.
1
Bacillus smithii 7 3 47FAA SEQ ID NO: 134 171 38 401 448 63 401 448 63 gil365156657lreflZP_09352959. 379
1
Cand. Puniceispirillum SEQ ID NO: 135 172 38 344 391 53 344 391 53 marinum IMCC1322 380
gil294086111lreflYP_00355287
1.1
Barnesiella intestinihominis SEQ ID NO: 140 176 37 371 417 60 371 417 60 YIT 11860 381
gil404487228lreflZP_l 1022414.
1
Ralstonia syzygii R24 SEQ ID NO: 140 176 37 395 440 50 395 440 50 gil344171927lemblCCA84553.1 382
1
Wolinella succinogenes DSM SEQ ID NO: 145 180 36 348 392 60 348 392 60
1740 383
gil34557790lref INP_907605.11
Mycoplasma gallisepticum str. SEQ ID NO: 144 177 34 373 416 71 373 416 71
F 384
gil284931710lgblADC31648.1l
Acidothermus cellulolyticus SEQ ID NO: 150 182 33 341 380 58 341 380 58
11B 385
gil 117929158lreflYP_873709.11
Mycoplasma ovipneumoniae SEQ ID NO: 156 184 29 381 420 62 381 420 62
SCOl 386
gil363542550lreflZP_09312133.
1
Table 26. Amino Acid Sequence of Cas9 Core Domains
Figure imgf000523_0001
Table 27. Identified PAM sequences and corresponding RKR motifs.
Figure imgf000524_0001
PI domains are provided in Tables 28 and 29.
Table 28. Altered PI Domains
Figure imgf000524_0002
Table 29. Other Altered PI Domains
Figure imgf000524_0003
Mycoplasma canis PG 14 907 1233 327 EPK
Porphyromonas sp. oral taxon 279 str. F0450 935 1197 263 EPT
Filifactor alocis ATCC 35896 1094 1365 272 EVD
Aminomonas paucivorans DSM 12260 801 1052 252 EVY
Wolinella succinogenes DSM 1740 1034 1409 376 EYK
Oenococcus kitaharae DSM 17330 1119 1389 271 GAL
CoriobacteriumglomeransPW2 1126 1384 259 GDR
Peptoniphilus duerdenii ATCC BAA- 1640 1091 1364 274 GDS
Bifidobacterium bifidum S17 1138 1420 283 GGL
Alicyclobacillus hesperidum URH17-3-68 876 1146 271 GGR
Roseburia inulinivorans DSM 16841 895 1152 258 GGT
Actinomyces coleocanis DSM 15436 843 1105 263 GKK
Odoribacter laneus YIT 12061 1103 1498 396 GKV
Coprococcus catus GD-7 1063 1338 276 GNQ
Enterococcus faecalis TX0012 829 1150 322 GRK
Bacillus smithii 7 3 47FAA 809 1088 280 GSK
Legionella pneumophila str. Paris 1021 1372 352 GTM
Bacteroides fragilis NCTC 9343 1140 1436 297 IPV
Mycoplasma ovipneumoniae SCOl 923 1265 343 IRI
Actinomyces sp. oral taxon 180 str. F0310 895 1181 287 KEK
Treponema sp. JC4 832 1062 231 KIS
Fusobacteriumnucleatum ATCC49256 1073 1374 302 KKV
Lactobacillus farciminis KCTC 3681 1101 1356 256 KKV
Nitratifractor salsuginis DSM 16511 840 1132 293 KMR
Lactobacillus coryniformis KCTC 3535 850 1119 270 KNK
Mycoplasma mobile 163K 916 1236 321 KNY
Flavobacterium branchiophilum FL-15 1182 1473 292 KQK
Prevotella timonensis CRIS 5C-B1 957 1218 262 KQQ
Methylosinus trichosporium OB 3b 830 1082 253 KRP
Prevotella sp. C561 1099 1424 326 KRY
Mycoplasma gallisepticum str. F 911 1269 359 KTA
Lactobacillus rhamnosus GG 1077 1363 287 KYG
Wolinella succinogenes DSM 1740 811 1059 249 LPN
Streptococcus thermophilus LMD-9 1099 1388 290 MLA
Treponema denticola ATCC 35405 1092 1395 304 NDS
Bergeyella zoohelcum ATCC 43767 1098 1415 318 NEK
Veillonella atypica ACS-134-V-Col7a 1107 1398 292 NGF
Neisseria meningitidis Z2491 835 1082 248 NHN
Ignavibacterium album JCM 16511 1296 1688 393 NKK
Ruminococcus albus 8 853 1156 304 NNF
Streptococcus thermophilus LMD-9 811 1121 311 NNK
Barnesiella intestinihominis YIT 11860 871 1153 283 NPV Azospirillum sp. B510 911 1168 258 PFH
R odospirillum rubrum ATCC 11170 863 1173 311 PRO
Planococcus antarcticus DSM 14505 1087 1333 247 PYY
Staphylococcus pseudintermedius ED99 1073 1334 262 QIV
Alcanivorax sp. Wll-5 843 1113 271 RIE
Bradyrhizobium sp. BTAil 811 1064 254 RIY
Streptococcus pyogenes M 1 GAS 1099 1368 270 RKR
Streptococcus mutans UA159 1078 1345 268 RKR
Streptococcus Pyogenes 1099 1368 270 RKR
Bacteroides sp. 20 3 1147 1517 371 RNI
S. aureus 772 1053 282 RNK
Solobacterium moorei F0204 1062 1327 266 RSG
Finegoldia magna ATCC 29328 1081 1348 268 RTE uncultured delta proteobacterium HF0070 07E19 770 1011 242 SGG
Acidaminococcus sp. D21 1064 1358 295 SIG
Eubacterium rectale ATCC 33656 824 1114 291 SKK
Caenispirillum salinarum AK4 1048 1442 395 SLV
Acidothermus cellulolyticus 1 IB 830 1138 309 SPS
Catenibacterium mitsuokai DSM 15897 1068 1329 262 SPT
Parvibaculum lavamentivorans DS-1 827 1037 211 TGN
Staphylococcus lugdunensis M23590 772 1054 283 TKK
Streptococcus sanguinis SK49 1123 1421 299 TRM
Elusimicrobium minutum Peil91 910 1195 286 TTG
Nitrobacter hamburgensis X14 914 1166 253 VAY
Mycoplasma synoviae 53 991 1314 324 VGF
Sphaerochaeta globus str. Buddy 877 1179 303 VKG
Ilyobacter polytropus DSM 2926 837 1092 256 VNG
Rhodovulum sp. PH10 821 1059 239 VPY
Bifidobacterium longum DJO10A 904 1187 284 VRK
Amino acid sequences described in Table 25:
SEQ ID NO: 304
MKRNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRH RIQRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEV EEDTGNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKV QKAYHQLDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVK YAYNADLYNALNDLNNLVITRDENEKLEYYEKFQI IENVFKQKKKPTLKQIAKEILVNEEDI KGYRVTSTGKPEFTNLKVYHDIKDITARKEI IENAELLDQIAKILTIYQSSEDIQEELTNLN SELTQEEIEQISNLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQK EIPTTLVDDFILSPVVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMINEMQK RNRQTNERIEEIIRTTGKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHI IPRSVSFDNSFNNKVLVKQEENSKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISK TKKEYLLEERDINRFSVQKDFINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTS FLRRKWKFKKERNKGYKHHAEDALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEI ETEQEYKEIFITPHQIKHIKDFKDYKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLN GLYDKDNDKLKKLINKSPEKLLMYHHDPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKY SKKDNGPVIKKIKYYGNKLNAHLDITDDYPNSRNKWKLSLKPYRFDVYLDNGVYKFVTVKN LDVIKKENYYEVNSKCYEEAKKLKKISNQAEFIASFYNNDLIKINGELYRVIGVNNDLLNRI EVNMIDITYREYLENMNDKRPPRIIKTIASKTQSIKKYSTDILGNLYEVKSKKHPQIIKKG
SEQ ID NO: 305
MDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEAT RLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVD EVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFI QLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGL TPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNT EITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEF YKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLK DNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMT NFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRK VTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIV LTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDF LKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKW DELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQL QNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSD NVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKH VAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAV VGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLAN GEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNS DKLIARKKDWDPKKYGGFDSPTVAYSVLWAKVEKGKSKKLKSVKELLGITIMERSSFEKNP IDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLAS HYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPI REQAENI IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQ LGGD
SEQ ID NO: 306
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRK ARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILH IAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRN KKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSF FTDEKRAPKNSPLAFMFVALTRI INLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTK KLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKAL AKYDLNQNQIDSLSKLEFKDHLNISFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDF LPAFNETYYKDEVTNPWLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEK EQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEID HIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRIL DKNYKDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK SGMLTSALRHTWGFSAKDRNNHLHHAIDAVI IAYANNSIVKAFSDFKKEQESNSAELYAKKI SELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKE GVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSK KGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFET LSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
SEQ ID NO: 307
MKRILGLDLGTNSIGWALVNEAENKDERSSIVKLGVRVNPLTVDELTNFEKGKSITTNADRT LKRGMRRNLQRYKLRRETLTEVLKEHKLITEDTILSENGNRTTFETYRLRAKAVTEEISLEE FARVLLMINKKRGYKSSRKAKGVEEGTLIDGMDIARELYNNNLTPGELCLQLLDAGKKFLPD FYRSDLQNELDRIWEKQKEYYPEILTDVLKEELRGKKRDAVWAICAKYFVWKENYTEWNKEK GKTEQQEREHKLEGIYSKRKRDEAKRENLQWRVNGLKEKLSLEQLVIVFQEMNTQINNSSGY LGAISDRSKELYFNKQTVGQYQMEMLDKNPNASLRNMVFYRQDYLDEFNMLWEKQAVYHKEL TEELKKEIRDI IIFYQRRLKSQKGLIGFCEFESRQIEVDIDGKKKIKTVGNRVISRSSPLFQ EFKIWQILNNIEVTVVGKKRKRRKLKENYSALFEELNDAEQLELNGSRRLCQEEKELLAQEL FIRDKMTKSEVLKLLFDNPQELDLNFKTIDGNKTGYALFQAYSKMIEMSGHEPVDFKKPVEK WEYIKAVFDLLNWNTDILGFNSNEELDNQPYYKLWHLLYSFEGDNTPTGNGRLIQKMTELY GFEKEYATILANVSFQDDYGSLSAKAIHKILPHLKEGNRYDVACVYAGYRHSESSLTREEIA NKVLKDRLMLLPKNSLHNPWEKILNQMVNVINVI IDIYGKPDEIRVELARELKKNAKEREE LTKSIAQTTKAHEEYKTLLQTEFGLTNVSRTDILRYKLYKELESCGYKTLYSNTYISREKLF SKEFDIEHIIPQARLFDDSFSNKTLEARSVNIEKGNKTAYDFVKEKFGESGADNSLEHYLNN IEDLFKSGKISKTKYNKLKMAEQDIPDGFIERDLRNTQYIAKKALSMLNEISHRVVATSGSV TDKLREDWQLIDVMKELNWEKYKALGLVEYFEDRDGRQIGRIKDWTKRNDHRHHAMDALTVA FTKDVFIQYFNNKNASLDPNANEHAIKNKYFQNGRAIAPMPLREFRAEAKKHLENTLISIKA KNKVITGNINKTRKKGGVNKNMQQTPRGQLHLETIYGSGKQYLTKEEKVNASFDMRKIGTVS KSAYRDALLKRLYENDNDPKKAFAGKNSLDKQPIWLDKEQMRKVPEKVKIVTLEAIYTIRKE ISPDLKVDKVIDVGVRKILIDRLNEYGNDAKKAFSNLDKNPIWLNKEKGISIKRVTISGISN AQSLHVKKDKDGKPILDENGRNIPVDFVNTGNNHHVAVYYRPVIDKRGQLVVDEAGNPKYEL EEVWSFFEAVTRANLGLPIIDKDYKTTEGWQFLFSMKQNEYFVFPNEKTGFNPKEIDLLDV ENYGLISPNLFRVQKFSLKNYVFRHHLETTIKDTSSILRGITWIDFRSSKGLDTIVKVRVNH IGQIVSVGEY
SEQ ID NO: 308
MSRKNYVDDYAISLDIGNASVGWSAFTPNYRLVRAKGHELIGVRLFDPADTAESRRMARTTR RRYSRRRWRLRLLDALFDQALSEIDPSFLARRKYSWVHPDDENNADCWYGSVLFDSNEQDKR FYEKYPTIYHLRKALMEDDSQHDIREIYLAIHHMVKYRGNFLVEGTLESSNAFKEDELLKLL GRITRYEMSEGEQNSDIEQDDENKLVAPANGQLADALCATRGSRSMRVDNALEALSAVNDLS REQRAIVKAIFAGLEGNKLDLAKIFVSKEFSSENKKILGIYFNKSDYEEKCVQIVDSGLLDD EEREFLDRMQGQYNAIALKQLLGRSTSVSDSKCASYDAHRANWNLIKLQLRTKENEKDINEN YGILVGWKIDSGQRKSVRGESAYENMRKKANVFFKKMIETSDLSETDKNRLIHDIEEDKLFP IQRDSDNGVIPHQLHQNELKQIIKKQGKYYPFLLDAFEKDGKQINKIEGLLTFRVPYFVGPL WPEDLQKSDNSENHWMVRKKKGEITPWNFDEMVDKDASGRKFIERLVGTDSYLLGEPTLPK NSLLYQEYEVLNELNNVRLSVRTGNHWNDKRRMRLGREEKTLLCQRLFMKGQTVTKRTAENL LRKEYGRTYELSGLSDESKFTSSLSTYGKMCRIFGEKYVNEHRDLMEKIVELQTVFEDKETL LHQLRQLEGISEADCALLVNTHYTGWGRLSRKLLTTKAGECKISDDFAPRKHSIIEIMRAED RNLMEIITDKQLGFSDWIEQENLGAENGSSLMEWDDLRVSPKVKRGIIQSIRLIDDISKAV GKRPSRIFLELADDIQPSGRTISRKSRLQDLYRNANLGKEFKGIADELNACSDKDLQDDRLF LYYTQLGKDMYTGEELDLDRLSSAYDIDHIIPQAVTQNDSIDNRVLVARAENARKTDSFTYM PQIADRMRNFWQILLDNGLISRVKFERLTRQNEFSEREKERFVQRSLVETRQIMKNVATLMR QRYGNSAAVIGLNAELTKEMHRYLGFSHKNRDINDYHHAQDALCVGIAGQFAANRGFFADGE VSDGAQNSYNQYLRDYLRGYREKLSAEDRKQGRAFGFIVGSMRSQDEQKRVNPRTGEWWSE EDKDYLRKVMNYRKMLVTQKVGDDFGALYDETRYAATDPKGIKGIPFDGAKQDTSLYGGFSS AKPAYAVLIESKGKTRLVNVTMQEYSLLGDRPSDDELRKVLAKKKSEYAKANILLRHVPKMQ LIRYGGGLMVIKSAGELNNAQQLWLPYEEYCYFDDLSQGKGSLEKDDLKKLLDSILGSVQCL YPWHRFTEEELADLHVAFDKLPEDEKKNVITGIVSALHADAKTANLSIVGMTGSWRRMNNKS GYTFSDEDEFIFQSPSGLFEKRVTVGELKRKAKKEVNSKYRTNEKRLPTLSGASQP
SEQ ID NO: 309
METQTSNQLITSHLKDYPKQDYFVGLDIGTNSVGWAVTNTSYELLKFHSHKMWGSRLFEEGE SAVTRRGFRSMRRRLERRKLRLKLLEELFADAMAQVDSTFFIRLHESKYHYEDKTTGHSSKH ILFIDEDYTDQDYFTEYPTIYHLRKDLMENGTDDIRKLFLAVHHILKYRGNFLYEGATFNSN AFTFEDVLKQALVNITFNCFDTNSAISSISNILMESGKTKSDKAKAIERLVDTYTVFDEVNT PDKPQKEQVKEDKKTLKAFANLVLGLSANLIDLFGSVEDIDDDLKKLQIVGDTYDEKRDELA KVWGDEIHIIDDCKSVYDAIILMSIKEPGLTISQSKVKAFDKHKEDLVILKSLLKLDRNVYN EMFKSDKKGLHNYVHYIKQGRTEETSCSREDFYKYTKKIVEGLADSKDKEYILNEIELQTLL PLQRIKDNGVIPYQLHLEELKVILDKCGPKFPFLHTVSDGFSVTEKLIKMLEFRIPYYVGPL NTHHNIDNGGFSWAVRKQAGRVTPWNFEEKIDREKSAAAFIKNLTNKCTYLFGEDVLPKSSL LYSEFMLLNELNNVRIDGKALAQGVKQHLIDSIFKQDHKKMTKNRIELFLKDNNYITKKHKP EITGLDGEIKNDLTSYRDMVRILGNNFDVSMAEDI ITDITIFGESKKMLRQTLRNKFGSQLN DETIKKLSKLRYRDWGRLSKKLLKGIDGCDKAGNGAPKTIIELMRNDSYNLMEILGDKFSFM ECIEEENAKLAQGQVVNPHDIIDELALSPAVKRAVWQALRIVDEVAHIKKALPSRIFVEVAR TNKSEKKKKDSRQKRLSDLYSAIKKDDVLQSGLQDKEFGALKSGLANYDDAALRSKKLYLYY TQMGRCAYTGNIIDLNQLNTDNYDIDHIYPRSLTKDDSFDNLVLCERTANAKKSDIYPIDNR IQTKQKPFWAFLKHQGLISERKYERLTRIAPLTADDLSGFIARQLVETNQSVKATTTLLRRL YPDIDWFVKAENVSDFRHNNNFIKVRSLNHHHHAKDAYLNIVVGNVYHEKFTRNFRLFFKK NGANRTYNLAKMFNYDVICTNAQDGKAWDVKTSMNTVKKMMASNDVRVTRRLLEQSGALADA TIYKASVAAKAKDGAYIGMKTKYSVFADVTKYGGMTKIKNAYSIIVQYTGKKGEEIKEIVPL PIYLINRNATDIELIDYVKSVIPKAKDISIKYRKLCINQLVKVNGFYYYLGGKTNDKIYIDN AIELWPHDIATYIKLLDKYDLLRKENKTLKASSITTSIYNINTSTVVSLNKVGIDVFDYFM SKLRTPLYMKMKGNKVDELSSTGRSKFIKMTLEEQSIYLLEVLNLLTNSKTTFDVKPLGITG SRSTIGVKIHNLDEFKIINESITGLYSNEVTIV
SEQ ID NO: 310
MTKLNQPYGIGLDIGSNSIGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRR LSRTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEISPKDKDRFKYEKRLFNDRTDAEFYEDY PSMYHLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEA YAQVYPDLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEF AKAITGLKTKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRA RLLNGIVPAGMSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKP FLREDFVKALTKEVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPIQLQQRELDQIIANQ SKYYDWLAAPNPVEAHRWKMPYQLDELLNFHIPYYVGPLITPKQQAESGENVFAWMVRKDPS GNITPYNFDEKVDREASANTFIQRMKTTDTYLIGEDVLPKQSLLYQKYEVLNELNNVRINNE CLGTDQKQRLIREVFERHSSVTIKQVADNLVAHGDFARRPEIRGLADEKRFLSSLSTYHQLK EILHEAIDDPTKLLDIENI ITWSTVFEDHTIFETKLAEIEWLDPKKINELSGIRYRGWGQFS RKLLDGLKLGNGHTVIQELMLSNHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTS PSNKKALRQVLRWEDIKHAANGQDPSWLFIETADGTGTAGKRTQSRQKQIQTVYANAAQEL IDSAVRGELEDKIADKASFTDRLVLYFMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDD SLDNRVLVNATINREKNNVFASTLFAGKMKATWRKWHEAGLISGRKLRNLMLRPDEIDKFAK GFVARQLVETRQIIKLTEQIAAAQYPNTKIIAVKAGLSHQLREELDFPKNRDVNHYHHAFDA FLAARIGTYLLKRYPKLAPFFTYGEFAKVDVKKFREFNFIGALTHAKKNIIAKDTGEIVWDK ERDIRELDRIYNFKRMLITHEVYFETADLFKQTIYAAKDSKERGGSKQLIPKKQGYPTQVYG GYTQESGSYNALVRVAEADTTAYQVIKISAQNASKIASANLKSREKGKQLLNEIVVKQLAKR RKNWKPSANSFKIVIPRFGMGTLFQNAKYGLFMVNSDTYYRNYQELWLSRENQKLLKKLFSI KYEKTQMNHDALQVYKAIIDQVEKFFKLYDINQFRAKLSDAIERFEKLPINTDGNKIGKTET LRQILIGLQANGTRSNVKNLGIKTDLGLLQVGSGIKLDKDTQIVYQSPSGLFKRRIPLADL
SEQ ID NO: 311
MTKEYYLGLDVGTNSVGWAVTDSQYNLCKFKKKDMWGIRLFESANTAKDRRLQRGNRRRLER KKQRIDLLQEIFSPEICKIDPTFFIRLNESRLHLEDKSNDFKYPLFIEKDYSDIEYYKEFPT IFHLRKHLIESEEKQDIRLIYLALHNI IKTRGHFLIDGDLQSAKQLRPILDTFLLSLQEEQN LSVSLSENQKDEYEEILKNRSIAKSEKVKKLKNLFEISDELEKEEKKAQSAVIENFCKFIVG NKGDVCKFLRVSKEELEIDSFSFSEGKYEDDIVKNLEEKVPEKVYLFEQMKAMYDWNILVDI LETEEYISFAKVKQYEKHKTNLRLLRDIILKYCTKDEYNRMFNDEKEAGSYTAYVGKLKKNN KKYWIEKKRNPEEFYKSLGKLLDKIEPLKEDLEVLTMMIEECKNHTLLPIQKNKDNGVIPHQ VHEVELKKILENAKKYYSFLTETDKDGYSWQKIESIFRFRIPYYVGPLSTRHQEKGSNVWM VRKPGREDRIYPWNMEEIIDFEKSNENFITRMTNKCTYLIGEDVLPKHSLLYSKYMVLNELN NVKVRGKKLPTSLKQKVFEDLFENKSKVTGKNLLEYLQIQDKDIQIDDLSGFDKDFKTSLKS YLDFKKQIFGEEIEKESIQNMIEDIIKWITIYGNDKEMLKRVIRANYSNQLTEEQMKKITGF QYSGWGNFSKMFLKGISGSDVSTGETFDIITAMWETDNNLMQILSKKFTFMDNVEDFNSGKV GKIDKITYDSTVKEMFLSPENKRAVWQTIQVAEEIKKVMGCEPKKIFIEMARGGEKVKKRTK SRKAQLLELYAACEEDCRELIKEIEDRDERDFNSMKLFLYYTQFGKCMYSGDDIDINELIRG NSKWDRDHIYPQSKIKDDSIDNLVLVNKTYNAKKSNELLSEDIQKKMHSFWLSLLNKKLITK SKYDRLTRKGDFTDEELSGFIARQLVETRQSTKAIADIFKQIYSSEVVYVKSSLVSDFRKKP LNYLKSRRVNDYHHAKDAYLNIVVGNVYNKKFTSNPIQWMKKNRDTNYSLNKVFEHDWING EVIWEKCTYHEDTNTYDGGTLDRIRKIVERDNILYTEYAYCEKGELFNATIQNKNGNSTVSL KKGLDVKKYGGYFSANTSYFSLIEFEDKKGDRARHIIGVPIYIANMLEHSPSAFLEYCEQKG YQNVRILVEKIKKNSLLIINGYPLRIRGENEVDTSFKRAIQLKLDQKNYELVRNIEKFLEKY VEKKGNYPIDENRDHITHEKMNQLYEVLLSKMKKFNKKGMADPSDRIEKSKPKFIKLEDLID KINVINKMLNLLRCDNDTKADLSLIELPKNAGSFVVKKNTIGKSKIILVNQSVTGLYENRRE L
SEQ ID NO: 312
MARDYSVGLDIGTSSVGWAAIDNKYHLIRAKSKNLIGVRLFDSAVTAEKRRGYRTTRRRLSR RHWRLRLLNDIFAGPLTDFGDENFLARLKYSWVHPQDQSNQAHFAAGLLFDSKEQDKDFYRK YPTIYHLRLALMNDDQKHDLREVYLAIHHLVKYRGHFLIEGDVKADSAFDVHTFADAIQRYA ESNNSDENLLGKIDEKKLSAALTDKHGSKSQRAETAETAFDILDLQSKKQIQAILKSWGNQ ANLMAIFGLDSSAISKDEQKNYKFSFDDADIDEKIADSEALLSDTEFEFLCDLKAAFDGLTL KMLLGDDKTVSAAMVRRFNEHQKDWEYIKSHIRNAKNAGNGLYEKSKKFDGINAAYLALQSD NEDDRKKAKKIFQDEISSADIPDDVKADFLKKIDDDQFLPIQRTKNNGTIPHQLHRNELEQI IEKQGIYYPFLKDTYQENSHELNKITALINFRVPYYVGPLVEEEQKIADDGKNIPDPTNHWM VRKSNDTITPWNLSQWDLDKSGRRFIERLTGTDTYLIGEPTLPKNSLLYQKFDVLQELNNI RVSGRRLDIRAKQDAFEHLFKVQKTVSATNLKDFLVQAGYISEDTQIEGLADVNGKNFNNAL TTYNYLVSVLGREFVENPSNEELLEEITELQTVFEDKKVLRRQLDQLDGLSDHNREKLSRKH YTGWGRISKKLLTTKIVQNADKIDNQTFDVPRMNQSIIDTLYNTKMNLMEI INNAEDDFGVR AWIDKQNTTDGDEQDVYSLIDELAGPKEIKRGIVQSFRILDDITKAVGYAPKRVYLEFARKT QESHLTNSRKNQLSTLLKNAGLSELVTQVSQYDAAALQNDRLYLYFLQQGKDMYSGEKLNLD NLSNYDIDHIIPQAYTKDNSLDNRVLVSNITNRRKSDSSNYLPALIDKMRPFWSVLSKQGLL SKHKFANLTRTRDFDDMEKERFIARSLVETRQIIKNVASLIDSHFGGETKAVAIRSSLTADM RRYVDIPKNRDINDYHHAFDALLFSTVGQYTENSGLMKKGQLSDSAGNQYNRYIKEWIHAAR LNAQSQRVNPFGFWGSMRNAAPGKLNPETGEITPEENADWSIADLDYLHKVMNFRKITVTR RLKDQKGQLYDESRYPSVLHDAKSKASINFDKHKPVDLYGGFSSAKPAYAALIKFKNKFRLV NVLRQWTYSDKNSEDYILEQIRGKYPKAEMVLSHIPYGQLVKKDGALVTISSATELHNFEQL WLPLADYKLINTLLKTKEDNLVDILHNRLDLPEMTIESAFYKAFDSILSFAFNRYALHQNAL VKLQAHRDDFNALNYEDKQQTLERILDALHASPASSDLKKINLSSGFGRLFSPSHFTLADTD EFIFQSVTGLFSTQKTVAQLYQETK
SEQ ID NO: 313
MVYDVGLDIGTGSVGWVALDENGKLARAKGKNLVGVRLFDTAQTAADRRGFRTTRRRLSRRK WRLRLLDELFSAEINEIDSSFFQRLKYSYVHPKDEENKAHYYGGYLFPTEEETKKFHRSYPT IYHLRQELMAQPNKRFDIREIYLAIHHLVKYRGHFLSSQEKITIGSTYNPEDLANAIEVYAD EKGLSWELNNPEQLTEIISGEAGYGLNKSMKADEALKLFEFDNNQDKVAIKTLLAGLTGNQI DFAKLFGKDISDKDEAKLWKLKLDDEALEEKSQTILSQLTDEEIELFHAWQAYDGFVLIGL LNGADSVSAAMVQLYDQHREDRKLLKSLAQKAGLKHKRFSEIYEQLALATDEATIKNGISTA RELVEESNLSKEVKEDTLRRLDENEFLPKQRTKANSVIPHQLHLAELQKILQNQGQYYPFLL DTFEKEDGQDNKIEELLRFRIPYYVGPLVTKKDVEHAGGDADNHWVERNEGFEKSRVTPWNF DKVFNRDKAARDFIERLTGNDTYLIGEKTLPQNSLRYQLFTVLNELNNVRVNGKKFDSKTKA DLINDLFKARKTVSLSALKDYLKAQGKGDVTITGLADESKFNSSLSSYNDLKKTFDAEYLEN EDNQETLEKIIEIQTVFEDSKIASRELSKLPLDDDQVKKLSQTHYTGWGRLSEKLLDSKIID ERGQKVSILDKLKSTSQNFMSIINNDKYGVQAWITEQNTGSSKLTFDEKVNELTTSPANKRG IKQSFAVLNDIKKAMKEEPRRVYLEFAREDQTSVRSVPRYNQLKEKYQSKSLSEEAKVLKKT LDGNKNKMSDDRYFLYFQQQGKDMYTGRPINFERLSQDYDIDHIIPQAFTKDDSLDNRVLVS RPENARKSDSFAYTDEVQKQDGSLWTSLLKSGFINRKKYERLTKAGKYLDGQKTGFIARQLV ETRQ11KNVASLIEGEYENSKAVAIRSEITADMRLLVGIKKHREINSFHHAFDALLITAAGQ YMQNRYPDRDSTNVYNEFDRYTNDYLKNLRQLSSRDEVRRLKSFGFVVGTMRKGNEDWSEEN TSYLRKVMMFKNILTTKKTEKDRGPLNKETIFSPKSGKKLIPLNSKRSDTALYGGYSNVYSA YMTLVRANGKNLLIKIPISIANQIEVGNLKINDYIVNNPAIKKFEKILISKLPLGQLVNEDG NLIYLASNEYRHNAKQLWLSTTDADKIASISENSSDEELLEAYDILTSENVKNRFPFFKKDI DKLSQVRDEFLDSDKRIAVIQTILRGLQIDAAYQAPVKI ISKKVSDWHKLQQSGGIKLSDNS EMIYQSATGIFETRVKISDLL
SEQ ID NO: 314
IVDYCIGLDLGTGSVGWAVVDMNHRLMKRNGKHLWGSRLFSNAETAANRRASRSIRRRYNKR RERIRLLRAILQDMVLEKDPTFFIRLEHTSFLDEEDKAKYLGTDYKDNYNLFIDEDFNDYTY YHKYPTIYHLRKALCESTEKADPRLIYLALHHIVKYRGNFLYEGQKFNMDASNIEDKLSDIF TQFTSFNNIPYEDDEKKNLEILEILKKPLSKKAKVDEVMTLIAPEKDYKSAFKELVTGIAGN KMNVTKMILCEPIKQGDSEIKLKFSDSNYDDQFSEVEKDLGEYVEFVDALHNVYSWVELQTI MGATHTDNASISEAMVSRYNKHHDDLKLLKDCIKNNVPNKYFDMFRNDSEKSKGYYNYINRP SKAPVDEFYKYVKKCIEKVDTPEAKQILNDIELENFLLKQNSRTNGSVPYQMQLDEMIKIID NQAEYYPILKEKREQLLSILTFRIPYYFGPLNETSEHAWIKRLEGKENQRILPWNYQDIVDV DATAEGFIKRMRSYCTYFPDEEVLPKNSLIVSKYEVYNELNKIRVDDKLLEVDVKNDIYNEL FMKNKTVTEKKLKNWLVNNQCCSKDAEIKGFQKENQFSTSLTPWIDFTNIFGKIDQSNFDLI ENI IYDLTVFEDKKIMKRRLKKKYALPDDKVKQILKLKYKDWSRLSKKLLDGIVADNRFGSS VTVLDVLEMSRLNLMEIINDKDLGYAQMIEEATSCPEDGKFTYEEVERLAGSPALKRGIWQS LQIVEEITKVMKCRPKYIYIEFERSEEAKERTESKIKKLENVYKDLDEQTKKEYKSVLEELK GFDNTKKISSDSLFLYFTQLGKCMYSGKKLDIDSLDKYQIDHIVPQSLVKDDSFDNRVLWP SENQRKLDDLVVPFDIRDKMYRFWKLLFDHELISPKKFYSLIKTEYTERDEERFINRQLVET RQITKNVTQIIEDHYSTTKVAAIRANLSHEFRVKNHIYKNRDINDYHHAHDAYIVALIGGFM RDRYPNMHDSKAVYSEYMKMFRKNKNDQKRWKDGFVINSMNYPYEVDGKLIWNPDLINEIKK CFYYKDCYCTTKLDQKSGQLFNLTVLSNDAHADKGVTKAWPVNKNRSDVHKYGGFSGLQYT IVAIEGQKKKGKKTELVKKISGVPLHLKAASINEKINYIEEKEGLSDVRIIKDNIPVNQMIE MDGGEYLLTSPTEYVNARQLVLNEKQCALIADIYNAIYKQDYDNLDDILMIQLYIELTNKMK VLYPAYRGIAEKFESMNENYWISKEEKANI IKQMLIVMHRGPQNGNIVYDDFKISDRIGRL KTKNHNLNNIVFISQSPTGIYTKKYKL
SEQ ID NO: 315
MKSEKKYYIGLDVGTNSVGWAVTDEFYNILRAKGKDLWGVRLFEKADTAANTRIFRSGRRRN DRKGMRLQILREIFEDEIKKVDKDFYDRLDESKFWAEDKKVSGKYSLFNDKNFSDKQYFEKF PTIFHLRKYLMEEHGKVDIRYYFLAINQMMKRRGHFLIDGQISHVTDDKPLKEQLILLINDL LKIELEEELMDSIFEILADVNEKRTDKKNNLKELIKGQDFNKQEGNILNSIFESIVTGKAKI KNI ISDEDILEKIKEDNKEDFVLTGDSYEENLQYFEEVLQENITLFNTLKSTYDFLILQSIL KGKSTLSDAQVERYDEHKKDLEILKKVIKKYDEDGKLFKQVFKEDNGNGYVSYIGYYLNKNK KITAKKKISNIEFTKYVKGILEKQCDCEDEDVKYLLGKIEQENFLLKQISSINSVIPHQIHL FELDKILENLAKNYPSFNNKKEEFTKIEKIRKTFTFRIPYYVGPLNDYHKNNGGNAWIFRNK GEKIRPWNFEKIVDLHKSEEEFIKRMLNQCTYLPEETVLPKSSILYSEYMVLNELNNLRING KPLDTDVKLKLIEELFKKKTKVTLKSIRDYMVRNNFADKEDFDNSEKNLEIASNMKSYIDFN NILEDKFDVEMVEDLIEKITIHTGNKKLLKKYIEETYPDLSSSQIQKIINLKYKDWGRLSRK LLDGIKGTKKETEKTDTVINFLRNSSDNLMQIIGSQNYSFNEYIDKLRKKYIPQEISYEWE NLYVSPSVKKMIWQVIRVTEEITKVMGYDPDKIFIEMAKSEEEKKTTISRKNKLLDLYKAIK KDERDSQYEKLLTGLNKLDDSDLRSRKLYLYYTQMGRDMYTGEKIDLDKLFDSTHYDKDHII PQSMKKDDSIINNLVLVNKNANQTTKGNIYPVPSSIRNNPKIYNYWKYLMEKEFISKEKYNR LIRNTPLTNEELGGFINRQLVETRQSTKAIKELFEKFYQKSKI IPVKASLASDLRKDMNTLK SREVNDLHHAHDAFLNIVAGDVWNREFTSNPINYVKENREGDKVKYSLSKDFTRPRKSKGKV IWTPEKGRKLIVDTLNKPSVLISNESHVKKGELFNATIAGKKDYKKGKIYLPLKKDDRLQDV SKYGGYKAINGAFFFLVEHTKSKKRIRSIELFPLHLLSKFYEDKNTVLDYAINVLQLQDPKI IIDKINYRTEI IIDNFSYLISTKSNDGSITVKPNEQMYWRVDEISNLKKIENKYKKDAILTE EDRKIMESYIDKIYQQFKAGKYKNRRTTDTI IEKYEIIDLDTLDNKQLYQLLVAFISLSYKT SNNAVDFTVIGLGTECGKPRITNLPDNTYLVYKSITGIYEKRIRIK
SEQ ID NO: 316
MKLRGIEDDYSIGLDMGTSSVGWAVTDERGTLAHFKRKPTWGSRLFREAQTAAVARMPRGQR RRYVRRRWRLDLLQKLFEQQMEQADPDFFIRLRQSRLLRDDRAEEHADYRWPLFNDCKFTER DYYQRFPTIYHVRSWLMETDEQADIRLIYLALHNIVKHRGNFLREGQSLSAKSARPDEALNH LRETLRVWSSERGFECSIADNGSILAMLTHPDLSPSDRRKKIAPLFDVKSDDAAADKKLGIA LAGAVIGLKTEFKNIFGDFPCEDSSIYLSNDEAVDAVRSACPDDCAELFDRLCEVYSAYVLQ GLLSYAPGQTISANMVEKYRRYGEDLALLKKLVKIYAPDQYRMFFSGATYPGTGIYDAAQAR GYTKYNLGPKKSEYKPSESMQYDDFRKAVEKLFAKTDARADERYRMMMDRFDKQQFLRRLKT SDNGSIYHQLHLEELKAIVENQGRFYPFLKRDADKLVSLVSFRIPYYVGPLSTRNARTDQHG ENRFAWSERKPGMQDEPIFPWNWESIIDRSKSAEKFILRMTGMCTYLQQEPVLPKSSLLYEE FCVLNELNGAHWSIDGDDEHRFDAADREGIIEELFRRKRTVSYGDVAGWMERERNQIGAHVC GGQGEKGFESKLGSYIFFCKDVFKVERLEQSDYPMIERI ILWNTLFEDRKILSQRLKEEYGS RLSAEQIKTICKKRFTGWGRLSEKFLTGITVQVDEDSVSIMDVLREGCPVSGKRGRAMVMME ILRDEELGFQKKVDDFNRAFFAENAQALGVNELPGSPAVRRSLNQSIRIVDEIASIAGKAPA NIFIEVTRDEDPKKKGRRTKRRYNDLKDALEAFKKEDPELWRELCETAPNDMDERLSLYFMQ RGKCLYSGRAIDIHQLSNAGIYEVDHI IPRTYVKDDSLENKALVYREENQRKTDMLLIDPEI RRRMSGYWRMLHEAKLIGDKKFRNLLRSRIDDKALKGFIARQLVETGQMVKLVRSLLEARYP ETNIISVKASISHDLRTAAELVKCREANDFHHAHDAFLACRVGLFIQKRHPCVYENPIGLSQ WRNYVRQQADIFKRCRTIPGSSGFIVNSFMTSGFDKETGEIFKDDWDAEAEVEGIRRSLNF RQCFISRMPFEDHGVFWDATIYSPRAKKTAALPLKQGLNPSRYGSFSREQFAYFFIYKARNP RKEQTLFEFAQVPVRLSAQIRQDENALERYARELAKDQGLEFIRIERSKILKNQLIEIDGDR LCITGKEEVRNACELAFAQDEMRVIRMLVSEKPVSRECVISLFNRILLHGDQASRRLSKQLK LALLSEAFSEASDNVQRNVVLGLIAIFNGSTNMVNLSDIGGSKFAGNVRIKYKKELASPKVN VHLIDQSVTGMFERRTKIGL
SEQ ID NO: 317
MENKQYYIGLDVGTNSVGWAVTDTSYNLLRAKGKDMWGARLFEKANTAAERRTKRTSRRRSE REKARKAMLKELFADEINRVDPSFFIRLEESKFFLDDRSENNRQRYTLFNDATFTDKDYYEK YKTIFHLRSALINSDEKFDVRLVFLAILNLFSHRGHFLNASLKGDGDIQGMDVFYNDLVESC EYFEIELPRITNIDNFEKILSQKGKSRTKILEELSEELSISKKDKSKYNLIKLISGLEASW ELYNIEDIQDENKKIKIGFRESDYEESSLKVKEIIGDEYFDLVERAKSVHDMGLLSNIIGNS KYLCEARVEAYENHHKDLLKIKELLKKYDKKAYNDMFRKMTDKNYSAYVGSVNSNIAKERRS VDKRKIEDLYKYIEDTALKNIPDDNKDKIEILEKIKLGEFLKKQLTASNGVIPNQLQSRELR AILKKAENYLPFLKEKGEKNLTVSEMI IQLFEFQIPYYVGPLDKNPKKDNKANSWAKIKQGG RILPWNFEDKVDVKGSRKEFIEKMVRKCTYISDEHTLPKQSLLYEKFMVLNEINNIKIDGEK ISVEAKQKIYNDLFVKGKKVSQKDIKKELISLNIMDKDSVLSGTDTVCNAYLSSIGKFTGVF KEEINKQSIVDMIEDIIFLKTVYGDEKRFVKEEIVEKYGDEIDKDKIKRILGFKFSNWGNLS KSFLELEGADVGTGEVRSI IQSLWETNFNLMELLSSRFTYMDELEKRVKKLEKPLSEWTIED LDDMYLSSPVKRMIWQSMKIVDEIQTVIGYAPKRIFVEMTRSEGEKVRTKSRKDRLKELYNG IKEDSKQWVKELDSKDESYFRSKKMYLYYLQKGRCMYSGEVIELDKLMDDNLYDIDHIYPRS FVKDDSLDNLVLVKKEINNRKQNDPITPQIQASCQGFWKILHDQGFMSNEKYSRLTRKTQEF SDEEKLSFINRQIVETGQATKCMAQILQKSMGEDVDWFSKARLVSEFRHKFELFKSRLIND FHHANDAYLNIWGNSYFVKFTRNPANFIKDARKNPDNPVYKYHMDRFFERDVKSKSEVAWI GQSEGNSGTIVIVKKTMAKNSPLITKKVEEGHGSITKETIVGVKEIKFGRNKVEKADKTPKK PNLQAYRPIKTSDERLCNILRYGGRTSISISGYCLVEYVKKRKTIRSLEAIPVYLGRKDSLS EEKLLNYFRYNLNDGGKDSVSDIRLCLPFISTNSLVKIDGYLYYLGGKNDDRIQLYNAYQLK MKKEEVEYIRKIEKAVSMSKFDEIDREKNPVLTEEKNIELYNKIQDKFENTVFSKRMSLVKY NKKDLSFGDFLKNKKSKFEEIDLEKQCKVLYNIIFNLSNLKEVDLSDIGGSKSTGKCRCKKN ITNYKEFKLIQQSITGLYSCEKDLMTI SEQ ID NO: 318
MKNLKEYYIGLDIGTASVGWAVTDESYNIPKFNGKKMWGVRLFDDAKTAEERRTQRGSRRRL NRRKERINLLQDLFATEISKVDPNFFLRLDNSDLYREDKDEKLKSKYTLFNDKDFKDRDYHK KYPTIHHLIMDLIEDEGKKDIRLLYLACHYLLKNRGHFIFEGQKFDTKNSFDKSINDLKIHL RDEYNIDLEFNNEDLIEIITDTTLNKTNKKKELKNIVGDTKFLKAISAIMIGSSQKLVDLFE DGEFEETTVKSVDFSTTAFDDKYSEYEEALGDTISLLNILKSIYDSSILENLLKDADKSKDG NKYISKAFVKKFNKHGKDLKTLKRIIKKYLPSEYANIFRNKSINDNYVAYTKSNITSNKRTK ASKFTKQEDFYKFIKKHLDTIKETKLNSSENEDLKLIDEMLTDIEFKTFIPKLKSSDNGVIP YQLKLMELKKILDNQSKYYDFLNESDEYGTVKDKVESIMEFRIPYYVGPLNPDSKYAWIKRE NTKITPWNFKDIVDLDSSREEFIDRLIGRCTYLKEEKVLPKASLIYNEFMVLNELNNLKLNE FLITEEMKKAIFEELFKTKKKVTLKAVSNLLKKEFNLTGDILLSGTDGDFKQGLNSYIDFKN IIGDKVDRDDYRIKIEEIIKLIVLYEDDKTYLKKKIKSAYKNDFTDDEIKKIAALNYKDWGR LSKRFLTGIEGVDKTTGEKGSIIYFMREYNLNLMELMSGHYTFTEEVEKLNPVENRELCYEM VDELYLSPSVKRMLWQSLRWDEIKRI IGKDPKKIFIEMARAKEAKNSRKESRKNKLLEFYK FGKKAFINEIGEERYNYLLNEINSEEESKFRWDNLYLYYTQLGRCMYSLEPIDLADLKSNNI YDQDHIYPKSKIYDDSLENRVLVKKNLNHEKGNQYPIPEKVLNKNAYGFWKILFDKGLIGQK KYTRLTRRTPFEERELAEFIERQIVETRQATKETANLLKNICQDSEIVYSKAENASRFRQEF DIIKCRTVNDLHHMHDAYLNIWGNVYNTKFTKNPLNFIKDKDNVRSYNLENMFKYDWRGS YTAWIADDSEGNVKAATIKKVKRELEGKNYRFTRMSYIGTGGLYDQNLMRKGKGQIPQKENT NKSNIEKYGGYNKASSAYFALIESDGKAGRERTLETIPIMVYNQEKYGNTEAVDKYLKDNLE LQDPKILKDKIKINSLIKLDGFLYNIKGKTGDSLSIAGSVQLIVNKEEQKLIKKMDKFLVKK KDNKDIKVTSFDNIKEEELIKLYKTLSDKLNNGIYSNKRNNQAKNISEALDKFKEISIEEKI DVLNQIILLFQSYNNGCNLKSIGLSAKTGWFIPKKLNYKECKLINQSITGLFENEVDLLNL
SEQ ID NO: 319
MGKMYYLGLDIGTNSVGYAVTDPSYHLLKFKGEPMWGAHVFAAGNQSAERRSFRTSRRRLDR RQQRVKLVQEIFAPVISPIDPRFFIRLHESALWRDDVAETDKHIFFNDPTYTDKEYYSDYPT IHHLIVDLMESSEKHDPRLVYLAVAWLVAHRGHFLNEVDKDNIGDVLSFDAFYPEFLAFLSD NGVSPWVCESKALQATLLSRNSVNDKYKALKSLIFGSQKPEDNFDANISEDGLIQLLAGKKV KVNKLFPQESNDASFTLNDKEDAIEEILGTLTPDECEWIAHIRRLFDWAIMKHALKDGRTIS ESKVKLYEQHHHDLTQLKYFVKTYLAKEYDDIFRNVDSETTKNYVAYSYHVKEVKGTLPKNK ATQEEFCKYVLGKVKNIECSEADKVDFDEMIQRLTDNSFMPKQVSGENRVIPYQLYYYELKT ILNKAASYLPFLTQCGKDAISNQDKLLSIMTFRIPYFVGPLRKDNSEHAWLERKAGKIYPWN FNDKVDLDKSEEAFIRRMTNTCTYYPGEDVLPLDSLIYEKFMILNEINNIRIDGYPISVDVK QQVFGLFEKKRRVTVKDIQNLLLSLGALDKHGKLTGIDTTIHSNYNTYHHFKSLMERGVLTR DDVERIVERMTYSDDTKRVRLWLNNNYGTLTADDVKHISRLRKHDFGRLSKMFLTGLKGVHK ETGERASILDFMWNTNDNLMQLLSECYTFSDEITKLQEAYYAKAQLSLNDFLDSMYISNAVK RPIYRTLAWNDIRKACGTAPKRIFIEMARDGESKKKRSVTRREQIKNLYRSIRKDFQQEVD FLEKILENKSDGQLQSDALYLYFAQLGRDMYTGDPIKLEHIKDQSFYNIDHIYPQSMVKDDS LDNKVLVQSEINGEKSSRYPLDAAIRNKMKPLWDAYYNHGLISLKKYQRLTRSTPFTDDEKW DFINRQLVETRQSTKALAILLKRKFPDTEIVYSKAGLSSDFRHEFGLVKSRNINDLHHAKDA FLAIVTGNVYHERFNRRWFMVNQPYSVKTKTLFTHSIKNGNFVAWNGEEDLGRIVKMLKQNK NTIHFTRFSFDRKEGLFDIQPLKASTGLVPRKAGLDWKYGGYDKSTAAYYLLVRFTLEDKK TQHKLMMIPVEGLYKARIDHDKEFLTDYAQTTISEILQKDKQKVINIMFPMGTRHIKLNSMI SIDGFYLSIGGKSSKGKSVLCHAMVPLIVPHKIECYIKAMESFARKFKENNKLRIVEKFDKI TVEDNLNLYELFLQKLQHNPYNKFFSTQFDVLTNGRSTFTKLSPEEQVQTLLNILSIFKTCR SSGCDLKSINGSAQAARIMISADLTGLSKKYSDIRLVEQSASGLFVSKSQNLLEYL
SEQ ID NO: 320
MTKKEQPYNIGLDIGTSSVGWAVTNDNYDLLNIKKKNLWGVRLFEEAQTAKETRLNRSTRRR YRRRKNRINWLNEIFSEELAKTDPSFLIRLQNSWVSKKDPDRKRDKYNLFIDGPYTDKEYYR EFPTIFHLRKELILNKDKADIRLIYLALHNILKYRGNFTYEHQKFNISNLNNNLSKELIELN QQLIKYDISFPDDCDWNHISDILIGRGNATQKSSNILKDFTLDKETKKLLKEVINLILGNVA HLNTIFKTSLTKDEEKLNFSGKDIESKLDDLDSILDDDQFTVLDAANRIYSTITLNEILNGE SYFSMAKVNQYENHAIDLCKLRDMWHTTKNEEAVEQSRQAYDDYINKPKYGTKELYTSLKKF LKVALPTNLAKEAEEKISKGTYLVKPRNSENGWPYQLNKIEMEKIIDNQSQYYPFLKENKE KLLSILSFRIPYYVGPLQSAEKNPFAWMERKSNGHARPWNFDEIVDREKSSNKFIRRMTVTD SYLVGEPVLPKNSLIYQRYEVLNELNNIRITENLKTNPIGSRLTVETKQRIYNELFKKYKKV TVKKLTKWLIAQGYYKNPILIGLSQKDEFNSTLTTYLDMKKIFGSSFMEDNKNYDQIEELIE WLTIFEDKQILNEKLHSSKYSYTPDQIKKISNMRYKGWGRLSKKILMDITTETNTPQLLQLS NYSILDLMWATNNNFISIMSNDKYDFKNYIENHNLNKNEDQNISDLVNDIHVSPALKRGITQ SIKIVQEIVKFMGHAPKHIFIEVTRETKKSEITTSREKRIKRLQSKLLNKANDFKPQLREYL VPNKKIQEELKKHKNDLSSERIMLYFLQNGKSLYSEESLNINKLSDYQVDHILPRTYIPDDS LENKALVLAKENQRKADDLLLNSNVIDRNLERWTYMLNNNMIGLKKFKNLTRRVITDKDKLG FIHRQLVQTSQMVKGVANILDNMYKNQGTTCIQARANLSTAFRKALSGQDDTYHFKHPELVK NRNVNDFHHAQDAYLASFLGTYRLRRFPTNEMLLMNGEYNKFYGQVKELYSKKKKLPDSRKN GFI ISPLVNGTTQYDRNTGEIIWNVGFRDKILKIFNYHQCNVTRKTEIKTGQFYDQTIYSPK NPKYKKLIAQKKDMDPNIYGGFSGDNKSSITIVKIDNNKIKPVAIPIRLINDLKDKKTLQNW LEENVKHKKSIQIIKNNVPIGQI IYSKKVGLLSLNSDREVANRQQLILPPEHSALLRLLQIP DEDLDQILAFYDKNILVEILQELITKMKKFYPFYKGEREFLIANIENFNQATTSEKVNSLEE LITLLHANSTSAHLIFNNIEKKAFGRKTHGLTLNNTDFIYQSVTGLYETRIHIE
