WO2013092552A1 - Plants tolerant to hppd inhibitor herbicides. - Google Patents

Plants tolerant to hppd inhibitor herbicides. Download PDF

Info

Publication number
WO2013092552A1
WO2013092552A1 PCT/EP2012/075903 EP2012075903W WO2013092552A1 WO 2013092552 A1 WO2013092552 A1 WO 2013092552A1 EP 2012075903 W EP2012075903 W EP 2012075903W WO 2013092552 A1 WO2013092552 A1 WO 2013092552A1
Authority
WO
WIPO (PCT)
Prior art keywords
hppd
plants
seq
protein
sequence
Prior art date
Application number
PCT/EP2012/075903
Other languages
French (fr)
Inventor
Fabien Poree
Bernd Laber
Nathalie Knittel-Ottleben
Gudrun Lange
Arno Schulz
Rüdiger Hain
Original Assignee
Bayer Intellectual Property Gmbh
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Bayer Intellectual Property Gmbh filed Critical Bayer Intellectual Property Gmbh
Publication of WO2013092552A1 publication Critical patent/WO2013092552A1/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8271Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
    • C12N15/8274Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for herbicide resistance
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H5/00Angiosperms, i.e. flowering plants, characterised by their plant parts; Angiosperms characterised otherwise than by their botanic taxonomy
    • A01H5/10Seeds

Definitions

  • the present invention relates to nucleic acid sequences encoding a
  • HPPD hydroxyphenylpyruvate dioxygenase
  • HPPDs are enzymes which catalyse the reaction in which para- hydroxyphenylpyruvate (abbreviated herein as HPP), a tyrosine degradation product, is transformed into homogentisate (abbreviated herein as HG), the precursor in plants of tocopherol and plastoquinone (Crouch N.P. et al. (1997), Tetrahedron, 53, 20, 6993-7010, Fritze et al. (2004), Plant Physiology 134: 1388-1400). Tocopherol acts as a membrane-associated antioxidant.
  • HPP para- hydroxyphenylpyruvate
  • HG homogentisate
  • Tocopherol acts as a membrane-associated antioxidant.
  • Plastoquinone firstly acts as an electron carrier between PSII and the cytochrome b6/f complex and secondly, is a redox cofactor for phytoene desaturase, which is involved in the biosynthesis of carotenoids.
  • nucleic acid sequences from various organisms present in the NCBI database were annotated as coding for a putative protein having an HPPD domain including the sequence disclosed under the F6EIA4 accession number given in the UniProtKB TrEMBL database as well as under the YP_00449401 1 accession number given in the NCBI protein database, as well as under AEF4121 1 accession number given in the EMBL protein database.
  • HPPD proteins and their primary sequences have been described in the state of the art, in particular the HPPD proteins of bacteria such as Pseudomonas (Ruetschi et al., Eur. J. Biochem., 205, 459-466, 1992, WO 96/38567), Kordia
  • WO201 1076892 of protists such as Blepharisma (WO201 1076882), of euryarchaeota such as Picrophilus (WO201 1076885) of plants such as Arabidopsis (WO 96/38567, Genebank AF047834), carrot (WO 96/38567, Genebank 87257), Avena sativa (WO 02/046387), wheat (WO 02/046387), Brachiaria platyphylla (WO 02/046387),
  • Cenchrus echinatus (WO 02/046387), Lolium rigidum (WO 02/046387), Festuca arundinacea (WO 02/046387), Setaria faberi (WO 02/046387), Eleusine indica (WO 02/046387), Sorghum (WO 02/046387), Coccicoides (Genebank COITRP), of Coptis japonica (WO 06/132270), Chlamydomonas reinhardtii (ES 2275365), or of mammals such as mouse or pig.
  • the corresponding sequences disclosed in the indicated references are hereby incorporated by reference..
  • HPP is a tyrosine precursor, and it is synthesized by the action of an enzyme, prephenate dehydrogenase (hereinafter referred to as PDH), which converts prephenate to HPP (Lingens et al. (1967), European J. Biochem 1 : 363-374; Sampathkumar and
  • HPPD inhibitor herbicides belong to one of these six chemical families:
  • the triketones e.g. sulcotrione [i.e. 2-[2-chloro-4-(methylsulfonyl)benzoyl]-1 ,3- cyclohexanedione], mesotrione [i.e. 2-[4-(methylsulfonyl)-2-nitrobenzoyl]-1 ,3- cyclohexanedione]; tembotrione [i.e. 2-[2-chloro-4-(methylsulfonyl)-3-[(2,2,2,-tri- fluoroethoxy)methyl] benzoyl]-1 ,3-cyclo-hexanedione]; tefuryltrione [i.e.
  • isoxazoles e.g. isoxaflutole [i.e.(5-cyclopropyl-4-isoxazolyl)[2-(methylsulfonyl)-
  • pyrazolinates e.g. topramezone [i.e.[3-(4,5-dihydro-3-isoxazolyl)-2-methyl-4- (methylsulfonyl) phenyl](5-hydroxy-1 -methyl-1 H-pyrazol-4-yl)methanone], and pyrasulfotole [i.e. (5-hydroxy-1 ,3-dimethylpyrazol-4-yl(2-mesyl-4- trifluaromethylphenyl)methanone]; pyrazofen [i.e.
  • HPPD-inhibiting herbicides can be used against grass and/or broad leaf weeds in crop plants that display metabolic tolerance, such as maize (Zea mays) in which they are rapidly degraded (Schulz et al. (1993), FEBS letters, 318, 162-166; Mitchell et al. (2001 ), Pest Management Science, Vol 57, 120-128; Garcia et al. (2000), Biochem., 39, 7501 -7507; Pallett et al. (2001 ), Pest Management Science, Vol 57, 133-142).
  • a third strategy was to mutate the HPPD in order to obtain a target enzyme which, while retaining its properties of catalysing the transformation of HPP into
  • Gly336lle, and more particularly Gly336Trp positions of the mutated amino acid are indicated with reference to the Pseudomonas HPPD
  • Gly336Trp positions of the mutated amino acid are indicated with reference to the Pseudomonas HPPD
  • WO 04/024928 the inventors have sought to increase the prenylquinone biosynthesis (e.g., synthesis of plastoquinones, tocopherols) in the cells of plants by increasing the flux of the HPP precursor into the cells of these plants. This has been done by connecting the synthesis of said precursor to the "shikimate" pathway by overexpression of a PDH enzyme. They have also noted that the transformation of plants with a gene encoding a PDH enzyme makes it possible to increase the tolerance of said plants to HPPD inhibitors.
  • WO 2009/144079 a nucleic acid sequence encoding a mutated hydroxyphenylpyruvate dioxygenase (HPPD) at position 336 of the
  • HPPD protein Pseudomonas fluorescens HPPD protein and its use for obtaining plants which are tolerant to HPPD inhibitor herbicides is disclosed.
  • WO 2002/046387 several domains of HPPD proteins originating from plants have been identified that may be relevant to confer tolerance to various HPPD inhibitor herbicides but neither in planta nor biochemical data have been shown to confirm the impact of the as described domain functions.
  • HPPD inhibitors belonging to the classes of the triketones e.g.sulcotrione, mesotrione, tembotrione, benzobicyclon and bicyclopyrone
  • the pyrazolinates e.g., topramezone and pyrasulfotole
  • N-(1 ,2,5-Oxadiazol-3-yl)benzamides WO
  • the present invention therefore relates to the generation of transgenic plants containing a gene encoding an HPPD protein obtainable or obtained from an organism belonging to family of mycobacteriaceae, and variants or mutants thereof, more especially to a gene from an organism belonging to the family of
  • mycobacteriaceae, variants or mutants thereof coding for an HPPD enzyme showing the properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which plants are less sensitive to one or more HPPD inhibitors compared to plants not containing any such HPPD encoding transgene.
  • genes from mycobacteriaceae coding for HPPD proteins were selected as excellent HPPD-inhibitor tolerant candidates due to their high divergences in the amino acids composition at positions relevant for HPPD inhibitor tolerance as determined experimentally and structurally in the HPPD protein compared to the sensitive Arabidopsis thaliana HPPD protein which was taken as the HPPD-inhibitor herbicide sensitive reference molecule.
  • the present invention therefore relates to the generation of transgenic plants containing a gene obtainable or obtained from an organism belonging to the family mycobacteriaceae, especially from the genus Amycolicicoccus, more especially obtained from the species Amycolicicoccus subflavus, variants or mutants thereof, coding for an HPPD enzyme showing the properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which are less sensitive to one or more HPPD inhibitors compared to plants not containing any such HPPD transgene.
  • this invention relates to an HPPD protein named herein "the HPPD protein of this invention” or "the Amycolici coccus HPPD protein”, which is an HPPD protein with at least 88 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particularly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22.
  • the invention relates to an HPPD protein named herein "the HPPD protein of this invention” or "the Amycolici coccus HPPD protein", which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, and in which any amino acids from position 207 to position 401 of SEQ ID No. 17 can be amended by any naturally occurring amino acid, preferably it can be any conservative substitution.
  • the invention relates to an HPPD protein named herein "the HPPD protein of this invention” or "the Amycolicicoccus HPPD protein”, which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, and having one or more of the following amino acids at the position defined by its number (relating to the number of SEQ ID No.
  • the invention relates to an HPPD protein named herein "the HPPD protein of this invention” or "the Amycolicicoccus HPPD protein", which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No.
  • Ala 232 Trp lie, Leu, Ser, Arg, Lys, His, Asp, Glu, Pro, Gly, Asn
  • the invention relates to an HPPD protein named herein "the HPPD protein of this invention” or "the Amycolicicoccus HPPD protein”, which is an HPPD protein with at least 84 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22 and at the respective positions given in the second column of Table (ii) the originally occuring amino acids can substituted by any of the amino acids listed in column 3 of Table (ii).
  • the invention relates to an HPPD protein named herein "the HPPD protein of this invention” or "the Amycolicicoccus HPPD protein”, which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, and at the respective positions given in the second column of Table (iii) the originally occuring amino acids can substituted by any of the amino acids listed in column 3 of Table (iii).
  • This invention includes a protein with amino acids substituted, deleted or added compared to the sequence of SEQ ID No. 17 from amino acid position 2 to amino acid position 401 , such as a transit peptide fusion protein, or a protein with amino acid changes in the sequence of SEQ ID No. 17 that retains the enzymatic function of an HPPD protein, and that still confers HPPD tolerance when expressed in plants, preferably HPPD tolerance of comparable range to that conferred by the protein of SEQ ID No. 17.
  • HPPD inhibitor herbicide(s) selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3- yl)benzamides, and N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides or pyrazolinates , preferably such mutant or variant which confers agronomically relevant herbicide tolerance to a host plant expressing it when an HPPD inhibitor herbicide of the class of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides
  • HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-
  • pyrazolinates particularly any one of mesotrione, tembotrione, isoxaflutole or bicyclopyrone is applied on such plants, more particularly when applied post- emergence.
  • This also includes a protein comprising an active portion of the sequence of SEQ ID No.17, which portion confers HPPD inhibitor tolerance when expressed in plants.
  • This includes a protein with substantially the same amino acid sequence as the sequence of SEQ ID No.17, such as a protein with the amino acid sequence of any one of SEQ ID Nos. 17 to 22.
  • HPPD proteins of this invention are HPPD proteins comprising the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , but wherein 1 -20, 1 -15, 1 -10, or 1 , 2, 3, 4, 5, 6, 7, 8, or 9 amino acids have been deleted or have been substituted by other amino acids, particularly such protein which retains HPPD enzymatic activity and which confers tolerance to HPPD inhibitor herbicides when expressed in a host plant.
  • HPPD protein of this invention is a Amycolici coccus HPPD protein which confers herbicide tolerance to plants when expressed in such plants, wherein such tolerance is observed to one or more HPPD inhibitor(s) selected from the group consisting of mesotrione, tembotrione, topramezone, pyrasulfotole, isoxaflutole, N-(1 ,2,5-oxadiazol-3-yl)benzamides, and N- (tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, bicyclopyrone, particularly such HPPD protein is a Amycolicicoccus subflavus, HPPD protein, such as a protein comprising the sequence of SEQ ID No. 17 from amino acid position 2 to 401 . This includes the mutant or variant HPPD proteins as described further below.
  • HPPD inhibitor(s) selected from the group consisting of mesotrione, tembotrione, topramezone, pyrasulfotole, is
  • the present invention includes and provides an antibody capable of specifically binding a substantially purified protein comprising an amino acid sequence selected from the group consisting of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, or derived sequences thereof according to amino acid replacement as disclosed in one or more of tables (i), (ii), or (iii), above.
  • a further aspect of the invention concerns antibodies, single-chain antigen binding molecules, or other proteins that specifically bind to one or more of the protein or peptide molecules of the invention and their homologs, fusions or fragments.
  • the antibody specifically binds to a protein having the amino acid sequence set forth in SEQ ID Nos. 17-22 or a fragment thereof, or derived sequences thereof according to amino acid replacement as disclosed in one or more of tables (i), (ii), or (iii), above.
  • the antibody specifically binds to a fusion protein comprising an amino acid sequence selected from the amino acid sequence set forth in SEQ ID Nos. 17-22 or a fragment thereof. In another embodiment the antibody specifically binds to a fusion protein comprising an amino acid sequence selected from the amino acid sequence set forth in SEQ ID Nos. 17-22 or a fragment thereof, or derived sequences thereof according to amino acid replacement as disclosed in one or more of tables (i), (ii), or (iii), above.
  • Antibodies of the invention may be used to quantitatively or qualitatively detect the protein or peptide molecules of the invention, or to detect post translational modifications of the proteins. As used herein, an antibody or peptide is said to
  • this invention relates to an HPPD nucleic acid or DNA, named herein "the HPPD nucleic acid/DNA of this invention", which is a nucleic acid or DNA encoding an HPPD of this invention as defined above.
  • nucleotide position 139 to nucleotide position 1341
  • sequence of SEQ ID No. 12 from nucleotide position 382 to nucleotide position 1584, or the sequence of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581
  • sequence of SEQ ID No. 16 from nucleotide position 376 to nucleotide position 1578
  • sequence of SEQ ID No. 29 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 30 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 31 from nucleotide position 4 to 1206, or the sequence of SEQ ID No.
  • the nucleic acid constituting the test sequence preferably has a TM (melting/dissociating temperature) within 10° C. of that of the sequence selected from the group consisting of SEQ ID Nos1 , 2, 3, 12, 1 5, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37.
  • the TM values of the sequences are preferably within 5° C of each other. More preferably the hybridization is performed under relatively stringent hybridization conditions as defined below.
  • a denatured test or inventive sequence is preferably first bound to a support and hybridization is effected for a specified period of time at a temperature of between 60 and 65° C in 5xSSC containing 0.1 % SDS followed by rinsing of the support at the same temperature but with O.l xSSC.
  • the hybridization involves a fragment of the sequence selected from the group consisting of SEQ ID Nos. 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37 the hybridization conditions may be less stringent, as will be obvious to the skilled person.
  • HPPD DNA of this invention are DNA sequences encoding an HPPD protein of the invention which DNA sequences have been adapted for expression in microorganisms or plants, such as by replacing native codons by codons more preferred in a host cell, or wherein certain restriction sites have been added or removed for ease of cloning, or DNA sequence with a certain number of added, replaced or deleted nucleotides.
  • This also includes isolated DNA sequences and variant, mutant or synthetic DNAs or nucleic acids as described further below.
  • the Amycolici coccus HPPD DNA of this invention is expressed in plants under the control of a promoter that allows expression of exogenous genes in plants.
  • a signal transit peptide such as a transit peptide is located, preferably a plastid transit peptide, such as a chloroplast transit peptide of about 30 to about 125 amino acids, preferably 125 amino acids, most preferably present as a double transit peptide, such as an optimized transit peptide of which the first part is originated from sunflower (Helianthus annuus) and the second part from Zea mays (described in US patent 5,188,642) or a plastid transit peptide of that of the plant ribulose biscarboxylase/oxygenase small subunit (RuBisCO ssu), where appropriate including a few amino acids of the N-terminal part of the mature RuBisCO ssu (EP
  • this invention includes a DNA encoding an HPPD protein of this invention which is derived or is obtainable from SEQ ID No. 1 and is optimized for the expression in E. coli, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined).
  • this invention includes a DNA encoding an HPPD protein of this invention which is derived from SEQ ID No. 1 and is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 (including the positions defined).
  • this invention includes a DNA encoding an HPPD protein of this invention which is derived from SEQ ID No. 1 and is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 37 from nucleotide position 376 to nucleotide position 1578 (including the positions defined).
