WO2013158032A1 - Methods for increasing cotton fiber length - Google Patents

Abstract

The present invention relates to the field of plant molecular biology, more particularly cotton WRINKLED 1 -like (WREL) genes. More specifically, the present invention relates to cotton WRIL genes whose products act as transcription factors of genes involved in fatty acid biosynthesis. The present invention also relates to methods of increasing cotton fiber length in cotton. In one embodiment, the methods involve modulating the level of activity of an enzyme involved in a fatty acid biosynthesis in the host cotton cell and/or culturing the host cotton cell. In another embodiment, the methods involve the manipulation of transcription factors which can regulate an enzyme involved in fatty acid biosynthesis.

Description

METHODS TOR IN∞ SEQUENCE SUBMISSION

[0001] The present application is being filed along with a Sequence Listing in electronic format. The Sequence Listing is entitled 2577215PCTSequenceListing.txt, created on 18 April 2012 and is 95 kb in size. The information in the electronic format of the Sequence Listing is incorporated herein by reference in its entirety.

BACKGROUND OF THE INVENTION

[0002] The present invention relates to the field of plant molecular biology, more particularly cotton WRINKLED 1 -like (WRIL) genes whose encoded proteins act as transcription factors of genes involved in fatty acid biosynthesis. The present invention also relates to methods of increasing cotton fiber length in cotton. In one embodiment, the methods involve modulating the level of activity of an enzyme involved in a fatty acid biosynthesis in the host cotton cell and/or culturing the host cotton cell. In another embodiment, the methods involve the manipulation of transcription factors which can regulate a gene encoding an enzyme involved in fatty acid biosynthesis.

[0003] The publications and other materials used herein to illuminate the background of the invention or provide additional details respecting the practice, are incorporated by reference, and for convenience are respectively grouped in the Bibliography.

[0004] Cotton (Gossypiwn spp.) is the world's most important fiber plant and a significant oilseed crop, being grown in more than 80 countries with a record of 122 million 480-pound bales in world production during the 2006/2007 growing season (United States Department of Agriculture-Foreign Agricultural Service). The deficit between consumption and production has happened in 1994/1995 and is forecasted to continue to widen to 2.5 million 480-pound bales in the 2009/2010 growing season (United States Department of Agriculture-Foreign Agricultural Service [USDA-FAS] 2009). Cotton production provides income for approximately 100 million families, and approximately 150 countries are involved in cotton import and export. Its economic impact is estimated to be approximately $500 billion/ year worldwide. Moreover, modifying cotton-seed for food and feed could profoundly enhance the nutrition and livelihoods of millions of people in food-challenged economies. Cotton is also a potential candidate plant of renewable biofuel. Cotton fiber is composed of nearly pure cellulose. Compared to lignin, cellulose is easily convertible to biofuels. Optimized cotton fiber production and processing will ensure that this natural renewable product will be competitive with petroleum-derived synthetic non-renewable fiber to ensure more sustainable development.

[0005] At present, seeds are always the most important part used for human and animal nutrition for crops. Major seed storage compounds include such as triacylglycerol (TAG), proteins, and carbohydrates, which are typically making up most of the mass of mature seeds, and the proportions of these components have large species-specific variations. Since seed composition and yield are important traits for breeding and agricultural research, partitioning of carbon and nitrogen into the major storage products within the developing seed is an important process. In model plant Arabidopsis, one AP2-domain containing transcription factor WRINKLED1 (WRI1; At3g54320) controls the conversion of sucrose into triacylglycerol and showed a strong role in controlling carbon and nitrogen flux into TAG biosynthesis and accumulation (Cernac and Benning, 2004).

[0006] As the most important agronomic traits of cotton are fiber quality and yield it is important to improve our understanding of genes underlying cotton fiber development. Cotton fibers are single-celled seed trichomes and the developing cotton fiber is considered as an excellent model system for studying the dynamics and functions of the cytoskeleton (Seagull, 1990). It is important to investigate how dynamic changes of the cytoskeleton and the expression of cytoskeleton-related genes contribute to fiber development. Some progress has been made in this direction. GhActin, a cytoskeleton protein, has been proven to be important for fiber elongation but not fiber initiation (Li et al, 2005). Overexpression of a fiber-preferential actin- binding protein (GhPFN2) blocked cell elongation prematurely (Wang et al, 2010). On the other hand, down-regulation of the actin depolymerizing factor gene (ADF) has been reported to increase fiber length and fiber strength (Wang et al, 2009).

[0007] The ultimate objective of gene function analysis in cotton is to utilize them to increase cotton fiber yield and quality. At present, there are relative few genes which have been successfully used to transform cotton and increase cotton fiber yield and quality. Many of them come from carbohydrate biosynthesis genes. For example, the transgenic over-expression of sucrose synthase gene (sus and sps) and cellulose synthesis gene (acsA and acsB) improved cotton fiber length and strength (Ruan et al, 2003; Jiang et al, 2011; ). Similarly, higher xyloglucan endotransglycosylase/hydrolase (XTH) activity can promote fiber cell elongation and transgenic cotton with over-expressed xth gene had increased mature fiber length (Lee et al, 2010). The overexpression of carbohydrate biosynthesis genes may partition fixed carbon toward carbohydrates thus increase cotton fiber yield and quality. It is interesting to find some transcriptional factors which can regulate the carbon flow between lipids and carbohydrates in reproductive organs of cotton. Work with Arabidopsis has shown that over-expression of an Arabidopsis WRI1 cD A under the control of the cauliflower mosaic virus 35S promoter led to increased seed oil content (Cernac and Benning, 2004). On the other hand, seed oil accumulation in an Arabidopsis splicing mutant allele, wril-1, was reduced. Glycolysis was compromised in this mutant, rendering developing embryos unable to efficiently convert sucrose into precursors of triacylglycerol biosynthesis (Cernac and Benning, 2004).

[0008] The availability of genetic resources and cotton gene sequences will facilitate the improvement of key agronomic traits of cotton. To this end, a public effort was initiated in 2007 to determine the complete cotton genomic sequence. While this effort is underway there is an ever-expanding set of Gossypiurn EST sequences (about 400,000 now) being deposited in the public database. Notwithstanding the availability of such a huge amount of cotton gene sequences the functions of only a small number of genes have been identified. This is mainly because large scale analysis of cotton gene function has been constrained by the laborious and time-consuming process of generating transgenic cotton. Moreover, many cotton cultivars are recalcitrant to genetic transformation. Therefore, there is an urgent need to develop a rapid method for species independent functional analysis of Gossypiurn genes on a genomic scale.

[0009] Virus-induced gene silencing (VIGS) offers an attractive alternative to transgenic technology as it allows the investigation of gene functions without plant transformation (Ruiz et ai, 1998; Burch-Smith et ai, 2004). A partial fragment of a candidate gene is inserted into the virus vector to generate a recombinant virus. Infection of plants with this recombinant virus leads to the production of virus-related small interfering RNAs (siRNAs) (Baulcombe, 2004), which can mediate degradation of related endogenous gene transcripts, resulting in silencing of the candidate gene expression in inoculated plants (Brigneti et ai, 2004; Burch-Smith et ai, 2004). The silencing effect on endogenous gene expression can usually be assayed 1-2 weeks after virus inoculation. VIGS has become one of the most widely used and indeed important reverse genetics tools, especially for non-model plants.