SEQ ID NO: 321
MTKFNKNYSIGLDIGVSSVGYAVVTEDYRVPAFKFKVLGNTEKEKIKKNLIGSTTFVSAQPA KGTRVFRVNRRRIDRRNHRITYLRDIFQKEIEKVDKNFYRRLDESFRVLGDKSEDLQIKQPF FGDKELETAYHKKYPTIYHLRKHLADADKNSPVADIREVYMAISHILKYRGHFLTLDKINPN NINMQNSWIDFIESCQEVFDLEISDESKNIADIFKSSENRQEKVKKILPYFQQELLKKDKSI FKQLLQLLFGLKTKFKDCFELEEEPDLNFSKENYDENLENFLGSLEEDFSDVFAKLKVLRDT ILLSGMLTYTGATHARFSATMVERYEEHRKDLQRFKFFIKQNLSEQDYLDIFGRKTQNGFDV DKETKGYVGYITNKMVLTNPQKQKTIQQNFYDYISGKITGIEGAEYFLNKISDGTFLRKLRT SDNGAIPNQIHAYELEKIIERQGKDYPFLLENKDKLLSILTFKIPYYVGPLAKGSNSRFAWI KRATSSDILDDNDEDTRNGKIRPWNYQKLINMDETRDAFITNLIGNDIILLNEKVLPKRSLI YEEVMLQNELTRVKYKDKYGKAHFFDSELRQNIINGLFKNNSKRVNAKSLIKYLSDNHKDLN AIEIVSGVEKGKSFNSTLKTYNDLKTIFSEELLDSEIYQKELEEIIKVITVFDDKKSIKNYL TKFFGHLEILDEEKINQLSKLRYSGWGRYSAKLLLDIRDEDTGFNLLQFLRNDEENRNLTKL ISDNTLSFEPKIKDIQSKSTIEDDIFDEIKKLAGSPAIKRGILNSIKIVDELVQI IGYPPHN IVIEMARENMTTEEGQKKAKTRKTKLESALKNIENSLLENGKVPHSDEQLQSEKLYLYYLQN GKDMYTLDKTGSPAPLYLDQLDQYEVDHIIPYSFLPIDSIDNKVLTHRENNQQKLNNIPDKE TVANMKPFWEKLYNAKLISQTKYQRLTTSERTPDGVLTESMKAGFIERQLVETRQIIKHVAR ILDNRFSDTKI ITLKSQLITNFRNTFHIAKIRELNDYHHAHDAYLAVWGQTLLKVYPKLAP ELIYGHHAHFNRHEENKATLRKHLYSNIMRFFNNPDSKVSKDIWDCNRDLPIIKDVIYNSQI NFVKRTMIKKGAFYNQNPVGKFNKQLAANNRYPLKTKALCLDTSIYGGYGPMNSALSII IIA ERFNEKKGKIETVKEFHDIFIIDYEKFNNNPFQFLNDTSENGFLKKNNINRVLGFYRIPKYS LMQKIDGTRMLFESKSNLHKATQFKLTKTQNELFFHMKRLLTKSNLMDLKSKSAIKESQNFI LKHKEEFDNISNQLSAFSQKMLGNTTSLKNLIKGYNERKIKEIDIRDETIKYFYDNFIKMFS FVKSGAPKDINDFFDNKCTVARMRPKPDKKLLNATLIHQSITGLYETRIDLSKLGED SEQ ID NO: 322
MKQEYFLGLDMGTGSLGWAVTDSTYQVMRKHGKALWGTRLFESASTAEERRMFRTARRRLDR RNWRIQVLQEIFSEEISKVDPGFFLRMKESKYYPEDKRDAEGNCPELPYALFVDDNYTDKNY HKDYPTIYHLRKMLMETTEIPDIRLVYLVLHHMMKHRGHFLLSGDISQIKEFKSTFEQLIQN IQDEELEWHISLDDAAIQFVEHVLKDRNLTRSTKKSRLIKQLNAKSACEKAILNLLSGGTVK LSDIFNNKELDESERPKVSFADSGYDDYIGIVEAELAEQYYIIASAKAVYDWSVLVEILGNS VSISEAKIKVYQKHQADLKTLKKIVRQYMTKEDYKRVFVDTEEKLNNYSAYIGMTKKNGKKV DLKSKQCTQADFYDFLKKNVIKVIDHKEITQEIESEIEKENFLPKQVTKDNGVIPYQVHDYE LKKILDNLGTRMPFIKENAEKIQQLFEFRIPYYVGPLNRVDDGKDGKFTWSVRKSDARIYPW NFTEVIDVEASAEKFIRRMTNKCTYLVGEDVLPKDSLVYSKFMVLNELNNLRLNGEKISVEL KQRIYEELFCKYRKVTRKKLERYLVIEGIAKKGVEITGIDGDFKASLTAYHDFKERLTDVQL SQRAKEAIVLNWLFGDDKKLLKQRLSKMYPNLTTGQLKGICSLSYQGWGRLSKTFLEEITV PAPGTGEVWNIMTALWQTNDNLMQLLSRNYGFTNEVEEFNTLKKETDLSYKTVDELYVSPAV KRQIWQTLKWKEIQKVMGNAPKRVFVEMAREKQEGKRSDSRKKQLVELYRACKNEERDWIT ELNAQSDQQLRSDKLFLYYIQKGRCMYSGETIQLDELWDNTKYDIDHIYPQSKTMDDSLNNR VLVKKNYNAIKSDTYPLSLDIQKKMMSFWKMLQQQGFITKEKYVRLVRSDELSADELAGFIE RQIVETRQSTKAVATILKEALPDTEIVYVKAGNVSNFRQTYELLKVREMNDLHHAKDAYLNI WGNAYFVKFTKNAAWFIRNNPGRSYNLKRMFEFDIERSGEIAWKAGNKGSIVTVKKVMQKN NILVTRKAYEVKGGLFDQQIMKKGKGQVPIKGNDERLADIEKYGGYNKAAGTYFMLVKSLDK KGKEIRTIEFVPLYLKNQIEINHESAIQYLAQERGLNSPEILLSKIKIDTLFKVDGFKMWLS GRTGNQLIFKGANQLILSHQEAAILKGWKYVNRKNENKDAKLSERDGMTEEKLLQLYDTFL DKLSNTVYSIRLSAQIKTLTEKRAKFIGLSNEDQCIVLNEILHMFQCQSGSANLKLIGGPGS AGILVMNNNITACKQISVINQSPTGIYEKEIDLIKL
SEQ ID NO: 323
MKKPYSIGLDIGTNSVGWAWTDDYKVPAKKMKVLGNTDKSHIEKNLLGALLFDSGNTAEDR RLKRTARRRYTRRRNRILYLQEIFSEEMGKVDDSFFHRLEDSFLVTEDKRGERHPIFGNLEE EVKYHENFPTIYHLRQYLADNPEKVDLRLVYLALAHIIKFRGHFLIEGKFDTRNNDVQRLFQ EFLAVYDNTFENSSLQEQNVQVEEILTDKISKSAKKDRVLKLFPNEKSNGRFAEFLKLIVGN QADFKKHFELEEKAPLQFSKDTYEEELEVLLAQIGDNYAELFLSAKKLYDSILLSGILTVTD VGTKAPLSASMIQRYNEHQMDLAQLKQFIRQKLSDKYNEVFSDVSKDGYAGYIDGKTNQEAF YKYLKGLLNKIEGSGYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMRAIIRRQAEFYPFLA DNQDRIEKLLTFRIPYYVGPLARGKSDFAWLSRKSADKITPWNFDEIVDKESSAEAFINRMT NYDLYLPNQKVLPKHSLLYEKFTVYNELTKVKYKTEQGKTAFFDANMKQEIFDGVFKVYRKV TKDKLMDFLEKEFDEFRIVDLTGLDKENKVFNASYGTYHDLCKILDKDFLDNSKNEKILEDI VLTLTLFEDREMIRKRLENYSDLLTKEQVKKLERRHYTGWGRLSAELIHGIRNKESRKTILD YLIDDGNSNRNFMQLINDDALSFKEEIAKAQVIGETDNLNQWSDIAGSPAIKKGILQSLKI VDELVKIMGHQPENIWEMARENQFTNQGRRNSQQRLKGLTDSIKEFGSQILKEHPVENSQL QNDRLFLYYLQNGRDMYTGEELDIDYLSQYDIDHI IPQAFIKDNSIDNRVLTSSKENRGKSD DVPSKDVVRKMKSYWSKLLSAKLITQRKFDNLTKAERGGLTDDDKAGFIKRQLVETRQITKH VARILDERFNTETDENNKKIRQVKIVTLKSNLVSNFRKEFELYKVREINDYHHAHDAYLNAV IGKALLGVYPQLEPEFVYGDYPHFHGHKENKATAKKFFYSNIMNFFKKDDVRTDKNGEI IWK KDEHISNIKKVLSYPQVNIVKKVEEQTGGFSKESILPKGNSDKLIPRKTKKFYWDTKKYGGF DSPIVAYSILVIADIEKGKSKKLKTVKALVGVTIMEKMTFERDPVAFLERKGYRNVQEE il KLPKYSLFKLENGRKRLLASARELQKGNEIVLPNHLGTLLYHAKNIHKVDEPKHLDYVDKHK DEFKELLDWSNFSKKYTLAEGNLEKIKELYAQNNGEDLKELASSFINLLTFTAIGAPATFK FFDKNIDRKRYTSTTEILNATLIHQSITGLYETRIDLNKLGGD
SEQ ID NO: 324
MDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEAT RLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVD EVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFI QLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGL TPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNT EITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEF YKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLK DNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMT NFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRK VTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIV LTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDF LKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKW DELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQL QNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSD NVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKH VAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAV VGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLAN GEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNS DKLIARKKDWDPKKYGGFDSPTVAYSVLWAKVEKGKSKKLKSVKELLGITIMERSSFEKNP IDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLAS HYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPI REQAENI IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQ LGGD
SEQ ID NO: 325
MTKPYSIGLDIGTNSVGWAVTTDNYKVPSKKMKVLGNTSKKYIKKNLLGVLLFDSGITAEGR RLKRTARRRYTRRRNRILYLQEIFSTEMATLDDAFFQRLDDSFLVPDDKRDSKYPIFGNLVE EKAYHDEFPTIYHLRKYLADSTKKADLRLVYLALAHMIKYRGHFLIEGEFNSKNNDIQKNFQ DFLDTYNAIFESDLSLENSKQLEEIVKDKISKLEKKDRILKLFPGEKNSGIFSEFLKLIVGN QADFRKCFNLDEKASLHFSKESYDEDLETLLGYIGDDYSDVFLKAKKLYDAILLSGFLTVTD NETEAPLSSAMIKRYNEHKEDLALLKEYIRNISLKTYNEVFKDDTKNGYAGYIDGKTNQEDF YVYLKKLLAEFEGADYFLEKIDREDFLRKQRTFDNGSIPYQIHLQEMRAILDKQAKFYPFLA KNKERIEKILTFRIPYYVGPLARGNSDFAWSIRKRNEKITPWNFEDVIDKESSAEAFINRMT SFDLYLPEEKVLPKHSLLYETFNVYNELTKVRFIAESMRDYQFLDSKQKKDIVRLYFKDKRK VTDKDIIEYLHAIYGYDGIELKGIEKQFNSSLSTYHDLLNIINDKEFLDDSSNEAIIEEIIH TLTIFEDREMIKQRLSKFENIFDKSVLKKLSRRHYTGWGKLSAKLINGIRDEKSGNTILDYL IDDGISNRNFMQLIHDDALSFKKKIQKAQIIGDEDKGNIKEWKSLPGSPAIKKGILQSIKI VDELVKVMGGRKPESIWEMARENQYTNQGKSNSQQRLKRLEKSLKELGSKILKENIPAKLS KIDNNALQNDRLYLYYLQNGKDMYTGDDLDIDRLSNYDIDHIIPQAFLKDNSIDNKVLVSSA SNRGKSDDVPSLEWKKRKTFWYQLLKSKLISQRKFDNLTKAERGGLSPEDKAGFIQRQLVE TRQITKHVARLLDEKFNNKKDENNRAVRTVKIITLKSTLVSQFRKDFELYKVREINDFHHAH DAYLNAVVASALLKKYPKLEPEFVYGDYPKYNSFRERKSATEKVYFYSNIMNIFKKSISLAD GRVIERPLIEVNEETGESVWNKESDLATVRRVLSYPQVNWKKVEEQNHGLDRGKPKGLFNA NLSSKPKPNSNENLVGAKEYLDPKKYGGYAGISNSFTVLVKGTIEKGAKKKITNVLEFQGIS ILDRINYRKDKLNFLLEKGYKDIELIIELPKYSLFELSDGSRRMLASILSTNNKRGEIHKGN QIFLSQKFVKLLYHAKRISNTINENHRKYVENHKKEFEELFYYILEFNENYVGAKKNGKLLN SAFQSWQNHSIDELCSSFIGPTGSERKGLFELTSRGSAADFEFLGVKIPRYRDYTPSSLLKD ATLIHQSVTGLYETRIDLAKLGEG
SEQ ID NO: 326
MKKQKFSDYYLGFDIGTNSVGWCVTDLDYNVLRFNKKDMWGSRLFDEAKTAAERRVQRNSRR RLKRRKWRLNLLEEIFSDEIMKIDSNFFRRLKESSLWLEDKNSKEKFTLFNDDNYKDYDFYK QYPTIFHLRDELIKNPEKKDIRLIYLALHSIFKSRGHFLFEGQNLKEIKNFETLYNNLISFL EDNGINKSIDKDNIEKLEKIICDSGKGLKDKEKEFKGIFNSDKQLVAIFKLSVGSSVSLNDL FDTDEYKKEEVEKEKISFREQIYEDDKPIYYSILGEKIELLDIAKSFYDFMVLNNILSDSNY ISEAKVKLYEEHKKDLKNLKYIIRKYNKENYDKLFKDKNENNYPAYIGLNKEKDKKEWEKS RLKIDDLIKVIKGYLPKPERIEEKDKTIFNEILNKIELKTILPKQRISDNGTLPYQIHEVEL EKILENQSKYYDFLNYEENGVSTKDKLLKTFKFRIPYYVGPLNSYHKDKGGNSWIVRKEEGK ILPWNFEQKVDIEKSAEEFIKRMTNKCTYLNGEDVIPKDSFLYSEYI ILNELNKVQVNDEFL NEENKRKIIDELFKENKKVSEKKFKEYLLVNQIANRTVELKGIKDSFNSNYVSYIKFKDIFG EKLNLDIYKEISEKSILWKCLYGDDKKIFEKKIKNEYGDILNKDEIKKINSFKFNTWGRLSE KLLTGIEFINLETGECYSSVMEALRRTNYNLMELLSSKFTLQESIDNENKEMNEVSYRDLIE ESYVSPSLKRAILQTLKIYEEIKKITGRVPKKVFIEMARGGDESMKNKKIPARQEQLKKLYD SCGNDIANFSIDIKEMKNSLSSYDNNSLRQKKLYLYYLQFGKCMYTGREIDLDRLLQNNDTY DIDHIYPRSKVIKDDSFDNLVLVLKNENAEKSNEYPVKKEIQEKMKSFWRFLKEKNFISDEK YKRLTGKDDFELRGFMARQLVNVRQTTKEVGKILQQIEPEIKIVYSKAEIASSFREMFDFIK VRELNDTHHAKDAYLNIVAGNVYNTKFTEKPYRYLQEIKENYDVKKIYNYDIKNAWDKENSL EIVKKNMEKNTVNITRFIKEEKGELFNLNPIKKGETSNEIISIKPKLYDGKDNKLNEKYGYY TSLKAAYFIYVEHEKKNKKVKTFERITRIDSTLIKNEKNLIKYLVSQKKLLNPKI IKKIYKE QTLIIDSYPYTFTGVDSNKKVELKNKKQLYLEKKYEQILKNALKFVEDNQGETEENYKFIYL KKRNNNEKNETIDAVKERYNIEFNEMYDKFLEKLSSKDYKNYINNKLYTNFLNSKEKFKKLK LWEKSLILREFLKIFNKNTYGKYEIKDSQTKEKLFSFPEDTGRIRLGQSSLGNNKELLEESV TGLFVKKIKL
SEQ ID NO: 327
MKNYTIGLDIGVASVGWVCIDENYKILNYNNRHAFGVHEFESAESAAGRRLKRGMRRRYNRR KKRLQLLQSLFDSYITDSGFFSKTDSQHFWKNNNEFENRSLTEVLSSLRISSRKYPTIYHLR SDLIESNKKMDLRLVYLALHNLVKYRGHFLQEGNWSEAASAEGMDDQLLELVTRYAELENLS PLDLSESQWKAAETLLLNRNLTKTDQSKELTAMFGKEYEPFCKLVAGLGVSLHQLFPSSEQA LAYKETKTKVQLSNENVEEVMELLLEEESALLEAVQPFYQQWLYELLKGETYVAKAKVSAF KQYQKDMASLKNLLDKTFGEKVYRSYFISDKNSQREYQKSHKVEVLCKLDQFNKEAKFAETF YKDLKKLLEDKSKTSIGTTEKDEMLRI IKAIDSNQFLQKQKGIQNAAIPHQNSLYEAEKILR NQQAHYPFITTEWIEKVKQILAFRIPYYIGPLVKDTTQSPFSWVERKGDAPITPWNFDEQID KAASAEAFISRMRKTCTYLKGQEVLPKSSLTYERFEVLNELNGIQLRTTGAESDFRHRLSYE MKCWIIDNVFKQYKTVSTKRLLQELKKSPYADELYDEHTGEIKEVFGTQKENAFATSLSGYI SMKSILGAWDDNPAMTEELIYWIAVFEDREILHLKIQEKYPSITDVQRQKLALVKLPGWGR FSRLLIDGLPLDEQGQSVLDHMEQYSSVFMEVLKNKGFGLEKKIQKMNQHQVDGTKKIRYED IEELAGSPALKRGIWRSVKIVEELVSIFGEPANIVLEVAREDGEKKRTKSRKDQWEELTKTT LKNDPDLKSFIGEIKSQGDQRFNEQRFWLYVTQQGKCLYTGKALDIQNLSMYEVDHILPQNF VKDDSLDNLALVMPEANQRKNQVGQNKMPLEIIEANQQYAMRTLWERLHELKLISSGKLGRL KKPSFDEVDKDKFIARQLVETRQIIKHVRDLLDERFSKSDIHLVKAGIVSKFRRFSEIPKIR DYNNKHHAMDALFAAALIQSILGKYGKNFLAFDLSKKDRQKQWRSVKGSNKEFFLFKNFGNL RLQSPVTGEEVSGVEYMKHVYFELPWQTTKMTQTGDGMFYKESIFSPKVKQAKYVSPKTEKF VHDEVKNHSICLVEFTFMKKEKEVQETKFIDLKVIEHHQFLKEPESQLAKFLAEKETNSPII HARIIRTIPKYQKIWIEHFPYYFISTRELHNARQFEISYELMEKVKQLSERSSVEELKIVFG LLIDQMNDNYPIYTKSSIQDRVQKFVDTQLYDFKSFEIGFEELKKAVAANAQRSDTFGSRIS KKPKPEEVAIGYESITGLKYRKPRSWGTKR
SEQ ID NO: 328
MKKEIKDYFLGLDVGTGSVGWAVTDTDYKLLKANRKDLWGMRCFETAETAEVRRLHRGARRR IERRKKRIKLLQELFSQEIAKTDEGFFQRMKESPFYAEDKTILQENTLFNDKDFADKTYHKA YPTINHLIKAWIENKVKPDPRLLYLACHNIIKKRGHFLFEGDFDSENQFDTSIQALFEYLRE DMEVDIDADSQKVKEILKDSSLKNSEKQSRLNKILGLKPSDKQKKAITNLISGNKINFADLY DNPDLKDAEKNSISFSKDDFDALSDDLASILGDSFELLLKAKAVYNCSVLSKVIGDEQYLSF AKVKIYEKHKTDLTKLKNVIKKHFPKDYKKVFGYNKNEKNNNNYSGYVGVCKTKSKKLI INN SVNQEDFYKFLKTILSAKSEIKEVNDILTEIETGTFLPKQISKSNAEIPYQLRKMELEKILS NAEKHFSFLKQKDEKGLSHSEKI IMLLTFKIPYYIGPINDNHKKFFPDRCWWKKEKSPSGK TTPWNFFDHIDKEKTAEAFITSRTNFCTYLVGESVLPKSSLLYSEYTVLNEINNLQIIIDGK NICDIKLKQKIYEDLFKKYKKITQKQISTFIKHEGICNKTDEVIILGIDKECTSSLKSYIEL KNIFGKQVDEISTKNMLEEIIRWATIYDEGEGKTILKTKIKAEYGKYCSDEQIKKILNLKFS GWGRLSRKFLETVTSEMPGFSEPVNIITAMRETQNNLMELLSSEFTFTENIKKINSGFEDAE KQFSYDGLVKPLFLSPSVKKMLWQTLKLVKEISHITQAPPKKIFIEMAKGAELEPARTKTRL KILQDLYNNCKNDADAFSSEIKDLSGKIENEDNLRLRSDKLYLYYTQLGKCMYCGKPIEIGH VFDTSNYDIDHIYPQSKIKDDSISNRVLVCSSCNKNKEDKYPLKSEIQSKQRGFWNFLQRNN FISLEKLNRLTRATPISDDETAKFIARQLVETRQATKVAAKVLEKMFPETKIVYSKAETVSM FRNKFDIVKCREINDFHHAHDAYLNIVVGNVYNTKFTNNPWNFIKEKRDNPKIADTYNYYKV FDYDVKRNNITAWEKGKTI ITVKDMLKRNTPIYTRQAACKKGELFNQTIMKKGLGQHPLKKE GPFSNISKYGGYNKVSAAYYTLIEYEEKGNKIRSLETIPLYLVKDIQKDQDVLKSYLTDLLG KKEFKILVPKIKINSLLKINGFPCHITGKTNDSFLLRPAVQFCCSNNEVLYFKKI IRFSEIR SQREKIGKTISPYEDLSFRSYIKENLWKKTKNDEIGEKEFYDLLQKKNLEIYDMLLTKHKDT IYKKRPNSATIDILVKGKEKFKSLIIENQFEVILEILKLFSATRNVSDLQHIGGSKYSGVAK IGNKISSLDNCILIYQSITGIFEKRIDLLKV
SEQ ID NO: 329
MEGQMKNNGNNLQQGNYYLGLDVGTSSVGWAVTDTDYNVLKFRGKSMWGARLFDEASTAEER RTHRGNRRRLARRKYRLLLLEQLFEKEIRKIDDNFFVRLHESNLWADDKSKPSKFLLFNDTN FTDKDYLKKYPTIYHLRSDLIHNSTEHDIRLVFLALHHLIKYRGHFIYDNSANGDVKTLDEA VSDFEEYLNENDIEFNIENKKEFINVLSDKHLTKKEKKISLKKLYGDITDSENINISVLIEM LSGSSISLSNLFKDIEFDGKQNLSLDSDIEETLNDWDILGDNIDLLIHAKEVYDIAVLTSS LGKHKYLCDAKVELFEKNKKDLMILKKYIKKNHPEDYKKIFSSPTEKKNYAAYSQTNSKNVC SQEEFCLFIKPYIRDMVKSENEDEVRIAKEVEDKSFLTKLKGTNNSVVPYQIHERELNQILK NIVAYLPFMNDEQEDISWDKIKLIFKFKIPYYVGPLNTKSTRSWVYRSDEKIYPWNFSNVI DLDKTAHEFMNRLIGRCTYTNDPVLPMDSLLYSKYNVLNEINPIKVNGKAIPVEVKQAIYTD LFENSKKKVTRKSIYIYLLKNGYIEKEDIVSGIDIEIKSKLKSHHDFTQIVQENKCTPEEIE RIIKGILVYSDDKSMLRRWLKNNIKGLSENDVKYLAKLNYKEWGRLSKTLLTDIYTINPEDG EACSILDIMWNTNATLMEILSNEKYQFKQNIENYKAENYDEKQNLHEELDDMYISPAARRSI WQALRIVDEIVDIKKSAPKKIFIEMAREKKSAMKKKRTESRKDTLLELYKSCKSQADGFYDE ELFEKLSNESNSRLRRDQLYLYYTQMGRSMYTGKRIDFDKLINDKNTYDIDHIYPRSKIKDD SITNRVLVEKDINGEKTDIYPISEDIRQKMQPFWKILKEKGLINEEKYKRLTRNYELTDEEL SSFVARQLVETQQSTKALATLLKKEYPSAKIVYSKAGNVSEFRNRKDKELPKFREINDLHHA KDAYLNIWGNVYDTKFTEKFFNNIRNENYSLKRVFDFSVPGAWDAKGSTFNTIKKYMAKNN PIIAFAPYEVKGELFDQQIVPKGKGQFPIKQGKDIEKYGGYNKLSSAFLFAVEYKGKKARER SLETVYIKDVELYLQDPIKYCESVLGLKEPQIIKPKILMGSLFSINNKKLVVTGRSGKQYVC HHIYQLSINDEDSQYLKNIAKYLQEEPDGNIERQNILNITSVNNIKLFDVLCTKFNSNTYEI ILNSLKNDVNEGREKFSELDILEQCNILLQLLKAFKCNRESSNLEKLNNKKQAGVIVIPHLF TKCSVFKVIHQSITGLFEKEMDLLK SEQ ID NO: 330
MGRKPYILSLDIGTGSVGYACMDKGFNVLKYHDKDALGVYLFDGALTAQERRQFRTSRRRKN RRIKRLGLLQELLAPLVQNPNFYQFQRQFAWKNDNMDFKNKSLSEVLSFLGYESKKYPTIYH LQEALLLKDEKFDPELIYMALYHLVKYRGHFLFDHLKIENLTNNDNMHDFVELIETYENLNN IKLNLDYEKTKVIYEILKDNEMTKNDRAKRVKNMEKKLEQFSIMLLGLKFNEGKLFNHADNA EELKGANQSHTFADNYEENLTPFLTVEQSEFIERANKIYLSLTLQDILKGKKSMAMSKVAAY DKFRNELKQVKDIVYKADSTRTQFKKIFVSSKKSLKQYDATPNDQTFSSLCLFDQYLIRPKK QYSLLIKELKKIIPQDSELYFEAENDTLLKVLNTTDNASIPMQINLYEAETILRNQQKYHAE ITDEMIEKVLSLIQFRIPYYVGPLVNDHTASKFGWMERKSNESIKPWNFDEWDRSKSATQF IRRMTNKCSYLINEDVLPKNSLLYQEMEVLNELNATQIRLQTDPKNRKYRMMPQIKLFAVEH IFKKYKTVSHSKFLEIMLNSNHRENFMNHGEKLSIFGTQDDKKFASKLSSYQDMTKIFGDIE GKRAQIEEIIQWITIFEDKKILVQKLKECYPELTSKQINQLKKLNYSGWGRLSEKLLTHAYQ GHSIIELLRHSDENFMEILTNDVYGFQNFIKEENQVQSNKIQHQDIANLTTSPALKKGIWST IKLVRELTSIFGEPEKIIMEFATEDQQKGKKQKSRKQLWDDNIKKNKLKSVDEYKYIIDVAN KLNNEQLQQEKLWLYLSQNGKCMYSGQSIDLDALLSPNATKHYEVDHIFPRSFIKDDSIDNK VLVIKKMNQTKGDQVPLQFIQQPYERIAYWKSLNKAGLISDSKLHKLMKPEFTAMDKEGFIQ RQLVETRQISVHVRDFLKEEYPNTKVIPMKAKMVSEFRKKFDIPKIRQMNDAHHAIDAYLNG WYHGAQLAYPNVDLFDFNFKWEKVREKWKALGEFNTKQKSRELFFFKKLEKMEVSQGERLI SKIKLDMNHFKINYSRKLANIPQQFYNQTAVSPKTAELKYESNKSNEWYKGLTPYQTYWA IKSVNKKGKEKMEYQMIDHYVFDFYKFQNGNEKELALYLAQRENKDEVLDAQIVYSLNKGDL LYINNHPCYFVSRKEVINAKQFELTVEQQLSLYNVMNNKETNVEKLLIEYDFIAEKVINEYH HYLNSKLKEKRVRTFFSESNQTHEDFIKALDELFKWTASATRSDKIGSRKNSMTHRAFLGK GKDVKIAYTSISGLKTTKPKSLFKLAESRNEL
SEQ ID NO: 331
MAKILGLDLGTNSIGWAWERENIDFSLIDKGVRIFSEGVKSEKGIESSRAAERTGYRSARK IKYRRKLRKYETLKVLSLNRMCPLSIEEVEEWKKSGFKDYPLNPEFLKWLSTDEESNVNPYF FRDRASKHKVSLFELGRAFYHIAQRRGFLSNRLDQSAEGILEEHCPKIEAIVEDLISIDEIS TNITDYFFETGILDSNEKNGYAKDLDEGDKKLVSLYKSLLAILKKNESDFENCKSEIIERLN KKDVLGKVKGKIKDISQAMLDGNYKTLGQYFYSLYSKEKIRNQYTSREEHYLSEFITICKVQ GIDQINEEEKINEKKFDGLAKDLYKAIFFQRPLKSQKGLIGKCSFEKSKSRCAISHPDFEEY RMWTYLNTIKIGTQSDKKLRFLTQDEKLKLVPKFYRKNDFNFDVLAKELIEKGSSFGFYKSS KKNDFFYWFNYKPTDTVAACQVAASLKNAIGEDWKTKSFKYQTINSNKEQVSRTVDYKDLWH LLTVATSDVYLYEFAIDKLGLDEKNAKAFSKTKLKKDFASLSLSAINKILPYLKEGLLYSHA VFVANIENIVDENIWKDEKQRDYIKTQISEI IENYTLEKSRFEIINGLLKEYKSENEDGKRV YYSKEAEQSFENDLKKKLVLFYKSNEIENKEQQETIFNELLPIFIQQLKDYEFIKIQRLDQK VLIFLKGKNETGQIFCTEEKGTAEEKEKKIKNRLKKLYHPSDIEKFKKKIIKDEFGNEKIVL GSPLTPSIKNPMAMRALHQLRKVLNALILEGQIDEKTIIHIEMARELNDANKRKGIQDYQND NKKFREDAIKEIKKLYFEDCKKEVEPTEDDILRYQLWMEQNRSEIYEEGKNISICDIIGSNP AYDIEHTIPRSRSQDNSQMNKTLCSQRFNREVKKQSMPIELNNHLEILPRIAHWKEEADNLT REIEIISRSIKAAATKEIKDKKIRRRHYLTLKRDYLQGKYDRFIWEEPKVGFKNSQIPDTGI ITKYAQAYLKSYFKKVESVKGGMVAEFRKIWGIQESFIDENGMKHYKVKDRSKHTHHTIDAI TIACMTKEKYDVLAHAWTLEDQQNKKEARSI IEASKPWKTFKEDLLKIEEEILVSHYTPDNV KKQAKKIVRVRGKKQFVAEVERDVNGKAVPKKAASGKTIYKLDGEGKKLPRLQQGDTIRGSL HQDSIYGAIKNPLNTDEIKYVIRKDLESIKGSDVESIVDEWKEKIKEAIANKVLLLSSNAQ QKNKLVGTVWMNEEKRIAINKVRIYANSVKNPLHIKEHSLLSKSKHVHKQKVYGQNDENYAM AIYELDGKRDFELINIFNLAKLIKQGQGFYPLHKKKEIKGKIVFVPIEKRNKRDVVLKRGQQ WFYDKEVENPKDISEIVDFKGRIYIIEGLSIQRIVRPSGKVDEYGVIMLRYFKEARKADDI KQDNFKPDGVFKLGENKPTRKMNHQFTAFVEGIDFKVLPSGKFEKI SEQ ID NO: 332
MEFKKVLGLDIGTNSIGCALLSLPKSIQDYGKGGRLEWLTSRVIPLDADYMKAFIDGKNGLP QVITPAGKRRQKRGSRRLKHRYKLRRSRLIRVFKTLNWLPEDFPLDNPKRIKETISTEGKFS FRISDYVPISDESYREFYREFGYPENEIEQVIEEINFRRKTKGKNKNPMIKLLPEDWWYYL RKKALIKPTTKEELIRIIYLFNQRRGFKSSRKDLTETAILDYDEFAKRLAEKEKYSAENYET KFVSITKVKEVVELKTDGRKGKKRFKVILEDSRIEPYEIERKEKPDWEGKEYTFLVTQKLEK GKFKQNKPDLPKEEDWALCTTALDNRMGSKHPGEFFFDELLKAFKEKRGYKIRQYPVNRWRY KKELEFIWTKQCQLNPELNNLNINKEILRKLATVLYPSQSKFFGPKIKEFENSDVLHIISED IIYYQRDLKSQKSLISECRYEKRKGIDGEIYGLKCIPKSSPLYQEFRIWQDIHNIKVIRKES EVNGKKKINIDETQLYINENIKEKLFELFNSKDSLSEKDILELISLNIINSGIKISKKEEET THRINLFANRKELKGNETKSRYRKVFKKLGFDGEYILNHPSKLNRLWHSDYSNDYADKEKTE KSILSSLGWKNRNGKWEKSKNYDVFNLPLEVAKAIANLPPLKKEYGSYSALAIRKMLWMRD GKYWQHPDQIAKDQENTSLMLFDKNLIQLTNNQRKVLNKYLLTLAEVQKRSTLIKQKLNEIE HNPYKLELVSDQDLEKQVLKSFLEKKNESDYLKGLKTYQAGYLIYGKHSEKDVPIVNSPDEL GEYIRKKLPNNSLRNPIVEQVIRETIFIVRDVWKSFGIIDEIHIELGRELKNNSEERKKTSE SQEKNFQEKERARKLLKELLNSSNFEHYDENGNKIFSSFTVNPNPDSPLDIEKFRIWKNQSG LTDEELNKKLKDEKIPTEIEVKKYILWLTQKCRSPYTGKIIPLSKLFDSNVYEIEHIIPRSK MKNDSTNNLVICELGVNKAKGDRLAANFISESNGKCKFGEVEYTLLKYGDYLQYCKDTFKYQ KAKYKNLLATEPPEDFIERQINDTRYIGRKLAELLTPWKDSKNIIFTIGSITSELKITWGL NGVWKDILRPRFKRLESIINKKLIFQDEDDPNKYHFDLSINPQLDKEGLKRLDHRHHALDAT IIAATTREHVRYLNSLNAADNDEEKREYFLSLCNHKIRDFKLPWENFTSEVKSKLLSCVVSY KESKPILSDPFNKYLKWEYKNGKWQKVFAIQIKNDRWKAVRRSMFKEPIGTVWIKKIKEVSL KEAIKIQAIWEEVKNDPVRKKKEKYIYDDYAQKVIAKIVQELGLSSSMRKQDDEKLNKFINE AKVSAGVNKNLNTTNKTIYNLEGRFYEKIKVAEYVLYKAKRMPLNKKEYIEKLSLQKMFNDL PNFILEKSILDNYPEILKELESDNKYI IEPHKKNNPVNRLLLEHILEYHNNPKEAFSTEGLE KLNKKAINKIGKPIKYITRLDGDINEEEIFRGAVFETDKGSNVYFVMYENNQTKDREFLKPN PSISVLKAIEHKNKIDFFAPNRLGFSRIILSPGDLVYVPTNDQYVLIKDNSSNETIINWDDN EFISNRIYQVKKFTGNSCYFLKNDIASLILSYSASNGVGEFGSQNISEYSVDDPPIRIKDVC IKIRVDRLGNVRPL
SEQ ID NO: 333
MKHILGLDLGTNSIGWALIERNIEEKYGKIIGMGSRIVPMGAELSKFEQGQAQTKNADRRTN RGARRLNKRYKQRRNKLIYILQKLDMLPSQIKLKEDFSDPNKIDKITILPISKKQEQLTAFD LVSLRVKALTEKVGLEDLGKIIYKYNQLRGYAGGSLEPEKEDIFDEEQSKDKKNKSFIAFSK IVFLGEPQEEIFKNKKLNRRAIIVETEEGNFEGSTFLENIKVGDSLELLINISASKSGDTIT IKLPNKTNWRKKMENIENQLKEKSKEMGREFYISEFLLELLKENRWAKIRNNTILRARYESE FEAIWNEQVKHYPFLENLDKKTLIEIVSFIFPGEKESQKKYRELGLEKGLKYIIKNQWFYQ RELKDQSHLISDCRYEPNEKAIAKSHPVFQEYKVWEQINKLIVNTKIEAGTNRKGEKKYKYI DRPIPTALKEWIFEELQNKKEITFSAIFKKLKAEFDLREGIDFLNGMSPKDKLKGNETKLQL QKSLGELWDVLGLDSINRQIELWNILYNEKGNEYDLTSDRTSKVLEFINKYGNNIVDDNAEE TAIRISKIKFARAYSSLSLKAVERILPLVRAGKYFNNDFSQQLQSKILKLLNENVEDPFAKA AQTYLDNNQSVLSEGGVGNSIATILVYDKHTAKEYSHDELYKSYKEINLLKQGDLRNPLVEQ IINEALVLIRDIWKNYGIKPNEIRVELARDLKNSAKERATIHKRNKDNQTINNKIKETLVKN KKELSLANIEKVKLWEAQRHLSPYTGQPIPLSDLFDKEKYDVDHIIPISRYFDDSFTNKVIS EKSVNQEKANRTAMEYFEVGSLKYSIFTKEQFIAHVNEYFSGVKRKNLLATSIPEDPVQRQI KDTQYIAIRVKEELNKIVGNENVKTTTGSITDYLRNHWGLTDKFKLLLKERYEALLESEKFL EAEYDNYKKDFDSRKKEYEEKEVLFEEQELTREEFIKEYKENYIRYKKNKLIIKGWSKRIDH RHHAIDALIVACTEPAHIKRLNDLNKVLQDWLVEHKSEFMPNFEGSNSELLEEILSLPENER TEIFTQIEKFRAIEMPWKGFPEQVEQKLKEI IISHKPKDKLLLQYNKAGDRQIKLRGQLHEG TLYGISQGKEAYRIPLTKFGGSKFATEKNIQKIVSPFLSGFIANHLKEYNNKKEEAFSAEGI MDLNNKLAQYRNEKGELKPHTPISTVKIYYKDPSKNKKKKDEEDLSLQKLDREKAFNEKLYV KTGDNYLFAVLEGEIKTKKTSQIKRLYDIISFFDATNFLKEEFRNAPDKKTFDKDLLFRQYF EERNKAKLLFTLKQGDFVYLPNENEEVILDKESPLYNQYWGDLKERGKNIYWQKFSKKQIY FIKHTIADIIKKDVEFGSQNCYETVEGRSIKENCFKLEIDRLGNIVKVIKR SEQ ID NO: 334
MHVEIDFPHFSRGDSHLAMNKNEILRGSSVLYRLGLDLGSNSLGWFVTHLEKRGDRHEPVAL GPGGVRIFPDGRDPQSGTS AVDRRMARGARKRRDRFVERRKELIAALIKYNLLPDDARERR ALEVLDPYALRKTALTDTLPAHHVGRALFHLNQRRGFQSNRKTDSKQSEDGAIKQAASRLAT DKGNETLGVFFADMHLRKSYEDRQTAIRAELVRLGKDHLTGNARKKIWAKVRKRLFGDEVLP RADAPHGVRARATITGTKASYDYYPTRDMLRDEFNAIWAGQSAHHATITDEARTEIEHI IFY QRPLKPAIVGKCTLDPATRPFKEDPEGYRAPWSHPLAQRFRILSEARNLEIRDTGKGSRRLT KEQSDLVVAALLANREVKFDKLRTLLKLPAEARFNLESDRRAALDGDQTAARLSDKKGFNKA WRGFPPERQIAIVARLEETEDENELIAWLEKECALDGAAAARVANTTLPDGHCRLGLRAIKK IVPIMQDGLDEDGVAGAGYHIAAKRAGYDHAKLPTGEQLGRLPYYGQWLQDAWGSGDARDQ KEKQYGQFPNPTVHIGLGQLRRVVNDLIDKYGPPTEISIEFTRALKLSEQQKAERQREQRRN QDKNKARAEELAKFGRPANPRNLLKMRLWEELAHDPLDRKCVYTGEQISIERLLSDEVDIDH ILPVAMTLDDSPANKIICMRYANRHKRKQTPSEAFGSSPTLQGHRYNWDDIAARATGLPRNK RWRFDANAREEFDKRGGFLARQLNETGWLARLAKQYLGAVTDPNQIWWPGRLTSMLRGKWG LNGLLPSDNYAGVQDKAEEFLASTDDMEFSGVKNRADHRHHAIDGLVTALTDRSLLWKMANA YDEEHEKFVIEPPWPTMRDDLKAALEKMWSHKPDHGIEGKLHEDSAYGFVKPLDATGLKEE EAGNLVYRKAIESLNENEVDRIRDIQLRTIVRDHVNVEKTKGVALADALRQLQAPSDDYPQF KHGLRHVRILKKEKGDYLVPIANRASGVAYKAYSAGENFCVEVFETAGGKWDGEAVRRFDAN KKNAGPKIAHAPQWRDANEGAKLVMRIHKGDLIRLDHEGRARIMWHRLDAAAGRFKLADHN ETGNLDKRHATNNDIDPFRWLMASYNTLKKLAAVPVRVDELGRVWRVMPN
SEQ ID NO: 335
METTLGIDLGTNSIGLALVDQEEHQILYSGVRIFPEGINKDTIGLGEKEESRNATRRAKRQM RRQYFRKKLRKAKLLELLIAYDMCPLKPEDVRRWKNWDKQQKSTVRQFPDTPAFREWLKQNP YELRKQAVTEDVTRPELGRILYQMIQRRGFLSSRKGKEEGKIFTGKDRMVGIDETRKNLQKQ TLGAYLYDIAPKNGEKYRFRTERVRARYTLRDMYIREFEIIWQRQAGHLGLAHEQATRKKNI FLEGSATNVRNSKLITHLQAKYGRGHVLIEDTRITVTFQLPLKEVLGGKIEIEEEQLKFKSN ESVLFWQRPLRSQKSLLSKCVFEGRNFYDPVHQKWIIAGPTPAPLSHPEFEEFRAYQFINNI IYGKNEHLTAIQREAVFELMCTESKDFNFEKIPKHLKLFEKFNFDDTTKVPACTTISQLRKL FPHPVWEEKREEIWHCFYFYDDNTLLFEKLQKDYALQTNDLEKIKKIRLSESYGNVSLKAIR RINPYLKKGYAYSTAVLLGGIRNSFGKRFEYFKEYEPEIEKAVCRILKEKNAEGEVIRKIKD YLVHNRFGFAKNDRAFQKLYHHSQAITTQAQKERLPETGNLRNPIVQQGLNELRRTVNKLLA TCREKYGPSFKFDHIHVEMGRELRSSKTEREKQSRQIRENEKKNEAAKVKLAEYGLKAYRDN IQKYLLYKEIEEKGGTVCCPYTGKTLNISHTLGSDNSVQIEHI IPYSISLDDSLANKTLCDA TFNREKGELTPYDFYQKDPSPEKWGASSWEEIEDRAFRLLPYAKAQRFIRRKPQESNEFISR QLNDTRYISKKAVEYLSAICSDVKAFPGQLTAELRHLWGLNNILQSAPDITFPLPVSATENH REYYVITNEQNEVIRLFPKQGETPRTEKGELLLTGEVERKVFRCKGMQEFQTDVSDGKYWRR IKLSSSVTWSPLFAPKPISADGQIVLKGRIEKGVFVCNQLKQKLKTGLPDGSYWISLPVISQ TFKEGESVNNSKLTSQQVQLFGRVREGIFRCHNYQCPASGADGNFWCTLDTDTAQPAFTPIK NAPPGVGGGQI ILTGDVDDKGIFHADDDLHYELPASLPKGKYYGIFTVESCDPTLIPIELSA PKTSKGENLIEGNIWVDEHTGEVRFDPKKNREDQRHHAIDAIVIALSSQSLFQRLSTYNARR ENKKRGLDSTEHFPSPWPGFAQDVRQSWPLLVSYKQNPKTLCKISKTLYKDGKKIHSCGNA VRGQLHKETVYGQRTAPGATEKSYHIRKDIRELKTSKHIGKWDITIRQMLLKHLQENYHID ITQEFNIPSNAFFKEGVYRIFLPNKHGEPVPIKKIRMKEELGNAERLKDNINQYVNPRNNHH VMIYQDADGNLKEEIVSFWSVIERQNQGQPIYQLPREGRNIVSILQINDTFLIGLKEEEPEV YRNDLSTLSKHLYRVQKLSGMYYTFRHHLASTLNNEREEFRIQSLEAWKRANPVKVQIDEIG RITFLNGPLC SEQ ID NO: 336
MESSQILSPIGIDLGGKFTGVCLSHLEAFAELPNHANTKYSVILIDHNNFQLSQAQRRATRH RVRNKKRNQFVKRVALQLFQHILSRDLNAKEETALCHYLNNRGYTYVDTDLDEYIKDETTIN LLKELLPSESEHNFIDWFLQKMQSSEFRKILVSKVEEKKDDKELKNAVKNIKNFITGFEKNS VEGHRHRKVYFENIKSDITKDNQLDSIKKKIPSVCLSNLLGHLSNLQWKNLHRYLAKNPKQF DEQTFGNEFLRMLKNFRHLKGSQESLAVRNLIQQLEQSQDYISILEKTPPEITIPPYEARTN TGMEKDQSLLLNPEKLNNLYPNWRNLIPGIIDAHPFLEKDLEHTKLRDRKRIISPSKQDEKR DSYILQRYLDLNKKIDKFKIKKQLSFLGQGKQLPANLIETQKEMETHFNSSLVSVLIQIASA YNKEREDAAQGIWFDNAFSLCELSNINPPRKQKILPLLVGAILSEDFINNKDKWAKFKIFWN THKIGRTSLKSKCKEIEEARKNSGNAFKIDYEEALNHPEHSNNKALIKIIQTIPDIIQAIQS HLGHNDSQALIYHNPFSLSQLYTILETKRDGFHKNCVAVTCENYWRSQKTEIDPEISYASRL PADSVRPFDGVLARMMQRLAYEIAMAKWEQIKHIPDNSSLLIPIYLEQNRFEFEESFKKIKG SSSDKTLEQAIEKQNIQWEEKFQRIINASMNICPYKGASIGGQGEIDHIYPRSLSKKHFGVI FNSEVNLIYCSSQGNREKKEEHYLLEHLSPLYLKHQFGTDNVSDIKNFISQNVANIKKYISF HLLTPEQQKAARHALFLDYDDEAFKTITKFLMSQQKARVNGTQKFLGKQIMEFLSTLADSKQ LQLEFSIKQITAEEVHDHRELLSKQEPKLVKSRQQSFPSHAIDATLTMSIGLKEFPQFSQEL DNSWFINHLMPDEVHLNPVRSKEKYNKPNISSTPLFKDSLYAERFIPVWVKGETFAIGFSEK DLFEIKPSNKEKLFTLLKTYSTKNPGESLQELQAKSKAKWLYFPINKTLALEFLHHYFHKEI VTPDDTTVCHFINSLRYYTKKESITVKILKEPMPVLSVKFESSKKNVLGSFKHTIALPATKD WERLFNHPNFLALKANPAPNPKEFNEFIRKYFLSDNNPNSDIPNNGHNIKPQKHKAVRKVFS LPVIPGNAGTMMRIRRKDNKGQPLYQLQTIDDTPSMGIQINEDRLVKQEVLMDAYKTRNLST IDGINNSEGQAYATFDNWLTLPVSTFKPEIIKLEMKPHSKTRRYIRITQSLADFIKTIDEAL MIKPSDSIDDPLNMPNEIVCKNKLFGNELKPRDGKMKIVSTGKIVTYEFESDSTPQWIQTLY VTQLKKQP
SEQ ID NO: 337
MKKIVGLDLGTNSIGWALINAYINKEHLYGIEACGSRIIPMDAAILGNFDKGNSISQTADRT SYRGIRRLRERHLLRRERLHRILDLLGFLPKHYSDSLNRYGKFLNDIECKLPWVKDETGSYK FIFQESFKEMLANFTEHHPILIANNKKVPYDWTIYYLRKKALTQKISKEELAWILLNFNQKR GYYQLRGEEEETPNKLVEYYSLKVEKVEDSGERKGKDTWYNVHLENGMIYRRTSNIPLDWEG KTKEFIVTTDLEADGSPKKDKEGNIKRSFRAPKDDDWTLIKKKTEADIDKIKMTVGAYIYDT LLQKPDQKIRGKLVRTIERKYYKNELYQILKTQSEFHEELRDKQLYIACLNELYPNNEPRRN SISTRDFCHLFIEDI IFYQRPLKSKKSLIDNCPYEENRYIDKESGEIKHASIKCIAKSHPLY QEFRLWQFIVNLRIYRKETDVDVTQELLPTEADYVTLFEWLNEKKEIDQKAFFKYPPFGFKK TTSNYRWNYVEDKPYPCNETHAQIIARLGKAHIPKAFLSKEKEETLWHILYSIEDKQEIEKA LHSFANKNNLSEEFIEQFKNFPPFKKEYGSYSAKAIKKLLPLMRMGKYWSIENIDNGTRIRI NKI IDGEYDENIRERVRQKAINLTDITHFRALPLWLACYLVYDRHSEVKDIVKWKTPKDIDL YLKSFKQHSLRNPIVEQVITETLRTVRDIWQQVGHIDEIHIELGREMKNPADKRARMSQQMI KNENTNLRIKALLTEFLNPEFGIENVRPYSPSQQDLLRIYEEGVLNSILELPEDIGIILGKF NQTDTLKRPTRSEILRYKLWLEQKYRSPYTGEMIPLSKLFTPAYEIEHIIPQSRYFDDSLSN KVICESEINKLKDRSLGYEFIKNHHGEKVELAFDKPVEVLSVEAYEKLVHESYSHNRSKMKK LLMEDIPDQFIERQLNDSRYISKWKSLLSNIVREENEQEAISKNVIPCTGGITDRLKKDWG INDVWNKIVLPRFIRLNELTESTRFTSINTNNTMIPSMPLELQKGFNKKRIDHRHHAMDAII IACANRNIVNYLNNVSASKNTKITRRDLQTLLCHKDKTDNNGNYKWVIDKPWETFTQDTLTA LQKITVSFKQNLRVINKTTNHYQHYENGKKIVSNQSKGDSWAIRKSMHKETVHGEVNLRMIK TVSFNEALKKPQAIVEMDLKKKILAMLELGYDTKRIKNYFEENKDTWQDINPSKIKVYYFTK ETKDRYFAVRKPIDTSFDKKKIKESITDTGIQQIMLRHLETKDNDPTLAFSPDGIDEMNRNI LILNKGKKHQPIYKVRVYEKAEKFTVGQKGNKRTKFVEAAKGTNLFFAIYETEEIDKDTKKV IRKRSYSTIPLNWIERQKQGLSSAPEDENGNLPKYILSPNDLVYVPTQEEINKGEWMPID RDRIYKMVDSSGITANFIPASTANLIFALPKATAEIYCNGENCIQNEYGIGSPQSKNQKAIT GEMVKEICFPIKVDRLGNI IQVGSCILTN
SEQ ID NO: 338
MSRSLTFSFDIGYASIGWAVIASASHDDADPSVCGCGTVLFPKDDCQAFKRREYRRLRRNIR SRRVRIERIGRLLVQAQIITPEMKETSGHPAPFYLASEALKGHRTLAPIELWHVLRWYAHNR GYDNNASWSNSLSEDGGNGEDTERVKHAQDLMDKHGTATMAETICRELKLEEGKADAPMEVS TPAYKNLNTAFPRLIVEKEVRRILELSAPLIPGLTAEIIELIAQHHPLTTEQRGVLLQHGIK LARRYRGSLLFGQLIPRFDNRIISRCPVTWAQVYEAELKKGNSEQSARERAEKLSKVPTANC PEFYEYRMARILCNIRADGEPLSAEIRRELMNQARQEGKLTKASLEKAISSRLGKETETNVS NYFTLHPDSEEALYLNPAVEVLQRSGIGQILSPSVYRIAANRLRRGKSVTPNYLLNLLKSRG ESGEALEKKIEKESKKKEADYADTPLKPKYATGRAPYARTVLKKWEEILDGEDPTRPARGE AHPDGELKAHDGCLYCLLDTDSSVNQHQKERRLDTMTNNHLVRHRMLILDRLLKDLIQDFAD GQKDRISRVCVEVGKELTTFSAMDSKKIQRELTLRQKSHTDAVNRLKRKLPGKALSANLIRK CRIAMDMNWTCPFTGATYGDHELENLELEHIVPHSFRQSNALSSLVLTWPGVNRMKGQRTGY DFVEQEQENPVPDKPNLHICSLNNYRELVEKLDDKKGHEDDRRRKKKRKALLMVRGLSHKHQ SQNHEAMKEIGMTEGMMTQSSHLMKLACKSIKTSLPDAHIDMIPGAVTAEVRKAWDVFGVFK ELCPEAADPDSGKILKENLRSLTHLHHALDACVLGLIPYIIPAHHNGLLRRVLAMRRIPEKL IPQVRPVANQRHYVLNDDGRMMLRDLSASLKENIREQLMEQRVIQHVPADMGGALLKETMQR VLSVDGSGEDAMVSLSKKKDGKKEKNQVKASKLVGVFPEGPSKLKALKAAIEIDGNYGVALD PKPWIRHIKVFKRIMALKEQNGGKPVRILKKGMLIHLTSSKDPKHAGVWRIESIQDSKGGV KLDLQRAHCAVPKNKTHECNWREVDLISLLKKYQMKRYPTSYTGTPR
SEQ ID NO: 339
MTQKVLGLDLGTNSIGSAVRNLDLSDDLQWQLEFFSSDIFRSSVNKESNGREYSLAAQRSAH RRSRGLNEVRRRRLWATLNLLIKHGFCPMSSESLMRWCTYDKRKGLFREYPIDDKDFNAWIL LDFNGDGRPDYSSPYQLRRELVTRQFDFEQPIERYKLGRALYHIAQHRGFKSSKGETLSQQE TNSKPSSTDEIPDVAGAMKASEEKLSKGLSTYMKEHNLLTVGAAFAQLEDEGVRVRNNNDYR AIRSQFQHEIETIFKFQQGLSVESELYERLISEKKNVGTIFYKRPLRSQRGNVGKCTLERSK PRCAIGHPLFEKFRAWTLINNIKVRMSVDTLDEQLPMKLRLDLYNECFLAFVRTEFKFEDIR KYLEKRLGIHFSYNDKTINYKDSTSVAGCPITARFRKMLGEEWESFRVEGQKERQAHSKNNI SFHRVSYSIEDIWHFCYDAEEPEAVLAFAQETLRLERKKAEELVRIWSAMPQGYAMLSQKAI RNINKILMLGLKYSDAVILAKVPELVDVSDEELLSIAKDYYLVEAQVNYDKRINSIVNGLIA KYKSVSEEYRFADHNYEYLLDESDEKDIIRQIENSLGARRWSLMDANEQTDILQKVRDRYQD FFRSHERKFVESPKLGESFENYLTKKFPMVEREQWKKLYHPSQITIYRPVSVGKDRSVLRLG NPDIGAIKNPTVLRVLNTLRRRVNQLLDDGVISPDETRVWETARELNDANRKWALDTYNRI RHDENEKIKKILEEFYPKRDGISTDDIDKARYVIDQREVDYFTGSKTYNKDIKKYKFWLEQG GQCMYTGRTINLSNLFDPNAFDIEHTIPESLSFDSSDMNLTLCDAHYNRFIKKNHIPTDMPN YDKAITIDGKEYPAITSQLQRWVERVERLNRNVEYWKGQARRAQNKDRKDQCMREMHLWKME LEYWKKKLERFTVTEVTDGFKNSQLVDTRVITRHAVLYLKSIFPHVDVQRGDVTAKFRKILG IQSVDEKKDRSLHSHHAIDATTLTIIPVSAKRDRMLELFAKIEEINKMLSFSGSEDRTGLIQ ELEGLKNKLQMEVKVCRIGHNVSEIGTFINDNIIVNHHIKNQALTPVRRRLRKKGYIVGGVD NPRWQTGDALRGEIHKASYYGAITQFAKDDEGKVLMKEGRPQVNPTIKFVIRRELKYKKSAA DSGFASWDDLGKAIVDKELFALMKGQFPAETSFKDACEQGIYMIKKGKNGMPDIKLHHIRHV RCEAPQSGLKIKEQTYKSEKEYKRYFYAAVGDLYAMCCYTNGKIREFRIYSLYDVSCHRKSD IEDIPEFITDKKGNRLMLDYKLRTGDMILLYKDNPAELYDLDNVNLSRRLYKINRFESQSNL VLMTHHLSTSKERGRSLGKTVDYQNLPESIRSSVKSLNFLIMGENRDFVIKNGKI IFNHR
SEQ ID NO: 340
