WO2014017915A2 - Urea and guanidinium derivatives of iminosugars - Google Patents

Urea and guanidinium derivatives of iminosugars Download PDF

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WO2014017915A2
WO2014017915A2 PCT/NL2013/050562 NL2013050562W WO2014017915A2 WO 2014017915 A2 WO2014017915 A2 WO 2014017915A2 NL 2013050562 W NL2013050562 W NL 2013050562W WO 2014017915 A2 WO2014017915 A2 WO 2014017915A2
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acid
trihydroxy
hydroxymethyl
carboximidamide
piperidine
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WO2014017915A3 (en
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Roelof Jan Pieters
Nathaniel Isaac MARTIN
Hilbert Marinus BRANDERHORST
Raymond KOOIJ
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Universiteit Utrecht Holding B.V.
Stichting Voor De Technische Wetenschappen
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D211/00Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings
    • C07D211/04Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
    • C07D211/06Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members
    • C07D211/36Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
    • C07D211/40Oxygen atoms
    • C07D211/44Oxygen atoms attached in position 4
    • C07D211/46Oxygen atoms attached in position 4 having a hydrogen atom as the second substituent in position 4
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02PCLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
    • Y02P20/00Technologies relating to chemical industry
    • Y02P20/50Improvements relating to the production of bulk chemicals
    • Y02P20/55Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups

Definitions

  • the present invention pertains to derivatives of iminosugars, in particular to urea and guanidinium derivatives of iminosugars, their salts, tautomers, enantiomers and stereoisomers.
  • the invention further relates to methods for making guanidinium derivatives of iminosugars, the synthesis of relevant intermediates, and certain thioureas.
  • the invention further relates to pharmaceutical compositions comprising the compounds of the invention and to methods of inhibiting or modifying the activity of glycosidase enzymes as well as methods for the treatment of diseases using the compounds of the invention.
  • Glycosidases are important enzymes in nature that cleave carbohydrate units.
  • glycosidases cleave the glycosidic bonds in oligosaccharides
  • glycoconjugates There are approximately 100 different glycosidases known in humans. Since they are involved in many areas of biology, their malfunction also can lead to disease. For this reason the inhibition of glycosidase has been an important goal in science and therapeutics (N. Asano, Cell. Mol. Life. Sci. 2009, 66, 1479-1492.). Major progress has been made in this area by chemical synthesis and also compounds from natural sources have been discovered with special properties.
  • the natural product deoxynojirimycin (DNJ) 1 from mulberry leaves was a major discovery and was found to be a potent inhibitor for numerous glycosidases. Alkylation of its nitrogen led to additional compounds with a more specific activity profile.
  • DNJ deoxynojirimycin
  • glycosidases can aid in the treatment of diabetes ( L. K. Campbell, D. E. Baker, R. K. Campbell, R. K., Ann. Pharmacother. 2000, 34, 1291-1301.) viral infections (M. von Itzstein, Curr. Opin. Chem. Biol. 2008, 12, 102-108.), lysosomal storage diseases (B. E. Smid, J. M. F. G. Aerts, R. G. Boot, G. E. Linthorst, C. E. M. Hollak, Exp. Opin. on Investig. Drugs, 2010, 19, 1367-1379.) and cancer (D. A. Kuntz, S. Nakayama, K. Shea, H.
  • Iminosugars have been shown to be highly effective inhibitors but their limited selectivity can lead to side effects when applied therapeutically ⁇ G. Home, F. X. Wilson, J. Tinsley, D. H. Williams, R. Storer, Drug Disc. Today 2011 , 16, 107-118; E. Borges de Melo, A. da Silveira Gomes, I. Carvalho, Tetrahedron, 2006, 62, 10277-10302.) It is clear that exploring additional iminosugar derivatives while also improving upon the selectivity of iminosugars as glycosidase inhibitors are important challenges.
  • J P60-224675 describes certain iminosugars that are substituted at the nitrogen with a carboxamide group.
  • US 4806650 describes processes for preparing alkyl or aralkyi N-substituted 1-deoxynojirimycins based on converting D-glucose to aminosorbitol.
  • US6177447 describes deoxynojirimicin derivatives substituted (optionally via spacers) with large hydrophilic groups.
  • WOOO/33843 describes long chain N-alkyl derivatives of 1-deoxynojirimycin in the treatment of glycolipid storage diseases. Further derivatives are described in US2006/011 14000, US5273981 , EP536402,
  • conformationally locked sp 2 -iminosugars such as 5-N, 6-S-[N'-(n-octyliminomethylidene]-6- thionojirimycin as an inhibitor of lysosomal beta glucosidase.
  • Aguilar et al. (Aguilar et al.
  • Tetrahedron 68, 2012, 681-689 describes isourea-type bicyclic sp2-iminosugars as potential glycosidase inhibitors.
  • Aguilar et al. (Aguilar et al. J. Org. Chem 2008, 73, 1995-1998) describes guanidine-type iminosugars as glucosidase inhibitors and describes a method for the synthesis of the N-amidinoylpiperidine azasugars. The method is complex and laborious and is not suitable for the preparation of a wide variety of guanidine-type iminosugars, preferred for a qualitative broad evaluation of the potential pharmaceutical properties. Bini D.
  • the present inventors have now found new urea and guanidinium derivatives of iminosugars and in particular of new urea and guanidinium derivatives of deoxynojirimicin. Furthermore, they have found an efficient method for the synthesis of a wide variety of these compounds as well as methods for modifying the specific inhibitory activity towards various glycosidases using the compounds of the invention.
  • glycosidases The derivatized urea, and guanidinium derivatives prepared were screened against a series of glycosidases and showed advantageous inhibition profiles. Incorporation of the guanidine moiety in iminosugars led to enhanced potency against several glycosidases whereas the neutral urea counterpart also proved to be a very selective inhibitor.
  • Figure 3 IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1-deoxynojirimycin) and Alkylated (8) (N-Hexyl-1-deoxynojirimycin) against alpha-glucosidase (from Bakers yeast G5003).
  • X is O or NR 7 ;
  • R 3 , R 4 , R 5 , R6 are independently H or a hydroxyl protecting group
  • R 7 is H, C1-C6 alkyl
  • the invention does not encompass a compound selected form the group consisting of ((2f?,3f?,4S)-1-(/V-Phenylamidinoyl)-3,4,5,5-tetrahydroxy-2- hydroxymethylpiperidine;(2f?,3f?,4S)-1-(/ ⁇ /'-Benzyl-/ ⁇ /"-phenylamidinoyl)-3,4,5,5-tetrahydroxy- 2-hydroxymethylpiperidine and (2f?,3f?,4S)-1-(/V',/ ⁇ /"-Dibenzylamidinoyl)-3,4,5,5-tetrahydroxy- 2-hydroxymethylpiperidine;such as described in Aguilar ef al.
  • the nitrogen-containing heterocycle in the compound is a six- membered nitrogen-containing heterocycle and more preferably is a piperidine-based structure, the compound pre
  • the substituents R 1 and R 2 are, independently, selected from H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-20 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms.
  • the nitrogen containing heterocycle of the present invention is a 5, 6, 7 or 8- membered (saturated) nitrogen-containing cyclic compound.
  • the chemistry for these nitrogen containing cyclic compound is described in Stocker, B. L; Dangerfield, E. M.; Win-Mason, A. L; Haslett, G. W.; Timmer, M. S. M. Eur. J. Org. Chem. 2010, 1615-1637 and in Dragutan, I.; Dragutan, V.; Mitan, C; Vosloo, H. C. M.; Delaude, L; Demonceau, A. Beilstein J. Org.
  • the R 3 and R 4 substituted hydroxyl groups on the nitrogen-containing cyclic compound have a orientation selected from the group consisting of
  • the R 5 and R 6 substituted hydroxyl groups on the nitrogen-containing cyclic compound may also have orientations selected from the group consisting of
  • piperidine-based iminocyclitols such as 1-deoxymannonojiromycin, 1- deoxyaltronojiromycin, 1-deoxygalactonojirimycin and 1-deoxyallonojiromycin
  • R 1 is H or a straight or branched alkyl or cycloalkyl, containing 1-20 carbon atoms, preferably H or a straight alkyl containing 1-12 carbon atoms, more preferably H, ethyl, butyl, hexyl, octyl and their structural isomers.
  • R 2 is H or a straight or branched alkyl or cycloalkyl, containing 1-20 carbon atoms, preferably H or a straight alkyl containing 1-12 carbon atoms, more preferably H.
  • the hydroxyl-protecting group in the general formula of the compounds of the invention is typically a hydrolysable group that is capable of forming an ester or ether bond with the hydroxyls on the ring or the CH 2 OH.
  • the protecting group can either shield the hydroxyl or serve as a prodrug which can be hydrolysed by the organism. Suitable protecting groups are for instance described in Greene's Protective Groups in Organic Synthesis, Fourth
  • Hydroxyl protecting groups can be selected from amongst Acetyl (Ac), Benzoyl (Bz),
  • TOM triisopropylsilyl
  • EE Ethoxyethyl ethers
  • Preferred hydroxyl protecting group is benzyl (bn).
  • the compounds of the present invention contain one or more nitrogen atoms that may be transformed into their pharmaceutically acceptable salts by contacting the compound with a suitable acid as a salt forming compound.
  • Preferred compounds of the present invention are the hydrochloride salts of the guanidinium compounds of the present invention and in particular:
  • hydrochloride compounds of the present invention can be converted into other pharmaceutically acceptable salts using conventional procedures wherein one salt of the compound is exchanged for another salt, usually via the free base of the compound as an intermediate.
  • salts can be made using a variety of salt-forming components, usually acids such as those selected from the group consisting of 1-hydroxy-2-naphthoic acid, 2,2- dichloroacetic acid, 2-hydroxyethanesulfonic acid, 2-oxoglutaric acid, 4-acetamidobenzoic acid, 4-aminosalicylic acid, acetic acid, adipic acid, ascorbic acid (L), aspartic acid (L), benzenesulfonic acid, benzoic acid, camphoric acid (+), camphor-10-sulfonic acid (+), capric acid (decanoic acid), caproic acid (hexanoic acid), caprylic acid (octanoic acid), carbonic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfuric acid, ethane-1 ,2-disulfonic acid, ethanesulfonic acid, formic acid, fumaric acid, galactaric acid,
  • alkyl refers to a straight or branched C1-C20 hydrocarbon group consisting solely of carbon and hydrogen atoms, containing no unsaturation, and which is attached to the rest of the molecule by a single bond, e.g., methyl, ethyl, n-propyl, 1-methylethyl
  • alkyls used herein are preferably C1 - C12 alkyls.
  • alkenyl refers to a C2-C20 aliphatic hydrocarbon group containing at least one carbon-carbon double bond and which may be a straight or branched chain, e.g., ethenyl, 1-propenyl, 2-propenyl (allyl), iso-propenyl, 2-methyl- 1-propenyl, 1-butenyl, 2-butenyl.
  • alkynyl refers to a C2-C20 aliphatic hydrocarbon group containing at least one carbon-carbon triple bond and which may be a straight or branched chain, e.g., ethynyl, 1-propynyl, 2-propynyl (propargyl).
  • cycloalkyl denotes an unsaturated, non-aromatic mono- or multicyclic hydrocarbon ring system such as cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl.
  • multicyclic cycloalkyl groups include perhydronapththyl, adamantyl and norbornyl groups bridged cyclic group or sprirobicyclic groups, e.g., spiro (4,4) non-2-yl.
  • cycloalkalkyl refers to a cycloalkyl as defined above directly attached to an alkyl group as defined above, that results in the creation of a stable structure such as cyclopropylmethyl, cyclobutylethyl, cyclopentylethyl.
  • alkyl ether or “alkoxyalkyl” refers to an alkyl group or cycloalkyl group as defined above having at least one oxygen incorporated into the alkyl chain, e.g., methyl ethyl ether, diethyl ether, tetrahydrofuran.
  • aminoalkyl refers to an alkyl group or a cycloalkyl group as defined above having at least one nitrogen atom, e.g., n-butyl amine and tetrahydrooxazine.
  • aryl refers to aromatic radicals having in the range of about 6 to about 14 carbon atoms such as phenyl, naphthyl, tetrahydronapthyl, indanyl, biphenyl.
  • arylalkyl refers to an aryl group as defined above directly bonded to an alkyl group as defined above, e.g., -CH2C6H5, and -C2H4C6H5.
  • alkylaryl sometimes refers to an alkyl group as defined above directly bonded to an aryl group as defined above, e.g., - C6H4CH3, and -C6H4C2H5.
  • heterocyclic refers to a stable 3- to 15-membered ring radical which consists of carbon atoms and from one to five heteroatoms selected from the group consisting of nitrogen, phosphorus, oxygen and sulfur.
  • the heterocyclic ring radical may be a monocyclic, bicyclic or tricyclic ring system, which may include fused, bridged or spiro ring systems, and the nitrogen, phosphorus, carbon, oxygen or sulfur atoms in the heterocyclic ring radical may be optionally oxidized to various oxidation states.