[0010] It is desired to identify genes that are involved in biosynthetic pathways that the modulation of which may lead to increased cotton fiber length. It is also desired to develop methods for increasing cotton fiber length. SUMMARY OF THE INVENTION

[0011] The present invention relates to the field of plant molecular biology, more particularly cotton WRINKLED 1 -like (WRIL) genes. More specifically, the present invention relates to cotton WRIL genes whose products act as transcription factors of genes involved in regulating fatty acid biosynthesis. The present invention also relates to methods of increasing cotton fiber length in cotton. In one embodiment, the methods involve modulating the level of activity of an enzyme involved in a fatty acid biosynthesis in the host cotton cell and/or culturing the host cotton cell. In another embodiment, the methods involve the manipulation of transcription factors which can regulate a gene encoding an enzyme involved in fatty acid biosynthesis.

[0012] In a first aspect, the present invention provides an isolated nucleic acid encoding a GAWRIL protein comprising the amino acid sequence set forth in SEQ ID NO:2. In one embodiment, the nucleic acid comprises the nucleotide sequence set forth in SEQ ID NO:l . In another embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 25-1338 of SEQ ID NO: l . In an additional embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 25-1341 of SEQ ID NO: l . In a further embodiment, the nucleic acid further comprises a plant operable promoter operably linked to the nucleic acid. In one embodiment, the promoter is a seed specific promoter. In another embodiment, the seed specific promoter is a cotton seed specific promoter.

[0013] In a second aspect, the present invention provides an isolated nucleic acid encoding a GrWRIL protein comprising the amino acid sequence set forth in SEQ ID NO:4. In one embodiment, the nucleic acid comprises the nucleotide sequence set forth in SEQ ID NO:3. In another embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 32-1345 of SEQ ID NO:3. In an additional embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 32- 1348 of SEQ ID NO:3. In a further embodiment, the nucleic acid further comprises a plant operable promoter operably linked to the nucleic acid. In one embodiment, the promoter is a seed specific promoter. In another embodiment, the seed specific promoter is a cotton seed specific promoter.

[0014] In a third aspect, the present invention provides a construct or vector comprising an isolated nucleic acid as described herein. In one embodiment, the construct or vector is an expression construct or vector. In another embodiment, the construct or vector further comprises a selectable marker. In a further embodiment, the construct or vector comprises a Cre-lox recombination marker free system. [0015] In a fourth aspect, the present invention provides a transgenic plant comprising a nucleic acid or vector described herein. In one embodiment, the transgenic plant is a cotton plant.

[0016] In a fifth aspect, the present invention provides for the down regulation of a cotton WRIL gene. In one embodiment, the down regulation of a cotton WRIL gene involves using RNA interference (RNAi), including microRNA and hairpin RNA. In another embodiment, the down regulation of a cotton WRIL gene involves using viral induced gene silencing (VIGS). In one embodiment, a nucleic acid is provided which down regulates the GhWRIL gene. In another embodiment, a nucleic acid is provided which down regulates the GrWRIL gene. In one embodiment, the nucleic acid further comprises a plant operable promoter operably linked to the nucleic acid. In one embodiment, the promoter is a seed specific promoter. In another embodiment, the seed specific promoter is a cotton seed promoter. According to this aspect, the present invention also provides a vector comprising an isolated nucleic acid as described herein. In one embodiment, the vector is an expression vector. In another embodiment, the vector further comprises a selectable marker. In a further embodiment, the vector comprises a Cre-lox recombination marker free system. According to this aspect, the present invention further provides a transgenic or infected plant comprising a nucleic acid or vector described herein. In one embodiment, the transgenic or infected plant is a cotton plant.

[0017] In a sixth aspect, the present invention provides methods of increasing cotton fiber length in cotton. In one embodiment, a method involves modulating the level of activity of an enzyme involved in fatty acid biosynthesis in the host cotton cell and/or culturing the host cotton cell. In one embodiment, the enzyme is acetyl-CoA carboxylase (ACCase), β-ketoacyl-acyl carrier protein synthase I (KASI) or enoyl-acyl carrier protein reductase (ENR). In another embodiment, a method involves the manipulation of transcription factors which can regulate an enzyme involved in fatty acid biosynthesis. In one embodiment, the transcription factor is a cotton WRIL protein. In another embodiment the cotton WRIL protein is a GhWRIL protein or a GrWRIL protein.

BRIEF DESCRIPTION OF THE FIGURES

[0018] Figures 1A and IB show amino acid sequence alignment (Fig. 1A) and phylogenetic tree (Fig. IB) of WRIl-like proteins. AtWRIl protein sequence can be accessed from GenBank Accession No. AAP80382 and is set forth in SEQ ID NO:5. GhWRI-like (GhWRIL), a Gossypium hirsutum (upland cotton, tetraploid) WRIL homolog, protein sequence is set forth in SEQ ID NO:2. GrWRIL, another WRIL homolog from wild cotton Gossypium raimondii (one of the putative progenitor species of tetraploid cotton), protein sequence is set forth in SEQ ID NO:4. JcWRIL, a Jatropha curcas WRDL horaolog, protein sequence can be accessed from International application publication NO. WO 2010/071608, and is set forth in SEQ ID NO:6. ZmWRIl-a, a Zea mays WRI1 homolog, protein sequence can be accessed from GenBank Accession No. ACG32367 and is set forth in SEQ ID NO:7. ZmWRIl-b, another Zea mays WRI1 homolog, protein sequence can be accessed from GenBank Accession No. NP_001131733 and is set forth in SEQ ID NO:8.

[0019] Figure 2 shows phenotypes of vector control (CK) and WRI1 -silenced cotton bolls and seeds

[0020] Figure 3 shows the longer fiber on WRI1 -silenced cotton bolls (P<0.001) compared with CK bolls.

[0021] Figure 4 shows that both seed weight and oil content reduced in G iWR/L-silenced cotton seed.

[0022] Figure 5 shows that fatty acid profile changed in G/iWR/L-siienced cotton seed.

[0023] Figure 6 shows the down-regulation of fatty acid biosynthesis genes in GhWRIL- silenced cotton seed.

[0024] Figure 7 shows the partial acetyl-CoA carboxylases protein sequence alignment between Gossypium hirsutum (SEQ ID NO: 10) and Arabidopsis thaliana (SEQ ID NO:l 1).

[0025] Figures 8A and 8B show the KASI and KASII protein sequence alignments. Fig. 8A shows the alignment for Gossypium hirsutum (SEQ ID NO: 13 )and Arabidopsis thaliana (SEQ ID NO: 14) KASI. Fig. 8B shows the alignment for Gossypium hirsutum (SEQ ID NO: 16), Arabidopsis thaliana (SEQ ID NO: 17) and Jatropha curcas (SEQ ID NO: 18) KASH

[0026] Figures 9A-9D show severe phenotypes in acetyl-CoA carboxylase gene silenced cotton plants. Fig. 9A: sTRVl+sTRV2 vector control treated cotton plants. Figs. 9B-9D: sTRV 1 +sTRV-GhACCase 1 treated cotton plants .