  • this invention includes a DNA encoding an HPPD protein of this invention which is derived from SEQ ID No. 1 and is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 29, 30, 31 , 32, 33, 34, 35, or 36 from nucleotide position 4 to nucleotide position 1206 (including the positions defined).
  • the HPPD of the invention such as the HPPD comprising the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to amino acid position 401 , or the HPPD comprising the amino acid sequence of any one of SEQ ID Nos.
  • HPPD inhibitor herbicides selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazolinates, or, preferably less sensitve to one or more HPPD inhibitor herbicide(s) selected from the group consisting of isoxaflutole, tembotrione, mesotrione, sulcotrione, pyrasulfotole, topramezone, 2-cyano-3-cyclopropyl-1 -(2-S02CH3-4-CF3phenyl)propane-1 ,3-dione and 2-cyano-3-cyclopropyl-1 -(2-S02CH 3 -4-2,3 CI2 phenyl)propane-1
  • HPPD inhibitor herbicides selected from the group consisting of isoxazo
  • this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in E. coli, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N- (triazol-3-yl)arylcarboxamides or pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole
  • this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole,
  • this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 29, 30, 31 , 32, 33, 35 or 36 from nucleotide position 4 to nucleotide position 1206
  • HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, and
  • pyrazoiinates preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate and benzofenap.
  • this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 37 from nucleotide position 376 to nucleotide position 1578 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazoiinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole,
  • this invention relates to plants, plant parts, plant cells, and progenies of these plants comprising a DNA encoding an HPPD protein of the invention which is optimized for the expression in E. coli, or is optimized for the expression in plants such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined) or of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 or of SEQ ID Nos. 29, 30, 31 , 32, 33, 34, 35, or 36 from nucleotide position 4 to 1206 (including the positions defined) or of SEQ ID No.
  • nucleotide position 376 to 1578 which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, and pyrazoiinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate and benzofenap..
  • HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3
  • Such plants include but are not limited to field crops, fruits and vegetables such as canola, sunflower, tobacco, sugarbeet, cotton, maize, wheat, barley, rice, sorghum, tomato, mango, peach, apple, pear, strawberry, banana, melon, potato, carrot, lettuce, cabbage, onion, soya spp, sugar cane, pea, field beans, poplar, grape, citrus, alfalfa, rye, oats, turf and forage grasses, flax and oilseed rape, and nut producing plants.
  • fruits and vegetables such as canola, sunflower, tobacco, sugarbeet, cotton, maize, wheat, barley, rice, sorghum, tomato, mango, peach, apple, pear, strawberry, banana, melon, potato, carrot, lettuce, cabbage, onion, soya spp, sugar cane, pea, field beans, poplar, grape, citrus, alfalfa, rye, oats, turf and forage grasses,
  • this invention relates to plants, plant parts, plant cells, and progenies of these plants comprising a DNA encoding an HPPD protein of the invention which is optimized for the expression in E. coli, or optimized for the expression in plants such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined) or of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 (including the positions defined) of SEQ ID No.
  • nucleotide position 4 to nucleotide position 1206 (including the positions defined), or of SEQ ID No. 37 from nucleotide position 376 to nucleotide position 1 578 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione,
  • the HPPD protein of the invention comprises the sequence of SEQ ID No. 20, SEQ ID No. 21 or SEQ ID No. 22 all of which are less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones (named triketone HPPD inhibitor), such as
  • tembotrione sulcotrione mesotrione, bicyclopyrone, tefuryltrione, particularly tembotrione, or from the group consising of diketonitrile (like isoxaflutole) or from the group consisting of pyrazolinates (named pyrazolinate HPPD inhibitor), such as pyrasulfotole, pyrazolate, topramezone, benzofenap compared to the endogenous unmutated HPPD of a plant, particularly the host plant wherein such HPPD of the invention is expressed or is to be expressed.
  • pyrazolinate HPPD inhibitor named pyrazolinate HPPD inhibitor
  • the enzymatic activity of HPPD proteins can be measured by any method that makes it possible either to measure the decrease in the amount of the HPP or O2 substrates, or to measure the accumulation of any of the products derived from the enzymatic reaction, i.e. homogentisate or CO2.
  • the HPPD activity can be measured by means of the method described in Garcia et al. (1997), Biochem. J. 325, 761 -769 or Garcia et al. (1999), Plant Physiol. 1 19, 1507-1516, which are incorporated herein by reference.
  • an HPPD inhibitor of the class/group of triketones means an HPPD inhibitor having a triketone skeleton.
  • triketone HPPD inhibitor one can cite the molecules sulcotrione [i.e.
  • an HPPD of the class of pyrazolinates means an HPPD inhibitor having a pyrazole radical.
  • pyrazolinates HPPD inhibitor one can cite the molecules topramezone [i.e. [3- (4,5-dihydro-3-isoxazolyl)-2-methyl-4-(methylsulfonyl)phenyl](5-hydroxy-1 -methyl-1 H- pyrazol-4-yl)methanone] and pyrasulfotole [(5-hydroxy-1 ,3-dimethylpyrazol-4-yl(2- mesyl-4-trifluaromethylphenyl)methanone].
  • the present invention also relates to a nucleic acid sequence, particularly an isolated DNA, preferably a plant-expressible chimeric gene, which encodes the
  • Amycolici coccus HPPD of the invention and adapted sequences thereof.
  • the present invention also relates to a nucleic acid sequence encoding an HPPD enzyme of this invention which retains its properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which is less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl ⁇ - or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or from the group consisting of pyrazolinates, such as pyrasulfotole and topramezone, tefuryltrione, bicyclopyrone, benzobicyclon than the endogenous unmutated plant HPPD, and of which the encoded amino acid sequence shows a sequence identity to SEQ ID No.
  • the nucleic acid sequence of the invention encodes an HPPD enzyme which is less sensitive to one or more HPPD inhibitor herbicides belonging to the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione, mesotrione, bicyclopyrone, and tefuryltrione, belonging to the group consisting of isoxazoles, such as isoxaflutole, belonging to the group consisting of pyrazolinates (named pyrazolinate HPPD inhibitor), such as pyrasulfotole, pyrazolate, topramezone, benz
  • nucleic acid sequence is understood as being a nucleotide sequence which can be of the DNA or RNA type, preferably of the DNA type, and in particular double-stranded, whether it be of natural or synthetic origin, in particular a DNA sequence in which the codons which encode the HPPD according to the invention have been optimized in accordance with the host organism in which it is to be expressed (e.g., by replacing codons with those codons more preferred or most preferred in codon usage tables of such host organism or the group to which such host organism belongs, compared to the original or source organism).
  • isolated nucleic acid/DNA/protein refers to a nucleic acid
  • acid/DNA/protein which is not naturally occurring (such as an artificial or synthetic DNA with a different nucleotide sequence than the naturally occurring DNA, or a modified protein) or which is no longer in the natural environment wherein it was originally present, e.g., a DNA coding sequence associated with a heterologous regulatory element (such as a bacterial coding sequence operably linked to a plant- expressible promoter) in a chimeric gene, a DNA transferred into another host cell, such as a transgenic plant cell.
  • a heterologous regulatory element such as a bacterial coding sequence operably linked to a plant- expressible promoter
  • HPPD which is less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, isoxazoles, and pyrazolinates
  • the tolerance level measurement is analyzed using the method extensively described in WO 2009/14407 as described below using a N-(1 ,2,5-oxadiazol-3-yl)benzamides, N- (tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, isoxazoles, or pyrazolinates HPPD inhibitor, particularly less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of tembotrione, mesotrione
  • the coding regions encoding HPPD comprise a nucleotide sequence encoding proteins with the amino acid sequences as set forth in SEQ ID Nos 17, 18, 19, 20, 21 , and 22 such as the nucleotide sequences of SEQ ID Nos 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37.
  • nucleotide sequences including insertions, deletions and substitutions thereof may be also be used to the same effect.
  • homologues to the mentioned nucleotide sequences from species different from Blepharisma can be used.
  • a protein with "substantially the same amino acid sequence" to a protein as described in present invention refers to a protein with at least 90 %, particularly at least 95 %, preferably at least 97 % sequence identity with a protein according to the invention, wherein the percentage sequence identity is determined by using the "blosum62 scoring matrix" in the GAP program of the Wisconsin package of GCG (Madison, Wisconsin, USA), version 10.0 (GCG defaults used).
  • GCG Garnier scoring matrix
  • sequence identity when related to DNA sequences, is determined by using the "nwsgapdna scoring matrix" in the GAP program of the Wisconsin package of GCG (Madison, Wisconsin, USA), version 10.0 (GCG defaults used).
  • sequence identity of two related nucleotide or amino acid sequences, expressed as a percentage, refers to the number of positions in the two optimally aligned sequences which have identical residues (x100) divided by the number of positions compared.
  • a gap i.e. a position in an alignment where a residue is present in one sequence but not in the other, is regarded as a position with non-identical residues.
  • the alignment of the two sequences is performed by the Needleman and Wunsch algorithm .
  • the computer-assisted sequence alignment above can be conveniently performed using standard software program such as GAP which is part of the Wisconsin Package Version 10.1 (Genetics Computer Group, Madision, Wisconsin, USA) using the default scoring matrix with a gap creation penalty of 50 and a gap extension penalty of 3.
  • Nucleotide sequences homologous to the nucleotide sequences encoding an HPPD enzyme according to the invention may be identified by in silico analysis of genomic sequence data.
  • Homologous nucleotide sequence may also be identified and isolated by hybridization under stringent conditions using as probes identified nucleotide sequences encoding HPPD enzymes according to the invention or parts thereof. Such parts should preferably have a nucleotide sequence comprising at least 40 consecutive nucleotides from the coding region of HPPD encoding genes sequences according to the invention, preferably from the coding region of SEQ ID No. 1 , SEQ ID No. 2,
  • SEQ ID No. 3 SEQ ID No. 12, SEQ ID No. 15, SEQ ID No. 16, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31 , SEQ ID No. 32, SEQ ID No. 33, SEQ ID No. 34,
  • the probes may however comprise longer regions of nucleotide sequences derived from the HPPD encoding nucleic acids, such as about 50, 60, 75, 100, 200 or 500 consecutive nucleotides from any of the mentioned HPPD genes.
  • the probe should comprise a nucleotide sequence coding for a highly conserved region which may be identified by aligning the different HPPD proteins.
  • Stringent hybridization conditions as used herein means that hybridization will generally occur if there is at least 95% and preferably at least 97% sequence identity between the probe and the target sequence.
  • Examples of stringent hybridization conditions are overnight incubation in a solution comprising 5xSSC (150 mM NaCI, 15 mM tri sodium-citrate), 50 mM sodium phosphate (pH 7.6), 5x Denhardt's solution, 10% dextran sulfate, and 20 pg/ml denatured, sheared carrier DNA such as salmon sperm DNA, followed by washing the hybridization support in 0.1 x SSC at approximately 65 °C, preferably twice for about 10 minutes.
  • Other hybridization and wash conditions are well known and are exemplified in Sambrook et al, Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor, NY (1989), particularly chapter 1 1 .
  • Such variant sequences may also be obtained by DNA amplification using
  • oligonucleotides specific for HPPD genes encoding enzymes as primers such as but not limited to oligonucleotides comprising about 20 to about 50 consecutive nucleotides selected from the nucleotide sequences of SEQ ID Nos. 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 33, 34, 35, 36, and 37 or their complement.
  • variant HPPD enzymes which are amino acid sequences similar to the HPPD amino acid sequence of SEQ ID No. 17 wherein one or more amino acids have been inserted, deleted or substituted.
  • variants of an amino acid sequence refer to those polypeptides, enzymes or proteins which have a similar catalytic activity as the amino acid sequences described herein, notwithstanding any amino acid substitutions, additions or deletions thereto.
  • the variant amino acid sequence has a sequence identity of at least about 84%, or 85 or 90% or 95% with the amino acid sequence of SEQ ID No. 17.
  • a polypeptide comprising the variant amino acid sequence has HPPD enzymatic activity.
  • substitutions encompass amino acid alterations in which an amino acid is replaced with a different naturally-occurring or a non-conventional amino acid residue. Such substitutions may be classified as "conservative', in which an amino acid residue contained in an HPPD protein of this invention is replaced with another naturally- occurring amino acid of similar character, for example Gly* *Ala, Val ⁇ >lle ⁇ >Leu, Asp ⁇ *Glu, Lys ⁇ >Arg, Asn ⁇ >Gln or Phe* *Trp ⁇ >Tyr.
  • Substitutions encompassed by the present invention may also be "non-conservative", in which an amino acid residue which is present in an HPPD protein of the invention is substituted with an amino acid with different properties, such as a naturally-occurring amino acid from a different group (eg. substituting a charged or hydrophobic amino acid with alanine.
  • Amino acid substitutions are typically of single residues, but may be of multiple residues, either clustered or dispersed. Amino acid deletions will usually be of the order of about 1 -10 amino acid residues, while insertions may be of any length. Deletions and insertions may be made to the N-terminus, the C-terminus or be internal deletions or insertions.
  • Similar amino acids refers to amino acids that have similar amino acid side chains, i.e. amino acids that have polar, non-polar or practically neutral side chains.
  • Non- similar amino acids refers to amino acids that have different amino acid side chains, for example an amino acid with a polar side chain is non-similar to an amino acid with a non-polar side chain.
  • Polar side chains usually tend to be present on the surface of a protein where they can interact with the aqueous environment found in cells (“hydrophilic" amino acids).
  • amino acids that have polar side chains are arginine, asparagine, aspartate, cysteine, glutamine, glutamate, histidine, lysine, serine, and threonine (all hydrophilic, except for cysteine which is hydrophobic).
  • amino acids that have non-polar side chains are alanine, glycine, isoleucine, leucine, methionine, phenylalanine, proline, and tryptophan (all hydrophobic, except for glycine which is neutral).
  • the invention also relates to the use, in a method for transforming plants, of a nucleic acid which encodes an HPPD according to the invention as a marker gene or as a coding sequence which makes it possible to confer to the plant tolerance to herbicides which are HPPD inhibitors, and the use of one or more HPPD inhibitors on plants comprising a nucleic acid sequence encoding a HPPD according to the invention.
  • HPPD inhibitors to be used are selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N- (triazol-3-yl)arylcarboxamides, triketones or pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, sulcotrione, bicyclopyrone, and tefuryltrione. It is, of course, understood that this sequence can also be used in combination with (an) other gene marker(s) and/or sequence(s) which encode(s) one or more protein with useful agricultural properties.
  • weeds pesticidial management unwanted plants
  • An ideal treatment would be one which could be applied to an entire field but which would eliminate only the unwanted plants while leaving the crop plants unaffected.
  • One such treatment system would involve the use of crop plants which are tolerant to an herbicide so that when the herbicide is sprayed on a field of herbicide-tolerant crop plants, the crop plants would continue to thrive while non-herbicide-tolerant weeds are killed or severely damaged.
  • such treatment systems would take advantage of varying herbicide properties so that weed control could provide the best possible combination of flexibility and economy.
  • herbicides have different longevities in the field, and some herbicides persist and are effective for a relatively long time after they are applied to a field while other herbicides are quickly broken down into other and/or non-active compounds.
  • An ideal treatment system would allow the use of different herbicides so that growers could tailor the choice of herbicides for a particular situation.
  • the HPPD protein or gene of the invention is advantageously combined in plants with other genes which encode proteins or RNAs that confer useful agronomic properties to such plants.
  • genes which encode proteins or RNAs that confer useful agronomic properties on the transformed plants mention can be made of the DNA sequences encoding proteins which confer tolerance to one or more herbicides that, according to their chemical structure, differ from HPPD inhibitor herbicides, and others which confer tolerance to certain insects, those which confer tolerance to certain diseases, DNAs that encode RNAs that provide nematode or insect control, etc.
  • EPSPS EPSPS which confer tolerance to the herbicides which have EPSPS as a target
  • sequence encoding these enzymes is advantageously preceded by a sequence encoding a transit peptide, in particular the "optimized transit peptide" described in US Patent 5,510,471 or 5,633,448.
  • plants being tolerant to glyphosate and at least one ALS
  • acetolactate synthase inhibitor More specifically plants containing genes encoding a GAT (Glyphosate-N-Acetyltransferase) polypeptide and a polypeptide conferring resistance to ALS inhibitors are disclosed.