  • the nitrogen atom may be optionally quaternized; and the ring radical may be partially or fully saturated (i.e., heteroaromatic or heteroaryl aromatic).
  • heterocyclic ring radicals include, but are not limited to, azetidinyl, acridinyl, benzodioxolyl, benzodioxanyl, benzofurnyl, carbazolyl, cinnolinyl, dioxolanyl, indolizinyl, naphthyridinyl, perhydroazepinyl, phenazinyl, phenothiazinyl, phenoxazinyl, phthalazinyl, pyridyl, pteridinyl, purinyl, quinazolinyl, quinoxalinyl, quinolinyl, isoquinolinyl, tetrazoyl, imidazolyl,
  • heterocyclic ring radical may be attached to the main structure at any heteroatom or carbon atom that results in the creation of a stable structure.
  • heteroaryl refers to a heterocyclic ring wherein the ring is aromatic.
  • heteroarylalkyl refers to heteroaryl ring radical as defined above directly bonded to alkyl group.
  • the heteroarylalkyl radical may be attached to the main structure at any carbon atom from alkyl group that results in the creation of a stable structure.
  • heterocyclyl refers to a heterocylic ring radical as defined above.
  • the heterocyclyl ring radical may be attached to the main structure at any heteroatom or carbon atom that results in the creation of a stable structure.
  • heterocyclylalkyi refers to a heterocylic ring radical as defined above directly bonded to alkyl group.
  • the heterocyclylalkyi radical may be attached to the main structure at carbon atom in the alkyl group that results in the creation of a stable structure.
  • halogen refers to radicals of fluorine, chlorine, bromine and iodine.
  • R 3 , R 4 , R 5 , R 6 are independently H or a hydroxyl protecting group
  • R 7 is H, C1-C6 alkyl
  • the method starts with the preparation of the suitably protected iminosugar using conventional technologies (Wennekes, T.; Lang, B.; Leeman, M.; van der Marel, G.A.; Smits, E.; Weber, M.; van Wiltenburg, J.; Wolberg, M.; Aerts, J.M.F.G.; Overkleeft, H.S. J. Org. Chem. 2007, 72, 1088-1097.
  • the preferred protecting group is benzyl.
  • R 3 , R 4 , R 5 , R6 are independently H or a hydroxyl protecting group
  • R 7 is H, C1-C6 alkyl.
  • a thiourea intermediate is prepared from a substituted amine (R 1 R 2 NH), preferably a substituted primary amine R 1 NH 2 and Cbz-NCS.
  • Cbz-NCS is prepared according to Martin, N.I. et al. (2006) Organic Letters, 8, 4035-4036.
  • Alternative reagents are Fmoc-NCS and Pbf- NCS.
  • the thiourea intermediate is reacted in the presence of an activating agent with the protected iminosugars leading to a protected guanidinium compound which can subsequently be hydrogenolysed, for instance using hydrogen with Pd/C in the presence of trace amount of HCI to provide the hydrochloride salt of the guanidinium derivative of the iminosugar.
  • the hydrochloride salt of the guanidinium derivative of the iminosugar can be converted to yield other amine salts using conventional techniques such as described in Stahl et al. 'Handbook of pharmaceutical salts, properties, selection and use", Wiley-VCH, 2008.
  • the protons on the guanidium nitrogens can be, independently further derivatized, for instance alkylated, using conventional technology.
  • the invention further relates to a method for modifying (increasing, reducing) glycosidase activity by contacting the glycosidase with an effective amount of one of the compounds of the invention.
  • the glycosidase can be any glycosidase but is preferably selected from the group consisting of alpha-galactosidase, beta-galactosidase, alpha- glucosidase, beta glucosidase, alpha-mannosidase, beta-mannosidase, naringinase, sialidase, and neuraminidase.
  • the glycosidase is a purified or recombinant functional glycosidase enzyme. The contacting of the glycosidase can be in vitro or in vivo , depending on the circumstances.
  • the compounds of the invention display activity, preferably an inhibiting activity against various glycosidases. Having an inhibiting activity of a compound vis-a-vis an enzyme is usually expressed as the IC50 value. To compare compounds the IC50 values can be taken relatively. The relative inhibiting activity of compounds towards a certain enzyme can then be expressed in %.
  • the compounds of the present preferably express an inhibitory activity that is significantly higher than currently known compounds towards specific glycosidase enzymes, preferably at least 5, 10, 15, 20, 25 or 50 % higher than currently known compounds such as DNJ at given concentration.
  • the invention further relates to a method for the treatment of glycosidase-activity related ailments of which non-limiting examples are Pompe's disease, a glycolipid storage disease such as Gaucher's disease, Tay Sachs disease, Sandhoff disease, Fabry disease, GM1 gangliodosis, and fucosidosis, lysosomal storage disorders, diabetes, viral infections, HIV, Human hepatitis C (HCV), dengue virus, tuberculosis, Niemann-Pick diseases and cancer comprising administering to an individual in need thereof an effective amount of a compound according to the invention and to a pharmaceutical composition comprising a compound according to the invention and a pharmaceutically acceptable carrier.
  • Pompe's disease a glycolipid storage disease
  • Tay Sachs disease such as Gaucher's disease, Tay Sachs disease, Sandhoff disease, Fabry disease, GM1 gangliodosis, and fucosidosis
  • lysosomal storage disorders diabetes, viral infections, HIV, Human hepatit
  • Novel guanidinium derivatives of 1-deoxynojirimycin were prepared using a concise synthetic protocol and will be tested against a panel of glycosidases for their inhibitory properties.
  • the compound is deprotected using the herein described method and tested in an enzymatic assay as described herein elsewhere.
  • the activity of the compound against various galactosidases is noted.
  • the compound is deprotected using the herein described method and tested in an enzymatic assay as described herein elsewhere.
  • the activity of the compound against various galactosidases is noted.
  • Glycosidases used in the inhibition studies were purchased from Sigma; a- galactosidase (from green coffee beans; G8507), ⁇ -galactosidase (from bovine liver, G1875), a-glucosidase (from bakers yeast; G5003), ⁇ -glucosidase (from almonds; G451 1), a- mannosidase (from Jack beans; M7257), ⁇ -mannosidase (from Helix pomatia; M9400) and Naringinase (from Penicillium decumbens; N 1385).
  • the corresponding p-nitrophenyl glycosides substrates were purchased from Carbosynth Limited.
  • Inhibition assays were performed in either phosphate or acetate buffer at the optimum pH for each enzyme. Determination of the IC 50 values of the iminosugars were carried out by spectrophotometrically measuring the residual hydrolytic activities of the glycosidases on the corresponding p-nitrophenyl glycosides substrate in the presence of a concentration range of iminosugar derivatives. The incubation mixture consisted of 15 ⁇ _ of inhibitor solution in water (0.1 U/mL) and 15 ⁇ _ of enzyme solution. The concentrations of the enzyme were adjusted so that the reading for the final absorbance was in the range of 0.5 - 1.5 units.
  • Inhibitor and enzyme solutions were mixed in a disposable 96-well microtiter plate and then incubated at room temperature for 5 minutes. Next the reactions were initiated by addition of 75 ⁇ _ of a solution of the corresponding p-nitrophenyl glycosides substrate solution in the appropriate buffer at the optimum pH for the enzyme. After the reaction mixture was incubated at 37 °C for 30 min, the reaction was quenched with 0.5M Na 2 C0 3 (240 ⁇ _) and the absorbance of 4-nitrophenol released from the substrate was read immediately at 405 nm using a BioTek ⁇ Microplate Spectrophotometer.
  • IC 50 values were determined as a concentration of the iminosugars that inhibits 50% of the enzyme activity under the assay conditions. IC 50 values were determined graphically with GraphPad Prism (version 5.0) by making a plot of percentage inhibition versus the log of inhibitor concentration, using at least 8 different inhibitor concentrations (triplicate). [83] The results for various enzymes and iminosugars are presented in the Figures 1-7 and in tables below.
  • Beta galactosidase 3 >1000 215 5 6 6 (Bovine liver G1875)

Abstract

The invention relates to novel urea and guanidinium derivatives of deoxynojirimycin and related iminosugars, wherein the ring nitrogen in the iminosugars is derivatised, methods for the preparation urea and guanidinium derivatives of deoxynojirimycin, (protected) intermediates and the use of the urea and guanidinium derivatives of deoxynojirimycinin the modification of the activity of glycosidases and their use as a pharmaceutical.

Description

Title: Urea and Guanidinium derivatives of iminosugars
Description
Technical Field
[01] The present invention pertains to derivatives of iminosugars, in particular to urea and guanidinium derivatives of iminosugars, their salts, tautomers, enantiomers and stereoisomers. The invention further relates to methods for making guanidinium derivatives of iminosugars, the synthesis of relevant intermediates, and certain thioureas. The invention further relates to pharmaceutical compositions comprising the compounds of the invention and to methods of inhibiting or modifying the activity of glycosidase enzymes as well as methods for the treatment of diseases using the compounds of the invention.
Background Art
[02] Glycosidases are important enzymes in nature that cleave carbohydrate units.
Specifically, glycosidases cleave the glycosidic bonds in oligosaccharides and
glycoconjugates. There are approximately 100 different glycosidases known in humans. Since they are involved in many areas of biology, their malfunction also can lead to disease. For this reason the inhibition of glycosidase has been an important goal in science and therapeutics (N. Asano, Cell. Mol. Life. Sci. 2009, 66, 1479-1492.). Major progress has been made in this area by chemical synthesis and also compounds from natural sources have been discovered with special properties. The natural product deoxynojirimycin (DNJ) 1 from mulberry leaves was a major discovery and was found to be a potent inhibitor for numerous glycosidases. Alkylation of its nitrogen led to additional compounds with a more specific activity profile. This led to the registration of the drugs Miglitol® (Glyset) 2 against diabetes and Zavesca® (Miglustat) 3 against Gaucher's disease, both derivatives of deoxynojirimycin However, due to the lack of selectivity, side effects are a major problem with these types of
Figure imgf000002_0001
[03] The blocking of glycosidases can aid in the treatment of diabetes ( L. K. Campbell, D. E. Baker, R. K. Campbell, R. K., Ann. Pharmacother. 2000, 34, 1291-1301.) viral infections (M. von Itzstein, Curr. Opin. Chem. Biol. 2008, 12, 102-108.), lysosomal storage diseases (B. E. Smid, J. M. F. G. Aerts, R. G. Boot, G. E. Linthorst, C. E. M. Hollak, Exp. Opin. on Investig. Drugs, 2010, 19, 1367-1379.) and cancer (D. A. Kuntz, S. Nakayama, K. Shea, H. Hori, Y. Uto, H. Nagasawa, D. R. Rose, ChemBioChem, 2010, 11 , 673-680.). Iminosugars have been shown to be highly effective inhibitors but their limited selectivity can lead to side effects when applied therapeutically^ G. Home, F. X. Wilson, J. Tinsley, D. H. Williams, R. Storer, Drug Disc. Today 2011 , 16, 107-118; E. Borges de Melo, A. da Silveira Gomes, I. Carvalho, Tetrahedron, 2006, 62, 10277-10302.) It is clear that exploring additional iminosugar derivatives while also improving upon the selectivity of iminosugars as glycosidase inhibitors are important challenges.
[04] Several solutions have been proposed in the art. J P60-224675 describes certain iminosugars that are substituted at the nitrogen with a carboxamide group. US 4806650 describes processes for preparing alkyl or aralkyi N-substituted 1-deoxynojirimycins based on converting D-glucose to aminosorbitol. US6177447 describes deoxynojirimicin derivatives substituted (optionally via spacers) with large hydrophilic groups. WOOO/33843 describes long chain N-alkyl derivatives of 1-deoxynojirimycin in the treatment of glycolipid storage diseases. Further derivatives are described in US2006/011 14000, US5273981 , EP536402,
WO2006/125141. Aguilar ef al. (Chem. Comm. 2012, 48, 6514-6516) describe
conformationally locked sp2-iminosugars such as 5-N, 6-S-[N'-(n-octyliminomethylidene]-6- thionojirimycin as an inhibitor of lysosomal beta glucosidase. Aguilar et al. (Aguilar et al.
Tetrahedron 68, 2012, 681-689) describes isourea-type bicyclic sp2-iminosugars as potential glycosidase inhibitors. Aguilar et al. (Aguilar et al. J. Org. Chem 2008, 73, 1995-1998) describes guanidine-type iminosugars as glucosidase inhibitors and describes a method for the synthesis of the N-amidinoylpiperidine azasugars. The method is complex and laborious and is not suitable for the preparation of a wide variety of guanidine-type iminosugars, preferred for a qualitative broad evaluation of the potential pharmaceutical properties. Bini D. et al., Beilstein Journal of Organic Chemistry, (8), 2012, 514-521 , April 5, 2012 describes certain iminosugars including a nojiromicin-based inhibitor having a monosubstituted urea (DNJ(CO)NH2) that are tested as porcine and insect trehalases but not as a glycosidase inhibitor.