[0027] Figures 10A-10E show severe phenotypes of key gene of fatty acid elongation KASI and KASII silenced cotton plants.

DETAILED DESCRIPTION OF THE INVENTION

[0028] The present invention relates to the field of plant molecular biology, more particularly cotton WRINKLED 1 -like (WRIL) genes. More specifically, the present invention relates to cotton WRIL genes whose products act as transcription factors of genes involved in fatty acid biosynthesis. The present invention also relates to methods of increasing cotton fiber length in cotton. In one embodiment, the methods involve modulating the level of activity of an enzyme involved in a fatty acid biosynthesis in the host cotton cell and/or culturing the host cotton cell. In another embodiment, the methods involve the manipulation of transcription factors which can regulate an enzyme involved in fatty acid biosynthesis.

[0029] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as is commonly understood by one of skill in the art to which the invention belongs.

[0030] As used herein, "allele" refers to any of one or more alternative forms of a gene locus, all of which alleles relate to a trait or characteristic. In a diploid cell or organism, the two alleles of a given gene occupy corresponding loci on a pair of homologous chromosomes.

[0031] As used herein, "gene" refers to a nucleic acid sequence that encompasses a 5' promoter region associated with the expression of the gene product, any intron and exon regions and 3' or 5' untranslated regions associated with the expression of the gene product.

[0032] As used herein, "genotype" refers to the genetic constitution of a cell or organism.

[0033] As used herein, "phenotype" refers to the detectable characteristics of a cell or organism, which characteristics are the manifestation of gene expression.

[0034] The terms "polynucleotide," nucleic acid" and "nucleic acid molecule are used interchangeably herein to refer to a polymer of nucleotides which may be a natural or synthetic linear and sequential array of nucleotides and/or nucleosides, including deoxyribonucleic acid, ribonucleic acid, and derivatives thereof. It includes chromosomal DNA, self-replicating plasmids, infectious polymers of DNA or RNA and DNA or RNA that performs a primarily structural role. Unless otherwise indicated, nucleic acids or polynucleotide are written left to right in 5' to 3' orientation, Nucleotides are referred to by their commonly accepted single-letter codes. Numeric ranges are inclusive of the numbers defining the range.

[0035] The terms "polypeptide," "peptide," and "protein" are used interchangeably herein to refer to a polymer of amino acid residues. The terms apply to amino acid polymers in which one or more amino acid residue is an artificial chemical analogue of a corresponding naturally occurring amino acid, as well as to naturally occurring amino acid polymers. Amino acids may be referred to by their commonly known three-letter or one-letter symbols. Amino acid sequences are written left to right in amino to carboxy orientation, respectively. Numeric ranges are inclusive of the numbers defining the range.

[0036] As used herein, the term "increased fiber length" or "fiber having an increased length" refers to cotton fibers in transgenic or infected plants that are at least 4% longer, preferably at least 5 longer, more preferably at least 6% longer and most preferably at least 7% longer than cotton fibers in non-transgenic or non-infected plants.

[0037] Thus in one aspect, the present invention provides an isolated nucleic acid encoding a G/iWRIL protein comprising the amino acid sequence set forth in SEQ ID NO:2. In one embodiment, the nucleic acid comprises the nucleotide sequence set forth in SEQ ID NO:l. In another embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 25-1338 of SEQ ID NO:l. In an additional embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 25-1341 of SEQ ID NO:l. In a further embodiment, the nucleic acid further comprises a plant operable promoter operably linked to the nucleic acid. In one embodiment, the promoter is a seed specific promoter. In another embodiment, the seed specific promoter is a cotton seed specific promoter.

[0038] In a second aspect, the present invention provides an isolated nucleic acid encoding a GrWRJOL protein comprising the amino acid sequence set forth in SEQ ID NO:4. In one embodiment, the nucleic acid comprises the nucleotide sequence set forth in SEQ ID NO:3. In another embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 32-1345 of SEQ ID NO:3. In an additional embodiment, the nucleic acid comprises the nucleotide sequence set forth as nucleotides 32-1348 of SEQ ID NO:3. In a further embodiment, the nucleic acid further comprises a plant operable promoter operably linked to the nucleic acid. In one embodiment, the promoter is a seed specific promoter. In another embodiment, the seed specific promoter is a cotton seed specific promoter.

[0039] In a third aspect, the present invention provides a construct or vector comprising an isolated nucleic acid as described herein. In one embodiment, the construct or vector is an expression construct or vector. In another embodiment, the construct or vector further comprises a selectable marker. In a further embodiment, the construct or vector comprises a Cre-lox recombination marker free system.

[0040] In a fourth aspect, the present invention provides a transgenic plant comprising a nucleic acid or vector described herein. In one embodiment, the transgenic plant is a cotton plant.

[0041] In a fifth aspect, the present invention provides for the down regulation of a cotton WRIL gene. In one embodiment, the down regulation of a cotton WRIL gene involves using RNA interference (RNAi), including microRNA and hairpin RNA. In another embodiment, the down regulation of a cotton WRIL gene involves using viral induced gene silencing (VIGS). In one embodiment, a nucleic acid is provided which down regulates the GhWRIL gene. In another embodiment, a nucleic acid is provided which down regulates the GrWRIL gene. In one embodiment, the nucleic acid further comprises a plant operable promoter operably linked to the nucleic acid. In one embodiment, the promoter is a seed specific promoter. In another embodiment, the seed specific promoter is a cotton seed promoter. According to one embodiment, the present invention also provides a vector comprising an isolated nucleic acid as described herein. In one embodiment, the vector is an expression vector. In another embodiment, the vector further comprises a selectable marker. In a further embodiment, the vector comprises a Cre-lox recombination marker free system. According to this aspect, the present invention further provides a transgenic or infected plant comprising a nucleic acid or vector described herein. In one embodiment, the transgenic or infected plant is a cotton plant.

[0042] According to this aspect, the nucleic acid is selected to inhibit expression of the native gene or to silence the native gene within a plant's tissues to achieve a desired phenotype. In one embodiment, expression of the native gene is inhibited. Such inhibition might be accomplished, for example, with transformation of a plant cell to comprise a promoter linked to an antisense nucleotide sequence, hairpin, RNA interfering molecule, double stranded RNA, microRNA or other nucleic acid molecule, such that tissue-preferred expression of the molecule interferes with translation of the mRNA of the native DNA sequence or otherwise inhibits expression of the native DNA sequence in plant cells. For further description of RNAi techniques or microRNA techmques, see, e.g., U.S. Patent Nos. 5,034,323; 6,326,527; 6,452,067; 6,573,099; 6,753, 139; and 6,777,588. See also International Publication Nos. WO 97/01952, WO 98/36083, WO 98/53083, WO 99/32619 and WO 01/75164; and U.S. Patent Application Publication Nos. 2003/0175965, 2003/0175783, 2003/0180945, 2004/0214330, 2005/0244858, 2005/0277610, 2006/0130176, 2007/0265220, 2008/0313773, 2009/0094711, 2009/0215860, 2009/0308041, 2010/0058498 and 201 1/0091975. RNAi molecules or microRNA molecules can be prepared by the skilled artisan using techniques well known in the art, including techniques for the selection and testing of RNAi molecules and microRNA molecules that are useful for down regulating a cotton WRIL gene. In another embodiment, the native gene may be silenced by using VIGS. Such silencing may be accomplished by infecting a cotton plant a VIGS system that contains at least a partial fragment of a candidate gene to be silenced. For further description of a VIGS system useful for cotton, see International Publication No. WO 2010/144058.