MLVSPISVDLGGKNTGFFSFTDSLDNSQSGTVIYDESFVLSQVGRRSKRHSKRNNLRNKLVK RLFLLILQEHHGLSIDVLPDEIRGLFNKRGYTYAGFELDEKKKDALESDTLKEFLSEKLQSI DRDSDVEDFLNQIASNAESFKDYKKGFEAVFASATHSPNKKLELKDELKSEYGENAKELLAG LRVTKEILDEFDKQENQGNLPRAKYFEELGEYIATNEKVKSFFDSNSLKLTDMTKLIGNISN YQLKELRRYFNDKEMEKGDIWIPNKLHKITERFVRSWHPKNDADRQRRAELMKDLKSKEIME LLTTTEPVMTIPPYDDMNNRGAVKCQTLRLNEEYLDKHLPNWRDIAKRLNHGKFNDDLADST VKGYSEDSTLLHRLLDTSKEIDIYELRGKKPNELLVKTLGQSDANRLYGFAQNYYELIRQKV RAGIWVPVKNKDDSLNLEDNSNMLKRCNHNPPHKKNQIHNLVAGILGVKLDEAKFAEFEKEL WSAKVGNKKLSAYCKNIEELRKTHGNTFKIDIEELRKKDPAELSKEEKAKLRLTDDVILNEW SQKIANFFDIDDKHRQRFNNLFSMAQLHTVIDTPRSGFSSTCKRCTAENRFRSETAFYNDET GEFHKKATATCQRLPADTQRPFSGKIERYIDKLGYELAKIKAKELEGMEAKEIKVPIILEQN AFEYEESLRKSKTGSNDRVINSKKDRDGKKLAKAKENAEDRLKDKDKRIKAFSSGICPYCGD TIGDDGEIDHILPRSHTLKIYGTVFNPEGNLIYVHQKCNQAKADSIYKLSDIKAGVSAQWIE EQVA IKGYKTFSVLSAEQQKAFRYALFLQNDNEAYKKVVDWLRTDQSARVNGTQKYLAKKI QEKLTKMLPNKHLSFEFILADATEVSELRRQYARQNPLLAKAEKQAPSSHAIDAVMAFVARY QKVFKDGTPPNADEVAKLAMLDSWNPASNEPLTKGLSTNQKIEKMIKSGDYGQKNMREVFGK SIFGENAIGERYKPIWQEGGYYIGYPATVKKGYELKNCKWTSKNDIAKLEKIIKNQDLIS LKENQYIKIFSINKQTISELSNRYFNMNYKNLVERDKEIVGLLEFIVENCRYYTKKVDVKFA PKYIHETKYPFYDDWRRFDEAWRYLQENQNKTSSKDRFVIDKSSLNEYYQPDKNEYKLDVDT QPIWDDFCRWYFLDRYKTANDKKSIRIKARKTFSLLAESGVQGKVFRAKRKIPTGYAYQALP MDNNVIAGDYANILLEANSKTLSLVPKSGISIEKQLDKKLDVIKKTDVRGLAIDNNSFFNAD FDTHGIRLIVENTSVKVGNFPISAIDKSAKRMIFRALFEKEKGKRKKKTTISFKESGPVQDY LKVFLKKIVKIQLRTDGSISNIVVRKNAADFTLSFRSEHIQKLLK
SEQ ID NO: 341
MAYRLGLDIGITSVGWAWALEKDESGLKPVRIQDLGVRIFDKAEDSKTGASLALPRREARS ARRRTRRRRHRLWRVKRLLEQHGILSMEQIEALYAQRTSSPDVYALRVAGLDRCLIAEEIAR VLIHIAHRRGFQSNRKSEIKDSDAGKLLKAVQENENLMQSKGYRTVAEMLVSEATKTDAEGK LVHGKKHGYVSNVRNKAGEYRHTVSRQAIVDEVRKIFAAQRALGNDVMSEELEDSYLKILCS QRNFDDGPGGDSPYGHGSVSPDGVRQSIYERMVGSCTFETGEKRAPRSSYSFERFQLLTKW NLRIYRQQEDGGRYPCELTQTERARVIDCAYEQTKITYGKLRKLLDMKDTESFAGLTYGLNR SRNKTEDTVFVEMKFYHEVRKALQRAGVFIQDLSIETLDQIGWILSVWKSDDNRRKKLSTLG LSDNVIEELLPLNGSKFGHLSLKAIRKILPFLEDGYSYDVACELAGYQFQGKTEYVKQRLLP PLGEGEVTNPVVRRALSQAIKWNAVIRKHGSPESIHIELARELSKNLDERRKIEKAQKENQ KNNEQIKDEIREILGSAHVTGRDIVKYKLFKQQQEFCMYSGEKLDVTRLFEPGYAEVDHIIP YGISFDDSYDNKVLVKTEQNRQKGNRTPLEYLRDKPEQKAKFIALVESIPLSQKKKNHLLMD KRAIDLEQEGFRERNLSDTRYITRALMNHIQAWLLFDETASTRSKRVVCVNGAVTAYMRARW GLTKDRDAGDKHHAADAWVACIGDSLIQRVTKYDKFKRNALADRNRYVQQVSKSEGITQYV DKETGEVFTWESFDERKFLPNEPLEPWPFFRDELLARLSDDPSKNIRAIGLLTYSETEQIDP IFVSRMPTRKVTGAAHKETIRSPRIVKVDDNKGTEIQWVSKVALTELKLTKDGEIKDYFRP EDDPRLYNTLRERLVQFGGDAKAAFKEPVYKISKDGSVRTPVRKVKIQEKLTLGVPVHGGRG IAENGGMVRIDVFAKGGKYYFVPIYVADVLKRELPNRLATAHKPYSEWRWDDSYQFKFSLY PNDAVMIKPSREVDITYKDRKEPVGCRIMYFVSANIASASISLRTHDNSGELEGLGIQGLEV FEKYWGPLGDTHPVYKERRMPFRVERKMN
SEQ ID NO: 342
MPVLSPLSPNAAQGRRRWSLALDIGEGSIGWAVAEVDAEGRVLQLTGTGVTLFPSAWSNENG TYVAHGAADRAVRGQQQRHDSRRRRLAGLARLCAPVLERSPEDLKDLTRTPPKADPRAIFFL RADAARRPLDGPELFRVLHHMAAHRGIRLAELQEVDPPPESDADDAAPAATEDEDGTRRAAA DERAFRRLMAEHMHRHGTQPTCGEIMAGRLRETPAGAQPVTRARDGLRVGGGVAVPTRALIE QEFDAIRAIQAPRHPDLPWDSLRRLVLDQAPIAVPPATPCLFLEELRRRGETFQGRTITREA IDRGLTVDPLIQALRIRETVGNLRLHERITEPDGRQRYVPRAMPELGLSHGELTAPERDTLV RALMHDPDGLAAKDGRIPYTRLRKLIGYDNSPVCFAQERDTSGGGITVNPTDPLMARWIDGW VDLPLKARSLYVRDVVARGADSAALARLLAEGAHGVPPVAAAAVPAATAAILESDIMQPGRY SVCPWAAEAILDAWANAPTEGFYDVTRGLFGFAPGEIVLEDLRRARGALLAHLPRTMAAART PNRAAQQRGPLPAYESVIPSQLITSLRRAHKGRAADWSAADPEERNPFLRTWTGNAATDHIL NQVRKTANEVITKYGNRRGWDPLPSRITVELAREAKHGVIRRNEIAKENRENEGRRKKESAA LDTFCQDNTVSWQAGGLPKERAALRLRLAQRQEFFCPYCAERPKLRATDLFSPAETEIDHVI ERRMGGDGPDNLVLAHKDCNNAKGKKTPHEHAGDLLDSPALAALWQGWRKENADRLKGKGHK ARTPREDKDFMDRVGWRFEEDARAKAEENQERRGRRMLHDTARATRLARLYLAAAVMPEDPA EIGAPPVETPPSPEDPTGYTAIYRTISRVQPVNGSVTHMLRQRLLQRDKNRDYQTHHAEDAC LLLLAGPAWQAFNTEAAQHGADAPDDRPVDLMPTSDAYHQQRRARALGRVPLATVDAALAD IVMPESDRQDPETGRVHWRLTRAGRGLKRRIDDLTRNCVILSRPRRPSETGTPGALHNATHY GRREITVDGRTDTWTQRMNARDLVALLDNAKIVPAARLDAAAPGDTILKEICTEIADRHDR WDPEGTHARRWISARLAALVPAHAEAVARDIAELADLDALADADRTPEQEARRSALRQSPY LGRAISAKKADGRARAREQEILTRALLDPHWGPRGLRHLIMREARAPSLVRIRANKTDAFGR PVPDAAVWVKTDGNAVSQLWRLTSWTDDGRRIPLPKPIEKRIEISNLEYARLNGLDEGAGV TGNNAPPRPLRQDIDRLTPLWRDHGTAPGGYLGTAVGELEDKARSALRGKAMRQTLTDAGIT AEAGWRLDSEGAVCDLEVAKGDTVKKDGKTYKVGVITQGIFGMPVDAAGSAPRTPEDCEKFE EQYGIKPWKAKGIPLA
SEQ ID NO: 343
MNYTEKEKLFMKYILALDIGIASVGWAILDKESETVIEAGSNIFPEASAADNQLRRDMRGAK RNNRRLKTRINDFIKLWENNNLSIPQFKSTEIVGLKVRAITEEITLDELYLILYSYLKHRGI SYLEDALDDTVSGSSAYANGLKLNAKELETHYPCEIQQERLNTIGKYRGQSQIINENGEVLD LSNVFTIGAYRKEIQRVFEIQKKYHPELTDEFCDGYMLIFNRKRKYYEGPGNEKSRTDYGRF TTKLDANGNYITEDNIFEKLIGKCSVYPDELRAAAASYTAQEYNVLNDLNNLTINGRKLEEN EKHEIVERIKSSNTINMRKIISDCMGENIDDFAGARIDKSGKEIFHKFEVYNKMRKALLEIG IDISNYSREELDEIGYIMTINTDKEAMMEAFQKSWIDLSDDVKQCLINMRKTNGALFNKWQS FSLKIMNELIPEMYAQPKEQMTLLTEMGVTKGTQEEFAGLKYIPVDVVSEDIFNPWRRSVR ISFKILNAVLKKYKALDTIVIEMPRDRNSEEQKKRINDSQKLNEKEMEYIEKKLAVTYGIKL SPSDFSSQKQLSLKLKLWNEQDGICLYSGKTIDPNDIINNPQLFEIDHIIPRSISFDDARSN KVLVYRSENQKKGNQTPYYYLTHSHSEWSFEQYKATVMNLSKKKEYAISRKKIQNLLYSEDI TKMDVLKGFINRNINDTSYASRLVLNTIQNFFMANEADTKVKVIKGSYTHQMRCNLKLDKNR DESYSHHAVDAMLIGYSELGYEAYHKLQGEFIDFETGEILRKDMWDENMSDEVYADYLYGKK WANIRNEWKAEKNVKYWHYVMRKSNRGLCNQTIRGTREYDGKQYKINKLDIRTKEGIKVFA KLAFSKKDSDRERLLVYLNDRRTFDDLCKIYEDYSDAANPFVQYEKETGDI IRKYSKKHNGP RIDKLKYKDGEVGACIDISHKYGFEKGSKKVILESLVPYRMDVYYKEENHSYYLVGVKQSDI KFEKGRNVIDEEAYARILVNEKMIQPGQSRADLENLGFKFKLSFYKNDIIEYEKDGKIYTER LVSRTMPKQRNYIETKPIDKAKFEKQNLVGLGKTKFIKKYRYDILGNKYSCSEEKFTSFC
SEQ ID NO: 344
MLRLYCANNLVLNNVQNLWKYLLLLIFDKKI IFLFKIKVILIRRYMENNNKEKIVIGFDLGV ASVGWSIVNAETKEVIDLGVRLFSEPEKADYRRAKRTTRRLLRRKKFKREKFHKLILKNAEI FGLQSRNEILNVYKDQSSKYRNILKLKINALKEEIKPSELVWILRDYLQNRGYFYKNEKLTD EFVSNSFPSKKLHEHYEKYGFFRGSVKLDNKLDNKKDKAKEKDEEEESDAKKESEELIFSNK QWINEIVKVFENQSYLTESFKEEYLKLFNYVRPFNKGPGSKNSRTAYGVFSTDIDPETNKFK DYSNIWDKTIGKCSLFEEEIRAPKNLPSALIFNLQNEICTIKNEFTEFKNWWLNAEQKSEIL KFVFTELFNWKDKKYSDKKFNKNLQDKIKKYLLNFALENFNLNEEILKNRDLENDTVLGLKG VKYYEKSNATADAALEFSSLKPLYVFIKFLKEKKLDLNYLLGLENTEILYFLDSIYLAISYS SDLKERNEWFKKLLKELYPKIKNNNLEIIENVEDIFEITDQEKFESFSKTHSLSREAFNHII PLLLSNNEGKNYESLKHSNEELKKRTEKAELKAQQNQKYLKDNFLKEALVPLSVKTSVLQAI KIFNQIIKNFGKKYEISQVVIEMARELTKPNLEKLLNNATNSNIKILKEKLDQTEKFDDFTK KKFIDKIENSVVFRNKLFLWFEQDRKDPYTQLDIKINEIEDETEIDHVIPYSKSADDSWFNK LLVKKSTNQLKKNKTVWEYYQNESDPEAKWNKFVAWAKRIYLVQKSDKESKDNSEKNSIFKN KKPNLKFKNITKKLFDPYKDLGFLARNLNDTRYATKVFRDQLNNYSKHHSKDDENKLFKWC MNGSITSFLRKSMWRKNEEQVYRFNFWKKDRDQFFHHAVDASI IAIFSLLTKTLYNKLRVYE SYDVQRREDGVYLINKETGEVKKADKDYWKDQHNFLKIRENAIEIKNVLNNVDFQNQVRYSR KANTKLNTQLFNETLYGVKEFENNFYKLEKVNLFSRKDLRKFILEDLNEESEKNKKNENGSR KRILTEKYIVDEILQILENEEFKDSKSDINALNKYMDSLPSKFSEFFSQDFINKCKKENSLI LTFDAIKHNDPKKVIKIKNLKFFREDATLKNKQAVHKDSKNQIKSFYESYKCVGFIWLKNKN DLEESIFVPINSRVIHFGDKDKDIFDFDSYNKEKLLNEINLKRPENKKFNSINEIEFVKFVK PGALLLNFENQQIYYISTLESSSLRAKIKLLNKMDKGKAVSMKKITNPDEYKIIEHVNPLGI NLNWTKKLENNN
SEQ ID NO: 345
MLMSKHVLGLDLGVGSIGWCLIALDAQGDPAEILGMGSRWPLNNATKAIEAFNAGAAFTAS QERTARRTMRRGFARYQLRRYRLRRELEKVGMLPDAALIQLPLLELWELRERAATAGRRLTL PELGRVLCHINQKRGYRHVKSDAAAIVGDEGEKKKDSNSAYLAGIRANDEKLQAEHKTVGQY FAEQLRQNQSESPTGGISYRIKDQIFSRQCYIDEYDQIMAVQRVHYPDILTDEFIRMLRDEV IFMQRPLKSCKHLVSLCEFEKQERVMRVQQDDGKGGWQLVERRVKFGPKVAPKSSPLFQLCC IYEAVNNIRLTRPNGSPCDITPEERAKIVAHLQSSASLSFAALKKLLKEKALIADQLTSKSG LKGNSTRVALASALQPYPQYHHLLDMELETRMMTVQLTDEETGEVTEREVAWTDSYVRKPL YRLWHILYSIEEREAMRRALITQLGMKEEDLDGGLLDQLYRLDFVKPGYGNKSAKFICKLLP QLQQGLGYSEACAAVGYRHSNSPTSEEITERTLLEKIPLLQRNELRQPLVEKILNQMINLVN ALKAEYGIDEVRVELARELKMSREERERMARNNKDREERNKGVAAKIRECGLYPTKPRIQKY MLWKEAGRQCLYCGRSIEEEQCLREGGMEVEHIIPKSVLYDDSYGNKTCACRRCNKEKGNRT ALEYIRAKGREAEYMKRINDLLKEKKISYSKHQRLRWLKEDIPSDFLERQLRLTQYISRQAM AILQQGIRRVSASEGGVTARLRSLWGYGKILHTLNLDRYDSMGETERVSREGEATEELHITN WSKRMDHRHHAIDALWACTRQSYIQRLNRLSSEFGREDKKKEDQEAQEQQATETGRLSNLE RWLTQRPHFSVRTVSDKVAEILISYRPGQRVVTRGR IYRKKMADGREVSCVQRGVLVPRGE LMEASFYGKILSQGRVRIVKRYPLHDLKGEVVDPHLRELITTYNQELKSREKGAPIPPLCLD KDKKQEVRSVRCYAKTLSLDKAIPMCFDEKGEPTAFVKSASNHHLALYRTPKGKLVESIVTF WDAVDRARYGIPLVITHPREVMEQVLQRGDIPEQVLSLLPPSDWVFVDSLQQDEMWIGLSD EELQRALEAQNYRKISEHLYRVQKMSSSYYVFRYHLETSVADDKNTSGRIPKFHRVQSLKAY EERNIRKVRVDLLGRISLL
SEQ ID NO: 346
MSDLVLGLDIGIGSVGVGILNKVTGEI IHKNSRIFPAAQAENNLVRRTNRQGRRLARRKKHR RVRLNRLFEESGLITDFTKISINLNPYQLRVKGLTDELSNEELFIALKNMVKHRGISYLDDA SDDGNSSVGDYAQIVKENSKQLETKTPGQIQLERYQTYGQLRGDFTVEKDGKKHRLINVFPT SAYRSEALRILQTQQEFNPQITDEFINRYLEILTGKRKYYHGPGNEKSRTDYGRYRTSGETL DNIFGILIGKCTFYPDEFRAAKASYTAQEFNLLNDLNNLTVPTETKKLSKEQKNQIINYVKN EKAMGPAKLFKYIAKLLSCDVADIKGYRIDKSGKAEIHTFEAYRKMKTLETLDIEQMDRETL DKLAYVLTLNTEREGIQEALEHEFADGSFSQKQVDELVQFRKANSSIFGKGWHNFSVKLMME LIPELYETSEEQMTILTRLGKQKTTSSSNKTKYIDEKLLTEEIYNPVVAKSVRQAIKIVNAA IKEYGDFDNIVIEMARETNEDDEKKAIQKIQKANKDEKDAAMLKAANQYNGKAELPHSVFHG HKQLATKIRLWHQQGERCLYTGKTISIHDLINNSNQFEVDHILPLSITFDDSLANKVLVYAT ANQEKGQRTPYQALDSMDDAWSFRELKAFVRESKTLSNKKKEYLLTEEDISKFDVRKKFIER NLVDTRYASRVVLNALQEHFRAHKIDTKVSVVRGQFTSQLRRHWGIEKTRDTYHHHAVDALI IAASSQLNLWKKQKNTLVSYSEDQLLDIETGELISDDEYKESVFKAPYQHFVDTLKSKEFED SILFSYQVDSKFNRKISDATIYATRQAKVGKDKADETYVLGKIKDIYTQDGYDAFMKIYKKD KSKFLMYRHDPQTFEKVIEPILENYPNKQINEKGKEVPCNPFLKYKEEHGYIRKYSKKGNGP EIKSLKYYDSKLGNHIDITPKDSNNKVVLQSVSPWRADVYFNKTTGKYEILGLKYADLQFEK GTGTYKISQEKYNDIKKKEGVDSDSEFKFTLYKNDLLLVKDTETKEQQLFRFLSRTMPKQKH YVELKPYDKQKFEGGEALIKVLGNVANSGQCKKGLGKSNISIYKVRTDVLGNQHI IKNEGDK PKLDF
SEQ ID NO: 347
MNAEHGKEGLLIMEENFQYRIGLDIGITSVGWAVLQNNSQDEPVRITDLGVRIFDVAENPKN GDALAAPRRDARTTRRRLRRRRHRLERIKFLLQENGLIEMDSFMERYYKGNLPDVYQLRYEG LDRKLKDEELAQVLIHIAKHRGFRSTRKAETKEKEGGAVLKATTENQKIMQEKGYRTVGEML YLDEAFHTECLWNEKGYVLTPRNRPDDYKHTILRSMLVEEVHAIFAAQRAHGNQKATEGLEE AYVEIMTSQRSFDMGPGLQPDGKPSPYAMEGFGDRVGKCTFEKDEYRAPKATYTAELFVALQ KINHTKLIDEFGTGRFFSEEERKTIIGLLLSSKELKYGTIRKKLNIDPSLKFNSLNYSAKKE GETEEERVLDTEKAKFASMFWTYEYSKCLKDRTEEMPVGEKADLFDRIGEILTAYKNDDSRS SRLKELGLSGEEIDGLLDLSPAKYQRVSLKAMRKMQPYLEDGLIYDKACEAAGYDFRALNDG NKKHLLKGEEINAIVNDITNPWKRSVSQTIKVINAIIQKYGSPQAVNIELAREMSKNFQDR TNLEKEMKKRQQENERAKQQIIELGKQNPTGQDILKYRLWNDQGGYCLYSGKKIPLEELFDG GYDIDHILPYSITFDDSYRNKVLVTAQENRQKGNRTPYEYFGADEKRWEDYEASVRLLVRDY KKQQKLLKKNFTEEERKEFKERNLNDTKYITRWYNMIRQNLELEPFNHPEKKKQVWAVNGA VTSYLRKRWGLMQKDRSTDRHHAMDAVVIACCTDGMIHKISRYMQGRELAYSRNFKFPDEET GEILNRDNFTREQWDEKFGVKVPLPWNSFRDELDIRLLNEDPKNFLLTHADVQRELDYPGWM YGEEESPIEEGRYINYIRPLFVSRMPNHKVTGSAHDATIRSARDYETRGWITKVPLTDLKL NKDNEIEGYYDKDSDRLLYQALVRQLLLHGNDGKKAFAEDFHKPKADGTEGPWRKVKIEKK QTSGVMVRGGTGIAANGEMVRIDVFRENGKYYFVPVYTADWRKVLPNRAATHTKPYSEWRV MDDANFVFSLYSRDLIHVKSKKDIKTNLVNGGLLLQKEIFAYYTGADIATASIAGFANDSNF KFRGLGIQSLEIFEKCQVDILGNISWRHENRQEFH SEQ ID NO: 348
MRVLGLDAGIASLGWALIEIEESNRGELSQGTIIGAGTWMFDAPEEKTQAGAKLKSEQRRTF RGQRRWRRRRQRMNEVRRILHSHGLLPSSDRDALKQPGLDPWRIRAEALDRLLGPVELAVA LGHIARHRGFKSNSKGAKTNDPADDTSKMKRAVNETREKLARFGSAAKMLVEDESFVLRQTP TKNGASEIVRRFRNREGDYSRSLLRDDLAAEMRALFTAQARFQSAIATADLQTAFTKAAFFQ RPLQDSEKLVGPCPFEVDEKRAPKRGYSFELFRFLSRLNHVTLRDGKQERTLTRDELALAAA DFGAAAKVSFTALRKKLKLPETTVFVGVKADEESKLDWARSGKAAEGTARLRSVIVDALGE LAWGALLCSPEKLDKIAEVISFRSDIGRISEGLAQAGCNAPLVDALTAAASDGRFDPFTGAG HISSKAARNILSGLRQGMTYDKACCAADYDHTASRERGAFDVGGHGREALKRILQEERISRE LVGSPTARKALIESIKQVKAIVERYGVPDRIHVELARDVGKSIEEREEITRGIEKRNRQKDK LRGLFEKEVGRPPQDGARGKEELLRFELWSEQMGRCLYTDDYISPSQLVATDDAVQVDHILP WSRFADDSYANKTLCMAKANQDKKGRTPYEWFKAEKTDTEWDAFIVRVEALADMKGFKKRNY KLRNAEEAAAKFRNRNLNDTRWACRLLAEALKQLYPKGEKDKDGKERRRVFSRPGALTDRLR RAWGLQWMKKSTKGDRIPDDRHHALDAIVIAATTESLLQRATREVQEIEDKGLHYDLVKNVT PPWPGFREQAVEAVEKVFVARAERRRARGKAHDATIRHIAVREGEQRVYERRKVAELKLADL DRVKDAERNARLIEKLRNWIEAGSPKDDPPLSPKGDPIFKVRLVTKSKVNIALDTGNPKRPG TVDRGEMARVDVFRKASKKGKYEYYLVPIYPHDIATMKTPPIRAVQAYKPEDEWPEMDSSYE FCWSLVPMTYLQVISSKGEIFEGYYRGMNRSVGAIQLSAHSNSSDWQGIGARTLTEFKKFN VDRFGRKHEVERELRTWRGETWRGKAYI SEQ ID NO: 349
MGNYYLGLDVGIGSIGWAVINIEKKRIEDFNVRIFKSGEIQEKNRNSRASQQCRRSRGLRRL YRRKSHRKLRLKNYLSIIGLTTSEKIDYYYETADNNVIQLRNKGLSEKLTPEEIAACLIHIC NNRGYKDFYEVNVEDIEDPDERNEYKEEHDSIVLISNLMNEGGYCTPAEMICNCREFDEPNS VYRKFHNSAASKNHYLITRHMLVKEVDLILENQSKYYGILDDKTIAKIKDI IFAQRDFEIGP GKNERFRRFTGYLDSIGKCQFFKDQERGSRFTVIADIYAFVNVLSQYTYTNNRGESVFDTSF ANDLINSALKNGSMDKRELKAIAKSYHIDISDKNSDTSLTKCFKYIKWKPLFEKYGYDWDK LIENYTDTDNNVLNRIGIVLSQAQTPKRRREKLKALNIGLDDGLINELTKLKLSGTANVSYK YMQGSIEAFCEGDLYGKYQAKFNKEIPDIDENAKPQKLPPFKNEDDCEFFKNPWFRSINET RKLINAI IDKYGYPAAVNIETADELNKTFEDRAIDTKRNNDNQKENDRIVKEIIECIKCDEV HARHLIEKYKLWEAQEGKCLYSGETITKEDMLRDKDKLFEVDHIVPYSLILDNTINNKALVY AEENQKKGQRTPLMYMNEAQAADYRVRVNTMFKSKKCSKKKYQYLMLPDLNDQELLGGWRSR NLNDTRYICKYLVNYLRKNLRFDRSYESSDEDDLKIRDHYRVFPVKSRFTSMFRRWWLNEKT WGRYDKAELKKLTYLDHAADAII IANCRPEYWLAGEKLKLNKMYHQAGKRITPEYEQSKKA CIDNLYKLFRMDRRTAEKLLSGHGRLTPIIPNLSEEVDKRLWDKNIYEQFWKDDKDKKSCEE LYRENVASLYKGDPKFASSLSMPVISLKPDHKYRGTITGEEAIRVKEIDGKLIKLKRKSISE ITAESINSIYTDDKILIDSLKTIFEQADYKDVGDYLKKTNQHFFTTSSGKRVNKVTVIEKVP SRWLRKEIDDNNFSLLNDSSYYCIELYKDSKGDNNLQGIAMSDIVHDRKTKKLYLKPDFNYP DDYYTHVMYIFPGDYLRIKSTSKKSGEQLKFEGYFISVKNVNENSFRFISDNKPCAKDKRVS ITKKDIVIKLAVDLMGKVQGENNGKGISCGEPLSLLKEKN SEQ ID NO: 350
MLSRQLLGASHLARPVSYSYNVQDNDVHCSYGERCFMRGKRYRIGIDVGLNSVGLAAVEVSD ENSPVRLLNAQSVIHDGGVDPQKNKEAITRKNMSGVARRTRRMRRRKRERLHKLDMLLGKFG YPVIEPESLDKPFEEWHVRAELATRYIEDDELRRESISIALRHMARHRGWRNPYRQVDSLIS DNPYSKQYGELKEKAKAYNDDATAAEEESTPAQLVVAMLDAGYAEAPRLRWRTGSKKPDAEG YLPVRLMQEDNANELKQIFRVQRVPADEWKPLFRSVFYAVSPKGSAEQRVGQDPLAPEQARA LKASLAFQEYRIANVITNLRIKDASAELRKLTVDEKQSIYDQLVSPSSEDITWSDLCDFLGF KRSQLKGVGSLTEDGEERISSRPPRLTSVQRIYESDNKIRKPLVAWWKSASDNEHEAMIRLL SNTVDIDKVREDVAYASAIEFIDGLDDDALTKLDSVDLPSGRAAYSVETLQKLTRQMLTTDD DLHEARKTLFNVTDSWRPPADPIGEPLGNPSVDRVLKNVNRYLMNCQQRWGNPVSVNIEHVR SSFSSVAFARKDKREYEKNNEKRSIFRSSLSEQLRADEQMEKVRESDLRRLEAIQRQNGQCL YCGRTITFRTCEMDHIVPRKGVGSTNTRTNFAAVCAECNRMKSNTPFAIWARSEDAQTRGVS LAEAKKRVTMFTFNPKSYAPREVKAFKQAVIARLQQTEDDAAIDNRSIESVAWMADELHRRI DWYFNAKQYVNSASIDDAEAETMKTTVSVFQGRVTASARRAAGIEGKIHFIGQQSKTRLDRR HHAVDASVIAMMNTAAAQTLMERESLRESQRLIGLMPGERSWKEYPYEGTSRYESFHLWLDN MDVLLELLNDALDNDRIAVMQSQRYVLGNSIAHDATIHPLEKVPLGSAMSADLIRRASTPAL WCALTRLPDYDEKEGLPEDSHREIRVHDTRYSADDEMGFFASQAAQIAVQEGSADIGSAIHH ARVYRCWKTNAKGVRKYFYGMIRVFQTDLLRACHDDLFTVPLPPQSISMRYGEPRWQALQS GNAQYLGSLWGDEIEMDFSSLDVDGQIGEYLQFFSQFSGGNLAWKHWWDGFFNQTQLRIR PRYLAAEGLAKAFSDDWPDGVQKIVTKQGWLPPVNTASKTAVRIVRRNAFGEPRLSSAHHM PCSWQWRHE
SEQ ID NO: 351
MYSIGLDLGISSVGWSVIDERTGNVIDLGVRLFSAKNSEKNLERRTNRGGRRLIRRKTNRLK DAKKILAAVGFYEDKSLKNSCPYQLRVKGLTEPLSRGEIYKVTLHILKKRGISYLDEVDTEA AKESQDYKEQVRKNAQLLTKYTPGQIQLQRLKENNRVKTGINAQGNYQLNVFKVSAYANELA TILKTQQAFYPNELTDDWIALFVQPGIAEEAGLIYRKRPYYHGPGNEANNSPYGRWSDFQKT GEPATNIFDKLIGKDFQGELRASGLSLSAQQYNLLNDLTNLKIDGEVPLSSEQKEYILTELM TKEFTRFGVNDWKLLGVKKERLSGWRLDKKGKPEIHTLKGYRNWRKIFAEAGIDLATLPTE TIDCLAKVLTLNTEREGIENTLAFELPELSESVKLLVLDRYKELSQSISTQSWHRFSLKTLH LLIPELMNATSEQNTLLEQFQLKSDVRKRYSEYKKLPTKDVLAEIYNPTVNKTVSQAFKVID ALLVKYGKEQIRYITIEMPRDDNEEDEKKRIKELHAKNSQRKNDSQSYFMQKSGWSQEKFQT TIQKNRRFLAKLLYYYEQDGICAYTGLPISPELLVSDSTEIDHIIPISISLDDSINNKVLVL SKANQVKGQQTPYDAWMDGSFKKINGKFSNWDDYQKWVESRHFSHKKENNLLETRNIFDSEQ VEKFLARNLNDTRYASRLVLNTLQSFFTNQETKVRWNGSFTHTLRKKWGADLDKTRETHHH HAVDATLCAVTSFVKVSRYHYAVKEETGEKVMREIDFETGEIVNEMSYWEFKKSKKYERKTY QVKWPNFREQLKPVNLHPRIKFSHQVDRKANRKLSDATIYSVREKTEVKTLKSGKQKITTDE YTIGKIKDIYTLDGWEAFKKKQDKLLMKDLDEKTYERLLSIAETTPDFQEVEEKNGKVKRVK RSPFAVYCEENDIPAIQKYAKKNNGPLIRSLKYYDGKLNKHINITKDSQGRPVEKTKNGRKV TLQSLKPYRYDIYQDLETKAYYTVQLYYSDLRFVEGKYGITEKEYMKKVAEQTKGQWRFCF SLQKNDGLEIEWKDSQRYDVRFYNFQSANSINFKGLEQEMMPAENQFKQKPYNNGAINLNIA KYGKEGKKLRKFNTDILGKKHYLFYEKEPKNIIK
SEQ ID NO: 352
MYFYKNKENKLNKKVVLGLDLGIASVGWCLTDISQKEDNKFPI ILHGVRLFETVDDSDDKLL NETRRKKRGQRRRNRRLFTRKRDFIKYLIDNNIIELEFDKNPKILVRNFIEKYINPFSKNLE LKYKSVTNLPIGFHNLRKAAINEKYKLDKSELIVLLYFYLSLRGAFFDNPEDTKSKEMNKNE IEIFDKNESIKNAEFPIDKIIEFYKISGKIRSTINLKFGHQDYLKEIKQVFEKQNIDFMNYE KFAMEEKSFFSRIRNYSEGPGNEKSFSKYGLYANENGNPELIINEKGQKIYTKIFKTLWESK IGKCSYDKKLYRAPKNSFSAKVFDITNKLTDWKHKNEYISERLKRKILLSRFLNKDSKSAVE KILKEENIKFENLSEIAYNKDDNKINLPIINAYHSLTTIFKKHLINFENYLISNENDLSKLM SFYKQQSEKLFVPNEKGSYEINQNNNVLHIFDAISNILNKFSTIQDRIRILEGYFEFSNLKK DVKSSEIYSEIAKLREFSGTSSLSFGAYYKFIPNLISEGSKNYSTISYEEKALQNQKNNFSH SNLFEKTWVEDLIASPTVKRSLRQTMNLLKEIFKYSEKNNLEIEKIVVEVTRSSNNKHERKK IEGINKYRKEKYEELKKVYDLPNENTTLLKKLWLLRQQQGYDAYSLRKIEANDVINKPWNYD IDHIVPRSISFDDSFSNLVIVNKLDNAKKSNDLSAKQFIEKIYGIEKLKEAKENWGNWYLRN ANGKAFNDKGKFIKLYTIDNLDEFDNSDFINRNLSDTSYITNALVNHLTFSNSKYKYSVVSV NGKQTSNLRNQIAFVGIKNNKETEREWKRPEGFKSINSNDFLIREEGKNDVKDDVLIKDRSF NGHHAEDAYFITIISQYFRSFKRIERLNVNYRKETRELDDLEKNNIKFKEKASFDNFLLINA LDELNEKLNQMRFSRMVITKKNTQLFNETLYSGKYDKGKNTIKKVEKLNLLDNRTDKIKKIE EFFDEDKLKENELTKLHIFNHDKNLYETLKI IWNEVKIEIKNKNLNEKNYFKYFVNKKLQEG KISFNEWVPILDNDFKIIRKIRYIKFSSEEKETDEIIFSQSNFLKIDQRQNFSFHNTLYWVQ IWVYKNQKDQYCFISIDARNSKFEKDEIKINYEKLKTQKEKLQIINEEPILKINKGDLFENE EKELFYIVGRDEKPQKLEIKYILGKKIKDQKQIQKPVKKYFPNWKKVNLTYMGEIFKK
SEQ ID NO: 353
MDNKNYRIGIDVGLNSIGFCAVEVDQHDTPLGFLNLSVYRHDAGIDPNGKKTNTTRLAMSGV ARRTRRLFRKRKRRLAALDRFIEAQGWTLPDHADYKDPYTPWLVRAELAQTPIRDENDLHEK LAIAVRHIARHRGWRSPWVPVRSLHVEQPPSDQYLALKERVEAKTLLQMPEGATPAEMVVAL DLSVDVNLRPKNREKTDTRPENKKPGFLGGKLMQSDNANELRKIAKIQGLDDALLRELIELV FAADSPKGASGELVGYDVLPGQHGKRRAEKAHPAFQRYRIASIVSNLRIRHLGSGADERLDV ETQKRVFEYLLNAKPTADITWSDVAEEIGVERNLLMGTATQTADGERASAKPPVDVTNVAFA TCKIKPLKEWWLNADYEARCVMVSALSHAEKLTEGTAAEVEVAEFLQNLSDEDNEKLDSFSL PIGRAAYSVDSLERLTKRMIENGEDLFEARVNEFGVSEDWRPPAEPIGARVGNPAVDRVLKA VNRYLMAAEAEWGAPLSVNIEHVREGFISKRQAVEIDRENQKRYQRNQAVRSQIADHINATS GVRGSDVTRYLAIQRQNGECLYCGTAITFVNSEMDHIVPRAGLGSTNTRDNLVATCERCNKS KSNKPFAVWAAECGIPGVSVAEALKRVDFWIADGFASSKEHRELQKGVKDRLKRKVSDPEID NRSMESVAWMARELAHRVQYYFDEKHTGTKVRVFRGSLTSAARKASGFESRVNFIGGNGKTR LDRRHHAMDAATVAMLRNSVAKTLVLRGNIRASERAIGAAETWKSFRGENVADRQIFESWSE NMRVLVEKFNLALYNDEVSIFSSLRLQLGNGKAHDDTITKLQMHKVGDAWSLTEIDRASTPA LWCALTRQPDFTWKDGLPANEDRTIIVNGTHYGPLDKVGIFGKAAASLLVRGGSVDIGSAIH HARIYRIAGKKPTYGMVRVFAPDLLRYRNEDLFNVELPPQSVSMRYAEPKVREAIREGKAEY LGWLWGDELLLDLSSETSGQIAELQQDFPGTTHWTVAGFFSPSRLRLRPVYLAQEGLGEDV SEGSKSI IAGQGWRPAVNKVFGSAMPEVIRRDGLGRKRRFSYSGLPVSWQG
SEQ ID NO: 354
MRLGLDIGTSSIGWWLYETDGAGSDARITGVVDGGVRIFSDGRDPKSGASLAVDRRAARAMR RRRDRYLRRRATLMKVLAETGLMPADPAEAKALEALDPFALRAAGLDEPLPLPHLGRALFHL NQRRGFKSNRKTDRGDNESGKIKDATARLDMEMMANGARTYGEFLHKRRQKATDPRHVPSVR TRLSIANRGGPDGKEEAGYDFYPDRRHLEEEFHKLWAAQGAHHPELTETLRDLLFEKIFFQR PLKEPEVGLCLFSGHHGVPPKDPRLPKAHPLTQRRVLYETVNQLRVTADGREARPLTREERD QVIHALDNKKPTKSLSSMVLKLPALAKVLKLRDGERFTLETGVRDAIACDPLRASPAHPDRF GPRWSILDADAQWEVISRIRRVQSDAEHAALVDWLTEAHGLDRAHAEATAHAPLPDGYGRLG LTATTRILYQLTADVVTYADAVKACGWHHSDGRTGECFDRLPYYGEVLERHVIPGSYHPDDD DITRFGRITNPTVHIGLNQLRRLVNRI IETHGKPHQIWELARDLKKSEEQKRADIKRIRDT TEAAKKRSEKLEELEIEDNGRNRMLLRLWEDLNPDDAMRRFCPYTGTRISAAMIFDGSCDVD HILPYSRTLDDSFPNRTLCLREANRQKRNQTPWQAWGDTPHWHAIAANLKNLPENKRWRFAP DAMTRFEGENGFLDRALKDTQYLARISRSYLDTLFTKGGHVWVVPGRFTEMLRRHWGLNSLL SDAGRGAVKAKNRTDHRHHAIDAAVIAATDPGLLNRISRAAGQGEAAGQSAELIARDTPPPW EGFRDDLRVRLDRIIVSHRADHGRIDHAARKQGRDSTAGQLHQETAYSIVDDIHVASRTDLL SLKPAQLLDEPGRSGQVRDPQLRKALRVATGGKTGKDFENALRYFASKPGPYQAIRRVRIIK PLQAQARVPVPAQDPIKAYQGGSNHLFEIWRLPDGEIEAQVITSFEAHTLEGEKRPHPAAKR LLRVHKGDMVALERDGRRVVGHVQKMDIANGLFIVPHNEANADTRNNDKSDPFKWIQIGARP AIASGIRRVSVDEIGRLRDGGTRPI
SEQ ID NO: 355
MLHCIAVIRVPPSEEPGFFETHADSCALCHHGCMTYAANDKAIRYRVGIDVGLRSIGFCAVE VDDEDHPIRILNSWHVHDAGTGGPGETESLRKRSGVAARARRRGRAEKQRLKKLDVLLEEL GWGVSSNELLDSHAPWHIRKRLVSEYIEDETERRQCLSVAMAHIARHRGWRNSFSKVDTLLL EQAPSDRMQGLKERVEDRTGLQFSEEVTQGELVATLLEHDGDVTIRGFVRKGGKATKVHGVL EGKYMQSDLVAELRQICRTQRVSETTFEKLVLSIFHSKEPAPSAARQRERVGLDELQLALDP AAKQPRAERAHPAFQKFKVVATLANMRIREQSAGERSLTSEELNRVARYLLNHTESESPTWD DVARKLEVPRHRLRGSSRASLETGGGLTYPPVDDTTVRVMSAEVDWLADWWDCANDESRGHM IDAISNGCGSEPDDVEDEEVNELISSATAEDMLKLELLAKKLPSGRVAYSLKTLREVTAAIL ETGDDLSQAITRLYGVDPGWVPTPAPIEAPVGNPSVDRVLKQVARWLKFASKRWGVPQTVNI EHTREGLKSASLLEEERERWERFEARREIRQKEMYKRLGISGPFRRSDQVRYEILDLQDCAC LYCGNEINFQTFEVDHIIPRVDASSDSRRTNLAAVCHSCNSAKGGLAFGQWVKRGDCPSGVS LENAIKRVRSWSKDRLGLTEKAMGKRKSEVISRLKTEMPYEEFDGRSMESVAWMAIELKKRI EGYFNSDRPEGCAAVQVNAYSGRLTACARRAAHVDKRVRLIRLKGDDGHHKNRFDRRNHAMD ALVIALMTPAIARTIAVREDRREAQQLTRAFESWKNFLGSEERMQDRWESWIGDVEYACDRL NELIDADKIPVTENLRLRNSGKLHADQPESLKKARRGSKRPRPQRYVLGDALPADVINRVTD PGLWTALVRAPGFDSQLGLPADLNRGLKLRGKRISADFPIDYFPTDSPALAVQGGYVGLEFH HARLYRI IGPKEKVKYALLRVCAIDLCGIDCDDLFEVELKPSSISMRTADAKLKEAMGNGSA KQIGWLVLGDEIQIDPTKFPKQSIGKFLKECGPVSSWRVSALDTPSKITLKPRLLSNEPLLK TSRVGGHESDLWAECVEKIMKKTGWVVEINALCQSGLIRVIRRNALGEVRTSPKSGLPISL NLR SEQ ID NO: 356
MRYRVGLDLGTASVGAAVFSMDEQGNPMELIWHYERLFSEPLVPDMGQLKPKKAARRLARQQ RRQIDRRASRLRRIAIVSRRLGIAPGRNDSGVHGNDVPTLRAMAVNERIELGQLRAVLLRMG KKRGYGGTFKAVRKVGEAGEVASGASRLEEEMVALASVQNKDSVTVGEYLAARVEHGLPSKL KVAANNEYYAPEYALFRQYLGLPAIKGRPDCLPNMYALRHQIEHEFERIWATQSQFHDVMKD HGVKEEIRNAIFFQRPLKSPADKVGRCSLQTNLPRAPRAQIAAQNFRIEKQMADLRWGMGRR AEMLNDHQKAVIRELLNQQKELSFRKIYKELERAGCPGPEGKGLNMDRAALGGRDDLSGNTT LAAWRKLGLEDRWQELDEVTQIQVINFLADLGSPEQLDTDDWSCRFMGKNGRPRNFSDEFVA FMNELRMTDGFDRLSKMGFEGGRSSYSIKALKALTEWMIAPHWRETPETHRVDEEAAIRECY PESLATPAQGGRQSKLEPPPLTGNEWDVALRQVRHTINMMIDDLGSVPAQIWEMAREMKG GVTRRNDIEKQNKRFASERKKAAQSIEENGKTPTPARILRYQLWIEQGHQCPYCESNISLEQ ALSGAYTNFEHILPRTLTQIGRKRSELVLAHRECNDEKGNRTPYQAFGHDDRRWRIVEQRAN ALPKKSSRKTRLLLLKDFEGEALTDESIDEFADRQLHESSWLAKVTTQWLSSLGSDVYVSRG SLTAELRRRWGLDTVIPQVRFESGMPVVDEEGAEITPEEFEKFRLQWEGHRVTREMRTDRRP DKRIDHRHHLVDAIVTALTSRSLYQQYAKAWKVADEKQRHGRVDVKVELPMPILTIRDIALE AVRSVRISHKPDRYPDGRFFEATAYGIAQRLDERSGEKVDWLVSRKSLTDLAPEKKSIDVDK VRANISRIVGEAIRLHISNIFEKRVSKGMTPQQALREPIEFQGNILRKVRCFYSKADDCVRI EHSSRRGHHYKMLLNDGFAYMEVPCKEGILYGVPNLVRPSEAVGIKRAPESGDFIRFYKGDT VKNIKTGRVYTIKQILGDGGGKLILTPVTETKPADLLSAKWGRLKVGGRNIHLLRLCAE
SEQ ID NO: 357
MIGEHVRGGCLFDDHWTPNWGAFRLPNTVRTFTKAENPKDGSSLAEPRRQARGLRRRLRRKT QRLEDLRRLLAKEGVLSLSDLETLFRETPAKDPYQLRAEGLDRPLSFPEWVRVLYHITKHRG FQSNRRNPVEDGQERSRQEEEGKLLSGVGENERLLREGGYRTAGEMLARDPKFQDHRRNRAG DYSHTLSRSLLLEEARRLFQSQRTLGNPHASSNLEEAFLHLVAFQNPFASGEDIRNKAGHCS LEPDQIRAPRRSASAETFMLLQKTGNLRLIHRRTGEERPLTDKEREQIHLLAWKQEKVTHKT LRRHLEIPEEWLFTGLPYHRSGDKAEEKLFVHLAGIHEIRKALDKGPDPAVWDTLRSRRDLL DSIADTLTFYKNEDEILPRLESLGLSPENARALAPLSFSGTAHLSLSALGKLLPHLEEGKSY TQARADAGYAAPPPDRHPKLPPLEEADWRNPWFRALTQTRKVVNALVRRYGPPWCIHLETA RELSQPAKVRRRIETEQQANEKKKQQAEREFLDIVGTAPGPGDLLKMRLWREQGGFCPYCEE YLNPTRLAEPGYAEMDHILPYSRSLDNGWHNRVLVHGKDNRDKGNRTPFEAFGGDTARWDRL VAWVQASHLSAPKKRNLLREDFGEEAERELKDRNLTDTRFITKTAATLLRDRLTFHPEAPKD PVMTLNGRLTAFLRKQWGLHKNRKNGDLHHALDAAVLAVASRSFVYRLSSHNAAWGELPRGR EAENGFSLPYPAFRSEVLARLCPTREEILLRLDQGGVGYDEAFRNGLRPVFVSRAPSRRLRG KAHMETLRSPKWKDHPEGPRTASRIPLKDLNLEKLERMVGKDRDRKLYEALRERLAAFGGNG KKAFVAPFRKPCRSGEGPLVRSLRIFDSGYSGVELRDGGEVYAVADHESMVRVDVYAKKNRF YLVPVYVADVARGIVKNRAIVAHKSEEEWDLVDGSFDFRFSLFPGDLVEIEKKDGAYLGYYK SCHRGDGRLLLDRHDRMPRESDCGTFYVSTRKDVLSMSKYQVDPLGEIRLVGSEKPPFVL
SEQ ID NO: 358
MEKKRKVTLGFDLGIASVGWAIVDSETNQVYKLGSRLFDAPDTNLERRTQRGTRRLLRRRKY RNQKFYNLVKRTEVFGLSSREAIENRFRELSIKYPNIIELKTKALSQEVCPDEIAWILHDYL KNRGYFYDEKETKEDFDQQTVESMPSYKLNEFYKKYGYFKGALSQPTESEMKDNKDLKEAFF FDFSNKEWLKEINYFFNVQKNILSETFIEEFKKIFSFTRDISKGPGSDNMPSPYGIFGEFGD NGQGGRYEHIWDKNIGKCSIFTNEQRAPKYLPSALIFNFLNELANIRLYSTDKKNIQPLWKL SSVDKLNILLNLFNLPISEKKKKLTSTNINDIVKKESIKSIMISVEDIDMIKDEWAGKEPNV YGVGLSGLNIEESAKENKFKFQDLKILNVLINLLDNVGIKFEFKDRNDIIKNLELLDNLYLF LIYQKESNNKDSSIDLFIAKNESLNIENLKLKLKEFLLGAGNEFENHNSKTHSLSKKAIDEI LPKLLDNNEGWNLEAIKNYDEEIKSQIEDNSSLMAKQDKKYLNDNFLKDAILPPNVKVTFQQ AILIFNKIIQKFSKDFEIDKWIELAREMTQDQENDALKGIAKAQKSKKSLVEERLEANNID KSVFNDKYEKLIYKIFLWISQDFKDPYTGAQISVNEIVNNKVEIDHI IPYSLCFDDSSANKV LVHKQSNQEKSNSLPYEYIKQGHSGWNWDEFTKYVKRVFVNNVDSILSKKERLKKSENLLTA SYDGYDKLGFLARNLNDTRYATILFRDQLNNYAEHHLIDNKKMFKVIAMNGAVTSFIRKNMS YDNKLRLKDRSDFSHHAYDAAIIALFSNKTKTLYNLIDPSLNGIISKRSEGYWVIEDRYTGE IKELKKEDWTSIKNNVQARKIAKEIEEYLIDLDDEVFFSRKTKRKTNRQLYNETIYGIATKT DEDGITNYYKKEKFSILDDKDIYLRLLREREKFVINQSNPEVIDQIIEIIESYGKENNIPSR DEAINIKYTKNKINYNLYLKQYMRSLTKSLDQFSEEFINQMIANKTFVLYNPTKNTTRKIKF LRLVNDVKINDIRKNQVINKFNGKNNEPKAFYENINSLGAIVFKNSANNFKTLSINTQIAIF GDKNWDIEDFKTYNMEKIEKYKEIYGIDKTYNFHSFIFPGTILLDKQNKEFYYISSIQTVRD IIEIKFLNKIEFKDENKNQDTSKTPKRLMFGIKSIMNNYEQVDISPFGINKKIFE SEQ ID NO: 359 MGYRIGLDVGITSTGYAVLKTDKNGLPYKILTLDSVIYPRAENPQTGASLAEPRRIKRGLRR RTRRTKFRKQRTQQLFIHSGLLSKPEIEQILATPQAKYSVYELRVAGLDRRLTNSELFRVLY FFIGHRGFKSNRKAELNPENEADKKQMGQLLNSIEEIRKAIAEKGYRTVGELYLKDPKYNDH KRNKGYIDGYLSTPNRQMLVDEIKQILDKQRELGNEKLTDEFYATYLLGDENRAGIFQAQRD FDEGPGAGPYAGDQIKKMVGKDIFEPTEDRAAKATYTFQYFNLLQKMTSLNYQNTTGDTWHT LNGLDRQAIIDAVFAKAEKPTKTYKPTDFGELRKLLKLPDDARFNLVNYGSLQTQKEIETVE KKTRFVDFKAYHDLVKVLPEEMWQSRQLLDHIGTALTLYSSDKRRRRYFAEELNLPAELIEK LLPLNFSKFGHLSIKSMQNIIPYLEMGQVYSEATTNTGYDFRKKQISKDTIREEITNPVVRR AVTKTIKIVEQIIRRYGKPDGINIELARELGRNFKERGDIQKRQDKNRQTNDKIAAELTELG IPVNGQ IIRYKLHKEQNGVDPYTGDQIPFERAFSEGYEVDHI IPYSISWDDSYTNKVLTSA KCNREKGNRIPMVYLANNEQRLNALTNIADNIIRNSRKRQKLLKQKLSDEELKDWKQRNIND TRFITRVLYNYFRQAIEFNPELEKKQRVLPLNGEVTSKIRSRWGFLKVREDGDLHHAIDATV IAAITPKFIQQVTKYSQHQEVKNNQALWHDAEIKDAEYAAEAQRMDADLFNKIFNGFPLPWP EFLDELLARISDNPVEMMKSRSWNTYTPIEIAKLKPVFVVRLANHKISGPAHLDTIRSAKLF DEKGIVLSRVSITKLKINKKGQVATGDGIYDPENSNNGDKWYSAIRQALEAHNGSGELAFP DGYLEYVDHGTKKLVRKVRVAKKVSLPVRLKNKAAADNGSMVRIDVFNTGKKFVFVPIYIKD TVEQVLPNKAIARGKSLWYQITESDQFCFSLYPGDMVHIESKTGIKPKYSNKENNTSWPIK NFYGYFDGADIATASILVRAHDSSYTARSIGIAGLLKFEKYQVDYFGRYHKVHEKKRQLFVK RDE
SEQ ID NO: 360
MQKNINTKQNHIYIKQAQKIKEKLGDKPYRIGLDLGVGSIGFAIVSMEENDGNVLLPKEIIM VGSRIFKASAGAADRKLSRGQRNNHRHTRERMRYLWKVLAEQKLALPVPADLDRKENSSEGE TSAKRFLGDVLQKDIYELRVKSLDERLSLQELGYVLYHIAGHRGSSAIRTFENDSEEAQKEN TENKKIAGNIKRLMAKKNYRTYGEYLYKEFFENKEKHKREKISNAANNHKFSPTRDLVIKEA EAILKKQAGKDGFHKELTEEYIEKLTKAIGYESEKLIPESGFCPYLKDEKRLPASHKLNEER RLWETLNNARYSDPIVDIVTGEITGYYEKQFTKEQKQKLFDYLLTGSELTPAQTKKLLGLKN TNFEDIILQGRDKKAQKIKGYKLIKLESMPFWARLSEAQQDSFLYDWNSCPDEKLLTEKLSN EYHLTEEEIDNAFNEIVLSSSYAPLGKSAMLIILEKIKNDLSYTEAVEEALKEGKLTKEKQA IKDRLPYYGAVLQESTQKI IAKGFSPQFKDKGYKTPHTNKYELEYGRIANPWHQTLNELRK LVNEIIDILGKKPCEIGLETARELKKSAEDRSKLSREQNDNESNRNRIYEIYIRPQQQVIIT RRENPRNYILKFELLEEQKSQCPFCGGQISPNDIINNQADIEHLFPIAESEDNGRNNLVISH SACNADKAKRSPWAAFASAAKDSKYDYNRILSNVKENIPHKAWRFNQGAFEKFIENKPMAAR FKTDNSYISKVAHKYLACLFEKPNIICVKGSLTAQLRMAWGLQGLMIPFAKQLITEKESESF NKDVNSNKKIRLDNRHHALDAIVIAYASRGYGNLLNKMAGKDYKINYSERNWLSKILLPPNN IVWENIDADLESFESSVKTALKNAFISVKHDHSDNGELVKGTMYKIFYSERGYTLTTYKKLS ALKLTDPQKKKTPKDFLETALLKFKGRESEMKNEKIKSAIENNKRLFDVIQDNLEKAKKLLE EENEKSKAEGKKEKNINDASIYQKAISLSGDKYVQLSKKEPGKFFAISKPTPTTTGYGYDTG DSLCVDLYYDNKGKLCGEI IRKIDAQQKNPLKYKEQGFTLFERIYGGDILEVDFDIHSDKNS FRNNTGSAPENRVFIKVGTFTEITNN IQIWFGNI IKSTGGQDDSFTINSMQQYNPRKLILS SCGFIKYRSPILKNKEG
SEQ ID NO: 361
MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMAR RLARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTP LEWSAVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFE KESGHIRNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSG DAVQKMLGHCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPY RKSKLTYAQARKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPL NLSPELQDEIGTAFSLFKTDEDITGRLKDRIQPEILEALLKHISFDKFVQISLKALRRIVPL MEQGKRYDEACAEIYGDHYGKKNTEEKIYLPPIPADEIRNPWLRALSQARKVINGWRRYG SPARIHIETAREVGKSFKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRL YEQQHGKCLYSGKEINLGRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPY EYFNGKDNSREWQEFKARVETSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVA DRMRLTGKGKKRVFASNGQITNLLRGFWGLRKVRAENDRHHALDAWVACSTVAMQQKITRF VRYKEMNAFDGKTIDKETGEVLHQKTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKL RTLLAEKLSSRPEAVHEYVTPLFVSRAPNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLK LKDLEKMVNREREPKLYEALKARLEAHKDDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQK TGVWVRNHNGIADNATMVRVDVFEKGDKYYLVPIYSWQVAKGILPDRAWQGKDEEDWQLID DSFNFKFSLHPNDLVEVITKKARMFGYFASCHRGTGNINIRIHDLDHKIGKNGILEGIGVKT ALSFQKYQIDELGKEIRPCRLKKRPPVR
SEQ ID NO: 362
MQTTNLSYILGLDLGIASVGWAVVEINENEDPIGLIDVGVRIFERAEVPKTGESLALSRRLA RSTRRLIRRRAHRLLLAKRFLKREGILSTIDLEKGLPNQAWELRVAGLERRLSAIEWGAVLL HLIKHRGYLSKRKNESQTNNKELGALLSGVAQNHQLLQSDDYRTPAELALKKFAKEEGHIRN QRGAYTHTFNRLDLLAELNLLFAQQHQFGNPHCKEHIQQYMTELLMWQKPALSGEAILKMLG KCTHEKNEFKAAKHTYSAERFVWLTKLNNLRILEDGAERALNEEERQLLINHPYEKSKLTYA QVRKLLGLSEQAIFKHLRYSKENAESATFMELKAWHAIRKALENQGLKDTWQDLAKKPDLLD EIGTAFSLYKTDEDIQQYLTNKVPNSVINALLVSLNFDKFIELSLKSLRKILPLMEQGKRYD QACREIYGHHYGEANQKTSQLLPAIPAQEIRNPWLRTLSQARKVINAIIRQYGSPARVHIE TGRELGKSFKERREIQKQQEDNRTKRESAVQKFKELFSDFSSEPKSKDILKFRLYEQQHGKC LYSGKEINIHRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLASENQNKGNQTPYEWLQGKIN SERWKNFVALVLGSQCSAAKKQRLLTQVIDDNKFIDRNLNDTRYIARFLSNYIQENLLLVGK NKKNVFTPNGQITALLRSRWGLIKARENNNRHHALDAIVVACATPSMQQKITRFIRFKEVHP YKIENRYEMVDQESGEIISPHFPEPWAYFRQEVNIRVFDNHPDTVLKEMLPDRPQANHQFVQ PLFVSRAPTRKMSGQGHMETIKSAKRLAEGISVLRIPLTQLKPNLLENMVNKEREPALYAGL KARLAEFNQDPAKAFATPFYKQGGQQVKAIRVEQVQKSGVLVRENNGVADNASIVRTDVFIK NNKFFLVPIYTWQVAKGILPNKAIVAHKNEDEWEEMDEGAKFKFSLFPNDLVELKTKKEYFF GYYIGLDRATGNISLKEHDGEISKGKDGVYRVGVKLALSFEKYQVDELGKNRQICRPQQRQP VR