[05] Given the variations in activity and selectivity of known iminosugars vis-a-vis various glycosidases, there remains a need for further variations in the principal structure of the iminosugars-based compounds to further enhance the effectiveness, applicability and therapeutic feasibility of iminosugars. Summary of Invention
[06] The present inventors have now found new urea and guanidinium derivatives of iminosugars and in particular of new urea and guanidinium derivatives of deoxynojirimicin. Furthermore, they have found an efficient method for the synthesis of a wide variety of these compounds as well as methods for modifying the specific inhibitory activity towards various glycosidases using the compounds of the invention.
[07] Furthermore the inventors have successfully devised a straightforward route to a new class of iminosugar analogues and investigated their ability to inhibit a variety of
glycosidases. The derivatized urea, and guanidinium derivatives prepared were screened against a series of glycosidases and showed advantageous inhibition profiles. Incorporation of the guanidine moiety in iminosugars led to enhanced potency against several glycosidases whereas the neutral urea counterpart also proved to be a very selective inhibitor.
Incorporation of the guanidinium-group in iminosugars alters both the steric and electronic properties of the iminosugar in an advantageous way. Without being bound by theory, it is thought that its charge is likely more delocalized than in the case of the N-alkylated iminosugars. Furthermore, due to the degree of sp2 hybridisation of the ring nitrogen, the ring conformation is likely slightly altered. Taken together these effects result in a potent inhibitory motif for a range of glycosidases that can be introduced using a concise and straightforward synthetic approach. It is also worth noting that some of the compounds bear a relatively simple alkyl substituent at the guanidine.
Brief Description of Drawings
[08] Figure ! IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1-deoxynojirimycin) and Alkylated (8) (N-Hexyl-1-deoxynojirimycin) against alpha-galactosidase (from green coffee beans; G8507).
[09] Figure 2. IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1-deoxynojirimycin) and Alkylated (8) (N-Hexyl-1-deoxynojirimycin) against beta-galactosidase (from Bovine liver G1875).
[10] Figure 3. IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1-deoxynojirimycin) and Alkylated (8) (N-Hexyl-1-deoxynojirimycin) against alpha-glucosidase (from Bakers yeast G5003).
[11] Figure 4. IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1-deoxynojirimycin) and Alkylated (8) (N-Hexyl-1-deoxynojirimycin) against beta-glucosidase (from Almonds G4511).
[12] Figure 5. IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1 -deoxynojirimycin) and Alkylated (8) (N-Hexyl-1 -deoxynojirimycin) against alpha-mannosidase (from Jack Beans M7257).
[13] Figure 6. IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1 -deoxynojirimycin) and Alkylated (8) (N-Hexyl-1 -deoxynojirimycin) against beta-mannosidase (from Helix pomatia M9400). [14] Figure 7. IC50 determination of Guanidinium (13) (N-1-butylguanidine-1- deoxynojirimycin, 1-DNJ (1), Urea (10) (N-1-butylurea-1-deoxynojirimycin) and Alkylated (8) (N-Hexyl-1-deoxynojirimycin) against Naringinase (from Penicillium decimbens N1385).
Detailed description of the invention
[15] Thus, in a first aspect the invention pertains to a compound represented by the general formula
wherein
Figure imgf000005_0001
is a 5, 6, 7 or 8-membered (saturated) nitrogen-containing cyclic compound;
wherein X is O or NR7;
wherein R1 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-20 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1is optionally substituted with one or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2;
wherein R2 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-12 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1is optionally substituted with one or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2;
wherein R3, R4, R5, R6 are independently H or a hydroxyl protecting group,
wherein R7 is H, C1-C6 alkyl;
and pharmaceutically acceptable salts, tautomers, enantiomers stereoisomers and/or esters thereof.
[16] In one embodiment, the invention does not encompass a compound selected form the group consisting of ((2f?,3f?,4S)-1-(/V-Phenylamidinoyl)-3,4,5,5-tetrahydroxy-2- hydroxymethylpiperidine;(2f?,3f?,4S)-1-(/\/'-Benzyl-/\/"-phenylamidinoyl)-3,4,5,5-tetrahydroxy- 2-hydroxymethylpiperidine and (2f?,3f?,4S)-1-(/V',/\/"-Dibenzylamidinoyl)-3,4,5,5-tetrahydroxy- 2-hydroxymethylpiperidine;such as described in Aguilar ef al. J. Org. Chem 2008, 73, 1995- 1998 wherein two hydroxyl groups are bound to the same carbon atom of the nitrogen- containing heterocycle, preferably at a position located beta from the ring nitrogen, more preferably the hydrochloride salts of these compounds.
[17] In certain embodiments, the nitrogen-containing heterocycle in the compound is a six- membered nitrogen-containing heterocycle and more preferably is a piperidine-based structure, the compound pre
Figure imgf000006_0001
wherein X, R1 , R2, R3, R4, R5, R6 and R7 are as described herein elsewhere.
[18] Preferably, the substituents R1 and R2 are, independently, selected from H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-20 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms.
[19] In certain embodiments, the compounds of the invention do not encompass a compound wherein X=0 and R1 and R2 are both H. Thus, in a preferred embodiment of the invention, when X=0, then one of R1 and R2 is not H.
[20] In certain embodiments, the compounds of the invention do not encompass a compound wherein X=0, R1= H, and R2 is-(CH2)n-Ph-R, wherein R=H, halogen, lower alkyl, lower alkoxy and n=0-5, a ring-substituted (alkyl)phenyl. Thus, in a preferred embodiment, when X=0 and R1 =H then R2 is not -(CH2)n-Ph-R, wherein R=H, halogen, lower alkyl, lower alkoxy and n=0-5
[21] The nitrogen containing heterocycle of the present invention is a 5, 6, 7 or 8- membered (saturated) nitrogen-containing cyclic compound. The chemistry for these nitrogen containing cyclic compound is described in Stocker, B. L; Dangerfield, E. M.; Win-Mason, A. L; Haslett, G. W.; Timmer, M. S. M. Eur. J. Org. Chem. 2010, 1615-1637 and in Dragutan, I.; Dragutan, V.; Mitan, C; Vosloo, H. C. M.; Delaude, L; Demonceau, A. Beilstein J. Org.
Chem. 201 1 , 7, 699-716.
[22] It is commonplace with cyclic carbohydrate structures that they have different stereochemistries, i.e. with the hydroxyl-groups below or above the ring structure. Thus, in certain embodiments, the R3 and R4 substituted hydroxyl groups on the nitrogen-containing cyclic compound have a orientation selected from the group consisting of
Figure imgf000007_0001
[23] Furthermore, in certain embodiments, the R5 and R6 substituted hydroxyl groups on the nitrogen-containing cyclic compound may also have orientations selected from the group consisting of
Figure imgf000007_0002
[24] Of particular preference in the present invention as the nitrogen containing heterocycle
Figure imgf000007_0003
are the piperidine-based iminocyclitols such as 1-deoxymannonojiromycin, 1- deoxyaltronojiromycin, 1-deoxygalactonojirimycin and 1-deoxyallonojiromycin
Figure imgf000007_0004
[25] In certain preferred embodiments, R1 is H or a straight or branched alkyl or cycloalkyl, containing 1-20 carbon atoms, preferably H or a straight alkyl containing 1-12 carbon atoms, more preferably H, ethyl, butyl, hexyl, octyl and their structural isomers. [26] In certain preferred embodiments, R2 is H or a straight or branched alkyl or cycloalkyl, containing 1-20 carbon atoms, preferably H or a straight alkyl containing 1-12 carbon atoms, more preferably H.
[27] The hydroxyl-protecting group in the general formula of the compounds of the invention is typically a hydrolysable group that is capable of forming an ester or ether bond with the hydroxyls on the ring or the CH2OH. The protecting group can either shield the hydroxyl or serve as a prodrug which can be hydrolysed by the organism. Suitable protecting groups are for instance described in Greene's Protective Groups in Organic Synthesis, Fourth
Edition John Wiley & Sons, Inc., 2007, chapter 2.
[28] Hydroxyl protecting groups can be selected from amongst Acetyl (Ac), Benzoyl (Bz),
Benzyl (Bn), β-Methoxyethoxymethyl ether (MEM), Dimethoxytrityl, [bis-(4- methoxyphenyl)phenylmethyl] (DMT), Methoxymethyl ether (MOM), Methoxytrityl [(4- methoxyphenyl)diphenylmethyl, MMT), p-Methoxybenzyl ether (PMB), Methylthiomethyl ether, Pivaloyl (Piv), Tetrahydropyranyl (THP), Trityl (Tr), Silyl ether (most popular ones include trimethylsilyl (TMS), tert-butyldimethylsilyl (TBDMS), tri-iso-propylsilyloxymethyl
(TOM), and triisopropylsilyl (TIPS) ethers), Methyl Ethers, Ethoxyethyl ethers (EE). Preferred hydroxyl protecting group is benzyl (bn).
[29] The preferred compounds of the present invention are:
A/-1-butylurea-1-deoxynojirimycin;
(2R, 3R, 4R, 5S)-/V-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-2-(hydroxymethyl)-/V-octylpiperidine-1-carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-hydroxyethyl)-2-(hydroxymethyl)-piperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-(2-hydroxyethoxy)ethyl) 2-(hydroxymethyl)-piperidine- 1-carboximidamide;
(2R, 3R, 4R, 5S)-/V-benzyl-3,4,5-trihydroxy- 2-(hydroxymethyl)-piperidine-1-carboximidamide; (2R, 3R, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-/V-(3-phenylpropyl)piperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-/V-(3-(adamantylmethoxy)propyl)-3,4,5-trihydroxy- 2- (hydroxymethyl)piperidine-l-carboximidamide;
(2R, 3S, 4R, 5S)-/V-butyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1-carboximidamide; (2R, 3S, 4R, 5S)-/V-hexyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1-carboximidamide; (2R, 3S, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-N-octylpiperidine-1-carboximidamide; [30] The compounds of the present invention contain one or more nitrogen atoms that may be transformed into their pharmaceutically acceptable salts by contacting the compound with a suitable acid as a salt forming compound.
[31] Preferred compounds of the present invention are the hydrochloride salts of the guanidinium compounds of the present invention and in particular:
(2R, 3R, 4R, 5S)-/V-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carboximidamide hydrochloride;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-2-(hydroxymethyl)-/V-octylpiperidine-1-carboximidamide hydrochloride;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-hydroxyethyl)-2-(hydroxymethyl)-piperidine-1- carboximidamide hydrochloride;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-(2-hydroxyethoxy)ethyl) 2-(hydroxymethyl)-piperidine- 1-carboximidamide hydrochloride;
(2R, 3R, 4R, 5S)-/V-benzyl-3,4,5-trihydroxy- 2-(hydroxymethyl)-piperidine-1-carboximidamide hydrochloride;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-/V-(3-phenylpropyl)piperidine-1- carboximidamide hydrochloride;
(2R, 3R, 4R, 5S)-/V-(3-(adamantylmethoxy)propyl)-3,4,5-trihydroxy- 2- (hydroxymethyl)piperidine-l-carboximidamide hydrochloride;
(2R, 3S, 4R, 5S)-/V-butyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1-carboximidamide hydrochloride;
(2R, 3S, 4R, 5S)-/V-hexyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1-carboximidamide hydrochloride;
(2R, 3S, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-N-octylpiperidine-1-carboximidamide hydrochloride;
[32] The hydrochloride compounds of the present invention can be converted into other pharmaceutically acceptable salts using conventional procedures wherein one salt of the compound is exchanged for another salt, usually via the free base of the compound as an intermediate.
[33] Pharmaceutical salts, their preparation and properties are described in Stahl et al. 'Handbook of pharmaceutical salts, properties, selection and use", Wiley-VCH, 2008.
Pharmaceutical salts can be made using a variety of salt-forming components, usually acids such as those selected from the group consisting of 1-hydroxy-2-naphthoic acid, 2,2- dichloroacetic acid, 2-hydroxyethanesulfonic acid, 2-oxoglutaric acid, 4-acetamidobenzoic acid, 4-aminosalicylic acid, acetic acid, adipic acid, ascorbic acid (L), aspartic acid (L), benzenesulfonic acid, benzoic acid, camphoric acid (+), camphor-10-sulfonic acid (+), capric acid (decanoic acid), caproic acid (hexanoic acid), caprylic acid (octanoic acid), carbonic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfuric acid, ethane-1 ,2-disulfonic acid, ethanesulfonic acid, formic acid, fumaric acid, galactaric acid, gentisic acid, glucoheptonic acid (D), gluconic acid (D), glucuronic acid (D), glutamic acid, glutaric acid, glycerophosphoric acid, glycolic acid, hippuric acid, hydrobromic acid, hydrochloric acid, isobutyric acid, lactic acid (DL), lactobionic acid, lauric acid, maleic acid, malic acid (- L), malonic acid, mandelic acid (DL), methanesulfonic acid , naphthalene-1 ,5-disulfonic acid, naphthalene-2-sulfonic acid, nicotinic acid, nitric acid, oleic acid, oxalic acid, palmitic acid, palmoic acid, phosphoric acid, proprionic acid, pyroglutamic acid (- L), salicylic acid, sebacic acid, stearic acid, succinic acid, sulfuric acid, tartaric acid (+ L), thiocyanic acid, toluenesulfonic acid (p), undecylenic acid, preferably the hydrochloride or hydrobromide.