[0043] The construct typically includes regulatory regions operatively linked to the 5' side of the nucleic acid described herein (such as a nucleic acid encoding a cotton WRIL protein or a nucleic acid encoding an RNAi molecule to down regulate a cotton WRIL gene) and/or to the 3' side of the nucleic acid. A cassette containing all of these elements is also referred to herein as an expression cassette. The expression cassettes may additionally contain 5' leader sequences in the expression cassette construct. The regulatory regions (i.e., promoters, transcriptional regulatory regions, and translational termination regions) and/or the polynucleotide encoding a signal anchor may be native/analogous to the host cell or to each other. The promoters and tissue-specific promoters, such as seed promoters and especially cotton seed promoters, are particularly useful for preparing constructs for the transformation of cotton. Alternatively, the regulatory regions and/or the polynucleotide encoding a signal anchor may be heterologous to the host cell or to each other. See, U.S. Patent No. 7,205,453 and U.S. Patent Application Publication Nos. 2006/0218670, 2006/0248616 and 20090100536, and the references cited therein. The expression cassettes may additionally contain 5' leader sequences in the expression cassette construct. Such leader sequences can act to enhance translation. Translation leaders are known in the art and include those described in International Publication No. WO 2008/094127 and the references cited therein.

[0044] A number of promoters can be used in the practice of the invention. The promoters can be selected based on the desired outcome. That is, the nucleic acids can be combined with constitutive, tissue-preferred, or other promoters for expression in the host cell of interest. Such constitutive promoters include, for example, the core promoter of the Rsyn7 (WO 99/48338 and U.S. Pat. No. 6,072,050); the core CaMV 35S promoter (Odell et al., 1985); rice actin (McElroy et al., 1990); ubiquitin (Christensen and Quail, 1989; Christensen et al., 1992); pEMU (Last et al., 1991); MAS (Velten et al., 1984); ALS promoter (U.S. Pat. No. 5,659,026), and the like. Other constitutive promoters include, for example, those disclosed in U.S. Pat. Nos. 5,608,149; 5,608,144; 5,604,121 ; 5,569,597; 5,466,785; 5,399,680; 5,268,463; and 5,608,142.

[0045] Other promoters include inducible promoters, particularly from a pathogen-inducible promoter. Such promoters include those from pathogenesis-related proteins (PR proteins), which are induced following infection by a pathogen; e.g., PR proteins, SAR proteins, beta-1,3- glucanase, chitinase, etc. Other promoters include those that are expressed locally at or near the site of pathogen infection. In further embodiments, the promoter may be a wound-inducible promoter. In other embodiments, chemical-regulated promoters can be used to modulate the expression of a gene in a plant through the application of an exogenous chemical regulator. The promoter may be a chemical-inducible promoter, where application of the chemical induces gene expression, or a chemical-repressible promoter, where application of the chemical represses gene expression. In addition, tissue-preferred promoters can be utilized to target enhanced expression of a polynucleotide of interest within a particular plant tissue. Each of these promoters are u

described in U.S. Pat. Nos. 6,506,962, 6,575,814, 6,972,349 and 7,301,069 and in U.S. Patent Application Publication Nos. 2007/0061917 and 2007/0143880. Cotton seed promoters are well known to the skilled artisan and include, but are not limited to the Gh-sp promoter (Song et al., 2000) and the a-globulin B promoter (Sunilkumar et al., 2002). Any other recourse seed specific promoter can be used to, for example soybean 7S storage gene promoter (Qu et al., 2012), Jatropha oleosin promoter (Popluechai et al., 2011), 2S storage protein promoter, and the like.

[0046] Generally, the expression cassette may additionally comprise a selectable marker gene for the selection of transformed cells. Selectable marker genes are utilized for the selection of transformed cells or tissues. Usually, the plant selectable marker gene will encode antibiotic resistance, with suitable genes including at least one set of genes coding for resistance to the antibiotic spectinomycin, the streptomycin phosphotransferase (spt) gene coding for streptomycin resistance, the neomycin phosphotransferase (nptH) gene encoding kanamycin or geneticin resistance, the hygromycin phosphotransferase (hpt or aphiv) gene encoding resistance to hygromycin, acetolactate synthase (als) genes. Alternatively, the plant selectable marker gene will encode herbicide resistance such as resistance to the sulfonylurea-type herbicides, glufosinate, glyphosate, ammonium, bromoxynil, imidazolinones, and 2,4- dichlorophenoxyacetate (2,4-D), including genes coding for resistance to herbicides which act to inhibit the action of glutamine synthase such as phosphinothricin or basta (e.g., the bar gene). See generally, International Publication No. WO 02/36782, U.S. Patent No. 7,205,453 and U.S. Patent Application Publication Nos. 2006/0218670, 2006/0248616, 2007/0143880 and 2009/0100536, and the references cited therein. See also, Jefferson et al. (1991); De Wet et al. (1987); Goff et al. (1990); Kain et al. (1995) and Chiu et al. (1996). This list of selectable marker genes is not meant to be limiting. Any selectable marker gene can be used. The selectable marker gene is also under control of a promoter operable in the plant species to be transformed. Such promoters include those described in International Publication No. WO 2008/094127 and the references cited therein.

[00471 Alternatively, the expression cassette may additionally comprise a Cre-lox recombination marker free system, such as described by Zuo et al. (2001). Such a system is useful for producing selection marker free transgenic cotton plants.

[0048] In preparing the expression cassette, the various DNA fragments may be manipulated, so as to provide for the DNA sequences in the proper orientation and, as appropriate, in the proper reading frame. Toward this end, adapters or linkers may be employed to join the DNA fragments or other manipulations may be involved to provide for convenient restriction sites, removal of superfluous DNA, removal of restriction sites, or the like. For this purpose, in vitro mutagenesis, primer repair, restriction, annealing, resubstitutions, e.g. transitions and transversions may be involved.

[0049] Once a nucleic acid has been cloned into an expression vector, it may be introduced into a plant cell using conventional transformation procedures. The term "plant cell" is intended to encompass any cell derived from a plant including undifferentiated tissues such as callus and suspension cultures, as well as plant seeds, pollen or plant embryos. Plant tissues suitable for transformation include leaf tissues, root tissues, meristems, protoplasts, hypocotyls, cotyledons, scutellum, shoot apex, root, immature embryo, pollen, and anther. "Transformation" means the directed modification of the genome of a cell by the external application of recombinant DNA from another cell of different genotype, leading to its uptake and integration into the subject cell's genome. In this manner, genetically modified plants, plant cells, plant tissue, seed, and the like can be obtained.