SEQ ID NO: 363
MGIRFAFDLGTNSIGWAVWRTGPGVFGEDTAASLDGSGVLIFKDGRNPKDGQSLATMRRVPR QSRKRRDRFVLRRRDLLAALRKAGLFPVDVEEGRRLAATDPYHLRAKALDESLTPHEMGRVI FHLNQRRGFRSNRKADRQDREKGKIAEGSKRLAETLAATNCRTLGEFLWSRHRGTPRTRSPT RIRMEGEGAKALYAFYPTREMVRAEFERLWTAQSRFAPDLLTPERHEEIAGILFRQRDLAPP KIGCCTFEPSERRLPRALPSVEARGIYERLAHLRITTGPVSDRGLTRPERDVLASALLAGKS LTFKAVRKTLKILPHALVNFEEAGEKGLDGALTAKLLSKPDHYGAAWHGLSFAEKDTFVGKL LDEADEERLIRRLVTENRLSEDAARRCASIPLADGYGRLGRTANTEILAALVEETDETGTW TYAEAVRRAGERTGRNWHHSDERDGVILDRLPYYGEILQRHWPGSGEPEEKNEAARWGRLA NPTVHIGLNQLRKWNRLIAAHGRPDQIWELARELKLNREQKERLDRENRKNREENERRTA ILAEHGQRDTAENKIRLRLFEEQARANAGIALCPYTGRAIGIAELFTSEVEIDHILPVSLTL DDSLANRVLCRREANREKRRQTPFQAFGATPAWNDIVARAAKLPPNKRWRFDPAALERFERE GGFLGRQLNETKYLSRLAKIYLGKICDPDRVYVTPGTLTGLLRARWGLNSILSDSNFKNRSD HRHHAVDAWIGVLTRGMIQRIAHDAARAEDQDLDRVFRDVPVPFEDFRDHVRERVSTITVA VKPEHGKGGALHEDTSYGLVPDTDPNAALGNLWRKPIRSLTAGEVDRVRDRALRARLGALA APFRDESGRVRDAKGLAQALEAFGAENGIRRVRILKPDASWTIADRRTGVPYRAVAPGENH HVDIVQMRDGSWRGFAASVFEVNRPGWRPEWEVKKLGGKLVMRLHKGDMVELSDKDGQRRVK WQQIEISANRVRLSPHNDGGKLQDRHADADDPFRWDLATIPLLKDRGCVAVRVDPIGVVTL RRSNV SEQ ID NO: 364
MMEVFMGRLVLGLDIGITSVGFGIIDLDESEIVDYGVRLFKEGTAAENETRRTKRGGRRLKR RRVTRREDMLHLLKQAGIISTSFHPLNNPYDVRVKGLNERLNGEELATALLHLCKHRGSSVE TIEDDEAKAKEAGETKKVLSMNDQLLKSGKYVCEIQKERLRTNGHIRGHENNFKTRAYVDEA FQILSHQDLSNELKSAIITIISRKRMYYDGPGGPLSPTPYGRYTYFGQKEPIDLIEKMRGKC SLFPNEPRAPKLAYSAELFNLLNDLNNLSIEGEKLTSEQKAMILKIVHEKGKITPKQLAKEV GVSLEQIRGFRIDTKGSPLLSELTGYKMIREVLEKSNDEHLEDHVFYDEIAEILTKTKDIEG RKKQISELSSDLNEESVHQLAGLTKFTAYHSLSFKALRLINEEMLKTELNQMQSITLFGLKQ NNELSVKGMK IQADDTAILSPVAKRAQRETFKWNRLREIYGEFDSIWEMAREKNSEEQR KAIRERQKFFEMRNKQVADIIGDDRKINAKLREKLVLYQEQDGKTAYSLEPIDLKLLIDDPN AYEVDHI IPISISLDDSITNKVLVTHRENQEKGNLTPISAFVKGRFTKGSLAQYKAYCLKLK EKNIKTNKGYRKKVEQYLLNENDIYKYDIQKEFINRNLVDTSYASRVVLNTLTTYFKQNEIP TKVFTVKGSLTNAFRRKINLKKDRDEDYGHHAIDALIIASMPKMRLLSTIFSRYKIEDIYDE STGEVFSSGDDSMYYDDRYFAFIASLKAIKVRKFSHKIDTKPNRSVADETIYSTRVIDGKEK WKKYKDIYDPKFTALAEDILNNAYQEKYLMALHDPQTFDQIVKWNYYFEEMSKSEKYFTK DKKGRIKISGMNPLSLYRDEHGMLKKYSKKGDGPAITQMKYFDGVLGNHIDISAHYQVRDKK WLQQISPYRTDFYYSKENGYKFVTIRYKDVRWSEKKKKYVIDQQDYAMKKAEKKIDDTYEF QFSMHRDELIGITKAEGEALIYPDETWHNFNFFFHAGETPEILKFTATNNDKSNKIEVKPIH CYCKMRLMPTISKKIVRIDKYATDWGNLYKVKKNTLKFEFD
SEQ ID NO: 365
MKKILGVDLGITSFGYAILQETGKDLYRCLDNSWMRNNPYDEKSGESSQSIRSTQKSMRRL IEKRKKRIRCVAQTMERYGILDYSETMKINDPKNNPIKNRWQLRAVDAWKRPLSPQELFAIF AHMAKHRGYKSIATEDLIYELELELGLNDPEKESEKKADERRQVYNALRHLEELRKKYGGET IAQTIHRAVEAGDLRSYRNHDDYEKMIRREDIEEEIEKVLLRQAELGALGLPEEQVSELIDE LKACITDQEMPTIDESLFGKCTFYKDELAAPAYSYLYDLYRLYKKLADLNIDGYEVTQEDRE KVIEWVEKKIAQGKNLKKITHKDLRKILGLAPEQKIFGVEDERIVKGKKEPRTFVPFFFLAD IAKFKELFASIQKHPDALQIFRELAEILQRSKTPQEALDRLRALMAGKGIDTDDRELLELFK NKRSGTRELSHRYILEALPLFLEGYDEKEVQRILGFDDREDYSRYPKSLRHLHLREGNLFEK EENPINNHAVKSLASWALGLIADLSWRYGPFDEIILETTRDALPEKIRKEIDKAMREREKAL DKI IGKYKKEFPSIDKRLARKIQLWERQKGLDLYSGKVINLSQLLDGSADIEHIVPQSLGGL STDYNTIVTLKSVNAAKGNRLPGDWLAGNPDYRERIGMLSEKGLIDWKKRKNLLAQSLDEIY TENTHSKGIRATSYLEALVAQVLKRYYPFPDPELRKNGIGVRMIPGKVTSKTRSLLGIKSKS RETNFHHAEDALILSTLTRGWQNRLHRMLRDNYGKSEAELKELWKKYMPHIEGLTLADYIDE AFRRFMSKGEESLFYRDMFDTIRSISYWVDKKPLSASSHKETVYSSRHEVPTLRKNILEAFD SLNVIKDRHKLTTEEFMKRYDKEIRQKLWLHRIGNTNDESYRAVEERATQIAQILTRYQLMD AQNDKEIDEKFQQALKELITSPIEVTGKLLRKMRFVYDKLNAMQIDRGLVETDKNMLGIHIS KGPNEKLIFRRMDVNNAHELQKERSGILCYLNEMLFIFNKKGLIHYGCLRSYLEKGQGSKYI ALFNPRFPANPKAQPSKFTSDSKIKQVGIGSATGI IKAHLDLDGHVRSYEVFGTLPEGSIEW FKEESGYGRVEDDPHH
SEQ ID NO: 366
MRPIEPWILGLDIGTDSLGWAVFSCEEKGPPTAKELLGGGVRLFDSGRDAKDHTSRQAERGA FRRARRQTRTWPWRRDRLIALFQAAGLTPPAAETRQIALALRREAVSRPLAPDALWAALLHL AHHRGFRSNRIDKRERAAAKALAKAKPAKATAKATAPAKEADDEAGFWEGAEAALRQRMAAS GAPTVGALLADDLDRGQPVRMRYNQSDRDGVVAPTRALIAEELAEIVARQSSAYPGLDWPAV TRLVLDQRPLRSKGAGPCAFLPGEDRALRALPTVQDFIIRQTLANLRLPSTSADEPRPLTDE EHAKALALLSTARFVEWPALRRALGLKRGVKFTAETERNGAKQAARGTAGNLTEAILAPLIP GWSGWDLDRKDRVFSDLWAARQDRSALLALIGDPRGPTRVTEDETAEAVADAIQIVLPTGRA SLSAKAARAIAQAMAPGIGYDEAVTLALGLHHSHRPRQERLARLPYYAAALPDVGLDGDPVG PPPAEDDGAAAEAYYGRIGNISVHIALNETRKIVNALLHRHGPILRLVMVETTRELKAGADE RKRMIAEQAERERE AEIDVELRKSDRWMA ARERRQRVRLARRQNNLCPYTSTPIGHADLL GDAYDIDHVIPLARGGRDSLDNMVLCQSDANKTKGDKTPWEAFHDKPGWIAQRDDFLARLDP QTAKALAWRFADDAGERVARKSAEDEDQGFLPRQLTDTGYIARVALRYLSLVTNEPNAVVAT NGRLTGLLRLAWDITPGPAPRDLLPTPRDALRDDTAARRFLDGLTPPPLAKAVEGAVQARLA ALGRSRVADAGLADALGLTLASLGGGGKNRADHRHHFIDAAMIAVTTRGLINQINQASGAGR ILDLRKWPRTNFEPPYPTFRAEVMKQWDHIHPSIRPAHRDGGSLHAATVFGVRNRPDARVLV QRKPVEKLFLDANAKPLPADKIAEIIDGFASPRMAKRFKALLARYQAAHPEVPPALAALAVA RDPAFGPRGMTANTVIAGRSDGDGEDAGLITPFRANPKAAVRTMGNAVYEVWEIQVKGRPRW THRVLTRFDRTQPAPPPPPENARLVMRLRRGDLVYWPLESGDRLFLVKKMAVDGRLALWPAR LATGKATALYAQLSCPNINLNGDQGYCVQSAEGIRKEKIRTTSCTALGRLRLSKKAT
SEQ ID NO: 367
MKYTLGLDVGIASVGWAVIDKDNNKIIDLGVRCFDKAEESKTGESLATARRIARGMRRRISR RSQRLRLVKKLFVQYEIIKDSSEFNRIFDTSRDGWKDPWELRYNALSRILKPYELVQVLTHI TKRRGFKSNRKEDLSTTKEGWITSIKNNSEMLRTKNYRTIGEMIFMETPENSNKRNKVDEY IHTIAREDLLNEIKYIFSIQRKLGSPFVTEKLEHDFLNIWEFQRPFASGDSILSKVGKCTLL KEELRAPTSCYTSEYFGLLQSINNLVLVEDNNTLTLNNDQRAKIIEYAHFKNEIKYSEIRKL LDIEPEILFKAHNLTHKNPSGNNESKKFYEMKSYHKLKSTLPTDIWGKLHSNKESLDNLFYC LTVYKNDNEIKDYLQANNLDYLIEYIAKLPTFNKFKHLSLVAMKRIIPFMEKGYKYSDACNM AELDFTGSSKLEKCNKLTVEPIIENVTNPWIRALTQARKVINAIIQKYGLPYMVNIELARE AGMTRQDRDNLKKEHENNRKAREKISDLIRQNGRVASGLDILKWRLWEDQGGRCAYSGKPIP VCDLLNDSLTQIDHIYPYSRSMDDSYMNKVLVLTDENQNKRSYTPYEVWGSTEKWEDFEARI YSMHLPQSKEKRLLNRNFITKDLDSFISRNLNDTRYISRFLKNYIESYLQFSNDSPKSCWC VNGQCTAQLRSRWGLNKNREESDLHHALDAAVIACADRKIIKEITNYYNERENHNYKVKYPL PWHSFRQDLMETLAGVFISRAPRRKITGPAHDETIRSPKHFNKGLTSVKIPLTTVTLEKLET MVKNTKGGISDKAVYNVLKNRLIEHNNKPLKAFAEKIYKPLKNGTNGAIIRSIRVETPSYTG VFRNEGKGISDNSLMVRVDVFKKKDKYYLVPIYVAHMIKKELPSKAIVPLKPESQWELIDST HEFLFSLYQNDYLVIKTKKGITEGYYRSCHRGTGSLSLMPHFANNKNVKIDIGVRTAISIEK YNVDILGNKSIVKGEPRRGMEKYNSFKSN
SEQ ID NO: 368
MIRTLGIDIGIASIGWAVIEGEYTDKGLENKEIVASGVRVFTKAENPKNKESLALPRTLARS ARRRNARKKGRIQQVKHYLSKALGLDLECFVQGEKLATLFQTSKDFLSPWELRERALYRVLD KEELARVILHIAKRRGYDDITYGVEDNDSGKIKKAIAENSKRIKEEQCKTIGEMMYKLYFQK SLNVRNKKESYNRCVGRSELREELKTIFQIQQELKSPWVNEELIYKLLGNPDAQSKQEREGL IFYQRPLKGFGDKIGKCSHIKKGENSPYRACKHAPSAEEFVALTKSINFLKNLTNRHGLCFS QEDMCVYLGKILQEAQKNEKGLTYSKLKLLLDLPSDFEFLGLDYSGKNPEKAVFLSLPSTFK LNKITQDRKTQDKIANILGANKDWEAILKELESLQLSKEQIQTIKDAKLNFSKHINLSLEAL YHLLPLMREGKRYDEGVEILQERGIFSKPQPKNRQLLPPLSELAKEESYFDIPNPVLRRALS EFRKWNALLEKYGGFHYFHIELTRDVCKAKSARMQLEKINKKNKSENDAASQLLEVLGLPN TYNNRLKCKLWKQQEEYCLYSGEKITIDHLKDQRALQIDHAFPLSRSLDDSQSNKVLCLTSS NQEKSNKTPYEWLGSDEKKWDMYVGRVYSSNFSPSKKRKLTQKNFKERNEEDFLARNLVDTG YIGRVTKEYIKHSLSFLPLPDGKKEHIRIISGSMTSTMRSFWGVQEKNRDHHLHHAQDAIII ACIEPSMIQKYTTYLKDKETHRLKSHQKAQILREGDHKLSLRWPMSNFKDKIQESIQNI IPS HHVSHKVTGELHQETVRTKEFYYQAFGGEEGVKKALKFGKIREINQGIVDNGAMVRVDIFKS KDKGKFYAVPIYTYDFAIGKLPNKAIVQGKKNGIIKDWLEMDENYEFCFSLFKNDCIKIQTK EMQEAVLAIYKSTNSAKATIELEHLSKYALKNEDEEKMFTDTDKEKNKTMTRESCGIQGLKV FQKVKLSVLGEVLEHKPRNRQNIALKTTPKHV SEQ ID NO: 369 MKYSIGLDIGIASVGWSVINKDKERIEDMGVRIFQKAENPKDGSSLASSRREKRGSRRRNRR KKHRLDRIKNILCESGLVKKNEIEKIYKNAYLKSPWELRAKSLEAKISNKEIAQILLHIAKR RGFKSFRKTDRNADDTGKLLSGIQENKKIMEEKGYLTIGDMVAKDPKFNTHVRNKAGSYLFS FSRKLLEDEVRKIQAKQKELGNTHFTDDVLEKYIEVFNSQRNFDEGPSKPSPYYSEIGQIAK MIGNCTFESSEKRTAKNTWSGERFVFLQKLNNFRIVGLSGKRPLTEEERDIVEKEVYLKKEV RYEKLRKILYLKEEERFGDLNYSKDEKQDKKTEKTKFISLIGNYTIKKLNLSEKLKSEIEED KSKLDKI IEILTFNKSDKTIESNLKKLELSREDIEILLSEEFSGTLNLSLKAIKKILPYLEK GLSYNEACEKADYDYKNNGIKFKRGELLPWDKDLIANPWLRAISQTRKVVNAI IRKYGTP HTIHVEVARDLAKSYDDRQTIIKENKKRELENEKTKKFISEEFGIKNVKGKLLLKYRLYQEQ EGRCAYSRKELSLSEVILDESMTDIDHIIPYSRSMDDSYSNKVLVLSGENRKKSNLLPKEYF DRQGRDWDTFVLNVKAMKIHPRKKSNLLKEKFTREDNKDWKSRALNDTRYISRFVANYLENA LEYRDDSPKKRVFMIPGQLTAQLRARWRLNKVRENGDLHHALDAAWAVTDQKAINNISNIS RYKELKNCKDVIPSIEYHADEETGEVYFEEVKDTRFPMPWSGFDLELQKRLESENPREEFYN LLSDKRYLGWFNYEEGFIEKLRPVFVSRMPNRGVKGQAHQETIRSSKKISNQIAVSKKPLNS IKLKDLEKMQGRDTDRKLYEALKNRLEEYDDKPEKAFAEPFYKPTNSGKRGPLVRGIKVEEK QNVGVYVNGGQASNGSMVRIDVFRKNGKFYTVPIYVHQTLLKELPNRAINGKPYKDWDLIDG SFEFLYSFYPNDLIEIEFGKSKSIKNDNKLTKTEIPEVNLSEVLGYYRGMDTSTGAATIDTQ DGKIQMRIGIKTVK IKKYQVDVLGNVYKVKREKRQTF SEQ ID NO: 370
MSKKVSRRYEEQAQEICQRLGSRPYSIGLDLGVGSIGVAVAAYDPIKKQPSDLVFVSSRIFI PSTGAAERRQKRGQRNSLRHRANRLKFLWKLLAERNLMLSYSEQDVPDPARLRFEDAWRAN PYELRLKGLNEQLTLSELGYALYHIANHRGSSSVRTFLDEEKSSDDKKLEEQQAMTEQLAKE KGISTFIEVLTAFNTNGLIGYRNSESVKSKGVPVPTRDI ISNEIDVLLQTQKQFYQEILSDE YCDRIVSAILFENEKIVPEAGCCPYFPDEKKLPRCHFLNEERRLWEAINNARIKMPMQEGAA KRYQSASFSDEQRHILFHIARSGTDITPKLVQKEFPALKTSIIVLQGKEKAIQKIAGFRFRR LEEKSFWKRLSEEQKDDFFSAWTNTPDDKRLSKYLMKHLLLTENEWDALKTVSLIGDYGPI GKTATQLLMKHLEDGLTYTEALERGMETGEFQELSVWEQQSLLPYYGQILTGSTQALMGKYW HSAFKEKRDSEGFFKPNTNSDEEKYGRIANPWHQTLNELRKLMNELITILGAKPQEITVEL ARELKVGAEKREDIIKQQTKQEKEAVLAYSKYCEPNNLDKRYIERFRLLEDQAFVCPYCLEH ISVADIAAGRADVDHIFPRDDTADNSYGNKVVAHRQCNDIKGKRTPYAAFSNTSAWGPIMHY LDETPGMWRKRRKFETNEEEYAKYLQSKGFVSRFESDNSYIAKAAKEYLRCLFNPNNVTAVG SLKGMETSILRKAWNLQGIDDLLGSRHWSKDADTSPTMRKNRDDNRHHGLDAIVALYCSRSL VQMINTMSEQGKRAVEIEAMIPIPGYASEPNLSFEAQRELFRKKILEFMDLHAFVSMKTDND ANGALLKDTVYSILGADTQGEDLVFWKKKIKDIGVKIGDYEEVASAIRGRITDKQPKWYPM EMKDKIEQLQSKNEAALQKYKESLVQAAAVLEESNRKLIESGKKPIQLSEKTISKKALELVG GYYYLISNNKRTKTFWKEPSNEVKGFAFDTGSNLCLDFYHDAQGKLCGEI IRKIQAMNPSY KPAYMKQGYSLYVRLYQGDVCELRASDLTEAESNLAKTTHVRLPNAKPGRTFVII ITFTEMG SGYQIYFSNLAKSKKGQDTSFTLTTIKNYDVRKVQLSSAGLVRYVSPLLVDKIEKDEVALCG E
SEQ ID NO: 371
MNQKFILGLDIGITSVGYGLIDYETKNIIDAGVRLFPEANVENNEGRRSKRGSRRLKRRRIH RLERVKKLLEDYNLLDQSQIPQSTNPYAIRVKGLSEALSKDELVIALLHIAKRRGIHKIDVI DSNDDVGNELSTKEQLNKNSKLLKDKFVCQIQLERMNEGQVRGEKNRFKTADIIKEIIQLLN VQKNFHQLDENFINKYIELVEMRREYFEGPGKGSPYGWEGDPKAWYETLMGHCTYFPDELRS VKYAYSADLFNALNDLNNLVIQRDGLSKLEYHEKYHIIENVFKQKKKPTLKQIANEINVNPE DIKGYRITKSGKPQFTEFKLYHDLKSVLFDQSILENEDVLDQIAEILTIYQDKDSIKSKLTE LDILLNEEDKENIAQLTGYTGTHRLSLKCIRLVLEEQWYSSRNQMEIFTHLNIKPKKINLTA ANKIPKAMIDEFILSPWKRTFGQAINLINKIIEKYGVPEDII IELARENNSKDKQKFINEM QKKNENTRKRINEIIGKYGNQNAKRLVEKIRLHDEQEGKCLYSLESIPLEDLLNNPNHYEVD HIIPRSVSFDNSYHNKVLVKQSENSKKSNLTPYQYFNSGKSKLSYNQFKQHILNLSKSQDRI SKKKKEYLLEERDINKFEVQKEFINRNLVDTRYATRELTNYLKAYFSANNMNVKVKTINGSF TDYLRKVWKFKKERNHGYKHHAEDALI IANADFLFKENKKLKAVNSVLEKPEIESKQLDIQV DSEDNYSEMFI IPKQVQDIKDFRNFKYSHRVDKKPNRQLINDTLYSTRKKDNSTYIVQTIKD IYAKDNTTLKKQFDKSPEKFLMYQHDPRTFEKLEVIMKQYANEKNPLAKYHEETGEYLTKYS KKNNGPIVKSLKYIGNKLGSHLDVTHQFKSSTKKLVKLSIKPYRFDVYLTDKGYKFITISYL DVLKKDNYYYIPEQKYDKLKLGKAIDKNAKFIASFYKNDLIKLDGEIYKIIGVNSDTRNMIE LDLPDIRYKEYCELNNIKGEPRIKKTIGKKVNSIEKLTTDVLGNVFTNTQYTKPQLLFKRGN SEQ ID NO: 372
MIMKLEKWRLGLDLGTNSIGWSVFSLDKDNSVQDLIDMGVRIFSDGRDPKTKEPLAVARRTA RSQRKLIYRRKLRRKQVFKFLQEQGLFPKTKEECMTLKSLNPYELRIKALDEKLEPYELGRA LFNLAVRRGFKSNRKDGSREEVSEKKSPDEIKTQADMQTHLEKAIKENGCRTITEFLYKNQG ENGGIRFAPGRMTYYPTRKMYEEEFNLIRSKQEKYYPQVDWDDIYKAIFYQRPLKPQQRGYC IYENDKERTFKAMPCSQKLRILQDIGNLAYYEGGSKKRVELNDNQDKVLYELLNSKDKVTFD QMRKALCLADSNSFNLEENRDFLIGNPTAVKMRSKNRFGKLWDEIPLEEQDLIIETIITADE DDAVYEVIKKYDLTQEQRDFIVKNTILQSGTSMLCKEVSEKLVKRLEEIADLKYHEAVESLG YKFADQTVEKYDLLPYYGKVLPGSTMEIDLSAPETNPEKHYGKISNPTVHVALNQTRWVNA LIKEYGKPSQIAIELSRDLKNNVEKKAEIARKQNQRAKENIAINDTISALYHTAFPGKSFYP NRNDRMKYRLWSELGLGNKCIYCGKGISGAELFTKEIEIEHILPFSRTLLDAESNLTVAHSS CNAFKAERSPFEAFGTNPSGYSWQEIIQRANQLKNTSKKNKFSPNAMDSFEKDSSFIARQLS DNQYIAKAALRYLKCLVENPSDVWTTNGSMTKLLRDKWEMDSILCRKFTEKEVALLGLKPEQ IGNYKKNRFDHRHHAIDAVVIGLTDRSMVQKLATKNSHKGNRIEIPEFPILRSDLIEKVKNI WSFKPDHGAEGKLSKETLLGKIKLHGKETFVCRENIVSLSEKNLDDIVDEIKSKVKDYVAK HKGQKIEAVLSDFSKENGIKKVRCVNRVQTPIEITSGKISRYLSPEDYFAAVIWEIPGEKKT FKAQYIRRNEVEKNSKGLNWKPAVLENGKPHPAAKQVCLLHKDDYLEFSDKGKMYFCRIAG YAATNNKLDIRPVYAVSYCADWINSTNETMLTGYWKPTPTQNWVSVNVLFDKQKARLVTVSP IGRVFRK SEQ ID NO: 373
MSSKAIDSLEQLDLFKPQEYTLGLDLGIKSIGWAILSGERIANAGVYLFETAEELNSTGNKL ISKAAERGRKRRIRRMLDRKARRGRHIRYLLEREGLPTDELEEWVHQSNRTLWDVRAEAVE RKLTKQELAAVLFHLVRHRGYFPNTKKLPPDDESDSADEEQGKINRATSRLREELKASDCKT IGQFLAQNRDRQRNREGDYSNLMARKLVFEEALQILAFQRKQGHELSKDFEKTYLDVLMGQR SGRSPKLGNCSLIPSELRAPSSAPSTEWFKFLQNLGNLQISNAYREEWSIDAPRRAQIIDAC SQRSTSSYWQIRRDFQIPDEYRFNLVNYERRDPDVDLQEYLQQQERKTLANFRNWKQLEKII GTGHPIQTLDEAARLITLIKDDEKLSDQLADLLPEASDKAITQLCELDFTTAAKISLEAMYR ILPHMNQGMGFFDACQQESLPEIGVPPAGDRVPPFDEMYNPWNRVLSQSRKLINAVIDEYG MPAKIRVELARDLGKGRELRERIKLDQLDKSKQNDQRAEDFRAEFQQAPRGDQSLRYRLWKE QNCTCPYSGRMIPVNSVLSEDTQIDHILPISQSFDNSLSNKVLCFTEENAQKSNRTPFEYLD AADFQRLEAISGNWPEAKRNKLLHKSFGKVAEEWKSRALNDTRYLTSALADHLRHHLPDSKI QTVNGRITGYLRKQWGLEKDRDKHTHHAVDAIWACTTPAIVQQVTLYHQDIRRYKKLGEKR PTPWPETFRQDVLDVEEEIFITRQPKKVSGGIQTKDTLRKHRSKPDRQRVALTKVKLADLER LVEKDASNRNLYEHLKQCLEESGDQPTKAFKAPFYMPSGPEAKQRPILSKVTLLREKPEPPK QLTELSGGRRYDSMAQGRLDIYRYKPGGKRKDEYRWLQRMIDLMRGEENVHVFQKGVPYDQ GPEIEQNYTFLFSLYFDDLVEFQRSADSEVIRGYYRTFNIANGQLKISTYLEGRQDFDFFGA NRLAHFAKVQVNLLGKVIK
SEQ ID NO: 374
MRSLRYRLALDLGSTSLGWALFRLDACNRPTAVIKAGVRIFSDGRNPKDGSSLAVTRRAARA MRRRRDRLLKRKTRMQAKLVEHGFFPADAGKRKALEQLNPYALRAKGLQEALLPGEFARALF HINQRRGFKSNRKTDKKDNDSGVLKKAIGQLRQQMAEQGSRTVGEYLWTRLQQGQGVRARYR EKPYTTEEGKKRIDKSYDLYIDRAMIEQEFDALWAAQAAFNPTLFHEAARADLKDTLLHQRP LRPVKPGRCTLLPEEERAPLALPSTQRFRIHQEVNHLRLLDENLREVALTLAQRDAWTALE TKAKLSFEQIRKLLKLSGSVQFNLEDAKRTELKGNATSAALARKELFGAAWSGFDEALQDEI VWQLVTEEGEGALIAWLQTHTGVDEARAQAIVDVSLPEGYGNLSRKALARIVPALRAAVITY DKAVQAAGFDHHSQLGFEYDASEVEDLVHPETGEIRSVFKQLPYYGKALQRHVAFGSGKPED PDEKRYGKIANPTVHIGLNQVRMWNALIRRYGRPTEWIELARDLKQSREQKVEAQRRQAD NQRRNARIRRSIAEVLGIGEERVRGSDIQKWICWEELSFDAADRRCPYSGVQISAAMLLSDE VEVEHILPFSKTLDDSLNNRTVAMRQANRIKRNRTPWDARAEFEAQGWSYEDILQRAERMPL RKRYRFAPDGYERWLGDDKDFLARALNDTRYLSRVAAEYLRLVCPGTRVIPGQLTALLRGKF GLNDVLGLDGEKNRNDHRHHAVDACVIGVTDQGLMQRFATASAQARGDGLTRLVDGMPMPWP TYRDHVERAVRHIWVSHRPDHGFEGAMMEETSYGIRKDGSIKQRRKADGSAGREISNLIRIH EATQPLRHGVSADGQPLAYKGYVGGSNYCIEITVNDKGKWEGEVISTFRAYGWRAGGMGRL RNPHEGQNGRKLIMRLVIGDSVRLEVDGAERTMRIVKISGSNGQIFMAPIHEANVDARNTDK QDAFTYTSKYAGSLQKAKTRRVTISPIGEVRDPGFKG
SEQ ID NO: 375
MARPAFRAPRREHVNGWTPDPHRISKPFFILVSWHLLSRWIDSSSGCFPGTSRDHTDKFAE WECAVQPYRLSFDLGTNSIGWGLLNLDRQGKPREIRALGSRIFSDGRDPQDKASLAVARRLA RQMRRRRDRYLTRRTRLMGALVRFGLMPADPAARKRLEVAVDPYLARERATRERLEPFEIGR ALFHLNQRRGYKPVRTATKPDEEAGKVKEAVERLEAAIAAAGAPTLGAWFAWRKTRGETLRA RLAGKGKEAAYPFYPARRMLEAEFDTLWAEQARHHPDLLTAEAREILRHRIFHQRPLKPPPV GRCTLYPDDGRAPRALPSAQRLRLFQELASLRVIHLDLSERPLTPAERDRIVAFVQGRPPKA GRKPGKVQKSVPFEKLRGLLELPPGTGFSLESDKRPELLGDETGARIAPAFGPGWTALPLEE QDALVELLLTEAEPERAIAALTARWALDEATAAKLAGATLPDFHGRYGRRAVAELLPVLERE TRGDPDGRVRPIRLDEAVKLLRGGKDHSDFSREGALLDALPYYGAVLERHVAFGTGNPADPE EKRVGRVANPTVHIALNQLRHLVNAILARHGRPEEIVIELARDLKRSAEDRRREDKRQADNQ KRNEERKRLILSLGERPTPRNLLKLRLWEEQGPVENRRCPYSGETISMRMLLSEQVDIDHIL PFSVSLDDSAANKWCLREANRIKRNRSPWEAFGHDSERWAGILARAEALPKNKRWRFAPDA LEKLEGEGGLRARHLNDTRHLSRLAVEYLRCVCPKVRVSPGRLTALLRRRWGIDAILAEADG PPPEVPAETLDPSPAEKNRADHRHHALDAWIGCIDRSMVQRVQLAAASAEREAAARED IR RVLEGFKEEPWDGFRAELERRARTIWSHRPEHGIGGALHKETAYGPVDPPEEGFNLWRKP IDGLSKDEINSVRDPRLRRALIDRLAIRRRDANDPATALAKAAEDLAAQPASRGIRRVRVLK KESNPIRVEHGGNPSGPRSGGPFHKLLLAGEVHHVDVALRADGRRWVGHWVTLFEAHGGRGA DGAAAPPRLGDGERFLMRLHKGDCLKLEHKGRVRVMQWKLEPSSNSWWEPHQVKTDRSK HVKISCDQLRARGARRVTVDPLGRVRVHAPGARVGIGGDAGRTAMEPAEDIS
SEQ ID NO: 376
MKRTSLRAYRLGVDLGANSLGWFWWLDDHGQPEGLGPGGVRIFPDGRNPQSKQSNAAGRRL ARSARRRRDRYLQRRGKLMGLLVKHGLMPADEPARKRLECLDPYGLRAKALDEVLPLHHVGR ALFHLNQRRGLFANRAIEQGDKDASAIKAAAGRLQTSMQACGARTLGEFLNRRHQLRATVRA RSPVGGDVQARYEFYPTRAMVDAEFEAIWAAQAPHHPTMTAEAHDTIREAIFSQRAMKRPSI GKCSLDPATSQDDVDGFRCAWSHPLAQRFRIWQDVRNLAWETGPTSSRLGKEDQDKVARAL LQTDQLSFDEIRGLLGLPSDARFNLESDRRDHLKGDATGAILSARRHFGPAWHDRSLDRQID IVALLESALDEAAIIASLGTTHSLDEAAAQRALSALLPDGYCRLGLRAIKRVLPLMEAGRTY AEAASAAGYDHALLPGGKLSPTGYLPYYGQWLQNDWGSDDERDTNERRWGRLPNPTVHIGI GQLRRWNELIRWHGPPAEITVELTRDLKLSPRRLAELEREQAENQRKNDKRTSLLRKLGLP ASTHNLLKLRLWDEQGDVASECPYTGEAIGLERLVSDDVDIDHLIPFSISWDDSAANKVVCM RYANREKGNRTPFEAFGHRQGRPYDWADIAERAARLPRGKRWRFGPGARAQFEELGDFQARL LNETSWLARVAKQYLAAVTHPHRIHVLPGRLTALLRATWELNDLLPGSDDRAAKSRKDHRHH AIDALVAALTDQALLRRMANAHDDTRRKIEVLLPWPTFRIDLETRLKAMLVSHKPDHGLQAR LHEDTAYGTVEHPETEDGANLVYRKTFVDISEKEIDRIRDRRLRDLVRAHVAGERQQGKTLK AAVLSFAQRRDIAGHPNGIRHVRLTKSIKPDYLVPIRDKAGRIYKSYNAGENAFVDILQAES GRWIARATTVFQANQANESHDAPAAQPIMRVFKGDMLRIDHAGAEKFVKIVRLSPSNNLLYL VEHHQAGVFQTRHDDPEDSFRWLFASFDKLREWNAELVRIDTLGQPWRRKRGLETGSEDATR IGWTRPKKWP
SEQ ID NO: 377
MERIFGFDIGTTSIGFSVIDYSSTQSAGNIQRLGVRIFPEARDPDGTPLNQQRRQKRMMRRQ LRRRRIRRKALNETLHEAGFLPAYGSADWPVVMADEPYELRRRGLEEGLSAYEFGRAIYHLA QHRHFKGRELEESDTPDPDVDDEKEAANERAATLKALKNEQTTLGAWLARRPPSDRKRGIHA HRNWAEEFERLWEVQSKFHPALKSEEMRARISDTIFAQRPVFWRKNTLGECRFMPGEPLCP KGSWLSQQRRMLEKLNNLAIAGGNARPLDAEERDAILSKLQQQASMSWPGVRSALKALYKQR GEPGAEKSLKFNLELGGESKLLGNALEAKLADMFGPDWPAHPRKQEIRHAVHERLWAADYGE TPDKKRVIILSEKDRKAHREAAANSFVADFGITGEQAAQLQALKLPTGWEPYSIPALNLFLA ELEKGERFGALVNGPDWEGWRRTNFPHRNQPTGEILDKLPSPASKEERERISQLRNPTVVRT QNELRKVVNNLIGLYGKPDRIRIEVGRDVGKSKREREEIQSGIRRNEKQRKKATEDLIKNGI ANPSRDDVEKWILWKEGQERCPYTGDQIGFNALFREGRYEVEHIWPRSRSFDNSPRNKTLCR KDVNIEKGNRMPFEAFGHDEDRWSAIQIRLQGMVSAKGGTGMSPGKVKRFLAKTMPEDFAAR QLNDTRYAAKQILAQLKRLWPDMGPEAPVKVEAVTGQVTAQLRKLWTLNNILADDGEKTRAD HRHHAIDALTVACTHPGMTNKLSRYWQLRDDPRAEKPALTPPWDTIRADAEKAVSEIWSHR VRKKVSGPLHKETTYGDTGTDIKTKSGTYRQFVTRKKIESLSKGELDEIRDPRIKEIVAAHV AGRGGDPKKAFPPYPCVSPGGPEIRKVRLTSKQQLNLMAQTGNGYADLGSNHHIAIYRLPDG KADFEIVSLFDASRRLAQRNPIVQRTRADGASFVMSLAAGEAIMIPEGSKKGIWIVQGVWAS GQVVLERDTDADHSTTTRPMPNPILKDDAKKVSIDPIGRVRPSND
SEQ ID NO: 378
MNKRILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEGVKIEKGIESSKAAERSGYKA IRKQYFRRRLRKIQVLKVLVKYHLCPYLSDDDLRQWHLQKQYPKSDELMLWQRTSDEEGKNP YYDRHRCLHEKLDLTVEADRYTLGRALYHLTQRRGFLSNRLDTSADNKEDGWKSGISQLST EMEEAGCEYLGDYFYKLYDAQGNKVRIRQRYTDRNKHYQHEFDAICEKQELSSELIEDLQRA IFFQLPLKSQRHGVGRCTFERGKPRCADSHPDYEEFRMLCFVNNIQVKGPHDLELRPLTYEE REKIEPLFFRKSKPNFDFEDIAKALAGKKNYAWIHDKEERAYKFNYRMTQGVPGCPTIAQLK SIFGDDWKTGIAETYTLIQKKNGSKSLQEMVDDVWNVLYSFSSVEKLKEFAHHKLQLDEESA EKFAKIKLSHSFAALSLKAIRKFLPFLRKGMYYTHASFFANIPTIVGKEIWNKEQNRKYIME NVGELVFNYQPKHREVQGTIEMLIKDFLANNFELPAGATDKLYHPSMIETYPNAQRNEFGIL QLGSPRTNAIRNPMAMRSLHILRRWNQLLKESIIDENTEVHVEYARELNDANKRRAIADRQ KEQDKQHKKYGDEIRKLYKEETGKDIEPTQTDVLKFQLWEEQNHHCLYTGEQIGITDFIGSN PKFDIEHTIPQSVGGDSTQMNLTLCDNRFNREVKKAKLPTELANHEEILTRIEPWKNKYEQL VKERDKQRTFAGMDKAVKDIRIQKRHKLQMEIDYWRGKYERFTMTEVPEGFSRRQGTGIGLI SRYAGLYLKSLFHQADSRNKSNVYWKGVATAEFRKMWGLQSEYEKKCRDNHSHHCMDAITI ACIGKREYDLMAEYYRMEETFKQGRGSKPKFSKPWATFTEDVLNIYKNLLVVHDTPNNMPKH TKKYVQTSIGKVLAQGDTARGSLHLDTYYGAIERDGEIRYWRRPLSSFTKPEELENIVDET VKRTIKEAIADKNFKQAIAEPIYMNEEKGILIKKVRCFAKSVKQPINIRQHRDLSKKEYKQQ YHVMNENNYLLAIYEGLVKNKWREFEIVSYIEAAKYYKRSQDRNIFSSIVPTHSTKYGLPL KTKLLMGQLVLMFEENPDEIQVDNTKDLVKRLYKVVGIEKDGRIKFKYHQEARKEGLPIFST PYKNNDDYAPIFRQSINNINILVDGIDFTIDILGKVTLKE
SEQ ID NO: 379
MNYKMGLDIGIASVGWAVINLDLKRIEDLGVRIFDKAEHPQNGESLALPRRIARSARRRLRR RKHRLERIRRLLVSENVLTKEEMNLLFKQKKQIDVWQLRVDALERKLNNDELARVLLHLAKR RGFKSNRKSERNSKESSEFLKNIEENQSILAQYRSVGEMIVKDSKFAYHKRNKLDSYSNMIA RDDLEREIKLIFEKQREFNNPVCTERLEEKYLNIWSSQRPFASKEDIEKKVGFCTFEPKEKR APKATYTFQSFIVWEHINKLRLVSPDETRALTEIERNLLYKQAFSKNKMTYYDIRKLLNLSD DIHFKGLLYDPKSSLKQIENIRFLELDSYHKIRKCIENVYGKDGIRMFNETDIDTFGYALTI FKDDEDIVAYLQNEYITKNGKRVSNLANKVYDKSLIDELLNLSFSKFAHLSMKAIRNILPYM EQGEIYSKACELAGYNFTGPKKKEKALLLPVIPNIANPVVMRALTQSRKWNAIIKKYGSPV SIHIELARDLSHSFDERKKIQKDQTENRKKNETAIKQLIEYELTKNPTGLDIVKFKLWSEQQ GRCMYSLKPIELERLLEPGYVEVDHILPYSRSLDDSYANKVLVLTKENREKGNHTPVEYLGL GSERWKKFEKFVLANKQFSKKKKQNLLRLRYEETEEKEFKERNLNDTRYISKFFANFIKEHL KFADGDGGQKVYTINGKITAHLRSRWDFNKNREESDLHHAVDAVIVACATQGMIKKITEFYK AREQNKESAKKKEPIFPQPWPHFADELKARLSKFPQESIEAFALGNYDRKKLESLRPVFVSR MPKRSVTGAAHQETLRRCVGIDEQSGKIQTAVKTKLSDIKLDKDGHFPMYQKESDPRTYEAI RQRLLEHNNDPKKAFQEPLYKPKKNGEPGPVIRTVKIIDTKNKWHLDGSKTVAYNSNIVRT DVFEKDGKYYCVPVYTMDIMKGTLPNKAIEANKPYSEWKEMTEEYTFQFSLFPNDLVRIVLP REKTIKTSTNEEIIIKDIFAYYKTIDSATGGLELISHDRNFSLRGVGSKTLKRFEKYQVDVL GNIHKVKGEKRVGLAAPTNQKKGKTVDSLQSVSD
SEQ ID NO: 380
MRRLGLDLGTNSIGWCLLDLGDDGEPVSIFRTGARIFSDGRDPKSLGSLKATRREARLTRRR RDRFIQRQKNLINALVKYGLMPADEIQRQALAYKDPYPIRKKALDEAIDPYEMGRAIFHINQ RRGFKSNRKSADNEAGWKQSIADLEMKLGEAGARTIGEFLADRQATNDTVRARRLSGTNAL YEFYPDRYMLEQEFDTLWAKQAAFNPSLYIEAARERLKEIVFFQRKLKPQEVGRCIFLSDED RISKALPSFQRFRIYQELSNLAWIDHDGVAHRITASLALRDHLFDELEHKKKLTFKAMRAIL RKQGWDYPVGFNLESDNRDHLIGNLTSCIMRDAKKMIGSAWDRLDEEEQDSFILMLQDDQK GDDEVRSILTQQYGLSDDVAEDCLDVRLPDGHGSLSKKAIDRILPVLRDQGLIYYDAVKEAG LGEANLYDPYAALSDKLDYYGKALAGHVMGASGKFEDSDEKRYGTISNPTVHIALNQVRAW NELIRLHGKPDEWIEIGRDLPMGADGKRELERFQKEGRAKNERARDELKKLGHIDSRESRQ KFQLWEQLAKEPVDRCCPFTGKMMSISDLFSDKVEIEHLLPFSLTLDDSMANKTVCFRQANR DKGNRAPFDAFGNSPAGYDWQEILGRSQNLPYAKRWRFLPDAMKRFEADGGFLERQLNDTRY ISRYTTEYISTIIPKNKIWWTGRLTSLLRGFWGLNSILRGHNTDDGTPAKKSRDDHRHHAI DAIWGMTSRGLLQKVSKAARRSEDLDLTRLFEGRIDPWDGFRDEVKKHIDAIIVSHRPRKK SQGALHNDTAYGIVEHAENGASTWHRVPITSLGKQSDIEKVRDPLIKSALLNETAGLSGKS FENAVQKWCADNSIKSLRIVETVSIIPITDKEGVAYKGYKGDGNAYMDIYQDPTSSKWKGEI VSRFDANQKGFIPSWQSQFPTARLIMRLRINDLLKLQDGEIEEIYRVQRLSGSKILMAPHTE ANVDARDRDKNDTFKLTSKSPGKLQSASARKVHISPTGLIREG
SEQ ID NO: 381
MKNILGLDLGLSSIGWSVIRENSEEQELVAMGSRVVSLTAAELSSFTQGNGVSINSQRTQKR TQRKGYDRYQLRRTLLRNKLDTLGMLPDDSLSYLPKLQLWGLRAKAVTQRIELNELGRVLLH LNQKRGYKSIKSDFSGDKKITDYVKTVKTRYDELKEMRLTIGELFFRRLTENAFFRCKEQVY PRQAYVEEFDCIMNCQRKFYPDILTDETIRCIRDEIIYYQRPLKSCKYLVSRCEFEKRFYLN AAGKKTEAGPKVSPRTSPLFQVCRLWESINNIWKDRRNEIVFISAEQRAALFDFLNTHEKL KGSDLLKLLGLSKTYGYRLGEQFKTGIQGNKTRVEIERALGNYPDKKRLLQFNLQEESSSMV NTETGEI IPMISLSFEQEPLYRLWHVLYSIDDREQLQSVLRQKFGIDDDEVLERLSAIDLVK AGFGNKSSKAIRRILPFLQLGMNYAEACEAAGYNHSNNYTKAENEARALLDRLPAIKKNELR QPVVEKILNQMVNWNALMEKYGRFDEIRVELARELKQSKEERSNTYKSINKNQRENEQIAK RIVEYGVPTRSRIQKYKMWEESKHCCIYCGQPVDVGDFLRGFDVEVEHIIPKSLYFDDSFAN KVCSCRSCNKEKNNRTAYDYMKSKGEKALSDYVERVNTMYTNNQISKTKWQNLLTPVDKISI DFIDRQLRESQYIARKAKEILTSICYNVTATSGSVTSFLRHVWGWDTVLHDLNFDRYKKVGL TEVIEVNHRGSVIRREQIKDWSKRFDHRHHAIDALTIACTKQAYIQRLNNLRAEEGPDFNKM SLERYIQSQPHFSVAQVREAVDRILVSFRAGKRAVTPGKRYIRKNRKRISVQSVLIPRGALS EESVYGVIHVWEKDEQGHVIQKQRAVMKYPITSINREMLDKEKWDKRIHRILSGRLAQYND NPKEAFAKPVYIDKECRIPIRTVRCFAKPAINTLVPLKKDDKGNPVAWVNPGNNHHVAIYRD EDGKYKERTVTFWEAVDRCRVGIPAIVTQPDTIWDNILQRNDISENVLESLPDVKWQFVLSL QQNEMFILGMNEEDYRYAMDQQDYALLNKYLYRVQKLSKSDYSFRYHTETSVEDKYDGKPNL KLSMQMGKLKRVSIKSLLGLNPHKVHISVLGEIKEIS
SEQ ID NO: 382
MAEKQHRWGLDIGTNSIGWAVIALIEGRPAGLVATGSRIFSDGRNPKDGSSLAVERRGPRQM RRRRDRYLRRRDRFMQALINVGLMPGDAAARKALVTENPYVLRQRGLDQALTLPEFGRALFH LNQRRGFQSNRKTDRATAKESGKVKNAIAAFRAGMGNARTVGEALARRLEDGRPVRARMVGQ GKDEHYELYIAREWIAQEFDALWASQQRFHAEVLADAARDRLRAILLFQRKLLPVPVGKCFL EPNQPRVAAALPSAQRFRLMQELNHLRVMTLADKRERPLSFQERNDLLAQLVARPKCGFDML RKIVFGANKEAYRFTIESERRKELKGCDTAAKLAKVNALGTRWQALSLDEQDRLVCLLLDGE NDAVLADALREHYGLTDAQIDTLLGLSFEDGHMRLGRSALLRVLDALESGRDEQGLPLSYDK AWAAGYPAHTADLENGERDALPYYGELLWRYTQDAPTAKNDAERKFGKIANPTVHIGLNQL RKLVNALIQRYGKPAQIWELARNLKAGLEEKERIKKQQTANLERNERIRQKLQDAGVPDNR ENRLRMRLFEELGQGNGLGTPCIYSGRQISLQRLFSNDVQVDHILPFSKTLDDSFANKVLAQ HDANRYKGNRGPFEAFGANRDGYAWDDIRARAAVLPRNKRNRFAETAMQDWLHNETDFLARQ LTDTAYLSRVARQYLTAICSKDDVYVSPGRLTAMLRAKWGLNRVLDGVMEEQGRPAVKNRDD HRHHAIDAWIGATDRAMLQQVATLAARAREQDAERLIGDMPTPWPNFLEDVRAAVARCWS HKPDHGPEGGLHNDTAYGIVAGPFEDGRYRVRHRVSLFDLKPGDLSNVRCDAPLQAELEPIF EQDDARAREVALTALAERYRQRKVWLEELMSVLPIRPRGEDGKTLPDSAPYKAYKGDSNYCY ELFINERGRWDGELISTFRANQAAYRRFRNDPARFRRYTAGGRPLLMRLCINDYIAVGTAAE RTIFRWKMSENKITLAEHFEGGTLKQRDADKDDPFKYLTKSPGALRDLGARRIFVDLIGRV LDPGIKGD
SEQ ID NO: 383
MIERILGVDLGISSLGWAIVEYDKDDEAANRIIDCGVRLFTAAETPKKKESPNKARREARGI RRVLNRRRVRMNMIKKLFLRAGLIQDVDLDGEGGMFYSKANRADVWELRHDGLYRLLKGDEL ARVLIHIAKHRGYKFIGDDEADEESGKVKKAGWLRQNFEAAGCRTVGEWLWRERGANGKKR NKHGDYEISIHRDLLVEEVEAIFVAQQEMRSTIATDALKAAYREIAFFVRPMQRIEKMVGHC TYFPEERRAPKSAPTAEKFIAISKFFSTVIIDNEGWEQKIIERKTLEELLDFAVSREKVEFR HLRKFLDLSDNEIFKGLHYKGKPKTAKKREATLFDPNEPTELEFDKVEAEKKAWISLRGAAK LREALGNEFYGRFVALGKHADEATKILTYYKDEGQKRRELTKLPLEAEMVERLVKIGFSDFL KLSLKAIRDILPAMESGARYDEAVLMLGVPHKEKSAILPPLNKTDIDILNPTVIRAFAQFRK VANALVRKYGAFDRVHFELAREINTKGEIEDIKESQRKNEKERKEAADWIAETSFQVPLTRK NILKKRLYIQQDGRCAYTGDVIELERLFDEGYCEIDHILPRSRSADDSFANKVLCLARANQQ KTDRTPYEWFGHDAARWNAFETRTSAPSNRVRTGKGKIDRLLKKNFDENSEMAFKDRNLNDT RYMARAIKTYCEQYWVFKNSHTKAPVQVRSGKLTSVLRYQWGLESKDRESHTHHAVDAI IIA FSTQGMVQKLSEYYRFKETHREKERPKLAVPLANFRDAVEEATRIENTETVKEGVEVKRLLI SRPPRARVTGQAHEQTAKPYPRIKQVKNKKKWRLAPIDEEKFESFKADRVASANQKNFYETS TIPRVDVYHKKGKFHLVPIYLHEMVLNELPNLSLGTNPEAMDENFFKFSIFKDDLISIQTQG TPKKPAKIIMGYFKNMHGANMVLSSINNSPCEGFTCTPVSMDKKHKDKCKLCPEENRIAGRC LQGFLDYWSQEGLRPPRKEFECDQGVKFALDVKKYQIDPLGYYYEVKQEKRLGTIPQMRSAK KLVKK
SEQ ID NO: 384
MNNSIKSKPEVTIGLDLGVGSVGWAIVDNETNIIHHLGSRLFSQAKTAEDRRSFRGVRRLIR RRKYKLKRFVNLIWKYNSYFGFKNKEDILNNYQEQQKLHNTVLNLKSEALNAKIDPKALSWI LHDYLKNRGHFYEDNRDFNVYPTKELAKYFDKYGYYKGI IDSKEDNDNKLEEELTKYKFSNK HWLEEVKKVLSNQTGLPEKFKEEYESLFSYVRNYSEGPGSINSVSPYGIYHLDEKEGKVVQK YNNIWDKTIGKCNIFPDEYRAPKNSPIAMIFNEINELSTIRSYSIYLTGWFINQEFKKAYLN KLLDLLIKTNGEKPIDARQFKKLREETIAESIGKETLKDVENEEKLEKEDHKWKLKGLKLNT NGKIQYNDLSSLAKFVHKLKQHLKLDFLLEDQYATLDKINFLQSLFVYLGKHLRYSNRVDSA NLKEFSDSNKLFERILQKQKDGLFKLFEQTDKDDEKILAQTHSLSTKAMLLAITRMTNLDND EDNQKNNDKGWNFEAIKNFDQKFIDITKKNNNLSLKQNKRYLDDRFINDAILSPGVKRILRE ATKVFNAILKQFSEEYDVTKWIELARELSEEKELENTKNYKKLIKKNGDKISEGLKALGIS EDEIKDILKSPTKSYKFLLWLQQDHIDPYSLKEIAFDDIFTKTEKFEIDHI IPYSISFDDSS SNKLLVLAESNQAKSNQTPYEFISSGNAGIKWEDYEAYCRKFKDGDSSLLDSTQRSKKFAKM MKTDTSSKYDIGFLARNLNDTRYATIVFRDALEDYANNHLVEDKPMFKWCINGSVTSFLRK NFDDSSYAKKDRDKNIHHAVDASIISIFSNETKTLFNQLTQFADYKLFKNTDGSWKKIDPKT GWTEVTDENWKQIRVRNQVSEIAKVIEKYIQDSNIERKARYSRKIENKTNISLFNDTVYSA KKVGYEDQIKRKNLKTLDIHESAKENKNSKVKRQFVYRKLVNVSLLNNDKLADLFAEKEDIL MYRANPWVINLAEQIFNEYTENKKIKSQNVFEKYMLDLTKEFPEKFSEFLVKSMLRNKTAII YDDKKNIVHRIKRLKMLSSELKENKLSNVIIRSKNQSGTKLSYQDTINSLALMIMRSIDPTA KKQYIRVPLNTLNLHLGDHDFDLHNMDAYLKKPKFVKYLKANEIGDEYKPWRVLTSGTLLIH KKDKKLMYISSFQNLNDVIEIKNLIETEYKENDDSDSKKKKKANRFLMTLSTILNDYILLDA KDNFDILGLSKNRIDEILNSKLGLDKIVK
SEQ ID NO: 385
MGGSEVGTVPVTWRLGVDVGERSIGLAAVSYEEDKPKEILAAVSWIHDGGVGDERSGASRLA LRGMARRARRLRRFRRARLRDLDMLLSELGWTPLPDKNVSPVDAWLARKRLAEEYWDETER RRLLGYAVSHMARHRGWRNPWTTIKDLKNLPQPSDSWERTRESLEARYSVSLEPGTVGQWAG YLLQRAPGIRLNPTQQSAGRRAELSNATAFETRLRQEDVLWELRCIADVQGLPEDWSNVID AVFCQKRPSVPAERIGRDPLDPSQLRASRACLEFQEYRIVAAVANLRIRDGSGSRPLSLEER NAVIEALLAQTERSLTWSDIALEILKLPNESDLTSVPEEDGPSSLAYSQFAPFDETSARIAE FIAKNRRKIPTFAQWWQEQDRTSRSDLVAALADNSIAGEEEQELLVHLPDAELEALEGLALP SGRVAYSRLTLSGLTRVMRDDGVDVHNARKTCFGVDDNWRPPLPALHEATGHPWDRNLAIL RKFLSSATMRWGPPQSIWELARGASESRERQAEEEAARRAHRKANDRIRAELRASGLSDPS PADLVRARLLELYDCHCMYCGAPISWENSELDHIVPRTDGGSNRHENLAITCGACNKEKGRR PFASWAETSNRVQLRDVIDRVQKLKYSGNMYWTRDEFSRYKKSWARLKRRTSDPEVIQSIE STGYAAVALRDRLLSYGEKNGVAQVAVFRGGVTAEARRWLDISIERLFSRVAIFAQSTSTKR LDRRHHAVDAVVLTTLTPGVAKTLADARSRRVSAEFWRRPSDVNRHSTEEPQSPAYRQWKES CSGLGDLLISTAARDSIAVAAPLRLRPTGALHEETLRAFSEHTVGAAWKGAELRRIVEPEVY AAFLALTDPGGRFLKVSPSEDVLPADENRHIVLSDRVLGPRDRVKLFPDDRGSIRVRGGAAY IASFHHARVFRWGSSHSPSFALLRVSLADLAVAGLLRDGVDVFTAELPPWTPAWRYASIALV KAVESGDAKQVGWLVPGDELDFGPEGVTTAAGDLSMFLKYFPERHWVVTGFEDDKRINLKPA FLSAEQAEVLRTERSDRPDTLTEAGEILAQFFPRCWRATVAKVLCHPGLTVIRRTALGQPRW RRGHLPYSWRPWSADPWSGGTP
SEQ ID NO: 386
MHNKKNITIGFDLGIASIGWAIIDSTTSKILDWGTRTFEERKTANERRAFRSTRRNIRRKAY RNQRFINLILKYKDLFELKNISDIQRANKKDTENYEKIISFFTEIYKKCAAKHSNILEVKVK ALDSKIEKLDLIWILHDYLENRGFFYDLEEENVADKYEGIEHPSILLYDFFKKNGFFKSNSS IPKDLGGYSFSNLQWVNEIKKLFEVQEINPEFSEKFLNLFTSVRDYAKGPGSEHSASEYGIF QKDEKGKVFKKYDNIWDKTIGKCSFFVEENRSPVNYPSYEIFNLLNQLINLSTDLKTTNKKI WQLSSNDRNELLDELLKVKEKAKIISISLKKNEIKKIILKDFGFEKSDIDDQDTIEGRKIIK EEPTTKLEVTKHLLATIYSHSSDSNWININNILEFLPYLDAICIILDREKSRGQDEVLKKLT EKNIFEVLKIDREKQLDFVKSIFSNTKFNFKKIGNFSLKAIREFLPKMFEQNKNSEYLKWKD EEIRRKWEEQKSKLGKTDKKTKYLNPRIFQDEIISPGTKNTFEQAVLVLNQIIKKYSKENII DAI IIESPREKNDKKTIEEIKKRNKKGKGKTLEKLFQILNLENKGYKLSDLETKPAKLLDRL RFYHQQDGIDLYTLDKINIDQLINGSQKYEIEHIIPYSMSYDNSQANKILTEKAENLKKGKL IASEYIKRNGDEFYNKYYEKAKELFINKYKKNKKLDSYVDLDEDSAKNRFRFLTLQDYDEFQ VEFLARNLNDTRYSTKLFYHALVEHFENNEFFTYIDENSSKHKVKISTIKGHVTKYFRAKPV QKNNGPNENLNNNKPEKIEKNRENNEHHAVDAAIVAIIGNKNPQIANLLTLADNKTDKKFLL HDENYKENIETGELVKIPKFEVDKLAKVEDLKKIIQEKYEEAKKHTAIKFSRKTRTILNGGL SDETLYGFKYDEKEDKYFKIIKKKLVTSKNEELKKYFENPFGKKADGKSEYTVLMAQSHLSE FNKLKEIFEKYNGFSNKTGNAFVEYMNDLALKEPTLKAEIESAKSVEKLLYYNFKPSDQFTY HDNINNKSFKRFYKNIRIIEYKSIPIKFKILSKHDGGKSFKDTLFSLYSLVYKVYENGKESY KSIPVTSQMRNFGIDEFDFLDENLYNKEKLDIYKSDFAKPIPVNCKPVFVLKKGSILKKKSL DIDDFKETKETEEGNYYFISTISKRFNRDTAYGLKPLKLSWKPVAEPSTNPIFKEYIPIHL DELGNEYPVKIKEHTDDEKLMCTIK
Nucleic Acids Encoding Cas9 Molecules
Nucleic acids encoding the Cas9 molecules or Cas9 polypeptides, e.g., an eaCas9 molecule or eaCas9 polypeptide are provided herein.