  • GAT Glyphosate-N-Acetyltransferase
  • the Cry1 A-type proteins or toxic fragments thereof preferably the CrylAc protein or hybrids derived from the Cry1 Ac protein (e.g., the hybrid Cry1Ab-Cry1 Ac protein described in US 5,880,275) or the Cryl Ab or Bt2 protein or insecticidal fragments thereof as described in EP451878, the Cry2Ae, Cry2Af or Cry2Ag proteins as described in WO02/057664 or toxic fragments thereof, the Cry1 A.105 protein described in WO 2007/140256 (SEQ ID No.
  • any variants or mutants of any one of these proteins differing in some (1 -10, preferably 1 -5) amino acids from any of the above sequences, particularly the sequence of their toxic fragment, or which are fused to a transit peptide, such as a plastid transit peptide, or another protein or peptide, is included herein.
  • the present invention also relates to a chimeric gene (or expression cassette) which comprises a coding sequence as well as heterologous regulatory elements, at the 5' and/or 3' position, at least at the 5 ' position, which are able to function in a host organism, in particular plant cells or plants, with the coding sequence containing at least one nucleic acid sequence which encodes an HPPD as previously defined.
  • the present invention relates to a chimeric gene as previously described, wherein the host organism is selected from bacteria, yeast, Pichia, fungi, baculovirus, in vitro cells, protoplasts, plant cells, plants, plant parts, and plant seeds thereof.
  • the present invention relates to a chimeric gene as previously described, wherein the chimeric gene contains in the 5 ' position of the nucleic acid sequence which encodes a HPPD according to the invention, a nucleic acid sequence which encodes a plant transit peptide, with this sequence being arranged between the promoter region and the sequence encoding the HPPD according to the invention so as to permit expression of a transit peptide/HPPD fusion protein.
  • the present invention relates to the use of HPPD inhibitor herbicides on plants, plant parts, or plant seeds comprising HPPD tolerant gene according to the invention, or to the use of HPPD inhibitor herbicides on soil where such plants, plant parts or seeds are to be grown or sown, either alone or in combination with one or more other known herbicides acting in a different matter to HPPD inhibitors.
  • the employed HPPD inhibitor herbicide is selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides,
  • triketones such as tembotrione, sulcotrione mesotrione, bicyclopyrone, tefuryltrione, particularly tembotrione, of the class diketone such as diketonitrile of the class of isoxazoles such as isoxaflutole or of the class of pyrazolinates (named pyrazolinate HPPD inhibitor), such as pyrasulfotole, pyrazolate, topramezone, benzofenap, even more specifically present invention relates to the application of tembotrione, mesotrione, diketonitrile, bicyclopyrone, tefuryltrione, benzofenap, pyrasulfotole, pyrazolate and sulcotrione to such HPPD inhibitor tolerant plants, plant parts or plant seeds.
  • triketone HPPD inhibitor such as tembotrione, sulcotrione mesotrione, bicyclopyrone, tefuryltri
  • promoter sequence As a regulatory sequence which functions as a promoter in plant cells and plants, use may be made of any promoter sequence of a gene which is naturally expressed in plants, in particular a promoter which is expressed especially in the leaves of plants, such as for example "constitutive" promoters of bacterial, viral or plant origin, or "light- dependent" promoters, such as that of a plant ribulose-biscarboxylase/oxygenase (RuBisCO) small subunit gene, or any suitable known promoter-expressible which may be used.
  • a promoter sequence of a gene which is naturally expressed in plants in particular a promoter which is expressed especially in the leaves of plants, such as for example "constitutive" promoters of bacterial, viral or plant origin, or "light- dependent" promoters, such as that of a plant ribulose-biscarboxylase/oxygenase (RuBisCO) small subunit gene, or any suitable known promoter-expressible which may be used.
  • promoters of plant origin mention will be made of the histone promoters as described in EP 0 507 698 A1 , the rice actin promoter (US 5,641 ,876), or a plant ubiquitin promoter (US 5,510,474).
  • promoters of a plant virus gene mention will be made of that of the cauliflower mosaic virus (CaMV 19S or 35S, Sanders et al. (1987), Nucleic Acids Res. 15(4): 1543-58.), the circovirus (AU 689 31 1 ) or the Cassava vein mosaic virus (CsVMV, US 7,053,205).
  • a promoter sequence specific for particular regions or tissues of plants can be used to express the HPPD proteins of the invention, such as promoters specific for seeds (Datla, R. et al. (1997), Biotechnology Ann. Rev. 3, 269-296), especially the napin promoter (EP 255 378 A1 ), the phaseolin promoter, the glutenin promoter, the helianthinin promoter (WO 92/17580), the albumin promoter (WO 98/45460), the oleosin promoter (WO 98/45461 ), the SAT1 promoter or the SAT3 promoter (PCT/US98/06978).
  • promoters specific for seeds such as promoters specific for seeds (Datla, R. et al. (1997), Biotechnology Ann. Rev. 3, 269-296), especially the napin promoter (EP 255 378 A1 ), the phaseolin promoter, the glutenin promoter, the helianthinin promoter (WO 92/17580), the albumin promoter (WO
  • an inducible promoter advantageously chosen from the phenylalanine ammonia lyase (PAL), HMG-CoA reductase (HMG), chitinase, glucanase, proteinase inhibitor (PI), PR1 family gene, nopaline synthase (nos) and vspB promoters (US 5 670 349, Table 3), the HMG2 promoter (US 5 670 349), the apple beta-galactosidase (ABG1 ) promoter and the apple aminocyclopropane carboxylate synthase (ACC synthase) promoter (WO 98/45445).
  • promoter use may also be made, in combination with the promoter, of other regulatory sequences, which are located between the promoter and the coding sequence, such as transcription activators ("enhancers"), for instance the translation activator of the tobacco mosaic virus (TMV) described in Application WO 87/07644, or of the tobacco etch virus (TEV) described by Carrington and Freed (1990), J. Virol. 64: 1 590-1597, for example, or introns such as the adhl intron of maize or intron 1 of rice actin.
  • transcription activators for instance the translation activator of the tobacco mosaic virus (TMV) described in Application WO 87/07644, or of the tobacco etch virus (TEV) described by Carrington and Freed (1990), J. Virol. 64: 1 590-1597
  • introns such as the adhl intron of maize or intron 1 of rice actin.
  • the gene of the invention is present in plants in multiple, preferably two copies, each of these controlled by a different plant expressible promoter.
  • the chimeric gene of the invention can be combined with any further chimeric gene coding for an HPPD protein, preferably these different genes are controlled by different regulatory elements being active in plants.
  • the chimeric gene of the invention can be combined with a CYP450 Maize monooxygenase (nsfl gene) gene being under the control of an identical or different plant expressible promoter.
  • a regulatory terminator or polyadenylation sequence use may be made of any corresponding sequence of bacterial origin, such as for example the nos terminator of Agrobacterium tumefaciens, of viral origin, such as for example the CaMV 35S terminator, or of plant origin, such as for example a histone terminator as described in published Patent Application EP 0 633 317 A1 .
  • gene refers to a DNA coding region flanked by 5' and/or 3' regulatory sequences allowing a RNA to be transcribed which can be translated to a protein, typically comprising at least a promoter region.
  • DNA/protein comprising the sequence X and “DNA/protein with the sequence comprising sequence X”, as used herein, refer to a DNA or protein including or containing at least the sequence X in their nucleotide or amino acid sequence, so that other nucleotide or amino acid sequences can be included at the 5' (or N- terminal) and/or 3' (or C-terminal) end, e.g., a N-terminal transit or signal peptide.
  • comprising is open-ended language in the meaning of
  • DNA encoding a protein comprising sequence X refers to a DNA comprising a coding sequence which after transcription and translation results in a protein containing at least amino acid sequence X.
  • a DNA encoding a protein need not be a naturally occurring DNA, and can be a semi-synthetic, fully synthetic or artificial DNA and can include introns and 5' and/or 3' flanking regions.
  • nucleotide sequence refers to the sequence of a DNA or RNA molecule, which can be in single- or double-stranded form.
  • HPPD proteins according to the invention may be equipped with a signal peptide according to procedures known in the art, see, e.g., published PCT patent application WO 96/10083, or they can be replaced by another peptide such as a chloroplast transit peptide (e.g., Van Den Broeck et al.
  • tolerance means the relative levels of inherent tolerance of the HPPD screened according to a visible indicator phenotype of the strain or plant transformed with a nucleic acid comprising the gene coding for the respective HPPD protein in the presence of different concentrations of the various HPPD inhibitors.
  • Dose responses and relative shifts in dose responses associated with these indicator phenotypes are conveniently expressed in terms, for example, of GR50 (concentration for 50% reduction of growth) or MIC (minimum inhibitory concentration) values where increases in values correspond to increases in inherent tolerance of the expressed HPPD, in the normal manner based upon plant damage, meristematic bleaching symptoms etc.
  • GR50 values derived from dose/response curves having "dose” plotted on the x-axis and “percentage kill", “herbicidal effect”, “numbers of emerging green plants” etc. plotted on the y-axis where increased GR50 values correspond to increased levels of inherent tolerance of the expressed HPPD.
  • Herbicides can suitably be applied pre-emergence or post emergence.
  • tolerance level of the nucleic acid or gene encoding an HPPD protein according to the invention, or the HPPD protein of the invention is screened via transgenesis, regeneration, breeding and spray testing of a test plant such as tobacco, or a crop plant such as soybean or cotton and according to these results, such plants are at least 2-4 times more tolerant to HPPD inhibitors like tembotrione, mesotrione, diketonitrile and/or bicyclopyrone, than plants that do not contain any exogenous gene encoding an HPPD protein, or than plants that contain a gene comprising an Arabidopsis thaliana HPPD-encoding DNA, under control of the same promoter as the HPPD DNA of the invention.
  • HPPD inhibitors like tembotrione, mesotrione, diketonitrile and/or bicyclopyrone
  • HPPD HPPD
  • bacteria for example E. coli
  • yeasts in particular of the genera Saccharomyces or Kluyveromyces
  • Pichia fungi, in particular Aspergillus
  • baculovirus preferably, plant cells and plants.
  • Plant cell is understood, according to the invention, as being any cell which is derived from or found in a plant and which is able to form or is part of undifferentiated tissues, such as calli, differentiated tissues such as embryos, parts of plants, plants or seeds. This includes protoplasts and pollen, cultivated plants cells or protoplasts grown in vitro, and plant cells that can regenerate into a complete plant.
  • Plant is understood, according to the invention, as being any differentiated multicellular organism which is capable of photosynthesis, in particular a
  • Transgenic plants refer to plants comprising a foreign or heterologous gene stably inserted in their genome.
  • the invention relates to the transformation of plants.
  • Any promoter sequence of a gene which is expressed naturally in plants, or any hybrid or combination of promoter elements of genes expressed naturally in plants, including Agrobacterium or plant virus promoters, or any promoter which is suitable for controlling the transcription of a herbicide tolerance gene in plants can be used as the promoter sequence in the plants of the invention (named "plant-expressible promoter" herein). Examples of such suitable plant-expressible promoters are described above.
  • plant-expressible promoters are operably-linked to a coding sequence encoding an HPPD protein of the invention to form a chimeric HPPD gene of this invention.
  • promoter regulatory sequence in combination with the promoter regulatory sequence, other regulatory sequences which are located between the promoter and the coding sequence, such as intron sequences, or transcription activators (enhancers). Examples of such suitable regulatory sequences are described above.
  • Any corresponding sequence of bacterial or viral origin such as the nos terminator from Agrobacterium tumefaciens, or of plant origin, such as a histone terminator as described in application EP 0 633 317 A1 , may be used as transcription termination (and polyadenylation) regulatory sequence.
  • a nucleic acid sequence which encodes a transit peptide is employed 5' (upstream) of the nucleic acid sequence encoding the exogenous HPPD according to the invention, with this transit peptide sequence being arranged between the promoter region and the sequence encoding the exogenous HPPD so as to permit expression of a transit peptide-HPPD fusion protein, such as the protein of SEQ ID No. 20, SEQ ID No. 21 , or SEQ ID No. 22.
  • the transit peptide makes it possible to direct the HPPD into the plastids, more especially the
  • the transit peptide may be a single peptide, such as an EPSPS transit peptide (described in
  • the present invention also relates to the transit peptide-HPPD fusion protein and a nucleic acid or plant-expressible chimeric gene encoding such fusion protein, wherein the two elements of this fusion protein are as defined above.
  • the present invention also relates to a cloning, transformation and/or expression vector, which vector contains at least one chimeric gene as defined above.
  • this vector can contain an origin of replication.
  • This vector can be a plasmid or plasmid portion, a cosmid, or a bacteriophage or a virus which has been transformed by introducing the chimeric gene according to the invention. Transformation vectors are well known to the skilled person and widely described in the literature.
  • the transformation vector which can be used, in particular, for transforming plant cells or plants may be a virus, which can be employed for transforming plant cells or plants and which additionally contains its own replication and expression elements.
  • the vector for transforming plant cells or plants is preferably a plasmid, such as a disarmed Agrobacterium Ti plasmid.
  • the present invention also relates to the host organisms, in particular plant cells, seeds or plants, which comprise a chimeric gene which comprises a sequence encoding an HPPD protein of the invention, such as a protein comprising the amino acid sequence of SEQ ID Nos 17, 18, 19, 20, 21 , or 22 as defined above, and the use of the plants or seeds of the invention in a field to grow a crop and harvest a plant product, e.g., soya spp, rice, wheat, barley or corn grains or cotton bolls, where in one embodiment said use involves the application of an HPPD inhibitor herbicide to such plants to control weeds.
  • a chimeric gene which comprises a sequence encoding an HPPD protein of the invention, such as a protein comprising the amino acid sequence of SEQ ID Nos 17, 18, 19, 20, 21 , or 22 as defined above
  • the HPPD inhibitors are N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones or pyrazolinates, preferably tembotrione, mesotrione, topramezone or sulcotrione, bicyclopyrone, pyrasulfotole, pyrazolate, benzofenap and tefuryltrione, particularly tembotrione. Therefore, the present invention relates to a host organism, in particular a plant cell, seed, or plant, characterized in that it contains at least one HPPD chimeric gene as described above, or at least an HPPD nucleic acid sequence as previously described.
  • the present invention relates to a plant cell, seed, or plant characterized in that it contains at least a nucleic acid sequence which encodes an HPPD protein of this invention which retain its properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which makes this plant more tolerant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of particularly to N-(1 ,2,5-oxadiazol-3-yl)benzamides,
  • the present invention relates to a plant cell, seed, or plant characterized in that it contains at least a nucleic acid sequence which encodes an HPPD of this invention which retain its properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which is less sensitive to one or more HPPD inhibitor herbicide(s) than the host plant endogenous HPPD, such as the HPPD from Arabidopsis thaliana, particularly the HPPD comprising the amino acid sequence of SEQ ID No. 28 (from the amino acid position 126 to the amino acid position 568).
  • the present invention relates to a host plant cell, seed or host plant characterized in that it contains at least a nucleic acid sequence which encodes an HPPD of the invention as defined herein, wherein the HPPD of the invention, compared to the host plant endogenous HPPD, is less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, isoxazoles, diketonitriles, triketones or pyrazolinates, more especially to one or more HPPD inhibitor herbicide(s) selected from the group consisting of isoxaflutole, tembotrione, mesotrione, sulcotrione, pyrasulfotole, bicyclopyrone, tefuryltrione, topramezone, 2-cyano-3-
  • the present invention relates to a plant cell, seed, or plant characterized in that it contains at least a nucleic acid sequence encoding an HPPD of the invention as previously described, and in addition a chimeric gene comprising a plant-expressible promoter as described above, operably-linked to a nucleic acid sequence encoding a PDH (prephenate dehydrogenase) enzyme (US 2005/0257283).
  • PDH prephenate dehydrogenase
  • the present invention also relates to the plants which contain transformed cells, in particular the plants which are regenerated from the transformed cells, and progeny plants or seeds thereof, comprising the chimeric HPPD gene of the invention.
  • the regeneration can be obtained by any appropriate method, with the method depending on the nature of the species, as described, for example, in the above references.
  • the following patents and patent applications may be cited, in particular, with regard to the methods for transforming plant cells and regenerating plants: US 4,459,355,
  • the present invention also relates to the transgenic plants or part thereof, which are derived by cultivating and/or crossing the above transgenic plants, and to the seeds of the transgenic plants, comprising the HPPD chimeric gene of the invention.
  • the present invention also relates to the end products such as the meal or oil which are obtained from the plants, part thereof, or seeds of the invention.