[0050] DNA constructs containing the promoters of the present invention can be used to transform any plant and particularly cotton plants. The constructs may be introduced into the genome of the desired plant host by a variety of conventional techniques. Techniques for transforming a wide variety of higher plant species are well known and described in the technical and scientific literature. Transformation protocols may vary depending on the type of plant or plant cell, i.e., monocot or dicot, targeted for transformation, as is well known to the skilled artisan. For example, the DNA construct may be introduced directly into the genomic DNA of the plant cell using techniques such as electroporation and microinjection of plant cell protoplasts, or the DNA constructs can be introduced directly to plant tissue using ballistic methods, such as DNA particle bombardment. Alternatively, the DNA constructs may be combined with suitable T-DNA flanking regions and introduced into a conventional Agrobacterium tumefaciens host vector. The virulence functions of the Agrobacterium tumefaciens host will direct the insertion of the construct and adjacent marker into the plant cell DNA when the cell is infected by the bacteria. Thus, any method, which provides for effective transformation/transfection may be employed. See, for example, U.S. Patent Nos. 7,241,937, 7,273,966 and 7,291,765 and U.S. Patent Application Publication Nos. 2007/0231905 and 2008/0010704 and references cited therein. See also, International Publication Nos. WO 2005/103271 and WO 2008/094127 and references cited therein. Techniques which have been used to transform oil palm include biolistic-mediated transformation and Agrobacterium-medi&ttd transformation. See, for example, Masli et al. (2009); Omidvar et al. (2008); Parveez et al. (2008); Abdullah et al. (2005); Parveez et al. (2000); Chowdhury, et al. (1997); and U.S. Patent Application Publication No. 2009/0038032.

[0051] Transformed plant cells which are derived by any of the above transformation techniques can be cultured to regenerate a whole plant which possesses the transformed genotype and thus the desired phenotype, e.g., a transgenic plant. A "transgenic plant" is a plant into which foreign DNA has been introduced. A "transgenic plant" encompasses all descendants, hybrids, and crosses thereof, whether reproduced sexually or asexually, and which continue to harbor the foreign DNA. Regeneration techniques rely on manipulation of certain phytohormones in a tissue culture growth medium, typically relying on a biocide and/or herbicide marker which has been introduced together with the desired nucleotide sequences. See for example, International Publication No. WO 2008/094127 and references cited therein.

[0052] The foregoing methods for transformation are typically used for producing a transgenic variety in which the expression cassette is stably incorporated. After the expression cassette is stably incorporated in transgenic plants, it can be transferred to other plants by sexual crossing. In one embodiment, the transgenic variety could then be crossed, with another (non-transformed or transformed) variety, in order to produce a new transgenic variety. Alternatively, a genetic trait which has been engineered into a particular cotton line using the foregoing transformation techniques could be moved into another line using traditional backcrossing techniques that are well known in the plant breeding arts. For example, a backcrossing approach could be used to move an engineered trait from a public, non-elite variety into an elite variety, or from a variety containing a foreign gene in its genome into a variety or varieties which do not contain that gene. As used herein, "crossing" can refer to a simple X by Y cross, or the process of backcrossing, depending on the context. Any of a number of standard breeding techniques can be used, depending upon the species to be crossed.

[0053] Once transgenic plants of this type are produced, the plants themselves can be cultivated in accordance with conventional procedures. Transgenic seeds can, of course, be recovered from the transgenic plants. These seeds can then be planted in the soil and cultivated using conventional procedures to produce transgenic plants. The culitvated transgenic plants will express the DNA of interest in a tissue-preferred or tissue-specific manner as described herein.

[0054] In a sixth aspect, the present invention provides methods of increasing cotton fiber length in cotton. In one embodiment, a method involves modulating the level of activity of an enzyme involved in a fatty acid biosynthesis in the host cotton cell or cotton plant. In one embodiment, the enzyme is acetyl-CoA carboxylase (ACCase). In another embodiment, the enzyme is β-ketoacyl-acyl carrier protein synthase I (KASI). In a further embodiment, the enzyme is enoyl-acyl carrier protein reductase (ENR). The level of activity can be reduced by reducing expression of the enzyme. In one embodiment, the modulation of the level of activity of an enzyme is a reduction in the activity of the enzyme. The level of activity of an enzyme can be reduced by using RNAi techniques described herein in which the enzyme is the target for the RNAi. Alternatively, the level of activity of an enzyme can be reduced using VIGS techniques as described herein in which at least a partial fragment of the target gene is used.

[0055] In another embodiment, a method involves the manipulation of transcription factors which can regulate an enzyme involved in fatty acid biosynthesis. In one embodiment, the transcription factor is a cotton WRDL protein. In another embodiment the cotton WRIL protein is a GhWRIL protein or a GrWRIL protein. In one embodiment, the manipulation of the transcription factor is a reduction in the expression. In one embodiment, the expression of the transcription factor can be reduced by using RNAi techniques described herein in which the transcription factor mRNA is the target for the RNAi. Alternatively, the level of activity of the transcription factor can be reduced using VIGS techniques as described herein in which at least a partial fragment of the target transcription factor gene is used.

[0056] The practice of the present invention employs, unless otherwise indicated, conventional techniques of chemistry, molecular biology, microbiology, recombinant DNA, genetics, immunology, cell biology, cell culture and transgenic biology, which are within the skill of the art. See, e.g., Maniatis et al, 1982, Molecular Cloning (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York); Sambrook et al, 1989, Molecular Cloning, 2nd Ed. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York); Sambrook and Russell, 2001, Molecular Cloning, 3rd Ed. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York); Ausubel et al, 1992), Current Protoco in Molecular Biology (John Wiley & Sons, including periodic updates); Glover, 1985, DNA Cloning (ERL Press, Oxford); Russell, 1984, Molecular biology of plants: a laboratory course manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.); Anand, Techniques for the Analysis of Complex Genomes, (Academic Press, New York, 1992); Guthrie and Fink, Guide to Yeast Genetics and Molecular Biology (Academic Press, New York, 1991); Harlow and Lane, 1988, Antibodies, (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York); Nucleic Acid Hybridization (B. D. Hames & S. J. Higgins eds. 1984); Transcription And Translation (B. D. Hames & S. J. Higgins eds. 1984); Culture Of Animal Cells (R. I. Freshney, Alan R. Liss, Inc., 1987); Immobilized Cells And Enzymes (IRL Press, 1986); B. Perbal, A Practical Guide To Molecular Cloning (1984); the treatise, Methods In Enzymology (Academic Press, Inc., N.Y.); Methods In Enzymology, Vols. 154 and 155 (Wu et al. eds.), Immunochemical Methods In Cell And Molecular Biology (Mayer and Walker, eds., Academic Press, London, 1987); Handbook Of Experimental Immunology, Volumes I-IV (D. M. Weir and C. C. Blackwell, eds., 1986); Riott, Essential Immunology, 6th Edition, Blackwell Scientific Publications, Oxford, 1988; Fire et al., RNA Interference Technology: From Basic Science to Drug Development, Cambridge University Press, Cambridge, 2005; Schepers, RNA Interference in Practice, Wiley-VCH, 2005; Engelke, RNA Interference (RNAi): The Nuts & Bolts of siRNA Technology, ON A Press, 2003; Gott, RNA Interference, Editing, and Modification: Methods and Protocols (Methods in Molecular Biology), Human Press, Totowa, NJ, 2004; Sohail, Gene Silencing by RNA Interference: Technology and Application, CRC, 2004.