Chemical Definitions
[34] The term 'alkyl' refers to a straight or branched C1-C20 hydrocarbon group consisting solely of carbon and hydrogen atoms, containing no unsaturation, and which is attached to the rest of the molecule by a single bond, e.g., methyl, ethyl, n-propyl, 1-methylethyl
(isopropyl), n-butyl, i-butyl, 1 , 1-dimethylethyl (t-butyl), n-pentyl, 2-methylbutyl, 3-methylbutyl, 2,2-dimethylpropyl, 3,3 dimethylpropyl, hexyl, 2-methylpentyl, 3-methyl pentyl, 4-methylpentyl, 2,2-dimethylbutyl, 2,3-dimethylbutyl , 3,2-dimethylbutyl, 1 , 1-dimethylbutyl heptyl, octyl, nonyl, decyl, undecyl and dodecyl. The alkyls used herein are preferably C1 - C12 alkyls.
[35] The term "alkenyl" refers to a C2-C20 aliphatic hydrocarbon group containing at least one carbon-carbon double bond and which may be a straight or branched chain, e.g., ethenyl, 1-propenyl, 2-propenyl (allyl), iso-propenyl, 2-methyl- 1-propenyl, 1-butenyl, 2-butenyl.
[36] The term "alkynyl" refers to a C2-C20 aliphatic hydrocarbon group containing at least one carbon-carbon triple bond and which may be a straight or branched chain, e.g., ethynyl, 1-propynyl, 2-propynyl (propargyl).
[37] The term "cycloalkyl" denotes an unsaturated, non-aromatic mono- or multicyclic hydrocarbon ring system such as cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl. Examples of multicyclic cycloalkyl groups include perhydronapththyl, adamantyl and norbornyl groups bridged cyclic group or sprirobicyclic groups, e.g., spiro (4,4) non-2-yl.
[38] The term "cycloalkalkyl" refers to a cycloalkyl as defined above directly attached to an alkyl group as defined above, that results in the creation of a stable structure such as cyclopropylmethyl, cyclobutylethyl, cyclopentylethyl.
[39] The term "alkyl ether" or "alkoxyalkyl" refers to an alkyl group or cycloalkyl group as defined above having at least one oxygen incorporated into the alkyl chain, e.g., methyl ethyl ether, diethyl ether, tetrahydrofuran. [40] The term "aminoalkyl " refers to an alkyl group or a cycloalkyl group as defined above having at least one nitrogen atom, e.g., n-butyl amine and tetrahydrooxazine.
[41] The term "aryl" refers to aromatic radicals having in the range of about 6 to about 14 carbon atoms such as phenyl, naphthyl, tetrahydronapthyl, indanyl, biphenyl. The term "arylalkyl" refers to an aryl group as defined above directly bonded to an alkyl group as defined above, e.g., -CH2C6H5, and -C2H4C6H5. The term "alkylaryl" sometimes refers to an alkyl group as defined above directly bonded to an aryl group as defined above, e.g., - C6H4CH3, and -C6H4C2H5.
[42] The term "heterocyclic" refers to a stable 3- to 15-membered ring radical which consists of carbon atoms and from one to five heteroatoms selected from the group consisting of nitrogen, phosphorus, oxygen and sulfur. For purposes of this invention, the heterocyclic ring radical may be a monocyclic, bicyclic or tricyclic ring system, which may include fused, bridged or spiro ring systems, and the nitrogen, phosphorus, carbon, oxygen or sulfur atoms in the heterocyclic ring radical may be optionally oxidized to various oxidation states. In addition, the nitrogen atom may be optionally quaternized; and the ring radical may be partially or fully saturated (i.e., heteroaromatic or heteroaryl aromatic). Examples of such heterocyclic ring radicals include, but are not limited to, azetidinyl, acridinyl, benzodioxolyl, benzodioxanyl, benzofurnyl, carbazolyl, cinnolinyl, dioxolanyl, indolizinyl, naphthyridinyl, perhydroazepinyl, phenazinyl, phenothiazinyl, phenoxazinyl, phthalazinyl, pyridyl, pteridinyl, purinyl, quinazolinyl, quinoxalinyl, quinolinyl, isoquinolinyl, tetrazoyl, imidazolyl,
tetrahydroisouinolyl, piperidinyl, piperazinyl, 2-oxopiperazinyl, 2- oxopiperidinyl, 2- oxopyrrolidinyl, 2-oxoazepinyl, azepinyl, pyrrolyl, 4-piperidonyl, pyrrolidinyl, pyrazinyl, pyrimidinyl, pyridazinyl, oxazolyl, oxazolinyl, oxasolidinyl, triazolyl, indanyl, isoxazolyl, isoxasolidinyl, morpholinyl, thiazolyl, thiazolinyl, thiazolidinyl, isothiazolyl, quinuclidinyl, isothiazolidinyl, indolyl, isoindolyl, indolinyl, isoindolinyl, octahydroindolyl, octahydroisoindolyl, quinolyl, isoquinolyl, decahydroisoquinolyl, benzimidazolyl, thiadiazolyl, benzopyranyl, benzothiazolyl, benzooxazolyl, furyl, tetrahydrofurtyl, tetrahydropyranyl, thienyl, benzothienyl, thiamorpholinyl, thiamorpholinyl sulfoxide thiamorpholinyl sulfone, dioxaphospholanyl, oxadiazolyl, chromanyl, isochromanyl.
[43] The heterocyclic ring radical may be attached to the main structure at any heteroatom or carbon atom that results in the creation of a stable structure. The term "heteroaryl" refers to a heterocyclic ring wherein the ring is aromatic.
[44] The term "heteroarylalkyl" refers to heteroaryl ring radical as defined above directly bonded to alkyl group. The heteroarylalkyl radical may be attached to the main structure at any carbon atom from alkyl group that results in the creation of a stable structure.
[45] The term "heterocyclyl" refers to a heterocylic ring radical as defined above. The heterocyclyl ring radical may be attached to the main structure at any heteroatom or carbon atom that results in the creation of a stable structure. The term "heterocyclylalkyi" refers to a heterocylic ring radical as defined above directly bonded to alkyl group. The heterocyclylalkyi radical may be attached to the main structure at carbon atom in the alkyl group that results in the creation of a stable structure.
[46] The substituents in the 'substituted alkyl', 'substituted alkenyl' 'substituted alkynyP 'substituted cycloalkyP 'substituted cycloalkalkyl' 'substituted cyclocalkenyl' 'substituted arylalkyi, 'substituted aryl' 'substituted heterocyclic ring', 'substituted heteroaryl ring,'
'substituted heteroarylalkyi', or 'substituted heterocyclylalkyi ring', may be the same or different with one or more selected from the groups hydrogen, hydroxy, halogen, carboxyl, cyano, amino, nitro, oxo (=0), thio (=S), or optionally substituted groups selected from alkyl, alkoxy, alkenyl, alkynyl, aryl, arylalkyi, cycloalkyi, aryl, heteroaryl, heteroarylalkyi, heterocyclic ring, - COORx, -C(0)Rx, -C(S)RX, -C(0)NRxRy, -C(0)ONRxRy, -NRxCONRyRz, - N(Rx)SORy, - N(Rx)S02Ry, -(=N-N(Rx)Ry), - NR C(0)ORy, -NRxRy, -NR^OJR5'-, - NRxC(S)Ry - NRxC(S)NRyRz, -SONRxRy-, -S02NRxRy-, -ORx, -ORxC(0)NRyRz, - ORxC(0)ORy-I -OC(0)Rx, -OC(0)NRxRy, -RxNRyRz, -RxRyRz, -RXCF3, - RxNRyC(0)Rz, -RORy, -RxC(0)ORy, -
RxC(0)NRyRz, -RxC(0)Rx, -ROC(0)Ry, - SRX, -SORx, -S02RX, -ON02, wherein Rx, Ry and Rz in each of the above groups can be hydrogen atom, substituted or unsubstituted alkyl, haloalkyl, substituted or unsubstituted arylalkyi, substituted or unsubstituted aryl, substituted or unsubstituted cycloalkyi, substituted or unsubstituted cycloalkalkyl substituted or unsubstituted heterocyclic ring, substituted or unsubstituted heterocyclylalkyi, substituted or unsubstituted heteroaryl or substituted or unsubstituted heteroarylalkyi.
[47] The term "halogen" refers to radicals of fluorine, chlorine, bromine and iodine.
[48] In another aspect of the invention, a method is provided for the synthesis of the compounds having the general formula (X=0):
Figure imgf000012_0001
is a 5, 6, 7 or 8-membered (saturated) nitrogen-containing cyclic compound; wherein R1 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-20 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1is optionally substituted with one or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2;
wherein R2 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-12 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1is optionally substituted with one or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2;
wherein R3, R4, R5, R6 are independently H or a hydroxyl protecting group,
wherein R7 is H, C1-C6 alkyl;
[49] The method starts with the preparation of the suitably protected iminosugar using conventional technologies (Wennekes, T.; Lang, B.; Leeman, M.; van der Marel, G.A.; Smits, E.; Weber, M.; van Wiltenburg, J.; Wolberg, M.; Aerts, J.M.F.G.; Overkleeft, H.S. J. Org. Chem. 2007, 72, 1088-1097. The preferred protecting group is benzyl.
[50] The urea derivatives of the present invention are synthesised from the protected iminosugar having the general formula
Figure imgf000013_0001
with an isocyanate carrying the desired R-group (R-NCO). Hydrogenolysis of the intermediate provides the urea derivative (Riegel's Handbook of Industrial Chemistry, 2003, page 740). An exemplary reaction for a 1-DNJ derivative is shown below.
Figure imgf000013_0002
[51] In another aspect of the invention, a method is provided for the synthesis of the compounds having the general formula wherein
Figure imgf000014_0001
is a 5, 6, 7 or 8-membered (saturated) nitrogen-containing cyclic compound;
wherein R1 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-20 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1is optionally substituted with one or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2;
wherein R2 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-12 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1is optionally substituted with one or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2;
wherein R3, R4, R5, R6 are independently H or a hydroxyl protecting group,
wherein R7 is H, C1-C6 alkyl.
[52] A thiourea intermediate is prepared from a substituted amine (R1 R2NH), preferably a substituted primary amine R1 NH2 and Cbz-NCS. Cbz-NCS is prepared according to Martin, N.I. et al. (2006) Organic Letters, 8, 4035-4036. Alternative reagents are Fmoc-NCS and Pbf- NCS.
Figure imgf000015_0001
[53] The thiourea intermediate is reacted in the presence of an activating agent with the protected iminosugars leading to a protected guanidinium compound which can subsequently be hydrogenolysed, for instance using hydrogen with Pd/C in the presence of trace amount of HCI to provide the hydrochloride salt of the guanidinium derivative of the iminosugar. The hydrochloride salt of the guanidinium derivative of the iminosugar can be converted to yield other amine salts using conventional techniques such as described in Stahl et al. 'Handbook of pharmaceutical salts, properties, selection and use", Wiley-VCH, 2008.
[54] The strategy can be exemplified by the synthesis of the n-butyl derivative (R1 is n- butyl)
Figure imgf000015_0002
[55] The protons on the guanidium nitrogens can be, independently further derivatized, for instance alkylated, using conventional technology.
[56] The invention further relates to a method for modifying (increasing, reducing) glycosidase activity by contacting the glycosidase with an effective amount of one of the compounds of the invention. The glycosidase can be any glycosidase but is preferably selected from the group consisting of alpha-galactosidase, beta-galactosidase, alpha- glucosidase, beta glucosidase, alpha-mannosidase, beta-mannosidase, naringinase, sialidase, and neuraminidase. In certain embodiments, the glycosidase is a purified or recombinant functional glycosidase enzyme. The contacting of the glycosidase can be in vitro or in vivo , depending on the circumstances.
[57] The compounds of the invention display activity, preferably an inhibiting activity against various glycosidases. Having an inhibiting activity of a compound vis-a-vis an enzyme is usually expressed as the IC50 value. To compare compounds the IC50 values can be taken relatively. The relative inhibiting activity of compounds towards a certain enzyme can then be expressed in %. The compounds of the present preferably express an inhibitory activity that is significantly higher than currently known compounds towards specific glycosidase enzymes, preferably at least 5, 10, 15, 20, 25 or 50 % higher than currently known compounds such as DNJ at given concentration. [58] The invention further relates to a method for the treatment of glycosidase-activity related ailments of which non-limiting examples are Pompe's disease, a glycolipid storage disease such as Gaucher's disease, Tay Sachs disease, Sandhoff disease, Fabry disease, GM1 gangliodosis, and fucosidosis, lysosomal storage disorders, diabetes, viral infections, HIV, Human hepatitis C (HCV), dengue virus, tuberculosis, Niemann-Pick diseases and cancer comprising administering to an individual in need thereof an effective amount of a compound according to the invention and to a pharmaceutical composition comprising a compound according to the invention and a pharmaceutically acceptable carrier.