Exemplary nucleic acids encoding Cas9 molecules are described in Cong et al. , SCIENCE 2013, 399(6121):819-823; Wang et al, CELL 2013, 153(4):910-918; Mali et al,
SCIENCE 2013, 399(6121):823-826; Jinek et al, SCIENCE 2012, 337(6096):816-821. Another exemplary nucleic acid encoding a Cas9 molecule or Cas9 polypeptide is shown in black in Fig. 8.
In an embodiment, a nucleic acid encoding a Cas9 molecule or Cas9 polypeptide can be a synthetic nucleic acid sequence. For example, the synthetic nucleic acid molecule can be chemically modified, e.g., as described in Section VIII. In an embodiment, the Cas9 mRNA has one or more (e.g., all of the following properties: it is capped, polyadenylated, substituted with 5-methylcytidine and/or pseudouridine.
In addition, or alternatively, the synthetic nucleic acid sequence can be codon optimized, e.g., at least one non-common codon or less-common codon has been replaced by a common codon. For example, the synthetic nucleic acid can direct the synthesis of an optimized messenger mRNA, e.g., optimized for expression in a mammalian expression system, e.g., described herein.
In addition, or alternatively, a nucleic acid encoding a Cas9 molecule or Cas9 polypeptide may comprise a nuclear localization sequence (NLS). Nuclear localization sequences are known in the art.
Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of S. pyogenes.
ATGGATAAAA AGTACAGCAT CGGGCTGGAC ATCGGTACAA ACTCAGTGGG GTGGGCCGTG ATTACGGACG AGTACAAGGT ACCCTCCAAA AAATTTAAAG TGCTGGGTAA CACGGACAGA CACTCTATAA AGAAAAATCT TATTGGAGCC TTGCTGTTCG ACTCAGGCGA GACAGCCGAA GCCACAAGGT TGAAGCGGAC CGCCAGGAGG CGGTATACCA GGAGAAAGAA CCGCATATGC TACCTGCAAG AAATCTTCAG TAACGAGATG GCAAAGGTTG ACGATAGCTT TTTCCATCGC CTGGAAGAAT CCTTTCTTGT TGAGGAAGAC AAGAAGCACG AACGGCACCC CATCTTTGGC AATATTGTCG ACGAAGTGGC ATATCACGAA AAGTACCCGA CTATCTACCA CCTCAGGAAG AAGCTGGTGG ACTCTACCGA TAAGGCGGAC CTCAGACTTA TTTATTTGGC ACTCGCCCAC ATGATTAAAT TTAGAGGACA TTTCTTGATC GAGGGCGACC TGAACCCGGA CAACAGTGAC GTCGATAAGC TGTTCATCCA ACTTGTGCAG ACCTACAATC AACTGTTCGA AGAAAACCCT ATAAATGCTT CAGGAGTCGA CGCTAAAGCA ATCCTGTCCG CGCGCCTCTC AAAATCTAGA AGACTTGAGA ATCTGATTGC TCAGTTGCCC GGGGAAAAGA AAAATGGATT GTTTGGCAAC CTGATCGCCC TCAGTCTCGG ACTGACCCCA AATTTCAAAA GTAACTTCGA CCTGGCCGAA GACGCTAAGC TCCAGCTGTC CAAGGACACA TACGATGACG ACCTCGACAA TCTGCTGGCC CAGATTGGGG ATCAGTACGC CGATCTCTTT TTGGCAGCAA AGAACCTGTC CGACGCCATC CTGTTGAGCG ATATCTTGAG AGTGAACACC GAAATTACTA AAGCACCCCT TAGCGCATCT ATGATCAAGC GGTACGACGA GCATCATCAG GATCTGACCC TGCTGAAGGC TCTTGTGAGG CAACAGCTCC CCGAAAAATA CAAGGAAATC TTCTTTGACC AG AG C AAAAA CGGCTACGCT GGCTATATAG ATGGTGGGGC CAGTCAGGAG GAATTCTATA AATTCATCAA GCCCATTCTC GAGAAAATGG ACGGCACAGA GGAGTTGCTG GTCAAACTTA ACAGGGAGGA CCTGCTGCGG AAGCAGCGGA CCTTTGACAA CGGGTCTATC CCCCACCAGA TTCATCTGGG CGAACTGCAC GCAATCCTGA GGAGGCAGGA GGATTTTTAT CCTTTTCTTA AAGATAACCG CGAGAAAATA GAAAAGATTC TTACATTCAG GATCCCGTAC TACGTGGGAC CTCTCGCCCG GGGCAATTCA CGGTTTGCCT GGATGACAAG GAAGTCAGAG GAGACTATTA CACCTTGGAA CTTCGAAGAA GTGGTGGACA AGGGTGCATC TGCCCAGTCT TTCATCGAGC GGATGACAAA TTTTGACAAG AACCTCCCTA ATGAGAAGGT GCTGCCCAAA CATTCTCTGC TCTACGAGTA CTTTACCGTC TACAATGAAC TGACTAAAGT CAAGTACGTC ACCGAGGGAA TGAGGAAGCC GGCATTCCTT AGTGGAGAAC AGAAGAAGGC GATTGTAGAC CTGTTGTTCA AGACCAACAG GAAGGTGACT GTGAAGCAAC TTAAAGAAGA CTACTTTAAG AAGATCGAAT GTTTTGACAG TGTGGAAATT TCAGGGGTTG AAGACCGCTT CAATGCGTCA TTGGGGACTT AC CAT GAT CT TCTCAAGATC ATAAAGGACA AAGACTTCCT GGACAACGAA GAAAATGAGG ATATTCTCGA AGACATCGTC CTCACCCTGA CCCTGTTCGA AGACAGGGAA ATGATAGAAG AGCGCTTGAA AACCTATGCC CACCTCTTCG ACGATAAAGT TAT GAAG C AG CTGAAGCGCA GGAGATACAC AGGATGGGGA AGATTGTCAA GGAAGCTGAT CAATGGAATT AGGGATAAAC AGAGTGGCAA GACCATACTG GATTTCCTCA AATCTGATGG CTTCGCCAAT AGGAACTTCA TGCAACTGAT TCACGATGAC TCTCTTACCT TCAAGGAGGA CATTCAAAAG GCTCAGGTGA GCGGGCAGGG AGACTCCCTT CATGAACACA TCGCGAATTT GGCAGGTTCC CCCGCTATTA AAAAGGGCAT CCTTCAAACT GTCAAGGTGG TGGATGAATT GGTCAAGGTA ATGGGCAGAC ATAAGCCAGA AAATATTGTG ATCGAGATGG CCCGCGAAAA CCAGACCACA CAGAAGGGCC AGAAAAATAG TAGAGAGCGG ATGAAGAGGA TCGAGGAGGG CATCAAAGAG CTGGGATCTC AGATTCTCAA AGAACACCCC GTAGAAAACA CACAGCTGCA GAACG AAAAA TTGTACTTGT ACTATCTGCA GAACGGCAGA GACATGTACG TCGACCAAGA AC TT GAT ATT AATAGACTGT CCGACTATGA CGTAGACCAT ATCGTGCCCC AGTCCTTCCT GAAGGACGAC TCCATTGATA ACAAAGTCTT GACAAGAAGC GACAAGAACA GGGGTAAAAG TGATAATGTG CCTAGCGAGG AGGTGGTGAA AAAAAT GAAG AACTACTGGC GACAGCTGCT TAATGCAAAG CTCATTACAC AACGGAAGTT CGATAATCTG ACGAAAGCAG AGAGAGGTGG CTTGTCTGAG TTGGACAAGG CAGGGTTTAT TAAGCGGCAG CTGGTGGAAA CTAGGCAGAT CACAAAGCAC GTGGCGCAGA
TTTTGGACAG CCGGATGAAC ACAAAATACG ACGAAAATGA TAAACTGATA CGAGAGGTCA AAGTTATCAC GCTGAAAAGC AAGCTGGTGT CCGATTTTCG GAAAGACTTC CAGTTCTACA AAGTTCGCGA GATTAATAAC TACCATCATG CTCACGATGC GTACCTGAAC GCTGTTGTCG GGACCGCCTT GATAAAGAAG TACCCAAAGC TGGAATCCGA GTTCGTATAC GGGGATTACA AAGTGTACGA TGTGAGGAAA ATGATAGCCA AGTCCGAGCA GGAGATTGGA AAGGCCACAG CTAAGTACTT CTTTTATTCT AACATCATGA ATTTTTTTAA GACGGAAATT ACCCTGGCCA ACGGAGAGAT CAGAAAGCGG CCCCTTATAG AGACAAATGG TGAAACAGGT GAAATCGTCT GGGATAAGGG CAGGGATTTC GCTACTGTGA GGAAGGTGCT GAGTATGCCA CAGGTAAATA TCGTGAAAAA AACCGAAGTA CAGACCGGAG GATTTTCCAA GGAAAGCATT TTGCCTAAAA GAAACTCAGA CAAGCTCATC GCCCGCAAGA AAGATTGGGA CCCTAAGAAA TACGGGGGAT TTGACTCACC CACCGTAGCC TATTCTGTGC TGGTGGTAGC TAAGGTGGAA AAAGGAAAGT CTAAGAAGCT GAAGTCCGTG AAGGAACTCT TGGGAATCAC TATCATGGAA AGATCATCCT TTGAAAAGAA CCCTATCGAT TTCCTGGAGG CTAAGGGTTA CAAGGAGGTC AAGAAAGACC TCATCATTAA ACTGCCAAAA TACTCTCTCT TCGAGCTGGA AAATGGCAGG AAGAGAATGT TGGCCAGCGC CGGAGAGCTG CAAAAGGGAA ACGAGCTTGC TCTGCCCTCC AAATATGTTA ATTTTCTCTA TCTCGCTTCC CACTATGAAA AGCTGAAAGG GTCTCCCGAA GATAACGAGC AGAAGCAGCT GTTCGTCGAA CAGCACAAGC ACTATCTGGA TGAAATAATC GAACAAATAA GCGAGTTCAG CAAAAGGGTT ATCCTGGCGG ATGCTAATTT GGACAAAGTA CTGTCTGCTT ATAACAAGCA CCGGGATAAG CCTATTAGGG AACAAGCCGA GAATATAATT CACCTCTTTA CACTCACGAA TCTCGGAGCC CCCGCCGCCT TCAAATACTT TGATACGACT ATCGACCGGA AACGGTATAC CAGTACCAAA GAGGTCCTCG ATGCCACCCT CATCCACCAG TCAATTACTG GCCTGTACGA AACACGGATC GACCTCTCTC AACTGGGCGG CGACTAG
(SEQ ID NO: 22)
Provided below is the corresponding amino acid sequence of a S. pyogenes Cas9 molecule.
MDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEAT RLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVD EVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFI QLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGL TPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNT EITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEF YKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLK DNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMT NFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRK VTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIV LTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDF LKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKW DELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQL QNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSD NVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKH VAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAV VGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLAN GEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNS DKLIARKKDWDPKKYGGFDSPTVAYSVLWAKVEKGKSKKLKSVKELLGITIMERSSFEKNP IDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLAS HYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPI REQAENI IHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQ LGGD*
(SEQ ID NO: 23)
Provided below is an exemplary codon optimized nucleic acid sequence encoding a Cas9 molecule of N. meningitidis.
ATGGCCGCCTTCAAGCCCAACCCCATCAACTACATCCTGGGCCTGGACATCGGCATCGCCAG CGTGGGCTGGGCCATGGTGGAGATCGACGAGGACGAGAACCCCATCTGCCTGATCGACCTGG GTGTGCGCGTGTTCGAGCGCGCTGAGGTGCCCAAGACTGGTGACAGTCTGGCTATGGCTCGC CGGCTTGCTCGCTCTGTTCGGCGCCTTACTCGCCGGCGCGCTCACCGCCTTCTGCGCGCTCG CCGCCTGCTGAAGCGCGAGGGTGTGCTGCAGGCTGCCGACTTCGACGAGAACGGCCTGATCA AGAGCCTGCCCAACACTCCTTGGCAGCTGCGCGCTGCCGCTCTGGACCGCAAGCTGACTCCT CTGGAGTGGAGCGCCGTGCTGCTGCACCTGATCAAGCACCGCGGCTACCTGAGCCAGCGCAA GAACGAGGGCGAGACCGCCGACAAGGAGCTGGGTGCTCTGCTGAAGGGCGTGGCCGACAACG CCCACGCCCTGCAGACTGGTGACTTCCGCACTCCTGCTGAGCTGGCCCTGAACAAGTTCGAG AAGGAGAGCGGCCACATCCGCAACCAGCGCGGCGACTACAGCCACACCTTCAGCCGCAAGGA CCTGCAGGCCGAGCTGATCCTGCTGTTCGAGAAGCAGAAGGAGTTCGGCAACCCCCACGTGA GCGGCGGCCTGAAGGAGGGCATCGAGACCCTGCTGATGACCCAGCGCCCCGCCCTGAGCGGC GACGCCGTGCAGAAGATGCTGGGCCACTGCACCTTCGAGCCAGCCGAGCCCAAGGCCGCCAA GAACACCTACACCGCCGAGCGCTTCATCTGGCTGACCAAGCTGAACAACCTGCGCATCCTGG AGCAGGGCAGCGAGCGCCCCCTGACCGACACCGAGCGCGCCACCCTGATGGACGAGCCCTAC CGCAAGAGCAAGCTGACCTACGCCCAGGCCCGCAAGCTGCTGGGTCTGGAGGACACCGCCTT CTTCAAGGGCCTGCGCTACGGCAAGGACAACGCCGAGGCCAGCACCCTGATGGAGATGAAGG CCTACCACGCCATCAGCCGCGCCCTGGAGAAGGAGGGCCTGAAGGACAAGAAGAGTCCTCTG AACCTGAGCCCCGAGCTGCAGGACGAGATCGGCACCGCCTTCAGCCTGTTCAAGACCGACGA GGACATCACCGGCCGCCTGAAGGACCGCATCCAGCCCGAGATCCTGGAGGCCCTGCTGAAGC ACATCAGCTTCGACAAGTTCGTGCAGATCAGCCTGAAGGCCCTGCGCCGCATCGTGCCCCTG ATGGAGCAGGGCAAGCGCTACGACGAGGCCTGCGCCGAGATCTACGGCGACCACTACGGCAA GAAGAACACCGAGGAGAAGATCTACCTGCCTCCTATCCCCGCCGACGAGATCCGCAACCCCG TGGTGCTGCGCGCCCTGAGCCAGGCCCGCAAGGTGATCAACGGCGTGGTGCGCCGCTACGGC AGCCCCGCCCGCATCCACATCGAGACCGCCCGCGAGGTGGGCAAGAGCTTCAAGGACCGCAA GGAGATCGAGAAGCGCCAGGAGGAGAACCGCAAGGACCGCGAGAAGGCCGCCGCCAAGTTCC GCGAGTACTTCCCCAACTTCGTGGGCGAGCCCAAGAGCAAGGACATCCTGAAGCTGCGCCTG TACGAGCAGCAGCACGGCAAGTGCCTGTACAGCGGCAAGGAGATCAACCTGGGCCGCCTGAA CGAGAAGGGCTACGTGGAGATCGACCACGCCCTGCCCTTCAGCCGCACCTGGGACGACAGCT TCAACAACAAGGTGCTGGTGCTGGGCAGCGAGAACCAGAACAAGGGCAACCAGACCCCCTAC GAGTACTTCAACGGCAAGGACAACAGCCGCGAGTGGCAGGAGTTCAAGGCCCGCGTGGAGAC CAGCCGCTTCCCCCGCAGCAAGAAGCAGCGCATCCTGCTGCAGAAGTTCGACGAGGACGGCT TCAAGGAGCGCAACCTGAACGACACCCGCTACGTGAACCGCTTCCTGTGCCAGTTCGTGGCC GACCGCATGCGCCTGACCGGCAAGGGCAAGAAGCGCGTGTTCGCCAGCAACGGCCAGATCAC CAACCTGCTGCGCGGCTTCTGGGGCCTGCGCAAGGTGCGCGCCGAGAACGACCGCCACCACG CCCTGGACGCCGTGGTGGTGGCCTGCAGCACCGTGGCCATGCAGCAGAAGATCACCCGCTTC GTGCGCTACAAGGAGATGAACGCCTTCGACGGTAAAACCATCGACAAGGAGACCGGCGAGGT GCTGCACCAGAAGACCCACTTCCCCCAGCCCTGGGAGTTCTTCGCCCAGGAGGTGATGATCC GCGTGTTCGGCAAGCCCGACGGCAAGCCCGAGTTCGAGGAGGCCGACACCCCCGAGAAGCTG CGCACCCTGCTGGCCGAGAAGCTGAGCAGCCGCCCTGAGGCCGTGCACGAGTACGTGACTCC TCTGTTCGTGAGCCGCGCCCCCAACCGCAAGATGAGCGGTCAGGGTCACATGGAGACCGTGA AGAGCGCCAAGCGCCTGGACGAGGGCGTGAGCGTGCTGCGCGTGCCCCTGACCCAGCTGAAG CTGAAGGACCTGGAGAAGATGGTGAACCGCGAGCGCGAGCCCAAGCTGTACGAGGCCCTGAA GGCCCGCCTGGAGGCCCACAAGGACGACCCCGCCAAGGCCTTCGCCGAGCCCTTCTACAAGT ACGACAAGGCCGGCAACCGCACCCAGCAGGTGAAGGCCGTGCGCGTGGAGCAGGTGCAGAAG ACCGGCGTGTGGGTGCGCAACCACAACGGCATCGCCGACAACGCCACCATGGTGCGCGTGGA CGTGTTCGAGAAGGGCGACAAGTACTACCTGGTGCCCATCTACAGCTGGCAGGTGGCCAAGG GCATCCTGCCCGACCGCGCCGTGGTGCAGGGCAAGGACGAGGAGGACTGGCAGCTGATCGAC GACAGCTTCAACTTCAAGTTCAGCCTGCACCCCAACGACCTGGTGGAGGTGATCACCAAGAA GGCCCGCATGTTCGGCTACTTCGCCAGCTGCCACCGCGGCACCGGCAACATCAACATCCGCA TCCACGACCTGGACCACAAGATCGGCAAGAACGGCATCCTGGAGGGCATCGGCGTGAAGACC GCCCTGAGCTTCCAGAAGTACCAGATCGACGAGCTGGGCAAGGAGATCCGCCCCTGCCGCCT GAAGAAGCGCCCTCCTGTGCGCTAA
(SEQ ID NO: 24)
Provided below is the corresponding amino acid sequence of a N. meningitidis Cas9 molecule.
MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVRVFERAEVPKTGDSLAMAR RLARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTP LEWSAVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHALQTGDFRTPAELALNKFE KESGHIRNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSG DAVQKMLGHCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPY RKSKLTYAQARKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPL NLSPELQDEIGTAFSLFKTDEDITGRLKDRIQPEILEALLKHISFDKFVQISLKALRRIVPL MEQGKRYDEACAEIYGDHYGKKNTEEKIYLPPIPADEIRNPWLRALSQARKVINGWRRYG SPARIHIETAREVGKSFKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRL YEQQHGKCLYSGKEINLGRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPY EYFNGKDNSREWQEFKARVETSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVA DRMRLTGKGKKRVFASNGQITNLLRGFWGLRKVRAENDRHHALDAWVACSTVAMQQKITRF VRYKEMNAFDGKTIDKETGEVLHQKTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKL RTLLAEKLSSRPEAVHEYVTPLFVSRAPNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLK LKDLEKMVNREREPKLYEALKARLEAHKDDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQK TGVWVRNHNGIADNATMVRVDVFEKGDKYYLVPIYSWQVAKGILPDRAWQGKDEEDWQLID DSFNFKFSLHPNDLVEVITKKARMFGYFASCHRGTGNINIRIHDLDHKIGKNGILEGIGVKT ALSFQKYQIDELGKEIRPCRLKKRPPVR*
(SEQ ID NO: 25)
Provided below is an amino acid sequence of a S. aureus Cas9 molecule.
MKRNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRH RIQRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEV EEDTGNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKV QKAYHQLDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVK YAYNADLYNALNDLNNLVITRDENEKLEYYEKFQI IENVFKQKKKPTLKQIAKEILVNEEDI KGYRVTSTGKPEFTNLKVYHDIKDITARKEI IENAELLDQIAKILTIYQSSEDIQEELTNLN SELTQEEIEQISNLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQK EIPTTLVDDFILSPVVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMINEMQK RNRQTNERIEEIIRTTGKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHI IPRSVSFDNSFNNKVLVKQEENSKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISK TKKEYLLEERDINRFSVQKDFINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTS FLRRKWKFKKERNKGYKHHAEDALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEI ETEQEYKEIFITPHQIKHIKDFKDYKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLN GLYDKDNDKLKKLINKSPEKLLMYHHDPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKY SKKDNGPVIKKIKYYGNKLNAHLDITDDYPNSRNKWKLSLKPYRFDVYLDNGVYKFVTVKN LDVIKKENYYEVNSKCYEEAKKLKKISNQAEFIASFYNNDLIKINGELYRVIGVNNDLLNRI EVNMIDITYREYLENMNDKRPPRIIKTIASKTQSIKKYSTDILGNLYEVKSKKHPQIIKKG* (SEQ ID NO: 26)
Provided below is an exemplary codon optimized nucleic acid sequence encoding a
Cas9 molecule of S. aureus Cas9.
ATGAAAAGGAACTACATTCTGGGGCTGGACATCGGGATTACAAGCGTGGGGTATGGGATTAT TGACTATGAAACAAGGGACGTGATCGACGCAGGCGTCAGACTGTTCAAGGAGGCCAACGTGG AAAACAATGAGGGACGGAGAAGCAAGAGGGGAGCCAGGCGCCTGAAACGACGGAGAAGGCAC AGAATCCAGAGGGTGAAGAAACTGCTGTTCGATTACAACCTGCTGACCGACCATTCTGAGCT GAGTGGAATTAATCCTTATGAAGCCAGGGTGAAAGGCCTGAGTCAGAAGCTGTCAGAGGAAG AGTTTTCCGCAGCTCTGCTGCACCTGGCTAAGCGCCGAGGAGTGCATAACGTCAATGAGGTG GAAGAGGACACCGGCAACGAGCTGTCTACAAAGGAACAGATCTCACGCAATAGCAAAGCTCT GGAAGAGAAGTATGTCGCAGAGCTGCAGCTGGAACGGCTGAAGAAAGATGGCGAGGTGAGAG GGTCAATTAATAGGTTCAAGACAAGCGACTACGTCAAAGAAGCCAAGCAGCTGCTGAAAGTG CAGAAGGCTTACCACCAGCTGGATCAGAGCTTCATCGATACTTATATCGACCTGCTGGAGAC TCGGAGAACCTACTATGAGGGACCAGGAGAAGGGAGCCCCTTCGGATGGAAAGACATCAAGG AATGGTACGAGATGCTGATGGGACATTGCACCTATTTTCCAGAAGAGCTGAGAAGCGTCAAG TACGCTTATAACGCAGATCTGTACAACGCCCTGAATGACCTGAACAACCTGGTCATCACCAG GGATGAAAACGAGAAACTGGAATACTATGAGAAGTTCCAGATCATCGAAAACGTGTTTAAGC AGAAGAAAAAGCCTACACTGAAACAGATTGCTAAGGAGATCCTGGTCAACGAAGAGGACATC AAGGGCTACCGGGTGACAAGCACTGGAAAACCAGAGTTCACCAATCTGAAAGTGTATCACGA TATTAAGGACATCACAGCACGGAAAGAAATCATTGAGAACGCCGAACTGCTGGATCAGATTG CTAAGATCCTGACTATCTACCAGAGCTCCGAGGACATCCAGGAAGAGCTGACTAACCTGAAC AGCGAGCTGACCCAGGAAGAGATCGAACAGATTAGTAATCTGAAGGGGTACACCGGAACACA CAACCTGTCCCTGAAAGCTATCAATCTGATTCTGGATGAGCTGTGGCATACAAACGACAATC AGATTGCAATCTTTAACCGGCTGAAGCTGGTCCCAAAAAAGGTGGACCTGAGTCAGCAGAAA GAGATCCCAACCACACTGGTGGACGATTTCATTCTGTCACCCGTGGTCAAGCGGAGCTTCAT CCAGAGCATCAAAGTGATCAACGCCATCATCAAGAAGTACGGCCTGCCCAATGATATCATTA TCGAGCTGGCTAGGGAGAAGAACAGCAAGGACGCACAGAAGATGATCAATGAGATGCAGAAA CGAAACCGGCAGACCAATGAACGCATTGAAGAGATTATCCGAACTACCGGGAAAGAGAACGC AAAGTACCTGATTGAAAAAATCAAGCTGCACGATATGCAGGAGGGAAAGTGTCTGTATTCTC TGGAGGCCATCCCCCTGGAGGACCTGCTGAACAATCCATTCAACTACGAGGTCGATCATATT ATCCCCAGAAGCGTGTCCTTCGACAATTCCTTTAACAACAAGGTGCTGGTCAAGCAGGAAGA GAACTCTAAAAAGGGCAATAGGACTCCTTTCCAGTACCTGTCTAGTTCAGATTCCAAGATCT CTTACGAAACCTTTAAAAAGCACATTCTGAATCTGGCCAAAGGAAAGGGCCGCATCAGCAAG ACCAAAAAGGAGTACCTGCTGGAAGAGCGGGACATCAACAGATTCTCCGTCCAGAAGGATTT TATTAACCGGAATCTGGTGGACACAAGATACGCTACTCGCGGCCTGATGAATCTGCTGCGAT CCTATTTCCGGGTGAACAATCTGGATGTGAAAGTCAAGTCCATCAACGGCGGGTTCACATCT TTTCTGAGGCGCAAATGGAAGTTTAAAAAGGAGCGCAACAAAGGGTACAAGCACCATGCCGA AGATGCTCTGATTATCGCAAATGCCGACTTCATCTTTAAGGAGTGGAAAAAGCTGGACAAAG CCAAGAAAGTGATGGAGAACCAGATGTTCGAAGAGAAGCAGGCCGAATCTATGCCCGAAATC GAGACAGAACAGGAGTACAAGGAGATTTTCATCACTCCTCACCAGATCAAGCATATCAAGGA TTTCAAGGACTACAAGTACTCTCACCGGGTGGATAAAAAGCCCAACAGAGAGCTGATCAATG ACACCCTGTATAGTACAAGAAAAGACGATAAGGGGAATACCCTGATTGTGAACAATCTGAAC GGACTGTACGACAAAGATAATGACAAGCTGAAAAAGCTGATCAACAAAAGTCCCGAGAAGCT GCTGATGTACCACCATGATCCTCAGACATATCAGAAACTGAAGCTGATTATGGAGCAGTACG GCGACGAGAAGAACCCACTGTATAAGTACTATGAAGAGACTGGGAACTACCTGACCAAGTAT AGCAAAAAGGATAATGGCCCCGTGATCAAGAAGATCAAGTACTATGGGAACAAGCTGAATGC CCATCTGGACATCACAGACGATTACCCTAACAGTCGCAACAAGGTGGTCAAGCTGTCACTGA AGCCATACAGATTCGATGTCTATCTGGACAACGGCGTGTATAAATTTGTGACTGTCAAGAAT CTGGATGTCATCAAAAAGGAGAACTACTATGAAGTGAATAGCAAGTGCTACGAAGAGGCTAA AAAGCTGAAAAAGATTAGCAACCAGGCAGAGTTCATCGCCTCCTTTTACAACAACGACCTGA TTAAGATCAATGGCGAACTGTATAGGGTCATCGGGGTGAACAATGATCTGCTGAACCGCATT GAAGTGAATATGATTGACATCACTTACCGAGAGTATCTGGAAAACATGAATGATAAGCGCCC CCCTCGAATTATCAAAACAATTGCCTCTAAGACTCAGAGTATCAAAAAGTACTCAACCGACA TTCTGGGAAACCTGTATGAGGTGAAGAGCAAAAAGCACCCTCAGATTATCAAAAAGGGC
(SEQ ID NO: 39 )
If any of the above Cas9 sequences (e.g., a eiCas9) are fused with a transcription repressor at the C-terminus, it is understood that the stop codon will be removed.
Other Cas Molecules and Cas9 Polypeptides
Various types of Cas molecules or Cas9 polypeptides can be used to practice the inventions disclosed herein. In some embodiments, Cas molecules of Type II Cas systems are used. In other embodiments, Cas molecules of other Cas systems are used. For example, Type I or Type III Cas molecules may be used. Exemplary Cas molecules (and Cas systems) are described, e.g., in Haft et al, PLoS COMPUTATIONAL BIOLOGY 2005, 1(6): e60 and Makarova et al, NATURE REVIEW MICROBIOLOGY 2011, 9:467-477, the contents of both references are incorporated herein by reference in their entirety. Exemplary Cas molecules (and Cas systems) are also shown in Table 30.
Table 30: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Haft et fl/. encoded superfamily) of
protein (PDB encoded
accessions)*" protein***
casl • Type I casl 3GOD, 3LFX COG1518 SERP2463, SPyl047
• Type II and 2YZS and ygbT
• Type III
casl • Type I casl 2IVY, 2I8E and COG1343 and SERP2462, SPyl048,
• Type II 3EXC COG3512 SPyl723 (N-terminal
• Type III domain) and ygbF cas3' • Type I** cas3 NA COG1203 APE1232 and ygcB cas3" • Subtype I-A NA NA COG2254 APE1231 and
• Subtype I-B BH0336 cas4 • Subtype I-A cas4 and csal NA COG1468 APE1239 and
• Subtype I-B BH0340
• Subtype I-C
• Subtype I-D Table 30: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Haft et al.% encoded superfamily) of
protein (PDB encoded
accessions)*" protein***
• Subtype II- B
cas5 • Subtype I-A cas5a, cas5d, 3KG4 COG1688 APE1234, BH0337,
• Subtype I-B cas5e, cas5h, (RAMP) devS and ygcl
• Subtype I-C cas5p, cas5t
• Subtype I-E and cmx5
cas6 • Subtype I-A cas6 and cmx6 3I4H COG1583 and PF1131 and slr7014
• Subtype I-B COG5551
• Subtype I-D (RAMP)
• Subtype III- Α· Subtype
III-B
cas6e • Subtype I-E cse3 1WJ9 (RAMP) ygcH
cas6f • Subtype I-F csy4 2XLJ (RAMP) yl727
cas7 • Subtype I-A csa2, csd2, NA COG1857 and devR and ygcJ
• Subtype I-B cse4, csh2, COG3649
• Subtype I-C cspl and cst2 (RAMP)
• Subtype I-E
cas8al • Subtype I- cmxl, cstl, NA BH0338-like LA3191§§ and
A" csx8, csxl3 PG2018§§
and CXXC- cxxc
cas8a2 • Subtype I- csa4 and csx9 NA PH0918 AF0070, AF1873,
A" MJ0385, PF0637,
PH0918 and SSO1401 cas8b • Subtype I- cshl and NA BH0338-like MTH1090 and
B** TM1802 TM1802 cas8c • Subtype I- csdl and csp2 NA BH0338-like BH0338
C**
cas9 • Type II** csnl and csxl2 NA COG3513 FTN_0757 and
SPyl046 cas 10 • Type III** cmr2, csml NA COG1353 MTH326, Rv2823c§§ and csx 11 and TM1794§§ cas 10 d • Subtype I- csc3 NA COG1353 slr7011
D**
csyl • Subtype I- csyl NA yl724-like yl724
F**
csy2 • Subtype I-F csy2 NA (RAMP) yl725
csy3 • Subtype I-F csy3 NA (RAMP) yl726
csel • Subtype I- csel NA YgcL-like ygcL
E**
cse2 • Subtype I-E cse2 2ZCA YgcK-like ygcK
cscl • Subtype I-D cscl NA alrl563-like alr!563
(RAMP) Table 30: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Haft et al.% encoded superfamily) of
protein (PDB encoded
accessions)*" protein***
csc2 • Subtype I-D cscl and csc2 NA COG1337 slr7012
(RAMP)
csa5 • Subtype I-A csa5 NA AF1870 AF1870, MJ0380,
PF0643 and SS01398 csn2 • Subtype II- csn2 NA SPyl049-like SPyl049
A
csm2 • Subtype III- csm2 NA COG1421 MTH1081 and
A" SERP2460 csm3 • Subtype III- csc2 and csm3 NA COG1337 MTH1080 and A (RAMP) SERP2459 csm4 • Subtype III- csm4 NA COG1567 MTH1079 and A (RAMP) SERP2458 csm5 • Subtype III- csm5 NA COG1332 MTH1078 and A (RAMP) SERP2457 csm6 • Subtype III- APE2256 and 2WTE COG1517 APE2256 and
A csm6 SS01445 cmrl • Subtype III- cmrl NA COG1367 PF1130
B (RAMP)
cmr3 • Subtype III- cmr3 NA COG1769 PF1128
B (RAMP)
cmr4 • Subtype Hi- cmr4 NA COG1336 PF1126
fi (RAMP)
cmr5 • Subtype III- cmr5 2ZOP and COG3337 MTH324 and PF1125 B** 20EB
cmr6 • Subtype Hi- cmr6 NA COG1604 PF1124
fi (RAMP)
csbl • Subtype I-U GSU0053 NA (RAMP) Balac_1306 and
GSU0053 csb2 • Subtype I- NA NA (RAMP) Balac_1305 and
GSU0054 csb3 • Subtype I-U NA NA (RAMP) Balac_1303§§ csxl7 • Subtype I-U NA NA NA Btus_2683 csxl4 • Subtype I-U NA NA NA GSU0052 csxlO • Subtype I-U csxlO NA (RAMP) Caur_2274 csxl6 • Subtype III- VVA1548 NA NA VVA1548
U
csaX • Subtype III- csaX NA NA SS01438
U
csx3 • Subtype III- csx3 NA NA AF1864
U
csxl • Subtype III- csa3, csxl, lXMX and 2171 COG1517 and MJ1666, NE0113, U csx2, DXTHG, COG4006 PF1127 and TM1812 Table 30: Cas Systems
Gene System type Name from Structure of Families (and Representatives name* or subtype Haft et al.% encoded superfamily) of
protein (PDB encoded
accessions)*" protein***
NE0113 and
TIG 02710
csxl5 • Unknown NA NA TTE2665 TTE2665 csfl • Type U csfl NA NA AFEJ038 csfl • Type U csfl NA (RAMP) AFEJ039 csfl • Type U csfl NA (RAMP) AFE_1040 csfl • Type U csfl NA NA AFEJ037
IV. Functional Analysis of Candidate Molecules
Candidate Cas9 molecules, candidate gRNA molecules, candidate Cas9
molecule/gRNA molecule complexes, can be evaluated by art-known methods or as described herein. For example, exemplary methods for evaluating the endonuclease activity of Cas9 molecule are described, e.g., in Jinek et ah, SCIENCE 2012, 337(6096):816-821.
Binding and Cleavage Assay: Testing the endonuclease activity of Cas9 molecule The ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in a plasmid cleavage assay. In this assay, synthetic or in vitro- transcribed gRNA molecule is pre-annealed prior to the reaction by heating to 95 °C and slowly cooling down to room temperature. Native or restriction digest- linearized plasmid DNA (300 ng (~8 nM)) is incubated for 60 min at 37°C with purified Cas9 protein molecule (50-500 nM) and gRNA (50-500 nM, 1 : 1) in a Cas9 plasmid cleavage buffer (20 mM HEPES pH 7.5, 150 mM KC1, 0.5 mM DTT, 0.1 mM EDTA) with or without 10 mM MgCl2. The reactions are stopped with 5X DNA loading buffer (30% glycerol, 1.2% SDS, 250 mM EDTA), resolved by a 0.8 or 1% agarose gel electrophoresis and visualized by ethidium bromide staining. The resulting cleavage products indicate whether the Cas9 molecule cleaves both DNA strands, or only one of the two strands. For example, linear DNA products indicate the cleavage of both DNA strands. Nicked open circular products indicate that only one of the two strands is cleaved.
Alternatively, the ability of a Cas9 molecule/gRNA molecule complex to bind to and cleave a target nucleic acid can be evaluated in an oligonucleotide DNA cleavage assay. In this assay, DNA oligonucleotides (10 pmol) are radiolabeled by incubating with 5 units T4 polynucleotide kinase and -3-6 pmol (-20^40 mCi) [γ-32Ρ]-ΑΤΡ in IX T4 polynucleotide kinase reaction buffer at 37°C for 30 min, in a 50 μL· reaction. After heat inactivation (65°C for 20 min), reactions are purified through a column to remove unincorporated label. Duplex substrates (100 nM) are generated by annealing labeled oligonucleotides with equimolar amounts of unlabeled complementary oligonucleotide at 95°C for 3 min, followed by slow cooling to room temperature. For cleavage assays, gRNA molecules are annealed by heating to 95 °C for 30 s, followed by slow cooling to room temperature. Cas9 (500 nM final concentration) is pre-incubated with the annealed gRNA molecules (500 nM) in cleavage assay buffer (20 mM HEPES pH 7.5, 100 mM KCl, 5 mM MgC12, 1 mM DTT, 5% glycerol) in a total volume of 9 μΐ. Reactions are initiated by the addition of 1 μΐ target DNA (10 nM) and incubated for 1 h at 37°C. Reactions are quenched by the addition of 20 μΐ of loading dye (5 mM EDTA, 0.025% SDS, 5% glycerol in formamide) and heated to 95°C for 5 min. Cleavage products are resolved on 12% denaturing polyacrylamide gels containing 7 M urea and visualized by phosphorimaging. The resulting cleavage products indicate that whether the complementary strand, the non-complementary strand, or both, are cleaved.
One or both of these assays can be used to evaluate the suitability of a candidate gRNA molecule or candidate Cas9 molecule.
Binding Assay: Testing the binding of Cas9 molecule to target DNA
Exemplary methods for evaluating the binding of Cas9 molecule to target DNA are described, e.g., in Jinek et al, SCIENCE 2012; 337(6096):816-821.
For example, in an electrophoretic mobility shift assay, target DNA duplexes are formed by mixing of each strand (10 nmol) in deionized water, heating to 95 °C for 3 min and slow cooling to room temperature. All DNAs are purified on 8% native gels containing IX TBE. DNA bands are visualized by UV shadowing, excised, and eluted by soaking gel pieces in DEPC-treated H20. Eluted DNA is ethanol precipitated and dissolved in DEPC- treated H20. DNA samples are 5' end labeled with [γ-32Ρ]-ΑΤΡ using T4 polynucleotide kinase for 30 min at 37°C. Polynucleotide kinase is heat denatured at 65°C for 20 min, and unincorporated radiolabel is removed using a column. Binding assays are performed in buffer containing 20 mM HEPES pH 7.5, 100 mM KCl, 5 mM MgCl2, 1 mM DTT and 10% glycerol in a total volume of 10 μΐ. Cas9 protein molecule is programmed with equimolar amounts of pre-annealed gRNA molecule and titrated from 100 pM to 1 μΜ. Radiolabeled DNA is added to a final concentration of 20 pM. Samples are incubated for 1 h at 37°C and resolved at 4°C on an 8% native polyacrylamide gel containing IX TBE and 5 mM MgCl2. Gels are dried and DNA visualized by phosphorimaging. Differential Scanning Flourimetry (DSF)
The thermostability of Cas9-gRNA ribonucleoprotein (RNP) complexes can be measured via DSF. This technique measures the thermostability of a protein, which can increase under favorable conditions such as the addition of a binding RNA molecule, e.g., a gRNA.
The assay is performed using two different protocols, one to test the best
stoichiometric ratio of gRNA:Cas9 protein and another to determine the best solution conditions for RNP formation.
To determine the best solution to form RNP complexes, a 2uM solution of Cas9 in water+lOx SYPRO Orange® (Life Techonologies cat#S-6650) and dispensed into a 384 well plate. An equimolar amount of gRNA diluted in solutions with varied pH and salt is then added. After incubating at room temperature for 10' and brief centrifugation to remove any bubbles,a Bio-Rad CFX384™ Real-Time System CIOOO Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20°C to 90°C with a 1° increase in temperature every lOseconds.
The second assay consists of mixing various concentrations of gRNA with 2uM Cas9 in optimal buffer from assay 1 above and incubating at RT for 10' in a 384 well plate. An equal volume of optimal buffer + lOx SYPRO Orange® (Life Techonologies cat#S-6650) is added and the plate sealed with Microseal® B adhesive (MSB-1001). Following brief
centrifugation to remove any bubbles, a Bio-Rad CFX384™ Real-Time System CIOOO Touch™ Thermal Cycler with the Bio-Rad CFX Manager software is used to run a gradient from 20°C to 90°C with a 1° increase in temperature every lOseconds. V. Genome Editing Approaches
Mutations in the MYOC gene may be corrected using one of the approaches or pathways described herein, e.g., using HDR and/or NHEJ. In an embodiment, a mutation or a mutational hotspot in the MYOC gene is corrected by homology directed repair (HDR) using a template nucleic acid (see Section V. l).
Also described herein are methods for targeted knockout of one or both alleles of the
MYOC gene using NHEJ (see Section V.2). In another embodiment, methods are provided for targeted knockdown of the MYOC gene (see Section V.3). V.l HDR Repair and Template Nucleic Acids
As described herein, nuclease-induced homology directed repair (HDR) can be used to alter a target sequence and correct (e.g., repair or edit) a mutation in the genome. While not wishing to be bound by theory, it is believed that alteration of the target sequence occurs by homology-directed repair (HDR) with a donor template or template nucleic acid. For example, the donor template or the template nucleic acid provides for alteration of the target sequence. It is contemplated that a plasmid donor can be used as a template for homologous recombination. It is further contemplated that a single stranded donor template can be used as a template for alteration of the target sequence by alternate methods of homology directed repair (e.g., single strand annealing) between the target sequence and the donor template. Donor template-effected alteration of a target sequence depends on cleavage by a Cas9 molecule. Cleavage by Cas9 can comprise a double strand break or two single strand breaks.
Mutations that can be corrected by HDR using a template nucleic acid include point mutations, mutation hotspots or sequence insertions. In an embodiment, a point mutation or a mutation hotspot (e.g., a mutation hotspot of less than about 30 bp, e.g., less than 25, 20, 15, 10 or 5 bp) can be corrected by either a single double-strand break or two single strand breaks. In an embodiment, a mutation hotspot (e.g., a mutation hotspot greater than about 30 bp, e.g., more than 35, 40, 45, 50, 75, 100, 150, 200, 250, 300, 400 or 500 bp) or an insertion can be corrected by (1) a single double-strand break, (2) two single strand breaks, (3) two double stranded breaks with a break occurring on each side of the target sequence, or (4) four single stranded breaks with a pair of single stranded breaks occurring on each side of the target sequence.
Mutations in the MYOC gene that can be corrected (e.g., altered) by HDR with a template nucleic acid include point mutations at T377R, P370L, I477N and/or mutational hotspots at amino acids 423-437, amino acids 246-252, or amino acids 477-502.