  • the transformed plants which can be obtained in accordance with the invention can be of the monocotyledonous type, such as wheat, barley, sugarcane, rice, onion, and corn or maize, or of the dicotyledonous type, such as tobacco, soya spp, alfalfa Brassica spp. plants such as oilseed rape, cotton, sugarbeet clover, vegetables, etc.
  • the invention relates to a method for transforming host organisms, in particular plant cells or plants, by integrating in such organisms at least one nucleic acid sequence or one chimeric gene as previously defined, wherein it is possible to obtain the transformation by any appropriate known means, which means are amply described in the specialist literature and, in particular, the references cited in the present application, e.g., by using the vector according to the invention.
  • One transformation method in accordance with this invention comprises bombarding cells, protoplasts or tissues with solid or liquid particles to which DNA is attached, or containing DNA.
  • Another transformation method comprises using, as mean for transfer into the plant, a chimeric gene which is inserted into an Agrobacterium tumefaciens Ti plasmid or an Agrobacterium rhizogenes Ri plasmid.
  • Other methods may be used, such as microinjection or electroporation or otherwise direct gene transfer using PEG.
  • the skilled person can select any appropriate method for transforming the host organism of choice, in particular the plant cell or the plant.
  • the technology for soybean transformation has been extensively described in the examples 1 to 3 disclosed in EP 1 186666 A1 , incorporated herein by reference.
  • the HPPD of the invention is targeted into the chloroplast. This may be done by fusing a nucleic acid sequence which encodes a transit peptide to the nucleic acid sequence encoding the HPPD protein of the invention to obtain a nucleic acid encoding a fusion protein as described above.
  • the HPPD of the invention may be expressed directly in the plastids, such as the chloroplasts, using transformation of the plastid, such as the chloroplast genome.
  • a suitable method comprises the bombardment of plant cells or tissue by solid particles coated with the DNA or liquid particles comprising the DNA, and integration of the introduced gene encoding the protein of the invention by
  • the present invention also relates to a method for obtaining a plant to an HPPD inhibitor, characterized in that the plant is transformed with a chimeric HPPD gene of the invention as previously described. Therefore, the present invention also relates to a method for obtaining a plant tolerant to an HPPD inhibitor, characterized in that the plant contains a chimeric HPPD gene of the invention which comprises a coding sequence as well as a heterologous regulatory element in the 5' and optionally in the 3' positions, which are able to function in a host organism, characterized in that the coding sequence comprises at least a nucleic acid sequence defining a gene encoding an HPPD of the invention as previously described.
  • the HPPD inhibitor in the above method is selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketone or pyrazolinate herbicide, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione pyrasulfotole, pyrazolate, diketonitrile, benzofenap, or sulcotrione, particularly it is tembotrione.
  • a method for obtaining a plant tolerant to an HPPD inhibitor as described above is also provided, characterized in that a plant is obtained comprising a first transgene which is a chimeric HPPD gene of the invention, and a second transgene, which is a chimeric gene comprising a plant-expressible promoter operably-linked to a nucleic acid encoding a PDH (prephenate dehydrogenase) enzyme.
  • a first transgene which is a chimeric HPPD gene of the invention
  • a second transgene which is a chimeric gene comprising a plant-expressible promoter operably-linked to a nucleic acid encoding a PDH (prephenate dehydrogenase) enzyme.
  • a plant comprising such two transgenes can be obtained by transforming a plant with one transgene, and then re-transforming this transgenic plant with the second transgene, or by transforming a plant with the two transgenes simultaneously (in the same or in 2 different transforming DNAs or vectors), or by crossing a plant comprising the first transgene with a plant comprising the second transgene, as is well known in the art.
  • the invention also relates to a method for selectively removing weeds or preventing the germination of weeds in a field to be planted with plants or to be sown with seeds, or in a plant crop, by application of an HPPD inhibitor to such field or plant crop, in particular an HPPD inhibitor heribicide as previously defined, which method is characterized in that this HPPD inhibitor herbicide is applied to plants which have been transformed in accordance with the invention, either before sowing the crop (hereinafter named pre-planting application), before emergence of the crop
  • pre-emergence application or after emergence of the crop (hereinafter named post-emergence application).
  • the invention also relates to a method for controlling in an area or a field which contains transformed seeds as previously described in the present invention, which method comprises applying, to the said area of the field, a dose of an HPPD inhibitor herbicide which is toxic for the said weeds, without significantly affecting the seeds or plants which contain the HPPD nucleic acid or the chimeric HPPD gene of the invention as previously described in the present invention.
  • the present invention also relates to a method for cultivating the plants which have been transformed with a chimeric gene according to the invention, which method comprises planting seeds comprising a chimeric gene of the invention, in an area of a field which is appropriate for cultivating the said plants, and in applying, if weeds are present, a dose, which is toxic for the weeds, of a herbicide whose target is the above- defined HPPD to the said area of the said field, without significantly affecting the said transformed seeds or the said transformed plants, and in then harvesting the cultivated plants or plant parts when they reach the desired stage of maturity and, where appropriate, in separating the seeds from the harvested plants.
  • the herbicide whose target is the HPPD enzyme can be applied in accordance with the invention, either before sowing the crop, before the crop emerges or after the crop emerges.
  • the present invention also relates to a process for obtaining oil, particularly soya spp, corn or cotton oil, or meal, comprising growing a crop, particularly a soya spp crop, expressing an HPPD protein of the invention optionally treating such crop with an HPPD inhibitor herbicide, harvesting the grains and milling the grains to make meal and extract the oil.
  • the seeds or grains, either whole, broken or crushed, comprising the chimeric gene of the invention are part of this invention.
  • the present invention relates to a method for obtaining oil or meal comprising growing a transformed plant as described above, optionally treating such plant with an HPPD inhibitor herbicide, harvesting the grains and milling the grains to make meal and extract the oil.
  • HPPD inhibitor herbicide(s) selected from the group consisting of isoxaflutole, tembotrione, mesotrione, pyrasulfotole, sulcotrione, bicyclopyrone, tefuryltrione, topramezone, 2-cyano-3-cyclopropyl-1 -(2-methylsulphonyl-4-trifluoromethylphenyl)- propane-1 ,3-dione and to 2-cyano-1 -[4-(methylsulphonyl)-2-trifluoromethylphenyl]-3- (1 -methylcyclopropyl)propane-1 ,3-dione.
  • HPPD inhibitor herbicide(s) selected from the group consisting of isoxaflutole, tembotrione, mesotrione, pyrasulfotole, sulcotrione, bicyclopyrone, tefuryltrione, topramezone, 2-cyano-3-cyclopropyl-1 -(2-methyl
  • HPPD inhibitor herbicide(s) selected from the group consisting of triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembotrione.
  • triketones such as tembotrione, sulcotrione and mesotrione
  • pyrazolinates such as pyrasulfotole and topramezone
  • pyrasulfotole and topramezone particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembotrione.
  • herbicide is understood as being a herbicidally active substance on its own or such a substance which is combined with an additive which alters its efficacy, such as, for example, an agent which increases its activity (a synergistic agent) or which limits its activity (a safener). It is of course to be understood that, for their application in practice, the above herbicides are combined, in a manner which is known per se, with the formulation adjuvants which are customarily employed in agricultural chemistry.
  • HPPD inhibitor herbicides like those of the class of N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides,
  • triketones such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione, have an outstanding herbicidal activity against a broad spectrum of economically important monocotyledonous and dicotyledonous annual harmful plants.
  • the active substances also act efficiently on perennial harmful plants which produce shoots from rhizomes, wood stocks or other perennial organs and which are difficult to control.
  • the present invention therefore also relates to a method of controlling undesired plants or for regulating the growth of plants in crops of plants comprising an HPPD according to the invention, where one or more HPPD inhibitor herbicides of the class of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione are applied to the plants (for example harmful plants such as monocotyledonous or dicotyledonous weeds or undesired crop plants), to the seeds (for example grains
  • one or m ore HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and
  • topramezone particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it it tembotrione can be applied for example pre-planting (if appropriate also by incorporation into the soil), pre-emergence or post-emergence.
  • Monocotyledonous harmful plants of the genera Aegilops, Agropyron, Agrostis, Alopecurus, Apera, Avena, Brachiaria, Bromus, Cenchrus, Commelina, Cynodon,
  • transgenic crops according to the invention comprising an HPPD protein, DNA or chimeric gene according invention and which may also show one more further herbicide resistances against herbicides that differ from HPPD inhibitor herbicides
  • novel plants with modified properties can be generated with the aid of recombinant methods (see, for example, EP-A-0221044 A1 , EP-A-0131624 A1 ). For example, the following have been described in several cases:
  • glufosinate type cf., for example, EP-A-0242236, EP-A-242246) or of the glyphosate type (WO 92/00377) or of the sulfonylurea type (EP-A-0257993, US-A-501 3659),
  • transgenic crop plants for example corn, cotton or soya spp, which are capable of producing Bacillus thuringiensis toxins (Bt toxins), or hybrids or mutants thereof, which make the plants resistant to certain pests (EP-A-0193259), transgenic crop plants with a modified fatty acid composition (WO 91 /13972), genetically modified crop plants with novel constituents or secondary
  • transgenic crop plants which are distinguished by higher yields or better quality
  • transgenic crop plants which are distinguished by a combination of novel properties such as a combination of the abovementioned novel properties ("gene stacking").
  • nucleic acid molecules into plasmids, which permit a mutagenesis or sequence modification by recombination of DNA sequences.
  • base substitutions can be carried out, part-sequences can be removed, or natural or synthetic sequences may be added with the aid of standard methods.
  • adapters or linkers to the fragments; see, for example, Sambrook et al., 1989, Molecular Cloning, A Laboratory Manual, 2. ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY; or Winnacker "Gene und Klone", VCH Weinheim 2. ed. (1996).
  • the generation of plant cells with a reduced activity for a gene product can be achieved for example by the expression of at least one corresponding antisense RNA, a sense RNA for achieving a cosuppression effect, or a combination of both an antisense and sense RNA forming a double-stranded silencing RNA molecule (RNAi), or by the expression of at least one correspondingly constructed ribozyme, which specifically cleaves transcripts of the abovementioned gene product.
  • RNAi double-stranded silencing RNA molecule
  • DNA molecules which comprise all of the coding sequence of a gene product including any flanking sequences which may be present, or else DNA molecules which only comprise parts of the coding sequence, it being necessary for these parts to be long enough to bring about an antisense effect in the cells. It is also possible to use DNA sequences which have a high degree of homology with the coding sequences of a gene product, but which are not entirely identical.
  • the obtained protein When expressing nucleic acid molecules in plants, the obtained protein may be localized in any compartment of the plant cell. In order to achieve localization in a particular compartment, however, it is possible for example to link the coding region to DNA sequences which ensure the localization in a specific compartment. Such sequences are known to the skilled person (see, for example, Braun et al.,( 992), EMBO J. ,1 1 , 3219-3227; Wolter et al.(1988), Proc. Natl. Acad. Sci. USA 85, 846-850; Sonnewald et al. (1991 ), Plant J. ,1 ,95-106). However, the nucleic acid molecules can also be expressed in the organelles of the plant cells.
  • the transgenic plant cells can be regenerated by known techniques to give intact plants.
  • the transgenic plants may be plants of any plant species, including monocotyledonous or dicotyledonous plants.
  • HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazoiinates, such as pyrasuifotole and topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembotrione in transgenic crops which are also resistant to growth regulators such as, for example, 2,4-D or dicamba, or against herbicides which inhibit essential plant enzymes, for example acetolactate synthases (ALS), EPSP synthe
  • ALS acetolactate synthases
  • the invention therefore also relates to the use of herbicides applied to this HPPD tolerant plants according to the invention for controlling harmful plants (i.e. weeds) which also extends to transgenic crop plants comprising a second or more herbicide resistance(s) beside the resistance against one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, isoxazoles such as isoxaflutole, pyrazoiinates, such as pyrasuifotole and topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembot
  • WP wettable powders
  • SP water-soluble powders
  • EC emulsifiable concentrates
  • EW emulsions
  • SC suspension concentrates
  • SC oil- or water-based dispersions
  • CS capsule suspensions
  • DP dusts
  • seed-dressing products granules for application by broadcasting and on the soil, granules (GR) in the form of
  • microgranules spray granules, coated granules and adsorption granules, water- dispersible granules (WG), water-soluble granules (SG), ULV formulations, microcapsules and waxes.
  • WG water- dispersible granules
  • SG water-soluble granules
  • ULV formulations microcapsules and waxes.
  • formulation auxiliaries required such as inert materials, surfactants, solvents and further additives, are also known and are described, for example, in: Watkins,
  • Wettable powders are preparations which are uniformly dispersible in water and which, besides the active substance, also comprise ionic and/or nonionic surfactants (wetters, dispersers), for example polyoxyethylated alkylphenols, polyoxyethylated fatty alcohols, polyoxyethylated fatty amines, fatty alcohol polyglycol ether sulfates, alkanesulfonates, alkylbenzenesulfonates, sodium lignosulfonate, sodium
  • ionic and/or nonionic surfactants for example polyoxyethylated alkylphenols, polyoxyethylated fatty alcohols, polyoxyethylated fatty amines, fatty alcohol polyglycol ether sulfates, alkanesulfonates, alkylbenzenesulfonates, sodium lignosulfonate, sodium
  • the herbicidally active substances are ground finely, for example in customary apparatuses such as hammer mills, blower mills and air-jet mills, and mixed with the formulation auxiliaries, either simultaneously or subsequently.
  • Emulsifiable concentrates are prepared by dissolving the active substance in an organic solvent, for example butanol, cyclohexanone, dimethylformamide, xylene or else higher-boiling aromatics or hydrocarbons or mixtures of the organic solvents with addition of one or more ionic and/or nonionic surfactants (emulsifiers).
  • organic solvent for example butanol, cyclohexanone, dimethylformamide, xylene or else higher-boiling aromatics or hydrocarbons or mixtures of the organic solvents with addition of one or more ionic and/or nonionic surfactants (emulsifiers).
  • emulsifiers which may be used are: calcium alkylarylsulfonates such as calcium dodecylbenzenesulfonate, or nonionic emulsifiers such as fatty acid polyglycol esters, alkylaryl polyglycol ethers, fatty alcohol polyglycol ethers, propylene oxide/ethylene oxide condensates, alkyl polyethers, sorbitan esters such as, for example, sorbitan fatty acid esters or polyoxyethylene sorbitan esters such as, for example,
  • Dusts are obtained by grinding the active substance with finely divided solid materials such as, for example, talcum, natural clays such as kaolin, bentonite and pyrophyllite, or diatomaceous earth.
  • Suspension concentrates can be water- or oil-based. They can be prepared for example by wet-grinding by means of commercially available bead mills, if appropriate with addition of surfactants as already listed above for example in the case of the other formulation types.
  • Emulsions for example oil-in-water emulsions (EW)
  • EW oil-in-water emulsions
  • Granules can be prepared either by spraying the active substance onto adsorptive, granulated inert material, or by applying active substance concentrates to the surface of carriers such as sand, kaolinites or granulated inert material with the aid of stickers, for example polyvinyl alcohol, sodium polyacrylate or else mineral oils. Suitable active substances can also be granulated in the manner which is customary for the production of fertilizer granules, if desired as a mixture with fertilizers.
  • Water-dispersible granules are generally prepared by customary methods such as spray drying, fluidized-bed granulation, disk granulation, mixing with high-speed stirrers, and extrusion without solid inert material.
  • the agrochemical preparations comprise from 0.1 to 99% by weight, in particular from 0.1 to 95% by weight, of compounds according to the invention.
  • the active substance concentration is, for example,
  • the active substance concentration can amount to approximately 1 to 90, preferably 5 to 80% by weight.
  • Formulations in the form of dusts comprise from 1 to 30% by weight of active substance, preferably in most cases from 5 to 20% by weight of active substance, and sprayable solutions comprise approximately from 0.05 to 80, preferably from 2 to 50% by weight of active substance.
  • the active substance content depends partly on whether the active compound is in liquid or solid form, and on the granulation auxiliaries, fillers and the like which are being used. In the case of the water-dispersible granules, for example, the active substance content is between 1 and 95% by weight, preferably between 10 and 80% by weight.
  • the active substance formulations mentioned comprise, if appropriate, the auxiliaries which are conventional in each case, such as stickers, wetters, dispersants, emulsifiers, penetrations, preservatives, antifreeze agents, solvents, fillers, carriers, colorants, antifoams, evaporation inhibitors, and pH and viscosity regulators.