EXAMPLES

[0057] The present invention is described by reference to the following Examples, which is offered by way of illustration and is not intended to limit the invention in any manner. Standard techniques well known in the art or the techniques specifically described below were utilized.

EXAMPLE 1

Materials and Methods

[0058] Cotton seedlings: Cotton seeds were amplified and germinated in a greenhouse. Four to 14 day old seedlings carrying 2-3 true leaves were used for VIGS assays. Younger seedlings with only cotyledons can also be used for VIGS assays.

[0059] Synthetic TRV RNAI expression vector and Synthetic TRV RNA2 expression vector: See International publication No. WO 2010/144058.

[0060] Gene cloning and VIGS vector cloning: Candidate genes were amplified by PCR from cDNA products of Gossypium hirsutum leaf samples, and cloned into the Xbal and BamHl sites of the synthetic vector psTRV2001. The primers used in cloning the genes are set forth in Table 1, which also includes reference to the sequence of the cloned gene. TABLE 1

Gene Primers and Gene Sequences

[0061] Agrobacterium infiltration: Synthetic psTRV vectors and their derivatives were introduced into Agrobacterium strain AGL1 by electroporation. A 3 ml culture was grown for 24 hr at 28° C in 50 mg/L kanamycin and 25 mg/L rifampicin. On the following day, the culture was inoculated into LB medium containing 50 mg/L kanamycin, 10 rtiM 2-(N- morpholino)ethanesulfonic acid (MES) and 20μΜ acetosyringone and grown overnight in a 28° C shaker. Agrobacterial cells were collected by centrifugation and resuspended in MMA solution (10 mM MES, 10 mM MgCl₂, 200 μΜ acetosyringone) to a final OD₆₀₀ of 1.5. The agrobacterial suspension was left at room temperature for 3-4 hr without shaking. Before infiltration, Agrobacterium culture containing the pTRVl/psTRVl or pTRV2/psTRV2 vectors was mixed in a 1 : 1 ratio. Cotton plants were infiltrated with cultures either by syringe infiltration or by vacuum infiltration. For syringe infiltration, agrobacterial-inocula were delivered into the underside of two or three youngest fully-expanded leaf using a 1 ml needleless syringe. For vacuum infiltration, whole plants were submerged into agrobacterial-inocula and subjected to 80-90 kPa vacuum for 5 min, and then quickly releasing the vacuum, letting the inoculum rapidly enter plant tissues. All data described below were obtained by vacuum infiltration. However, syringe infiltration can also be used, but it is more time costly than vacuum infiltration. The silencing effect obtained with vacuum infiltration is better than that obtained with syringe infiltration. After infiltration, excess agrobacterial cell suspension was used to drench the root system of infiltrated plants. Infiltrated plants were grown in a growth chamber at 25° C with 16 hr light/8 hr dark photoperiod cycle. The same method was also used in experiments testing VIGS in putative host plants.

[0062] Fatty Acid Analysis: Total lipid was extracted from 100 mg fresh cotton leaves or seeds as previously described (Ye et al., 2009). The outer seed coat was removed from dried cotton seeds. The remaining part was ground to fine powder and the lipids were extracted with hexane 3 times. The combined supernatant was transferred to a glass vial and the hexane was evaporated with a flow of dry nitrogen gas at 50 C. The weight of the raw oil was determined and the oil content was recorded as the ratio of raw oil to dried endosperm weight.

[0063] About lOmg of lipid was transmethylated with 3N methanolic-HCl (SIGMA, MO, USA) plus 400 pL 2,2, Dimethoxypropane (SIGMA, MO, USA). The resultant FAMEs were separated by GC and detected using GC Agilent 6890 (Agilent, CA, USA) employing helium as the carrier gas and DB-23 columns for components separation. The GC analysis was performed at 140°C for 50 sec and 30°C min^~' ramp to 240°C, and the final temperature was maintained for 50 sec. Peaks were identified based on their retention times compared with a FAME reference mixture (SIGMA, MO, USA). The fatty acid composition value included in the analyses was calculated based on the peak area percentage of total fatty acids in three biological replicates. The data were presented as mean ± standard deviation.

[0064] RNA Extraction and Analysis: 100 mg leaf tissues or seeds were ground to fine powder in liquid N₂ and extracted with plant RNA purification reagent (Invitrogen, CA USA). RNA concentration was measured by Nanodrop (Thermo, DE, USA). M-MLV reverse transcriptase (Promega, WI, USA) was used for reverse transcription reactions and cDNAs production. The cDNAs were used to amplify corresponding genes coding region. Real-time PCR was performed with Power SYBR® Green PCR Master mix (Applied Biosystems, CA, USA) and run in ABI7900HT. All samples were run in triplicates and the data was analyzed with RQ manager at a pre-set Ct value (Applied Biosystems, CA, USA). Cotton UBQ14 transcript served as an internal control for RNA samples (F: CAACGCTCCATCTTGTCCTT (SEQ ID NO:27), R: TGATCGTCTTTCCCGTA AGC (SEQ ID NO:28)). Ct values included in the analyses were based on three biological replicates, with three technical replicates for each biological sample. Standard deviation was calculated based on the three biological replicates. EXAMPLE 2

Identification of Cotton WRIl-like Gene Coding Sequence

[0065] A putative WRIl-like gene coding sequence was firstly identified with a database searching in GenBank with the reference of Arabidopsis WRI1 protein sequence (GenBank Accession number: AAP80382). Primers were designed as F: GGCACGAGGGGGGAAGAAAA AAAA (SEQ ID NO:29), R: TAACCCGAAACATCAACCATTA (SEQ ID NO:30) and PGR were performed with the cDNA of upland cotton to clone the full length cDNA, following with vector cloning and sequencing. The nucleotide sequence for the cDNA is set forth in SEQ ID NO: 1. The deduced amino acid sequence is set forth in SEQ ID NO:2.

[0066] Another cotton WRfL protein was further identified from the EST database of Gossypium raimondii http://compbio.dfci.harvard.edu tgi plant.html. Wild cotton Gossypium raimondii is believed as one of the putative progenitor species of tetraploid cotton. The cDNA sequence for GrW JDL is set forth in SEQ ID NO:3, and the deduced amino acid sequence is set forth as SEQ ID NO:4. Protein alignment and phylogenetic analysis were performed (Figs. 1A and IB). Base on the above data, cotton WRIl-like protein (GhWRIL) shares 51.4% identity with Arabidopsis WRI1 (AtWRIl ). However, WRIL homologs from different cotton species shared 96.3% identity, which indicated the protein play a very important role on evolution of cotton species.