Examples
Reagents, solvents and solutions.
[59] Unless stated otherwise, chemicals were obtained from commercial sources and used without further purification. All solvents were purchased from Biosolve (Valkenswaard, The Netherlands) and were stored on molecular sieves (4A). 2,3,4,6-tetra-O-benzyl-D- glucopyranose was obtained from Carbosynth Limited (MT06691). 2,3,4,6-tetra-0-benzyl-1- deoxynojirimycin (6) (Wennekes, T.; Lang, B.; Leeman, M.; van der Marel, G.A.; Smits, E.; Weber, M.; van Wltenburg, J.; Wolberg, M.; Aerts, J.M.F.G.; Overkleeft, H.S. J. Org. Chem. 2007, 72, 1088-1097) and Cbz-NCS (Martin, N. I.; Liskamp, R.M.J. Org. Lett. 2006, 18, 4035- 4038) were prepared as previously described. Removal of solvent was performed under reduced pressure using a rotary evaporator. Purification Techniques.
[60] All reactions and fractions from column chromatography were monitored by thin layer chromatography (TLC) using plates with a UV fluorescent indicator (normal Si02, Merck 60 F254). One or more of the following methods were used for visualization: 10% H2S04 in MeOH or ninhydrine.
Instrumentation for Compound Characterization.
[61] 1 H NMR spectra were recorded at 300 MHz with chemical shifts reported in parts per million (ppm) downfield relative to tetramethylsilane (Me4Si) or H20 (δ 4.8). 1 H NMR data are reported in the following order: number of protons, multiplicity (s, singlet; d, doublet; t, triplet; q, quartet and m, multiplet) and coupling constant (J) in Hertz (Hz). When appropriate, the multiplicity is preceded by br, indicating that the signal was broad. 13C NMR spectra were recorded at 75.5 MHz with chemical shifts reported relative to CDCI3 δ 77.0. 13C NMR spectra were recorded using the attached proton test (APT) sequence. All literature compounds had 1 H NMR, and mass spectra consistent with the assigned structures.
Experimental Procedures and Data for Compounds
V-Hexyl-2,3,4,6-tetra-0-benzyl-1 -deoxynojirimycin (7):
[62] To a solution of benzyl-protected 1-DNJ (6) (500 mg, 0.95 mmol) in DMF (5 ml_) was added K2C03 (400 mg, 2.86 mmol, 3 eq.) and 1-bromohexane (200 μΙ_, 1.43 mmol, 1.5 eq.). The resulting reaction mixture was refluxed overnight at 85 °C. The reaction mixture was warmed up to rt, filtered, concentrated in vacuo and the product was isolated via flash chromatography (Si02, 1 :5 EtOAc/hexane) to yield 7 (363 mg, 62%) of a colorless oil. δΗ (300 MHz; CDCI3; Me4Si) 0.87 (3 H, t, CH3, J = 6.74 Hz), 1.1 1 - 1.40 (8 H, m, CH2), 2.19 - 2.31 (2 H, m, CH2NH), 2.51 - 2.68 (2 H, m), 3.09 (1 H, m), 3.43 - 3.70 (5 H, m), 4.41 - 4.98 (8 H, m, CH2Car0m), 7.12 - 7.34 (20 H, m, CHarom). 5C (75.5 MHz; CDCI3; Me4Si) 14.0 (CH3), 22.5, 23.4, 27.1 , 31.6 (CH2), 52.3, 54.4 (CH2NH), 72.6, 73.3, 75.1 , 75.2 (CH2), 63.6, 78.5, 87.3 (C-2, C-3, C-4, C-5), 127.3, 127.4, 127.5, 127.7, 128.2 (CHarom), 137.7, 138.5, 139.0 (Cq). Rf = 0.38 (EtOAc/hexane 1 :5). HRMS Calcd for C40H49NO4 [M+H]+ 608.3740, found 608.3729.
/V-Hexyl-1 -deoxynojirimycin (8).
[63] A suspension of 7 (100 mg, 0.164 mmol) and Pd/C (10%) (100 mg) in EtOH (5 ml_) was adjusted to pH = 1 with aqueous HCI (1 M). The reaction mixture was stirred vigorously under a H2 (g) atmosphere for 18 h at rt. The reaction mixture was next filtered over celite, washed with EtOH and concentrated to dryness. 8 was obtained after lyophilization as the HCI-salt (47 mg, quant.). 5C (75.5 MHz; D20) 13.4 (CH3), 22.0, 22.6, 25.8, 30.7 (CH2), 52.9, 53.7, 55.0, 65.3, 67.0, 68.1 , 76.7 (CH2NH), C-2, C-3, C-4, C-5, C-6). HRMS for C12H25NO4 [M+H]+ 248.1862, found 248.1857.
Λ -butylurea-2,3,4,6-tetra-0-benzyl-1 -deoxynojirimycin (9):
[64] To a solution of benzyl-protected 1-DNJ (6) (200 mg, 0.38 mmol, 1 eq.) in
dimethoxyethane (3 mL) was added n-butyl isocyanate (86 μΙ_, 0.76 mmol, 2 eq.). The resulting reaction mixture was refluxed overnight at 90 °C. The reaction mixture was warmed up to rt, concentrated in vacuo and the product was isolated via flash chromatography (Si02, 2:5 EtOAc/hexane) to yield 9 (168 mg, 70%) as a colorless oil. δΗ (300 MHz; CDCI3; Me4Si) 0.82 (3 H, t, CH3, J = 7.01 Hz), 1.17 - 1.30 (4 H, m, CH2), 3.06 - 3.14 (2 H, m, CH2NH), 3.29 (1 H, dd, JA = 3.71 Hz, JB = 10.18 Hz), 3.53 - 3.76 (5 H, m), 3.92 (1 H, dd, JA = 4.68 Hz, JB = 9.35 Hz), 3.99 - 4.05 (1 H, m), 4.44 (2 H, d, CH2Carom, J = 2.75 Hz), 4.47 (1 H, s, CH2Carom), 4.52 (1 H, d, J = 2.75 Hz), 4.56 (1 H, s, CH2Carom), 4.62 (1 H, s, CH2Carom), 4.70 and 4.74 (2 x 1 H, 2 x d, CH2Carom), 5.47 (1 H, t, J = 5.23 Hz), 7.20 - 7.36 (20H, m, CHarom). 5C (75.5 MHz; CDCI3; Me4Si) 13.7 (CH3), 19.9, 31.8 (CH2), 40.5, 40.6 (CH2NH), 70.8, 71.0, 72.8, 73.3 (CH2), 56.9, 75.8, 78.8, 82.1 (C-2, C-3, C-4, C-5), 127.6, 127.7, 127.9, 128.2 (CHarom), 137.4, 137.8, 137.9, 138.0 (Cq), 159.2 (NHC(O)). Rf = 0.40 (EtOAc/hexane 2: 1). HRMS Calcd for
C39H46N205 [M+H]+ 623.3485, found 623.3471. Λ -butylurea-l -deoxynojirimycin (10)
[65] A suspension of 9 (168 mg, 0.27 mmol) and Pd/C (10%) (168 mg) in EtOH (5 mL) was adjusted to pH = 1 with aqueous HCI (2M). The reaction mixture was stirred vigorously under a H2 (g) atmosphere for 18 h at rt. The reaction mixture was next filtered over celite, washed with EtOH and concentrated in vacuo. 10 was obtained after lyophilization. (82 mg, quant.). δΗ (300 MHz; D20) 0.89 (3 H, t, CH3), 1.35 (2 H, m, CH2), 1.48 (2 H, m, CH2), 3.14 - 3.21 (2 H, m, CH2NH), 3.41 (1 H, d, J = 12.1 Hz), 3.61 (1 H, br s), 3.72 - 3.86 (6 H, m). 5C (75.5 MHz; D20) 13.3 (CH3), 19.6, 31.6 (CH2), 40.4, 44.2 (CH2NH), 60.0, 68.7, 71.1 , 74.0 (C-2, C-3, C-4, C-5, C-6), 160.5 (NHC(O)). HRMS Calcd for Cn H22N205 [M+H]+, 263.1607, 263.1583. Synthesis of the protected compounds, general procedure
R.NH
Figure imgf000018_0001
[66] An excess of the amine (1.25 mmol) was dissolved in DCM (6 mL) and CbzNCS (1.0 mmol, 2 mL, 0.5M in DCM) was added. The resulting mixture was stirred for 0.5 h at r.t. The mixture was then washed with 0.2 M HCI (6 mL) to remove the excess of amine. The organic layer was dried over Na2S04, filtered and concentrated in vacuo. The residue was dissolved in DCM (6 mL) and EDCI (1.0 mmol, 192 mg), benzyl protected 1-DNJ 6 (0.5 mmol, 250 mg) and Et3N (1.0 mmol, 140 μί) were added. The mixture was stirred overnight at r.t. The product was obtained after a silica gel column chromatography with appropriate
hexanes/EtOAc mixtures.
[67] Using the above procedure, the following compounds were prepared, analysed and their structure confirmed:
A/-(benzyloxycarbonyl)-/\/'-(n-butyl) 2,3,4,6-tetra-O-benzyl-deoxynojirimycin (12);
Benzyl ((octylamino)((2f?,3f?,4f?,5S)-3,4,5-tris(benzyloxy)-2-((benzyloxy)methyl)piperidin-1- yl)methylene)carbamate (14);
Benzyl (((2-(2-(benzyloxy)ethoxy)ethyl)amino)((2 ,3 ,4 ,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1-yl)methylene)carbamate (16);
Benzyl (((2-(benzyloxy)ethyl)amino)((2 ,3 ,4 ,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1-yl)methylene)carbamate (18);
Benzyl (((3-phenylpropyl)amino)((2R,3R,4R,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1-yl)methylene)carbamate (20);
Benzyl ((benzylamino)((2f?,3f?,4f?,5S)-3,4,5-tris(benzyloxy)-2-((benzyloxy)methyl)piperidin-1- yl)methylene)carbamate (22);
Benzyl (((3-((1 ,2S,5S)-adamantan-2-ylmethoxy)propyl)amino)((2 ,3 ,4 ,5S)-3,4,5- tris(benzyloxy)-2-((benzyloxy)methyl)piperidin-1-yl)methylene)carbamate (24).
Deprotection, general procedure
[68] A suspension of the protected compound (0.1 mmol) and Pd/C (10%) (75 mg) in EtOH (5 mL) was adjusted to pH = 1 with aqueous HCI (1 M). The reaction mixture was stirred vigorously under a H2 (g) atmosphere for 18 h at r.t. The reaction mixture was filtered over celite, washed with EtOH and concentrated in vacuo. After lyophilization the HCI-salts were obtained.
[69] Using the above procedure, the following compounds were prepared, analysed and their structure confirmed:
A/-1-butylguanidine-1-deoxynojirimycin hydrochloride (13);
((2R, 3R, 4R, 5S)-3,4,5-trihydroxy-2-(hydroxymethyl)-/V-octylpiperidine-1-carboximidamide hydrochloride (15);
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-(2-hydroxyethoxy)ethyl)-2-(hydroxymethyl)-piperidine- 1-carboximidamide hydrochloride (17) ;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-hydroxyethyl)-2-(hydroxymethyl)-piperidine-1- carboximidamide hydrochloride (19) ; {2R, 3R, AR, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-/V-(3-phenylpropyl)piperidine-1- carboximidamide hydrochloride (21);
(2R, 3R, AR, 5S)-/V-benzyl-3,4,5-trihydroxy- 2-(hydroxymethyl)-piperidine-1-carboximidamide hydrochloride (23) ;
(2R, 3R, AR, 5S)-/V-(3-(adamantylmethoxy)propyl)-3,4,5-trihydroxy- 2- (hydroxymethyl)piperidine-l-carboximidamide hydrochloride (25) .
/V-(benzyloxycarbonyl) /V'-(n-butyl) thiourea (11 ).
