WO2013116639A1 - Campylobacter immunogenic compositions and uses thereof - Google Patents

Campylobacter immunogenic compositions and uses thereof Download PDF

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Publication number
WO2013116639A1
WO2013116639A1 PCT/US2013/024332 US2013024332W WO2013116639A1 WO 2013116639 A1 WO2013116639 A1 WO 2013116639A1 US 2013024332 W US2013024332 W US 2013024332W WO 2013116639 A1 WO2013116639 A1 WO 2013116639A1
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seq
protein
immunogenic composition
proteins
campylobacter
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PCT/US2013/024332
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French (fr)
Inventor
Lynn A. Joens
Bibiana Law
Alexandra Armstrong
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Arizona Board Of Regents On Behalf Of The University Of Arizona
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Application filed by Arizona Board Of Regents On Behalf Of The University Of Arizona filed Critical Arizona Board Of Regents On Behalf Of The University Of Arizona
Priority to BR112014018732A priority Critical patent/BR112014018732A8/en
Priority to US14/375,365 priority patent/US9328148B2/en
Priority to EP13703508.5A priority patent/EP2809347A1/en
Priority to CN201380012681.7A priority patent/CN104159601B/en
Publication of WO2013116639A1 publication Critical patent/WO2013116639A1/en
Priority to US15/065,979 priority patent/US10030054B2/en
Priority to US16/027,575 priority patent/US10683330B2/en
Priority to US16/893,667 priority patent/US11203618B2/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/205Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Campylobacter (G)
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/02Bacterial antigens
    • A61K39/105Delta proteobacteriales, e.g. Lawsonia; Epsilon proteobacteriales, e.g. campylobacter, helicobacter
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/04Antibacterial agents
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/74Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/51Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/52Bacterial cells; Fungal cells; Protozoal cells
    • A61K2039/522Bacterial cells; Fungal cells; Protozoal cells avirulent or attenuated
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/51Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/52Bacterial cells; Fungal cells; Protozoal cells
    • A61K2039/523Bacterial cells; Fungal cells; Protozoal cells expressing foreign proteins
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/51Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/53DNA (RNA) vaccination

Definitions

  • Campylobacteriosis is primarily a food-borne disease with the handling and consumption of poultry considered to be the most significant risk factor in transmission.
  • Infection by Campylobacter spp. is one of the leading causes of bacterial gastroenteritis, causing an estimated 1.3 million cases annually in the U.S. (Scallan et al, 2011), resulting in health care costs of $ 0.8-5.6 billion per year (Buzby et al., 1997).
  • Serious complications such as arthritis occur in an estimated 1-5% of cases (Pope et al, 2007)) and Guillain-Barre Syndrome, a form of neuromuscular paralysis, occurs at a rate of 1.0 per 1,000 patients (Altekruse and Tollefson, 2003).
  • USDA-FSIS Food Safety and Inspection Service
  • USDA-FSIS NOTICE 31-11, 6/30/1 1
  • USDA-FSIS NOTICE 31-11, 6/30/1 1
  • the present invention provides immunogenic compositions, comprising one or more expression vectors comprising:
  • the present invention provides immunogenic compositions, comprising
  • the present invention provides methods for stimulating an immune response against Campylobacter, comprising administering to a subject an effective amount of the immunogenic composition according to any embodiment of the invention to generate an immune response against Campylobacter.
  • the present invention provides methods for reducing
  • Campylobacter intestinal colonization in a subject comprising administering an amount effective of the immunogenic composition according to any embodiment of the invention to reduce Campylobacter intestinal colonization in the subject.
  • FIG. 1 is a schematic drawing of the pYA3493 plasmid. Detailed Description of the Invention
  • the present invention provides immunogenic compositions, comprising one or more expression vectors comprising:
  • the inventors have identified three putative virulence genes (Q0248, Q0588, and Cj 0998c) from C. jejuni encoding novel proteins from the outer-membrane of the bacterium.
  • the inventors have further discovered that each of the Cj0998c protein, the Q0588 protein, and the Q0248 protein are potent immunogens for stimulating an effective immune response against Campylobacter jejuni ("C. jejuni").
  • C. jejuni Campylobacter jejuni
  • two separate vaccination trials of chickens with a vector expressing the Cj0988c protein demonstrated reduced numbers of C. jejuni in birds after challenge an average of 2.5 logs CFU (geomean 3 logs) when compared to the cecal numbers of non-vaccinated control birds.
  • vaccination trials demonstrated a significant reduction (1-4 logs) (1 log with heterologous strain and 4 logs with homologous strain) of C. jejuni in cecal contents of chickens vaccinated with vectors expressing the Q0588
  • the immunogenic compositions of the invention can be used, for example for stimulating an immune response in subjects at risk of Campylobacter infection and/or colonization, including but not limited to vertebrates such as chickens, turkeys, birds, cattle, sheep, pigs, dogs, cats, and humans.
  • the one or more expression vectors encode one of the recited proteins, or antigenic fragments thereof.
  • the one or more expression vectors encode two proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: SEQ ID NO:2 and SEQ ID NO:4; SEQ ID NO:2 and SEQ ID NO:6; or SEQ ID NO:6 and SEQ ID NO:8), or antigenic fragments thereof.
  • a single expression vector may encode both proteins, or antigenic fragments thereof, or the composition may comprise two expression vectors, with each expression vector encoding one of the recited proteins, or antigenic fragments thereof.
  • the expression vector used may be the same (other than the protein coding sequence) or different.
  • the one or more expression vectors encode all three of the proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: SEQ ID NO:2, SEQ ID NO:4, and SEQ ID NO:6) , or antigenic fragments thereof.
  • a single expression vector may encode all three proteins, or antigenic fragments thereof.
  • the composition may comprise two expression vectors, with one expression vector encoding one of the recited proteins, or antigenic fragments thereof, and the other expression vector encoding two of the recited proteins, or antigenic fragments thereof.
  • the composition may comprise three expression vectors, with each expression vector encoding one of the recited proteins, or antigenic fragments thereof.
  • the multiple expression vectors used may be the same or different.
  • Non- limiting examples of expression vectors encoding the one or more recited proteins are provided herein. Based on the present disclosure, it is well within the level of those of skill in the art to prepare expression vectors according to all embodiments of the invention.
  • the Cj0998c, Q0588, and Q0248 proteins are present in highly conserved variants between different strains of C. jejuni, and thus the proteins encoded by the one or more expression vectors can be at least 80% identical or similar (residues with similar properties, i.e.: hydrophobic, hydrophilic, etc.) over the full length of the recited amino acid sequences, or antigenic fragments thereof.
  • the proteins encoded by the one or more expression vectors are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
  • the at least one polynucleotide encodes a protein selected from the group consisting of the following, or an antigenic fragment thereof:
  • NSRN SEQ ID NO : 140.
  • the at least one polynucleotide encodes a protein selected from the group consisting of SEQ ID NOS: 10-106, or an antigenic fragment thereof.
  • SEQ ID NOS, 44-82 are each Cj0998c protein homologs from other C. jejuni strains;
  • SEQ ID NOS, 83 tol06 are each Q0588 protein homologs from other C. jejuni strains;
  • SEQ ID NOS, 10 to 43 are each Q0248 protein homologs from other C. jejuni strains.
  • the expression vectors may encode "antigenic portions" of the recited protein.
  • antigenic portion is any fragment of 10 or more contiguous amino acids in the recited amino acid sequence.
  • the antigenic portion is any fragment of any of the embodiments of the invention is 15, 20, 25, 30, 40, 50, 75, 100, 125, 150, 175, 200, 225, 250, or 275 contiguous amino acids of the recited amino acid sequence.
  • the one or more isolated polynucleotides may be single or double stranded DNA, RNA, genomic DNA, or cDNA.
  • the one or more isolated polynucleotides may be any nucleic acids encoding the recited one or more proteins, or antigenic fragments thereof.
  • the one or more isolated polynucleotides are one or more of SEQ ID NO: 1 (Cj 0998c gene), SEQ ID NO: 3 (Q0588 gene), and SEQ ID NO: 5 (Q0248 gene), or portions thereof encoding antigenic portions of the recited proteins. It will be apparent to those of skill in the art, based on the teachings herein, what polynucleotide sequences will encode the recited polypeptides or antigenic fragments thereof.
  • isolated polynucleotides are those that have been removed from their normal surrounding nucleic acid sequences in the genome or in cDNA sequences. Such isolated nucleic acid sequences may comprise additional sequences useful for promoting expression and/or purification of the encoded protein, including but not limited to polyA sequences, modified Kozak sequences, and sequences encoding epitope tags, export signals, secretory signals, nuclear localization signals, and plasma membrane localization signals, as appropriate for a given use.
  • Any expression vector suitable for an intended use can be used in the immunogenic compositions of the present invention.
  • Such expression vectors can be of any type known in the art, including but not limited to plasmid and viral-based expression vectors.
  • the construction of expression vectors for use in transfecting prokaryotic cells is also well known in the art, and thus can be accomplished via standard techniques. (See, for example, Sambrook, Fritsch, and Maniatis, in: Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory Press, 1989; Gene Transfer and Expression Protocols, pp. 109-128, ed. E.J. Murray, The Humana Press Inc., Clifton, N.J.), and the Ambion 1998 Catalog (Ambion, Austin, TX).
  • the expression vector must be replicable in the host organisms either as an episome or by integration into host chromosomal DNA.
  • the expression vector comprises a plasmid.
  • the invention is intended to include other expression vectors that serve equivalent functions, such as viral vectors. Specifics of the expression vector will depend on the ultimate desired use. Designing appropriate expression vectors for an intended use is well within the level of those of skill in the art based on the teachings herein.
  • promoter includes any nucleic acid sequence sufficient to direct expression of the encoded protein(s), including inducible promoters, repressible promoters and constitutive promoters. If inducible, there are sequences present which mediate regulation of protein expression so that the polynucleotide is transcribed only when an inducer molecule is present. Such cis-active sequences for regulated expression of an associated polynucleotide in response to environmental signals are well known to the art.
  • the expression vector may comprise any other control sequences as may be suitable for an intended use.
  • control sequences need not be contiguous with the nucleic acid sequences, so long as they function to direct the expression thereof. Thus, for example, intervening untranslated yet transcribed sequences can be present between a promoter sequence and the nucleic acid sequences and the promoter sequence can still be considered "operably linked" to the coding sequence.
  • Other such control sequences include, but are not limited to, polyadenylation signals, enhancers, termination signals, and ribosome binding sites.
  • the immunogenic compositions of the present invention may further comprise any other suitable components as may be useful for a given purpose.
  • compositions may further comprise one or more expression vectors comprising at least one polynucleotide encoding a protein selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to an amino acid sequence of SEQ ID NO: 142 (Cj 1534c protein; encoded, for example, by SEQ ID NO: 141), SEQ ID NO: 108 (1656c protein; encoded, for example, by SEQ ID NO: 107), SEQ ID NO: 110 (0428 protein; encoded, for example, by SEQ ID NO: 109), SEQ ID NO: 112 (0168c protein; encoded, for example, by SEQ ID NO: 1 11), SEQ ID NO: 1 14 (0427 protein;
  • SEQ ID NO: 113 SEQ ID NO: 116 (CjOl 13 protein; encoded, for example, by SEQ ID NO: 1 15),SEQ ID NO: 1 18 (Cj0982c protein; encoded, for example, by SEQ ID NO: l 17), SEQ ID NO: 120 (Cj0921c protein; encoded, for example, by SEQ ID NO: 119), SEQ ID NO: 122 (Cj l259 protein; encoded, for example, by SEQ ID NO: 121), SEQ ID NO: 124 (Cj 1339c protein; encoded, for example, by SEQ ID NO: 123), SEQ ID NO: 126 (Cj0034c protein; encoded, for example, by SEQ ID NO: 125), SEQ ID NO: 128 (Cj0404 protein; encoded, for example, by SEQ ID NO: 127), SEQ ID NO: 130 (Cj0365c protein; encoded, for example, by SEQ ID NO: 129),
  • SEQ ID NO: 132 Cj0755 protein; encoded, for example, by SEQ ID NO: 131
  • SEQ ID NO: 134 Cj0420 protein; encoded, for example, by SEQ ID NO: 133
  • antigenic fragments thereof Cj0755 protein; encoded, for example, by SEQ ID NO: 131
  • SEQ ID NO: 134 Cj0420 protein; encoded, for example, by SEQ ID NO: 133
  • the one or more expression vectors may be the same or different one or more expression vectors that comprise the at least one polynucleotide encoding SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Q0588 protein), SEQ ID NO:6 (Q0248 protein), or fragments thereof. All embodiments of the one or more expression vectors disclosed above apply equally for these additional components.
  • the one or more expression vectors may be 1, 2, 3, or 4 additional vectors that encode SEQ ID NO: 142 (Cj 1534c protein), SEQ ID NO: 108 (1656c protein), SEQ ID NO: l 10 (0428 protein), SEQ ID NO: 112 (0168c protein), and SEQ ID NO: 1 14 (0427 protein), or antigenic fragments thereof.
  • SEQ ID NO: 142 Cj 1534c protein
  • SEQ ID NO: 108 (1656c protein
  • SEQ ID NO: l 10 0428 protein
  • SEQ ID NO: 112 (0168c protein
  • SEQ ID NO: 1 14 0427 protein
  • the optional protein immunogens are present in highly conserved variants between different strains of Campylobacter jejuni, and thus the proteins encoded by the one or more expression vectors can be at least 80% identical over the full length of the recited amino acid sequences, or antigenic fragments thereof.
  • the proteins encoded by the one or more expression vectors are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
  • the immunogenic compositions of the present invention may be used for inducing an immune response by administration as naked DNA using standard methods, such as by parenteral delivery.
  • the expression vectors may comprise viral expression vectors, including but not limited to a recombinant adeno-associated virus (AAV) gene delivery vector.
  • AAV adeno-associated virus
  • the expression vector is bounded on the 5' and 3' end by functional AAV inverted terminal repeat (ITR) sequences.
  • ITR inverted terminal repeat
  • Recombinant AAV (rAAV) virions encapsidating the expression vectors of the invention may be produced using standard methodology.
  • an AAV expression vector according to the invention is introduced into a producer cell, followed by introduction of an AAV helper construct, where the helper construct includes AAV coding regions capable of being expressed in the producer cell and which complement AAV helper functions absent in the AAV vector.
  • the helper construct includes AAV coding regions capable of being expressed in the producer cell and which complement AAV helper functions absent in the AAV vector.
  • helper virus and/or additional vectors into the producer cell, wherein the helper virus and/or additional vectors provide accessory functions capable of supporting efficient rAAV virus production.
  • the producer cells are then cultured to produce rAAV. These steps are carried out using standard methodology.
  • Replication-defective AAV virions encapsulating the recombinant AAV vectors of the instant invention are made by standard techniques known in the art using AAV packaging cells and packaging technology.
  • the one or more expression vectors are present in a carrier cell, including but not limited to an avirulent, non-Campylobacter bacterial carrier cell.