  • the auxiliaries which are conventional in each case, such as stickers, wetters, dispersants, emulsifiers, penetrations, preservatives, antifreeze agents, solvents, fillers, carriers, colorants, antifoams, evaporation inhibitors, and pH and viscosity regulators.
  • Known herbicides or plant growth regulators which can be combined with the compounds according to the invention are, for example, the following active substances (the compounds are either designated by the common name according to the International Organization for Standardization (ISO) or by a chemical name, if appropriate together with the code number) and always comprise all use forms such as acids, salts, esters and isomers such as stereoisomers and optical isomers.
  • ISO International Organization for Standardization
  • chemical name if appropriate together with the code number
  • acetochlor acibenzolar, acibenzolar-S-methyl, acifluorfen, acifluorfen-sodium, aclonifen, alachlor, allidochlor, alloxydim, alloxydim-sodium, ametryne, arnica rbazone, amidochlor, amidosulfuron, aminocyclopyrachlor, aminopyralid, amitrole, ammonium sulfamate, ancymidol, anilofos, asulam, atrazine, azafenidin, azimsulfuron, aziprotryne, BAH-043, BAS-140H, BAS-693H, BAS-714H, BAS-762H, BAS-776H, BAS-800H, beflubutamid, benazolin, benazolin-ethyl, bencarbazone, benfluralin,
  • chlorflurenol chlorflurenol-methyl, chloridazon, chlorimuron, chlorimuron-ethyl, chlormequat-chloride, chiornitrofen, chlorophthalim, chlorthal-dimethyl, chlorotoluron, chlorsulfuron, cinidon, cinidon-ethyl, cinmethyiin, cinosulfuron, ciethodim, clodinafop clodinafop-propargyl, clofencet, clomazone, clomeprop, cloprop, clopyralid, cloransulam, cloransulam-methyl, cumyluron, cyanamide, cyanazine, cyclanilide, cycloate, cyclosulfamuron, cycloxydim, cycluron, cyhalofop, cyhalofop-butyl, cyperquat, cyprazine
  • monocarbamide dihydrogen sulfate monolinuron, monosulfuron, monuron, MT 128, MT-5950, i.e. N-[3-chloro-4-(1 -methylethyl)-phenyl]-2-methylpentanamide, NGGC- 01 1 , naproanilide, napropamide, naptalam, NC-310, i.e.
  • oxaziclomefone oxyfluorfen, paclobutrazole, paraquat, paraquat dichloride, pelargonic acid (nonanoic acid), pendimethalin, pendralin, penoxsulam, pentanochlor, pentoxazone, perfluidone, pethoxamid, phenisopham, phenmedipham,
  • pyribenzoxim pyributicarb, pyridafol, pyridate, pyriftalid, pyriminobac, pyriminobac- methyl, pyrimisulfan, pyrithiobac, pyrithiobac-sodium, pyroxasulfone, pyroxsulam, quinclorac, quinmerac, quinoclamine, quizalofop, quizalofop-ethyl, quizalofop-P, quizalofop-P-ethyl, quizalofop-P-tefuryl, rimsulfuron, saflufenacil, secbumeton, sethoxydim, siduron, simazine, simetryn, SN-106279, sulf-allate (CDEC),
  • sulfentrazone sulfometuron, sulfometuron-methyl, sulfosate (glyphosate-trimesium), sulfosulfuron, SYN-523, SYP-249, SYP-298, SYP-300, tebutam, tebuthiuron, tecnazene, tepraloxydim, terbacil, terbucarb, terbuchlor, terbumeton, terbuthylazine, terbutryne, TH-547, thenylchlor, thiafluamide, thiazafluron, thiazopyr, thidiazimin, thidiazuron, thiencarbazone, thiencarbazone-methyl, thifensulfuron, thifensulfuron- methyl, thiobencarb, tiocarbazil, tralkoxydim, tri-allate, tria
  • the application rate required of the HPPD inhibitor herbicide of the class of ) N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione to be applied to areas where HPPD tolerant plants according to the present invention are growing varies as a function of the external conditions such as temperature, humidity, the nature of the herbicide used and the like. It can vary within wide limits, for example between 0.001 and 1 .0 kg/ha and more of active substance, but it is preferably between 0.00
  • HPPD inhibitor herbicide(s) may cause crop injury, based on the presence of the non HPPD inhibitor herbicide(s).
  • appropriate safeners may be added.
  • safeners which are employed in antidotically active amounts, reduce the phytotoxic side effects of herbicides/pesticides used, for example in economically important crops, such as cereals (wheat, barley, rye, corn, rice, millet), alfalfa, sugar beet, sugarcane, oilseed rape, cotton and soya spp., preferably corn, cotton, sugarbeet, or soya spp.
  • the safeners are preferably selected from the group consisting of: compounds of the formula S-I)
  • is a natural number from 0 to 5, preferably from 0 to 3;
  • RA 1 is halogen, (Ci-C-4)-alkyl, (Ci-C-4)-alkoxy, nitro or (d-C -haloalkyl;
  • WA is an unsubstituted or substituted divalent heterocyclic radical from the group consisting of partially unsaturated or aromatic five-membered heterocycles having 1 to 3 hetero ring atoms of the type N or O, where at least one nitrogen atom and at most one oxygen atom is present in the ring, preferably a radical from the group consisting of (W A 1 ) to (W A 4 ),
  • RA 2 is ORA 3 , SRA 3 or N R A 3 R A 4 or a saturated
  • RA 3 is hydrogen or an unsubstituted or substituted aliphatic hydrocarbon radical having preferably a total of 1 to 18 carbon atoms;
  • RA 4 is hydrogen, (Ci-Ce)-alkyl, (Ci-Ce)-alkoxy or substituted or unsubstituted phenyl;
  • RA 5 is H , (d-Ce)-alkyl, (Ci-C8)-haloalkyl), (Ci-C4)-alkoxy-(Ci-C 8 )-alkyl, cyano or
  • R A 9 is hydrogen, (Ci-Ce)-alkyl, (Ci-C 8 )-haloalkyl, (Ci-C 4 )-alkoxy- (Ci-C 4 )-alkyl, (Ci-C 6 )-hydroxyalkyl, (C 3 -Ci 2 )-cycloalkyl or t -(Ci-C 4 )-alkylsilyl;
  • RA 6 , RA 7 , RA 8 are identical or different and are hydrogen, (Ci-Ce)-alkyl,
  • dichlorophenylpyrazolecarboxylic acid preferably compounds such as ethyl 1 -(2,4-dichlorophenyl)-5-methylpyrazole-3-carboxylate (S1 -2), ethyl 1 -(2,4-dichlorophenyl)-5-isopropylpyrazole-3-carboxylate (S1 -3), ethyl
  • compounds of the type of the triazolecarboxylic acids preferably compounds such as fenchlorazole(-ethyl ester), i.e. ethyl 1 -(2,4-dichlorophenyl)-5-trichloro- methyl-(1 H)-1 ,2,4-triazole-3-carboxylate (S1 -6), and related compounds, as described in EP-A-174 562 and EP-A-346 620;
  • 5-phenyl-2-isoxazoline-3-carboxylate (S1 -8) and related compounds, as described in WO 91 /08202, or ethyl 5,5-diphenyl-2-isoxazolinecarboxylate (S1 -9) ("isoxadifen- ethyl") or n-propyl 5,5-diphenyl-2-isoxazolinecarboxylate (S1 -10) or ethyl
  • RB 1 is halogen, (Ci-C )-alkyl, (Ci-C-4>-alkoxy, nitro or (Ci-C-4)-haloalkyl;
  • ne is a natural number from 0 to 5, preferably from 0 to 3;
  • RB 3 is hydrogen or an unsubstituted or substituted aliphatic hydrocarbon radical having preferably a total of 1 to 18 carbon atoms;
  • RB 4 is hydrogen, (Ci-Ce)-alkyl, (Ci-Ce)-alkoxy or substituted or unsubstituted phenyl;
  • TB is a (Ci- or C2)-alkanediyl chain which is unsubstituted or substituted by one or two (CrC 4 )-alkyl radicals or by [(Ci-C3)-alkoxy]carbonyl; preferably:
  • Rc 1 is (Ci-C4)-alkyl, (Ci-C 4 )-haloalkyl, (C 2 -C 4 )-alkenyl, (C 2 -C 4 )-haloalkenyl, (C3-C7)- cycloalkyl, preferably dichloromethyl;
  • Rc 2 , Rc 3 are identical or different and are hydrogen, (CrC 4 )-alkyl, (C2-C 4 )-alkenyl,
  • R-29148 3-dichloroacetyl-2,2,5-trimethyl-1 ,3-oxazolidine from Stauffer
  • R-28725" 3-dichloroacetyl-2,2,-dimethyl-1 ,3-oxazolidine from Stauffer
  • DKA-24 N-allyl-N-[(allylaminocarbonyl)methyl]dichloroacetamide from Sagro-
  • TI-35 1 -dichloroacetylazepane from TRI-Chemical RT
  • RD 1 is CO-N R D 5 RD 6 or N HCO-RD 7 ;
  • RD 2 is halogen, (d-G -haloalkyl, (Ci-Ci)-haloalkoxy, nitro, (Ci-C ⁇ )-alkyl, (C1-C4)- alkoxy, (Ci-C4)-alkylsulfonyl, (Ci-C4)-alkoxycarbonyl or (Ci-C 4 )-alkylcarbonyl;
  • RD 3 is hydrogen, (Ci-C 4 )-alkyl, (C2-C 4 )-alkenyl or (C2-C 4 )-alkynyl;
  • RD 4 is halogen, nitro, (Ci-C 4 )-alkyl, (Ci-C 4 )-haloalkyl, (Ci-C 4 )-haloalkoxy, (C3-C6)- cycloalkyl, phenyl, (Ci-C 4 )-alkoxy, cyano, (Ci-C 4 )-alkylthio, (Ci-C 4 )-alkylsulfinyl, (Cr C 4 )-alkylsulfonyl, (Ci-C 4 )-alkoxycarbonyl or (Ci-C 4 )-alkylcarbonyl;
  • RD 5 is hydrogen, (Ci-C 6 )-alkyl, (C 3 -C 6 )-cycloalkyl, (C2-C 6 )-alkenyl, (C 2 -C 6 )-alkynyl, (C5-C6)-cycloalkenyl, phenyl or 3- to 6-membered heterocyclyl containing VD heteroatoms from the group consisting of nitrogen, oxygen and sulfur, where the seven last-mentioned radicals are substituted by VD substituents from the group consisting of halogen, (Ci-C-6)-alkoxy, (Ci-Cej-haloalkoxy, (Ci-C-2)-alkylsulfinyl, (C1-C2)- alkylsulfonyl, (C3-C6)-cycloalkyl, (Ci-C4)-alkoxycarbonyl, (Ci-C4)-a!kylcarbonyl and phenyl and, in the case
  • RD 6 is hydrogen, (Ci-C6)-alkyl, (C2-Ce)-alkenyl or (C2-C6)-alkynyl, where the three last-mentioned radicals are substituted by VD radicals from the group consisting of halogen, hydroxy, (Ci-C-4)-alkyl, (Ci-C-4)-alkoxy and (Ci-C4)-alkylthio, or
  • RD 7 is hydrogen, (Ci-C-4)-alkylamino, di-(Ci-C4)-alkylamino, (Ci-Ce)-alkyl, (C3-Ce)- cycloalkyl, where the 2 last-mentioned radicals are substituted by VD substituents from the group consisting of halogen, (Ci-C 4 )-alkoxy, halogen-(Ci-C6)-alkoxy and (Ci-C 4 )- alkylthio and, in the case of cyclic radicals, also (Ci-C-4)-alkyl and (Ci-C-4)-haloalkyl; n D is 0, 1 or 2;
  • VD is 0, 1 , 2 or 3; from among these, preference is given to compounds of the type of the
  • N-acylsulfonamides for example of the formula (S-V) below, which are known, for example, fro
  • RD 7 is (Ci-Ce)-alkyl, (C3-C6)-cycloalkyl, where the 2 last-mentioned radicals are substituted by VD substituents from the group consisting of halogen, (Ci-C4)-alkoxy, halogen-(Ci-C6)-alkoxy and (Ci-C4)-alkylthio and, in the case of cyclic radicals, also (CrC 4 )-alkyl and (CrC 4 )-haloalkyl;
  • RD 4 is halogen, (Ci-C 4 )-alkyl, (CrC 4 )-alkoxy, CF 3;
  • m D is 1 or 2; is 0, 1 , 2 or 3; and also
  • RD 8 and R D 9 independently of one another are hydrogen, (Ci-Ce)-alkyl, (Cs-Cs)- cycloalkyl, (C 3 -C 6 )-alkenyl, (C 3 -C 6 )-alkynyl,
  • RD 4 is halogen, (Ci-C 4 )-alkyl, (Ci-C 4 )-alkoxy, CF 3
  • n D is 1 or 2; from among these in particular
  • RK 1 , RK 2 independently of one another are halogen, (CrC4)-alkyl, (Ci-C4)-alkoxy, (Ci-C4)-haloalkyl, (CrC4)-alkylamino, di-(Ci-C4)-alkylamino, nitro;
  • A is COORK 3 or COORK 4
  • RK 3 , RK 4 independently of one another are hydrogen, (Ci-C-4)-alkyl, (C2-C-6)- alkenyl, (C2-C 4 )-alkynyl, cyanoaikyi, (Ci-C4)-haloalkyl, phenyl, nitrophenyl, benzyl, halobenzyl, pyridinylalkyl or alkylammonium,
  • n 1 is 0 or 1 ,
  • ⁇ 2 , ⁇ 3 independently of one another are 0, 1 or 2 preferably: methyl (diphenylmethoxy)acetate (CAS Reg. No.: 41858-19-9),
  • fV is halogen, (Ci-C 4 )-alkyl, (Ci-C 4 )-haloalkyl, (Ci-C 4 )-alkoxy, (Ci-C 4 )-haloalkoxy, nitro, (CrC 4 )-alkylthio, (Ci-C 4 )-alkylsulfonyl, (Ci-C 4 )-alkoxycarbonyl, optionally substituted phenyl, optionally substituted phenoxy,
  • RL 2 is hydrogen or (Ci-C 4 )-alkyl
  • RL 3 is hydrogen, (Ci-C-8)-alkyl, (C2-C 4 )-alkenyl, (C2-C 4 )-alkynyl or aryl, where each of the carbon-containing radicals mentioned above is unsubstituted or substituted by one or more, preferably by up to three, identical or different radicals from the group consisting of halogen and alkoxy; or salts thereof, M) active compounds from the class of the 3-(5-tetrazolylcarbonyl)-2-quinolones, for example
  • RN 1 is halogen, (Ci-C 4 )-alkyl, methoxy, nitro, cyano, CF 3 , OCF 3
  • Y, Z independently of one another are O or S,
  • is an integer from 0 to 4,
  • RN 2 is (Ci-Ci6)-alkyl, (C2-C-6)-alkenyl, (C3-C6)-cycloalkyl, aryl, benzyl, halobenzyl, RN 3 is hydrogen, (d-CeJalkyl,
  • a mixture with other known active compounds such as fungicides, insecticides, acaricides, nematicides, bird repellents, plant nutrients and soil structure improvers is likewise possible.
  • the weight ratios of herbicide (mixture) to safener generally depend on the herbicide application rate and the effectiveness of the safener in question and may vary within wide limits, for example in the range from 200:1 to 1 :200, preferably from 100:1 to 1 :100, in particular from 20:1 to 1 :20.
  • the safeners may be formulated analogously to the compounds to be safened or their mixtures with other herbicides/pesticides and be provided and used as a finished formulation or as a tank mix with the herbicides.
  • the required application rate of the compound to be safened varies depending, inter alia, on external conditions such as temperature, humidity and the type of herbicide used. It can vary within wide limits, for example between 0.001 and 10 000 g/ha or more of active substance; however, it is preferably between 0.5 and 5000 g/ha, particularly preferably between 0.5 and 1000 g/ha and very particularly preferably between 0.5 and 500 g/ha.
  • the transgenic plant of the invention contains one or more other genes for tolerance towards other herbicides (as, for example, a gene which encodes a mutated or unmutated EPSPS which confers on the plant tolerance to glyphosate herbicides or a pat or bar gene conferring tolerance to glufosinate herbicides), or when the transgenic plant is naturally resistant to another herbicide (such as sulfonylurea tolerance), the method according to the invention can comprise the simultaneous or chronologically staggered application of one or more HPPD inhibitor herbicide(s) in combination with the said herbicide or herbicide combination, for example glyphosate and/or glufosinate and/or sulfonylurea herbicides, 2,4-D and/or dicamba.