[70] A solution of n-butylamine (309 μΙ_, 3.12 mmol) in CH2CI2 (10 mL) was treated with a solution of Cbz-NCS (5 mL, 0.5M in CH2CI2). The resulting reaction mixture was stirred for 30 min at rt. The reaction mixture was concentrated in vacuo and the product was isolated via flash chromatography (Si02, EtOAc/hexane 1 :6) to yield 11 (456 mg, 68%) as a white powder. δΗ (300 MHz; CDCI3; Me4Si) 0.93 (3 H, t, CH3), 1.26 - 1.41 (2 H, m, CH2), 1.44 - 1.66 (2 H, m, CH2), 3.62 (2 H, q, NHCH2), 5.13 (2 H, s, CH2Carom), 7.26 - 7.40 (5 H, m,
CHarom), 8.80 (1 H, br s, NH), 9.66 (1 H, br s, NH). 5C (75.5 MHz; CDCI3; Me4Si) 13.5 (CH3), 19.8, 30.0 (CH2), 45.1 (NHCH2), 67.6 (CH2Car0m), 127.5, 127.8, 128.1 , 128.4, 128.7, 128.8 (CHarom), 134.4 (Cq), 152.5 (NHC(S)NH), 178.7 (NHC(O)). Rf = 0.55 (EtOAc/hexane 1 :5). HRMS Calcd for Ci3H18N202S [M+H]+, 267.1167, found 267.1155. /V-(benzyloxycarbonyl) /V'-(n-butyl) 2,3,4,6-tetra-O-benzyl-deoxynojirimycin (12).
[71] Thiourea 11 (305 mg, 1.14 mmol, 2 eq.) in CH2CI2 (10 mL) was treated with benzyl protected 1-DNJ (6) (300 mg, 0.57 mmol, 1 eq.), EDCI (220 mg, 1.14 mmol, 2 eq.) and Et3N (160 μί, 1.14 mmol, 2 eq.). The resulting reaction mixture was stirred for 18 h at rt. The reaction mixture was concentrated in vacuo and the product was isolated via flash
chromatography (Si02, EtOAc/hexane 1 :3 -^ 1 :2 -^ 1 :1 -» 2:1) to yield 12 (270 mg, 64%) as a colorless oil. δΗ (300 MHz; CDCI3; Me4Si) 0.77 (3 H, t, CH3, J = 7.15 Hz), 1.08 - 1.32 (4 H, m, CH2), 2.93 - 3.04 and 3.06 - 3.14 (2 x 1 H, 2 x m, CH2NH), 3.43 (1 H, dd, JA = 3.2 Hz, JB = 10.4 Hz), 3.59 - 3.79 (6 H, m), 3.98 - 4.03 (1 H, m), 4.40 (2 H, s, CH2Carom), 4.47 and 4.51 (2 x 1 H, 2 x d, CH2Carom, J = 6.85 Hz), 4.61 (2 H, s, CH2Carom), 4.64 and 4.68 (2 x 1 H, 2 x d, CH2Carom), 5.09 and 5.16 (2 x 1 H, 2 x d, CH2Carom, J = 12.65 Hz), 7.20 - 7.42 (25H, m,
CHarom). 5c (75.5 MHz; CDCI3; Me4Si) 13.5 (CH3), 19.7, 31.5 (CH2), 43.5, 44.3 (CH2NH), 66.4, 69.7, 71.1 , 72.6, 72.9, 73.2 (CH2), 58.5, 75.2, 77.6, 80.4 (C-2, C-3, C-4, C-5), 127.2, 127.6, 127.8, 128.0, 128.3 (CHarom), 137.4, 137.7, 137.9 (Cq), 160.8 (NHC(O)), 162.9 (NHC(N). Rf = 0.59 (EtOAc/hexane 1 :1). HRMS Calcd for C47H53N306 [M+H]+, 756.4013, found 756.3996. Λ -butylguanidine-l -deoxynojirimycin hydrochloride (13):
[72] A suspension of 12 (75 mg, 0.1 mmol) and Pd/C (10%) (75 mg) in EtOH (5 ml_) was adjusted to pH = 1 with aqueous HCI (1 M). The reaction mixture was stirred vigorously under a H2 (g) atmosphere for 18 h at rt. The reaction mixture was next filtered over celite, washed with EtOH and concentrated in vacuo. 13 was obtained after lyophilization as the HCI-salt (30 mg, quant.) δΗ (300 MHz; D20) 0.93 (3 H, t, CH3, J = 7.1 Hz), 1.35 - 1.43 (2 H, m, CH2), 1.60 - 1.64 (2 H, m, CH2), 3.28 - 3.33 (2 H, m, NCH2), 3.60 and 3.68 (2 x 2 H, 2 x s), 3.85 - 3.99 (4 H, m). 5c (75.5 MHz; D20) 12.7 (CH3), 30.0, 42.0, 45.2 (CH2), 59.2 (CH2), 63.7, 68.0, 70.4, 72.9 (C-2, C-3, C-4, C-5). HRMS Calcd for CiiH23N304 [M+H]+, 262.1767, found 262.1771.
Benzyl ((octylamino)((2 ?,3 ?,4 ?,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1 -yl)methylene)carbamate (14)
Figure imgf000021_0001
[73] H NMR (300 MHz, CDCI3) δ 7.45 - 7.23 (m, 25H), 5.15 (q, 2H), 4.70 - 4.63 (m, 4H), 4.52 (dd, 2H), 4.43 (s, 2H), 4.05 (q, 1 H), 3.81 - 3.62 (m, 7H), 3.44 (dd, 1 H), 3.17 - 2.97 (m, 2H), 1 .28 - 1 .17 (m, 14H), 0.90 (t, 3H). 3C NMR (75 MHz, CDCI3) δ 163.3, 161 .2, 138.3, 138.2, 138.1 , 137.8, 128.7, 128.4, 128.2, 127.6, 81 .0, 78.1 , 75.7, 73.7, 73.4, 73.0, 71 .6, 70.1 , 66.8, 59.0, 44.7, 44.3, 32.0, 29.9, 29.4, 29.4, 27.0, 22.9, 14.4. HRMS: calcd. for C5iH61N306: 812,4633, found 812,4637.
((2R, 3R, 4R, 5S)-3,4,5-trihydroxy-2-(hydroxymethyl)- V-octylpiperidine-1 - carboximidamide hydrochloride (15)
Benzyl (((2-(2-(benzyloxy)ethoxy)ethyl)amino)((2 ?,3 ?,4 ?,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1 -yl)methylene)carbamate(16)
Figure imgf000021_0002
[74] H NMR (300 MHz, CDCI3) δ 7.43 - 7.18 (m, 30H), 5.14 (q, 2H), 4.62 (t, 4H), 4.50 - 4.47 (m, 4H), 4.41 (s, 2H), 4.1 1 - 4.06 (m, 1 H), 3.78 - 3.71 (m, 4H), 3.66 - 3.59 (m, 3H), 3.55 - 3.23 (m, 10H). 3C NMR (75 MHz, CDCI3) δ 162.9, 160.7, 138.4, 138.3, 138.2, 138.0, 128.6, 128.5, 128.2, 128.0, 80.9, 78.0, 75.4, 73.5, 73.4, 73.3, 72.9, 71 .5, 70.4, 69.8, 69.7, 69.6, 66.9, 58.8, 44.6, 43.6. HRMS: calcd. for C54H59N308: 878,4375, found 878,4413. [2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-(2-hydroxyethoxy)ethyl)-2-(hydroxymethyl)- piperidine-1 - carboximidamide hydrochloride (17) )
Benzyl (((2-(benzyloxy)ethyl)amino)((2 ?,3 ?,4 ?,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1 -yl)methylene)carbamate (18) )
Figure imgf000022_0001
[75] H NMR (300 MHz, CDCI3) δ 7.38 - 7.14 (m, 30H), 5.13 (q, 2H), 4.63 - 4.56 (m, 4H), 4.45 (dd, 2H), 4.36 (d, 4H), 4.05 (q, 1 H), 3.78 - 3.56 (m, 6H), 3.44 - 3.28 (m, 5H). 3C NMR (75 MHz, CDCI3) δ 162.9, 160.8, 138.3, 138.1 , 138.1 , 137.9, 128.6, 128.4, 128.2, 128.1 , 128.0, 80.9, 76.9, 75.5, 73.5, 73.3, 73.0, 72.9, 71 .5, 69.8, 68.8, 66.9, 58.9, 44.5, 43.7. HRMS: calcd. for CszHssNsOy: 834,41 13, found 834,4135.
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-hydroxyethyl)-2-(hydroxymethyl)-piperidine-1 - carboximidamide hydrochloride (19)
Benzyl (((3-phenylpropyl)amino)((2 ?,3 ?,4 ?,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1 -yl)methylene)carbamate (20) )
Figure imgf000022_0002
[76] H NMR (300 MHz, CDCI3) δ 7.55 - 7.08 (m, 30H), 5.18 (q, 2H), 4.59 (q, 4H), 4.47 (d, 2H), 4.43 (d, 2H), 4.34 (d, 2H), 4.28 - 4.25 (m, 2H), 4.05 (q, 1 H), 3.77 - 3.59 (m, 6H), 3.45 (dd, 1 H). 3C
NMR (75 MHz, CDCI3) δ 162.7, 160.8, 137.9, 137.7, 137.5, 129.0, 128.3, 127.7, 80.1 , 75.0, 73.2, 73.0, 72.5, 71 .2, 69.5, 66.7, 58.7, 47.8, 44.4. HRMS: calcd. for C5oH5i N306: 790,3851 , found 790,3839.
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-A/-(3-phenylpropyl)piperidine-1 - carboximidamide hydrochloride (21) )
Benzyl ((benzylamino)((2 ?,3 ?,4 ?,5S)-3,4,5-tris(benzyloxy)-2- ((benzyloxy)methyl)piperidin-1 -yl)methylene)carbamate (22)
Figure imgf000023_0001
[77] H NMR (300 MHz, CDCI3) δ 7.45 - 7.01 (m, 30H), 5.12 (q, 2H), 4.63 (q, 4H), 4.48 (dd, 2H), 4.39 (s, 2H), 4.02 (q, 1H), 3.78-3.60 (m, 8H), 3.42 (dd, 1H), 3.17-2.99 (m, 2H), 2.43 (t, 2H), 1.82 (m, 2H), 1.57 (m, 2H). 3C NMR (75 MHz, CDCI3) δ 163.4, 161.3, 141.6, 138.3, 138.2, 138.1, 137.8, 128.7, 128.5, 128.2, 128.2, 128.0, 127.7, 126.2, 80.6, 78.0, 77.8, 77.4, 77.0, 75.6, 73.7, 73.3, 73.0, 71.6, 70.1, 68.2, 66.9, 59.0, 44.7, 43.8, 33.3, 31.7, 25.9. HRMS: calcd. for C52H55N306: 818,4164, found 818,4155.
(2R, 3R, 4R, 5S)-/V-benzyl-3,4,5-trihydroxy- 2-(hydroxymethyl)-piperidine-1- carboximidamide hydrochloride (23)
Benzyl (((3-((1 ?,2S,5S)-adamantan-2-ylmethoxy)propyl)amino)((2?,3?,4?,5S)-3,4,5- tris(benzyloxy)-2-((benzyloxy)methyl)piperidin-1-yl)methylene)carbamate (24)
Figure imgf000023_0002
[78] H NMR (300 MHz, CDCI3) δ 7.44 - 7.18 (m, 25H), 5.14 - 5.09 (q, 2H), 4.65 (t, 4H), 4.51 (dd, 2H), 4.41 (s, 2H), 4.06 (q, 1H), 3.80-3.62 (m, 6H), 3.48-3.41 (m, 1H), 3.30-3.15 (m, 4H), 2.87 (s, 2H), 1.93 (s,3H), 1.72 - 1.53 (m, 10H), 1.49 (d,6H). 3C NMR (75 MHz, CDCI3) δ 163.0, 161.0, 138.3, 138.2, 138.2, 138.0, 128.6, 128.1, 82.4, 81.3, 78.2, 75.6, 73.6, 73.4, 73.1, 71.5, 69.8, 69.6, 66.9, 58.8, 44.9, 41.9, 39.9, 37.4, 34.3, 29.9, 28.5. HRMS: calcd. for C57H67N307: 906,5052, found 906,5039. (2R, 3R, 4R, 5S)-V-(3-(adamantylmethoxy)propyl)-3,4,5-trihydroxy- 2- (hydroxymethyl)piperidine-l- carboximidamide hydrochloride (25)
Novel guanidinium derivatives of 1-deoxynojirimycin were prepared using a concise synthetic protocol and will be tested against a panel of glycosidases for their inhibitory properties.
Exploring the side chain variations will enlighten how the length of the alkyl group attached to the guandinium moiety impacts the potency of these inhibitors when evaluated against a panel of glycosidase enzymes. Furthermore, gluco-and galacto- iminosugars were chosen to compare inhibitory differences due to stereochemistry properties.
Figure imgf000024_0001
S
Figure imgf000024_0002
Procedure rid Results: tikicose Unit
Figure imgf000024_0004
n compound butyl" i 7
hexyl- 3
tjciy!" S 9 Scheme 1. Overview scheme for synthesis of 7, 8 and 9: a) CbzNCS, DCM, RT, 15min; b) EDCI, Et3N, DCM, RT, over night; c) H2, Pd/C (10%), MeOH:AcOH = 1 :1. The synthesis of the guanidinium analogues x-x started with the preparation of thioureas 1-3 from n-alkyl amine and Cbz-NCS. Reaction with benzyl chloroform ate, dry potassium thiocyanate in DCM and in presence of phase-transfer agent gave 1-3 in 86-92 % yield.