Double strand break mediated correction
In an embodiment, double strand cleavage is effected by a Cas9 molecule having cleavage activity associated with an HNH-like domain and cleavage activity associated with anRuvC-like domain, e.g., an N-terminal RuvC-like domain, e.g., a wild type Cas9. Such embodiments require only a single gRNA.
Single strand break mediated correction
In other embodiments, two single strand breaks, or nicks, are effected by a Cas9 molecule having nickase activity, e.g., cleavage activity associated with an HNH-like domain or cleavage activity associated with an N-terminal RuvC-like domain. Such embodiments require two gRNAs, one for placement of each single strand break. In an embodiment, the Cas9 molecule having nickase activity cleaves the strand to which the gRNA hybridizes, but not the strand that is complementary to the strand to which the gRNA hybridizes. In an embodiment, the Cas9 molecule having nickase activity does not cleave the strand to which the gRNA hybridizes, but rather cleaves the strand that is complementary to the strand to which the gRNA hybridizes.
In an embodiment, the nickase has HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation. D10A inactivates RuvC; therefore, the Cas9 nickase has (only) HNH activity and will cut on the strand to which the gRNA hybridizes (the complementary strand, which does not have the NGG PAM on it). In other embodiments, a Cas9 molecule having an H840, e.g., an H840A, mutation can be used as a nickase. H840A inactivates HNH; therefore, the Cas9 nickase has (only) RuvC activity and cuts on the non-complementary strand (the strand that has the NGG PAM and whose sequence is identical to the gRNA). In other embodiments, a Cas9 molecule having an N863, e.g., an N863A mutation, can be used as a nickase. N863A inactivates HNH therefore the Cas9 nickase has (only) RuvC activity and cuts on the non- complementary strand (the strand that has the NGG PAM and whose sequence is identical to the gRNA).
In an embodiment, in which a nickase and two gRNAs are used to position two single strand nicks, one nick is on the + strand and one nick is on the - strand of the target nucleic acid. The PAMs are outwardly facing. The gRNAs can be selected such that the gRNAs are separated by, from about 0-50, 0-100, or 0-200 nucleotides. In an embodiment, there is no overlap between the target sequence that is complementary to the targeting domains of the two gRNAs. In an embodiment, the gRNAs do not overlap and are separated by as much as 50, 100, or 200 nucleotides. In an embodiment, the use of two gRNAs can increase specificity, e.g., by decreasing off-target binding (Ran et al., Cell 2013; 154(6): 1380-1389).
In an embodiment, a single nick can be used to induce HDR. It is contemplated herein that a single nick can be used to increase the ratio of HR to NHEJ at a given cleavage site.
Placement of double strand or single strand breaks relative to the target position
The double strand break or single strand break in one of the strands should be sufficiently close to the target position such that correction occurs. In an embodiment, the distance is not more than 50, 100, 200, 300, 350 or 400 nucleotides. While not wishing to be bound by theory, it is believed that the break should be sufficiently close to the target sequence such that the break is within the region that is subject to exonuclease-mediated removal during end resection. If the distance between the target sequence and a break is too great, the mutation may not be included in the end resection and, therefore, may not be corrected, as donor sequence may only be used to correct sequence within the end resection region.
In an embodiment, in which a gRNA (unimolecular (or chimeric) or modular gRNA) and Cas9 nuclease induce a double strand break for the purpose of inducing HDR-mediated correction, the cleavage site is between 0-200 bp (e.g., 0 to 175, 0 to 150, 0 to 125, 0 to 100, 0 to 75, 0 to 50, 0 to 25, 25 to 200, 25 to 175, 25 to 150, 25 to 125, 25 to 100, 25 to 75, 25 to 50, 50 to 200, 50 to 175, 50 to 150, 50 to 125, 50 to 100, 50 to 75, 75 to 200, 75 to 175, 75 to 150, 75 to 125, 75 to 100 bp) away from the target position. In an embodiment, the cleavage site is between 0-100 bp (e.g., 0 to 75, 0 to 50, 0 to 25, 25 to 100, 25 to 75, 25 to 50, 50 to 100, 50 to 75 or 75 to 100 bp) away from the target position.
In an embodiment, in which two gRNAs (independently, unimolecular (or chimeric) or modular gRNA) complexing with Cas9 nickases induce two single strand breaks for the purpose of inducing HDR-mediated correction, the closer nick is between 0-200 bp (e.g., 0 to 175, 0 to 150, 0 to 125, 0 to 100, 0 to 75, 0 to 50, 0 to 25, 25 to 200, 25 to 175, 25 to 150, 25 to 125, 25 to 100, 25 to 75, 25 to 50, 50 to 200, 50 to 175, 50 to 150, 50 to 125, 50 to 100, 50 to 75, 75 to 200, 75 to 175, 75 to 150, 75 to 125, 75 to 100 bp) away from the target position and the two nicks will ideally be within 25-55 bp of each other (e.g., 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 30 to 55, 30 to 50, 30 to 45, 30 to 40, 30 to 35, 35 to 55, 35 to 50, 35 to 45, 35 to 40, 40 to 55, 40 to 50, 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20, 10 or 5 bp away from each other). In an embodiment, the cleavage site is between 0-100 bp (e.g., 0 to 75, 0 to 50, 0 to 25, 25 to 100, 25 to 75, 25 to 50, 50 to 100, 50 to 75 or 75 to 100 bp) away from the target position.
In one embodiment, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double-strand break on both sides of a target position. In an alternate embodiment, three gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double strand break (i.e., one gRNA complexes with a cas9 nuclease) and two single strand breaks or paired single stranded breaks (i.e., two gRNAs complex with Cas9 nickases) on either side of the target position. In another embodiment, four gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to generate two pairs of single stranded breaks (i.e., two pairs of two gRNAs complex with Cas9 nickases) on either side of the target position. The double strand break(s) or the closer of the two single strand nicks in a pair will ideally be within 0- 500 bp of the target position (e.g., no more than 450, 400, 350, 300, 250, 200, 150, 100, 50 or 25 bp from the target position). When nickases are used, the two nicks in a pair are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp). In an embodiment, the gRNAs are configured to place a single strand break on either side of the target position. In an embodiment, the gRNAs are configured to place a single strand break on the same side (either 5' or 3') of the target position.
Regardless of whether a break is a double strand or a single strand break, the gRNA should be configured to avoid unwanted target chromosome elements, such as repeated elements, e.g., an Alu repeat, in the target domain. In addition, a break, whether a double strand or a single strand break, should be sufficiently distant from any sequence that should not be altered. For example, cleavage sites positioned within introns should be sufficiently distant from any intron/exon border, or naturally occurring splice signal, to avoid alteration of the exonic sequence or unwanted splicing events.
Length of the homology arms
The homology arm should extend at least as far as the region in which end resection may occur, e.g., in order to allow the resected single stranded overhang to find a
complementary region within the donor template. The overall length could be limited by parameters such as plasmid size or viral packaging limits. In an embodiment, a homology arm does not extend into repeated elements, e.g., Alu repeats, LINE repeats.
Exemplary homology arm lengths include a least 50, 100, 250, 500, 750 or 1000 nucleotides.
Target position, as used herein, refers to a site on a target nucleic acid (e.g., the chromosome) that is modified by a Cas9 molecule-dependent process. For example, the target position can be a modified Cas9 molecule cleavage of the target nucleic acid and template nucleic acid directed modification, e.g., correction, of the target position. In an embodiment, a target position can be a site between two nucleotides, e.g., adjacent nucleotides, on the target nucleic acid into which one or more nucleotides is added. The target position may comprise one or more nucleotides that are altered, e.g., corrected, by a template nucleic acid. In an embodiment, the target position is within a target sequence (e.g., the sequence to which the gRNA binds). In an embodiment, a target position is upstream or downstream of a target sequence (e.g., the sequence to which the gRNA binds).
A template nucleic acid, as that term is used herein, refers to a nucleic acid sequence which can be used in conjunction with a Cas9 molecule and a gRNA molecule to alter the structure of a target position. In an embodiment, the target nucleic acid is modified to have the some or all of the sequence of the template nucleic acid, typically at or near cleavage site(s). In an embodiment, the template nucleic acid is single stranded. In an alternate embodiment, the template nucleic acid is double stranded. In an embodiment, the template nucleic acid is DNA, e.g., double stranded DNA. In an alternate embodiment, the template nucleic acid is single stranded DNA. In an embodiment, the template nucleic acid is encoded on the same vector backbone, e.g. AAV genome, plasmid DNA, as the Cas9 and gRNA. In an embodiment, the template nucleic acid is excised from a vector backbone in vivo, e.g., it is flanked by gRNA recognition sequences.
In an embodiment, the template nucleic acid alters the structure of the target position by participating in a homology directed repair event. In an embodiment, the template nucleic acid alters the sequence of the target position. In an embodiment, the template nucleic acid results in the incorporation of a modified, or non-naturally occurring base into the target nucleic acid.
Typically, the template sequence undergoes a breakage mediated or catalyzed recombination with the target sequence. In an embodiment, the template nucleic acid includes sequence that corresponds to a site on the target sequence that is cleaved by an eaCas9 mediated cleavage event. In an embodiment, the template nucleic acid includes sequence that corresponds to both, a first site on the target sequence that is cleaved in a first Cas9 mediated event, and a second site on the target sequence that is cleaved in a second Cas9 mediated event.
In an embodiment, the template nucleic acid can include sequence which results in an alteration in the coding sequence of a translated sequence, e.g., one which results in the substitution of one amino acid for another in a protein product, e.g., transforming a mutant allele into a wild type allele, transforming a wild type allele into a mutant allele, and/or introducing a stop codon, insertion of an amino acid residue, deletion of an amino acid residue, or a nonsense mutation.
In another embodiment, the template nucleic acid can include sequence which results in an alteration in a non-coding sequence, e.g., an alteration in an exon or in a 5' or 3' non- translated or non-transcribed region. Such alterations include an alteration in a control element, e.g., a promoter, enhancer, and an alteration in a cis-acting or trans-acting control element.
A template nucleic acid having homology with a target position in the MYOC gene can be used to alter the structure of a target sequence. The template sequence can be used to alter an unwanted structure, e.g., an unwanted or mutant nucleotide.
A template nucleic acid comprises the following components:
[5' homology arm] -[replacement sequence] -[3' homology arm].
The homology arms provide for recombination into the chromosome, thus replacing the undesired element, e.g., a mutation or signature, with the replacement sequence. In an embodiment, the homology arms flank the most distal cleavage sites.
In an embodiment, the 3 ' end of the 5 ' homology arm is the position next to the 5 ' end of the replacement sequence. In an embodiment, the 5' homology arm can extend at least 10, 20, 30, 40, 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 5' from the 5' end of the replacement sequence.
In an embodiment, the 5' end of the 3' homology arm is the position next to the 3' end of the replacement sequence. In an embodiment, the 3' homology arm can extend at least 10, 20, 30, 40, 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, or 2000 nucleotides 3' from the 3' end of the replacement sequence. Exemplary Template Nucleic Acids
Exemplary template nucleic acids (also referred to herein as donor constructs) to correction a mutation, e.g., P370L, in the MYOC gene, are provided.
Suitable sequence for the 5 ' homology arm for a template nucleic acid to correct a P370L mutation in the MYOC gene can include the following sequence or a portion thereof: TTGCACCACTGCACTCCAGCCTAGGTAACAGTGCAAGACCCTGTCTCAAAAAATAATTATTT TCATGTTTATTATATTAAAATGATGTATGAAATATGTGACTCATCAGGGCTTGAAAAACTTT GTTGTATGGAGATTATTCTTATGAGTTGATTTTTCTCTCTCCTACCTTATAGTAATGAAATA AACCAGGCATGAAAGTCACAATAAGTAATACAATGAACACCCATGGGTCCCTGCCCAGCTTA AGTAGAATATTACAAATGCAGTTGAAGCCCTCTGTGCAACTTT CATC CTTACAACTGAT ACT GAGTGAATTGTACTTTAAATATTTTATAGCTCCCACTCCCATGCATGCCCCTCAGTGATAGC AAT AAT T GT C AAT AAC AT G AAAC AC AG AT T G AT C AT AT AGC AT T T AC C AT AT AT T T AC T C T A TACCAAGCACTTAACATATATAATTACATTTAAAATTTACAACAGCCCTACTACCCAAAACA C T AT T AG T AT C C C C T T T T AC AAAT GC G AT AAC T GAGGC G T AGAGAGC T AAG T AAC T T AC T GA AAGTCACACAGCCAGCGGGTGGTAGAGCCTAGCTTTAAACCCAGACGATTTGTCTCCAGGGC TGTCACATCTACTGGCTCTGCCAAGCTTCCGCATGATCATTGTCTGTGTTTGGAAAGATTAT GGATTAAGTGGTGCTTCGTTTTCTTTTCTGAATTTACCAGGATGTGGAGAACTAGTTTGGGT AGGAGAGCCTCTCACGCTGAGAACAGCAGAAACAATTACTGGCAAGTATGGTGTGTGGATGC GAGACCCCAAGCCCACCTACCCCTACACCCAGGAGACCACGTGGAGAATCGACACAGTTGGC ACGGATGTCCGCCAGGTTTTTGAGTATGACCTCATCAGCCAGTTTATGCAGGGCTACCCTTC TAAGGTTCACATACTGCCTAGGCCACTGGAAAGCACGGGTGCTGTGGTGTACTCGGGGAGCC TCTATTTCCAGGGCGCTGAGTCCAGAACTGTCATAAGATATGAGCTGAATACCGAGACAGTG AAGGCTGAGAAGGAAATCCCTGGAGCTGGCTACCACGGACAGTTCC (SEQ ID NO: 8856)
Suitable sequence for the 3' homology arm for a template nucleic acid to correct
P370L mutation in the MYOC gene can include the following sequence or a portion thereof:
GTATTCTTGGGGTGGCTACACGGACATTGACTTGGCTGTGGATGAAGCAGGCCTCTGGGTCA TTTACAGCACCGATGAGGCCAAAGGTGCCATTGTCCTCTCCAAACTGAACCCAGAGAATCTG GAACTCGAACAAACCTGGGAGACAAACATCCGTAAGCAGTCAGTCGCCAATGCCTTCATCAT CTGTGGCACCTTGTACACCGTCAGCAGCTACACCTCAGCAGATGCTACCGTCAACTTTGCTT ATGACACAGGCACAGGTATCAGCAAGACCCTGACCATCCCATTCAAGAACCGCTATAAGTAC AGCAGCATGATTGACTACAACCCCCTGGAGAAGAAGCTCTTTGCCTGGGACAACTTGAACAT GGTCACTTATGACATCAAGCTCTCCAAGATGTGAAAAGCCTCCAAGCTGTACAGGCAATGGC AGAAGGAGATGCTCAGGGCTCCTGGGGGGAGCAGGCTGAAGGGAGAGCCAGCCAGCCAGGGC CCAGGCAGCTTTGACTGCTTTCCAAGTTTTCATTAATCCAGAAGGATGAACATGGTCACCAT CTAACTATTCAGGAATTGTAGTCTGAGGGCGTAGACAATTTCATATAATAAATATCCTTTAT CTTCTGTCAGCATTTATGGGATGTTTAATGACATAGTTCAAGTTTTCTTGTGATTTGGGGCA AAAGCTGTAAGGCATAATAGTTTCTTCCTGAAAACCATTGCTCTTGCATGTTACATGGTTAC CACAAGCCACAATAAAAAGCATAACTTCTAAAGGAAGCAGAATAGCTCCTCTGGCCAGCATC GAATATAAGTAAGATGCATTTACTACAGTTGGCTTCTAATGCTTCAGATAGAATACAGTTGG GTCTCACATAACCCTTTACATTGTGAAATAAAATTTTCTTACCCAACGTTCTCTTCCTTGAA CTTTGTGGGAATCTTTGCTTAAGAGAAGGATATAGATTCCAACCATCAGGTAATTCCTTCAG GTTGGGAGATGTGATTGCAGGATGTTAAAGGTGGTGTGTGTGTGTGTGTGTGTGTGTGTAAC TGAGAGGCTTGTGCCTGGTTTTGAGGTGCTGCCCAGGATGACGCCAA (SEQ ID NO: 8857)
In an embodiment, the replacement sequence comprises or consists of a cytosine (C) residue.
In an embodiment, to correct P370L in the MYOC gene, the homology arms, e.g., the 5' and 3' homology arms, may each comprise about 1000 base pairs (bp) of sequence flanking the most distal gRNAs (e.g., 1 lOObp of sequence on either side of the mutation). The 5' homology arm is shown as bold sequence, codon 370 is shown as underlined sequence, the inserted base to correct the P370L mutation is shown as boxed sequence, and the 3 ' homology arm is shown with no emphasis sequence.
TTGCACCACTGCACTCCAGCCTAGGTAACAGTGCAAGACCCTGTCTCAAAAAATAATTATTT TCATGTTTATTATATTAAAATGATGTATGAAATATGTGACTCATCAGGGCTTGAAAAACTTT GTTGTATGGAGATTATTCTTATGAGTTGATTTTTCTCTCTCCTACCTTATAGTAATGAAATA AACCAGGCATGAAAGTCACAATAAGTAATACAATGAACACCCATGGGTCCCTGCCCAGCTTA AGTAGAATATTACAAATGCAGTTGAAGCCCTCTGTGCAACTTTCATCCTTACAACTGATACT GAGTGAATTGTACTTTAAATATTTTATAGCTCCCACTCCCATGCATGCCCCTCAGTGATAGC AATAATTGTCAATAACATGAAACACAGATTGATCATATAGCATTTACCATATATTTACTCTA TACCAAGCACTTAACATATATAATTACATTTAAAATTTACAACAGCCCTACTACCCAAAACA CTATTAGTATCCCCTTTTACAAATGCGATAACTGAGGCGTAGAGAGCTAAGTAACTTACTGA AAGTCACACAGCCAGCGGGTGGTAGAGCCTAGCTTTAAACCCAGACGATTTGTCTCCAGGGC TGTCACATCTACTGGCTCTGCCAAGCTTCCGCATGATCATTGTCTGTGTTTGGAAAGATTAT GGATTAAGTGGTGCTTCGTTTTCTTTTCTGAATTTACCAGGATGTGGAGAACTAGTTTGGGT AGGAGAGCCTCTCACGCTGAGAACAGCAGAAACAATTACTGGCAAGTATGGTGTGTGGATGC GAGACCCCAAGCCCACCTACCCCTACACCCAGGAGACCACGTGGAGAATCGACACAGTTGGC ACGGATGTCCGCCAGGTTTTTGAGTATGACCTCATCAGCCAGTTTATGCAGGGCTACCCTTC TAAGGTTCACATACTGCCTAGGCCACTGGAAAGCACGGGTGCTGTGGTGTACTCGGGGAGCC TCTATTTCCAGGGCGCTGAGTCCAGAACTGTCATAAGATATGAGCTGAATACCGAGACAGTG AAGGCTGAGAAGGAAATCCCTGGAGCTGGCTACCACGGACAGTTCC[C|GTATTCTTGGGGTGG CTACACGGACATTGACTTGGCTGTGGATGAAGCAGGCCTCTGGGTCATTTACAGCACCGATG AGGCCAAAGGTGCCATTGTCCTCTCCAAACTGAACCCAGAGAATCTGGAACTCGAACAAACC TGGGAGACAAACATCCGTAAGCAGTCAGTCGCCAATGCCTTCATCATCTGTGGCACCTTGTA CACCGTCAGCAGCTACACCTCAGCAGATGCTACCGTCAACTTTGCTTATGACACAGGCACAG GTATCAGCAAGACCCTGACCATCCCATTCAAGAACCGCTATAAGTACAGCAGCATGATTGAC TACAACCCCCTGGAGAAGAAGCTCTTTGCCTGGGACAACTTGAACATGGTCACTTATGACAT CAAGCTCTCCAAGATGTGAAAAGCCTCCAAGCTGTACAGGCAATGGCAGAAGGAGATGCTCA GGGCTCCTGGGGGGAGCAGGCTGAAGGGAGAGCCAGCCAGCCAGGGCCCAGGCAGCTTTGAC T GC T T T C C AAG T T T T C AT T AAT C C AGAAGGAT GAAC AT G GT C AC C AT C T AAC T AT T C AG GAA TTGTAGTCTGAGGGCGTAGACAATTTCATATAATAAATATCCTTTATCTTCTGTCAGCATTT ATGGGATGTTTAATGACATAGTTCAAGTTTTCTTGTGATTTGGGGCAAAAGCTGTAAGGCAT AAT AGT T T C T T C C T G AAAAC C AT T GC T C T T G C AT G T T AC AT GG T T AC C AC AAGC C AC AAT AA AAAGCATAACTTCTAAAGGAAGCAGAATAGCTCCTCTGGCCAGCATCGAATATAAGTAAGAT GCATTTACTACAGTTGGCTTCTAATGCTTCAGATAGAATACAGTTGGGTCTCACATAACCCT TTACATTGTGAAATAAAATTTTCTTACCCAACGTTCTCTTCCTTGAACTTTGTGGGAATCTT TGCTTAAGAGAAGGATATAGATTCCAACCATCAGGTAATTCCTTCAGGTTGGGAGATGTGAT TGCAGGATGTTAAAGGTGGTGTGTGTGTGTGTGTGTGTGTGTGTAACTGAGAGGCTTGTGCC TGGTTTTGAGGTGCTGCCCAGGATGACGCCAA
(Template Construct 1; SEQ ID NO: 8858)
As described below in Table 24, shorter homology arms, e.g., 5' and/or 3' homology arms may be used.
It is contemplated herein that one or both homology arms may be shortened to avoid including certain sequence repeat elements, e.g., Alu repeats, LINE elements. For example, a 5' homology arm may be shortened to avoid a sequence repeat element. In other embodiments, a 3' homology arm may be shortened to avoid a sequence repeat element. In some embodiments, both the 5' and the 3' homology arms may be shortened to avoid including certain sequence repeat elements.
In an embodiment, to correct P370L in the MYOC gene, the 5' homology arm may be shortened less than 600 nucleotides, e.g., approximately 550 nucleotides, e.g., 450 nucleotides, to avoid inclusion of a LINE repeat element in the 5' homology arm. An exemplary 5' homology arm is shown as bold sequence, codon 370 is shown as underlined sequence, the inserted base to correct the P370L mutation is shown as non-bold and boxed sequence, and an exemplary 3' homology arm is shown with no emphasis.
AAGCTTCCGCATGATCATTGTCTGTGTTTGGAAAGATTATGGATTAAGTGGTGCTTCGTTTT CTTTTCTGAATTTACCAGGATGTGGAGAACTAGTTTGGGTAGGAGAGCCTCTCACGCTGAGA ACAGCAGAAACAATTACTGGCAAGTATGGTGTGTGGATGCGAGACCCCAAGCCCACCTACCC CTACACCCAGGAGACCACGTGGAGAATCGACACAGTTGGCACGGATGTCCGCCAGGTTTTTG AGTATGACCTCATCAGCCAGTTTATGCAGGGCTACCCTTCTAAGGTTCACATACTGCCTAGG CCACTGGAAAGCACGGGTGCTGTGGTGTACTCGGGGAGCCTCTATTTCCAGGGCGCTGAGTC CAGAACTGTCATAAGATATGAGCTGAATACCGAGACAGTGAAGGCTGAGAAGGAAATCCCTG GAGCTGGCTACCACGGACAGTTCC[C|GTATTCTTGGGGTGGCTACACGGACATTGACTTGGCT GTGGATGAAGCAGGCCTCTGGGTCATTTACAGCACCGATGAGGCCAAAGGTGCCATTGTCCT C T C CAAACT GAAC C C AGAG AAT C TGGAAC T C GAACAAAC C T GG GAGAC AAAC AT C CGTAAGC AGTCAGTCGCCAATGCCTTCATCATCTGTGGCACCTTGTACACCGTCAGCAGCTACACCTCA GCAGATGCTACCGTCAACTTTGCTTATGACACAGGCACAGGTATCAGCAAGACCCTGACCAT CCCATTCAAGAACCGCTATAAGTACAGCAGCATGATTGACTACAACCCCCTGGAGAAGAAGC TCTTTGCCTGGGACAACTTGAACATGGTCACTTATGACATCAAGCTCTCCAAGATGTGAAAA GCCTCCAAGCTGTACAGGCAATGGCAGAAGGAGATGCTCAGGGCTCCTGGGGGGAGCAGGCT GAAGGGAGAGCCAGCCAGCCAGGGCCCAGGCAGCTTTGACTGCTTTCCAAGTTTTCATTAAT CCAGAAGGATGAACATGGTCACCATCTAACTATTCAGGAATTGTAGTCTGAGGGCGTAGACA ATTTCATATAATAAATATCCTTTATCTTCTGTCAGCATTTATGGGATGTTTAATGACATAGT TCAAGTTTTCTTGTGATTTGGGGCAAAAGCTGTAAGGCATAATAGTTTCTTCCTGAAAACCA TTGCTCTTGCATGTTACATGGTTACCACAAGCCACAATAAAAAGCATAACTTCTAAAGGAAG CAGAATAGCTCCTCTGGCCAGCATCGAATATAAGTAAGATGCATTTACTACAGTTGGCTTCT AATGCTTCAGATAGAATACAGTTGGGTCTCACATAACCCTTTACATTGTGAAATAAAATTTT CTTACCCAACGTTCTCTTCCTTGAACTTTGTGGGAATCTTTGCTTAAGAGAAGGATATAGAT TCCAACCATCAGGTAATTCCTTCAGGTTGGGAGATGTGATTGCAGGATGTTAAAGGTGGTGT GTGTGTGTGTGTGTGTGTGTGTAACTGAGAGGCTTGTGCCTGGTTTTGAGGTGCTGCCCAGG ATGACGCCAA
(Template Construct 2; SEQ ID NO: 8859)
It is contemplated herein that, in an embodiment, template nucleic acids for correcting a mutation may designed for use as a single- stranded oligonucleotide (ssODN). When using a ssODN, 5' and 3' homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length. Longer homology arms are also contemplated for ssODNs as improvements in oligonucleotide synthesis continue to be made.
Exemplary template nucleic acids to correct a mutation, e.g., I477N or mutations in the mutational hotspot 477-502 region, in the MYOC gene, are provided.
Suitable sequence for the 5 ' homology arm for a template nucleic acid to correct an I477N mutation or mutations in the mutational hotspot 477-502 region in the MYOC gene can include the following sequence or a portion thereof:
GAACACCCATGGGTCCCTGCCCAGCTTAAGTAGAATATTACAAATGCAGTTGAAGCCCTCTG TGCAACTTTCATCCTTACAACTGATACTGAGTGAATTGTACTTTAAATATTTTATAGCTCCC ACTCCCATGCATGCCCCTCAGTGATAGCAATAATTGTCAATAACATGAAACACAGATTGATC ATATAGCATTTACCATATATTTACTCTATACCAAGCACTTAACATATATAATTACATTTAAA ATTTACAACAGCCCTACTACCCAAAACACTATTAGTATCCCCTTTTACAAATGCGATAACTG AGGCGTAGAGAGCTAAGTAACTTACTGAAAGTCACACAGCCAGCGGGTGGTAGAGCCTAGCT TTAAACCCAGACGATTTGTCTCCAGGGCTGTCACATCTACTGGCTCTGCCAAGCTTCCGCAT GATCATTGTCTGTGTTTGGAAAGATTATGGATTAAGTGGTGCTTCGTTTTCTTTTCTGAATT TACCAGGATGTGGAGAACTAGTTTGGGTAGGAGAGCCTCTCACGCTGAGAACAGCAGAAACA ATTACTGGCAAGTATGGTGTGTGGATGCGAGACCCCAAGCCCACCTACCCCTACACCCAGGA GACCACGTGGAGAATCGACACAGTTGGCACGGATGTCCGCCAGGTTTTTGAGTATGACCTCA TCAGCCAGTTTATGCAGGGCTACCCTTCTAAGGTTCACATACTGCCTAGGCCACTGGAAAGC ACGGGTGCTGTGGTGTACTCGGGGAGCCTCTATTTCCAGGGCGCTGAGTCCAGAACTGTCAT AAGATATGAGCTGAATACCGAGACAGTGAAGGCTGAGAAGGAAATCCCTGGAGCTGGCTACC ACGGACAGTTCCCGTATTCTTGGGGTGGCTACACGGACATTGACTTGGCTGTGGATGAAGCA GGCCTCTGGGTCATTTACAGCACCGATGAGGCCAAAGGTGCCATTGTCCTCTCCAAACTGAA CCCAGAGAATCTGGAACTCGAACAAACCTGGGAGACAAACATCCGTAAGCAGTCAGTCGCCA ATGCCTTCATCATCTGTGGCACCTTGTACACCGTCAGCAGCTACACCTCAGCAGATGCTACC GTCAACTTTGCTTATGACACAGGCACAGGTATCAGCAAGACCCTGACCATCCCATTCAAGAA CCGCTATAAGTACAGCAGCATGA (SEQ ID NO: 8860)
Suitable sequence for the 3 ' homology arm for a template nucleic acid to correct an I477N mutation or mutations in the mutational hotspot 477-502 region in the MYOC gene can include the following sequence or a portion thereof:
AAGATGTGAAAAGCCTCCAAGCTGTACAGGCAATGGCAGAAGGAGATGCTCAGGGCTCCTGG GGGGAGCAGGCTGAAGGGAGAGCCAGCCAGCCAGGGCCCAGGCAGCTTTGACTGCTTTCCAA GTTTTCATTAATCCAGAAGGATGAACATGGTCACCATCTAACTATTCAGGAATTGTAGTCTG AGGGCGTAGACAATTTCATATAATAAATATCCTTTATCTTCTGTCAGCATTTATGGGATGTT TAATGACATAGTTCAAGTTTTCTTGTGATTTGGGGCAAAAGCTGTAAGGCATAATAGTTTCT TCCTGAAAACCATTGCTCTTGCATGTTACATGGTTACCACAAGCCACAATAAAAAGCATAAC TTCTAAAGGAAGCAGAATAGCTCCTCTGGCCAGCATCGAATATAAGTAAGATGCATTTACTA CAGTTGGCTTCTAATGCTTCAGATAGAATACAGTTGGGTCTCACATAACCCTTTACATTGTG AAATAAAATTTTCTTACCCAACGTTCTCTTCCTTGAACTTTGTGGGAATCTTTGCTTAAGAG AAGGATATAGATTCCAACCATCAGGTAATTCCTTCAGGTTGGGAGATGTGATTGCAGGATGT TAAAGGTGGTGTGTGTGTGTGTGTGTGTGTGTGTAACTGAGAGGCTTGTGCCTGGTTTTGAG GTGCTGCCCAGGATGACGCCAAGCAAATAGCAGCATCCACACTTTCCCACCTCCATCTCCTG GTGCTCTCGGCACTACCGGAGCAATCTTTCCATCTCTCCCCTGAACCCACCCTCTATTCACC CTAACTCCACTTCAGTTTGCTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAG TCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGTTCCGCC TCCCAGGTTCACACCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGC CACCACGCCTGGCTAATTTTTTTTTTTTCCAGTGAAGATGGGGTTTCACCATGTTAGCCAGG ATGGTCTCGATCTCCTGACCTTGTCATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTAC AGGCGTGAGCCACCACGCCCAGCCCCTCCACTTCAGTTTTTATCTGTCATCAGGGGTATGAA TTTTATAAGCCACAACCTCAGG (SEQ ID NO: 8861) In an embodiment, when correcting the I477N mutation, the replacement sequence comprises or consists of a thymine (T) residue.
In an embodiment, to correct I477N in the MYOC gene, the homology arms, e.g., the 5' and 3' homology arms, may each comprise about 1000 base pairs (bp) of sequence flanking the most distal gRNAs (e.g., 1200bp of sequence on either side of the mutation). The 5 ' homology arm is shown as bold sequence, codon 477 is shown as underlined sequence, the inserted base to correct the I477N mutation is shown as boxed sequence, and the 3 ' homology arm is shown as no emphasis sequence.
GAACACCCATGGGTCCCTGCCCAGCTTAAGTAGAATATTACAAATGCAGTTGAAGCCCTCTG TGCAACTTTCATCCTTACAACTGATACTGAGTGAATTGTACTTTAAATATTTTATAGCTCCC ACTCCCATGCATGCCCCTCAGTGATAGCAATAATTGTCAATAACATGAAACACAGATTGATC ATATAGCATTTACCATATATTTACTCTATACCAAGCACTTAACATATATAATTACATTTAAA ATTTACAACAGCCCTACTACCCAAAACACTATTAGTATCCCCTTTTACAAATGCGATAACTG AGGCGTAGAGAGCTAAGTAACTTACTGAAAGTCACACAGCCAGCGGGTGGTAGAGCCTAGCT TTAAACCCAGACGATTTGTCTCCAGGGCTGTCACATCTACTGGCTCTGCCAAGCTTCCGCAT GATCATTGTCTGTGTTTGGAAAGATTATGGATTAAGTGGTGCTTCGTTTTCTTTTCTGAATT TACCAGGATGTGGAGAACTAGTTTGGGTAGGAGAGCCTCTCACGCTGAGAACAGCAGAAACA ATTACTGGCAAGTATGGTGTGTGGATGCGAGACCCCAAGCCCACCTACCCCTACACCCAGGA GACCACGTGGAGAATCGACACAGTTGGCACGGATGTCCGCCAGGTTTTTGAGTATGACCTCA TCAGCCAGTTTATGCAGGGCTACCCTTCTAAGGTTCACATACTGCCTAGGCCACTGGAAAGC ACGGGTGCTGTGGTGTACTCGGGGAGCCTCTATTTCCAGGGCGCTGAGTCCAGAACTGTCAT AAGATATGAGCTGAATACCGAGACAGTGAAGGCTGAGAAGGAAATCCCTGGAGCTGGCTACC ACGGACAGTTCCCGTATTCTTGGGGTGGCTACACGGACATTGACTTGGCTGTGGATGAAGCA GGCCTCTGGGTCATTTACAGCACCGATGAGGCCAAAGGTGCCATTGTCCTCTCCAAACTGAA CCCAGAGAATCTGGAACTCGAACAAACCTGGGAGACAAACATCCGTAAGCAGTCAGTCGCCA ATGCCTTCATCATCTGTGGCACCTTGTACACCGTCAGCAGCTACACCTCAGCAGATGCTACC GTCAACTTTGCTTATGACACAGGCACAGGTATCAGCAAGACCCTGACCATCCCATTCAAGAA
CCGCTATAAGTACAGCAGCATGA|T|TAT T GAC T AC AAC C C C C T GG AGAAGAAG CTCTTTGCCT
GGGACAACTTGAACATGGTCACTTATGACATCAAGCTCTCCAAGATGTGAAAAGCCTCCAAG CTGTACAGGCAATGGCAGAAGGAGATGCTCAGGGCTCCTGGGGGGAGCAGGCTGAAGGGAGA GCCAGCCAGCCAGGGCCCAGGCAGCTTTGACTGCTTTCCAAGTTTTCATTAATCCAGAAGGA TGAACATGGTCACCATCTAACTATTCAGGAATTGTAGTCTGAGGGCGTAGACAATTTCATAT AATAAATATCCTTTATCTTCTGTCAGCATTTATGGGATGTTTAATGACATAGTTCAAGTTTT CTTGTGATTTGGGGCAAAAGCTGTAAGGCATAATAGTTTCTTCCTGAAAACCATTGCTCTTG CATGTTACATGGTTACCACAAGCCACAATAAAAAGCATAACTTCTAAAGGAAGCAGAATAGC TCCTCTGGCCAGCATCGAATATAAGTAAGATGCATTTACTACAGTTGGCTTCTAATGCTTCA GATAGAATACAGTTGGGTCTCACATAACCCTTTACATTGTGAAATAAAATTTTCTTACCCAA CGTTCTCTTCCTTGAACTTTGTGGGAATCTTTGCTTAAGAGAAGGATATAGATTCCAACCAT CAGGTAATTCCTTCAGGTTGGGAGATGTGATTGCAGGATGTTAAAGGTGGTGTGTGTGTGTG TGTGTGTGTGTGTAACTGAGAGGCTTGTGCCTGGTTTTGAGGTGCTGCCCAGGATGACGCCA AGCAAATAGCAGCATCCACACTTTCCCACCTCCATCTCCTGGTGCTCTCGGCACTACCGGAG CAATCTTTCCATCTCTCCCCTGAACCCACCCTCTATTCACCCTAACTCCACTTCAGTTTGCT TTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCT GGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGTTCCGCCTCCCAGGTTCACACCATTCTC CTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCTGGCTAATTTTT TTTTTTTCCAGTGAAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCT TGTCATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCA GCCCCTCCACTTCAGTTTTTATCTGTCATCAGGGGTATGAATTTTATAAGCCACAACCTCAG
G
(Template Construct 3; SEQ ID NO: 8862)
In an embodiment, when correcting the mutational hotspot 477-502 region, the replacement sequence comprises or consists of:
TTATTGACTACAACCCCCTGGAGAAGAAGCTCTTTGCCTGGGACAACTTGAACATGGTCACT TATGACATCAAGCTCTCC (SEQ ID NO: 8863).
It is contemplated herein that one or both homology arms may be shortened to avoid including certain sequence repeat elements, e.g., Alu repeats, LINE elements. For example, a 5' homology arm may be shortened to avoid a sequence repeat element. In other
embodiments, a 3' homology arm may be shortened to avoid a sequence repeat element. In some embodiments, both the 5' and the 3' homology arms may be shortened to avoid including certain sequence repeat elements.
It is contemplated herein that, in an embodiment, template nucleic acids for correcting a mutation may designed for use as a single- stranded oligonucleotide (ssODN). When using a ssODN, 5' and 3' homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length. Longer homology arms are also contemplated for ssODNs as improvements in oligonucleotide synthesis continue to be made.
Exemplary template nucleic acids to correct a mutational hotspot 477-502 region, in the MYOC gene, are provided. In an embodiment, to correct the mutational hotspot 477-502 region in the MYOC gene, the homology arms, e.g., the 5' and 3' homology arms, may each comprise about 1000 base pairs (bp) of sequence flanking the most distal gRNAs (e.g., 1200bp of sequence on either side of the mutation). The 5' homology arm is shown as bold sequence, the inserted nucleotides to correct the mutational hotspot 477-502 region is shown as boxed sequence, and the 3 ' homology arm is shown as no emphasis sequence.
GAACACCCATGGGTCCCTGCCCAGCTTAAGTAGAATATTACAAATGCAGTTGAAGCCCTCTG TGCAACTTTCATCCTTACAACTGATACTGAGTGAATTGTACTTTAAATATTTTATAGCTCCC ACTCCCATGCATGCCCCTCAGTGATAGCAATAATTGTCAATAACATGAAACACAGATTGATC ATATAGCATTTACCATATATTTACTCTATACCAAGCACTTAACATATATAATTACATTTAAA ATTTACAACAGCCCTACTACCCAAAACACTATTAGTATCCCCTTTTACAAATGCGATAACTG AGGCGTAGAGAGCTAAGTAACTTACTGAAAGTCACACAGCCAGCGGGTGGTAGAGCCTAGCT TTAAACCCAGACGATTTGTCTCCAGGGCTGTCACATCTACTGGCTCTGCCAAGCTTCCGCAT GATCATTGTCTGTGTTTGGAAAGATTATGGATTAAGTGGTGCTTCGTTTTCTTTTCTGAATT TACCAGGATGTGGAGAACTAGTTTGGGTAGGAGAGCCTCTCACGCTGAGAACAGCAGAAACA ATTACTGGCAAGTATGGTGTGTGGATGCGAGACCCCAAGCCCACCTACCCCTACACCCAGGA GACCACGTGGAGAATCGACACAGTTGGCACGGATGTCCGCCAGGTTTTTGAGTATGACCTCA TCAGCCAGTTTATGCAGGGCTACCCTTCTAAGGTTCACATACTGCCTAGGCCACTGGAAAGC ACGGGTGCTGTGGTGTACTCGGGGAGCCTCTATTTCCAGGGCGCTGAGTCCAGAACTGTCAT AAGATATGAGCTGAATACCGAGACAGTGAAGGCTGAGAAGGAAATCCCTGGAGCTGGCTACC ACGGACAGTTCCCGTATTCTTGGGGTGGCTACACGGACATTGACTTGGCTGTGGATGAAGCA GGCCTCTGGGTCATTTACAGCACCGATGAGGCCAAAGGTGCCATTGTCCTCTCCAAACTGAA CCCAGAGAATCTGGAACTCGAACAAACCTGGGAGACAAACATCCGTAAGCAGTCAGTCGCCA ATGCCTTCATCATCTGTGGCACCTTGTACACCGTCAGCAGCTACACCTCAGCAGATGCTACC GTCAACTTTGCTTATGACACAGGCACAGGTATCAGCAAGACCCTGACCATCCCATTCAAGAA
CCGCTATAAGTACAGCAGCATGAT TAT T GAC T AC AAC C C C C T GG AGAAGAAG CTCTTTGCCT
GGGACAACTTGAACATGGTCACTTATGACATCAAGCTCTCCAAGATGTGAAAAGCCTCCAAG
CTGTACAGGCAATGGCAGAAGGAGATGCTCAGGGCTCCTGGGGGGAGCAGGCTGAAGGGAGA GCCAGCCAGCCAGGGCCCAGGCAGCTTTGACTGCTTTCCAAGTTTTCATTAATCCAGAAGGA TGAACATGGTCACCATCTAACTATTCAGGAATTGTAGTCTGAGGGCGTAGACAATTTCATAT AATAAATATCCTTTATCTTCTGTCAGCATTTATGGGATGTTTAATGACATAGTTCAAGTTTT CTTGTGATTTGGGGCAAAAGCTGTAAGGCATAATAGTTTCTTCCTGAAAACCATTGCTCTTG CATGTTACATGGTTACCACAAGCCACAATAAAAAGCATAACTTCTAAAGGAAGCAGAATAGC TCCTCTGGCCAGCATCGAATATAAGTAAGATGCATTTACTACAGTTGGCTTCTAATGCTTCA GATAGAATACAGTTGGGTCTCACATAACCCTTTACATTGTGAAATAAAATTTTCTTACCCAA CGTTCTCTTCCTTGAACTTTGTGGGAATCTTTGCTTAAGAGAAGGATATAGATTCCAACCAT CAGGTAATTCCTTCAGGTTGGGAGATGTGATTGCAGGATGTTAAAGGTGGTGTGTGTGTGTG TGTGTGTGTGTGTAACTGAGAGGCTTGTGCCTGGTTTTGAGGTGCTGCCCAGGATGACGCCA AGCAAATAGCAGCATCCACACTTTCCCACCTCCATCTCCTGGTGCTCTCGGCACTACCGGAG CAATCTTTCCATCTCTCCCCTGAACCCACCCTCTATTCACCCTAACTCCACTTCAGTTTGCT TTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCT GGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGTTCCGCCTCCCAGGTTCACACCATTCTC CTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCTGGCTAATTTTT TTTTTTTCCAGTGAAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCT TGTCATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCA GCCCCTCCACTTCAGTTTTTATCTGTCATCAGGGGTATGAATTTTATAAGCCACAACCTCAG
G
(Template Construct 3; SEQ ID NO: 8864)
Table 24 below provides exemplary template nucleic acids. In an embodiment, the template nucleic acid includes the 5' homology arm and the 3' homology arm of a row from Table 24. In other embodiments, a 5' homology arm from the first column can be combined with a 3' homology arm from Table 24. In each embodiment, a combination of the 5' and 3' homology arms include a replacement sequence, which may be selected from cytosine (C), thymine (T) and
TTATTGACTACAACCCCCTGGAGAAGAAGCTCTTTGCCTGGGACAACTTGAACATGGTCACT TATGACATCAAGCTCTCCAA (SEQ ID NO: 8865).
Table 24
Figure imgf000589_0001
250 or more 250 or more
300 or more 300 or more
350 or more 350 or more
400 or more 400 or more
450 or more 450 or more
500 or more 500 or more
550 or more 550 or more
600 or more 600 or more
650 or more 650 or more
700 or more 700 or more
750 or more 750 or more
800 or more 800 or more
850 or more 850 or more
900 or more 900 or more
1000 or more 1000 or more
1100 or more 1100 or more
1200 or more 1200 or more
1300 or more 1300 or more
1400 or more 1400 or more
1500 or more 1500 or more
1600 or more 1600 or more
1700 or more 1700 or more
1800 or more 1800 or more
1900 or more 1900 or more
1200 or more 1200 or more
At least 50 but not long enough to At least 50 but not long enough to include a repeated element. include a repeated element.
At least 100 but not long enough to At least 100 but not long enough to include a repeated element. include a repeated element.
At least 150 but not long enough to At least 150 but not long enough to include a repeated element. include a repeated element.
5 to 100 nucleotides 5 to 100 nucleotides 10 to 150 nucleotides 10 to 150 nucleotides
20 to 150 nucleotides 20 to 150 nucleotides
Template Construct No. 1
Template Construct No. 2
Template Construct No. 3
It is contemplated herein that one or both homology arms may be shortened to avoid including certain sequence repeat elements, e.g., Alu repeats, LINE elements. For example, a 5' homology arm may be shortened to avoid a sequence repeat element. In other
embodiments, a 3' homology arm may be shortened to avoid a sequence repeat element. In some embodiments, both the 5' and the 3' homology arms may be shortened to avoid including certain sequence repeat elements.
It is contemplated herein that, in an embodiment, template nucleic acids for correcting a mutation may designed for use as a single- stranded oligonucleotide (ssODN). When using a ssODN, 5' and 3' homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length. Longer homology arms are also contemplated for ssODNs as improvements in oligonucleotide synthesis continue to be made. It is contemplated herein that, in an embodiment, Cas9 could potentially cleave donor constructs either prior to or following homology directed repair (e.g., homologous recombination), resulting in a possible non-homologous-end-joining event and further DNA sequence mutation at the chromosomal locus of interest. Therefore, to avoid cleavage of the donor sequence before and/or after Cas9-mediated homology directed repair, alternate versions of the donor sequence may be used where silent mutations are introduced. These silent mutations may disrupt Cas9 binding and cleavage, but not disrupt the amino acid sequence of the repaired gene.
In an embodiment, a single or dual nickase eaCas9 is used to cleave the target DNA near the site of the mutation, or signature, to be modified, e.g., replaced. While not wishing to be bound by theory, in an embodiment, it is believed that the Cas9 mediated break induces HDR with the template nucleic acid to replace the target DNA sequence with the template sequence. V.2 NHEJ Approaches for Gene Targeting
As described herein, nuclease-induced non-homologous end-joining (NHEJ) can be used to target gene-specific knockouts. Nuclease-induced NHEJ can also be used to remove (e.g., delete) sequence insertions in a gene of interest.
While not wishing to be bound by theory, it is believed that, in an embodiment, the genomic alterations associated with the methods described herein rely on nuclease-induced NHEJ and the error-prone nature of the NHEJ repair pathway. NHEJ repairs a double-strand break in the DNA by joining together the two ends; however, generally, the original sequence is restored only if two compatible ends, exactly as they were formed by the double- strand break, are perfectly ligated. The DNA ends of the double-strand break are frequently the subject of enzymatic processing, resulting in the addition or removal of nucleotides, at one or both strands, prior to rejoining of the ends. This results in the presence of insertion and/or deletion (indel) mutations in the DNA sequence at the site of the NHEJ repair. Two-thirds of these mutations typically alter the reading frame and, therefore, produce a non-functional protein. Additionally, mutations that maintain the reading frame, but which insert or delete a significant amount of sequence, can destroy functionality of the protein. This is locus dependent as mutations in critical functional domains are likely less tolerable than mutations in non-critical regions of the protein.
The indel mutations generated by NHEJ are unpredictable in nature; however, at a given break site certain indel sequences are favored and are over represented in the population, likely due to small regions of microhomology. The lengths of deletions can vary widely; most commonly in the 1-50 bp range, but they can easily reach greater than 100-200 bp. Insertions tend to be shorter and often include short duplications of the sequence immediately surrounding the break site. However, it is possible to obtain large insertions, and in these cases, the inserted sequence has often been traced to other regions of the genome or to plasmid DNA present in the cells.
Because NHEJ is a mutagenic process, it can also be used to delete small sequence motifs as long as the generation of a specific final sequence is not required. If a double- strand break is targeted near to a short target sequence, the deletion mutations caused by the NHEJ repair often span, and therefore remove, the unwanted nucleotides. For the deletion of larger DNA segments, introducing two double-strand breaks, one on each side of the sequence, can result in NHEJ between the ends with removal of the entire intervening sequence. Both of these approaches can be used to delete specific DNA sequences; however, the error-prone nature of NHEJ may still produce indel mutations at the site of repair. Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate NHEJ- mediated indels. NHEJ-mediated indels targeted to the gene, e.g., a coding region, e.g., an early coding region of a gene of interest can be used to knockout (i.e., eliminate expression of) a gene of interest. For example, early coding region of a gene of interest includes sequence immediately following a transcription start site, within a first exon of the coding sequence, or within 500 bp of the transcription start site (e.g., less than 500, 450, 400, 350, 300, 250, 200, 150, 100 or 50 bp).
Placement of double strand or single strand breaks relative to the target position
In an embodiment, in which a gRNA and Cas9 nuclease generate a double strand break for the purpose of inducing NHEJ-mediated indels, a gRNA, e.g., a unimolecular (or chimeric) or modular gRNA molecule, is configured to position one double-strand break in close proximity to a nucleotide of the target position. In an embodiment, the cleavage site is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position).
In an embodiment, in which two gRNAs complexing with Cas9 nickases induce two single strand breaks for the purpose of inducing NHEJ-mediated indels, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position two single-strand breaks to provide for NHEJ repair a nucleotide of the target position. In an embodiment, the gRNAs are configured to position cuts at the same position, or within a few nucleotides of one another, on different strands, essentially mimicking a double strand break. In an embodiment, the closer nick is between 0-30 bp away from the target position (e.g., less than 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 bp from the target position), and the two nicks are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp). In an embodiment, the gRNAs are configured to place a single strand break on either side of a nucleotide of the target position.
Both double strand cleaving eaCas9 molecules and single strand, or nickase, eaCas9 molecules can be used in the methods and compositions described herein to generate breaks both sides of a target position. Double strand or paired single strand breaks may be generated on both sides of a target position to remove the nucleic acid sequence between the two cuts (e.g., the region between the two breaks in deleted). In one embodiment, two gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double-strand break on both sides of a target position. In an alternate embodiment, three gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to position a double strand break (i.e., one gRNA complexes with a cas9 nuclease) and two single strand breaks or paired single stranded breaks (i.e., two gRNAs complex with Cas9 nickases) on either side of the target position. In another embodiment, four gRNAs, e.g., independently, unimolecular (or chimeric) or modular gRNA, are configured to generate two pairs of single stranded breaks (i.e., two pairs of two gRNAs complex with Cas9 nickases) on either side of the target position. The double strand break(s) or the closer of the two single strand nicks in a pair will ideally be within 0-500 bp of the target position (e.g., no more than 450, 400, 350, 300, 250, 200, 150, 100, 50 or 25 bp from the target position). When nickases are used, the two nicks in a pair are within 25-55 bp of each other (e.g., between 25 to 50, 25 to 45, 25 to 40, 25 to 35, 25 to 30, 50 to 55, 45 to 55, 40 to 55, 35 to 55, 30 to 55, 30 to 50, 35 to 50, 40 to 50 , 45 to 50, 35 to 45, or 40 to 45 bp) and no more than 100 bp away from each other (e.g., no more than 90, 80, 70, 60, 50, 40, 30, 20 or 10 bp).
V.3 Targeted Knockdown
Unlike CRISPR/Cas-mediated gene knockout, which permanently eliminates expression by mutating the gene at the DNA level, CRISPR/Cas knockdown allows for temporary reduction of gene expression through the use of artificial transcription factors. Mutating key residues in both DNA cleavage domains of the Cas9 protein (e.g. the DIOA and H840A mutations) results in the generation of a catalytically inactive Cas9 (eiCas9 which is also known as dead Cas9 or dCas9) molecule. A catalytically inactive Cas9 complexes with a gRNA and localizes to the DNA sequence specified by that gRNA's targeting domain, however, it does not cleave the target DNA. Fusion of the dCas9 to an effector domain, e.g., a transcription repression domain, enables recruitment of the effector to any DNA site specified by the gRNA. Although an enzymatically inactive (eiCas9) Cas9 molecule itself can block transcription when recruited to early regions in the coding sequence, more robust repression can be achieved by fusing a transcriptional repression domain (for example KRAB, SID or ERD) to the Cas9 molecule and recruiting it to the promoter region of a gene. It is likely that targeting DNAsel hypersensitive regions of the promoter may yield more efficient gene repression or activation because these regions are more likely to be accessible to the Cas9 protein and are also more likely to harbor sites for endogenous transcription factors. Especially for gene repression, it is contemplated herein that blocking the binding site of an endogenous transcription factor would aid in downregulating gene expression. In an embodiment, one or more eiCas9 molecules may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 molecule can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. In an embodiment, one or more eiCas9 molecules may be used to block binding of one or more endogenous transcription factors. In another embodiment, an eiCas9 molecule can be fused to a chromatin modifying protein. Altering chromatin status can result in decreased expression of the target gene. One or more eiCas9 molecules fused to one or more chromatin modifying proteins may be used to alter chromatin status.
In an embodiment, a gRNA molecule can be targeted to a known transcription response elements (e.g., promoters, enhancers, etc.), a known upstream activating sequences (UAS), and/or sequences of unknown or known function that are suspected of being able to control expression of the target DNA.