  • other herbicides as, for example, a gene which encodes a mutated or unmutated EPSPS which confers on the plant tolerance to glyphosate herbicides or a pat or bar gene conferring tolerance to glufos
  • the invention also relates to the use of the chimeric gene encoding the HPPD of the invention as a marker gene during the transformation of a plant species, based on the selection on the abovementioned HPPD inhibitor herbicides.
  • the present invention also relates to a method for obtaining a plant resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamide, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamide, a triketone(s) and pyrazolinate(s), characterized in that the plant is transformed with a chimeric gene expressing in the plant an HPPD of the invention as defined herein.
  • the invention relates to said method for obtaining a plant resistant to a one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones and pyrazolinates, characterized in that the HPPD protein of the invention comprises SEQ ID No.
  • the invention relates to said method for obtaining a plant resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, and triketone(s), such as tembotrione, mesotrione, diketonitrile, isoxaflutole, sulcotrione, tefuryltrione, and bicyclopyrone.
  • HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, and triketone(s), such as tembotrione, mesotrione, diketonitrile, isoxaflutole,
  • the invention relates to said method for obtaining a plant resistant to one or more HPPD inhbitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones and pyrazoiinates, characterized in that the plant also comprises a plant-expressible chimeric gene encoding a PDH (prephenate
  • dehydrogenase enzyme, or an enzyme with at least PDH.
  • the invention also relates to a method for controlling weeds in an area or a field, which method comprises planting in this area or field transformed plants resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones and pyrazoiinates which has been obtained according to the method described above, or transformed seeds which originates from them, and in applying a dose which is toxic for the weeds of said triketone or pyrazolinate HPPD inhibitor without significantly affecting the said transformed seeds or the said transformed plants.
  • HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, tri
  • the invention also relates to a method for obtaining oil or meal comprising growing a transformed plant resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N- (triazol-3-yl)arylcarboxamides, triketones, and pyrazoiinates which has been obtained according to the method described above, or a transformed seed which originates from such plant, optionally treating such plant or seed with a triketone or a pyrazolinate HPPD inhibitor, harvesting the grains and milling the grains to make meal and extract the oil.
  • HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N- (triazol-3-yl)arylcarboxamides, triketones, and pyrazoi
  • the invention also relates to the use of an HPPD of the invention as described above, characterized in that the HPPD inhibitor herbicide(s) is/are selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones, preferably selected from the group consisting of tembotrione, mesotrione, topramezone, bicyclopyrone, tefuryltrione and sulcotrione.
  • the HPPD inhibitor herbicide(s) is/are selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones, preferably selected from the group consisting of tembotrione, mesotrione, topram
  • the present invention also relates to a host organism, in particular plant cells or plants, which contain a chimeric gene comprising a sequence encoding an HPPD according to the invention, and which also contain a gene functional in this host organism allowing overexpression of a prephenate dehydrogenase (abbreviated herein as PDH) enzyme.
  • a host organism in particular plant cells or plants, which contain a chimeric gene comprising a sequence encoding an HPPD according to the invention, and which also contain a gene functional in this host organism allowing overexpression of a prephenate dehydrogenase (abbreviated herein as PDH) enzyme.
  • PDH prephenate dehydrogenase
  • PDH enzyme refers to any natural or mutated PDH enzyme exhibiting the PDH activity of conversion of prephenate to HPP.
  • said PDH enzyme can originate from any type of organism.
  • An enzyme with PDH activity can be identified by any method that makes it possible either to measure the decrease in the amount of prephenate substrate, or to measure the accumulation of a product derived from the enzymatic reaction, i.e. HPP or one of the cof actors NADH or NADPH.
  • the invention further relates to a method for obtaining a host organism, particularly a plant cell or a plant, resistant to one or more HPPD inhibitor herbicide(s) by integrating in such organism at least one nucleic acid sequence or one chimeric gene as defined above, and by further transforming it, simultaneously or successively, with a gene functional in this host organism allowing expression of a PDH (prephenate dehydrogenase) enzyme.
  • a host organism particularly a plant cell or a plant
  • HPPD inhibitor herbicide(s) by integrating in such organism at least one nucleic acid sequence or one chimeric gene as defined above, and by further transforming it, simultaneously or successively, with a gene functional in this host organism allowing expression of a PDH (prephenate dehydrogenase) enzyme.
  • PDH prephenate dehydrogenase
  • the invention relates to a method for obtaining a host organism, particularly a plant cell or a plant, resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamide, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamide, triketones and pyrazolinates, particularly resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of tembotrione, mesotrione, topramezone, bicyclopyrone, isoxaflutole, pyrasulfotole, tefuryltrione, and sulcotrione.
  • HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamide, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarbox
  • FIG.2 Map of the T-DNA inserted into the tobacco plants Map of the T-DNA inserted in the d liferents plants according to Examples 5 to 1 1 ; Abbreviations used for constructs haveing the following meanings:
  • A, B, and C tobacco plants
  • D and E tobacco and soybean plants
  • F, G, H, and I soybean plants
  • J cotton plants.
  • H6 sequence coding for an His TAG
  • OTP optimized transit peptide
  • BAR Bialaphos resistant, WO 87/05629
  • PAT phosphinothricin N-Acetyltransferase, EP 257542
  • 2mEPSPS gene coding for the double mutant (Thr102lle and Pro106Ser) EPSPS (5-enolpyruvylshikimate synthase) from Zea mays (US 20030027312)
  • 2mAHAS gene coding for the double mutant ALS (acetolactate synthase) from Arabidopsis (Pro197Ala and Trp574Leu; US 5378824
  • HA histone promoter from
  • FMP44e gene coding for FMP44 optimized for the expression in E coli with an sequence coding for an His TAG at its 5' extremity
  • FMP44d gene coding for FMP44 optimized for the expression in dicotyledoneous plants
  • FMP44n is the native gene sequence coding for FMP44, LB, left border, RB, right border.
  • SEQ ID No. 1 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD
  • SEQ ID No. 2 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for E. coli, containing at the 5' end a nucleic acid sequence encoding an aspartate.
  • SEQ ID No. 3 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for E. coli, containing at the 5' end a nucleic acid sequence encoding a HIS tag (according to SEQ ID No. 4), followed by a nucleic acid stretch encoding 2 serines and 1 glycine, followed by a nucleic acid stretch encoding a protein binding site thrombin (according to SEQ ID No. 6) followed by a nucleic acid stretch endoding a glycine and methionine, followed by a nucleic acid stretch encoding a S-tag (according to SEQ ID No.
  • nucleic acid stretch encoding proline, aspartate, leucine, glycine, and threonine followed by a nucleic acid stretch encoding the recognition site of an enterokinase (according to SEQ ID No. 10), followed by a nucleic acid encoding aspartate in front of the AUG start codon subsequently followed by a nucleic acid sequence encoding for an aspartate.
  • SEQ ID No. 4 Nucleic acid sequence encoding 6 consecutive histidines.
  • SEQ ID No. 5 Amino acid sequence derived from SEQ ID No. 4.
  • SEQ ID No. 6 Nucleic acid stretch encoding a protein binding site thrombin.
  • SEQ ID No. 7 Amino acid sequence derived from SEQ ID No. 6.
  • SEQ ID No. 8 Nucleic acid stretch encoding a S-tag.
  • SEQ ID No. 9 Amino acid sequence derived from SEQ ID No. 8.
  • SEQ ID No.10 Nucleic acid stretch encoding the recognition site of an
  • SEQ ID No. 1 Amino acid sequence derived from SEQ ID No. 10.
  • SEQ ID No.12 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for E. coli containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide (according to SEQ ID No. 13) and an aspartate.
  • SEQ ID No. 13 Nucleic acid sequence encoding an optimized transit peptide.
  • SEQ ID No. 14 Amino acid sequence derived from SEQ ID No. 13.
  • SEQ ID No. 15 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for dicotyledonous plants containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide (according to SEQ ID No. 13) and an aspartate.
  • SEQ ID No. 16 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide (according to SEQ ID No. 13)
  • SEQ ID No. 18 Protein encoded by SEQ ID No. 2.
  • SEQ ID No. 21 Protein encoded by SEQ ID No. 15.
  • SEQ ID No. 22 Protein encoded by SEQ ID No. 16.
  • SEQ ID No. 25 Nucleic acid sequence encoding Arabidopsis thaliana HPPD
  • nucleic acid encoding an alanine and 6 histidine amino acids
  • SEQ ID No. 26 Protein encoded by SEQ ID No. 25.
  • SEQ ID No. 27 Nucleid acid sequence encoding Arabidopsis thaliana HPPD
  • SEQ ID No. 28 Protein of SEQ ID No. 24 plus the OTP sequence (SEQ ID No. 14) located at the N-terminal extremity of the protein.
  • SEQ ID No. 29 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Zea mays plants
  • SEQ ID No. 30 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Brassica napus plants
  • SEQ ID No. 31 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Beta vulgaris plants
  • SEQ ID No. 32 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Gossypium hirsutum plants
  • SEQ ID No. 33 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Glycine max plants
  • SEQ ID No. 34 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Hordeum vulgare plants
  • SEQ ID No. 35 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Oryza sativa plants
  • SEQ ID No. 36 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Triticum aestivum plants
  • SEQ ID No. 37 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for dicotyledonous plants containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide
  • FMP44n represents the native gene sequence coding for the HPPD protein FMP44.
  • FMP44e represents the gene sequence optimized for the expression in E. coli coding for the HPPD protein FMP44.
  • FMP44d represents the gene sequence otpimized for the expression in
  • dicotyledeneous plants such as for example in soybean, cotton, oil seed rape and sugarbeet coding for the HPPD protein FMP44.
  • FMP44da represents the gene sequence optimized for the expression in
  • dicotyledeneous plants such as for example in soybean, cotton, oil seed rape and sugarbeet coding for the HPPD protein FMP44 modified by inserting an aspartate in position 2.
  • FMP44m represents the gene sequence otpimized for the expression in Zea mays plants coding for the HPPD protein FMP44.
  • Amycolicicoccus subflavus HPPD (named FMP44) of SEQ ID No. 19 and of the Arabidopsis thaliana HPPD identified by SEQ ID No. 26.
  • the Arabidopsis thaliana AtHPPD coding sequence (1335 bp; Genebank AF047834; WO 96/38567) was initially cloned into the expression vector pQE-30 (QIAGEN, Hilden, Germany) in between the restriction sites of BamHI and Hindlll. The obtained vector was called "pQE30-AtHPPD".
  • Amycolicicoccus subflavus HPPD sequence (1206 bp) coding for the protein listed under the accession number F6EIA4 at UniProtKB/TrEMBL was modified and synthesized using an Escherichia coli K12 optimized codon usage (GeneArt, Regensburg, Germany, proprietary software) and cloned in a modified pBluescript vector (GeneArt, Regensburg, Germany).
  • a nucleic acid sequence coding for an alanine was inserted.
  • two additional cytosine base pairs were added in order to obtain a sequence corresponding to the recognition site of the restriction enzyme Ncol and downstream to the stop codon the sequences corresponding to the recognition site of the restriction enzyme BamHI were added.
  • the resulting vector "pBluescript-FMP44e" was digested with the restriction enzymes Ncol and BamHI, the band migrating not to the length of the size of the vector approximately 3000 bp corresponding to the DNA was separated on an agarose gel per electrophoresis.
  • DNA coding for the HPPD was purified using the MinEluteTM Gel Extraction Kit (Qiagen, Hilden, Germany) and cloned into the pET32a (Novagen, Darmstadt, Germany) vector (see below) previously cut with the same restriction enzymes.
  • the cloning of the gene coding for FMP44 into pET32a was made in frame in order to obtain a fusion between a upstream N-terminal His-tag (composed of six histidine amino acids (also called “His6”) and the protein FMP44 in E. coli cells.
  • the plasmid possesses the trp-lac (trc) promoter and the lacl q gene that provides the lac repressor in every E. coli host strain.
  • the lac repressor binds to the lac operator (lacO) and restricts expression of the target gene; this inhibition can be alleviated by induction with Isopropyl ⁇ -D-l -thiogalactopyranoside (IPTG).
  • the resulting vector was called "pET32a-FMP44e” (see Figurel ) and it was used to transform Escherichia coli BL21 cells (Merck, Darmstadt, Germany ).
  • AtHPPD (Arabidopsis thaliana HPPD) that was used as reference see
  • pre-starter culture 2 mL of TB medium (100 g*mL "1 carbenicillin) were inoculated with 50 ⁇ _ of an E. coli K-12 BL21 glycerol stock. The pre-starter culture was incubated at 37 °C with shaking at 140 rpm for 15 h. 200 ⁇ of the pre-starter culture was used to initiate the starter culture (5ml_ TB supplement with 100 Mg*L "1 ), which was incubated 3 h at 37°C.
  • Lysis of cells were lysed using Lysozyme, an enzyme that cleaves the 1 ,4-
  • the lysis buffer contained Benzonase ® Nuclease, an endonuclease that hydrolyzes all forms of DNA and RNA without damaging proteins and thereby largely reduces viscosity of the cell lysate. Lysis under native conditions was carried out on ice.
  • the cleared cell lysate (10 mL) obtained after centrifugation of the lysis reaction was loaded onto a Ni-NTA Fast Start Column from the QIAexpress ® Ni-NTA Fast Start Kit (Qiagen, Hilden, Germany) and purification was carried out according to the instruction manual.
  • the Hise-tagged protein was eluted with 2.5 mL of elution buffer. Desalting of HPPD solutions by gel filtration
  • HPPD solutions eluted from a Ni-NTA Fast Start Column with 2.5 mL of elution buffer were applied to a Sephadex G-25 PD-10 column (GE Healthcare, Freiburg, Germany) following the user manual instruction. After the whole sample had entered the gel bed, elution was performed with 3.5 mL of storage buffer. The HPPD solutions eluted from the desalting column were frozen at -80 °C in 1 ml_ aliquots.
  • HPPD activity was checked by the standard spectrophotmetric assay (method extensively described in WO 2009/144079)
  • the assay mixtures contained in a volume of 1 ml 150 mM Tris-HCI buffer at pH 7.8, 10 mM sodium ascorbate, 650 units of bovine catalase (Sigma C30 (Sigma-Aldrich, Kunststoff, Germany), 34 mg protein/ml, 23,000 units/mg), and appropriate amounts of HPP, purified HPPD enzyme and HPPD inhibitors.
  • K m , Vmax, and kcat value determination HPP concentrations in the assay mixture varied between 10 and 400 ⁇ .
  • HPP hydroxyphenylpyruvate
  • K m Kinetic characterization of HPPD enzymes (Arabidopsis thaliana "SEQ ID No. 26" and Amycolici coccus subflavus “SEQ ID No. 19") and their respective tolerance to the HPPD inhibitor diketonitrile.
  • K m (Michaelis-Menten constant) means the kinetic parameter that is used to characterise an enzyme, and it is defined as the concentration of substrate that permits half maximal rate of the reaction. K m is further defined as the substrate concentration at which the reaction rate reaches half of its maximum value (Vmax/2) where Vmax has the meaning of being the maximum velocity of the reaction.
  • plso-value means the log value of the concentration of inhibitor necessary to inhibit 50% of the enzyme activity in molar concentration.
  • plso-values for HPPD inhibitors were determined from dose-response plots of HPPD activity versus inhibitor concentration using the assay extensively described in WO 2009/144079 at 2 mM fixed HPP concentration and 3 minutes fixed incubation time using the ID Business Solutions Ltd. XLfit software suite.
  • Table 3 Determination of pl50 HPPD enzymes (Arabidopsis thaliana "SEQ ID No. 26" and Amycolici coccus subflavus “SEQ ID No. 19”) and their respective tolerance to the several listed below HPPD inhibitors tembotrione, diketonitrile, mesotrione, bicyclopyrone, pyrasulfotole, sulcotrione, pyrazolate, tefuryltrione, benzofenap, topramezone, and Example No 1 -188 (WO 2012/028579).
  • HPPD inhibitors tembotrione, diketonitrile, mesotrione, bicyclopyrone, pyrasulfotole, sulcotrione, pyrazolate, tefuryltrione, benzofenap, topramezone, and Example No 1 -188 (WO 2012/028579).
  • Table 4 Determination of percentage of inhibition in presence of 5.0x10 "6 M inhibitors compared to the activity measured in absence of the inhibitor for the HPPD originated from Arabidopsis thaliana (SEQ ID No. 26) and from Amycolicicoccus subfiavus (SEQ ID No. 19). [herein, n.d. means not determined]
  • SEQ ID No. 19 showed superior level of tolerance to all tested HPPD inhibitors than the plant at all tested HPPD inhibitor concentrations than observed by employing the HPPD “SEQ ID No. 26” under identical experimental conditions.