Figure imgf000025_0001
Scheme 2. Synthesis of thiourea analogues 1 , 2 and 3: a) Tetrachloroethylene (C2CI4), 18- crown-6 (5%), reflux, over night reaction; b) CbzNCS, DCM, RT, 15min.After reacting with EDCI, NEt3, and commercially available DNJ, the benzylated guanidinium compounds 4-6 were obtained.
Figure imgf000025_0002
butyi- 1 85 4
3 SI S
octyl- 5 84 &
Scheme 3. Thioureas 1 (n=1), 2 (n=3) and 3 (n=5) coupled with 1-deoxynojirimycin. a) EDCI, NEt3, DCM; room temperature, over night reaction. Afterwards, the featured benzyl groups of 4, 5 and 6 were deprotected with hydrogenation using palladium on activated charcoal (10%) in a 1 : 1 mixture of methanol and acetic acid. Various deprotection approaches were tried, however presence of acetic acid was preferred in this case
Figure imgf000026_0001
butyl- i 45 ?
3 S2 8
S3 9
Scheme 4. Deprotection of gluco-derivatives 4 (n=1), 5 (n=3) and 6 (n=5) with palladium on activated charcoal (10%); room temperature, 3 h reaction. Final products 7-9 were obtained after purification by prep-HPLC in relatively good yields.
Galactose Unit
Same approach was used to prepare galacto- compounds 10, 1 1 and 12.
Figure imgf000026_0002
10: (2R, 3S, AR, 5S)-/V-butyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1 - carboximidamide;
1 1 : (2R, 3S, AR, 5S)-/V-hexyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1 - carboximidamide;
12: (2R, 3S, 4ft, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-N-octylpiperidine-1 - carboximidamide; Scheme 5. Galacto- inhibitors 10-12 to investigate and evaluate stereochemistry Properties. Analytical data
N-(Benzyloxycarbonyl)-N'-(butyl) thiourea s
H H
dH (300 MHz; CDCI3; Me4Si) 0.93 (t, CH3, 3H), 1.26-1.41 (m, CH2, 2H), 1.44-1.66 (m, CH2, 2H), 3.62 (q, NHCH2, 2H), 5.13 (s, CH2Carom, 2H), 7.26-7.40 (m, CHarom, 5H), 8.80(brs,NH, 1 H), 9.66(brs,NH, 1 H). dC (75.5 MHz; CDCI3; Me4Si) 13.5 (CH3),
19.8, 30.0 (CH2), 45.1 (NHCH2), 67.6 (CH2Carom), 127.5, 127.8, 128.1 , 128.4, 128.7, 128.8 (CHarom), 134.4 (Cq), 152.5 (NHC(S)NH), 178.7 (NHC(O)). HRMS calcd for C13H18N202S [M + H]+, 267.1167, found 267.1 155.
N-(Benzyloxycarbonyl)-N'-(hexyl) th
S
N v - H H dH (300 MHz; CDCI3; Me4Si) 0.895 (t, CH3, 3H), 1.20-1.41 (m, 3xCH2, 6H), 1.60- 1.79 (m, CH2, 2H), 3.62 (q, NHCH2, 2H), 5.17 (s, CH2Carom, 2H), 7.26-7.40 (m, CHarom, 5H), 7.97 (brs.NH, 1 H), 9.60 (brs, NH, 1 H).
N-(Benzyloxycarbonyl)-N'-(octyl) thiourea
N A
H
dH (300 MHz; CDCI3; Me4Si) 0.88 (t, CH3, 3H), 1.23-1.41 (m, 6xCH2, 12H), 1.56-1.70 (m, CH2, 2H), 3.62 (q, NHCH2, 2H), 5.18 (s, CH2Carom, 2H), 7.33-7.38 (m, CHarom, 5H), 7.96 (brs, NH, 1 H), 9.60 (brs, NH, 1 H).
N-(Benzyloxycarbonyl)-N'-(butyl) 2,3,4,6-tetra-O-benzyl-deoxynojirimycin
Figure imgf000028_0001
dH (300 MHz; CDCI3; Me4Si) 0.77 (t, CH3, J = 7.15 Hz, 3H), 1.08-1.32 (m, CH2, 4H), 2.93-3.04 and 3.06-3.14 (2xm, CH2NH, 2x1 H), 3.43(dd, JA=3.2Hz, JB=10.4Hz, 1 H), 3.59-3.79 (m, 6H), 3.98-4.03 (m, 1 H), 4.40 (s, CH2Carom, 2H), 4.47 and 4.51 (2=d,
CH2Carom, J=6.85 Hz, 2x1 H), 4.61 (s, CH2Carom, 2H), 4.64 and 4.68 (2xd, CH2Carom, 2=1 H), 5.09 and 5.16 (2=d, CH2Carom, J=12.65 Hz, 2x1 H), 7.20-7.42 (m, CHarom, 25H). dC (75.5 MHz; CDCI3; Me4Si) 13.5 (CH3), 19.7, 31.5 (CH2), 43.5, 44.3 (CH2NH),
66.4, 69.7, 71.1 , 72.6, 72.9, 73.2 (CH2), 58.5, 75.2, 77.6, 80.4 (C-2, C-3, C-4, C-5),
127.2, 127.6, 127.8, 128.0, 128.3 (CHarom), 137.4, 137.7, 137.9 (Cq), 160.8 (NHC(O)), 162.9 (NHC(N)). HRMS calcd for C47H53N306 [M + H]+, 756.4013, found 756.3996.
The compound is deprotected using the herein described method and tested in an enzymatic assay as described herein elsewhere. The activity of the compound against various galactosidases is noted.
N-(Benzyloxycarbonyl)-N' -(hexyl) 2,3,4,6-tetra-O-benzyl-deoxynojirimycin
Figure imgf000028_0002
dH (300 MHz; CDCI3; Me4Si) 0.84 (t, CH3, J=9.0 Hz, 3H), 1.10-1.28 (m, CH2, 8H), 2.92-3.10 (m, CH2NH, 2H), 3.43 (dd, JA=3.0Hz, JB=12.0Hz, 1 H), 3.62-3.78 (m, 6H), 3.98^1.03 (m, 1 H), 4.40 (s, CH2Carom, 2H), 4.46-4.52 (2xd, CH2Carom, J=6.76 Hz, 2x1 H), 4.61 (s, CH2Carom, 2H), 4.62-4.67 (2xd, CH2Carom, 2x1 H), 5.07-5.18 (2xd, CH2Carom, J=12 Hz, 2x1 H), 7.18-7.44 (m, CHarom, 25H) The compound is deprotected using the herein described method and tested in an enzymatic assay as described herein elsewhere. The activity of the compound against various galactosidases is noted.
N-(Benzyloxycarbonyl)-N' -(octyl) 2,3,4,6-tetra-O-benzyl-deoxynojirimycin
Figure imgf000029_0001
dH (300 MHz; CDCI3; Me4Si) 0.85 (t, CH3, J=6.0 Hz, 3H), 1.13-1.28 (m, CH2, 12H), 2.92-3.12 (m, CH2NH, 2H), 3.45 (dd, JA=3.0Hz, JB=12.0Hz, 1 H), 3.61-3.76 (m, 6H), 3.98^1.01 (m, 1 H), 4.40 (s, CH2Carom, 2H), 4.46-4.52 (2xd, CH2Carom, J=6.76 Hz, 2x1 H), 4.60 (s, CH2Carom, 2H), 4.61-4.68 (2xd, CH2Carom, 2x1 H), 5.07-5.18 (2xd, CH2Carom, J=12 Hz, 2x1 H), 7.20-7.42 (m, CHarom, 25H).
The compound is deprotected using the herein described method and tested in an enzymatic assay as described herein elsewhere. The activity of the compound against various galactosidases is noted.
Benzyl-(Z)-(butylamino)((2R,3S,4R,5S)-3,4,5-tris(benzyloxy)-2-((benzyloxy)- methyl)piperidin-1 -yl)methylene)carbamate
Figure imgf000029_0002
dH (300 MHz; CDCI3; Me4Si) 0.77-0.82 (t, CH3, J=6.0 Hz, 3H), 1.1 1-1.35 (m, CH2, 4H), 2.92-3.05 (m, CH2NH, 2H), 3.15-3.21 (dd, JA=1.85 Hz, JB=14.63Hz, 1 H), 3.56 (t, 1 H), 3.79 (t, 1 H), 3.89^1.21 (m, 4H), 4.35 (m, 1 H), 4.42-4.74 (2xd, CH2Carom, 8H), 5.14 (s, CH2Carom, 2H), 7.18-7.44 (m, CHarom, 25H)
The compound is deprotected using the herein described method to yield
Figure imgf000029_0003
and tested in an enzymatic assay as described herein elsewhere. The activity of the compound against various galactosidases is noted. Benzyl-(Z)-(hexylamino)((2R,3S,4R,5S)-3,4,5-tris(benzyloxy)-2-((benzyloxy)- methyl)piperidin-1 -yl)methylene)carbamate
Figure imgf000030_0001
dH (300 MHz; CDCI3; Me4Si) 0.82-0.87 (t, CH3, J=6.78 Hz, 3H), 1.14-1.34 (m, CH2, 8H), 2.89-3.04 (m, CH2NH, 2H), 3.15-3.20 (dd, JA=1.91 Hz, JB=14.78Hz, 1 H), 3.54 (t, 1 H), 3.79 (t, 1 H), 3.89^1.05 (m, 4H), 4.17-4.22 (m, 1 H), 4.32-4.74 (CH2Carom, 8H), 5.12 (s, CH2Carom, 2H), 7.18-7.44 (m, CHarom, 25H).
The compound is deprotected using the herein described method to yield
Figure imgf000030_0002
and tested in an enzymatic assay as described herein elsewhere. The activity of the compound against various galactosidases is noted.
Benzyl-(Z)-(octylamino)((2R,3S,4R,5S)-3,4,5-tris(benzyloxy)-2-((benzyloxy)- methyl)piperidin-1 -yl)methylene)carbamate
Figure imgf000030_0003
dH (300 MHz; CDCI3; Me4Si) 0.85-0.89 (t, CH3, J=6.74 Hz, 3H), 1.15-1.32 (m, CH2, 12H), 2.93-3.04 (m, CH2NH, 2H), 3.15-3.20 (dd, JA=1.93 Hz, JB=14.82Hz, 1 H), 3.55 (t, 1 H), 3.77-3.79 (t, 1 H), 3.89-4.05 (m, 4H), 4.11-4.22 (m, 1 H), 4.35-4.74 (CH2Carom, 8H), 5.14 (s, CH2Carom, 2H), 7.18-7.44 (m, CHarom, 25H).
The compound is deprotected using the herein described method to yield
Figure imgf000030_0004
and tested in an enzymatic assay as described herein elsewhere. The activity of the compound against various galactosidases is noted. N-1 -Octylguanidine-1 -deoxynojirimycine
Figure imgf000031_0001
dH (500 MHz; D20) 0.74-0.86 (t, 3H), 1.16-1.34 (m, 12H), 1.50-1.62 (m, 2H), 3.17- 3.26 (m, 2H), 3.50-3.55 (m, 2H), 3.60 (d, 2H), 3.76- 3.82 (m, 2H), 3.82-3.90 (m, 2H).
dHSQC (500 MHz; D20) 28.0, 40.3, 45.6, 36.6, 42.5, 42.8, 56.8, 59.8, 82.6, 87.5, 73.8, 78.3, 85.0. LRMS calcd for C15H32N304 [M + H]+, 318.24, found 31
General Procedure for Enzyme Inhibition Assays
[79] Glycosidases used in the inhibition studies were purchased from Sigma; a- galactosidase (from green coffee beans; G8507), β-galactosidase (from bovine liver, G1875), a-glucosidase (from bakers yeast; G5003), β-glucosidase (from almonds; G451 1), a- mannosidase (from Jack beans; M7257), β-mannosidase (from Helix pomatia; M9400) and Naringinase (from Penicillium decumbens; N 1385). The corresponding p-nitrophenyl glycosides substrates were purchased from Carbosynth Limited.
[80] Inhibition assays were performed in either phosphate or acetate buffer at the optimum pH for each enzyme. Determination of the IC50 values of the iminosugars were carried out by spectrophotometrically measuring the residual hydrolytic activities of the glycosidases on the corresponding p-nitrophenyl glycosides substrate in the presence of a concentration range of iminosugar derivatives. The incubation mixture consisted of 15 μΙ_ of inhibitor solution in water (0.1 U/mL) and 15 μΙ_ of enzyme solution. The concentrations of the enzyme were adjusted so that the reading for the final absorbance was in the range of 0.5 - 1.5 units.