CRISPR/Cas-mediated gene knockdown can be used to reduce expression of an unwanted allele or transcript. Contemplated herein are scenarios wherein permanent destruction of the gene is not ideal. In these scenarios, site-specific repression may be used to temporarily reduce or eliminate expression. It is also contemplated herein that the off-target effects of a Cas-repressor may be less severe than those of a Cas-nuclease as a nuclease can cleave any DNA sequence and cause mutations whereas a Cas-repressor may only have an effect if it targets the promoter region of an actively transcribed gene. However, while nuclease-mediated knockout is permanent, repression may only persist as long as the Cas- repressor is present in the cells. Once the repressor is no longer present, it is likely that endogenous transcription factors and gene regulatory elements would restore expression to its natural state. V.4 Single-Strand Annealing
Single strand annealing (SSA) is another DNA repair process that repairs a double- strand break between two repeat sequences present in a target nucleic acid. Repeat sequences utilized by the SSA pathway are generally greater than 30 nucleotides in length. Resection at the break ends occurs to reveal repeat sequences on both strands of the target nucleic acid. After resection, single strand overhangs containing the repeat sequences are coated with RPA protein to prevent the repeats sequences from inappropriate annealing, e.g., to themselves. RAD52 binds to and each of the repeat sequences on the overhangs and aligns the sequences to enable the annealing of the complementary repeat sequences. After annealing, the single- strand flaps of the overhangs are cleaved. New DNA synthesis fills in any gaps, and ligation restores the DNA duplex. As a result of the processing, the DNA sequence between the two repeats is deleted. The length of the deletion can depend on many factors including the location of the two repeats utilized, and the pathway or processivity of the resection.
In contrast to HDR pathways, SSA does not require a template nucleic acid to alter or correct a target nucleic acid sequence. Instead, the complementary repeat sequence is utilized.
V. 5 Other DNA Repair Pathways
SSBR (single strand break repair)
Single- stranded breaks (SSB) in the genome are repaired by the SSBR pathway, which is a distinct mechanism from the DSB repair mechanisms discussed above. The SSBR pathway has four major stages: SSB detection, DNA end processing, DNA gap filling, and DNA ligation. A more detailed explanation is given in Caldecott, Nature Reviews Genetics 9, 619-631 (August 2008), and a summary is given here.
In the first stage, when a SSB forms, PARP1 and/or PARP2 recognize the break and recruit repair machinery. The binding and activity of PARP1 at DNA breaks is transient and it seems to accelerate SSBr by promoting the focal accumulation or stability of SSBr protein complexes at the lesion. Arguably the most important of these SSBr proteins is XRCC1, which functions as a molecular scaffold that interacts with, stabilizes, and stimulates multiple enzymatic components of the SSBr process including the protein responsible for cleaning the DNA 3' and 5' ends. For instance, XRCC1 interacts with several proteins (DNA polymerase beta, PNK, and three nucleases, APE1, APTX, and APLF) that promote end processing. APE1 has endonuc lease activity. APLF exhibits endonuclease and 3' to 5' exonuclease activities. APTX has endonuclease and 3' to 5' exonuclease activity.
This end processing is an important stage of SSBR since the 3' - and/or 5 '-termini of most, if not all, SSBs are 'damaged'. End processing generally involves restoring a damaged 3 '-end to a hydroxylated state and and/or a damaged 5' end to a phosphate moiety, so that the ends become ligation-competent. Enzymes that can process damaged 3 ' termini include PNKP, APE1, and TDP1. Enzymes that can process damaged 5' termini include PNKP, DNA polymerase beta, and APTX. LIG3 (DNA ligase III) can also participate in end processing. Once the ends are cleaned, gap filling can occur.
At the DNA gap filling stage, the proteins typically present are PARP1, DNA polymerase beta, XRCC1, FEN1 (flap endonculease 1), DNA polymerase delta/epsilon, PCNA, and LIG1. There are two ways of gap filling, the short patch repair and the long patch repair. Short patch repair involves the insertion of a single nucleotide that is missing. At some SSBs, "gap filling" might continue displacing two or more nucleotides
(displacement of up to 12 bases have been reported). FEN1 is an endonuclease that removes the displaced 5 '-residues. Multiple DNA polymerases, including Pol β , are involved in the repair of SSBs, with the choice of DNA polymerase influenced by the source and type of SSB.
In the fourth stage, a DNA ligase such as LIG1 (Ligase I) or LIG3 (Ligase III) catalyzes joining of the ends. Short patch repair uses Ligase III and long patch repair uses Ligase I.
Sometimes, SSBR is replication-coupled. This pathway can involve one or more of CtIP, MRN, ERCC1, and FEN1. Additional factors that may promote SSBR include:
aPARP, PARP1, PARP2, PARG, XRCC1, DNA polymerase b, DNA polymerase d, DNA polymerase e, PCNA, LIG1, PNK, PNKP, APE1, APTX, APLF, TDP1, LIG3, FEN1, CtIP, MRN, and ERCC1. MMR (mismatch repair)
Cells contain three excision repair pathways: MMR, BER, and NER. The excision repair pathways hace a common feature in that they typically recognize a lesion on one strand of the DNA, then exo/endonucleaseases remove the lesion and leave a 1-30 nucleotide gap that is sub- sequentially filled in by DNA polymerase and finally sealed with ligase. A more complete picture is given in Li, Cell Research (2008) 18:85-98, and a summary is provided here.
Mismatch repair (MMR) operates on mispaired DNA bases.
The MSH2/6 or MSH2/3 complexes both have ATPases activity that plays an important role in mismatch recognition and the initiation of repair. MSH2/6 preferentially recognizes base-base mismatches and identifies mispairs of 1 or 2 nucleotides, while MSH2/3 preferentially recognizes larger ID mispairs.
hMLHl heterodimerizes with hPMS2 to form hMutL which possesses an ATPase activity and is important for multiple steps of MMR. It possesses a PCNA/replication factor C (RFC)-dependent endonuclease activity which plays an important role in 3' nick-directed MMR involving EXOl. (EXOl is a participant in both HR and MMR.) It regulates termination of mismatch-provoked excision. Ligase I is the relevant ligase for this pathway. Additional factors that may promote MMR include: EXOl, MSH2, MSH3, MSH6, MLH1, PMS2, MLH3, DNA Pol d, RPA, HMGB1, RFC, and DNA ligase I. Base excision repair (BER)
The base excision repair (BER) pathway is active throughout the cell cycle; it is responsible primarily for removing small, non-helix-distorting base lesions from the genome. In contrast, the related Nucleotide Excision Repair pathway (discussed in the next section) repairs bulky helix-distorting lesions. A more detailed explanation is given in Caldecott, Nature Reviews Genetics 9, 619-631 (August 2008), and a summary is given here.
Upon DNA base damage, base excision repair (BER) is initiated and the process can be simplified into five major steps: (a) removal of the damaged DNA base; (b) incision of the subsequent a basic site; (c) clean-up of the DNA ends; (d) insertion of the correct nucleotide into the repair gap; and (e) ligation of the remaining nick in the DNA backbone. These last steps are similar to the SSBR.
In the first step, a damage-specific DNA glycosylase excises the damaged base through cleavage of the N-glycosidic bond linking the base to the sugar phosphate backbone. Then AP endonuclease- 1 (APE1) or bifunctional DNA glycosylases with an associated lyase activity incised the phosphodiester backbone to create a DNA single strand break (SSB). The third step of BER involves cleaning-up of the DNA ends. The fourth step in BER is conducted by Pol β that adds a new complementary nucleotide into the repair gap and in the final step XRCCl/Ligase III seals the remaining nick in the DNA backbone. This completes the short-patch BER pathway in which the majority (-80%) of damaged DNA bases are repaired. However, if the 5' -ends in step 3 are resistant to end processing activity, following one nucleotide insertion by Pol β there is then a polymerase switch to the replicative DNA polymerases, Pol δ/ε, which then add -2-8 more nucleotides into the DNA repair gap. This creates a 5' -flap structure, which is recognized and excised by flap endonuclease- 1 (FEN-1) in association with the processivity factor proliferating cell nuclear antigen (PCNA). DNA ligase I then seals the remaining nick in the DNA backbone and completes long-patch BER. Additional factors that may promote the BER pathway include: DNA glycosylase, APE1, Polb, Pold, Pole, XRCC1, Ligase III, FEN-1, PCNA, RECQL4, WRN, MYH, PNKP, and APTX.
Nucleotide excision repair (NER)
Nucleotide excision repair (NER) is an important excision mechanism that removes bulky helix-distorting lesions from DNA. Additional details about NER are given in Marteijn et al., Nature Reviews Molecular Cell Biology 15, 465-481 (2014), and a summary is given here. NER a broad pathway encompassing two smaller pathways: global genomic NER (GG- NER) and transcription coupled repair NER (TC-NER). GG-NER and TC-NER use different factors for recognizing DNA damage. However, they utilize the same machinery for lesion incision, repair, and ligation.
Once damage is recognized, the cell removes a short single- stranded DNA segment that contains the lesion. Endonuc leases XPF/ERCCl and XPG (encoded by ERCC5) remove the lesion by cutting the damaged strand on either side of the lesion, resulting in a single- strand gap of 22-30 nucleotides. Next, the cell performs DNA gap filling synthesis and ligation. Involved in this process are: PCNA, RFC, DNA Pol δ, DNA Pol ε or DNA Pol κ, and DNA ligase I or XRCCl/Ligase III. Replicating cells tend to use DNA pol ε and DNA ligase I, while non-replicating cells tend to use DNA Pol δ, DNA Pol κ, and the XRCC1/ Ligase III complex to perform the ligation step.
NER can involve the following factors: XPA-G, POLH, XPF, ERCC1, XPA-G, and LIG1. Transcription-coupled NER (TC-NER) can involve the following factors: CSA, CSB, XPB, XPD, XPG, ERCC1, and TTDA. Additional factors that may promote the NER repair pathway include XPA-G, POLH, XPF, ERCC1, XPA-G, LIG1, CSA, CSB, XPA, XPB, XPC, XPD, XPF, XPG, TTDA, UVSSA, USP7, CETN2, RAD23B, UV-DDB, CAK subcomplex, RPA, and PCNA.
Interstrand Crosslink (ICL)
A dedicated pathway called the ICL repair pathway repairs interstrand crosslinks. Interstrand crosslinks, or covalent crosslinks between bases in different DNA strand, can occur during replication or transcription. ICL repair involves the coordination of multiple repair processes, in particular, nucleolytic activity, translesion synthesis (TLS), and HDR. Nucleases are recruited to excise the ICL on either side of the crosslinked bases, while TLS and HDR are coordinated to repair the cut strands. ICL repair can involve the following factors: endonucleases, e.g., XPF and RAD51C, endonucleases such as RAD51, translesion polymerases, e.g., DNA polymerase zeta and Revl), and the Fanconi anemia (FA) proteins, e.g., FancJ.
Other pathways
Several other DNA repair pathways exist in mammals. Translesion synthesis (TLS) is a pathway for repairing a single stranded break left after a defective replication event and involves translesion polymerases, e.g., DNA pol and Revl..
Error-free postreplication repair (PRR) is another pathway for repairing a single stranded break left after a defective replication event.
V.6 Examples of gRNAs in Genome Editing Methods
gRNA molecules as described herein can be used with Cas9 molecules that generate a double strand break or a single strand break to alter the sequence of a target nucleic acid, e.g., a target position or target genetic signature. gRNA molecules useful in these methods are described below.
In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
a) it can position, e.g., when targeting a Cas9 molecule that makes double strand breaks, a double strand break (i) within 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) it has a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
c)
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; (iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first
complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than l, 2, 3, 4, 5; 6, 7, 8, 9 or l0 nucleotides therefrom;
(iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and In an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
In an embodiment, the gRNA is configured such that it comprises properties: a and c. In an embodiment, the gRNA is configured such that in comprises properties: a, b, and c.
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(ii). In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
In an embodiment, the gRNA, e.g., a chimeric gRNA, is configured such that it comprises one or more of the following properties;
a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides; and
c)
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than l, 2, 3, 4, 5; 6, 7, 8, 9 or l0 nucleotides therefrom;
(iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain.
In an embodiment, the gRNA is configured such that it comprises properties: a and b(i).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(iv). In an embodiment, the gRNA is configured such that it comprises properties: a and b(v).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vi).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(vii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(viii).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(ix).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(x).
In an embodiment, the gRNA is configured such that it comprises properties: a and b(xi).
In an embodiment, the gRNA is configured such that it comprises properties: a and c.
In an embodiment, the gRNA is configured such that in comprises properties: a, b, and c.
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(i), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(iv), and c(ii). In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(v), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vi), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(vii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(viii), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(ix), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(x), and c(ii).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(i).
In an embodiment, the gRNA is configured such that in comprises properties: a(i), b(xi), and c(ii).
In an embodiment, the gRNA is used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation.
In an embodiment, the gRNA is used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at 840, e.g., the H840A. In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at N863, e.g., the N863A mutation.
In an embodiment, a pair of gRNAs, e.g., a pair of chimeric gRNAs, comprising a first and a second gRNA, is configured such that they comprises one or more of the following properties;
a) one or both of the gRNAs can position, e.g., when targeting a Cas9 molecule that makes single strand breaks, a single strand break within (i) 50, 100, 150, 200, 250, 300, 350, 400, 450, or 500 nucleotides of a target position, or (ii) sufficiently close that the target position is within the region of end resection;
b) one or both have a targeting domain of at least 16 nucleotides, e.g., a targeting domain of (i) 16, (ii), 17, (iii) 18, (iv) 19, (v) 20, (vi) 21, (vii) 22, (viii) 23, (ix) 24, (x) 25, or (xi) 26 nucleotides;
c) for one or both:
(i) the proximal and tail domain, when taken together, comprise at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail and proximal domain, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(ii) there are at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides 3' to the last nucleotide of the second complementarity domain, e.g., at least 15, 18, 20, 25, 30, 31, 35, 40, 45, 49, 50, or 53 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S.
thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom;
(iii) there are at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides 3' to the last nucleotide of the second complementarity domain that is complementary to its corresponding nucleotide of the first complementarity domain, e.g., at least 16, 19, 21, 26, 31, 32, 36, 41, 46, 50, 51, or 54 nucleotides from the corresponding sequence of a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis gRNA, or a sequence that differs by no more than l, 2, 3, 4, 5; 6, 7, 8, 9 or l0 nucleotides therefrom; (iv) the tail domain is at least 10, 15, 20, 25, 30, 35 or 40 nucleotides in length, e.g., it comprises at least 10, 15, 20, 25, 30, 35 or 40 nucleotides from a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain; or, or a sequence that differs by no more than 1, 2, 3, 4, 5; 6, 7, 8, 9 or 10 nucleotides therefrom; or
(v) the tail domain comprises 15, 20, 25, 30, 35, 40 nucleotides or all of the corresponding portions of a naturally occurring tail domain, e.g., a naturally occurring S. pyogenes, S. thermophilus, S. aureus, or N. meningitidis tail domain;
d) the gRNAs are configured such that, when hybridized to target nucleic acid, they are separated by 0-50, 0-100, 0-200, at least 10, at least 20, at least 30 or at least 50 nucleotides;
e) the breaks made by the first gRNA and second gRNA are on different strands; and f) the PAMs are facing outwards.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(iv).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(v).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vi).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(vii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(viii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(ix).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(x). In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a and b(xi).
In an embodiment, one or both of the gRNAs configured such that it comprises properties: a and c.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a, b, and c.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(i), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, and e. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(iv), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(v), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vi), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(i). In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(vii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(viii), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(ix), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and d. In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(x), c, d, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(i).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), and c(ii).
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and d.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, and e.
In an embodiment, one or both of the gRNAs is configured such that it comprises properties: a(i), b(xi), c, d, and e.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having HNH activity, e.g., a Cas9 molecule having the RuvC activity inactivated, e.g., a Cas9 molecule having a mutation at D10, e.g., the D10A mutation.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at H840, e.g., the H840A mutation.
In an embodiment, the gRNAs are used with a Cas9 nickase molecule having RuvC activity, e.g., a Cas9 molecule having the HNH activity inactivated, e.g., a Cas9 molecule having a mutation at N863, e.g., the N863A mutation.
VI. Target Cells
Cas9 molecules, gRNA molecules (e.g., a Cas9 molecule/gRNA molecule complex), and donor nucleic acids can be used to manipulate a cell, e.g., to edit a target nucleic acid, in a wide variety of cells.
In an embodiment, a cell is manipulated by editing (e.g., correcting) the MYOC target gene, e.g., as described herein. In an embodiment, the expression of the MYOC target gene is modulated, e.g., in vivo. In another embodiment, the expression of the MYOC target gene is modulated, e.g., ex vivo. The Cas9 and gRNA molecules described herein can be delivered to a target cell. In an embodiment, the target cell is a cell from the eye, e.g., a trabecular meshwork cell, retinal pigment epithelial cell, a retinal cell, an iris cell, a ciliary body cell and/or the optic nerve. In an embodiment, the target cell is a trabecular meshwork cell. In an embodiment, the target cell is a retinal cell, e.g., a cell of the retinal pigment epithelium or a photoreceptor cell. In an embodiment, the target cell is a cone photoreceptor cell or cone cell, a rod photoreceptor cell or rod cell, or a macular cone photoreceptor cell. In an embodiment, cone photoreceptors in the macular are targeted, i.e., cone photoreceptors in the macular are the target cells.
In an embodiment, the target cell is removed from the subject, the mutation corrected ex vivo, and the cell returned to the subject. In an embodiment, a photoreceptor cell is removed from the subject, the mutation corrected ex vivo, and the photoreceptor cell is returned to the subject. In an embodiment, a cone photoreceptor cell is removed from the subject, the mutation corrected ex vivo, and the cone photoreceptor cell is returned to the subject. In an embodiment, a trabecular meshwork cell is removed from the subject, the mutation corrected ex vivo, and the trabecular meshwork cell is returned to the subject.
In an embodiment, the cells are induced pluripotent stem cells (iPS) cells or cells derived from iPS cells, e.g., iPS cells from the subject, modified to alter the gene and differentiated into trabecular meshwork cells, retinal progenitor cells or retinal cells, e.g., retinal photoreceptors, and injected into the eye of the subject, e.g., into the trabecular meshwork, or, e.g., subretinally, e.g., in the submacular region of the retina.
In an embodiment, the cells are targeted in vivo, e.g., by delivery of the components, e.g., a Cas9 molecule and gRNA molecules, to the target cells. In an embodiment, the target cells are trabecular meshwork cells, retinal pigment epithelium or photoreceptor cells. In an embodiment, AAV is used to transduce the target cells.
VII. Delivery, Formulations and Routes of Administration
The components, e.g., a Cas9 molecule, gRNA molecule or template molecule, or all three, can be delivered, formulated or administered in a variety of forms, see, e.g., Tables 31- 32. In an embodiment, one Cas9 molecule and two or more (e.g., 2, 3, 4, or more) different gRNA molecules are delivered, e.g., by an AAV vector. In an embodiment, the sequence encoding the Cas9 molecule and the sequence(s) encoding the two or more (e.g., 2, 3, 4, or more) different gRNA molecules are present on the same nucleic acid molecule, e.g., an AAV vector. When a Cas9 or gRNA component is encoded as DNA for delivery, the DNA will typically, but not necessarily, include a control region, e.g., comprising a promoter, to effect expression. Useful promoters for Cas9 molecule sequences include CMV, EFS, EF-la, MSCV, PGK, CAG control promoters. In an embodiment, the promoter is a constitutive promoter. In another embodiment, the promoter is a tissue specific promoter. Useful promoters for gRNAs include HI, 7SK, tRNA and U6 promoters. Promoters with similar or dissimilar strengths can be selected to tune the expression of components. Sequences encoding a Cas9 molecule can comprise a nuclear localization signal (NLS), e.g., an SV40 NLS. In an embodiment, the sequence encoding a Cas9 molecule comprises at least two nuclear localization signals. In an embodiment a promoter for a Cas9 molecule or a gRNA molecule can be, independently, inducible, tissue specific, or cell specific.
Table 31 provides examples of how the components can be formulated, delivered, or administered.
Table 31
Elements
Cas9 gRNA Donor Comments
Molecule(s) Molecule(s) Template
Nucleic Acid
DNA DNA DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, and a gRNA are transcribed from DNA. In this embodiment, they are encoded on separate molecules. In this embodiment, the donor template is provided as a separate DNA molecule.
DNA DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, and a gRNA are transcribed from DNA. In this embodiment, they are encoded on separate molecules. In this embodiment, the donor template is provided on the same DNA molecule that encodes the gRNA.
DNA DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, and a gRNA are transcribed from DNA, here from a single molecule. In this embodiment, the donor template is provided as a separate DNA molecule.
DNA 1 DNA 1 DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, and a gRNA are transcribed from DNA. In this embodiment, they are encoded on separate molecules. In this embodiment, the donor template is provided on the same DNA molecule that encodes the Cas9.
DNA RNA DNA In this embodiment, a Cas9 molecule, typically an eaCas9 molecule, is transcribed from DNA, and a gRNA is provided as in vitro transcribed or synthesized RNA. In this embodiment, the donor template is provided as a separate DNA molecule.
DNA RNA 1 DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, is transcribed from DNA, and a gRNA is provided as in vitro transcribed or synthesized RNA. In this embodiment, the donor template is provided on the same DNA molecule that encodes the Cas9.
mRNA RNA DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, is translated from in vitro transcribed mRNA, and a gRNA is provided as in vitro transcribed or synthesized RNA. In this embodiment, the donor template is provided as a DNA molecule.
mRNA DNA DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, is translated from in vitro transcribed mRNA, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided as a separate DNA molecule.
mRNA DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, is translated from in vitro transcribed mRNA, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided on the same DNA molecule that encodes the gRNA.
Protein DNA DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, is provided as a protein, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided as a separate DNA molecule.
Protein DNA In this embodiment, a Cas9 molecule,
typically an eaCas9 molecule, is provided as a protein, and a gRNA is transcribed from DNA. In this embodiment, the donor template is provided on the same DNA molecule that encodes the gRNA.
Protein RNA DNA In this embodiment, an eaCas9 molecule is provided as a protein, and a gRNA is provided as transcribed or synthesized RNA. In this embodiment, the donor template is provided as a DNA molecule. Table 32 summarizes various delivery methods for the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, as described herein. Table 32
Figure imgf000616_0001
DNA-based Delivery of a Cas9 molecule and/or one or more gRNA molecule Nucleic acids encoding Cas9 molecules (e.g., eaCas9 molecules), gRNA molecules, a donor template nucleic acid, or any combination (e.g., two or all) thereof, can be
administered to subjects or delivered into cells by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding DNA can be delivered, e.g., by vectors (e.g., viral or non-viral vectors), non-vector based methods (e.g., using naked DNA or DNA complexes), or a combination thereof.
Nucleic acids encoding Cas9 molecules (e.g., eaCas9 molecules) and/or gRNA molecules can be conjugated to molecules promoting uptake by the target cells (e.g., the target cells described herein). Donor template molecules can be conjugated to molecules promoting uptake by the target cells (e.g., the target cells described herein).
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a vector (e.g., viral vector/virus or plasmid).
A vector can comprise a sequence that encodes a Cas9 molecule and/or a gRNA molecule. A vector can also comprise a sequence encoding a signal peptide (e.g., for nuclear localization, nucleolar localization, mitochondrial localization), fused, e.g., to a Cas9 molecule sequence. For example, ae vector can comprise a nuclear localization sequence (e.g., from SV40) fused to the sequence encoding the Cas9 molecule.
One or more regulatory/control elements, e.g., a promoter, an enhancer, an intron, a polyadenylation signal, a Kozak consensus sequence, internal ribosome entry sites (IRES), a 2A sequence, and splice acceptor or donor can be included in the vectors. In some embodiments, the promoter is recognized by RNA polymerase II (e.g., a CMV promoter). In other embodiments, the promoter is recognized by RNA polymerase III (e.g., a U6 promoter). In some embodiments, the promoter is a regulated promoter (e.g., inducible promoter). In other embodiments, the promoter is a constitutive promoter. In some embodiments, the promoter is a tissue specific promoter. In some embodiments, the promoter is a viral promoter. In other embodiments, the promoter is a non- viral promoter.
In some embodiments, the vector or delivery vehicle is a viral vector (e.g., for generation of recombinant viruses). In some embodiments, the virus is a DNA virus (e.g., dsDNA or ssDNA virus). In another embodiment, the virus is an RNA virus (e.g., an ssRNA virus). In some embodiments, the virus infects dividing cells. In other embodiments, the virus infects non-dividing cells. Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses. In some embodiments, the virus infects dividing cells. In other embodiments, the virus infects non-dividing cells. In some embodiments, the virus infects both dividing and non-dividing cells. In some embodiments, the virus can integrate into the host genome. In some embodiments, the virus is engineered to have reduced immunity, e.g., in human. In some embodiments, the virus is replication-competent. In another embodiment, the virus is replication-defective, e.g., having one or more coding regions for the genes necessary for additional rounds of virion replication and/or packaging replaced with other genes or deleted. In some embodiments, the virus causes transient expression of the Cas9 molecule and/or the gRNA molecule. In other embodiments, the virus causes long-lasting, e.g., at least 1 week, 2 weeks, 1 month, 2 months, 3 months, 6 months, 9 months, 1 year, 2 years, or permanent expression, of the Cas9 molecule and/or the gRNA molecule. The packaging capacity of the viruses may vary, e.g., from at least about 4 kb to at least about 30 kb, e.g., at least about 5 kb, 10 kb, 15 kb, 20 kb, 25 kb, 30 kb, 35 kb, 40 kb, 45 kb, or 50 kb.
In an embodiment, the viral vector recognizes a specific cell type or tissue. For example, the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., genetic modification(s) of one or more viral envelope glycoproteins to incorporate a targeting ligand such as a peptide ligand, a single chain antibody, or a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., a ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
Exemplary viral vectors/viruses include, e.g., retroviruses, lentiviruses, adenovirus, adeno-associated virus (AAV), vaccinia viruses, poxviruses, and herpes simplex viruses.
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant retrovirus. In some embodiments, the retrovirus (e.g., Moloney murine leukemia virus) comprises a reverse transcriptase, e.g., that allows integration into the host genome. In some embodiments, the retrovirus is replication-competent. In other embodiments, the retrovirus is replication-defective, e.g., having one of more coding regions for the genes necessary for additional rounds of virion replication and packaging replaced with other genes, or deleted.
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant lentivirus. For example, the lentivirus is replication-defective, e.g., does not comprise one or more genes required for viral replication. In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant adenovirus. In some embodiments, the adenovirus is engineered to have reduced immunity in human.
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a recombinant AAV. In some embodiments, the AAV does not incorporate its genome into that of a host cell, e.g., a target cell as describe herein. In some embodiments, the AAV can incorporate at least part of its genome into that of a host cell, e.g., a target cell as described herein. In some embodiments, the AAV is a self-complementary adeno-associated virus (scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA. AAV serotypes that may be used in the disclosed methods, include AAV1, AAV2, modified AAV2 (e.g., modifications at Y444F, Y500F, Y730F and/or S662V), AAV3, modified AAV3 (e.g., modifications at Y705F, Y731F and/or T492V), AAV4, AAV5, AAV6, modified AAV6 (e.g., modifications at S663V and/or T492V), AAV8, AAV 8.2, AAV9, AAV rh 10, and pseudotyped AAV, such as AAV2/8, AAV2/5 and AAV2/6 can also be used in the disclosed methods. In an embodiment, an AAV capsid that can be used in the methods described herein is a capsid sequence from serotype AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rhlO, AAV.rh32/33, AAV.rh43, AAV.rh64Rl, or AAV7m8.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered in a re- engineered AAV capsid, e.g., with 50% or greater, e.g., 60% or greater, 70% or greater, 80% or greater, 90% or greater, or 95% or greater, sequence homology with a capsid sequence from serotypes AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV.rh8, AAV.rhlO, AAV.rh32/33, AAV.rh43, or AAV.rh64Rl.
In an embodiment, the Cas9- and/or gRNA-encoding DNA is delivered by a chimeric AAV capsid. Exemplary chimeric AAV capsids include, but are not limited to, AAV9il, AAV2i8, AAV-DJ, AAV2G9, AAV2i8G9, or AAV8G9.
In an embodiment, the AAV is a self-complementary adeno-associated virus
(scAAV), e.g., a scAAV that packages both strands which anneal together to form double stranded DNA.
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a hybrid virus, e.g., a hybrid of one or more of the viruses described herein. In an embodiment, the hybrid virus is hybrid of an AAV (e.g., of any AAV serotype), with a Bocavirus, B19 virus, porcine AAV, goose AAV, feline AAV, canine AAV, or MVM. A Packaging cell is used to form a virus particle that is capable of infecting a host or target cell. Such a cell includes a 293 cell, which can package adenovirus, and a ψ2 cell or a PA317 cell, which can package retrovirus. A viral vector used in gene therapy is usually generated by a producer cell line that packages a nucleic acid vector into a viral particle. The vector typically contains the minimal viral sequences required for packaging and subsequent integration into a host or target cell (if applicable), with other viral sequences being replaced by an expression cassette encoding the protein to be expressed. For example, an AAV vector used in gene therapy typically only possesses inverted terminal repeat (ITR) sequences from the AAV genome which are required for packaging and gene expression in the host or target cell. The missing viral functions can be supplied in trans by the packaging cell line and/or plasmid containing E2A, E4, and VA genes from adenovirus, and plasmid encoding Rep and Cap genes from AAV, as described in "Triple Transfection Protocol." Henceforth, the viral DNA is packaged in a cell line, which contains a helper plasmid encoding the other AAV genes, namely rep and cap, but lacking ITR sequences. In embodiment, the viral DNA is packaged in a producer cell line, which contains E1A and/or E1B genes from adenovirus.
The cell line is also infected with adenovirus as a helper. The helper virus (e.g., adenovirus or HSV) or helper plasmid promotes replication of the AAV vector and expression of AAV genes from the helper plasmid with ITRs. The helper plasmid is not packaged in significant amounts due to a lack of ITR sequences. Contamination with adenovirus can be reduced by, e.g., heat treatment to which adenovirus is more sensitive than AAV.
In an embodiment, the viral vector has the ability of cell type and/or tissue type recognition. For example, the viral vector can be pseudotyped with a different/alternative viral envelope glycoprotein; engineered with a cell type-specific receptor (e.g., genetic modification of the viral envelope glycoproteins to incorporate targeting ligands such as a peptide ligand, a single chain antibody, a growth factor); and/or engineered to have a molecular bridge with dual specificities with one end recognizing a viral glycoprotein and the other end recognizing a moiety of the target cell surface (e.g., ligand-receptor, monoclonal antibody, avidin-biotin and chemical conjugation).
In an embodiment, the viral vector achieves cell type specific expression. For example, a tissue-specific promoter can be constructed to restrict expression of the transgene (Cas 9 and gRNA) in only the target cell. The specificity of the vector can also be mediated by microRNA-dependent control of transgene expression. In an embodiment, the viral vector has increased efficiency of fusion of the viral vector and a target cell membrane. For example, a fusion protein such as fusion-competent hemagglutin (HA) can be incorporated to increase viral uptake into cells. In an embodiment, the viral vector has the ability of nuclear localization. For example, a virus that requires the breakdown of the nuclear envelope (during cell division) and therefore will not infect a non-diving cell can be altered to incorporate a nuclear localization peptide in the matrix protein of the virus thereby enabling the transduction of non-proliferating cells.
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a non- vector based method (e.g., using naked DNA or DNA complexes). For example, the DNA can be delivered, e.g., by organically modified silica or silicate (Ormosil), electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al., Nano Lett 12: 6322- 27), gene gun, sonoporation, magnetofection, lipid-mediated transfection, dendrimers, inorganic nanoparticles, calcium phosphates, or a combination thereof.
In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9-and/or gRNA-encoding DNA in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9-and/or gRNA-encoding DNA in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel.
In some embodiments, the Cas9- and/or gRNA-encoding DNA is delivered by a combination of a vector and a non- vector based method. In an embodiment, the donor template nucleic acid is delivered by a combination of a vector and a non- vector based method For example, a virosome comprises a liposome combined with an inactivated virus (e.g., HIV or influenza virus), which can result in more efficient gene transfer, e.g., in a respiratory epithelial cell than either a viral or a liposomal method alone.
In an embodiment, the delivery vehicle is a non- viral vector. In an embodiment, the non- viral vector is an inorganic nanoparticle (e.g., attached to the payload to the surface of the nanoparticle). Exemplary inorganic nanoparticles include, e.g., magnetic nanoparticles (e.g., Fe3Mn02), or silica. The outer surface of the nanoparticle can be conjugated with a positively charged polymer (e.g., polyethylenimine, polylysine, polyserine) which allows for attachment (e.g., conjugation or entrapment) of payload. In an embodiment, the non-viral vector is an organic nanoparticle (e.g., entrapment of the payload inside the nanoparticle). Exemplary organic nanoparticles include, e.g., SNALP liposomes that contain cationic lipids together with neutral helper lipids which are coated with polyethylene glycol (PEG) and protamine and nucleic acid complex coated with lipid coating. Exemplary lipids for gene transfer are shown below in Table 33.
Table 33: Lipids Used for Gene Transfer
Figure imgf000622_0001
Exemplary polymers for gene transfer are shown below in Table 34.
Table 34: Polymers Used for Gene Transfer
Figure imgf000623_0001
In an embodiment, the vehicle has targeting modifications to increase target cell update of nanoparticles and liposomes, e.g., cell specific antigens, monoclonal antibodies, single chain antibodies, aptamers, polymers, sugars and cell penetrating peptides. In an embodiment, the vehicle uses fusogenic and endosome-destabilizing peptides/polymers. In an embodiment, the vehicle undergoes acid-triggered conformational changes (e.g., to accelerate endosomal escape of the cargo). In an embodiment, a stimuli-cleavable polymer is used, e.g., for release in a cellular compartment. For example, disulfide-based cationic polymers that are cleaved in the reducing cellular environment can be used. In an embodiment, the delivery vehicle is a biological non- viral delivery vehicle. In an embodiment, the vehicle is an attenuated bacterium (e.g., naturally or artificially engineered to be invasive but attenuated to prevent pathogenesis and expressing the transgene (e.g., Listeria monocytogenes, certain Salmonella strains, Bifidobacterium longum, and modified Escherichia coli), bacteria having nutritional and tissue-specific tropism to target specific tissues, bacteria having modified surface proteins to alter target tissue specificity). In an embodiment, the vehicle is a genetically modified bacteriophage (e.g., engineered phages having large packaging capacity, less immunogenic, containing mammalian plasmid maintenance sequences and having incorporated targeting ligands). In an embodiment, the vehicle is a mammalian virus-like particle. For example, modified viral particles can be generated (e.g., by purification of the "empty" particles followed by ex vivo assembly of the virus with the desired cargo). The vehicle can also be engineered to incorporate targeting ligands to alter target tissue specificity. In an embodiment, the vehicle is a biological liposome. For example, the biological liposome is a phospholipid-based particle derived from human cells (e.g., erythrocyte ghosts, which are red blood cells broken down into spherical structures derived from the subject (e.g., tissue targeting can be achieved by attachment of various tissue or cell-specific ligands), or secretory exosomes -subject (i.e., patient) derived membrane-bound nanovescicle (30 -100 nm) of endocytic origin (e.g., can be produced from various cell types and can therefore be taken up by cells without the need of for targeting ligands).
In an embodiment, one or more nucleic acid molecules (e.g., DNA molecules) other than the components of a Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component described herein, are delivered. In an embodiment, the nucleic acid molecule is delivered at the same time as one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered before or after (e.g., less than about 30 minutes, 1 hour, 2 hours, 3 hours, 6 hours, 9 hours, 12 hours, 1 day, 2 days, 3 days, 1 week, 2 weeks, or 4 weeks) one or more of the components of the Cas system are delivered. In an embodiment, the nucleic acid molecule is delivered by a different means than one or more of the components of the Cas system, e.g., the Cas9 molecule component and/or the gRNA molecule component, are delivered. The nucleic acid molecule can be delivered by any of the delivery methods described herein. For example, the nucleic acid molecule can be delivered by a viral vector, e.g., an integration-deficient lentivirus, and the Cas9 molecule component and/or the gRNA molecule component can be delivered by electroporation, e.g., such that the toxicity caused by nucleic acids (e.g., DNAs) can be reduced. In an embodiment, the nucleic acid molecule encodes a therapeutic protein, e.g., a protein described herein. In an embodiment, the nucleic acid molecule encodes an RNA molecule, e.g., an RNA molecule described herein. Delivery of RNA encoding a Cas9 molecule
RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion proteins) and/or gRNA molecules, can be delivered into cells, e.g., target cells described herein, by art-known methods or as described herein. For example, Cas9-encoding and/or gRNA-encoding RNA can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al., Nano Lett 12: 6322- 27), lipid-mediated transfection, peptide-mediated delivery, or a combination thereof. Cas9- encoding and/or gRNA-encoding RNA can be conjugated to molecules promoting uptake by the target cells (e.g., target cells described herein).
In an embodiment, delivery via electroporation comprises mixing the cells with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor template nucleic acid molecules, in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the RNA encoding Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor template nucleic acid molecules in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules to promote uptake by the target cells (e.g., target cells described herein).
Delivery Cas9 molecule protein
Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion proteins) can be delivered into cells by art-known methods or as described herein. For example, Cas9 protein molecules can be delivered, e.g., by microinjection, electroporation, transient cell compression or squeezing (e.g., as described in Lee, et al., Nano Lett 12: 6322-27), lipid- mediated transfection, peptide-mediated delivery, or a combination thereof. Delivery can be accompanied by DNA encoding a gRNA or by a gRNA. Cas9 protein can be conjugated to molecules promoting uptake by the target cells (e.g., target cells described herein). In an embodiment, delivery via electroporation comprises mixing the cells with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor nucleic acid, in a cartridge, chamber or cuvette and applying one or more electrical impulses of defined duration and amplitude. In an embodiment, delivery via electroporation is performed using a system in which cells are mixed with the Cas9 molecules (e.g., eaCas9 molecules, eiCas9 molecules or eiCas9 fusion protiens) and/or gRNA molecules, with or without donor nucleic acid in a vessel connected to a device (eg, a pump) which feeds the mixture into a cartridge, chamber or cuvette wherein one or more electrical impulses of defined duration and amplitude are applied, after which the cells are delivered to a second vessel. Cas9-encoding and/or gRNA-encoding RNA can be conjugated to molecules to promote uptake by the target cells (e.g., target cells described herein).
Route of Administration
Systemic modes of administration include oral and parenteral routes. Parenteral routes include, by way of example, intravenous, intrarterial, intraosseous, intramuscular, intradermal, subcutaneous, intranasal and intraperitoneal routes. Components administered systemically may be modified or formulated to target the components to the eye.
Local modes of administration include, by way of example, intraocular, intraorbital, subconjuctival, intravitreal, subretinal or transscleral routes, as well as delivery directly into the trabecular mesh work.. In an embodiment, significantly smaller amounts of the components (compared with systemic approaches) may exert an effect when administered locally (for example, intravitreally) compared to when administered systemically (for example, intravenously). Local modes of administration can reduce or eliminate the incidence of potentially toxic side effects that may occur when therapeutically effective amounts of a component are administered systemically.
In an embodiment, components described herein are delivered subretinally, e.g., by subretinal injection. Subretinal injections may be made directly into the macular, e.g., submacular injection.
In an embodiment, components described herein are delivered by intravitreal injection. Intravitreal injection has a relatively low risk of retinal detachment risk. In an embodiment, nanoparticle or viral, e.g., AAV vector, e.g., an AAV2 vector, e.g., a modified AAV2 vector, is delivered intravitreally.
Methods for administration of agents to the eye are known in the medical arts and can be used to administer components described herein. Exemplary methods include intraocular injection (e.g., retrobulbar, subretinal, submacular, intravitreal and intrachoridal), iontophoresis, eye drops, and intraocular implantation (e.g., intravitreal, sub-Tenons and subconjunctival).
Administration may be provided as a periodic bolus (for example, subretinally, intravenously or intravitreally) or as continuous infusion from an internal reservoir (for example, from an implant disposed at an intra- or extra-ocular location (see, U.S. Pat. Nos. 5,443,505 and 5,766,242)) or from an external reservoir (for example, from an intravenous bag). Components may be administered locally, for example, by continuous release from a sustained release drug delivery device immobilized to an inner wall of the eye or via targeted transscleral controlled release into the choroid (see, for example, PCT/USOO/00207, PCT/US02/14279, Ambati et al. (2000) INVEST. OPHTHALMOL. VIS. SCI.41:1181-1185, and Ambati et al. (2000) INVEST. OPHTHALMOL. VIS. SCI.41:1186-1191). A variety of devices suitable for administering components locally to the inside of the eye are known in the art. See, for example, U.S. Pat. Nos. 6,251,090, 6,299,895, 6,416,777, 6,413,540, and PCT/USOO/28187.
In addition, components may be formulated to permit release over a prolonged period of time. A release system can include a matrix of a biodegradable material or a material which releases the incorporated components by diffusion. The components can be homogeneously or heterogeneously distributed within the release system. A variety of release systems may be useful, however, the choice of the appropriate system will depend upon rate of release required by a particular application. Both non-degradable and degradable release systems can be used. Suitable release systems include polymers and polymeric matrices, non-polymeric matrices, or inorganic and organic excipients and diluents such as, but not limited to, calcium carbonate and sugar (for example, trehalose). Release systems may be natural or synthetic. However, synthetic release systems are preferred because generally they are more reliable, more reproducible and produce more defined release profiles. The release system material can be selected so that components having different molecular weights are released by diffusion through or degradation of the material.
Representative synthetic, biodegradable polymers include, for example: polyamides such as poly(amino acids) and poly(peptides); polyesters such as poly(lactic acid), poly(glycolic acid), poly(lactic-co-glycolic acid), and poly(caprolactone); poly(anhydrides); polyorthoesters; polycarbonates; and chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof. Representative synthetic, non-degradable polymers include, for example: polyethers such as poly(ethylene oxide), poly(ethylene glycol), and poly(tetramethylene oxide); vinyl polymers- polyacrylates and polymethacrylates such as methyl, ethyl, other alkyl, hydroxyethyl methacrylate, acrylic and methacrylic acids, and others such as poly(vinyl alcohol), poly(vinyl pyrolidone), and poly(vinyl acetate); poly(urethanes); cellulose and its derivatives such as alkyl, hydroxyalkyl, ethers, esters, nitrocellulose, and various cellulose acetates; polysiloxanes; and any chemical derivatives thereof (substitutions, additions of chemical groups, for example, alkyl, alkylene, hydroxylations, oxidations, and other modifications routinely made by those skilled in the art), copolymers and mixtures thereof.
Poly(lactide-co-glycolide) microsphere can also be used for intraocular injection. Typically the microspheres are composed of a polymer of lactic acid and glycolic acid, which are structured to form hollow spheres. The spheres can be approximately 15-30 microns in diameter and can be loaded with components described herein.
Bi-Modal or Differential Delivery of Components
Separate delivery of the components of a Cas system, e.g., the Cas9 molecule component and the gRNA molecule component, and more particularly, delivery of the components by differing modes, can enhance performance, e.g., by improving tissue specificity and safety.
In an embodiment, the Cas 9 molecule and the gRNA molecule are delivered by different modes, or as sometimes referred to herein as differential modes. Different or differential modes, as used herein, refer modes of delivery that confer different
pharmacodynamic or pharmacokinetic properties on the subject component molecule, e.g., a Cas9 molecule, gRNA molecule, or template nucleic acid. For example, the modes of delivery can result in different tissue distribution, different half-life, or different temporal distribution, e.g., in a selected compartment, tissue, or organ.
Some modes of delivery, e.g., delivery by a nucleic acid vector that persists in a cell, or in progeny of a cell, e.g., by autonomous replication or insertion into cellular nucleic acid, result in more persistent expression of and presence of a component. Examples include viral, e.g., adeno- associated virus or lentivirus, delivery.
By way of example, the components, e.g., a Cas9 molecule and a gRNA molecule, can be delivered by modes that differ in terms of resulting half-life or persistent of the delivered component the body, or in a particular compartment, tissue or organ. In an embodiment, a gRNA molecule can be delivered by such modes. The Cas9 molecule component can be delivered by a mode which results in less persistence or less exposure to the body or a particular compartment or tissue or organ.
More generally, in an embodiment, a first mode of delivery is used to deliver a first component and a second mode of delivery is used to deliver a second component. The first mode of delivery confers a first pharmacodynamic or pharmacokinetic property. The first pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ. The second mode of delivery confers a second pharmacodynamic or pharmacokinetic property. The second pharmacodynamic property can be, e.g., distribution, persistence, or exposure, of the component, or of a nucleic acid that encodes the component, in the body, a compartment, tissue or organ.
In an embodiment, the first pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure, is more limited than the second pharmacodynamic or pharmacokinetic property.
In an embodiment, the first mode of delivery is selected to optimize, e.g., minimize, a pharmacodynamic or pharmacokinetic property, e.g., distribution, persistence or exposure.
In an embodiment, the second mode of delivery is selected to optimize, e.g., maximize, a pharmacodynamic or pharmcokinetic property, e.g., distribution, persistence or exposure.
In an embodiment, the first mode of delivery comprises the use of a relatively persistent element, e.g., a nucleic acid, e.g., a plasmid or viral vector, e.g., an AAV or lentivirus. As such vectors are relatively persistent product transcribed from them would be relatively persistent.
In an embodiment, the second mode of delivery comprises a relatively transient element, e.g., an RNA or protein.
In an embodiment, the first component comprises gRNA, and the delivery mode is relatively persistent, e.g., the gRNA is transcribed from a plasmid or viral vector, e.g., an AAV or lentivirus. Transcription of these genes would be of little physiological consequence because the genes do not encode for a protein product, and the gRNAs are incapable of acting in isolation. The second component, a Cas9 molecule, is delivered in a transient manner, for example as mRNA or as protein, ensuring that the full Cas9 molecule/gRNA molecule complex is only present and active for a short period of time. Furthermore, the components can be delivered in different molecular form or with different delivery vectors that complement one another to enhance safety and tissue specificity.
Use of differential delivery modes can enhance performance, safety and efficacy. E.g., the likelihood of an eventual off-target modification can be reduced. Delivery of immunogenic components, e.g., Cas9 molecules, by less persistent modes can reduce immunogenicity, as peptides from the bacterially-derived Cas enzyme are displayed on the surface of the cell by MHC molecules. A two-part delivery system can alleviate these drawbacks.
Differential delivery modes can be used to deliver components to different, but overlapping target regions. The formation active complex is minimized outside the overlap of the target regions. Thus, in an embodiment, a first component, e.g., a gRNA molecule is delivered by a first delivery mode that results in a first spatial, e.g., tissue, distribution. A second component, e.g., a Cas9 molecule is delivered by a second delivery mode that results in a second spatial, e.g., tissue, distribution. In an embodiment, the first mode comprises a first element selected from a liposome, nanoparticle, e.g., polymeric nanoparticle, and a nucleic acid, e.g., viral vector. The second mode comprises a second element selected from the group. In an embodiment, the first mode of delivery comprises a first targeting element, e.g., a cell specific receptor or an antibody, and the second mode of delivery does not include that element. In embodiment, the second mode of delivery comprises a second targeting element, e.g., a second cell specific receptor or second antibody.
When the Cas9 molecule is delivered in a virus delivery vector, a liposome, or polymeric nanoparticle, there is the potential for delivery to and therapeutic activity in multiple tissues, when it may be desirable to only target a single tissue. A two-part delivery system can resolve this challenge and enhance tissue specificity. If the gRNA molecule and the Cas9 molecule are packaged in separated delivery vehicles with distinct but overlapping tissue tropism, the fully functional complex is only be formed in the tissue that is targeted by both vectors.
Ex vivo delivery
In some embodiments, components described in Table 31 are introduced into cells which are then introduced into the subject e.g., cells are removed from a subject, manipulated ex vivo and then introduced into the subject. Methods of introducing the components can include, e.g., any of the delivery methods described herein, e.g., any of the delivery methods described in Table 32.
VIII. Modified Nucleosides, Nucleotides, and Nucleic Acids
Modified nucleosides and modified nucleotides can be present in nucleic acids, e.g., particularly gRNA, but also other forms of RNA, e.g., mRNA, RNAi, or siRNA. As described herein, "nucleoside" is defined as a compound containing a five-carbon sugar molecule (a pentose or ribose) or derivative thereof, and an organic base, purine or pyrimidine, or a derivative thereof. As described herein, "nucleotide" is defined as a nucleoside further comprising a phosphate group.
Modified nucleosides and nucleotides can include one or more of:
(i) alteration, e.g., replacement, of one or both of the non-linking phosphate oxygens and/or of one or more of the linking phosphate oxygens in the phosphodiester backbone linkage;
(ii) alteration, e.g., replacement, of a constituent of the ribose sugar, e.g., of the 2' hydroxyl on the ribose sugar;
(iii) wholesale replacement of the phosphate moiety with "dephospho" linkers;
(iv) modification or replacement of a naturally occurring nucleobase;
(v) replacement or modification of the ribose-phosphate backbone;
(vi) modification of the 3' end or 5' end of the oligonucleotide, e.g., removal, modification or replacement of a terminal phosphate group or conjugation of a moiety; and (vii) modification of the sugar.
The modifications listed above can be combined to provide modified nucleosides and nucleotides that can have two, three, four, or more modifications. For example, a modified nucleoside or nucleotide can have a modified sugar and a modified nucleobase. In an embodiment, every base of a gRNA is modified, e.g., all bases have a modified phosphate group, e.g., all are phosphorothioate groups. In an embodiment, all, or substantially all, of the phosphate groups of a unimolecular or modular gRNA molecule are replaced with phosphorothioate groups.
In an embodiment, modified nucleotides, e.g., nucleotides having modifications as described herein, can be incorporated into a nucleic acid, e.g., a "modified nucleic acid." In some embodiments, the modified nucleic acids comprise one, two, three or more modified nucleotides. In some embodiments, at least 5% (e.g., at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, or about 100%) of the positions in a modified nucleic acid are a modified nucleotides.
Unmodified nucleic acids can be prone to degradation by, e.g., cellular nucleases. For example, nucleases can hydrolyze nucleic acid phosphodiester bonds. Accordingly, in one aspect the modified nucleic acids described herein can contain one or more modified nucleosides or nucleotides, e.g., to introduce stability toward nucleases.
In some embodiments, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo. The term "innate immune response" includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death. In some embodiments, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can disrupt binding of a major groove interacting partner with the nucleic acid. In some embodiments, the modified nucleosides, modified nucleotides, and modified nucleic acids described herein can exhibit a reduced innate immune response when introduced into a population of cells, both in vivo and ex vivo, and also disrupt binding of a major groove interacting partner with the nucleic acid.
Definitions of Chemical Groups
As used herein, "alkyl" is meant to refer to a saturated hydrocarbon group which is straight-chained or branched. Example alkyl groups include methyl (Me), ethyl (Et), propyl (e.g. , n-propyl and isopropyl), butyl (e.g. , n-butyl, isobutyl, t-butyl), pentyl (e.g. , n-pentyl, isopentyl, neopentyl), and the like. An alkyl group can contain from 1 to about 20, from 2 to about 20, from 1 to about 12, from 1 to about 8, from 1 to about 6, from 1 to about 4, or from 1 to about 3 carbon atoms.
As used herein, "aryl" refers to monocyclic or polycyclic (e.g. , having 2, 3 or 4 fused rings) aromatic hydrocarbons such as, for example, phenyl, naphthyl, anthracenyl, phenanthrenyl, indanyl, indenyl, and the like. In some embodiments, aryl groups have from 6 to about 20 carbon atoms.
As used herein, "alkenyl" refers to an aliphatic group containing at least one double bond. As used herein, "alkynyl" refers to a straight or branched hydrocarbon chain containing 2-12 carbon atoms and characterized in having one or more triple bonds.
Examples of alkynyl groups include, but are not limited to, ethynyl, propargyl, and 3- hexynyl.
As used herein, "arylalkyl" or "aralkyl" refers to an alkyl moiety in which an alkyl hydrogen atom is replaced by an aryl group. Aralkyl includes groups in which more than one hydrogen atom has been replaced by an aryl group. Examples of "arylalkyl" or "aralkyl" include benzyl, 2-phenylethyl, 3-phenylpropyl, 9-fluorenyl, benzhydryl, and trityl groups.
As used herein, "cycloalkyl" refers to a cyclic, bicyclic, tricyclic, or polycyclic non- aromatic hydrocarbon groups having 3 to 12 carbons. Examples of cycloalkyl moieties include, but are not limited to, cyclopropyl, cyclopentyl, and cyclohexyl.
As used herein, "heterocyclyl" refers to a monovalent radical of a heterocyclic ring system. Representative heterocyclyls include, without limitation, tetrahydrofuranyl, tetrahydrothienyl, pyrrolidinyl, pyrrolidonyl, piperidinyl, pyrrolinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, and morpholinyl.
As used herein, "heteroaryl" refers to a monovalent radical of a heteroaromatic ring system. Examples of heteroaryl moieties include, but are not limited to, imidazolyl, oxazolyl, thiazolyl, triazolyl, pyrrolyl, furanyl, indolyl, thiophenyl pyrazolyl, pyridinyl, pyrazinyl, pyridazinyl, pyrimidinyl, indolizinyl, purinyl, naphthyridinyl, quinolyl, and pteridinyl.
Phosphate Backbone Modifications
The Phosphate Group
In some embodiments, the phosphate group of a modified nucleotide can be modified by replacing one or more of the oxygens with a different substituent. Further, the modified nucleotide, e.g., modified nucleotide present in a modified nucleic acid, can include the wholesale replacement of an unmodified phosphate moiety with a modified phosphate as described herein. In some embodiments, the modification of the phosphate backbone can include alterations that result in either an uncharged linker or a charged linker with unsymmetrical charge distribution.
Examples of modified phosphate groups include, phosphorothioate,
phosphoroselenates, borano phosphates, borano phosphate esters, hydrogen phosphonates, phosphoroamidates, alkyl or aryl phosphonates and phosphotriesters. In some embodiments, one of the non-bridging phosphate oxygen atoms in the phosphate backbone moiety can be replaced by any of the following groups: sulfur (S), selenium (Se), BR3 (wherein R can be, e.g., hydrogen, alkyl, or aryl), C (e.g., an alkyl group, an aryl group, and the like), H, NR2 (wherein R can be, e.g., hydrogen, alkyl, or aryl), or OR (wherein R can be, e.g., alkyl or aryl). The phosphorous atom in an unmodified phosphate group is achiral. However, replacement of one of the non-bridging oxygens with one of the above atoms or groups of atoms can render the phosphorous atom chiral; that is to say that a phosphorous atom in a phosphate group modified in this way is a stereogenic center. The stereogenic phosphorous atom can possess either the "R" configuration (herein Rp) or the "S" configuration (herein Sp).