  • Live bacterial vaccine "vectors" i.e.: bacterial cells comprising immunogenic compositions
  • Recombinant attenuated bacterial cell delivered vaccines have been adapted to stably express protective antigens at high levels. They are capable of stimulating strong primary humoral, mucosal and lasting memory immune responses without significant tissue damage or other performance reducing effects.
  • the bacterial carrier cell is an avirulent bacterial cell selected from the group consisting of attenuated L.
  • Shigella spp. attenuated M. bovis BCG, attenuated Y. enterocolitica, attenuated B.
  • Attenuated means that the bacteria is reduced in causing disease symptoms in a host it is delivered to compared to a non-attenuated bacterial vector.
  • Suitable attenuated bacteria can be any species or strain that is or can be sufficiently attenuated to allow for its non- pathological administration to humans and/or animals in live and/or dead form.
  • an attenuated Salmonella species is used.
  • exemplary embodiments are used.
  • Salmonella that can be used include, but are not limited to Salmonella enterica strains selected from the group consisting of S. Typhimurium, S. Enteriditis, S. Heidelberg,
  • RASVs Recombinant attenuated Salmonella vaccines
  • the RASV comprises attenuating mutations in the pmi (mannose-6-phosphate isomerase), wr (ferric uptake regulator) and crp (cAMP regulatory protein) genes (see, for example, (Li et al, PNAS 106:592-597 2009, Curtiss et al, 2009) and US 8, 133,493.
  • the RASV comprises the ⁇ 9992 vector disclosed in US 8, 133,493.
  • the RASV is one that is commercially available, such as Megan®Vac 1 (Lohman Animal Health, US).
  • Attenuated bacterial cells can be transfected with the one or more expression vectors using standard techniques in the art.
  • the present invention provides an immunogenic composition, comprising (a) one or more isolated proteins selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Q0588 protein), and SEQ ID NO:6 (Q0248 protein), or antigenic portions thereof; and
  • compositions of the second aspect of the invention can be used, for example for stimulating an immune response in subjects at risk of C. jejuni infection or colonization, including but not limited to vertebrates such as chickens, turkeys, cattle, sheep, pigs, and humans.
  • the immunogenic composition comprises one of the recited proteins, or antigenic fragments thereof.
  • the immunogenic composition comprises two of the proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: SEQ ID NO:2 and SEQ ID NO:4; SEQ ID NO:2 and SEQ ID NO:6; or SEQ ID NO:6 and SEQ ID NO:8), or antigenic fragments thereof.
  • the immunogenic composition comprises all three of the proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: (i.e.: SEQ ID NO:2, SEQ ID NO:4, and SEQ ID NO:6) , or antigenic fragments thereof.
  • the Cj0998c, Q0588, and Q0248 proteins are present in highly conserved variants between different strains of C. jejuni, and thus the proteins can be at least 80% identical over the full length of the recited amino acid sequences, or antigenic fragments thereof.
  • the proteins are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
  • the at least one protein is selected from the group consisting of the following, or an antigenic fragment thereof:
  • XI is absent or is NKGVISAK (SEQ ID NO: 135);
  • NSRN SEQ ID NO: 140.
  • the at least one polynucleotide encodes a protein selected from the group consisting of SEQ ID NOS: 10-106, or an antigenic fragment thereof.
  • SEQ ID NOS, 44-82 are each Cj0998c protein homologs from other C. jejuni strains;
  • SEQ ID NOS, 83-106 are each Q0588 protein homologs from other C. jejuni strains;
  • SEQ ID NOS, 10-43 are each Q0248 protein homologs from other C. jejuni strains.
  • the immunogenic composition of any embodiment of this second aspect of the invention may comprise "antigenic portions" of the recited proteins.
  • antigenic portion is any fragment of 10 or more contiguous amino acids in the recited amino acid sequence.
  • the antigenic portion is any fragment of 15, 20, 25, 30, 40, 50, 75, 100, 125, 150, 175, 200, 225, 250, or 275 contiguous amino acids of the recited amino acid sequence.
  • the immunogenic compositions of the second aspect of the invention may comprise proteins modified in any suitable way.
  • the protein component(s) of the composition are treated to extend in vivo half-life by, for example, such as by PEGylation, HESylation, PASylation, or glycosylation.
  • the proteins may also be glycosylated as deemed appropriate, using standard techniques in the art.
  • those protein components in the immunogenic compositions that possess N-glycosylation sequences may be glycosylated, to help further stimulate the immune response.
  • compositions of the second aspect of the invention may further comprise any other suitable components as may be useful for a given purpose.
  • the compositions may further comprise one or more additional proteins selected from the group consisting of proteins comprising an amino acid sequence at least 80% identical to SEQ ID NO: 142 (Cj 1534c protein), SEQ ID NO: 108 (Cj 1656c protein), SEQ ID NO: 1 10 (Cj0428 protein), SEQ ID NO: 112 (Cj0168c protein), SEQ ID NO: 114 (Cj0427 protein), SEQ ID NO: 1 16 (CjOl 13 protein),SEQ ID NO: 1 18 (Cj0982c protein), SEQ ID NO: 120 (Cj0921c protein), SEQ ID NO: 122 (Cj l259 protein), SEQ ID NO: 124 (Cj 1339c protein), SEQ ID NO: 126 (Cj0034c protein), SEQ ID NO: 128 (Cj0404 protein), SEQ ID NO: 130 (Cj0
  • the optional protein immunogens are present in highly conserved variants between different strains of Campylobacter jejuni, and thus the proteins can be at least 80% identical over the full length of the recited amino acid sequences, or antigenic fragments thereof.
  • the proteins encoded by the one or more expression vectors are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
  • the immunogenic compositions of the second aspect of the invention may further comprise a C jejuni pilus protein as described in WO 2008/008092, incorporated by reference herein in its entirety.
  • the pilus protein described in WO 2008/008092 was shown to stimulate an immune response against C. jejuni, and thus it is suitable for inclusion in the immunogenic compositions of the second aspect of the present invention. Methods for isolating the C. jejuni pilus protein are described in WO 2008/008092.
  • the immunogenic compositions of the invention may comprise any suitable amount/dosage of the composition as determined most appropriate.
  • the immunogenic composition comprises about 10 6 - 10 10 avirulent bacterial cells per dose.
  • the composition may comprise about 0.1 ug/kg-100 mg/kg body weight of the proteins;
  • it may be 0.5 ug/kg to 50 mg/kg; 1 ug/kg to 25 mg/kg, or 5 ug/kg to 10 mg/kg body weight of the proteins.
  • the immunogenic compositions of the present invention can be formulated by any of the means known in the art.
  • the immunogenic compositions are typically formulated as a pharmaceutical composition, such as those disclosed above, and can be formulated for administration via any suitable route, including orally, as injectables, parentally, by inhalation spray, intranasally, rectally, mucosally, topically, or for
  • parenteral as used herein includes, subcutaneous, intravenous, intra-arterial, intramuscular, intrasternal, intratendinous, intraspinal, intracranial, intrathoracic, infusion techniques or intraperitoneally. Solid forms suitable for solution in, or suspension in, liquid prior to injection or other administration may also be prepared.
  • the compositions may also, for example, be emulsified, or the encapsulated in liposomes or microparticles.
  • the immunogenic compositions may also be present in and/or expressed by transgenic plants.
  • the immunogenic compositions according to the present invention may further comprise any suitable adjuvant.
  • Immunological adjuvants in general comprise substances that boost the immune response of the host in a nonspecific manner.
  • a number of different adjuvants are known in the art. Examples of adjuvants are Freunds Complete and Incomplete adjuvant, vitamin E, non-ionic block polymers and polyamines such as dextransulphate, carbopol and pyran, oligopeptide, emulsified paraffin-EmulsigenTM (MVP Labs, Ralston, Nebr.), L80 adjuvant containing aluminum hydroxide (Reheis, N.J.), Quil ATM (Superphos); surface active substances such as SpanTM, TweenTM, hexadecylamine, lysolecitin, methoxyhexadecylglycerol and saponins; peptides such as muramyldipeptides, dimethylglycine, and tuftsin; immune-sti
  • Bayol or Markol vegetable oils or emulsions thereof, aluminum hydroxide; N-acetyl- muramyl-L-threonyl-D-isoglutamine (thr-MDP); N-acetyl-nor-muramyl-L-alanyl-D- isoglutamine (CGP 1 1637, referred to as nor-MDP); N-acetylmuramyl-L-alanyl-D- isoglutaminyl-L-alanine-2-(l'-2'-dipalmitoyl-s- n-glycero-3hydroxyphosphoryloxy)- ethylamine (CGP 19835A, referred to as MTP-PE); and RIBI, which contains three components extracted from bacteria: monophosphoryl lipid A, trehalose dimycolate and cell wall skeleton (MPL+TDM+CWS) in a 2% squalene/Tween 80 emulsion.
  • the immunogenic compositions may further comprise an adjuvant, including but not limited to such as the nontoxic cholera toxin B subunit (Sigma Chemical Company, St. Louis, Mo.) and organometallopolymers including linear, branched or cross-linked silicones which are bonded at the ends or along the length of the polymers to the particle or its core.
  • an adjuvant including but not limited to such as the nontoxic cholera toxin B subunit (Sigma Chemical Company, St. Louis, Mo.) and organometallopolymers including linear, branched or cross-linked silicones which are bonded at the ends or along the length of the polymers to the particle or its core.
  • organometallopolymers including linear, branched or cross-linked silicones which are bonded at the ends or along the length of the polymers to the particle or its core.
  • Such polysiloxanes can vary in molecular weight from about 400 up to about 1,000,000 daltons; the preferred length range is from about 700 to about 60,000 daltons.
  • Suitable functionalized silicones include (trialkoxysilyl) alkyl-terminated polydialkylsiloxanes and trialkoxysilyl terminated polydialkylsiloxanes, for example, 3- (triethyoxysilyl) propyl terminated polydimethylsiloxane. See U.S. Pat. No. 5,571,531, incorporated by reference herein. Phosphazene polyelectrolytes can also be incorporated into immunogenic compositions for mucosal administration (See e.g., U.S. Pat. No. 5,562,909).
  • the immunogenic compositions according to the present invention may also comprise preservatives such as sodium azide, thimersol, gentamicin, neomycin, and polymyxin.
  • the immunogenic compositions may be mixed with excipients or carriers which are pharmaceutically acceptable and compatible with the protein immunogen(s) to be used.
  • Suitable excipients include, but are not limited to, water, saline, dextrose, glycerol, ethanol, or the like and combinations thereof.
  • Such an immunogenic composition can easily be prepared by admixing the protein with a pharmaceutically acceptable carrier.
  • pharmaceutically acceptable carrier is understood to be a compound that does not adversely affect the health of the animal to be vaccinated, at least not to the extent that the adverse effect is worse than the effects seen when the animal is not vaccinated.
  • a pharmaceutically acceptable carrier can be e.g. sterile water or a sterile physiological salt solution. In a more complex form, the carrier can e.g. be a buffer.
  • the immunogenic composition may further comprises stabilizers, e.g. to protect degradation-prone components from being degraded, to enhance the shelf-life of the composition, or to improve freeze-drying efficiency.
  • stabilizers include, without limitation, SPGA, skimmed milk, gelatin, bovine or other serum albumin, carbohydrates e.g. sorbitol, mannitol, trehalose, starch, sucrose, dextran or glucose, proteins such as albumin or casein or degradation products thereof, and buffers, such as alkali metal phosphates.
  • an albumin is used, it is desirably from the same species as the animal (or human) to which the immunogenic composition containing it will be administered. Freeze-drying is an efficient method for conservation.
  • Freeze-dried material can be stored stable for many years. Storage temperatures for freeze-dried material may well be above zero degrees, without being detrimental to the material. Freeze-drying can be done according to all well-known standard freeze-drying procedures.
  • the immunogenic compositions of the invention may be stored in any suitable manner.
  • the immunogenic compositions could be lyophilized or otherwise stabilized and stored in food or water for delivery.
  • the immunogenic compositions are designed for administration to a non-human subject, such as chickens, turkeys, birds, sheep, pigs, cattle, dogs, or cats
  • the immunogenic composition is formulated for mucosal administration, such as by admixing of the composition with drinking water or food, or admixing for use as a spray, to mist over the animals to uptake the immunogenic composition during grooming behavior.
  • mucosal administration such as by admixing of the composition with drinking water or food, or admixing for use as a spray, to mist over the animals to uptake the immunogenic composition during grooming behavior.
  • any suitable method of administration can be used for any subject.
  • the immunogenic compositions are formulated for intraocular, intranasal, or transdermal administration.
  • the present invention provides methods for stimulating an immune response against Campylobacter, comprising administering to a subject an effective amount of the immunogenic composition according to any embodiment or combination of embodiments of the first or second aspects of the present invention to generate an immune response against Campylobacter.
  • the present invention provides methods for reducing
  • Campylobacter intestinal colonization in a subject comprising administering an amount effective of the immunogenic composition according to any embodiment or combination of embodiments of the first or second aspects of the present invention to reduce Campylobacter intestinal colonization in the subject.
  • CJ0248, CJ0588, and Cj0998c from C. jejuni encoding novel proteins from the outer- membrane of the bacterium.
  • the inventors have further discovered that each of the Cj 0998c protein, the CJ0588 protein, and the CJ0248 protein are potent immunogens for stimulating an effective immune response against Campylobacter jejuni ("C. jejuni").
  • C. jejuni Campylobacter jejuni
  • two separate vaccination trials of chickens with a vector expressing the Cj0988c protein demonstrated reduced numbers of C. jejuni in birds after challenge an average of 2.5 logs CFU (geomean 3 logs) when compared to the cecal numbers of non- vaccinated control birds.
  • vaccination trials demonstrated a significant reduction (1-4 logs) (1 log with heterologous strain and 4 logs with homologous strain) of C. jejuni in cecal contents of chickens vaccinated with vectors expressing the Q0588 protein and challenged.
  • Each of the proteins was initially isolated from an outer- membrane (OMP) extraction of a C. jejuni biofilm.
  • OMP outer- membrane
  • Campylobacteriosis is a food-borne disease primarily generally caused by C jejuni.
  • the major risk factor in acquiring the disease is the handling and consumption of poultry.
  • Campylobacter such as C. jejuni
  • the epidemiology of poultry colonization with Campylobacter such as C. jejuni is extremely complex. Birds become colonized within 14 days of hatching, spreading the infection throughout the flock by the end of the grow-out period. Strain differences, based on subtyping and/or genotyping assays, exist between and within flocks. Although some flocks remain Campylobacter-free, most flocks have 50-100% of the birds colonized by grow-out.
  • broilers i.e., chickens of either gender that will be slaughtered for meat at about 5 to 8 weeks old depending on weight
  • Campylobacter such as C. jejuni
  • this microorganism acts as normal flora in the chicken
  • undercooked chicken is a primary vehicle for transmission of Campylobacter, such as C. jejuni to humans and remains a significant public health concern.
  • the methods may be used on any suitable subject at risk of Campylobacter infection, including but not limited to vertebrates such as chickens, turkeys, birds, cattle, sheep, pigs, dogs, cats, and humans.