  • Table 5 Determination of pl50 of HPPD from Amycolicicoccus subflavus (SEQ ID No. 19) and HPPD from Arabidopsis thaliana (SEQ ID No. 26) for tembotrione and diketonitrile using the HPLC method. The amount of homogentisate form in the reaction vial is evaluation after the reaction being stop after 3 minutes.
  • Example 3 Influence of protein Tags on protein activity and tolerance to selected HPPD inhibitor herbicides:
  • the vector pSE420(RI)NX was restricted with the same enzymes.
  • the insert and the vector were ligated to generate the vector pSE420(RI)NX-FMP44e.
  • vector pSE420(RI)NX was restricted with the enzymes Eco53KI and BamHI.
  • the isolated insert and vector were ligated and the resulting vector was called pSE420(RI)NX-His-Tag-FMP44e.
  • Vectors will be used to transform E coli BL21 . Following the standard protocols described above, proteins will be produced. However, the protein will not be purified using His-Tag affinity column, but the HPPD activity will be directly estimated in the protein raw extract obtained from induced bacteria.
  • Example 4 Construction of chimeric genes for the evaluation HPPD inhibitor herbicide tolerance in tobacco plants. A) Construction of the chimeric genes
  • Binary vectors for dicotyledoneous (like tobacco and soybean) transformation were constructed with the 2xCaMV35S promoter or 2xCsVMV (Cassava Vein Mosaic Virus (Plant Mol. Biol. (1998), 37(6), 1055-1067) driving the expression of the gene FMP44d (SEQ ID No. 37), FMP44da (SEQ ID No. 15) with a codon usage optimized for the expression in dicotyledoneous plants or FMP44n (SEQ ID No.
  • the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator for glufosinate based selection during the transformation process and a 2mEPSPS gene cassette in which the gene is driven by an histone promoter from Arabidopsis thaliana to confer tolerance to the herbicide glyphosate to the transformed plants (see Fig.3 F, Fig. 3 G, Fig.3 H, and Fig.3 I).
  • the vectors pQE-30-AtHPPD was used for PCR-mediated attachment of an Ncol restriction site and of a sequence encoding an N-terminal Hise-Tag to the 5 ' ends and a Xbal restriction site to the 3' ends of AtHPPD.
  • the PGR product of the AtHPPD gene (Arabidopsis thaliana HPPD gene) was isolated from an agarose gel, cut with the restriction enzymes Ncol and Xbal, purified with the inEluteTM PGR Purification Kit (Qiagen, Hilden, Germany) and cloned into the pSE420(RI)NX vector cut with the same restriction enzymes.
  • the generated vector was called "pSE420(RI)NX-AtHPPD” and was digested with the restriction enzymes Ncol and Xbal and cloned into the previously opened vector pRT100 (Toepfer et al., (1987), Nucleic Acids Res 15:5890) containing the CaMV35S promoter and CaMV35S terminator.
  • the generated vector was called "pRT100- AtHPPD”.
  • the vector pCR-TOPO-OTP was digested with the restriction enzymes Ncol and Xhol, and the DNA band corresponding to the OTP was cloned in the previously opened vector pRT100-AtHPPD with the above mentioned restriction enzymes.
  • the resulting vector was subsequently digested with restriction enzyme Hindi 11 and the expression cassette of interest was cloned into the previously opened and dephosphorylated binary vector pBin19.
  • the resulting vector was called "AtHPPDbv".
  • the binary vectors "pBIN19-35S-OTP-FMP44e and AtHPPDbv were used to transform Agrobacterium tumefaciens (ATHV derived from EHA101 ) competent cells selected on YEB media supplemented with the antibiotics kanamycin and rifampicin (extensively described in the patent application US005925808A).
  • Agrobacterium tumefaciens ATV derived from EHA101
  • competent cells selected on YEB media supplemented with the antibiotics kanamycin and rifampicin (extensively described in the patent application US005925808A).
  • the binary vectors comprising 2xCaMV35S-TEV-OTP-FMP44d and 2xCsV V-OTP- FMP44d (as described above) were employed to transform Agrobacterium
  • tumefaciens (ATHV derived from EHA101 ) competent cells selected on YEB media supplemented with the antibiotics kanamycin and rifampicin (extensively described in the patent application US005925808A).
  • Agrobacterium strains containing the binary vectors of interest were used to transform leaf discs from tobacco Nicotiana tabacum L. cv SR1 NN plants, having approximately a size of 5x5mm 2 as extensively described in Horsch et al., (1985), Science 227 ; 1229-1231 .
  • the leaf disks were co-cultivated for 2 days with Agrobacterium tumefaciens cells containing any of the binary vectors as described above. Then the leaf disks were transferred to a media allowing the regeneration of shoots for 6 weeks on MS
  • Regenerated calli were transferred on media to induce the development of roots for 6 to 12 weeks: MS (1/2), supplemented with carbenicillin (250 mg/mL), cefotaxine (250 mg/mL), kanamycin (75 mg/mL), or glyphosate (1 mM).
  • Amycolicicoccus subflavus or the protein of SEQ ID No. 37 comprising the HPPD sequence of Amycolicicoccus subflavus were transferred to a media inducing root growth for 6 to 12 weeks.
  • Example 5 Glasshouse trials to evaluate tolerance to HPPD inhibitor herbicides of transgenic tobacco plants expressing a gene coding for tolerant HPPD protein
  • 2xCaMV35S-TEV or 2xCsVMV mentioned above were transferred to the glasshouse (28/20X), to develop further.
  • the plants weretransferred to soil (ED73 mixed with sand and osmocote Pro) in the glasshouse (28/20°C). Two to three weeks later the TO tobacco plants were sprayed with
  • - tembotrione at 100gAI/ha prepared from a WP20 (wettable powder 20%) formulation supplemented with ammonium sulfate and methyl ester raps oil, or
  • blind formulation made from a WP20 formulation without active ingredient (A!) supplemented with ammonium sulfate and methyl ester raps oil, and
  • the treated plants evaluated as "0” are looking like the untreated tobacco plants.
  • the plants evaluated as “1” display temporarly light bleaching phenotype due to the application of the herbicides.
  • the plants evaluated as “2” display permanent light to strong bleaching symptoms.
  • Finally the plants evalutated as "3" are looking like wild type tobacco plants submitted to the same treatment construct Treated 0 1 2 3 Tolerance
  • plants level wt none 3 3 3 0
  • - tembotrione at 1 00 gAI/ha prepared from a WP20 (wettable powder 20%) formulation supplemented with ammonium sulfate and methyl ester raps oil, or
  • blind formulation made from a WP20 formulation without active ingredient (AS) supplemented with ammonium sulfate and methyl ester raps oil, and
  • the treated plants evaluated as "0" are looking like the untreated tobacco plants.
  • the plants evaluated as “1” display temporarly light bleaching phenotype due to the application of the herbicides.
  • the plants evaluated as “2” display permanent light to strong bleaching symptoms.
  • Finally the plants evalutated as "3" are looking like wild type tobacco plants submitted to the same treatment
  • the vector pFCO1 17 (WO201 1/09460) was derived from pSF49, a descendant of pBL150u2 (EP508909).
  • the bar cassette has first been cloned into pSF49 (NOt!/ Avrll), to obtain pFC020.
  • the cassette contains lox sites for bar removal (c re/I ox system) in the event and some meganucleases sites (l-Scel, l-Crel, l-Ceul, Pi-See!) for further gene insertion at the same locus by homologous recombination.
  • pFC020 contains convenient restriction sites for epsps cloning (Sbfl/ Swal) and HPPD cloning (Mscl/ Xhol).
  • EPSPS is under the control of Ph4A7, promoter of Arabidopsis thaliana histone H4 gene (Chaboute M, et al., (1987), Plant Mol Biol, 8:179-191 ).
  • the expression of the w336 mutated HPPD from Pseudomonas fluorescens (Boudec P.
  • HPPD proteins are targeted into the chloroplast via the optimized transit peptide TPotpc (Lebrun et al (1996); US5510471 ).
  • the TPotpc- HPPDPfw336 sequence is codon optimized in order to fit dicotyledeneous plants such as for example soybean, cotton, sugarbeets, and oil seeds raps usage codon.
  • a gene with codon usage optimized for the expression in dicotyledoneous plants such as for example soybean, cotton, sugarbeets, and oil seeds raps coding for the HPPD protein FMP44 was designed, and named FMP44d (SEQ ID No. 37) and a gene with codon usage optimized for the expression in dicotyledoneous plants such as for example soybean, cotton, sugarbeets, and oil seeds raps coding for FMP44 including an additional aspartate in position 2 (SEQ ID No 18, compared to orginal SEQ ID No. 17) was designed and named FMP44da (SEQ ID No. 15).
  • FMP44d SEQ ID No. 37
  • FMP44da SEQ ID No. 15
  • Cauliflower Mosaic Virus 35S transcript followed by ENtev, an enhancer sequence of tobacco etch virus (Carrington J.c. and Freed D.D. (1990), J. Virol., 64, 1590-1597), followed by the gene coding for mutant Pseudomonas fluorescens HPPD G336W.
  • the final vector containing a gene coding for double mutant EPSPS, a gene coding for the PAT/BAR and a gene encoding the HPPD FMP44 was called pFCO-FMP44 (see Fig 3).
  • the binary vectors were respectively called and can be used for example to transform dicotyledenous plants, such as tobacco plants as described above. Sufficiently grown transformant plants are then tested for their tolerance to HPPD inhibitor herbicides, such as tembotrione. The development of the observed symptoms in response to the herbicidal treatment is evaluated and compared to the response of wild type plants under the same conditions.
  • 10OgAI tembotrione/ha rooted plants containing the T-DNA Prom2xCaMV35S-TEV-OTP- FMP44d-TerCaMV35S, will be transferred to the greenhouse under standard growth conditions. Following a period of acclimation of two weeks, the TO plants will be treated with a mixture containing an equivalent to 100 g tembotrione /ha prepared from a WP20 (wettable powder 20%) formulation supplemented with ammonium sulfate and methyl ester raps oil. Two weeks after the treatment, the symptoms due to the application of the herbicides will be evaluated. The plants will be classified in four categories. The treated plants evaluated as "0" are looking like the untreated tobacco plants. The plants evaluated as "1 " display temporarely a light bleaching phenotype. The plants evaluated as "2" display permanent light to strong bleaching symptoms. Finally the plants evalutated as "3" are looking like wild type tobacco plants submitted to the same treatment.
  • Example 7 Cloning of gene FMP44n and FMP44m coding for FMP44 HPPD in a vector to transform Zea mays plants.
  • FMP44n SEQ ID No. 1
  • FMP44m SEQ ID No. 29 genes will be cloned under the control of a rice ubiquitin promoter and transferred into an approriate maize transformation vector. This vector will be used to transform Agrobacterium
  • Immature embryos of maize of the Hi Type II hybrid line (Armstrong et al. (1991 ), Maize Genet. Coop. News, 65:92-93) are aseptically isolated from greenhouse-grown ears, 10-16 days after pollination.
  • the embryos are infected and co-cultivated for 3 days with Agrobacterium tumefaciens cultures carrying an HPPD gene on the binary vector.
  • Agrobacterium tumefaciens cultures carrying an HPPD gene on the binary vector After co-cultivation, the embryos are grown on selective callus inducing medium containing phosphinoticin (5 mg/l) and sub-cultured every 2 weeks till production of type II embryogenic callus. The callus is then grown on selective regeneration medium for the development of transgenic maize plants (Frame et al.
  • the vectors according to Example 6 will be employed for soybean transformation as described in WO201 1/09460.
  • Binary vectors for soybean transformation is, for example, constructed with the CaMV35 promoter driving the expression of the gene FMP44d (SEQ ID No. 37), FMP44da (SEQ ID No. 15) with a codon usage optimized for the expression in dicotyledoneous plants or FMP44n (SEQ ID No. 16) with a native codon usage and at the 5'extremity was added a sequence coding for an OTP, and further upstream a sequence TEV (Tobacco etch virus) to improve the stability of the mRNA in plants followed by the CaMV35S terminator.
  • FMP44d SEQ ID No. 37
  • FMP44da SEQ ID No. 15
  • FMP44n SEQ ID No. 16
  • TEV tobacco etch virus
  • the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator for glufosinate based selection during the transformation process and a 2mEPSPS gene cassette in which the gene is driven by an histone promoter from Arabidopsis thaliana to confer tolerance to the herbicide glyphosate to the transformed plants (see Fig.3 J). .
  • Soybean transformation is achieved using methods well known in the art, such as the one described using the Agrobacterium tumefaciens mediated transformation soybean half-seed explants described by Paz et al. (2006), Plant cell Rep. 25:206.
  • Transformants were identified using Isoxaflutole or tembotrione as selection marker. The appearance of green shoots was observed, and documented as an indicator of tolerance to the herbicide isoxaflutole or tembotrione. The tolerant transgenic shoots will show normal greening comparable to wild-type soybean shoots not treated with isoxaflutole or tembotrione, whereas wild-type soybean shoots treated with the same amount of isoxaflutole or tembotrione will be entirely bleached. This indicates that the presence of FMP44 protein enables the tolerance to HPPD inhibitor herbicides, like isoxaflutole or tembotrione.
  • Tolerant green shoots will be transferred to rooting media or grafted. Rooted plantlets will be transferred to the glasshouse after an acclimation period. Plants containing the transgene will be then sprayed with HPPD inhibitor herbicides, as for example with tembotrione at a rate of 100g Al/ha. Ten days after the application the symptoms due to the application of the herbicide will be evaluated and compared to the symptoms observed on a wild type plants under the same conditions.
  • a binary vector for cotton transformation is, for example, constructed with the
  • CaMV35 promoter driving the expression of the gene FMP44d (SEQ ID No. 37), with a codon usage optimized for the expression in dicotyledoneous plants or the gene FMP44da (SEQ ID No. 15) with a codon usage optimized for the expression in dicotyledoneous plants or the gene FMP44n (SEQ ID No. 16) with a native codon usage and at the 5 ' extremity was added a sequence coding for an OTP, and further upstream a sequence TEV (Tobacco Etch Virus) to improve the stability of the mRNA in plants followed by the CaMV35S terminator.
  • TEV tobacco Etch Virus
  • the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator for glufosinate based selection during the transformation process and a 2mEPSPS gene cassette in which the gene is driven by an histone promoter from Arabidopsis thaliana to confer tolerance to the herbicide glyphosate to the transformed plants (see Fig.3 J).
  • a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator for glufosinate based selection during the transformation process
  • a 2mEPSPS gene cassette in which the gene is driven by an histone promoter from Arabidopsis thaliana to confer tolerance to the herbicide glyphosate to the transformed plants (see Fig.3 J).
  • Example 10 Cotton TO plant establishment and selection.
  • Cotton transformation is achieved using methods well known in the art, especially preferred method in the one described in the PCT patent publication WO 00/71733.
  • Regenerated plants are transferred to the glasshouse. Following an acclimation period, sufficiently grown plants are sprayed with HPPD inhibitor herbicides as for example tembotrione equivalent to 100 gAI/ha supplemented with ammonium sulfate and methyl ester raps oil. Seven days after the spray application, the symptoms due to the treatment with the herbicide are evaluated and compared to the symptoms observed on wild type cotton plants subjected to the same treatment under the same conditions.
  • HPPD inhibitor herbicides as for example tembotrione equivalent to 100 gAI/ha supplemented with ammonium sulfate and methyl ester raps oil.
  • Example 1 1 Construction of binary transformation vectors to generate plants tolerant to four herbicides with distinct modes of action.
  • a binary vector for dicotyledoneous plant transformation is, for example, constructed with the CaMV35 promoter driving the expression of the gene FMP44d (SEQ ID No. 37), with a codon usage optimized for the expression in dicotyledoneous plants or of the gene FMP44n (SEQ ID No. 16) with a native codon usage and at the 5'-extremity is added a sequence coding for an OTP followed by the CaMV35S terminator.
  • the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator to confer tolerance to glufosinate to the plant expressing the gene, a 2mEPSPS gene cassette coding for the double mutant (Thr102lle and Pro106Ser) EPSPS in which the gene is driven by an histone promoter from Arabidopsis to confer tolerance to the herbicide glyphosate to the transformed plants, and an Arabidopsis thaliana 2mAHAS gene cassette encoding a tolerant ALS enzyme (Acetolactate synthase, Pro197Ala, Trp574Leu) driven by a CaMV35S promoter to confer tolerance to herbicides from the sulfonylurea or imidazolinone classes to the plant expressing this gene (see Fig.3 G).