EXAMPLE 3

Longer Fiber Length by Knock Down the Expression of GhWRIL

[0067] We were interested in the functional analysis of the role of WRIL on cotton fiber length. To amplify the WRIL from G. hirsutwn, PCR primers (SEQ ID NOs:19 and 20) were designed to amplify a 543-bp cDNA of G. hirsutum by PCR, and the GhWRIL fragment (SEQ ID NO:l ) was inserted into the sTRV2 MCS site to give psTRV2:GhWRIL. The sequence of GhWRIL was also verified by sequencing. Cultures of Agrobacterium carrying psTRVl was mixed with cultures of Agrobacterium carrying either psTRV2:GhWRIL or vector control. The mixed culture was vacuum-infiltrated into G. hirsutum plants with 2-3 true leaves (for details see Example 1). There are no obvious phenotypes in vegetative organs of GAWR/L-silenced cotton plants, such as leaf width and pattern of trichome branching.

[0068] After cotton bolls matured and cotton fiber exposed out, bigger boll size and longer fiber length can be observed on GAWK/L-silenced cotton plants (Fig. 2). Cotton fiber was 29.2 mm in GhWRIL-silenced cotton plants while 27.3 mm in sTRV vector treated control cotton piants (Fig. 3). The seeds of GhWRIL-silenced cotton plants showed slimmer phenotypes compared with control seeds (Fig. 2). Furthermore, both seed weight and oil content reduced in GAWR/L-silenced cotton seed (Fig. 4). Fatty acid profile was also found to change to have lower oleate (18:1) and higher amount of linoleate (Fig. 5).

[0069] We next tried to identified the putative down-stream genes which are regulated by transcription factors WRIL in cotton seed. We performed quantitative realtime PCR, using total RN A extracted , from seeds of treated plants to confirm the VIGS of the WRIL gene at the molecular and the results are shown in Fig. 6. WRIL RNA accumulation in the seeds of GhWRIL -silenced plant was much lower than that of plants infected with the empty sTRV vector and there is 22 % of GhWRIL RNA was left in G W&TL-silenced plants. Among all fatty acid biosynthesis enzymes, ACCase controls a major point of the pathway and catalyzes the rate limited step for lipid biosynthesis. ACCase catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which is the first committed step in fatty acid bisynthesis. In the GhWRIL-silenced seeds, homo-Accasel was dramatic reduced to only 12% of control seeds. Enoyl-acyl carrier protein reductase (ENR) and ketoacyl-acyl carrier protein synthase (KASI) are two key genes among the obviously downregulated genes. KASI encodes the main enzyme for fatty acid condensation reaction and ENR is the last enzyme in the fatty acid elongation cycle. By contrast, there were no obvious changes of transcript levels for other FAS genes like those encoding ketoacyl-ACP synthases Π (KASI ) and pyruvate dehydrogenase (PDH1) (Fig. 6).

[0070] These results indicated GhWRIL may function to bind promoters of these three genes (ACCasel, KASI and ENR) to regulate their expression. When we down-regulated the activity of GhWRIL, the expression of these three key genes for fatty acid biosynthesis were downregulated and the carbon flow distribution to oil was inhibited and on the other hand, the sucrose related final product cotton fiber was enhanced.

EXAMPLE 4

Silencing of ACCasel and KASI, KASII Leads to Vegetative Growth Defects

[0071] Since we identified target genes regulated by GhWRIL, we further tested whether we can enhance fiber length by manipulating of these genes directly.

[0072] Cotton ACCASE1 and KASI, KASII genes were identified as the method for GhWRIL and gene fragments were inserted into psTRV2 vectors (Fig. 7 and Figs. 8A and 8B). A partial coding sequence for GhACCasel is set forth in SEQ ID NO:9, and the deduced amino acid sequence is set forth in SEQ ID NO: 10. A coding sequence for GhKASI is set forth in SEQ ID NO: 12, and the deduced amino acid sequence is set forth in SEQ ID NO:13. A coding sequence for GhKASII is set forth in SEQ ID NO: 15, and the deduced amino acid sequence is set forth in SEQ ID NO: 16. Cultures of Agrobacterium carrying psTRVl was mixed with cultures of Agrobacterium carrying either psTRV2:GhACCasel, GhKASI, GhKASII or vector control. The mixed culture was vacuum-infiltrated into G. hirsutum plants with 2-3 true leaves (for details see Example 1).

[0073] All of these three silenced plants showed severe phenotypes on plant vegetative growth (Figs. 9A-9D and Figs. 10A-10E).

[0074] The use of the terms "a" and "an" and "the" and similar referents in the context of describing the invention (especially in the context of the following claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context. The terms "comprising," "having," "including," and "containing" are to be construed as open-ended terms (i.e., meaning "including, but not limited to,") unless otherwise noted. Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. For example, if the range 10-15 is disclosed, then 1 1, 12, 13, and 14 are also disclosed. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g., "such as") provided herein, is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention unless otherwise claimed. No language in the specification should be construed as indicating any non-claimed element as essential to the practice of the invention.

[0075] It will be appreciated that the methods and compositions of the instant invention can be incorporated in the form of a variety of embodiments, only a few of which are disclosed herein. Embodiments of this invention are described herein, including the best mode known to the inventors for carrying out the invention. Variations of those embodiments may become apparent to those of ordinary skill in the art upon reading the foregoing description. The inventors expect skilled artisans to employ such variations as appropriate, and the inventors intend for the invention to be practiced otherwise than as specifically described herein. Accordingly, this invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Moreover, any combination of the above- described elements in all possible variations thereof is encompassed by the invention unless otherwise indicated herein or otherwise clearly contradicted by context.

BIBLIOGRAPHY

[0076] Abdullah, R. et al. (2005). Immature embryo: A useful tool for oil palm (Elaeis guineensis Jacq.) genetic transformation studies. Electronic Journal of Biotechnology [online] vol. 8, no. 1 [April 15, 2005). Available from: http colon // www dot ejbiotechnology dot inf o/content vol8/issue 1/fulV 1/index.html.

[0077] Baulcombe, D. (2004). R A silencing in plants. Nature 431:356-363.

[0078] Brigneti, G. et al. (2004). Virus-induced gene silencing in Solanum species. Plant J

39:264-272.

[0079] Burch-Smith, T.M. et al. (2004). Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant J 39:734-746.

[0080] Cernac, A. and Benning. C. (2004). WRINKLED 1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis. Plant J 40:575- 585.

[0081] Chiu, W. et al. (1996). Engineered GFP as a vital reporter in plants. Current Biology 6:325-330.

[0082] Chowdhury, M.K.U. et al. (1997). Evaluation of five promoters for use in transformation of oil palm (Elaeis guineensis Jacq.) Plant Cell Reports 16:277-281.

[0083] Christensen, A.H. and Quail, P.H. (1989). Sequence analysis and transcriptional regulation by heat shock of polyubiquitin transcripts from maize. Plant Mol Biol 12:619-632.

[0084] Christensen, A.H. et al. (1992). Maize polyubiquitin genes: structure, thermal perturbation of expression and transcript splicing, and promoter activity following transfer to protoplasts by electroporation. Plant Mol Biol 18:675-689.

[0085] De Wet, J.R. et al. (1987). Firefly luciferase gene: structure and expression in mammalian cells. Mol Cell Biol 7:725-737.