  • a human subject may be anyone that consumes chicken, beef, turkey, or pork.
  • a human subject may be one that works with animals (i.e.: farm workers, workers at slaughterhouses and meat processing plants, etc.) such as chickens, turkeys, cattle, sheep, and pigs.
  • the subject is a feed animal such as chickens, turkeys, cattle, sheep, and pigs.
  • the subject is a chicken.
  • the feed animal may be of any suitable age. Birds become colonized with C. jejuni within 14 days of hatching, spreading the infection throughout the flock by the end of the grow-out period.
  • the methods are initially carried out by about 14 days after hatching. It will be understood by those of skill in the art that additional booster
  • administrations may be desirable after the initial administration; such booster administrations can be carried out at any suitable time, such as by about 21 days after hatching.
  • the methods are carried out before slaughtering. However, it will be understood that the methods can be used on chickens or turkeys at any suitable time, as appropriate for a given use.
  • Campylobacteriosis is currently one of the most common bacterial food-borne diseases in humans in the U.S. and is responsible for causing an estimated 1.3 million cases annually in the U.S., often accompanied by acute gastroenteritis.
  • the infectious dose in the development of the disease is variable and ranges from 500 to 10 6 organisms. Variation in infectious dose is thought to be due to either individual susceptibility or to the relative virulence of the organism.
  • the incubation period is one to seven days with clinical symptoms including fever, severe abdominal cramps, and a watery diarrhea or a dysenterylike syndrome typical of shigellosis.
  • the disease is usually self-limiting, lasting from two to seven days but occasionally is fatal (120-360 deaths per year), mainly in infants and young adults. Serious complications such as arthritis occur in an estimated 1-5% of cases and Guillain-Barre Syndrome, a form of neuromuscular paralysis occurs at a rate of 1 per 1,000 patients.
  • Campylobacter such as C. jejuni
  • Campylobacter colonizes poultry as a commensal, that is, without producing any overt signs of disease.
  • Campylobacter such as C jejuni may colonize other feed animals as a commensal as well.
  • infected cattle may suffer from diarrhea, weight loss, and suffer from fever and increased heart rate.
  • the methods of the third and fourth aspects of the invention may be used to stimulate an immune response against or to reduce intestinal colonization of any species of
  • the methods of the third and fourth aspects of the invention are used to stimulate an immune response against or to reduce intestinal colonization of varied species of Campylobacter including but not limited to C. jejuni, C. coli, C. lari and/or C. upsaliensis.
  • methods for "stimulating an immune response” result in one or more effects (e.g., maturation, proliferation, direct- or cross-presentation of antigen, gene expression profile) on cells of either the innate or adaptive immune system.
  • the immune response may involve, effect, or be detected in innate immune cells such as, for example, dendritic cells, monocytes, macrophages, natural killer cells, and/or granulocytes (e.g., neutrophils, basophils or eosinophils).
  • the immune response may also involve, effect, or be detected in adaptive immune cells including, for example, lymphocytes (e.g., T cells and/or B cells).
  • the immune response may be observed by detecting such involvement or effects including, for example, the presence, absence, or altered (e.g., increased or decreased) expression or activity of one or more immunomodulators.
  • the immune response may stimulate a de novo or previously undetected antibody response, or enhance or suppress an existing response against the immunogen by, for example, causing an increased antibody response (e.g., amount of antibody, increased affinity/avidity) or an increased cellular response (e.g., increased number of activated T cells, and/or increased affinity/avidity of T cell receptors.
  • the immune response may be protective, meaning that the immune response may be capable of preventing initiation or continued infection of or growth within a host and/or by eliminating C. jejuni from the host.
  • elimination of an agent from the host may mean that the method is therapeutic, in that the method is used to treat a subject already infected with C. jejuni.
  • the method may comprise treating a C. jejuni infection, wherein "treating" means accomplishing one or more of the following: (a) reducing the severity of the infection; (b) limiting or preventing development of symptoms characteristic of the infection; (c) inhibiting worsening of symptoms characteristic of the infection; (d) limiting or preventing recurrence of the disorder(s) in subjects that have previously had the infection; and (e) limiting or preventing recurrence of symptoms in subjects that were previously symptomatic for the infection.
  • reducing Campylobacter intestinal colonization means reducing a level of intestinal colonization that would be observed in the subject in the absence of administering the one or more immunogenic compositions of the invention. Any level of reduction is beneficial in reducing Campylobacter transmission, for example, from poultry to a human consuming the poultry.
  • the reduction comprises at least 10% reduction in intestinal colonization compared to intestinal colonization in the absence of treatment; in various further embodiments, the intestinal colonization is reduced by at least 20%, 25%, 50%, 75%, 80%, 85%, 90%, 95%, or more compared to intestinal colonization in the absence of treatment.
  • Techniques for quantifying a level of Campylobacter intestinal colonization are well known in the art and include, but are not limited to, examining cecal or fecal levels of Campylobacter. Techniques for determining fecal contamination of
  • Campylobacter in production to quantify the level of Campylobacter organisms from a carcass rinse of feed animals, such as poultry, at various points of processing, such as after chilling are also established.
  • the one or more expression vectors are present in a carrier cell, including but not limited to a non- Campylobacter bacterial carrier cell.
  • the bacterial carrier cell is an avirulent bacterial cell selected from the group consisting of attenuated L. monocytogenes, attenuated Salmonella spp., attenuated V. cholerae, attenuated
  • Shigella spp. attenuated M. bovis BCG, attenuated Y. enterocolitica, attenuated B.
  • Salmonella that can be used include, but are not limited to Salmonella enterica strains selected from the group consisting of S. Typhimurium, S. Enteriditis, S. Heidelberg, S.Gallinarum, S. Hadar, S.
  • RASVs attenuated Salmonella vaccines
  • the RASV comprises attenuating mutations in the pmi,fur and crp genes and US 8, 133,493.
  • the RASV comprises the ⁇ 9992 vector disclosed in US 8, 133,493.
  • the RASV is one that is commercially available, such as Megan®Vacl (Lohman Animal Health, US).
  • the immunogenic compositions can be administered via any suitable route, including orally, as injectables, parentally, by inhalation spray, intranasally, rectally, mucosally, topically, or for administration by oral gavage or ad libitum feeding, for example, in drinking water, either as liquid solutions or suspension, in dosage unit formulations containing conventional pharmaceutically acceptable carriers, adjuvants, and vehicles.
  • parenteral as used herein includes, subcutaneous, intravenous, intra-arterial, intramuscular, intrasternal, intratendinous, intraspinal, intracranial, intrathoracic, infusion techniques or intraperitoneally. Solid forms suitable for solution in, or suspension in, liquid prior to injection or other administration may also be prepared.
  • the compositions may also, for example, be emulsified, or the encapsulated in liposomes.
  • the immunogenic composition when the subject is a non-human subject, such as chickens, turkeys, birds, sheep, pigs, cattle, dogs, or cats, the immunogenic composition are administered orally or mucosally, such as by admixing of the composition with drinking water or food, or admixing for use as a spray, to mist over the animals to uptake the immunogenic composition during grooming behavior.
  • the immunogenic compositions are administered orally or mucosally.
  • any suitable method of administration can be used for any subject.
  • the immunogenic compositions are administered in a manner compatible with the dosage formulation, and in such amount and manner as will be prophylactically and/or therapeutically effective, according to what is known to the art.
  • the quantity to be administered depends on the subject to be treated, the functional capacity of the subject's immune system, the degree of protection desired, and other factors. Precise amounts of the active ingredient required to be administered may depend on the judgment of the individual administering the immunogenic compositions and may be peculiar to each individual, but such a determination is within the level of those of skill in the art based on the teachings herein. In one embodiment, about 10 6 - 10 10 avirulent bacterial cells per dose can be administered.
  • a suitable dosage range may, for instance, be 0.1 ug/kg-100 mg/kg body weight; alternatively, it may be 0.5 ug/kg to 50 mg/kg; 1 ug/kg to 25 mg/kg, or 5 ug/kg to 10 mg/kg body weight.
  • the immunogenic compositions may be administered in a single dose or in multiple dosages as determined most appropriate, such as a two dose schedule, for example two to eight weeks apart; or a multiple dose schedule or in combination with other vaccines.
  • a multiple dose schedule is one in which a primary course of vaccination may include 1 to 10 or more separate doses, followed by other doses administered at subsequent time intervals as required to maintain and/or reinforce the immune response, e.g., at 1 to 4 months for a second dose, and if needed, a subsequent dose(s) after several months.
  • the DNA and protein sequence of Cj0988c are provided in SEQ ID NO: 1 and SEQ ID NO:2, respectively.
  • Salmonella Tvphimurium vector y9992 Salmonella Tvphimurium vector y9992:
  • the vector used was a Salmonella Typhimurium vector ⁇ 9992 (Curtiss et al, 2009) which contains eight mutations, with three of the mutations attenuating: the pmi, fur, and crp genes.
  • the vector plasmid pYA3493 contains the asd gene to compliment the chromosomal AasdA27 mutation and ensure that the plasmid will not be lost in vivo.
  • the plasmid also fuses the expressed product to a ⁇ -lactamase signal sequence for periplasmic secretion of the protein.
  • the plasmid has a strong promoter (-35 region of trp promoter/- 10 lac) in P trc (Fig. 1). Use of this plasmid does not confer antibiotic resistance to the Salmonella vaccine.
  • the vector that we used for the amplification of the plasmid with the inserted C. jejuni gene is E. coli ⁇ 6212. This strain is Asd- allowing amplification of the plasmid, which is then extracted and electroporated into Salmonella ⁇ 9992.
  • Gene Cj0998c expresses a hypothetical protein that is part of the outer membrane of the bacterium. Gene Cj0998c was cloned individually into plasmid pYA3493 and expressed from the Salmonella vector ⁇ 9992.
  • the Salmonella strain ( ⁇ 9992) used as the vector has three different mutations which results in its attenuation.
  • the strain is safe and immunogenic and acts as a phenotypically wild-type strain at the time of immunization but becomes attenuated after colonization of host tissues.
  • the plasmid contains the asd gene which provides a marker for laboratory differentiation using media not containing DAP to grow plasmid-containing strains. Since this gene is required for the survival of the vector without DAP, the plasmid is maintained in the vector during in vivo colonization.
  • Gene Cj0998c was cloned into Salmonella ⁇ 9992. Essentially, primers to each gene were designed and the gene amplified using PCR.
  • Each gene product was inserted into plasmid pYA3493 (asd+), cloned into E. coli ⁇ 6212 (asd-) and cultured for amplification. Following growth, the plasmid was extracted from the E. coli strain, cloned into the Salmonella Typhimurium vector, and the transformants plated on LB media minus DAP, cultured at 37°C on LB agar, harvested, and stored frozen at -80°C.
  • the Salmonella vector expressing the Cj0998c protein and the Salmonella empty vector were grown in Luria Bertani (LB) broth supplemented with 0.1% glucose, 0.05% mannose, and 0.1% arabinose for 24 h at 37°C with shaking. Following incubation, the overnight cultures were pelleted and re-suspended in PBS to a final concentration of lxlO 10 CFU/ml.
  • Vaccination of chickens, twice, with the vector expressing the Cj0988c protein reduced cecal numbers of C. jejuni in birds an average of 2.5 logs CFU (geomean of 3.0 logs CFU) when compared to the cecal numbers of non- vaccinated control birds (Table 1).
  • One outlier of 1.00E+07 was present in 31 birds examined.
  • Cornish X Rock chickens were obtained from McMurray Hatchery (IA) and randomly assigned to isolated groups. The chickens were screened for the fecal presence of C. jejuni and/or Salmonella.
  • the chickens were vaccinated orally, at days 10 and 16, with 1 ml of the Salmonella vector expressing the Cj0988 protein ( ⁇ 10 10 CFU/ml) or the Salmonella empty vector and challenged with 10 5 CFU/ml of C. jejuni strain NCTC1 1168 10 days after the second vaccination. Prior to vaccination and challenge, chickens were fasted for 8 hours. Food was returned one hour post vaccination/challenge. Aside from this period, food and water were available ad libitum. The chickens were necropsied 10 days after challenge infection.
  • Vaccination Trial 1 Ten day old Table 3.
  • Vaccination Trial 2 Ten day old chickens vaccinated twice with the vector chickens vaccinated twice with the vector expressing gene Cj0998c, or the Salmonella expressing gene Cj0998c (two groups), or the empty vector only (Control-EV), or non- Salmonella empty vector only (Control-EV) vaccinated controls
  • Genes Q0588 and Q0248 were cloned and mutated in C. jejuni by insertion of a chloramphenicol cassette in the center of each gene.
  • two sets of primers were designed for each gene to yield fragments consisting of the initial and terminal 15 bases of the gene and their associated flanking regions. These fragments were cloned into a suicide vector and positioned around the chloramphenicol acetyltransferase (CAT) gene, such that the antibiotic cassette was between the initial and terminal regions of the gene, taking up -255 bases of each gene.
  • the vector containing the CAT gene and the flanking bases of each gene was then introduced by electroporation into C.
  • Chickens were obtained and housed as above. At 12 days, chickens were orally inoculated with 1.0 ml of approximately 1.0 x 10 5 per ml of viable C. jejuni M129 and the M129::tlyA mutant. At day 22 the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the M 129 : : tlyA mutant.
  • Chickens were obtained and housed as above. At 14 days, birds were orally inoculated with 1.0 ml of approximately 1.0 x 10 6 per ml of viable C. jejuni M129 and the M129::tlyA mutant. At day 28, the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the i ⁇ 29::tlyA mutant.
  • Chickens were obtained and housed as above. At 14 days, birds were orally inoculated with 1.0 ml of approximately 1.0 x 10 8 per ml of viable C. jejuni M129 and the M129::tlyA mutant. At day 28, the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the i ⁇ 29::tlyA mutant.
  • Chickens were obtained and housed as above. At 14 days, birds were orally inoculated with 1.0 ml of approximately 1.0 x 10 8 per ml of viable C. jejuni M129 and the Ml29::tlyA mutant. At day 28, the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the Ml 29 .tlyA mutant. Table 7. Colonization of chickens with a C. jejuni parent M129 and M129::tlyA strain.
  • Salmonella Typhimurium vector ⁇ 9992
  • the vector used is a Salmonella Typhimurium vector ⁇ 9992, as described above.
  • genes Q0588 and Q0248 were cloned into the vector plasmid pYA3493 and expressed from the attenuated Salmonella Typhimurium vector ⁇ 9992, as described above.
  • Chickens were obtained, housed, and vaccinated as above, with the exception that each chicken received 2 ml of vaccine, 1 ml per antigen, at each vaccination. Chickens were orally challenged with 1.0 ml of the homologous C. jejuni strain NCTC1 1168 ( ⁇ lxl0 5
  • Chickens were obtained and housed as above, with the exception that no fasting period was observed prior to vaccination and that water was removed for two hours prior to vaccination.
  • ⁇ lxl0 10 cfu of Salmonella expressing Cj0998c (prepared as above) was added to ⁇ 2 L of water in commercially available fountain waterers. Water was returned when all vaccine had been consumed (8-12 hours).