Phosphorodithioates have both non-bridging oxygens replaced by sulfur. The phosphorus center in the phosphorodithioates is achiral which precludes the formation of oligoribonucleotide diastereomers. In some embodiments, modifications to one or both non- bridging oxygens can also include the replacement of the non-bridging oxygens with a group independently selected from S, Se, B, C, H, N, and OR (R can be, e.g., alkyl or aryl).
The phosphate linker can also be modified by replacement of a bridging oxygen, (i.e., the oxygen that links the phosphate to the nucleoside), with nitrogen (bridged
phosphoroamidates), sulfur (bridged phosphorothioates) and carbon (bridged
methylenephosphonates). The replacement can occur at either linking oxygen or at both of the linking oxygens.
Replacement of the Phosphate Group
The phosphate group can be replaced by non-phosphorus containing connectors. In some embodiments, the charge phosphate group can be replaced by a neutral moiety.
Examples of moieties which can replace the phosphate group can include, without limitation, e.g., methyl phosphonate, hydroxylamino, siloxane, carbonate, carboxymethyl, carbamate, amide, thioether, ethylene oxide linker, sulfonate, sulfonamide, thioformacetal, formacetal, oxime, methyleneimino, methylenemethylimino, methylenehydrazo,
methylenedimethylhydrazo and methyleneoxymethylimino.
Replacement of the Ribophosphate Backbone
Scaffolds that can mimic nucleic acids can also be constructed wherein the phosphate linker and ribose sugar are replaced by nuclease resistant nucleoside or nucleotide surrogates. In some embodiments, the nucleobases can be tethered by a surrogate backbone. Examples can include, without limitation, the morpholino, cyclobutyl, pyrrolidine and peptide nucleic acid (PNA) nucleoside surrogates. Sugar Modifications
The modified nucleosides and modified nucleotides can include one or more modifications to the sugar group. For example, the 2' hydroxyl group (OH) can be modified or replaced with a number of different "oxy" or "deoxy" substituents. In some embodiments, modifications to the 2' hydroxyl group can enhance the stability of the nucleic acid since the hydroxyl can no longer be deprotonated to form a 2'-alkoxide ion. The 2'-alkoxide can catalyze degradation by intramolecular nucleophilic attack on the linker phosphorus atom.
Examples of "oxy"-2' hydroxyl group modifications can include alkoxy or aryloxy (OR, wherein "R" can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or a sugar);
polyethyleneglycols (PEG), 0(CH2CH20)nCH2CH2OR wherein R can be, e.g., H or optionally substituted alkyl, and n can be an integer from 0 to 20 (e.g., from 0 to 4, from 0 to 8, from 0 to 10, from 0 to 16, from 1 to 4, from 1 to 8, from 1 to 10, from 1 to 16, from 1 to 20, from 2 to 4, from 2 to 8, from 2 to 10, from 2 to 16, from 2 to 20, from 4 to 8, from 4 to 10, from 4 to 16, and from 4 to 20). In some embodiments, the "oxy"-2' hydroxyl group modification can include "locked" nucleic acids (LNA) in which the 2' hydroxyl can be connected, e.g., by a Ci_6 alkylene or Ci_6 heteroalkylene bridge, to the 4' carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy, 0(CH2)n-amino, (wherein amino can be, e.g., NH2;
alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino). In some embodiments, the "oxy"-2' hydroxyl group modification can include the methoxyethyl group (MOE), (OCH2CH2OCH3, e.g., a PEG derivative).
"Deoxy" modifications can include hydrogen (i.e. deoxyribose sugars, e.g., at the overhang portions of partially ds RNA); halo (e.g., bromo, chloro, fluoro, or iodo); amino (wherein amino can be, e.g., NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid);
NH(CH2CH2NH)nCH2CH2-amino (wherein amino can be, e.g., as described herein), - NHC(0)R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), cyano; mercapto; alkyl-thio-alkyl; thioalkoxy; and alkyl, cycloalkyl, aryl, alkenyl and alkynyl, which may be optionally substituted with e.g., an amino as described herein.
The sugar group can also contain one or more carbons that possess the opposite stereochemical configuration than that of the corresponding carbon in ribose. Thus, a modified nucleic acid can include nucleotides containing e.g., arabinose, as the sugar. The nucleotide "monomer" can have an alpha linkage at the position on the sugar, e.g., alpha- nucleosides. The modified nucleic acids can also include "abasic" sugars, which lack a nucleobase at C- 1 ' . These abasic sugars can also be further modified at one or more of the constituent sugar atoms. The modified nucleic acids can also include one or more sugars that are in the L form, e.g. L- nucleosides.
Generally, RNA includes the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified nucleosides and modified nucleotides can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4- membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7- membered ring having an additional carbon or heteroatom, such as for example,
anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). In some embodiments, the modified nucleotides can include multicyclic forms (e.g., tricyclo; and "unlocked" forms, such as glycol nucleic acid (GNA) (e.g., R-GNA or S-GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), threose nucleic acid (TNA, where ribose is replaced with a-L-threofuranosyl- (3'→2')).
Modifications on the Nucleobase
The modified nucleosides and modified nucleotides described herein, which can be incorporated into a modified nucleic acid, can include a modified nucleobase. Examples of nucleobases include, but are not limited to, adenine (A), guanine (G), cytosine (C), and uracil (U). These nucleobases can be modified or wholly replaced to provide modified nucleosides and modified nucleotides that can be incorporated into modified nucleic acids. The nucleobase of the nucleotide can be independently selected from a purine, a pyrimidine, a purine or pyrimidine analog. In some embodiments, the nucleobase can include, for example, naturally-occurring and synthetic derivatives of a base.
Uracil
In some embodiments, the modified nucleobase is a modified uracil. Exemplary nucleobases and nucleosides having a modified uracil include without limitation
pseudouridine (ψ), pyridin-4-one ribonucleoside, 5-aza-uridine, 6-aza-uridine, 2-thio-5-aza- uridine, 2-thio-uridine (s2U), 4-thio-uridine (s4U), 4-thio-pseudouridine, 2-thio- pseudouridine, 5 -hydroxy-uridine (ho5U), 5-aminoallyl-uridine, 5-halo-uridine (e.g., 5-iodo- uridine or 5-bromo-uridine), 3-methyl-uridine (m3U), 5-methoxy-uridine (mo5U), uridine 5- oxyacetic acid (cmo5U), uridine 5-oxyacetic acid methyl ester (mcmo5U), 5-carboxymethyl- uridine (cm5U), 1-carboxymethyl-pseudouridine, 5-carboxyhydroxymethyl-uridine (chm5U), 5-carboxyhydroxymethyl-uridine methyl ester (mchm5U), 5-methoxycarbonylmethyl-uridine (mcm5U), 5-methoxycarbonylmethyl-2-thio-uridine (mcm5s2U), 5-aminomethyl-2-thio- uridine (nm5s2U), 5-methylaminomethyl-uridine (mnm5U), 5-methylaminomethyl-2-thio- uridine (mnm5s2U), 5-methylaminomethyl-2-seleno-uridine (mnm5se2U), 5- carbamoylmethyl-uridine (ncm5U), 5-carboxymethylaminomethyl-uridine (cmnm5U), 5- carboxymethylaminomethyl-2-thio-uridine (cmnm 5s2U), 5 -propynyl -uridine, 1-propynyl- pseudouridine, 5-taurinomethyl-uridine (tcm5U), 1-taurinomethyl-pseudouridine, 5- taurinomethyl-2-thio-uridine(Tm5s2U), l-taurinomethyl-4-thio-pseudouridine, 5-methyl- uridine (m5U, i.e., having the nucleobase deoxy thy mine), 1 -methyl -pseudouridine (ηι ψ), 5- methyl-2-thio-uridine (m5s2U), l-methyl-4-thio-pseudouridine (m vi/), 4-thio-l-methyl- pseudouridine, 3-methyl-pseudouridine (ιη3ψ), 2-thio-l-methyl-pseudouridine, 1-methyl-l- deaza-pseudouridine, 2-thio-l-methyl-l-deaza-pseudouridine, dihydrouridine (D), dihydropseudouridine, 5,6-dihydrouridine, 5-methyl-dihydrouridine (m5D), 2-thio- dihydrouridine, 2-thio-dihydropseudouridine, 2-methoxy-uridine, 2-methoxy-4-thio-uridine, 4-methoxy-pseudouridine, 4-methoxy-2-thio-pseudouridine, Nl-methyl-pseudouridine, 3-(3- amino-3-carboxypropyl)uridine (acp3U), l-methyl-3-(3-amino-3- carboxypropyl)pseudouridine
Figure imgf000637_0001
5-(isopentenylaminomethyl)uridine (inm5U), 5- (isopentenylaminomethyl)-2-thio-uridine (inm5s2U), a-thio-uridine, 2'-0-methyl-uridine (Um), 5,2'-0-dimethyl-uridine (m5Um), 2'-0-methyl-pseudouridine (ψηι), 2-thio-2'-0- methyl-uridine (s2Um), 5-methoxycarbonylmethyl-2'-0-methyl-uridine (mcm 5Um), 5- carbamoylmethyl-2'-0-methyl-uridine (ncm 5Um), 5-carboxymethylaminomethyl-2'-0- methyl-uridine (cmnm 5Um), 3,2'-0-dimethyl-uridine (m3Um), 5-(isopentenylaminomethyl)- 2'-0-methyl-uridine (inm 5Um), 1-thio-uridine, deoxythymidine, 2'-F-ara-uridine, 2'-F- uridine, 2'-OH-ara-uridine, 5-(2-carbomethoxyvinyl) uridine, 5-[3-(l-E- propenylamino)uridine, pyrazolo[3,4-d]pyrimidines, xanthine, and hypoxanthine.
Cytosine
In some embodiments, the modified nucleobase is a modified cytosine. Exemplary nucleobases and nucleosides having a modified cytosine include without limitation 5-aza- cytidine, 6-aza-cytidine, pseudoisocytidine, 3-methyl-cytidine (m3C), N4-acetyl-cytidine (act), 5-formyl-cytidine (f5C), N4-methyl-cytidine (m4C), 5-methyl-cytidine (m5C), 5-halo- cytidine (e.g., 5-iodo-cytidine), 5-hydroxymethyl-cytidine (hm5C), 1-methyl- pseudoisocytidine, pyrrolo-cytidine, pyrrolo-pseudoisocytidine, 2-thio-cytidine (s2C), 2-thio- 5-methyl-cytidine, 4-thio-pseudoisocytidine, 4-thio-l-methyl-pseudoisocytidine, 4-thio-l- methyl-l-deaza-pseudoisocytidine, 1 -methyl- 1-deaza-pseudoisocytidine, zebularine, 5-aza- zebularine, 5-methyl-zebularine, 5-aza-2-thio-zebularine, 2-thio-zebularine, 2-methoxy- cytidine, 2-methoxy-5-methyl-cytidine, 4-methoxy-pseudoisocytidine, 4-methoxy-l -methyl - pseudoisocytidine, lysidine (k2C), a-thio-cytidine, 2'-0-methyl-cytidine (Cm), 5,2'-0- dimethyl-cytidine (m5Cm), N4-acetyl-2'-0-methyl-cytidine (ac4Cm), N4,2'-0-dimethyl- cytidine (m4Cm), 5-formyl-2'-0-methyl-cytidine (f 5Cm), N4,N4,2'-0-trimethyl-cytidine (m4 2Cm), 1-thio-cytidine, 2'-F-ara-cytidine, 2'-F-cytidine, and 2'-OH-ara-cytidine.
Adenine
In some embodiments, the modified nucleobase is a modified adenine. Exemplary nucleobases and nucleosides having a modified adenine include without limitation 2-amino- purine, 2,6-diaminopurine, 2-amino-6-halo-purine (e.g., 2-amino-6-chloro-purine), 6-halo- purine (e.g., 6-chloro-purine), 2-amino-6-methyl-purine, 8-azido-adenosine, 7-deaza- adenosine, 7-deaza-8-aza-adenosine, 7-deaza-2-amino-purine, 7-deaza-8-aza-2-amino-purine, 7-deaza-2,6-diaminopurine, 7-deaza-8-aza-2,6-diaminopurine, 1-methyl-adenosine (m]A), 2- methyl-adenosine (m2A), N6-methyl-adenosine (m6A), 2-methylthio-N6-methyl-adenosine (ms2m6A), N6-isopentenyl-adenosine (i6A), 2-methylthio-N6-isopentenyl-adenosine
(ms2i6A), N6-(cis-hydroxyisopentenyl)adenosine (io6A), 2-methylthio-N6-(cis- hydroxyisopentenyl)adenosine (ms2io6A), N6-glycinylcarbamoyl-adenosine (g6A), N6- threonylcarbamoyl-adenosine (t6A), N6-methyl-N6-threonylcarbamoyl-adenosine (m6t6A), 2- methylthio-N6-threonylcarbamoyl-adenosine (ms2g6A), N6,N6-dimethyl-adenosine (m6 2A), N6-hydroxynorvalylcarbamoyl-adenosine (hn6A), 2-methylthio-N6- hydroxynorvalylcarbamoyl-adenosine (ms2hn6A), N6-acetyl-adenosine (ac6A), 7-methyl- adenosine, 2-methylthio-adenosine, 2-methoxy-adenosine, a-thio-adenosine, 2'-0-methyl- adenosine (Am), N6,2'-0-dimethyl-adenosine (m6Am), N6-Methyl-2'-deoxyadenosine, N6,N6,2'-0-trimethyl-adenosine (m6 2Am), l,2'-0-dimethyl-adenosine (m'Am), 2'-0- ribosyladenosine (phosphate) (Ar(p)), 2-amino-N6-methyl -purine, 1-thio-adenosine, 8-azido- adenosine, 2'-F-ara-adenosine, 2'-F-adenosine, 2'-OH-ara-adenosine, and N6-(19-amino- pentaoxanonadecyl)-adenosine.
Guanine
In some embodiments, the modified nucleobase is a modified guanine. Exemplary nucleobases and nucleosides having a modified guanine include without limitation inosine (I), 1-methyl-inosine (m1!), wyosine (imG), methylwyosine (mimG), 4-demethyl-wyosine (imG-14), isowyosine (imG2), wybutosine (yW), peroxywybutosine (o2yW),
hydroxywybutosine (OHyW), undermodified hydroxywybutosine (OHyW*), 7-deaza- guanosine, queuosine (Q), epoxyqueuosine (oQ), galactosyl-queuosine (galQ), mannosyl- queuosine (manQ), 7-cyano-7-deaza-guanosine (preQo), 7-aminomethyl-7-deaza-guanosine (preQi), archaeosine (G+), 7-deaza-8-aza-guanosine, 6-thio-guanosine, 6-thio-7-deaza- guanosine, 6-thio-7-deaza-8-aza-guanosine, 7-methyl-guanosine (m7G), 6-thio-7-methyl- guanosine, 7-methyl-inosine, 6-methoxy-guanosine, 1-methyl-guanosine (m'G), N2-methyl- guanosine (m2G), N2,N2-dimethyl-guanosine (m2 2G), N2,7-dimethyl-guanosine (m2,7G), N2, N2,7-dimethyl-guanosine (m2,2,7G), 8-oxo-guanosine, 7-methyl-8-oxo-guanosine, 1- methyl-6-thio-guanosine, N2-methyl-6-thio-guanosine, N2,N2-dimethyl-6-thio-guanosine, a- thio-guanosine, 2'-0-methyl-guanosine (Gm), N2-methyl-2'-0-methyl-guanosine (m2Gm), N2,N2-dimethyl-2'-0-methyl-guanosine (m2 2Gm), l-methyl-2'-0-methyl-guanosine (m'Gm), N2,7-dimethyl-2'-0-methyl-guanosine (m2,7Gm), 2'-0-methyl -inosine (Im), l,2'-0-dimethyl- inosine (m'lm), 06-phenyl-2'-deoxyinosine, 2'-0-ribosylguanosine (phosphate) (Gr(p)), 1- thio-guanosine, 06-methyl-guanosine, 06-Methyl-2'-deoxyguanosine, 2'-F-ara-guanosine, and 2'-F-guanosine.
Exemplary Modified gRNAs
In some embodiments, the modified nucleic acids can be modified gRNAs. It is to be understood that any of the gRNAs described herein can be modified in accordance with this section, including any gRNA that comprises a targeting domain from Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A- 13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
As discussed above, transiently expressed or delivered nucleic acids can be prone to degradation by, e.g., cellular nucleases. Accordingly, in one aspect the modified gRNAs described herein can contain one or more modified nucleosides or nucleotides which introduce stability toward nucleases. While not wishing to be bound by theory it is also believed that certain modified gRNAs described herein can exhibit a reduced innate immune response when introduced into a population of cells, particularly the cells of the present invention. As noted above, the term "innate immune response" includes a cellular response to exogenous nucleic acids, including single stranded nucleic acids, generally of viral or bacterial origin, which involves the induction of cytokine expression and release, particularly the interferons, and cell death.
While some of the exemplary modification discussed in this section may be included at any position within the gRNA sequence, in some embodiments, a gRNA comprises a modification at or near its 5' end (e.g., within 1-10, 1-5, or 1-2 nucleotides of its 5' end). In some embodiments, a gRNA comprises a modification at or near its 3' end (e.g., within 1-10, 1-5, or 1-2 nucleotides of its 3' end). In some embodiments, a gRNA comprises both a modification at or near its 5' end and a modification at or near its 3' end.
In an embodiment, the 5 ' end of a gRNA is modified by the inclusion of a eukaryotic mRNA cap structure or cap analog (e.g., a G(5')ppp(5')G cap analog, a m7G(5')ppp(5')G cap analog, or a 3'-0-Me-m7G(5')ppp(5')G anti reverse cap analog (ARCA)). The cap or cap analog can be included during either chemical synthesis or in vitro transcription of the gRNA.
In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5' triphosphate group.
In an embodiment, the 3 ' end of a gRNA is modified by the addition of one or more (e.g., 25-200) adenine (A) residues. The polyA tract can be contained in the nucleic acid (e.g., plasmid, PCR product, viral genome) encoding the gRNA, or can be added to the gRNA during chemical synthesis, or following in vitro transcription using a polyadenosine polymerase (e.g., E. coli Poly(A)Polymerase).
In an embodiment, in vitro transcribed gRNA contains both a 5 ' cap structure or cap analog and a 3' polyA tract. In an embodiment, an in vitro transcribed gRNA is modified by treatment with a phosphatase (e.g., calf intestinal alkaline phosphatase) to remove the 5' triphosphate group and comprises a 3' polyA tract.
In some embodiments, gRNAs can be modified at a 3' terminal U ribose. For example, the two terminal hydroxyl groups of the U ribose can be oxidized to aldehyde groups and a concomitant opening of the ribose ring to afford a modified nucleoside as shown below:
Figure imgf000640_0001
wherein "U" can be an unmodified or modified uridine. In another embodiment, the 3' terminal U can be modified with a 2' 3' cyclic phosphate as shown below:
Figure imgf000641_0001
wherein "U" can be an unmodified or modified uridine.
In some embodiments, the gRNA molecules may contain 3' nucleotides which can be stabilized against degradation, e.g., by incorporating one or more of the modified nucleotides described herein. In this embodiment, e.g., uridines can be replaced with modified uridines, e.g., 5-(2-amino)propyl uridine, and 5-bromo uridine, or with any of the modified uridines described herein; adenosines and guanosines can be replaced with modified adenosines and guanosines, e.g., with modifications at the 8-position, e.g., 8-bromo guanosine, or with any of the modified adenosines or guanosines described herein.
In some embodiments, sugar-modified ribonucleotides can be incorporated into the gRNA, e.g., wherein the 2' OH-group is replaced by a group selected from H, -OR, -R (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), halo, -SH, -SR (wherein R can be, e.g., alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), amino (wherein amino can be, e.g., N¾; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, diheteroarylamino, or amino acid); or cyano (-CN). In some embodiments, the phosphate backbone can be modified as described herein, e.g., with a phosphothioate group. In some embodiments, one or more of the nucleotides of the gRNA can each independently be a modified or unmodified nucleotide including, but not limited to 2 '-sugar modified, such as, 2'-0-methyl, 2'-0-methoxyethyl, or 2'-Fluoro modified including, e.g., 2'-F or 2'-0-methyl, adenosine (A), 2'-F or 2'-0-methyl, cytidine (C), 2'-F or 2'-0-methyl, uridine (U), 2'-F or 2'-0-methyl, thymidine (T), 2'-F or 2'-0-methyl, guanosine (G), 2'-0- methoxyethyl-5-methyluridine (Teo), 2'-0-methoxyethyladenosine (Aeo), 2'-0- methoxyethyl-5-methylcytidine (m5Ceo), and any combinations thereof.
In some embodiments, a gRNA can include "locked" nucleic acids (LNA) in which the 2' OH-group can be connected, e.g., by a Cl-6 alkylene or Cl-6 heteroalkylene bridge, to the 4' carbon of the same ribose sugar, where exemplary bridges can include methylene, propylene, ether, or amino bridges; O-amino (wherein amino can be, e.g., N¾; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino) and aminoalkoxy or 0(CH2)n-amino (wherein amino can be, e.g., N¾; alkylamino, dialkylamino, heterocyclyl, arylamino, diarylamino, heteroarylamino, or diheteroarylamino, ethylenediamine, or polyamino).
In some embodiments, a gRNA can include a modified nucleotide which is multicyclic (e.g., tricyclo; and "unlocked" forms, such as glycol nucleic acid (GNA) (e.g., R- GNA or S-GNA, where ribose is replaced by glycol units attached to phosphodiester bonds), or threose nucleic acid (TNA, where ribose is replaced with a-L-threofuranosyl-(3'→2')).
Generally, gRNA molecules include the sugar group ribose, which is a 5-membered ring having an oxygen. Exemplary modified gRNAs can include, without limitation, replacement of the oxygen in ribose (e.g., with sulfur (S), selenium (Se), or alkylene, such as, e.g., methylene or ethylene); addition of a double bond (e.g., to replace ribose with cyclopentenyl or cyclohexenyl); ring contraction of ribose (e.g., to form a 4-membered ring of cyclobutane or oxetane); ring expansion of ribose (e.g., to form a 6- or 7-membered ring having an additional carbon or heteroatom, such as for example, anhydrohexitol, altritol, mannitol, cyclohexanyl, cyclohexenyl, and morpholino that also has a phosphoramidate backbone). Although the majority of sugar analog alterations are localized to the 2' position, other sites are amenable to modification, including the 4' position. In an embodiment, a gRNA comprises a 4'-S, 4'-Se or a 4'-C-aminomethyl-2'-0-Me modification.
In some embodiments, deaza nucleotides, e.g., 7-deaza-adenosine, can be
incorporated into the gRNA. In some embodiments, O- and N-alkylated nucleotides, e.g., N6-methyl adenosine, can be incorporated into the gRNA. In some embodiments, one or more or all of the nucleotides in a gRNA molecule are deoxynucleotides. miRNA binding sites
microRNAs (or miRNAs) are naturally occurring cellular 19-25 nucleotide long noncoding RNAs. They bind to nucleic acid molecules having an appropriate miRNA binding site, e.g., in the 3' UTR of an mRNA, and down-regulate gene expression. While not wishing to be bound by theory it is believed that the down regulation is either by reducing nucleic acid molecule stability or by inhibiting translation. An RNA species disclosed herein, e.g., an mRNA encoding Cas9 can comprise an miRNA binding site, e.g., in its 3'UTR. The miRNA binding site can be selected to promote down regulation of expression is a selected cell type. By way of example, the incorporation of a binding site for miR-122, a microRNA abundant in liver, can inhibit the expression of the gene of interest in the liver. EXAMPLES
The following Examples are merely illustrative and are not intended to limit the scope or content of the invention in any way. Example 1 : Evaluation of candidate guide RNAs (gRNAs)
The suitability of candidate gRNAs can be evaluated as described in this example. Although described for a chimeric gRNA, the approach can also be used to evaluate modular gRNAs.
Cloning gRNAs into Vectors
For each gRNA, a pair of overlapping oligonucleotides is designed and obtained.
Oligonucleotides are annealed and ligated into a digested vector backbone containing an upstream U6 promoter and the remaining sequence of a long chimeric gRNA. Plasmid is sequence-verified and prepped to generate sufficient amounts of transfection-quality DNA. Alternate promoters maybe used to drive in vivo transcription (e.g. HI promoter) or for in vitro transcription (e.g., a T7 promoter).
Cloning gRNAs in linear dsDNA molecule (STITCHR)
For each gRNA, a single oligonucleotide is designed and obtained. The U6 promoter and the gRNA scaffold (e.g. including everything except the targeting domain, e.g., including sequences derived from the crRNA and tracrRNA, e.g., including a first complementarity domain; a linking domain; a second complementarity domain; a proximal domain; and a tail domain) are separately PCR amplified and purified as dsDNA molecules. The gRNA- specific oligonucleotide is used in a PCR reaction to stitch together the U6 and the gRNA scaffold, linked by the targeting domain specified in the oligonucleotide. Resulting dsDNA molecule (STITCHR product) is purified for transfection. Alternate promoters may be used to drive in vivo transcription (e.g., HI promoter) or for in vitro transcription (e.g., T7 promoter). Any gRNA scaffold may be used to create gRNAs compatible with Cas9s from any bacterial species.
Initial gRNA Screen
Each gRNA to be tested is transfected, along with a plasmid expressing Cas9 and a small amount of a GFP-expressing plasmid into human cells. In preliminary experiments, these cells can be immortalized human cell lines such as 293T, K562 or U20S.
Alternatively, primary human cells may be used. In this case, cells may be relevant to the eventual therapeutic cell target (for example, photoreceptor cells). The use of primary cells similar to the potential therapeutic target cell population may provide important information on gene targeting rates in the context of endogenous chromatin and gene expression.
Transfection may be performed using lipid transfection (such as Lipofectamine or Fugene) or by electroporation (such as Lonza Nucleofection). Following transfection, GFP expression can be determined either by fluorescence microscopy or by flow cytometry to confirm consistent and high levels of transfection. These preliminary transfections can comprise different gRNAs and different targeting approaches (17-mers, 20-mers, nuclease, dual-nickase, etc.) to determine which gRNAs/combinations of gRNAs give the greatest activity.
Efficiency of cleavage with each gRNA may be assessed by measuring NHEJ- induced indel formation at the target locus by a T7El-type assay or by sequencing.
Alternatively, other mismatch-sensitive enzymes, such as Cell/Surveyor nuclease, may also be used.
For the T7E1 assay, PCR amplicons are approximately 500-700bp with the intended cut site placed asymmetrically in the amplicon. Following amplification, purification and size- verification of PCR products, DNA is denatured and re-hybridized by heating to 95 °C and then slowly cooling. Hybridized PCR products are then digested with T7 Endonuclease I (or other mismatch-sensitive enzyme) which recognizes and cleaves non-perfectly matched DNA. If indels are present in the original template DNA, when the amplicons are denatured and re-annealed, this results in the hybridization of DNA strands harboring different indels and therefore lead to double-stranded DNA that is not perfectly matched. Digestion products may be visualized by gel electrophoresis or by capillary electrophoresis. The fraction of DNA that is cleaved (density of cleavage products divided by the density of cleaved and uncleaved) may be used to estimate a percent NHEJ using the following equation: NHEJ = (1-(1 -fraction cleaved)'72). The T7E1 assay is sensitive down to about 2-5% NHEJ.
Sequencing may be used instead of, or in addition to, the T7E1 assay. For Sanger sequencing, purified PCR amplicons are cloned into a plasmid backbone, transformed, miniprepped and sequenced with a single primer. Sanger sequencing may be used for determining the exact nature of indels after determining the NHEJ rate by T7E1.
Sequencing may also be performed using next generation sequencing techniques.
When using next generation sequencing, amplicons may be 300-500bp with the intended cut site placed asymmetrically. Following PCR, next generation sequencing adapters and barcodes (for example Illumina multiplex adapters and indexes) may be added to the ends of the amplicon, e.g., for use in high throughput sequencing (for example on an Illumina MiSeq). This method allows for detection of very low NHEJ rates.
Example 2: Assessment of Gene Targeting by NHEJ
The gRNAs that induce the greatest levels of NHEJ in initial tests can be selected for further evaluation of gene targeting efficiency. In this case, cells are derived from disease subjects and, therefore, harbor the relevant mutation.
Following transfection (usually 2-3 days post-transfection,) genomic DNA may be isolated from a bulk population of transfected cells and PCR may be used to amplify the target region. Following PCR, gene targeting efficiency to generate the desired mutations (either knockout of a target gene or removal of a target sequence motif) may be determined by sequencing. For Sanger sequencing, PCR amplicons may be 500-700bp long. For next generation sequencing, PCR amplicons may be 300-500bp long. If the goal is to knockout gene function, sequencing may be used to assess what percent of alleles have undergone NHEJ-induced indels that result in a frameshift or large deletion or insertion that would be expected to destroy gene function. If the goal is to remove a specific sequence motif, sequencing may be used to assess what percent of alleles have undergone NHEJ-induced deletions that span this sequence. Example 3: Assessment of Gene Targeting by HDR
The gRNAs that induce the greatest levels of NHEJ in initial tests can be selected for further evaluation of gene targeting efficiency. In this case, cells are derived from disease subjects and, therefore, harbor the relevant mutation.
Following transfection (usually 2-3 days post-transfection,) genomic DNA may be isolated from a bulk population of transfected cells and PCR may be used to amplify the target region. Following PCR, gene targeting efficiency can be determined by several methods.
Determination of gene targeting frequency involves measuring the percentage of alleles that have undergone homologous directed repair (HDR) with the donor template and which therefore have incorporated desired correction. If the desired HDR event creates or destroys a restriction enzyme site, the frequency of gene targeting may be determined by a RFLP assay. If no restriction site is created or destroyed, sequencing may be used to determine gene targeting frequency. If a RFLP assay is used, sequencing may still be used to verify the desired HDR event and ensure that no other mutations are present. At least one of the primers is placed in the endogenous gene sequence outside of the region included in the homology arms, which prevents amplification of donor template still present in the cells. Therefore, the length of the homology arms present in the donor template may affect the length of the PCR amplicon. PCR amplicons can either span the entire donor region (both primers placed outside the homology arms) or they can span only part of the donor region and a single junction between donor and endogenous DNA (one internal and one external primer). If the amplicons span less than entire donor region, two different PCRs should be used to amplify and sequence both the 5' and the 3' junction.
If the PCR amplicon is short (less than 600bp) it is possible to use next generation sequencing. Following PCR, next generation sequencing adapters and barcodes (for example Illumina multiplex adapters and indexes) may be added to the ends of the amplicon, e.g., for use in high throughput sequencing (for example on an Illumina MiSeq). This method allows for detection of very low gene targeting rates.
If the PCR amplicon is too long for next generation sequencing, Sanger sequencing can be performed. For Sanger sequencing, purified PCR amplicons will be cloned into a plasmid backbone (for example, TOPO cloned using the LifeTech Zero Blunt® TOPO® cloning kit), transformed, miniprepped and sequenced.
Incorporation by Reference
All publications, patents, and patent applications mentioned herein are hereby incorporated by reference in their entirety as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control.
Equivalents
Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims.

Claims

Other embodiments are within the following claims. What is claimed is:
1. A gRNA molecule comprising a targeting domain which is complementary with a target domain from the MYOC gene.
2. The gRNA molecule of claim 1 , wherein said targeting domain is configured to
provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of a POAG target point position, a POAG target hotspot mutation, or a POAG target knockout position.
3. The gRNA molecule of claim 1, wherein said targeting domain is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to a POAG knockdown target position to reduce, decrease or repress expression of the MYOC gene.
4. The gRNA molecule of any of claims 1-3, wherein said targeting domain is
configured to target the promoter region of the MYOC gene.
5. The gRNA molecule of any of claims 1-4, wherein said targeting domain comprises a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
6. The gRNA molecule of any of claims 1-5, wherein said targeting domain comprises a sequence that is the same as a targeting domain sequence from any of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
7. The gRNA molecule of any of claims 1, 2, or 4-6, wherein said targeting domain is selected from those in Tables 1A-1E, 21A-21D, 22A-22E, or 23A-23B.
8. The gRNA molecule of any of claims 1, 2, or 4-6, wherein said targeting domain is selected from those in Tables 2A-2E, 18A-18D, 19A-19E, or 20A-20D.
9. The gRNA molecule of any of claims 1, 2, or 4-6, wherein said targeting domain is selected from those in Tables 3A-3E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A- 16E, or 17A-17B.
10. The gRNA molecule of any of claims 1, 2, or 4-6, wherein said targeting domain is selected from those in Tables 4A-4E, 6A-6E, 7A-7G, or 8A-8E.
11. The gRNA molecule of any of claims 1 or 3-6, wherein said targeting domain is selected from those in Tables 5A-5F, 9A-9E, 10A-10G, or 11A-11E.
12. The gRNA molecule of claim 2, wherein the POAG target point position comprises a mutation at P370 in the MYOC gene, or wherein the POAG target hotspot mutation comprises a mutational hotspot between amino acid sequence positions 246-252, 368- 380, 368-370 plus 377-380, 364-380, 347-380, 423-437, or 477-502 in the MYOC gene.
13. The gRNA molecule of any of claims 1-12, wherein said gRNA is a modular gRNA molecule.
14. The gRNA molecule of any of claims 1-12, wherein said gRNA is a chimeric gRNA molecule.
15. The gRNA molecule of any of claims 1-14, wherein said targeting domain is 16
nucleotides or more in length.
16. The gRNA molecule of any of claims 1-15, wherein said targeting domain is 17
nucleotides in length.
17. The gRNA molecule of any of claims 1-16, wherein said targeting domain is 18
nucleotides in length.
18. The gRNA molecule of any of claims 1-17, wherein said targeting domain is 19
nucleotides in length.
19. The gRNA molecule of any of claims 1-18, wherein said targeting domain is 20
nucleotides in length.
20. The gRNA molecule of any of claims 1-19, wherein said targeting domain is 21
nucleotides in length.
21. The gRNA molecule of any of claims 1-20, wherein said targeting domain is 22
nucleotides in length.
22. The gRNA molecule of any of claims 1-21, wherein said targeting domain is 23
nucleotides in length.
23. The gRNA molecule of any of claims 1-22, wherein said targeting domain is 24
nucleotides in length.
24. The gRNA molecule of any of claims 1-23, wherein said targeting domain is 25
nucleotides in length.
25. The gRNA molecule of any of claims 1-24, wherein said targeting domain is 26 nucleotides in length.
26. The gRNA molecule of any of claims 1-25, comprising from 5' to 3' :
a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain;
a proximal domain; and
a tail domain.
27. The gRNA molecule of any of claims 1-26, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length;
a targeting domain of 17 or 18 nucleotides in length.
28. The gRNA molecule of any of claims 1-27, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 25 nucleotides in length;
a targeting domain of 17 or 18 nucleotides in length.
29. The gRNA molecule of any of claims 1-28, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length;
a targeting domain of 17 nucleotides in length.
30. The gRNA molecule of any of claims 1-29, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length;
a targeting domain of 17 nucleotides in length.
31. A nucleic acid that comprises: (a) sequence that encodes a gRNA molecule
comprising a targeting domain that is complementary with a POAG target domain in MYOC gene.
32. The nucleic acid of claim 31, wherein said gRNA molecule is a gRNA molecule of any of claims 1-30.
33. The nucleic acid of claim 31 or 32, wherein said targeting domain is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of the POAG target point position, a POAG target hotspot mutation, or a POAG target knockout position.
34. The nucleic acid of claim 31 or 32, wherein said targeting domain is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to a POAG knockdown target position to reduce, decrease or repress expression of the MYOC gene.
35. The nucleic acid of any of claims 31-34, wherein said targeting domain is configured to target the promoter region of the MYOC gene.
36. The nucleic acid of any of claims 31-35, wherein said targeting domain comprises a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
37. The nucleic acid of any of claims 31-36, wherein said targeting domain comprises a sequence that is the same as a targeting domain sequence from any of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E,
20A-20D, 21A-21D, 22A-22E, or 23A-23B.
38. The nucleic acid of any of claims 31-37, wherein said gRNA is a modular gRNA molecule.
39. The nucleic acid of any of claims 31-37, wherein said gRNA is a chimeric gRNA molecule.
40. The nucleic acid of any of claims 31-39, wherein said targeting domain is 16
nucleotides or more in length.
41. The nucleic acid of any of claims 31-40, wherein said targeting domain is 17
nucleotides in length.
42. The nucleic acid of any of claims 31-41, wherein said targeting domain is 18
nucleotides in length.
43. The nucleic acid of any of claims 31-42, wherein said targeting domain is 19
nucleotides in length.
44. The nucleic acid of any of claims 31-43, wherein said targeting domain is 20 nucleotides in length.
45. The nucleic acid of any of claims 31-44, wherein said targeting domain is 21
nucleotides in length.
46. The nucleic acid of any of claims 31-45, wherein said targeting domain is 22
nucleotides in length.
47. The nucleic acid of any of claims 31-46, wherein said targeting domain is 23
nucleotides in length.
48. The nucleic acid of any of claims 31-47, wherein said targeting domain is 24
nucleotides in length.
49. The nucleic acid of any of claims 31-48, wherein said targeting domain is 25
nucleotides in length.
50. The nucleic acid of any of claims 31-49, wherein said targeting domain is 26
nucleotides in length.
51. The nucleic acid of any of claims 31-50, comprising from 5' to 3':
a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain;
a proximal domain; and
a tail domain.
52. The nucleic acid of any of claims 31-51, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; a targeting domain of 17 or 18 nucleotides in length.
53. The nucleic acid of any of claims 31-52, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 25 nucleotides in length; a targeting domain of 17 or 18 nucleotides in length.
54. The nucleic acid of any of claims 31-53, comprising:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; a targeting domain of 17 nucleotides in length.
55. The nucleic acid of any of claims 31-54, comprising: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; a targeting domain of 17 nucleotides in length.
56. The nucleic acid of any of claims 31-55, further comprising: (b) sequence that
encodes a Cas9 molecule.
57. The nucleic acid of claim 56, wherein said Cas9 molecule is an eaCas9 molecule.
58. The nucleic acid of claim 57, wherein said eaCas9 molecule comprises a nickase molecule.
59. The nucleic acid of claim 57 or 58, wherein said eaCas9 molecule forms a double strand break in a target nucleic acid.
60. The nucleic acid of claim 57 or 58, wherein said eaCas9 molecule forms a single strand break in a target nucleic acid.
61. The nucleic acid of claim 60, wherein said single strand break is formed in the strand of the target nucleic acid to which the targeting domain of said gRNA molecule is complementary.
62. The nucleic acid of claim 60, wherein said single strand break is formed in the strand of the target nucleic acid other than the strand to which to which the targeting domain of said gRNA is complementary.
63. The nucleic acid of claim 57 or 58, wherein said eaCas9 molecule comprises HNH- like domain cleavage activity but has no, or no significant, N-terminal RuvC-like domain cleavage activity.
64. The nucleic acid of claim 57, 58, or 63, wherein said eaCas9 molecule is an HNH-like domain nickase.
65. The nucleic acid of claim 57, 58, or 63, or 64, wherein said eaCas9 molecule
comprises a mutation at D10.
66. The nucleic acid of claim 57 or 58, wherein said eaCas9 molecule comprises N- terminal RuvC-like domain cleavage activity but has no, or no significant, HNH-like domain cleavage activity.
67. The nucleic acid of claim 57, 58, or 66, wherein said eaCas9 molecule is an N- terminal RuvC-like domain nickase.
68. The nucleic acid of claim 57, 58, 66, or 67, wherein said eaCas9 molecule comprises a mutation at H840 or N863.
69. The nucleic acid of claim 56, wherein said Cas9 molecule is an eiCas9 molecule.
70. The nucleic acid of claim 56 or 69, wherein said Cas9 molecule is an eiCas9-fusion protein molecule.
71. The nucleic acid of claim 70, wherein the eiCas9 fusion protein molecule is an
eiCas9-transcription repressor domain fusion or eiCas9-chromatin modifying protein fusion.
72. The nucleic acid of any of claims 31-71, further comprising: (c) a sequence that
encodes a second gRNA molecule described herein having a targeting domain that is complementary to a second target domain of the MYOC gene.
73. The nucleic acid of claim 72, wherein said second gRNA molecule is a gRNA
molecule of any of claims 1-30.
74. The nucleic acid of claim 72 or 73, wherein said targeting domain of said second gRNA is configured to provide a cleavage event selected from a double strand break and a single strand break, within 500, 400, 300, 200, 100, 50, 25, or 10 nucleotides of the POAG target point position, a POAG target hotspot mutation, or a POAG target knockout position.
75. The nucleic acid of claim 72 or 73, wherein said targeting domain of said second gRNA is configured to target an enzymatically inactive Cas9 (eiCas9) or an eiCas9 fusion protein, sufficiently close to a POAG knockdown target position to reduce, decrease or repress expression of the MYOC gene.
76. The nucleic acid of any of claims 72-75, wherein said targeting domain of said second gRNA is configured to target the promoter region of the MYOC gene.
77. The nucleic acid of claim 72-76, wherein said targeting domain of said second gRNA comprises a sequence that is the same as, or differs by no more than 3 nucleotides from, a targeting domain sequence from any of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A-10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A-18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
78. The nucleic acid of any of claims 72-77, wherein said targeting domain of said second gRNA comprises a sequence that is the same as a targeting domain sequence from any of Tables 1A-1E, 2A-2E, 3A-3E, 4A-4E, 5A-5F, 6A-6E, 7A-7G, 8A-8E, 9A-9E, 10A- 10G, 11A-11E, 12A-12D, 13A-13E, 14A-14C, 15A-15D, 16A-16E, 17A-17B, 18A- 18D, 19A-19E, 20A-20D, 21A-21D, 22A-22E, or 23A-23B.
79. The nucleic acid of any of claims 72-78, wherein said second gRNA molecule is a modular gRNA molecule.
80. The nucleic acid of any of claims 72-78, wherein said second gRNA molecule is a chimeric gRNA molecule.
81. The nucleic acid of any of claims 72-80, wherein said targeting domain is 16 nucleotides or more in length.
82. The nucleic acid of any of claims 72-81, wherein said targeting domain is 17 nucleotides in length.
83. The nucleic acid of any of claims 72-82, wherein said targeting domain is 18 nucleotides in length.
84. The nucleic acid of any of claims 72-83, wherein said targeting domain is 19 nucleotides in length.
85. The nucleic acid of any of claims 72-84, wherein said targeting domain is 20 nucleotides in length.
86. The nucleic acid of any of claims 72-85, wherein said targeting domain is 21 nucleotides in length.
87. The nucleic acid of any of claims 72-86, wherein said targeting domain is 22 nucleotides in length.
88. The nucleic acid of any of claims 72-87, wherein said targeting domain is 23 nucleotides in length.
89. The nucleic acid of any of claims 72-88, wherein said targeting domain is 24 nucleotides in length.
90. The nucleic acid of any of claims 72-89, wherein said targeting domain is 25 nucleotides in length.
91. The nucleic acid of any of claims 72-90, wherein said targeting domain is 26 nucleotides in length.
92. The nucleic acid of any of claims 72-91 , wherein said second gRNA molecule comprises from 5' to 3' :
a targeting domain;
a first complementarity domain;
a linking domain;
a second complementarity domain;
a proximal domain; and
a tail domain.
93. The nucleic acid of any of claims 72-92, wherein said second gRNA molecule comprises: a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 20 nucleotides in length; a targeting domain of 17 or 18 nucleotides in length.
94. The nucleic acid of any of claims 72-93, wherein said second molecule gRNA
molecule comprises:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 25 nucleotides in length; a targeting domain of 17 or 18 nucleotides in length.
95. The nucleic acid of any of claims 72-94, wherein said second gRNA molecule
comprises:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 30 nucleotides in length; a targeting domain of 17 nucleotides in length.
96. The nucleic acid of any of claims 72-95, wherein said second gRNA molecule
comprises:
a linking domain of no more than 25 nucleotides in length;
a proximal and tail domain, that taken together, are at least 40 nucleotides in length; a targeting domain of 17 nucleotides in length.
97. The nucleic acid of any of claims 72-96, further comprising a third gRNA molecule.
98. The nucleic acid of claim 97, further comprising a fourth gRNA molecule.
99. The nucleic acid of any of claims 31-71, wherein said nucleic acid does not comprise (c) a sequence that encodes a second gRNA molecule.
100. The nucleic acid of any of claims 56-99, wherein each of (a) and (b) is present on the same nucleic acid molecule.
101. The nucleic acid of claim 100, wherein said nucleic acid molecule is an AAV vector.
102. The nucleic acid of any of claims 56-99, wherein: (a) is present on a first nucleic acid molecule; and (b) is present on a second nucleic acid molecule.
103. The nucleic acid of claim 102, wherein said first and second nucleic acid molecules are AAV vectors.
104. The nucleic acid of any of claims 72-98 or 100-103, wherein each of (a) and (c) is present on the same nucleic acid molecule.
105. The nucleic acid of claim 104, wherein said nucleic acid molecule is an AAV vector.
106. The nucleic acid of any of claims 72-98 or 100-103, wherein: (a) is present on a first nucleic acid molecule; and (c) is present on a second nucleic acid molecule.
107. The nucleic acid of claim 106, wherein said first and second nucleic acid molecules are AAV vectors.
108. The nucleic acid of any of claims 72-98, 100, 101, 104, or 105, wherein each of (a), (b), and (c) are present on the same nucleic acid molecule.
109. The nucleic acid of claim 108, wherein said nucleic acid molecule is an AAV vector.
110. The nucleic acid of any of claims 72-98 or 100-107, wherein:
one of (a), (b), and (c) is encoded on a first nucleic acid molecule; and
and a second and third of (a), (b), and (c) is encoded on a second nucleic acid molecule.
111. The nucleic acid of claim 110, wherein said first and second nucleic acid molecules are AAV vectors.
112. The nucleic acid of any of claims 72-98, 102, 103, 106, 107, 110, or 111, wherein: (a) is present on a first nucleic acid molecule; and (b) and (c) are present on a second nucleic acid molecule.
113. The nucleic acid of claim 112, wherein said first and second nucleic acid molecules are AAV vectors.
114. The nucleic acid of any of claims 72-98, 102-105, 110, or 111, wherein: (b) is present on a first nucleic acid molecule; and (a) and (c) are present on a second nucleic acid molecule.
115. The nucleic acid of claim 114, wherein said first and second nucleic acid molecules are AAV vectors.
116. The nucleic acid of any of claims 72-98, 100, 101, 106, 107, 110, or 111, wherein: (c) is present on a first nucleic acid molecule; and (b) and (a) are present on a second nucleic acid molecule.
117. The nucleic acid of claim 116, wherein said first and second nucleic acid molecules are AAV vectors.
118. The nucleic acid of any of claims 102, 106, 110, 112, 114 or 116, wherein said first nucleic acid molecule is other than an AAV vector and said second nucleic acid molecule is an AAV vector.
119. The nucleic acid of any of claims 31-118, wherein said nucleic acid comprises a promoter operably linked to the sequence that encodes said gRNA molecule of (a).
120. The nucleic acid of claims 72-98 or 100-119, wherein said nucleic acid comprises a second promoter operably linked to the sequence that encodes the second gRNA molecule of (c).
121. The nucleic acid of claim 120, wherein the promoter and second promoter differ from one another.
122. The nucleic acid of claim 120, wherein the promoter and second promoter are the same.
123. The nucleic acid of any of claims 56-122, wherein said nucleic acid comprises a promoter operably linked to the sequence that encodes the Cas9 molecule of (b).
124. A composition comprising the (a) gRNA molecule of any of claims 1-30.
125. The composition of claim 124, further comprising (b) a Cas9 molecule of any of claims 56-71.
126. The composition of any of claims 124 or 125, further comprising (c) a second gRNA molecule of any of claims 72-96.
127. The composition of claim 126, further comprising a third gRNA molecule.
128. The composition of claim 127, further comprising a fourth gRNA molecule.
129. A method of altering a cell comprising contacting said cell with:
(a) a gRNA of any of claims 1-30;
(b) a Cas9 molecule of any of claims 56-71 ;
optionally, (c) a second gRNA molecule of any of claims 72-96; and
optionally, (d) a template nucleic acid.
130. The method of claim 129, further comprising a third gRNA molecule.
131. The method of claim 130, further comprising a fourth gRNA molecule.
132. The method of any of claims 129-131, comprising contacting said cell with (a), (b), (c) and optionally (d).
133. The method of any of claims 129-132, wherein said cell is from a subject suffering from POAG.
134. The method of any of claims 129-133, wherein said cell is from a subject having a mutation at a POAG target position of the MYOC gene.
135. The method of any of claims 129-134, wherein said cell is an ocular cell.
136. The method of any of claims 129-134, wherein said cell is a trabecular
meshwork cell.
137. The method of any of claims 129-134, wherein said cell is a retinal pigment cell.
138. The method of any of claims 129-137, wherein said contacting step is performed ex vivo.
139. The method of any of claims 129-138, wherein said contacted cell is returned to said subject's body.
140. The method of any of claims 129-137, wherein said contacting step is
performed in vivo.
141. The method of any of claims 129-140, comprising acquiring knowledge of the presence of the POAG target position mutation in said cell.
142. The method of claim 141, comprising acquiring knowledge of the presence of the POAG target position mutation in said cell by sequencing a portion of the MYOC gene.
143. The method of any of claims 129-142, comprising correcting a POAG target position mutation.
144. The method of any of claims 129-143, wherein the contacting step comprises contacting said cell with a nucleic acid that encodes at least one of (a), (b), (c) and (d).
145. The method of any of claims 129-144, wherein the contacting step comprises contacting the cell with a nucleic acid of any of claims 31-123.
146. The method of any of claims 129-145, wherein the contacting step comprises delivering to said cell said Cas9 molecule of (b) and a nucleic acid which encodes and (a) and optionally (c) and/or (d).
147. The method of any of claims 129-145, wherein the contacting step comprises delivering to said cell said Cas9 molecule of (b), said gRNA molecule of (a) and optionally said second gRNA molecule of (c).
148. The method of any of claims 129-145, wherein the contacting step comprises delivering to said cell said gRNA molecule of (a), optionally said second gRNA molecule of (c) and a nucleic acid that encodes the Cas9 molecule of (b).
149. A method of treating a subject, comprising contacting a subject (or a cell from said subject) with:
(a) a gRNA of any of claims 1-30;
(b) a Cas9 molecule of any of claims 56-71 ;
optionally, (c) a second gRNA of any of claims 72-96; and
optionally, (d) a template nucleic acid.
150. The method of claim 149, further comprising a third gRNA molecule.
151. The method of claim 150, further comprising a fourth gRNA molecule.
152. The method of any of claims 149-151, further comprising contacting said subject with (a), (b), (c) and optionally (d).
153. The method of any of claims 149-152, wherein said subject is suffering from POAG.
154. The method of any of claims 149-153, wherein said subject has a mutation at the POAG target position of the MYOC gene.
155. The method of any of claims 149-154, comprising acquiring knowledge of the presence of the POAG target position mutation in said subject.
156. The method of claim 155, comprising acquiring knowledge of the presence of the POAG target position mutation in said subject by sequencing a portion of the MYOC gene.
157. The method of any of claims 149-156, comprising correcting the POAG target position mutation in the MYOC gene.
158. The method of any of claims 149-157, wherein a cell of said subject is
contacted ex vivo with (a), (b), and optionally (c) and/or (d).
159. The method of claim 158, wherein said cell is returned to the subject's body.
160. The method of any of claims 149-159, wherein treatment comprises
introducing a cell into said subject's body, wherein said cell is contacted ex vivo with (a), (b), and optionally (c) and/or (d).
161. The method of any of claims 149-157, wherein said contacting step is
performed in vivo.
162. The method of claim 149-157 or 161, wherein said contacting step comprises subretinal delivery.
163. The method of claim 149-157 or 161, wherein said contacting step comprises subretinal injection.
164. The method of claim 149-157 or 161, wherein said contacting step comprises intravitreal delivery.
165. The method of claim 149-157 or 161, wherein said contacting step comprises intravitreal injection.
166. The method of any of claims 149-165, wherein the contacting step comprises contacting said subject with a nucleic acid that encodes at least one of (a), (b), and (c).
167. The method of any of claims 149-166, wherein the contacting step comprises contacting said subject with a nucleic acid of any of any of claims 31-123.
168. The method of any of claims 149-167, wherein the contacting step comprises delivering to said subject said Cas9 molecule of (b) and a nucleic acid which encodes and (a) and optionally (c), and optionally (d).
169. The method of any of claims 149-167, wherein the contacting step comprises delivering to said subject said Cas9 molecule of (b), said gRNA of (a) and optionally said second gRNA of (c), and optionally said template nucleic acid of (d).
170. The method of any of claims 149-167, wherein the contacting step comprises delivering to said subject said gRNA of (a), optionally said second gRNA of (c) and a nucleic acid that encodes the Cas9 molecule of (b).
171. A reaction mixture comprising a gRNA, a nucleic acid, or a composition described herein, and a cell from a subject having POAG, or a subject having a mutation at a POAG target position of the MYOC gene.
172. A kit comprising, (a) gRNA molecule of any of claims 1-30, or a nucleic acid that encodes said gRNA, and one or more of the following:
(b) a Cas9 molecule of any of claims 56-71 ;
(c) a second gRNA molecule of any of claims 72-96;
(d) a template nucleic acid; and
(e) a nucleic acid that encodes one or more of (b) and (c).
173. The kit of claim 172, comprising nucleic acid that encodes one or more of (a), (b) (c) and (d).
174. The kit of claim 173, further comprising a third gRNA molecule targeting a POAG target position.
175. The kit of claim 174, further comprising a fourth gRNA molecule targeting a POAG target position.
176. A gRNA molecule of any of claims 1-30 for use in treating POAG in a
subject.
177. The gRNA molecule of claim 176, wherein the gRNA molecule is used in combination with (b) a Cas9 molecule of any of claims 56-71.
178. The gRNA molecule of claim 176 or 177, wherein the gRNA molecule is used in combination with (c) a second gRNA molecule of any of claims 72-96.
179. Use of a gRNA molecule of any of claims 1-30 in the manufacture of a
medicament for treating POAG in a subject.
180. The use of claim 179, wherein the medicament further comprises (b) a Cas9 molecule of any of claim 56-71.
181. The use of claim 179 or 180, wherein the medicament further comprises (c) a second gRNA molecule of any of claim 72-96.
182. A composition of any of claims 124-128 for use in treating POAG in a subject.
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