[0086] Goff, S.A. et al. (1990). Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues. EMBO J 9:2517-2522.

[0087] Jefferson, R.A. et al. (1991). Plant Molecular Biology Manual, ed. Gelvin et al., Kluwer Academic Publishers, pp.1-33.

[0088] Jiang, Y. et al. (2012), Guo W, Zhu H, Ruan YL, Zhang T: Overexpression of GhSusAl increases plant biomass and improves cotton fiber yield and quality. Plant Biotechnol J 10:301-312.

[0089] Kain, S.R. et al. (1995). Green fluorescent protein as a reporter of gene expression and protein localization. Biotechniques 19:650-655.

[0090] Last, D. I. et al. (1991). pEmu: an improved promoter for gene expression in cereal cells. TheorAppl Genet 81:581-588.

[0091] Lee, J. et al. (2010). Xyloglucan endotransglycosylase hydrolase genes in cotton and their role in fiber elongation. Planta 232: 1191 - 1205.

[0092] Li, X.B. et al. (2005). The cotton ACTIN1 gene is functionally expressed in fibers and participates in fiber elongation. Plant Cell 17:859-875.

[0093] Masli, D.I.A. et al. (2009). Transformation of oil palm using Agrobacterium tumefaciens. J Oil Palm Res 21:643-652.

[0094] McElroy, D. et al. (1990). Isolation of an efficient actin promoter for use in rice transformation. Plant Cell 2: 163-171. [0095] Odell, J. T. et al. (1985). Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature 313:810-812.

[0096] Omidvar, V. et al. (2008). A transient assay to evaluate the expression of polyhydroxybutyrate genes regulated by oil palm mesocarp-specific promoter. Plant Cell Rep 27: 1451-1459.

[0097] Parveez, G.K.A. et al. (2000). Transgenic oil palm: production and projection. Biochemical Society Transactions 28:969-972.

[0098] Parveez, G.K.A. (2008). Biolistic mediated production of transgenic oil palm. Methods Mol Biol 477:301-320.

[0099] Popluechai, S., et al. (2011). Jatropha curcas oil body proteasome and oleosins: L-form Jc01e3 as a potential phylogenetic marker. Plant Physiol Biochem 49: 352-356.

[0100] Qu, J. et al. (2012). Development of marker-free transgenic Jatropha plants with increased levels of seed oleic acid. Biotechnol Biofuels 5:10.

[0101] Ruan, Y.L. et al. (2003). Suppression of sucrose synthase gene expression represses cotton fiber cell initiation, elongation, and seed development. Plant Cell 15:952-964.

[0102] Ruiz, M.T. et al. (1998). Initiation and maintenance of virus-induced gene silencing. Plant Cell 10:937-946.

[0103] Seagull, R.W. (1990). The effects of microtubule and microfilament disrupting agents on crytoskeletal arrays and wall deposition in developing cotton fibers. Protoplasma 159:44-59.

[0104] Song, P. et al. (2000). Expression of two tissue-specific promoters in transgenic cotton plants. J Cotton Sci 4:217-223.

[0105] Sunilkumar, G. et al. (2002). Cotton alpha-globulin promoter: isolation and functional characterization in transgenic cotton, Arabidopsis, and tobacco. Transgenic Res 11:347-359.

[0106] Velten, J. et al. (1984). Isolation of a dual plant promoter fragment from the Ti plasmid of Agrobacterium tumefaciens. EMBO J 3:2723-2730.

[0107] Wang, H.Y. et al. (2009). Down-regulation of GhADFl gene expression affects cotton fibre properties. Plant Biotechnol J 7 : 13 -23.

[0108] Wang, J. et al. (2010). Overexpression of a profilin (GhPF 2) promotes the progression of developmental phases in cotton fibers. Plant Cell Physiol 51: 1276-1290.

[0109] Ye, J. et al. (2009). Rapid analysis of Jatropha curcas gene functions by virus-induced gene silencing. Plant Biotechnol J 7:964-976.

[0110] Ye, J. et al. (2010). Virus induced gene silencing (VIGS) for functional analysis of genes in cotton. International publication No. WO 2010/144058.

[0111] Zuo, J. et al. (2001). Chemical-regulated, site-specific DNA excision in transgenic plants. Nat Biotechnol 19:157-161.

Claims

WHAT IS CLAIMED IS:

L An isolated nucleic acid encoding a protein comprising the amino acid sequence set forth in SEQ ED NO:2.

2. The isolated nucleic acid of claim 1 which comprises the nucleotide sequence set forth in SEQ ED NO-.l, nucleotides 25-1338 of SEQ ED NO:l or nucleotides 25-1341 of SEQ ID NO: l.

3. An isolated nucleic acid encoding a protein comprising the amino acid sequence set forth in SEQ ID NO:4.

4. The isolated nucleic acid of claim 3 which comprises the nucleotide sequence set forth in SEQ ID NO:3, nucleotides 32-1345 of SEQ ID NO:3 or nucleotides 32-1348 of SEQ ED NO:3.

5. The isolated nucleic acid of any one of claims 1-4 which further comprises a plant operable promoter operably linked to the nucleic acid.

6. The isolated nucleic acid of claim 5, wherein the promoter is a seed specific promoter.

7. A transgenic plant cell, plant or plant seed comprising the isolated nucleic acid of any one of claims 1-6 stably integrated into its genome.

8. The transgenic plant cell, plant or plant seed of claim 7, wherein the plant is cotton.

9. A method of increasing fiber length of cotton comprising modulating the activity of an enzyme in the fatty acid biosynthesis pathway in a cotton plant to cause an increase in fiber length.

10. The method of claim 9, wherein the modulation is reducing the activity of the enzyme.

11. The method of claim 9, wherein the enzyme is acetyl-CoA carboxylase (ACCase), β- ketoacyl-acyl carrier protein synthase I (KASI) or enoyl-acyl carrier protein reductase (ENR).

12. The method of claim 10, wherein the enzyme is acetyl-CoA carboxylase (ACCase), β- ketoacyl-acyl carrier protein synthase I (KASI) or enoyl-acyl carrier protein reductase (ENR).

13. The method of claim 12, wherein the reduction in activity of the enzyme is mediated by RNAi or VIGS.

14. The method of claim 12, wherein the reduction in activity of the enzyme is mediated by reducing the activity of a transcription factor that modulates the expression of the enzyme.

15. The method of claim 14, wherein the transcription factor is cotton WRIL.

16. The method of claim 15, wherein the reduction in activity of the transcription factor is mediated by RNAi or VIGS.

17. The method of any one of claims 9, 10, 11, 12, 14 or 15, wherein the activity of the enzyme is modulated in seeds of the cotton plant.

18. The method of claim 17, wherein the cotton plant is a transgenic cotton plant.

19. The method of claim 18, wherein the reduction in activity of the enzyme or the reduction in that activity of the transcription factor is mediated by RNAi.

20. The method of any one of claim 9-19, wherein the fiber length is increased by at least 4% longer, preferably at least 5%, more preferably at least 6% and most preferably at least 7% compared to a cotton plant in which the activity of an enzyme in the fatty acid biosynthesis pathway is not modulated.