  • Controls received ⁇ 1 ⁇ 10 ⁇ 10 cfu empty vector Salmonella or no vaccine orally.
  • Chickens were orally challenged with 1.0 ml of the homologous C. jejuni strain NCTC1 1168 ( ⁇ lxl0 5 CFU/ml) at 10 days after the final vaccination. At day 36, the chickens were necropsied and Campylobacter enumerated as above. Campylobacter colonization was reduced in vaccinate groups by approximately 2.5 logs as compared to empty vector and positive control groups.
  • Salmonella synthesizing 1-dephosphorylated [corrected] lipopolysaccharide exhibits low endotoxic activity while retaining its immunogenicity. J Immunol 187, 412-423.

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Abstract

The present invention provides immunogenic compositions against Campylobacter and methods for using the immunogenic composition to generate an immune response against Campylobacter and/or reduce intestinal colonization by Campylobacter.

Description

Campylobacter Immunogenic Compositions and Uses Thereof
Cross Reference
This application claims priority to U.S. Provisional Patent Application Serial Numbers 61/632,888 filed February 1, 2012 and 61/689,078 filed May 29, 2012, incorporated by reference herein in their entirety.
Statement of Government Support
This invention was made with government support under grant number 127032 awarded by United States Department of Agriculture Hatch Funding. The government has certain rights in the invention.
Background
Campylobacteriosis is primarily a food-borne disease with the handling and consumption of poultry considered to be the most significant risk factor in transmission. Infection by Campylobacter spp. is one of the leading causes of bacterial gastroenteritis, causing an estimated 1.3 million cases annually in the U.S. (Scallan et al, 2011), resulting in health care costs of $ 0.8-5.6 billion per year (Buzby et al., 1997). Serious complications such as arthritis occur in an estimated 1-5% of cases (Pope et al, 2007)) and Guillain-Barre Syndrome, a form of neuromuscular paralysis, occurs at a rate of 1.0 per 1,000 patients (Altekruse and Tollefson, 2003). Due to the emergence and persistence of antibiotic resistance coupled with increasing regulatory restrictions on the industry, control strategies such as vaccination are urgently needed. To date, there is no intervention method or vaccine available to the producer to reduce numbers of Campylobacter in poultry going to processing.
Beginning July 1, 201 1, USDA-FSIS (Food Safety and Inspection Service) has implemented new performance standards for Campylobacter for young chicken chilled carcasses at slaughter establishments (FSIS NOTICE, 31-11, 6/30/1 1). These standards will allow no more than 8 positive Campylobacter samples out of a 51 -sample set, with plans to initially warn the companies and fines to be imposed in 2013. A large baseline study was conducted in our laboratory (funded by the USDA) to quantify Campylobacter levels in slaughtering plants from 2007-2009. Our studies demonstrated 21.9% (213/972) of post- chilled carcass rinse samples were positive for Campylobacter, which amounts to 11.17 per 51 -sample set. Clearly, this is over the allowable number of Campylobacter from chilled carcass samples and will precipitate the issuing of fines for both the producer and processing plant unless a reduction of Campylobacter in poultry can be obtained. Currently, there are no available intervention methods or vaccines available for producers to use to reduce the Campylobacter load in poultry.
Summary of the Invention
In a first aspect, the present invention provides immunogenic compositions, comprising one or more expression vectors comprising:
(a) at least one polynucleotide encoding a protein selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Cj0588 protein), and SEQ ID NO:6 (Cj0248 protein), or antigenic portions thereof; and
(b) a promoter operatively linked to the polynucleotide, wherein the promoter region is capable of directing expression of the encoded protein(s).
In a second aspect, the present invention provides immunogenic compositions, comprising
(a) one or more isolated proteins selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Q0588 protein), and SEQ ID NO:6 (Cj0248 protein), or antigenic portions thereof; and
(b) a pharmaceutically acceptable carrier.
In a third aspect, the present invention provides methods for stimulating an immune response against Campylobacter, comprising administering to a subject an effective amount of the immunogenic composition according to any embodiment of the invention to generate an immune response against Campylobacter.
In a fourth aspect, the present invention provides methods for reducing
Campylobacter intestinal colonization in a subject, comprising administering an amount effective of the immunogenic composition according to any embodiment of the invention to reduce Campylobacter intestinal colonization in the subject.
Description of the Figures
Figure 1 is a schematic drawing of the pYA3493 plasmid. Detailed Description of the Invention
All references cited are herein incorporated by reference in their entirety. Within this application, unless otherwise stated, the techniques utilized may be found in any of several well-known references such as: Molecular Cloning: A Laboratory Manual (Sambrook, et al,
1989, Cold Spring Harbor Laboratory Press), Gene Expression Technology (Methods in Enzymology, Vol. 185, edited by D. Goeddel, 1991. Academic Press, San Diego, CA), "Guide to Protein Purification" in Methods in Enzymology (M.P. Deutshcer, ed., (1990) Academic Press, Inc.); PCR Protocols: A Guide to Methods and Applications (Innis, et al.
1990. Academic Press, San Diego, CA), Culture of Animal Cells: A Manual of Basic Technique, 2nd Ed. (R.I. Freshney. 1987. Liss, Inc. New York, NY), Gene Transfer and Expression Protocols, pp. 109-128, ed. E.J. Murray, The Humana Press Inc., Clifton, N.J.), and the Ambion 1998 Catalog (Ambion, Austin, TX).
As used herein, the singular forms "a", "an" and "the" include plural referents unless the context clearly dictates otherwise. "And" as used herein is interchangeably used with "or" unless expressly stated otherwise.
All embodiments of any aspect of the invention can be used in combination, unless the context clearly dictates otherwise.
In a first aspect, the present invention provides immunogenic compositions, comprising one or more expression vectors comprising:
(i) at least one polynucleotide encoding a protein selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Q0588 protein), and SEQ ID NO:6 (Q0248 protein), or antigenic portions thereof; and
(ii) a promoter operatively linked to the polynucleotide , wherein the promoter region is capable of directing expression of the encoded protein(s).
The inventors have identified three putative virulence genes (Q0248, Q0588, and Cj 0998c) from C. jejuni encoding novel proteins from the outer-membrane of the bacterium. The inventors have further discovered that each of the Cj0998c protein, the Q0588 protein, and the Q0248 protein are potent immunogens for stimulating an effective immune response against Campylobacter jejuni ("C. jejuni"). For example, as disclosed in detail herein, two separate vaccination trials of chickens with a vector expressing the Cj0988c protein demonstrated reduced numbers of C. jejuni in birds after challenge an average of 2.5 logs CFU (geomean 3 logs) when compared to the cecal numbers of non-vaccinated control birds. Furthermore, vaccination trials demonstrated a significant reduction (1-4 logs) (1 log with heterologous strain and 4 logs with homologous strain) of C. jejuni in cecal contents of chickens vaccinated with vectors expressing the Q0588 protein and challenged with
Campylobacter jejuni. Each of the proteins was initially isolated from an outer-membrane (OMP) extraction of a C. jejuni biofilm.
Thus, the immunogenic compositions of the invention can be used, for example for stimulating an immune response in subjects at risk of Campylobacter infection and/or colonization, including but not limited to vertebrates such as chickens, turkeys, birds, cattle, sheep, pigs, dogs, cats, and humans.
In one embodiment, the one or more expression vectors encode one of the recited proteins, or antigenic fragments thereof. In another embodiment, the one or more expression vectors encode two proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: SEQ ID NO:2 and SEQ ID NO:4; SEQ ID NO:2 and SEQ ID NO:6; or SEQ ID NO:6 and SEQ ID NO:8), or antigenic fragments thereof. In this embodiment, a single expression vector may encode both proteins, or antigenic fragments thereof, or the composition may comprise two expression vectors, with each expression vector encoding one of the recited proteins, or antigenic fragments thereof. In this embodiment, the expression vector used may be the same (other than the protein coding sequence) or different.
In a further embodiment, the one or more expression vectors encode all three of the proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: SEQ ID NO:2, SEQ ID NO:4, and SEQ ID NO:6) , or antigenic fragments thereof. In this embodiment, a single expression vector may encode all three proteins, or antigenic fragments thereof. Alternatively, the composition may comprise two expression vectors, with one expression vector encoding one of the recited proteins, or antigenic fragments thereof, and the other expression vector encoding two of the recited proteins, or antigenic fragments thereof. In a further alternative of this embodiment, the composition may comprise three expression vectors, with each expression vector encoding one of the recited proteins, or antigenic fragments thereof. In each of these alternative embodiments, the multiple expression vectors used may be the same or different. Non- limiting examples of expression vectors encoding the one or more recited proteins are provided herein. Based on the present disclosure, it is well within the level of those of skill in the art to prepare expression vectors according to all embodiments of the invention. The Cj0998c, Q0588, and Q0248 proteins are present in highly conserved variants between different strains of C. jejuni, and thus the proteins encoded by the one or more expression vectors can be at least 80% identical or similar (residues with similar properties, i.e.: hydrophobic, hydrophilic, etc.) over the full length of the recited amino acid sequences, or antigenic fragments thereof. In various further embodiments, the proteins encoded by the one or more expression vectors are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
In one embodiment, the at least one polynucleotide encodes a protein selected from the group consisting of the following, or an antigenic fragment thereof:
(a) SEQ ID NO: 7 (Cj0998c genus)
MKK( /F)(LA^)(V/A/L)S(V/I)(L/F)S(S/F)CLLASALSAVSFKEDSLK( )SFEGYKTKD M( )G(TA^/I/A)(m)GEFKlWEY(K/ )FSK(N/S)(I/T)KD(L/F)ASYLKGAKATI(K/E)P S( i/D)AFM(G/S)EG(N/L)D( )IT ITKVFFPALLG(D/N)(T/A)DIKVVFQD(V/A/M)I(A /V)GE-
X1ITMDKKSTI(V/I)PLTYTIKD( /D)KFEAKGQ(L/F)DLH(T/A)FKN(G/A)SKALKALSD (V/A)A(A/T/P)GHGGISWPLVDISFNADL(A/T/V)E
wherein XI is absent or is
NKGVISAK (SEQ ID NO: 135);
(b) SEQ ID NO:8: (Q0588 genus)
XI-
(L/M)(D/N/E)LL(S/R)EIY(V/I)SRAALKLK(K/N)FLEEN(D/G/N)IE( )(K/N)(H/Q/N)K NCLDIGSSTGGFVQILLEN(Q/K)ALKIT(A/T)LDVG(S/N)NQLH(P/S/L)(S/N)LR(V/A/T) NE(K/I)( )IL(H/Y)EN(T/I)DLR(A/TA^)FKSEEKFE(L/F)(V/I)TCDVSFISL( )NLLYY ( )(D/N)NLAL(K/R)EIILLFKPQFEVGKN(I/V)KRDKKGVLKD(D/G)(K/R)(AA^)ILK A(R/K)MDFEK(A/E)CAKL(G/S)W(L/F/I)LKNTQKS(S/C)IKGKEGNVEYFYYYIKN wherein XI is absent or is
M(R/I)(F/-)(D/-
)FF(V/I)SKRL(N/D)ISRNKALELIE(N/S)EE( )LLNGK(S/N)FKAS(F/C)DV
KN(F/L)LENLKK(T/A/K)QDLN(P/L/S)E(D/E)(I/V)(L/Y)L(A/T/S)(N/D/K)(E/G)L(K/N) (SEQ ID NO: 136); and (c) SEQ ID NO:9 (Q0248 genus)
(M/-)I(G/-)DMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKV(A/V)EIISSDPL MTAKLLQLANSPYYGFTREITTI(N/S)QVITLLG(V/I)GNirNIV(M/T)ADSI(R/K)D( /S)F KIDVSPYGL(N/D)T(Q/K)( A^)FL(K/R)(T/N)CN(E/D)EATFI(A/V/T)NWLNDEDKKLSH LLVPCAMLLRLGIVIFSNFLIQN(H/Y/F)(K/R)-X1 wherein XI is absent, or is
(D/E)K(D/E)FL(A/T)FLN(-/E/K)(-/T)K(N/S/I))EN(L/I)ALAENEFLGVDHISFLGFLL(H/Y) RW FDD(V/I)LIESICFV(R/H)TPHAARE(K/E)VKKSAYALAITDHLF(A/T)PHDGSSPF N
(A/V/T)KAAVALL(K/E)EAK-X2 (SEQ ID NO: 137 or 138); and wherein X2 is absent or is selected from the group consisting of
TQGINFDL(N/D)NLLSKLP(N/S)KAKENL(N/D)(K/E)ED (SEQ ID NO: 139) and
NSRN (SEQ ID NO : 140).
In various further embodiments, the at least one polynucleotide encodes a protein selected from the group consisting of SEQ ID NOS: 10-106, or an antigenic fragment thereof. SEQ ID NOS, 44-82 are each Cj0998c protein homologs from other C. jejuni strains; SEQ ID NOS, 83 tol06 are each Q0588 protein homologs from other C. jejuni strains; and SEQ ID NOS, 10 to 43 are each Q0248 protein homologs from other C. jejuni strains.
The expression vectors may encode "antigenic portions" of the recited protein. As used herein, and "antigenic portion" is any fragment of 10 or more contiguous amino acids in the recited amino acid sequence. In various further embodiments, the antigenic portion is any fragment of any of the embodiments of the invention is 15, 20, 25, 30, 40, 50, 75, 100, 125, 150, 175, 200, 225, 250, or 275 contiguous amino acids of the recited amino acid sequence.
The one or more isolated polynucleotides may be single or double stranded DNA, RNA, genomic DNA, or cDNA. The one or more isolated polynucleotides may be any nucleic acids encoding the recited one or more proteins, or antigenic fragments thereof. In one embodiment, the one or more isolated polynucleotides are one or more of SEQ ID NO: 1 (Cj 0998c gene), SEQ ID NO: 3 (Q0588 gene), and SEQ ID NO: 5 (Q0248 gene), or portions thereof encoding antigenic portions of the recited proteins. It will be apparent to those of skill in the art, based on the teachings herein, what polynucleotide sequences will encode the recited polypeptides or antigenic fragments thereof.
As used herein, "isolated polynucleotides" are those that have been removed from their normal surrounding nucleic acid sequences in the genome or in cDNA sequences. Such isolated nucleic acid sequences may comprise additional sequences useful for promoting expression and/or purification of the encoded protein, including but not limited to polyA sequences, modified Kozak sequences, and sequences encoding epitope tags, export signals, secretory signals, nuclear localization signals, and plasma membrane localization signals, as appropriate for a given use.