[81] Inhibitor and enzyme solutions were mixed in a disposable 96-well microtiter plate and then incubated at room temperature for 5 minutes. Next the reactions were initiated by addition of 75 μΙ_ of a solution of the corresponding p-nitrophenyl glycosides substrate solution in the appropriate buffer at the optimum pH for the enzyme. After the reaction mixture was incubated at 37 °C for 30 min, the reaction was quenched with 0.5M Na2C03 (240 μΙ_) and the absorbance of 4-nitrophenol released from the substrate was read immediately at 405 nm using a BioTek μθ^ηί Microplate Spectrophotometer.
[82] IC50 values were determined as a concentration of the iminosugars that inhibits 50% of the enzyme activity under the assay conditions. IC50 values were determined graphically with GraphPad Prism (version 5.0) by making a plot of percentage inhibition versus the log of inhibitor concentration, using at least 8 different inhibitor concentrations (triplicate). [83] The results for various enzymes and iminosugars are presented in the Figures 1-7 and in tables below.
8 : /V-Hexyl-1-deoxynojirimycin
10 : A/-1-butylurea-1-deoxynojirimycin
13 : (2R, 3R, 4R, 5S)-/V-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1- carboximidamide hydrochloride salt;
15: (2R, 3R, 4R, 5S)-3,4,5-trihydroxy-2-(hydroxymethyl)-/V-octylpiperidine-1- carboximidamide hydrochloride
17:(2 , 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-(2-hydroxyethoxy)ethyl) 2-(hydroxymethyl)- piperidine-1-carboximidamide hydrochloride;
19: (2R, 3R, 4R, 5S)-3,4,5-trihydroxy-/V-(2-hydroxyethyl)-2-(hydroxymethyl)-piperidine-1- carboximidamide hydrochloride;
23: (2R, 3R, 4R, 5S)-/V-benzyl-3,4,5-trihydroxy- 2-(hydroxymethyl)-piperidine-1- carboximidamide hydrochloride;
21 : (2R, 3R, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-/V-(3-phenylpropyl)piperidine-1- carboximidamide hydrochloride;
25:(2 , 3R, 4R, 5S)-/V-(3-(adamantylmethoxy)propyl)-3,4,5-trihydroxy- 2- (hydroxymethyl)piperidine-l-carboximidamide hydrochloride.
Enzyme 15 17 19 23 21 25
Alpha glucosidase 14 506 256 >1000 >1000 >1000 (Bakers yeast G5003)
Beta glucosidase 25 >1000 >1000 43 72 138 (Almonds G4511)
Alpha galactosidase 23 >1000 149 >1000 116 >1000 (green coffee beans; G8507)
Beta galactosidase 3 >1000 215 5 6 6 (Bovine liver G1875)
Alpha- mannosidase 80 >1000 >1000 >1000 >1000 >1000 (Jack Beans M7257)
Naringinase >1000 12 21 27 43 >1000
(Penicillium decimbens N1385)
Figure imgf000033_0001
The other guanidine derivatives of gluco and galacto-based iminosugar compounds described herein are tested in the enzymatic assay under the same protocol and the effect the activity of the enzymes is observed. Citation List
Patent Literature
[84] JP60-224675
[85] US 4806650
[86] US6177447
[87] WO00/33843
[88] US2006/011 14000
[89] US5273981
[90] EP536402
[91] WO2006/125141
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[102] Martin, N.I. et al. (2006) Organic Letters, 8, 4035-4036
[103] Greene's Protective Groups in Organic Synthesis, Fourth Edition John Wiley & Sons, Inc., 2007, chapter 2.
[104] Wennekes, T.; Lang, B.; Leeman, M.; van der Marel, G.A.; Smits, E.; Weber, M.; van Wiltenburg, J.; Wolberg, M.; Aerts, J.M.F.G.; Overkleeft, H.S. J. Org. Chem. 2007, 72, 1088- 1097.
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Claims

C L A I M S
1. A com
wherein
Figure imgf000036_0001
is a 5, 6, 7 or 8-membered nitrogen-containing cyclic compound;
wherein X is O or NR7;
wherein R1 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-20 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1 is optionally substituted with one or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2.
wherein R2 is H or a straight or branched alkyl, cycloalkyl, alkenyl, alkynyl, alkoxyalkyl or aminoalkyl containing 1-12 carbon atoms, an aryl, alkylaryl, heteroaryl, heteroalkyl, alkoxy(het)aryl containing 5-12 ring atoms, wherein R1 is optionally substituted with on or more -OH, -COOH, -CI, -F, -CF3, -OCF3, -0-C(=0)N-(alkyl)2.
wherein R3, R4, R5, R6 are independently H or a hydroxyl protecting group;
wherein R7 is H, C1-C6 alkyl;
and pharmaceutically acceptable salts, tautomers, enantiomers stereoisomers and/or esters thereof.
A compound according to claim 1 , wherein R1 and /or R2 is, independently, H or a straight or branched alkyl or cycloalkyl, containing 1-20 carbon atoms, preferably H straight alkyl containing 1-12 carbon atoms, more preferably H.
3. A compound according to claim 1 , wherein
Figure imgf000036_0002
is a piperidine-based iminocyclitols such as 1-deoxymannonojiromycin, 1- deoxyaltronojiromycin, 1-deoxygalactonojirimycin and 1-deoxyallonojiromycin
Figure imgf000037_0001
4. A compound according to claims 1-3, wherein the (substituted) hydroxyl groups on the nitrogen-containing cyclic compound have an orientation selected from the group cons
Figure imgf000037_0002
5. A compound according to claims 1-4 , wherein the R5 and R6 substituted hydroxyl
groups on the nitrogen-containing cyclic compound have an orientations selected from the grou
Figure imgf000037_0003
6. A compound according to claims 1-5, wherein the hydroxyl protecting group is selected form the group consisting of Acetyl (Ac), Benzoyl (Bz), Benzyl (Bn), β- Methoxyethoxymethyl ether (MEM), Dimethoxytrityl, [bis-(4- methoxyphenyl)phenylmethyl] (DMT), Methoxymethyl ether (MOM), Methoxytrityl [(4- methoxyphenyl)diphenylmethyl, MMT), p-Methoxybenzyl ether (PMB), Methylthiomethyl ether, PivaloyI (Piv), Tetrahydropyranyl (THP), Trityl (Tr), Silyl ether (most popular ones include trimethylsilyl (TMS), tert-butyldimethylsilyl (TBDMS), tri-iso-propylsilyloxymethyl (TOM), and triisopropylsilyl (TIPS) ethers), Methyl Ethers, Ethoxyethyl ethers (EE), preferably a benzyl (Bn) -protecting group.
7. A compound according to claim 1-6, wherein X= O.
8. A compound according to claim 1-6, wherein X= NR7
A compound according to claims 1-8, having the structure
Figure imgf000038_0001
Figure imgf000039_0001
10. A compound according to claims 1-9, wherein the compound is selected from the group consisting of
Λ/-1 -butylurea-1 -deoxynojirimycin; (2R, 3R, 4R, 5S)-/V-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-2-(hydroxymethyl)-/V-octylpiperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-hydroxyethyl)-2-(hydroxymethyl)-piperidine-1 carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-(2-hydroxyethoxy)ethyl) 2-(hydroxymethyl)- piperidine-1 -carboximidamide;
(2R, 3R, 4R, 5S)-/V-benzyl-3,4,5-trihydroxy- 2-(hydroxymethyl)-piperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-/V-(3-phenylpropyl)piperidine-1 carboximidamide;
(2R, 3R, 4R, 5S)-/V-(3-(adamantylmethoxy)propyl)-3,4,5-trihydroxy- 2- (hydroxymethyl)piperidine-l -carboximidamide;
(2R, 3S, 4R, 5S)-/V-butyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1- carboximidamide;
(2R, 3S, 4R, 5S)-/V-hexyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1- carboximidamide;
(2R, 3S, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-N-octylpiperidine-1- carboximidamide;
11. A compound according to claims 1-10, which is the hydrochloride salt of
(2R, 3R, 4R, 5S)-/V-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-2-(hydroxymethyl)-/V-octylpiperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-hydroxyethyl)-2-(hydroxymethyl)-piperidine-1 carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy-N-(2-(2-hydroxyethoxy)ethyl) 2-(hydroxymethyl)- piperidine-1 -carboximidamide;
(2R, 3R, 4R, 5S)-/V-benzyl-3,4,5-trihydroxy- 2-(hydroxymethyl)-piperidine-1- carboximidamide;
(2R, 3R, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-/V-(3-phenylpropyl)piperidine-1 carboximidamide;
(2R, 3R, 4R, 5S)-/V-(3-(adamantylmethoxy)propyl)-3,4,5-trihydroxy- 2- (hydroxymethyl)piperidine-l -carboximidamide; {2R, 3S, 4R, 5S)-/V-butyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1- carboximidamide;
(2R, 3S, 4R, 5S)-/V-hexyl -3,4,5-trihydroxy- 2-(hydroxymethyl)piperidine-1- carboximidamide;
(2R, 3S, 4R, 5S)-3,4,5-trihydroxy- 2-(hydroxymethyl)-N-octylpiperidine-1- carboximidamide.
A compound according to claim 1 , wherein the pharmaceutical acceptable salt is selected from the group consisting of 1-hydroxy-2-naphthoic acid, 2,2-dichloroacetic acid, 2-hydroxyethanesulfonic acid, 2-oxoglutaric acid, 4-acetamidobenzoic acid, 4- aminosalicylic acid, acetic acid, adipic acid, ascorbic acid (L), aspartic acid (L), benzenesulfonic acid, benzoic acid, camphoric acid (+), camphor-10-sulfonic acid (+), capric acid (decanoic acid), caproic acid (hexanoic acid), caprylic acid (octanoic acid), carbonic acid, cinnamic acid, citric acid, cyclamic acid, dodecylsulfuric acid, ethane-1 ,2- disulfonic acid, ethanesulfonic acid, formic acid, fumaric acid, galactaric acid, gentisic acid, glucoheptonic acid (D), gluconic acid (D), glucuronic acid (D), glutamic acid, glutaric acid, glycerophosphoric acid, glycolic acid, hippuric acid, hydrobromic acid, hydrochloric acid, isobutyric acid, lactic acid (DL), lactobionic acid, lauric acid, maleic acid, malic acid (- L), malonic acid, mandelic acid (DL), methanesulfonic acid , naphthalene-1 ,5-disulfonic acid, naphthalene-2-sulfonic acid, nicotinic acid, nitric acid, oleic acid, oxalic acid, palmitic acid, palmoic acid, phosphoric acid, proprionic acid, pyroglutamic acid (- L), salicylic acid, sebacic acid, stearic acid, succinic acid, sulfuric acid, tartaric acid (+ L), thiocyanic acid, toluenesulfonic acid (p), undecylenic acid, preferably the hydrochloride or hydrobromide.
Method for the synthesis of compounds as defined in claim 1-12, wherein X=NR7, comprising the steps of
(a) reacting an amine with a carboxybenzylthiocyanate to provide a corresponding thiourea having the structure
Figure imgf000041_0001
(b) reacting a 5, 6, 7 or 8-membered nitrogen-containing cyclic compound of the
general formula: with the thiourea of s e product of to yield
Figure imgf000042_0001
wherein R1 , R2, R3, R4, R5, R6 and R7 are as defined in claims 1-8.
14. Method according claim 13, wherein the amine is a primary amine, R NH2.
15. Method according claim 13 or 14, wherein the hydrogenolysis is in the presence of a catalyst.
Method for the synthesis of a thiourea of the general formula
Figure imgf000042_0002
by reacting a carboxybenzylthiocyanate with an amine R1 R2NH, preferably a primary amine R1 NH2, and wherein R1 and R2 are is as defined in claims 1-3.
17. A compound of the general formula
Figure imgf000042_0003
H
wherein Cbz is carboxymethyl and R1 and R2 is as defined in claims 1-6.
18. Method for modifying (increasing, reducing) glycosidase activity comprising contacting the glycosides with an effective amount of a compound according to claims 1-12.
19. Method according to claim 18, wherein the glycosidase is selected from the group consisting of alpha-galactosidase, beta-galactosidase, alpha-glucosidase, beta glucosidase, alpha-mannosidase, beta-mannosidase, naringinase.
20. Method according to claim 18-19, wherein the glycosidase is a purified or recombinant functional glycosidase enzyme.
21. Method according to claim 18-19, wherein the contacting is in vitro or in vivo.
22. Method for the treatment of Pompe's disease, a glycolipid storage disease such as Gaucher's disease, Tay Sachs disease, Sandhoff disease, Fabry disease, GM1 gangliodosis, and fucosidosis, lysosomal storage disorders, diabetes, viral infections, HIV, Human hepatitis C (HCV), dengue virus, tuberculosis, Niemann-Pick diseases and cancer comprising administering to an individual in need thereof an effective amount of a compound according to any of the claims 1-12.
23. Medicament comprising a compound according to any of the claims 1-12
24. Pharmaceutical composition comprising a compound to any of the claims 1-12 and a pharmaceutically acceptable carrier.
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WO2015039010A3 (en) * 2013-09-16 2015-05-07 Unither Virology, Llc Deoxynojirimycin derivatives and methods of their using
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