WO2014143994A3 - Methods and compositions for evaluating genetic markers - Google Patents

Methods and compositions for evaluating genetic markers Download PDF

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Publication number
WO2014143994A3
WO2014143994A3 PCT/US2014/028212 US2014028212W WO2014143994A3 WO 2014143994 A3 WO2014143994 A3 WO 2014143994A3 US 2014028212 W US2014028212 W US 2014028212W WO 2014143994 A3 WO2014143994 A3 WO 2014143994A3
Authority
WO
WIPO (PCT)
Prior art keywords
compositions
methods
genetic markers
evaluating genetic
genetic loci
Prior art date
Application number
PCT/US2014/028212
Other languages
French (fr)
Other versions
WO2014143994A2 (en
Inventor
Gregory Porreca
Mark UMBARGER
Original Assignee
Good Start Genetics, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US13/934,093 external-priority patent/US20130337447A1/en
Application filed by Good Start Genetics, Inc. filed Critical Good Start Genetics, Inc.
Priority to CA2907177A priority Critical patent/CA2907177A1/en
Priority to EP14762322.7A priority patent/EP2971114A4/en
Publication of WO2014143994A2 publication Critical patent/WO2014143994A2/en
Publication of WO2014143994A3 publication Critical patent/WO2014143994A3/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Pathology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

Aspects of the invention relates to methods and compositions that are useful to reduce bias and increase the reproducibility of multiplex analysis of genetic loci. In some configurations, predetermined preparative steps and/or nucleic acid sequence analysis techniques are used in multiplex analyses for a plurality of genetic loci in a plurality of samples.
PCT/US2014/028212 2013-03-15 2014-03-14 Methods and compositions for evaluating genetic markers WO2014143994A2 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
CA2907177A CA2907177A1 (en) 2013-03-15 2014-03-14 Methods and compositions for evaluating genetic markers
EP14762322.7A EP2971114A4 (en) 2013-03-15 2014-03-14 Methods and compositions for evaluating genetic markers

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US201361789164P 2013-03-15 2013-03-15
US61/789,164 2013-03-15
US13/934,093 2013-07-02
US13/934,093 US20130337447A1 (en) 2009-04-30 2013-07-02 Methods and compositions for evaluating genetic markers

Publications (2)

Publication Number Publication Date
WO2014143994A2 WO2014143994A2 (en) 2014-09-18
WO2014143994A3 true WO2014143994A3 (en) 2015-02-19

Family

ID=51538293

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2014/028212 WO2014143994A2 (en) 2013-03-15 2014-03-14 Methods and compositions for evaluating genetic markers

Country Status (3)

Country Link
EP (1) EP2971114A4 (en)
CA (1) CA2907177A1 (en)
WO (1) WO2014143994A2 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
FR3055338B1 (en) * 2016-09-01 2020-05-29 Centre National De La Recherche Scientifique METHOD FOR IN VITRO DETECTION AND IDENTIFICATION OF ONE OR MORE MICROORGANISMS INVOLVED IN THE DEGRADATION, MODIFICATION OR SEQUENCING PROCESS OF ONE OR MORE CONTAMINANTS PRESENT IN A BIOLOGICAL SAMPLE
CN112029841B (en) * 2019-06-03 2024-02-09 香港中文大学 Method for quantifying telomere length and genomic motifs

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20070162983A1 (en) * 2003-11-19 2007-07-12 Evotec Neurosciences Gmbh Diagnostic and therapeutic use of the human sgpl1 gene and protein for neurodegenerative diseases
WO2010126614A2 (en) * 2009-04-30 2010-11-04 Good Start Genetics, Inc. Methods and compositions for evaluating genetic markers
US20120165202A1 (en) * 2009-04-30 2012-06-28 Good Start Genetics, Inc. Methods and compositions for evaluating genetic markers

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2888779A1 (en) * 2012-11-07 2014-05-15 Good Start Genetics, Inc. Validation of genetic tests

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20070162983A1 (en) * 2003-11-19 2007-07-12 Evotec Neurosciences Gmbh Diagnostic and therapeutic use of the human sgpl1 gene and protein for neurodegenerative diseases
WO2010126614A2 (en) * 2009-04-30 2010-11-04 Good Start Genetics, Inc. Methods and compositions for evaluating genetic markers
US20120165202A1 (en) * 2009-04-30 2012-06-28 Good Start Genetics, Inc. Methods and compositions for evaluating genetic markers

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
See also references of EP2971114A4 *
THIYAGARAJAN, S ET AL., PATHOGENMIPER: A TOOL FOR THE DESIGN OF MOLECULAR INVERSION PROBES TO DETECT MULTIPLE PATHOGENS., 14 November 2006 (2006-11-14), pages PAGE 2 , PAGE 3, XP021021640 *

Also Published As

Publication number Publication date
EP2971114A4 (en) 2016-11-23
CA2907177A1 (en) 2014-09-18
EP2971114A2 (en) 2016-01-20
WO2014143994A2 (en) 2014-09-18

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