Any expression vector suitable for an intended use can be used in the immunogenic compositions of the present invention. Such expression vectors can be of any type known in the art, including but not limited to plasmid and viral-based expression vectors. The construction of expression vectors for use in transfecting prokaryotic cells is also well known in the art, and thus can be accomplished via standard techniques. (See, for example, Sambrook, Fritsch, and Maniatis, in: Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory Press, 1989; Gene Transfer and Expression Protocols, pp. 109-128, ed. E.J. Murray, The Humana Press Inc., Clifton, N.J.), and the Ambion 1998 Catalog (Ambion, Austin, TX). The expression vector must be replicable in the host organisms either as an episome or by integration into host chromosomal DNA. In a preferred embodiment, the expression vector comprises a plasmid. However, the invention is intended to include other expression vectors that serve equivalent functions, such as viral vectors. Specifics of the expression vector will depend on the ultimate desired use. Designing appropriate expression vectors for an intended use is well within the level of those of skill in the art based on the teachings herein.
Any suitable promoter may be used that can direct expression (i.e.: is "operatively linked") of the encoded proteins. The term "promoter" includes any nucleic acid sequence sufficient to direct expression of the encoded protein(s), including inducible promoters, repressible promoters and constitutive promoters. If inducible, there are sequences present which mediate regulation of protein expression so that the polynucleotide is transcribed only when an inducer molecule is present. Such cis-active sequences for regulated expression of an associated polynucleotide in response to environmental signals are well known to the art. The expression vector may comprise any other control sequences as may be suitable for an intended use. The control sequences need not be contiguous with the nucleic acid sequences, so long as they function to direct the expression thereof. Thus, for example, intervening untranslated yet transcribed sequences can be present between a promoter sequence and the nucleic acid sequences and the promoter sequence can still be considered "operably linked" to the coding sequence. Other such control sequences include, but are not limited to, polyadenylation signals, enhancers, termination signals, and ribosome binding sites. The immunogenic compositions of the present invention may further comprise any other suitable components as may be useful for a given purpose. In various non-limiting embodiments, the compositions may further comprise one or more expression vectors comprising at least one polynucleotide encoding a protein selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to an amino acid sequence of SEQ ID NO: 142 (Cj 1534c protein; encoded, for example, by SEQ ID NO: 141), SEQ ID NO: 108 (1656c protein; encoded, for example, by SEQ ID NO: 107), SEQ ID NO: 110 (0428 protein; encoded, for example, by SEQ ID NO: 109), SEQ ID NO: 112 (0168c protein; encoded, for example, by SEQ ID NO: 1 11), SEQ ID NO: 1 14 (0427 protein;
encoded, for example, by SEQ ID NO: 113), SEQ ID NO: 116 (CjOl 13 protein; encoded, for example, by SEQ ID NO: 1 15),SEQ ID NO: 1 18 (Cj0982c protein; encoded, for example, by SEQ ID NO: l 17), SEQ ID NO: 120 (Cj0921c protein; encoded, for example, by SEQ ID NO: 119), SEQ ID NO: 122 (Cj l259 protein; encoded, for example, by SEQ ID NO: 121), SEQ ID NO: 124 (Cj 1339c protein; encoded, for example, by SEQ ID NO: 123), SEQ ID NO: 126 (Cj0034c protein; encoded, for example, by SEQ ID NO: 125), SEQ ID NO: 128 (Cj0404 protein; encoded, for example, by SEQ ID NO: 127), SEQ ID NO: 130 (Cj0365c protein; encoded, for example, by SEQ ID NO: 129),
SEQ ID NO: 132 (Cj0755 protein; encoded, for example, by SEQ ID NO: 131), and SEQ ID NO: 134 (Cj0420 protein; encoded, for example, by SEQ ID NO: 133), or antigenic fragments thereof.
The one or more expression vectors may be the same or different one or more expression vectors that comprise the at least one polynucleotide encoding SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Q0588 protein), SEQ ID NO:6 (Q0248 protein), or fragments thereof. All embodiments of the one or more expression vectors disclosed above apply equally for these additional components. By way of non-limiting example, the one or more expression vectors may be 1, 2, 3, or 4 additional vectors that encode SEQ ID NO: 142 (Cj 1534c protein), SEQ ID NO: 108 (1656c protein), SEQ ID NO: l 10 (0428 protein), SEQ ID NO: 112 (0168c protein), and SEQ ID NO: 1 14 (0427 protein), or antigenic fragments thereof. Those of skill in the art will understand the variety of other combinations that can be employed in accordance with the methods of the invention. Based on the present disclosure, it is well within the level of those of skill in the art to prepare expression vectors according to all embodiments of the invention.
Similar to the immunogens recited above, the optional protein immunogens are present in highly conserved variants between different strains of Campylobacter jejuni, and thus the proteins encoded by the one or more expression vectors can be at least 80% identical over the full length of the recited amino acid sequences, or antigenic fragments thereof. In various further embodiments, the proteins encoded by the one or more expression vectors are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
The immunogenic compositions of the present invention may be used for inducing an immune response by administration as naked DNA using standard methods, such as by parenteral delivery. Alternatively, the expression vectors may comprise viral expression vectors, including but not limited to a recombinant adeno-associated virus (AAV) gene delivery vector. In this embodiment, the expression vector is bounded on the 5' and 3' end by functional AAV inverted terminal repeat (ITR) sequences. By "functional AAV ITR sequences" is meant that the ITR sequences function as intended for the rescue, replication and packaging of the AAV virion. Recombinant AAV (rAAV) virions encapsidating the expression vectors of the invention may be produced using standard methodology. In one embodiment, an AAV expression vector according to the invention is introduced into a producer cell, followed by introduction of an AAV helper construct, where the helper construct includes AAV coding regions capable of being expressed in the producer cell and which complement AAV helper functions absent in the AAV vector. This is followed by introduction of helper virus and/or additional vectors into the producer cell, wherein the helper virus and/or additional vectors provide accessory functions capable of supporting efficient rAAV virus production. The producer cells are then cultured to produce rAAV. These steps are carried out using standard methodology. Replication-defective AAV virions encapsulating the recombinant AAV vectors of the instant invention are made by standard techniques known in the art using AAV packaging cells and packaging technology. Examples of these methods may be found, for example, in U.S. Pat. Nos. 5,436, 146; 5,753,500, 6,040, 183, 6,093,570 and 6,548,286, expressly incorporated by reference herein in their entirety. Further compositions and methods for packaging are described in Wang et al. (US 2002/0168342), also incorporated by reference herein in its entirety. Any suitable method for producing viral particles for delivery can be used.
In another embodiment, the one or more expression vectors are present in a carrier cell, including but not limited to an avirulent, non-Campylobacter bacterial carrier cell. Live bacterial vaccine "vectors" (i.e.: bacterial cells comprising immunogenic compositions) have been used successfully to elicit effective immune responses in order to prevent infection. Recombinant attenuated bacterial cell delivered vaccines have been adapted to stably express protective antigens at high levels. They are capable of stimulating strong primary humoral, mucosal and lasting memory immune responses without significant tissue damage or other performance reducing effects. In various non-limiting embodiments, the bacterial carrier cell is an avirulent bacterial cell selected from the group consisting of attenuated L.
monocytogenes, attenuated Salmonella spp., attenuated V. cholerae, attenuated
Shigella spp., attenuated M. bovis BCG, attenuated Y. enterocolitica, attenuated B.
anthracis, S. gordonii, Lactobacillus spp., and Staphylococcus spp. As used herein, "attenuated" means that the bacteria is reduced in causing disease symptoms in a host it is delivered to compared to a non-attenuated bacterial vector. Suitable attenuated bacteria can be any species or strain that is or can be sufficiently attenuated to allow for its non- pathological administration to humans and/or animals in live and/or dead form. In one embodiment, an attenuated Salmonella species is used. In exemplary embodiments,
Salmonella that can be used include, but are not limited to Salmonella enterica strains selected from the group consisting of S. Typhimurium, S. Enteriditis, S. Heidelberg,
5*. Gallinarum, 5*. Hadar, 5*. Agona, 5*. Kentucky, S. Typhi, 5*. Paratyphi and S.Infantis. S. Typhimurium is especially useful for vaccination purposes because the genome sequence is fully characterized and many animal studies confirm its safe medical use. Recombinant attenuated Salmonella vaccines (RASVs) have been constructed to deliver antigens from other pathogens to induce immunity to those pathogens in vaccinated hosts; see, for example, Curtiss et al, Crit Rev Immunol. 2010;30(3):255-70; 2010; Qiu et al, J. Virological Methods 188: 108; Strugnell et al, Infect. Immunol. 1992, 60:3994; Layton et al, Clinical and Vaccine Immunology march 2011, 449-454; Al-Ojali et al, Microbial Pathogenesis 52:326 (2012); and (Wyszynska et al, 2004) Wyszynska et al. (2004). In one embodiment, the RASV comprises attenuating mutations in the pmi (mannose-6-phosphate isomerase), wr (ferric uptake regulator) and crp (cAMP regulatory protein) genes (see, for example, (Li et al, PNAS 106:592-597 2009, Curtiss et al, 2009) and US 8, 133,493. In another embodiment, the RASV comprises the χ9992 vector disclosed in US 8, 133,493. In another embodiment, the RASV is one that is commercially available, such as Megan®Vac 1 (Lohman Animal Health, US).
Attenuated bacterial cells can be transfected with the one or more expression vectors using standard techniques in the art.
In a second aspect, the present invention provides an immunogenic composition, comprising (a) one or more isolated proteins selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Q0588 protein), and SEQ ID NO:6 (Q0248 protein), or antigenic portions thereof; and
(b) a pharmaceutically acceptable carrier.
As disclosed above for the first aspect of the invention, the immunogenic
compositions of the second aspect of the invention can be used, for example for stimulating an immune response in subjects at risk of C. jejuni infection or colonization, including but not limited to vertebrates such as chickens, turkeys, cattle, sheep, pigs, and humans.
In one embodiment, the immunogenic composition comprises one of the recited proteins, or antigenic fragments thereof. In another embodiment, the immunogenic composition comprises two of the proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: SEQ ID NO:2 and SEQ ID NO:4; SEQ ID NO:2 and SEQ ID NO:6; or SEQ ID NO:6 and SEQ ID NO:8), or antigenic fragments thereof. In a further embodiment, the immunogenic composition comprises all three of the proteins comprising an amino acid sequence at least 80 percent identical to the recited amino acid sequences (i.e.: (i.e.: SEQ ID NO:2, SEQ ID NO:4, and SEQ ID NO:6) , or antigenic fragments thereof.
The Cj0998c, Q0588, and Q0248 proteins are present in highly conserved variants between different strains of C. jejuni, and thus the proteins can be at least 80% identical over the full length of the recited amino acid sequences, or antigenic fragments thereof. In various further embodiments, the proteins are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
In one embodiment, the at least one protein is selected from the group consisting of the following, or an antigenic fragment thereof:
(a) SEQ ID NO: 7 (Cj0998c genus)
MKK( /F)(LA^)(V/A/L)S(V/I)(L/F)S(S/F)CLLASALSAVSFKEDSLK( )SFEGYKTKD M( )G(TA^/I/A)(m)GEFKlWEY(K/ )FSK(N/S)(I/T)KD(L/F)ASYLKGAKATI(K/E)P S( i/D)AFM(G/S)EG(N/L)D( )IT ITKVFFPALLG(D/N)(T/A)DIKVVFQD(V/A/M)I(A /V)GE-
X1ITMDKKSTI(V/I)PLTYTIKD( /D)KFEAKGQ(L/F)DLH(T/A)FKN(G/A)SKALKALSD (V/A)A(A/T/P)GHGGISWPLVDISFNADL(A/T/V)E
wherein XI is absent or is NKGVISAK (SEQ ID NO: 135);
(b) SEQ ID NO:8: (Cj0588 genus)
XI- (L/M)(D/N/E)LL(S/R)EIY(V/I)SRAALKLK(K/N)FLEEN(D/G/N)IE( )(K/N)(H/Q/N)K NCLDIGSSTGGFVQILLEN(Q/K)ALKIT(A/T)LDVG(S/N)NQLH(P/S/L)(S/N)LR(V/A/T) NE(K/I)( )IL(H/Y)EN(T/I)DLR(A/TA^)FKSEEKFE(L/F)(V/I)TCDVSFISL( )NLLYY ( )(D/N)NLAL(K/R)EIILLFKPQFEVGKN(I/V)KRDKKGVLKD(D/G)(K/R)(AA^)ILK A(R/K)MDFEK(A/E)CAKL(G/S)W(L/F/I)LKNTQKS(S/C)IKGKEGNVEYFYYYIKN wherein XI is absent or is
M(R/I)(F/-)(D/-
)FF(V/I)SKRL(N/D)ISRNKALELIE(N/S)EE( )LLNGK(S/N)FKAS(F/C)DV
KN(F/L)LENLKK(T/A/K)QDLN(P/L/S)E(D/E)(I/V)(L/Y)L(A/T/S)(N/D/K)(E/G)L(K/N) (SEQ ID NO: 136); and
(c) SEQ ID NO:9 (Q0248 genus)
(M/-)I(G/-)DMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKV(A/V)EIISSDPL MTAKLLQLANSPYYGFTREITTI(N/S)QVITLLG(V/I)GNIINrV(M/T)ADSI(R/K)D(N/S)F KIDVSPYGL(N/D)T(Q/K)(NA^)FL(K/R)(T/N)CN(E/D)EATFI(A/V/T)NWLNDEDKKLSH LLVPCAMLLRLGIVIFSNFLIQN(H/Y/F)(K/R)-X1 wherein XI is absent, or is
(D/E)K(D/E)FL(A/T)FLN(-/E/K)(-/T)K(N/S/I))EN(L/I)ALAENEFLGVDHISFLGFLL(H/Y) RWNFDD(V/I)LIESICFV(R/H)TPHAARE(K/E)VKKSAYALAITDHLF(A/T)PHDGSSPF N
(A/V/T)KAAVALL(K/E)EAK-X2 (SEQ ID NO: 137 or 138); and wherein X2 is absent or is selected from the group consisting of
TQGINFDL(N/D)NLLSKLP(N/S)KAKENL(N/D)(K/E)ED (SEQ ID NO: 139) and
NSRN (SEQ ID NO: 140).
In various further embodiments, the at least one polynucleotide encodes a protein selected from the group consisting of SEQ ID NOS: 10-106, or an antigenic fragment thereof. SEQ ID NOS, 44-82 are each Cj0998c protein homologs from other C. jejuni strains; SEQ ID NOS, 83-106 are each Q0588 protein homologs from other C. jejuni strains; and SEQ ID NOS, 10-43 are each Q0248 protein homologs from other C. jejuni strains. The immunogenic composition of any embodiment of this second aspect of the invention may comprise "antigenic portions" of the recited proteins. As used herein, and "antigenic portion" is any fragment of 10 or more contiguous amino acids in the recited amino acid sequence. In various further embodiments, the antigenic portion is any fragment of 15, 20, 25, 30, 40, 50, 75, 100, 125, 150, 175, 200, 225, 250, or 275 contiguous amino acids of the recited amino acid sequence.
The immunogenic compositions of the second aspect of the invention may comprise proteins modified in any suitable way. In one embodiment, the protein component(s) of the composition are treated to extend in vivo half-life by, for example, such as by PEGylation, HESylation, PASylation, or glycosylation. The proteins may also be glycosylated as deemed appropriate, using standard techniques in the art. In another embodiment, those protein components in the immunogenic compositions that possess N-glycosylation sequences (NXS or NXT) may be glycosylated, to help further stimulate the immune response.
The immunogenic compositions of the second aspect of the invention may further comprise any other suitable components as may be useful for a given purpose. In various non-limiting embodiments, the compositions may further comprise one or more additional proteins selected from the group consisting of proteins comprising an amino acid sequence at least 80% identical to SEQ ID NO: 142 (Cj 1534c protein), SEQ ID NO: 108 (Cj 1656c protein), SEQ ID NO: 1 10 (Cj0428 protein), SEQ ID NO: 112 (Cj0168c protein), SEQ ID NO: 114 (Cj0427 protein), SEQ ID NO: 1 16 (CjOl 13 protein),SEQ ID NO: 1 18 (Cj0982c protein), SEQ ID NO: 120 (Cj0921c protein), SEQ ID NO: 122 (Cj l259 protein), SEQ ID NO: 124 (Cj 1339c protein), SEQ ID NO: 126 (Cj0034c protein), SEQ ID NO: 128 (Cj0404 protein), SEQ ID NO: 130 (Cj0365c protein), SEQ ID NO: 132 (Cj0755 protein), and SEQ ID NO: 134 (Cj0420 protein), or antigenic fragments thereof. Similar to the immunogens recited above, the optional protein immunogens are present in highly conserved variants between different strains of Campylobacter jejuni, and thus the proteins can be at least 80% identical over the full length of the recited amino acid sequences, or antigenic fragments thereof. In various further embodiments, the proteins encoded by the one or more expression vectors are at least 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, or 100% percent identical over the full length of the recited amino acid sequence(s), or antigenic fragment thereof.
In another embodiment, the immunogenic compositions of the second aspect of the invention may further comprise a C jejuni pilus protein as described in WO 2008/008092, incorporated by reference herein in its entirety. The pilus protein described in WO 2008/008092 was shown to stimulate an immune response against C. jejuni, and thus it is suitable for inclusion in the immunogenic compositions of the second aspect of the present invention. Methods for isolating the C. jejuni pilus protein are described in WO 2008/008092.
The immunogenic compositions of the invention may comprise any suitable amount/dosage of the composition as determined most appropriate. In one embodiment, the immunogenic composition comprises about 106 - 1010 avirulent bacterial cells per dose. In another embodiment where the composition comprises immunogenic proteins, the composition may comprise about 0.1 ug/kg-100 mg/kg body weight of the proteins;
alternatively, it may be 0.5 ug/kg to 50 mg/kg; 1 ug/kg to 25 mg/kg, or 5 ug/kg to 10 mg/kg body weight of the proteins.
The immunogenic compositions of the present invention (i.e.: any embodiment or combination of embodiments of the first and second aspects of the invention) can be formulated by any of the means known in the art. The immunogenic compositions are typically formulated as a pharmaceutical composition, such as those disclosed above, and can be formulated for administration via any suitable route, including orally, as injectables, parentally, by inhalation spray, intranasally, rectally, mucosally, topically, or for
administration by oral gavage or ad libitum feeding, for example, in drinking water, either as liquid solutions or suspension, in dosage unit formulations containing conventional pharmaceutically acceptable carriers, adjuvants, and vehicles. The term parenteral as used herein includes, subcutaneous, intravenous, intra-arterial, intramuscular, intrasternal, intratendinous, intraspinal, intracranial, intrathoracic, infusion techniques or intraperitoneally. Solid forms suitable for solution in, or suspension in, liquid prior to injection or other administration may also be prepared. The compositions may also, for example, be emulsified, or the encapsulated in liposomes or microparticles. The immunogenic compositions may also be present in and/or expressed by transgenic plants.
The immunogenic compositions according to the present invention may further comprise any suitable adjuvant. Immunological adjuvants in general comprise substances that boost the immune response of the host in a nonspecific manner. A number of different adjuvants are known in the art. Examples of adjuvants are Freunds Complete and Incomplete adjuvant, vitamin E, non-ionic block polymers and polyamines such as dextransulphate, carbopol and pyran, oligopeptide, emulsified paraffin-Emulsigen™ (MVP Labs, Ralston, Nebr.), L80 adjuvant containing aluminum hydroxide (Reheis, N.J.), Quil A™ (Superphos); surface active substances such as Span™, Tween™, hexadecylamine, lysolecitin, methoxyhexadecylglycerol and saponins; peptides such as muramyldipeptides, dimethylglycine, and tuftsin; immune-stimulating complexes (ISCOMS), mineral oil e.g. Bayol or Markol, vegetable oils or emulsions thereof, aluminum hydroxide; N-acetyl- muramyl-L-threonyl-D-isoglutamine (thr-MDP); N-acetyl-nor-muramyl-L-alanyl-D- isoglutamine (CGP 1 1637, referred to as nor-MDP); N-acetylmuramyl-L-alanyl-D- isoglutaminyl-L-alanine-2-(l'-2'-dipalmitoyl-s- n-glycero-3hydroxyphosphoryloxy)- ethylamine (CGP 19835A, referred to as MTP-PE); and RIBI, which contains three components extracted from bacteria: monophosphoryl lipid A, trehalose dimycolate and cell wall skeleton (MPL+TDM+CWS) in a 2% squalene/Tween 80 emulsion. In embodiments designed for mucosal administration, the immunogenic compositions may further comprise an adjuvant, including but not limited to such as the nontoxic cholera toxin B subunit (Sigma Chemical Company, St. Louis, Mo.) and organometallopolymers including linear, branched or cross-linked silicones which are bonded at the ends or along the length of the polymers to the particle or its core. Such polysiloxanes can vary in molecular weight from about 400 up to about 1,000,000 daltons; the preferred length range is from about 700 to about 60,000 daltons. Suitable functionalized silicones include (trialkoxysilyl) alkyl-terminated polydialkylsiloxanes and trialkoxysilyl terminated polydialkylsiloxanes, for example, 3- (triethyoxysilyl) propyl terminated polydimethylsiloxane. See U.S. Pat. No. 5,571,531, incorporated by reference herein. Phosphazene polyelectrolytes can also be incorporated into immunogenic compositions for mucosal administration (See e.g., U.S. Pat. No. 5,562,909).
The immunogenic compositions according to the present invention may also comprise preservatives such as sodium azide, thimersol, gentamicin, neomycin, and polymyxin.
The immunogenic compositions may be mixed with excipients or carriers which are pharmaceutically acceptable and compatible with the protein immunogen(s) to be used. Suitable excipients include, but are not limited to, water, saline, dextrose, glycerol, ethanol, or the like and combinations thereof. Such an immunogenic composition can easily be prepared by admixing the protein with a pharmaceutically acceptable carrier. A
pharmaceutically acceptable carrier is understood to be a compound that does not adversely affect the health of the animal to be vaccinated, at least not to the extent that the adverse effect is worse than the effects seen when the animal is not vaccinated. A pharmaceutically acceptable carrier can be e.g. sterile water or a sterile physiological salt solution. In a more complex form, the carrier can e.g. be a buffer.
The immunogenic composition may further comprises stabilizers, e.g. to protect degradation-prone components from being degraded, to enhance the shelf-life of the composition, or to improve freeze-drying efficiency. Useful stabilizers include, without limitation, SPGA, skimmed milk, gelatin, bovine or other serum albumin, carbohydrates e.g. sorbitol, mannitol, trehalose, starch, sucrose, dextran or glucose, proteins such as albumin or casein or degradation products thereof, and buffers, such as alkali metal phosphates. Where an albumin is used, it is desirably from the same species as the animal (or human) to which the immunogenic composition containing it will be administered. Freeze-drying is an efficient method for conservation. Freeze-dried material can be stored stable for many years. Storage temperatures for freeze-dried material may well be above zero degrees, without being detrimental to the material. Freeze-drying can be done according to all well-known standard freeze-drying procedures. However, the immunogenic compositions of the invention may be stored in any suitable manner. For example, the immunogenic compositions could be lyophilized or otherwise stabilized and stored in food or water for delivery.
In an exemplary embodiment when the immunogenic compositions are designed for administration to a non-human subject, such as chickens, turkeys, birds, sheep, pigs, cattle, dogs, or cats, the immunogenic composition is formulated for mucosal administration, such as by admixing of the composition with drinking water or food, or admixing for use as a spray, to mist over the animals to uptake the immunogenic composition during grooming behavior. However, any suitable method of administration can be used for any subject. Thus, in various embodiments the immunogenic compositions are formulated for intraocular, intranasal, or transdermal administration.
In a third aspect, the present invention provides methods for stimulating an immune response against Campylobacter, comprising administering to a subject an effective amount of the immunogenic composition according to any embodiment or combination of embodiments of the first or second aspects of the present invention to generate an immune response against Campylobacter.
In a fourth aspect, the present invention provides methods for reducing
Campylobacter intestinal colonization in a subject, comprising administering an amount effective of the immunogenic composition according to any embodiment or combination of embodiments of the first or second aspects of the present invention to reduce Campylobacter intestinal colonization in the subject.
As disclosed herein, the inventors have identified three novel putative virulence genes
(CJ0248, CJ0588, and Cj0998c) from C. jejuni encoding novel proteins from the outer- membrane of the bacterium. The inventors have further discovered that each of the Cj 0998c protein, the CJ0588 protein, and the CJ0248 protein are potent immunogens for stimulating an effective immune response against Campylobacter jejuni ("C. jejuni"). For example, as disclosed in detail herein, two separate vaccination trials of chickens with a vector expressing the Cj0988c protein demonstrated reduced numbers of C. jejuni in birds after challenge an average of 2.5 logs CFU (geomean 3 logs) when compared to the cecal numbers of non- vaccinated control birds. Furthermore, vaccination trials demonstrated a significant reduction (1-4 logs) (1 log with heterologous strain and 4 logs with homologous strain) of C. jejuni in cecal contents of chickens vaccinated with vectors expressing the Q0588 protein and challenged. Each of the proteins was initially isolated from an outer- membrane (OMP) extraction of a C. jejuni biofilm.
Campylobacteriosis is a food-borne disease primarily generally caused by C jejuni. The major risk factor in acquiring the disease is the handling and consumption of poultry. However, the epidemiology of poultry colonization with Campylobacter such as C. jejuni is extremely complex. Birds become colonized within 14 days of hatching, spreading the infection throughout the flock by the end of the grow-out period. Strain differences, based on subtyping and/or genotyping assays, exist between and within flocks. Although some flocks remain Campylobacter-free, most flocks have 50-100% of the birds colonized by grow-out. Nevertheless, broilers (i.e., chickens of either gender that will be slaughtered for meat at about 5 to 8 weeks old depending on weight) become contaminated with Campylobacter, such as C. jejuni and although this microorganism acts as normal flora in the chicken, undercooked chicken is a primary vehicle for transmission of Campylobacter, such as C. jejuni to humans and remains a significant public health concern.
The methods may be used on any suitable subject at risk of Campylobacter infection, including but not limited to vertebrates such as chickens, turkeys, birds, cattle, sheep, pigs, dogs, cats, and humans. In one non-limiting embodiment, a human subject may be anyone that consumes chicken, beef, turkey, or pork. In another embodiment, a human subject may be one that works with animals (i.e.: farm workers, workers at slaughterhouses and meat processing plants, etc.) such as chickens, turkeys, cattle, sheep, and pigs.
In another embodiment, the subject is a feed animal such as chickens, turkeys, cattle, sheep, and pigs. In a preferred embodiment, the subject is a chicken. In these embodiments, the feed animal may be of any suitable age. Birds become colonized with C. jejuni within 14 days of hatching, spreading the infection throughout the flock by the end of the grow-out period. Thus, in one embodiment, the methods are initially carried out by about 14 days after hatching. It will be understood by those of skill in the art that additional booster
administrations may be desirable after the initial administration; such booster administrations can be carried out at any suitable time, such as by about 21 days after hatching. In another non-limiting embodiment where the subject is a feed animal, the methods are carried out before slaughtering. However, it will be understood that the methods can be used on chickens or turkeys at any suitable time, as appropriate for a given use.
Campylobacteriosis is currently one of the most common bacterial food-borne diseases in humans in the U.S. and is responsible for causing an estimated 1.3 million cases annually in the U.S., often accompanied by acute gastroenteritis. The infectious dose in the development of the disease is variable and ranges from 500 to 106 organisms. Variation in infectious dose is thought to be due to either individual susceptibility or to the relative virulence of the organism. The incubation period is one to seven days with clinical symptoms including fever, severe abdominal cramps, and a watery diarrhea or a dysenterylike syndrome typical of shigellosis. The disease is usually self-limiting, lasting from two to seven days but occasionally is fatal (120-360 deaths per year), mainly in infants and young adults. Serious complications such as arthritis occur in an estimated 1-5% of cases and Guillain-Barre Syndrome, a form of neuromuscular paralysis occurs at a rate of 1 per 1,000 patients.
Conversely, Campylobacter, such as C. jejuni, colonizes poultry as a commensal, that is, without producing any overt signs of disease. Similarly, Campylobacter, such as C jejuni may colonize other feed animals as a commensal as well. However, infected cattle may suffer from diarrhea, weight loss, and suffer from fever and increased heart rate.
The methods of the third and fourth aspects of the invention may be used to stimulate an immune response against or to reduce intestinal colonization of any species of
Campylobacter. In preferred embodiments, the methods of the third and fourth aspects of the invention are used to stimulate an immune response against or to reduce intestinal colonization of varied species of Campylobacter including but not limited to C. jejuni, C. coli, C. lari and/or C. upsaliensis.
As used herein, methods for "stimulating an immune response" result in one or more effects (e.g., maturation, proliferation, direct- or cross-presentation of antigen, gene expression profile) on cells of either the innate or adaptive immune system. For example, the immune response may involve, effect, or be detected in innate immune cells such as, for example, dendritic cells, monocytes, macrophages, natural killer cells, and/or granulocytes (e.g., neutrophils, basophils or eosinophils). The immune response may also involve, effect, or be detected in adaptive immune cells including, for example, lymphocytes (e.g., T cells and/or B cells). The immune response may be observed by detecting such involvement or effects including, for example, the presence, absence, or altered (e.g., increased or decreased) expression or activity of one or more immunomodulators. The immune response may stimulate a de novo or previously undetected antibody response, or enhance or suppress an existing response against the immunogen by, for example, causing an increased antibody response (e.g., amount of antibody, increased affinity/avidity) or an increased cellular response (e.g., increased number of activated T cells, and/or increased affinity/avidity of T cell receptors. In certain embodiments, the immune response may be protective, meaning that the immune response may be capable of preventing initiation or continued infection of or growth within a host and/or by eliminating C. jejuni from the host. In some instances, elimination of an agent from the host may mean that the method is therapeutic, in that the method is used to treat a subject already infected with C. jejuni. When the method is therapeutic, the method may comprise treating a C. jejuni infection, wherein "treating" means accomplishing one or more of the following: (a) reducing the severity of the infection; (b) limiting or preventing development of symptoms characteristic of the infection; (c) inhibiting worsening of symptoms characteristic of the infection; (d) limiting or preventing recurrence of the disorder(s) in subjects that have previously had the infection; and (e) limiting or preventing recurrence of symptoms in subjects that were previously symptomatic for the infection.
As used herein, "reducing Campylobacter intestinal colonization" means reducing a level of intestinal colonization that would be observed in the subject in the absence of administering the one or more immunogenic compositions of the invention. Any level of reduction is beneficial in reducing Campylobacter transmission, for example, from poultry to a human consuming the poultry. In one embodiment, the reduction comprises at least 10% reduction in intestinal colonization compared to intestinal colonization in the absence of treatment; in various further embodiments, the intestinal colonization is reduced by at least 20%, 25%, 50%, 75%, 80%, 85%, 90%, 95%, or more compared to intestinal colonization in the absence of treatment. Techniques for quantifying a level of Campylobacter intestinal colonization are well known in the art and include, but are not limited to, examining cecal or fecal levels of Campylobacter. Techniques for determining fecal contamination of
Campylobacter in production to quantify the level of Campylobacter organisms from a carcass rinse of feed animals, such as poultry, at various points of processing, such as after chilling are also established.
In preferred embodiments of the third and fourth aspects of the invention, the one or more expression vectors are present in a carrier cell, including but not limited to a non- Campylobacter bacterial carrier cell. In various non-limiting embodiments, the bacterial carrier cell is an avirulent bacterial cell selected from the group consisting of attenuated L. monocytogenes, attenuated Salmonella spp., attenuated V. cholerae, attenuated
Shigella spp., attenuated M. bovis BCG, attenuated Y. enterocolitica, attenuated B.
anthracis, S. gordonii, Lactobacillus spp., and Staphylococcus spp. In one embodiment, an attenuated Salmonella species is used. In exemplary embodiments, Salmonella that can be used include, but are not limited to Salmonella enterica strains selected from the group consisting of S. Typhimurium, S. Enteriditis, S. Heidelberg, S.Gallinarum, S. Hadar, S.
Agona, 5*. Kentucky, 5*. Typhi, 5*. Paratyphi and S. Infantis. S. Typhimurium is especially useful for vaccination purposes because the genome sequence is fully characterized and many animal studies confirm its safe medical use. Recombinant attenuated Salmonella vaccines (RASVs) have been constructed to deliver antigens from other pathogens to induce immunity to those pathogens in vaccinated hosts; see, for example, Curtiss et al, Crit Rev Immunol. 2010;30(3):255-70; 2010; Qiu et al, J. Virological Methods 188: 108; Strugnell et al, Infect. Immunol. 1992, 60:3994; Layton et al, Clinical and Vaccine Immunology march 201 1, 449- 454; Al-Ojali et al, Microbial Pathogenesis 52:326 (2012); and Wyszynska et al. (2004). In one embodiment, the RASV comprises attenuating mutations in the pmi,fur and crp genes and US 8, 133,493. In another embodiment, the RASV comprises the χ9992 vector disclosed in US 8, 133,493. In another embodiment, the RASV is one that is commercially available, such as Megan®Vacl (Lohman Animal Health, US).
The immunogenic compositions can be administered via any suitable route, including orally, as injectables, parentally, by inhalation spray, intranasally, rectally, mucosally, topically, or for administration by oral gavage or ad libitum feeding, for example, in drinking water, either as liquid solutions or suspension, in dosage unit formulations containing conventional pharmaceutically acceptable carriers, adjuvants, and vehicles. The term parenteral as used herein includes, subcutaneous, intravenous, intra-arterial, intramuscular, intrasternal, intratendinous, intraspinal, intracranial, intrathoracic, infusion techniques or intraperitoneally. Solid forms suitable for solution in, or suspension in, liquid prior to injection or other administration may also be prepared. The compositions may also, for example, be emulsified, or the encapsulated in liposomes.
In an exemplary embodiment when the subject is a non-human subject, such as chickens, turkeys, birds, sheep, pigs, cattle, dogs, or cats, the immunogenic composition are administered orally or mucosally, such as by admixing of the composition with drinking water or food, or admixing for use as a spray, to mist over the animals to uptake the immunogenic composition during grooming behavior. In exemplary embodiments where the subject is a human, the immunogenic compositions are administered orally or mucosally. However, any suitable method of administration can be used for any subject.
The immunogenic compositions are administered in a manner compatible with the dosage formulation, and in such amount and manner as will be prophylactically and/or therapeutically effective, according to what is known to the art. The quantity to be administered depends on the subject to be treated, the functional capacity of the subject's immune system, the degree of protection desired, and other factors. Precise amounts of the active ingredient required to be administered may depend on the judgment of the individual administering the immunogenic compositions and may be peculiar to each individual, but such a determination is within the level of those of skill in the art based on the teachings herein. In one embodiment, about 106 - 1010 avirulent bacterial cells per dose can be administered. In another embodiment where immunogenic proteins are administered, a suitable dosage range may, for instance, be 0.1 ug/kg-100 mg/kg body weight; alternatively, it may be 0.5 ug/kg to 50 mg/kg; 1 ug/kg to 25 mg/kg, or 5 ug/kg to 10 mg/kg body weight.
The immunogenic compositions may be administered in a single dose or in multiple dosages as determined most appropriate, such as a two dose schedule, for example two to eight weeks apart; or a multiple dose schedule or in combination with other vaccines. A multiple dose schedule is one in which a primary course of vaccination may include 1 to 10 or more separate doses, followed by other doses administered at subsequent time intervals as required to maintain and/or reinforce the immune response, e.g., at 1 to 4 months for a second dose, and if needed, a subsequent dose(s) after several months.
Example 1 Immunogenic compositions based on Cj0988c
The DNA and protein sequence of Cj0988c are provided in SEQ ID NO: 1 and SEQ ID NO:2, respectively.
Salmonella Tvphimurium vector y9992:
The vector used was a Salmonella Typhimurium vector χ9992 (Curtiss et al, 2009) which contains eight mutations, with three of the mutations attenuating: the pmi, fur, and crp genes.
1) A m -2426-Eliminates phosphomannose isomerase which ceases LPS-0 antigen synthesis in the absence of mannose; 2) Agmd-fcl-Reduces biofilm formation and prevents the formation of colonic acid which aids in the survival of asdA mutants;
3) Δα5<£4 7-Deletion of a gene encoding an enzyme necessary for diaminopimelic acid (DAP). Strain requires supplemental DAP until the introduction of the plasmid. Eliminates need for antibiotic resistance markers;
4) APf r77:: T araC PBAD/W-TT araC PBAD C2 APcrp527::TT araC PBAD crp -Allows fur and crp gene expression only in the presence of arabinose, producing pYA3493 (Figure 1), a strain which is maximally invasive prior to display of attenuated phenotype following cell division;
5) ArelA198: :araCPBAD/ac/TT - eliminates relA gene to uncouple growth from protein synthesis and provides arabinose-dependent synthesis of the Lacl repressor to confer regulated delayed in vivo synthesis of recombinant proteins, and
6) AaraE25 AaraBAD23- Eliminates the ability of Salmonella to metabolize arabinose.
Allows retention of arabinose in the cytoplasm without use.
The vector plasmid pYA3493 contains the asd gene to compliment the chromosomal AasdA27 mutation and ensure that the plasmid will not be lost in vivo. The plasmid also fuses the expressed product to a β-lactamase signal sequence for periplasmic secretion of the protein. Finally, the plasmid has a strong promoter (-35 region of trp promoter/- 10 lac) in Ptrc (Fig. 1). Use of this plasmid does not confer antibiotic resistance to the Salmonella vaccine.
The vector that we used for the amplification of the plasmid with the inserted C. jejuni gene is E. coli χ6212. This strain is Asd- allowing amplification of the plasmid, which is then extracted and electroporated into Salmonella χ9992.
Gene Cj0998c expresses a hypothetical protein that is part of the outer membrane of the bacterium. Gene Cj0998c was cloned individually into plasmid pYA3493 and expressed from the Salmonella vector χ9992.
A. Cloning of the Cj0998c gene into the Salmonella vector
The Salmonella strain (χ9992) used as the vector has three different mutations which results in its attenuation. The strain is safe and immunogenic and acts as a phenotypically wild-type strain at the time of immunization but becomes attenuated after colonization of host tissues. The plasmid contains the asd gene which provides a marker for laboratory differentiation using media not containing DAP to grow plasmid-containing strains. Since this gene is required for the survival of the vector without DAP, the plasmid is maintained in the vector during in vivo colonization. Gene Cj0998c was cloned into Salmonella χ9992. Essentially, primers to each gene were designed and the gene amplified using PCR. Each gene product was inserted into plasmid pYA3493 (asd+), cloned into E. coli χ6212 (asd-) and cultured for amplification. Following growth, the plasmid was extracted from the E. coli strain, cloned into the Salmonella Typhimurium vector, and the transformants plated on LB media minus DAP, cultured at 37°C on LB agar, harvested, and stored frozen at -80°C.
Confirmation that the gene was present in the vector was accomplished through a plasmid extraction and sequence analysis of genes following PCR and gel electrophoresis.
B. Salmonella growth in vitro
The Salmonella vector expressing the Cj0998c protein and the Salmonella empty vector were grown in Luria Bertani (LB) broth supplemented with 0.1% glucose, 0.05% mannose, and 0.1% arabinose for 24 h at 37°C with shaking. Following incubation, the overnight cultures were pelleted and re-suspended in PBS to a final concentration of lxlO10 CFU/ml.
C. Vaccination of poultry
Vaccination of chickens, twice, with the vector expressing the Cj0988c protein reduced cecal numbers of C. jejuni in birds an average of 2.5 logs CFU (geomean of 3.0 logs CFU) when compared to the cecal numbers of non- vaccinated control birds (Table 1). One outlier of 1.00E+07 (highlighted cell, Table 3) was present in 31 birds examined. Cornish X Rock chickens were obtained from McMurray Hatchery (IA) and randomly assigned to isolated groups. The chickens were screened for the fecal presence of C. jejuni and/or Salmonella. The chickens were vaccinated orally, at days 10 and 16, with 1 ml of the Salmonella vector expressing the Cj0988 protein (~1010 CFU/ml) or the Salmonella empty vector and challenged with 105 CFU/ml of C. jejuni strain NCTC1 1168 10 days after the second vaccination. Prior to vaccination and challenge, chickens were fasted for 8 hours. Food was returned one hour post vaccination/challenge. Aside from this period, food and water were available ad libitum. The chickens were necropsied 10 days after challenge infection. Cecal contents were ten- fold diluted and direct plated onto modified Campy Cefex agar plates incubated for 48 h at 10% CO2 microaerophilic conditions for enumeration of Campylobacter. Table 1. Combined data of C. jejuni vaccination
trials 1 & 2
Figure imgf000025_0001
Table 2. Vaccination Trial 1 - Ten day old Table 3. Vaccination Trial 2 - Ten day old chickens vaccinated twice with the vector chickens vaccinated twice with the vector expressing gene Cj0998c, or the Salmonella expressing gene Cj0998c (two groups), or the empty vector only (Control-EV), or non- Salmonella empty vector only (Control-EV) vaccinated controls
C. jejuni NCTC11168 Challenge - Trial 2
Figure imgf000025_0002
Figure imgf000025_0003
Example 2. Immunogenic compositions based on Q0588 and Q0248
1. The DNA and protein sequence of Q0588 are provided in SEQ ID NO: 3 and SEQ ID NO:4, respectively.
2. The DNA and protein sequence of Q0248 are provided in SEQ ID NO: 5 and SEQ ID NO: 6, respectively.
3. Mutation of C. jejuni genes
Genes Q0588 and Q0248 were cloned and mutated in C. jejuni by insertion of a chloramphenicol cassette in the center of each gene. Essentially, two sets of primers were designed for each gene to yield fragments consisting of the initial and terminal 15 bases of the gene and their associated flanking regions. These fragments were cloned into a suicide vector and positioned around the chloramphenicol acetyltransferase (CAT) gene, such that the antibiotic cassette was between the initial and terminal regions of the gene, taking up -255 bases of each gene. The vector containing the CAT gene and the flanking bases of each gene was then introduced by electroporation into C. jejuni strain M129 (Q0588) or strain NCTC1 1168 (Q0248), and the mutation transferred into the genome via a double crossover. Following electroporation the mutant strain was plated on Mueller Hinton agar containing chloramphenicol. Colonies that grew on the selective media were then confirmed by PCR to contain the cassette in the chromosome in the proper direction. Colonies were then harvested and stored at -78°C.
4. Effects of the Cj0588 mutation on broiler colonization.
The AQ0588 mutant and M129 C. jejuni parent strain were each examined for colonization traits in poultry. Four separate studies were conducted. The detection limit is less than 10 organisms. There was a significant reduction in the colonization of birds inoculated with the i\29::tlyA mutant, demonstrating that the C. jejuni Q0588 gene is important in the colonization of poultry. Study 1:
Chickens were obtained and housed as above. At 12 days, chickens were orally inoculated with 1.0 ml of approximately 1.0 x 105 per ml of viable C. jejuni M129 and the M129::tlyA mutant. At day 22 the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the M 129 : : tlyA mutant.
Table 4. Colonization of chickens with a C. jejuni parent M129 and M129::tlyA strain.
Figure imgf000026_0001
52 ND 73 1.00E+02
53 ND 74 ND
54 ND 75 2.00E+02
55 ND 76 ND
56 ND 77 4.20E+03
57 ND 78 ND
58 ND 79 ND
59 ND 80 ND
60 ND 81 1.20E+04
61 ND 82 1.00E+04
TOTAL ND Average 5.30E+03
Study 2:
Chickens were obtained and housed as above. At 14 days, birds were orally inoculated with 1.0 ml of approximately 1.0 x 106 per ml of viable C. jejuni M129 and the M129::tlyA mutant. At day 28, the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the i\29::tlyA mutant.
Table 5. Colonization of chickens with a C. jejuni parent M129 and M129::tlyA strain.
Figure imgf000027_0001
16 ND 16 3.60E+03
17 ND 17 3.10E+03
TOTAL ND Average 1.54E+05
Study 3:
Chickens were obtained and housed as above. At 14 days, birds were orally inoculated with 1.0 ml of approximately 1.0 x 108 per ml of viable C. jejuni M129 and the M129::tlyA mutant. At day 28, the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the i\29::tlyA mutant.
Table 6. Colonization of chickens with a C. jejuni parent M129 and M129::tlyA strain.
Figure imgf000028_0001
Study 4
Chickens were obtained and housed as above. At 14 days, birds were orally inoculated with 1.0 ml of approximately 1.0 x 108 per ml of viable C. jejuni M129 and the Ml29::tlyA mutant. At day 28, the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the Ml 29 .tlyA mutant. Table 7. Colonization of chickens with a C. jejuni parent M129 and M129::tlyA strain.
Figure imgf000029_0001
5. Effects of the AQ0248 mutation on broiler colonization.
The AQ0248 mutant and NCTC1 1168 C. jejuni parent strain were examined for colonization traits in poultry. Chickens were obtained and housed as above. At day 14, the birds were orally inoculated with 0.5 ml of approximately 1.0 x 105 per ml of viable C. jejuni strain NCTC1 1168 (n=31), the AQ0248 mutant strain (n=30), or served as negative controls At day 24, the birds were necropsied, and Campylobacter was enumerated as above. There was a significant reduction in the colonization of birds inoculated with the AQ0248 mutant strain. All the birds inoculated with the wild-type strain NCTC11 168 were colonized at an average of 7.42E+07 CFU/g, whereas, 3 of 30 birds (<10 CFUs) were colonized at an average of 7.33E+01 CFU/g with the C. jejuni mutant strain AQ0248 (Table 8).
Figure imgf000030_0001
6. Salmonella Typhimurium vector χ9992:
The vector used is a Salmonella Typhimurium vector χ9992, as described above.
7. Cloning and expressing C. jejuni genes into the Salmonella vector.
Both genes Q0588 and Q0248 were cloned into the vector plasmid pYA3493 and expressed from the attenuated Salmonella Typhimurium vector χ9992, as described above.
8. Vaccination of chickens with the attenuated Salmonella vector expressing Cj0588 from plasmid pYA3493. Chickens were obtained, housed, and vaccinated as above. Trial 1 chickens were orally challenged with 1.0 ml of the homologous C. jejuni strain M129 (~lxl07 CFU/ml) and trial 2 chickens were orally challenged with 1.0 ml of a heterologous strain C. jejuni NCTCl 1168 (~lxl05 CFU/ml) at 10 days after the final vaccination. Ten days post challenge, the chickens were necropsied, and Campylobacter enumerated as above.
In trial 1, a 4-log reduction of C. jejuni in cecal contents of chickens vaccinated with the vector expressing Cj0588 protein following challenge with the homologous M129 strain was observed, as compared to chickens receiving the empty vector (EV) vaccine. A 2-log reduction in C. jejuni was observed when the Cj0588 vaccinates were compared to the normal controls. In trial 2, an overall 1-log reduction of C. jejuni in cecal contents of chickens vaccinated with the Cj0588 protein was observed following challenge with a heterologous strain NCTCl 1 168, as compared to chickens receiving the EV vaccine. These trials demonstrated a significant reduction of C. jejuni in cecal contents of chickens vaccinated with the vector expressing the Cj0588 protein and challenged with the homologous strain. In addition, a 1-log reduction was seen in chickens challenged with a heterologous strain. A greater reduction would have occurred in trial 2 if not for three outliers (shaded boxes) (Table 9).
Figure imgf000031_0001
Geomean 2.47E+03 4.33E+07
Example 3. Dual vaccination using Cj0998c and Cj0588
Chickens were obtained, housed, and vaccinated as above, with the exception that each chicken received 2 ml of vaccine, 1 ml per antigen, at each vaccination. Chickens were orally challenged with 1.0 ml of the homologous C. jejuni strain NCTC1 1168 (~lxl05
CFU/ml) at 10 days after the final vaccination. Ten days post challenge the chickens were necropsied, and Campylobacter enumerated as above. One vaccinate group showed a near total ~7 log reduction in Campylobacter colonization, while colonization was reduced by ~1 log in the other group, as compared to empty vector and positive control groups.
Example 4. Water vaccination using Cj 0998c
Chickens were obtained and housed as above, with the exception that no fasting period was observed prior to vaccination and that water was removed for two hours prior to vaccination. On days 10 and 16, ~lxl010 cfu of Salmonella expressing Cj0998c (prepared as above) was added to ~2 L of water in commercially available fountain waterers. Water was returned when all vaccine had been consumed (8-12 hours). Controls received ~1χ10Λ10 cfu empty vector Salmonella or no vaccine orally. Chickens were orally challenged with 1.0 ml of the homologous C. jejuni strain NCTC1 1168 (~lxl05 CFU/ml) at 10 days after the final vaccination. At day 36, the chickens were necropsied and Campylobacter enumerated as above. Campylobacter colonization was reduced in vaccinate groups by approximately 2.5 logs as compared to empty vector and positive control groups.
References
Kong, Q., Six, D.A., Roland, K.L., Liu, Q., Gu, L., Reynolds, CM., Wang, X., Raetz,
C.R., Curtiss, R., 3rd, 201 1. Salmonella synthesizing 1-dephosphorylated [corrected] lipopolysaccharide exhibits low endotoxic activity while retaining its immunogenicity. J Immunol 187, 412-423.
Wyszynska, A., Raczko, A., Lis, M., Jagusztyn-Krynicka, E.K., 2004. Oral
immunization of chickens with avirulent Salmonella vaccine strain carrying C. jejuni
72Dz/92 cjaA gene elicits specific humoral immune response associated with protection against challenge with wild-type Campylobacter. Vaccine 22, 1379-1389. Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, et al. Foodborne illness acquired in the United States— major pathogens. Emerging infectious diseases. 201 1; 17(1):7-15. Epub 2011/01/05. doi: 10.3201/eid/1701.091 lOlpl. PubMed PMID: 21 192848.
Buzby JC, Alios BM, Roberts T. The economic burden of Campylobacter-associated
Guillain-Barre syndrome. Journal of Infectious Diseases. 1997; 176:S 192-S7. PubMed PMID: ISI:A1997YH50600023.
Pope JE, Krizova A, Garg AX, Thiessen-Philbrook H, Ouimet JM. Campylobacter reactive arthritis: a systematic review. Semin Arthritis Rheum. 2007;37(l):48-55. Epub 2007/03/16. doi: S0049-0172(07)00005-4 [pii]
Li, Y., Wang, S., Scarpellini, G., Gunn, B., Xin, W., Wanda, S.Y., Roland, K.L., Curtiss, R., 3rd, 2009, Evaluation of new generation Salmonella enterica serovar
Typhimurium vaccines with regulated delayed attenuation to induce immune responses against PspA. Proceedings of the National Academy of Sciences of the United States of America 106, 593-598.
Curtiss III, R., S-Y. Wanda, B. M. Gunn, X. Zhang, S. A. Tinge, V. Ananthnarayan, H. Mo, S. Wang, and W. Kong. 2009. Salmonella strains with regulated delayed attenuation in vivo. Infect. Immun. 77: 1071-1082.

Claims

We claim
1. An immunogenic composition, comprising one or more expression vectors comprising:
(a) at least one polynucleotide encoding a protein selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Cj0588 protein), and SEQ ID NO:6 (Cj0248 protein), or antigenic portions thereof; and
(b) a promoter operatively linked to the polynucleotide , wherein the promoter region is capable of directing expression of the encoded protein(s).
2. The immunogenic composition of claim 1, wherein the composition comprises one or more polynucleotide encoding two or more of the recited proteins, or antigenic portions thereof.
3. The immunogenic composition of claim 1, wherein the composition comprises one or more polynucleotide encoding all three of the recited proteins, or antigenic portions thereof.
4. The immunogenic composition of claim 1 , wherein the at least one polynucleotide encodes one or more proteins comprising an amino acid sequence selected from the group consisting of SEQ ID. NO. 7, SEQ ID NO:8, and SEQ ID NO:9, or antigenic portions thereof.
5. The immunogenic composition of claim 1, wherein the at least one polynucleotide encodes one or more proteins comprising an amino acid sequence selected from the group consisting of SEQ ID NO: 10-106.
6. The immunogenic composition of any one of claims 1-5, wherein the at least one polynucleotide encodes a protein comprising an amino acid sequence selected from the group consisting SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Cj0588 protein), and SEQ ID ΉΟ 6 (Q0248 protein).
7. The immunogenic composition of any one of claims 1-6, further comprising one or more expression vectors comprising at least one polynucleotide encoding a protein selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to an amino acid sequence of SEQ ID NO: 142 (Cj 1534c protein), SEQ ID NO: 108 (Cj 1656c protein), SEQ ID NO: 110 (Cj0428 protein), SEQ ID NO: 1 12 (Cj0168c protein), SEQ ID NO: 1 14 (Cj0427 protein), SEQ ID NO: 1 16 (Cj0113 protein),SEQ ID NO: 1 18 (Cj0982c protein), SEQ ID NO: 120 (Cj0921c protein), SEQ ID NO: 122 (Cj l259 protein), SEQ ID NO: 124 (Cj 1339c protein), SEQ ID NO: 126 (Cj0034c protein), SEQ ID NO: 128 (Cj0404 protein), SEQ ID NO: 130 (Cj0365c protein), SEQ ID NO: 132 (Cj0755 protein), and SEQ ID NO: 134 (CJ0420 protein), or antigenic fragments thereof.
8. The immunogenic composition of any one of claims 1-6, further comprising one or more expression vectors comprising at least one polynucleotide encoding a protein selected from the group consisting of an amino acid sequence of SEQ ID NO: 142 (Cjl534c protein), SEQ ID NO: 108 Cj 1656c protein), SEQ ID NO: 1 10 (Cj0428 protein), SEQ ID NO: 1 12 (Cj0168c protein), SEQ ID NO: 114 (Cj0427 protein), SEQ ID NO: 116 (CjOl 13 protein),SEQ ID NO: 118 (Cj0982c protein), SEQ ID NO: 120 (Cj0921c protein), SEQ ID NO: 122 (Cj l259 protein), SEQ ID NO: 124 (Cj 1339c protein), SEQ ID NO: 126 (Cj0034c protein), SEQ ID NO: 128 (Cj0404 protein), SEQ ID NO: 130 (Cj0365c protein), SEQ ID NO: 132 (Cj0755 protein), and SEQ ID NO: 134 (Cj0420 protein).
9. An immunogenic composition, comprising one or more expression vectors comprising:
(a) at least one polynucleotide encoding a protein selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO: 10-106; and
(b) a promoter operatively linked to the polynucleotide, wherein the promoter region is capable of directing expression of the encoded protein(s).
10. The immunogenic composition of any one of claims 1-9, wherein the immunogenic composition is present in an avirulent, non-Campylobacter bacterial carrier cell.
1 1. The immunogenic composition of claim 10, wherein the avirulent, non- Campylobacter bacterial carrier cell is selected from the group consisting of attenuated L. monocytogenes, attenuated Salmonella, attenuated V. cholerae, attenuated Shigella spp., attenuated M. bovis BCG, attenuated Y. enterocolitica, attenuated B. anthracis, S. gordonii, Lactobacillus spp., and Staphylococcus spp.
12. The immunogenic composition of claim 10, wherein the avirulent, non- Campylobacter bacterial carrier cell is an attenuated Salmonella.
13. An immunogenic composition, comprising
(a) one or more isolated proteins selected from the group consisting of proteins comprising an amino acid sequence at least 80 percent identical to SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Q0588 protein), and SEQ ID NO:6 (Q0248 protein), or antigenic portions thereof; and
(b) a pharmaceutically acceptable carrier.
14. The immunogenic composition of claim 13, wherein the composition comprises two or more of the recited proteins, or antigenic portions thereof.
15. The immunogenic composition of claim 13, wherein the composition comprises all three of the recited proteins, or antigenic portions thereof.
16. The immunogenic composition of any one of claims 13-15, wherein the one or more isolated proteins comprises an amino acid sequence selected from the group consisting of SEQ ID. NO. 7, SEQ ID NO:8, and SEQ ID NO:9, or antigenic portions thereof.
17. The immunogenic composition of any one of claims 13-15, wherein the one or more isolated proteins comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 10-106.
18. The immunogenic composition of any one of claims 13-16, wherein the one or more isolated proteins are have an amino acid sequence selected from the group consisting of SEQ ID NO:2 (Cj0998c protein), SEQ ID NO:4 (Cj0588 protein), and SEQ ID NO:6 (Cj0248 protein).
19. The immunogenic composition of any one of claims 13-18, further comprising one or more proteins having an amino acid sequence at least 80 percent identical to an amino acid sequence selected from the group consisting of SEQ ID NO: 142 (Cj 1534c protein), SEQ ID NO: 108 (Cj 1656c protein), SEQ ID NO: 1 10 (Cj0428 protein), SEQ ID NO: 112 (Cj0168c protein), SEQ ID NO: 1 14 (Cj0427 protein), SEQ ID NO: 116 (CjOl 13 protein),SEQ ID NO: 118 (Cj0982c protein), SEQ ID NO: 120 (Cj0921c protein), SEQ ID NO: 122 (Cj l259 protein), SEQ ID NO: 124 (Cj 1339c protein), SEQ ID NO: 126 (Cj0034c protein), SEQ ID NO: 128 (Cj0404 protein), SEQ ID NO: 130 (Cj0365c protein), SEQ ID NO: 132 (Cj0755 protein), and SEQ ID NO: 134 (Cj0420 protein), or antigenic fragments thereof.
20. The immunogenic composition of any one of claims 13-18, further comprising one or more proteins having an amino acid sequence selected from the group consisting of SEQ ID
NO: 142 (Cj 1534c protein), SEQ ID NO: 108 (Cj 1656c protein), SEQ ID NO: 110 (Cj0428 protein), SEQ ID NO: l 12 (Cj0168c protein), SEQ ID NO: l 14 (Cj0427 protein), SEQ ID NO: 116 (Cj0113 protein),SEQ ID NO: 118 (Cj0982c protein), SEQ ID NO: 120 (Cj0921c protein), SEQ ID NO: 122 (Cj 1259 protein), SEQ ID NO: 124 (Cj 1339c protein), SEQ ID NO: 126 (Cj0034c protein), SEQ ID NO: 128 (Cj0404 protein), SEQ ID NO: 130 (Cj0365c protein), SEQ ID NO: 132 (Cj0755 protein), and SEQ ID NO: 134 (Cj0420 protein).
21. The immunogenic composition of any one of claims 1-20, wherein the immunogenic composition is formulated for oral delivery or mucosal delivery.
22. The immunogenic composition of any one of claims 1-21, further comprising an adjuvant.
23. A method for stimulating an immune response against Campylobacter, comprising administering to a subject an effective amount of the immunogenic composition according to any one of claims 1 -22 to generate an immune response against Campylobacter.
24. A method for reducing Campylobacter intestinal colonization in a subject, comprising administering an amount effective of the immunogenic composition according to any one of claims 1-22 to reduce Campylobacter intestinal colonization in the subject.
25. The method of claim 23 or 24, wherein the subject is selected from the group consisting of chickens, turkeys, birds, cattle, sheep, pigs, dogs, cats, and humans.
26. The method of claim 23 or 24, wherein the subject is selected from the group consisting of chickens and turkeys.
27. The method of claim 26, wherein the administering is initially carried out by 14 days after the chicken or turkey hatches.
28. The method of any one of claims 23-27, wherein the administering comprises oral or mucosal administration.
29. The method of claim 26 or 27, wherein the administering comprises oral
administration in drinking water.
30. The method of claim 26 or 27, wherein the administering comprises administering the immunogenic composition in a spray on the subject's body.
31. The method of any one of claims 23-30, wherein the method is for inducing an immune response against, or reducing intestinal colonization of Campylobacter jejuni, Campylobacter coli, Campylobacter lari, and/or Campylobacter upsaliensis.
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