  • a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator to confer
  • the gene cassettes will be finally cloned into the vector pHoe6/Ac (US 6,316,694), and the final vectors will be called pHoe6/FMP44d/PAT/EPSPS/AHAS and pHoe6/FMP44n/PAT/EPSPS/AHAS confront and is used to transform dicotyledoneous plants via Agrobacterium tumefaciens mediated state of the art methods.
  • TO plants are transferred to soil, and after an acclimation period, sufficiently grown plants are sprayed successively with an herbicide from the HPPD inhibitor class, then with glufosinate and finally with an ALS inhibitor herbicide, preferably with a compound selected from the group of sulfonylureas or sulfonylaminocarbonyltriazolinones .

Abstract

.The present invention relates to nucleic acid sequences encoding a hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27, abbreviated herein as "HPPD") obtained from bacteria belonging to the family mycobacteriaceae, as well as the proteins encoded thereby, to a chimeric gene which comprises such nucleic acid sequence, and to the use of such nucleic acid sequences, proteins or chimeric genes for obtaining plants which are tolerant to one or more HPPD inhibitor herbicide(s).

Description

Plants tolerant to HPPD inhibitor herbicides.
Introduction
The present invention relates to nucleic acid sequences encoding a
hydroxyphenylpyruvate dioxygenase (EC 1 .13.1 1 .27, abbreviated herein as "HPPD") obtained from bacteria belonging to the family mycobacteriaceae, as well as the proteins encoded thereby, to a chimeric gene which comprises such nucleic acid sequence, and to the use of such nucleic acid sequences, proteins or chimeric genes for obtaining plants which are tolerant to one or more HPPD inhibitor herbicide(s).
Background
The HPPDs are enzymes which catalyse the reaction in which para- hydroxyphenylpyruvate (abbreviated herein as HPP), a tyrosine degradation product, is transformed into homogentisate (abbreviated herein as HG), the precursor in plants of tocopherol and plastoquinone (Crouch N.P. et al. (1997), Tetrahedron, 53, 20, 6993-7010, Fritze et al. (2004), Plant Physiology 134: 1388-1400). Tocopherol acts as a membrane-associated antioxidant. Plastoquinone, firstly acts as an electron carrier between PSII and the cytochrome b6/f complex and secondly, is a redox cofactor for phytoene desaturase, which is involved in the biosynthesis of carotenoids.
Up to now, more than 1000 nucleic acid sequences from various organisms present in the NCBI database were annotated as coding for a putative protein having an HPPD domain including the sequence disclosed under the F6EIA4 accession number given in the UniProtKB TrEMBL database as well as under the YP_00449401 1 accession number given in the NCBI protein database, as well as under AEF4121 1 accession number given in the EMBL protein database. But for most of those, including the sequence corresponding to the accession numbers F6EIA4, YP_00449401 1 , AEF4121 1 , it has not been proven that the protein would have an HPPD enzymatic activity either in an in vitro assay or an in in planta approach, nor that such HPPD protein can confer herbicide tolerance to HPPD inhibitor herbicides when expressed in a plant. Several HPPD proteins and their primary sequences have been described in the state of the art, in particular the HPPD proteins of bacteria such as Pseudomonas (Ruetschi et al., Eur. J. Biochem., 205, 459-466, 1992, WO 96/38567), Kordia
(WO201 1076889) Synechococcus (WO201 1076877), and Rhodoccus
(WO201 1076892), of protists such as Blepharisma (WO201 1076882), of euryarchaeota such as Picrophilus (WO201 1076885) of plants such as Arabidopsis (WO 96/38567, Genebank AF047834), carrot (WO 96/38567, Genebank 87257), Avena sativa (WO 02/046387), wheat (WO 02/046387), Brachiaria platyphylla (WO 02/046387),
Cenchrus echinatus (WO 02/046387), Lolium rigidum (WO 02/046387), Festuca arundinacea (WO 02/046387), Setaria faberi (WO 02/046387), Eleusine indica (WO 02/046387), Sorghum (WO 02/046387), Coccicoides (Genebank COITRP), of Coptis japonica (WO 06/132270), Chlamydomonas reinhardtii (ES 2275365), or of mammals such as mouse or pig. The corresponding sequences disclosed in the indicated references are hereby incorporated by reference..
Most plants synthesize tyrosine via arrogenate (Abou-Zeid et al. (1995), Applied Env Microb 41 : 1298-1302; Bonner et al. (1995), Plant Cells Physiol. 36, 1013-1022; Byng et al. (1981 ), Phytochemistry 6: 1289-1292; Connely and Conn (1986), Z. Naturforsch 41 c: 69-78; Gaines et al. (1982), Plants 156: 233-240). In these plants, the HPP is derived only from the degradation of tyrosine. On the other hand, in organisms such as the yeast Saccharomyces cerevisiae or the bacterium Escherichia coli, HPP is a tyrosine precursor, and it is synthesized by the action of an enzyme, prephenate dehydrogenase (hereinafter referred to as PDH), which converts prephenate to HPP (Lingens et al. (1967), European J. Biochem 1 : 363-374; Sampathkumar and
Morrisson (1982), Bioch Biophys Acta 701 : 204-21 1 ). In these organisms, the production of HPP is therefore directly connected to the aromatic amino acid biosynthetic pathway (shikimate pathway), and not to the tyrosine degradation pathway. Inhibition of HPPD leads to uncoupling of photosynthesis, deficiency in accessory light-harvesting pigments and, most importantly, to destruction of chlorophyll by UV- radiation and reactive oxygen species (bleaching) due to the lack of photo protection normally provided by carotenoids (Norris et al. (1995), Plant Cell 7: 2139-2149).
Bleaching of photosynthetically active tissues leads to growth inhibition and plant death.
Some molecules which inhibit HPPD, and which bind specifically to the enzyme in order to inhibit transformation of the HPP into homogentisate, have proven to be very effective selective herbicides.
At present, mostly available HPPD inhibitor herbicides belong to one of these six chemical families:
1 ) the triketones, e.g. sulcotrione [i.e. 2-[2-chloro-4-(methylsulfonyl)benzoyl]-1 ,3- cyclohexanedione], mesotrione [i.e. 2-[4-(methylsulfonyl)-2-nitrobenzoyl]-1 ,3- cyclohexanedione]; tembotrione [i.e. 2-[2-chloro-4-(methylsulfonyl)-3-[(2,2,2,-tri- fluoroethoxy)methyl] benzoyl]-1 ,3-cyclo-hexanedione]; tefuryltrione [i.e. 2-[2-chloro-4- (methylsulfonyl)-3-[[(tetrahydro-2-furanyl)methoxy]methyl]benzoyl]-1 ,3- cyclohexanedione]]; bicyclopyrone [i.e. 4-hydroxy-3-[[2-[(2-methoxyethoxy)methyl]-6- (trifluoromethyl)-3-pyridinyl]carbonyl]bicyclo[3.2.1 ]oct-3-en-2-one]; Benzobicycion [i.e.
3- (2-chloro-4-mesylbenzoyl)-2-phenylthiobicyclo[3.2.1 ]oct-2-en-4-one];
2) the diketonitriles, e.g. 2-cyano-3-cyclopropyl-1 -(2-methylsulphonyl-4- trifluoromethylphenyl)-propane-1 ,3-dione and 2-cyano-1 -[4-(methylsulphonyl)-2- trifluoromethylphenyl]-3-(1 -methylcyclopropyl)propane-1 ,3-dione;
3) the isoxazoles, e.g. isoxaflutole [i.e.(5-cyclopropyl-4-isoxazolyl)[2-(methylsulfonyl)-
4- (trifluoromethyl)phenyl]methanone]. In plants, isoxaflutole is rapidly metabolized in DKN, a diketonitrile compound which exhibits the HPPD inhibitor property;
4) the pyrazolinates, e.g. topramezone [i.e.[3-(4,5-dihydro-3-isoxazolyl)-2-methyl-4- (methylsulfonyl) phenyl](5-hydroxy-1 -methyl-1 H-pyrazol-4-yl)methanone], and pyrasulfotole [i.e. (5-hydroxy-1 ,3-dimethylpyrazol-4-yl(2-mesyl-4- trifluaromethylphenyl)methanone]; pyrazofen [i.e. 2-[4-(2,4-dichlorobenzoyl)-1 ,3- dimethylpyrazol-5-yloxy]acetophenone]; 5) N-(1 ,2,5-oxadiazol-3-yl)benzamides; and
6) N-(tetrazol-4-yl)- or N-(triazoi-3-yl)arylcarboxamides.
These HPPD-inhibiting herbicides can be used against grass and/or broad leaf weeds in crop plants that display metabolic tolerance, such as maize (Zea mays) in which they are rapidly degraded (Schulz et al. (1993), FEBS letters, 318, 162-166; Mitchell et al. (2001 ), Pest Management Science, Vol 57, 120-128; Garcia et al. (2000), Biochem., 39, 7501 -7507; Pallett et al. (2001 ), Pest Management Science, Vol 57, 133-142). In order to extend the scope of these HPPD-inhibiting herbicides, several efforts have been developed in order to confer to plants, particularly plants without or with an underperforming metabolic tolerance, a tolerance level acceptable under agronomic field conditions. Besides the attempt of by-passing HPPD-mediated production of homogentisate (US 6,812,010), overexpressing the sensitive enzyme so as to produce quantities of the target enzyme in the plant which are sufficient in relation to the herbicide has been performed (W096/38567). Overexpression of HPPD resulted in better pre-emergence tolerance to the diketonitrile derivative (DKN) of isoxaflutole (I FT), but tolerance was not sufficient for tolerance to post-emergence treatment (Matringe et al. (2005), Pest Management Science 61 : 269-276).
A third strategy was to mutate the HPPD in order to obtain a target enzyme which, while retaining its properties of catalysing the transformation of HPP into
homogentisate, is less sensitive to HPPD inhibitors than is the native HPPD before mutation. This strategy has been successfully applied for the production of plants tolerant to 2- cyano-3-cyclopropyl-1 -(2-methylsulphonyl-4-trifluoromethylphenyl)-propane-1 ,3-dione and to 2-cyano-1 -[4-(methylsulphonyl)-2-trifluoromethylphenyl]-3-(1 - methylcyclopropyl)propane-1 ,3-dione (EP496630), two HPPD-inhibiting herbicides belonging to the diketonitriles family (WO 99/24585). Pro215Leu, Gly336Glu,
Gly336lle, and more particularly Gly336Trp (positions of the mutated amino acid are indicated with reference to the Pseudomonas HPPD) were identified as mutations which are responsible for an increased tolerance to pre-emergence treatment with these diketonitrile herbicides without causing an alteration of the activity of the enzyme.
More recently, introduction of a Pseudomonas HPPD gene into the plastid genome of tobacco and soybean has shown to be more effective than nuclear transformation, conferring even tolerance to post-emergence application of isoxaflutole (Dufourmantel et al. (2007), Plant Biotechnol J.5(1 ):1 18-33).
In WO 04/024928, the inventors have sought to increase the prenylquinone biosynthesis (e.g., synthesis of plastoquinones, tocopherols) in the cells of plants by increasing the flux of the HPP precursor into the cells of these plants. This has been done by connecting the synthesis of said precursor to the "shikimate" pathway by overexpression of a PDH enzyme. They have also noted that the transformation of plants with a gene encoding a PDH enzyme makes it possible to increase the tolerance of said plants to HPPD inhibitors. In the patent application WO 2009/144079, a nucleic acid sequence encoding a mutated hydroxyphenylpyruvate dioxygenase (HPPD) at position 336 of the
Pseudomonas fluorescens HPPD protein and its use for obtaining plants which are tolerant to HPPD inhibitor herbicides is disclosed. In WO 2002/046387, several domains of HPPD proteins originating from plants have been identified that may be relevant to confer tolerance to various HPPD inhibitor herbicides but neither in planta nor biochemical data have been shown to confirm the impact of the as described domain functions.
In WO 2008/150473, the combination of two distinct tolerance mechanisms - a modified Avena sativa gene coding for a mutant HPPD enzyme and a CYP450 Maize monooxygenase (nsfl gene) - was exemplified in order to obtain an improved tolerance to HPPD inhibitor herbicides, but no data have been disclosed
demonstrating the synergistic effects based on the combination of both proteins. Further, in US201 10173718, a method to generate plants tolerant to HPPD inhibitors by overexpressing not only a gene coding for a tolerant HPPD, as for example from Avena sativa, but also in combination with several plant genes coding for an HST (homogentisate solanesyltransferase) protein. However, the level of tolerance to some selected HPPD inhibitor herbicide is rather limited.
In WO201 1094199 and US201 10185444, the tolerance of several hundred of soybean wild type lines to HPPD inhibitor isoxaflutole was evaluated. Very few events displayed reasonable level of tolerance to the herbicides. The putative QTL (quantitative trait loci) responsible for the tolerance was identified. In this region of the genome, a gene coding for an ABC transporter was identified as beeing the main responsible trait for the improved tolerance to HPPD inhibitor herbicde observed. However, transgenic plants expressing the identifed genes did not displayed any improvement of the tolerance to the tested HPPD inhibitor herbicides.
In WO2010085705, several mutants of the Avena sativa HPPD have been disclosed. It has been shown that some of the variants displayed improved tolerance in vitro to the triketone "mesotrione", however, only very few mutants were expressed in tobacco plants. Additionally, none of the tobacco plants expressing these mutants displayed improved tolerance to mesotrione or isoxaflutole compared to tobacco plants expressing the wild type Avena sativa HPPD gene. Despite these successes obtained for the development of plants showing tolerance to several HPPD inhibitors herbicides described above, it is still necessary to develop and/or improve the tolerance of plants to newer or to several different HPPD inhibitors, particularly HPPD inhibitors belonging to the classes of the triketones (e.g.sulcotrione, mesotrione, tembotrione, benzobicyclon and bicyclopyrone), the pyrazolinates (e.g., topramezone and pyrasulfotole), N-(1 ,2,5-Oxadiazol-3-yl)benzamides (WO
201 1 /035874), and N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides
(WO2012/028579 (PCT/EP201 1 /064820)). Description
The present invention therefore relates to the generation of transgenic plants containing a gene encoding an HPPD protein obtainable or obtained from an organism belonging to family of mycobacteriaceae, and variants or mutants thereof, more especially to a gene from an organism belonging to the family of
mycobacteriaceae, variants or mutants thereof coding for an HPPD enzyme showing the properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which plants are less sensitive to one or more HPPD inhibitors compared to plants not containing any such HPPD encoding transgene.
The genes from mycobacteriaceae coding for HPPD proteins were selected as excellent HPPD-inhibitor tolerant candidates due to their high divergences in the amino acids composition at positions relevant for HPPD inhibitor tolerance as determined experimentally and structurally in the HPPD protein compared to the sensitive Arabidopsis thaliana HPPD protein which was taken as the HPPD-inhibitor herbicide sensitive reference molecule.
More especially, the present invention therefore relates to the generation of transgenic plants containing a gene obtainable or obtained from an organism belonging to the family mycobacteriaceae, especially from the genus Amycolicicoccus, more especially obtained from the species Amycolicicoccus subflavus, variants or mutants thereof, coding for an HPPD enzyme showing the properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which are less sensitive to one or more HPPD inhibitors compared to plants not containing any such HPPD transgene.
In one embodiment, this invention relates to an HPPD protein named herein "the HPPD protein of this invention" or "the Amycolici coccus HPPD protein", which is an HPPD protein with at least 88 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particularly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22.
In a further embodiment, the invention relates to an HPPD protein named herein "the HPPD protein of this invention" or "the Amycolici coccus HPPD protein", which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, and in which any amino acids from position 207 to position 401 of SEQ ID No. 17 can be amended by any naturally occurring amino acid, preferably it can be any conservative substitution.
In a further embodiment, the invention relates to an HPPD protein named herein "the HPPD protein of this invention" or "the Amycolicicoccus HPPD protein", which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, and having one or more of the following amino acids at the position defined by its number (relating to the number of SEQ ID No. 17) given in brackets, i.e. His(205), Ser(248), Asn(263), Gln(287), His(288), Tyr(317), Gln(354), Phe(367), Glu(369), Gly(380), and Asn(383). In a further embodiment, the invention relates to an HPPD protein named herein "the HPPD protein of this invention" or "the Amycolicicoccus HPPD protein", which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, and at the respective positions given in the second column of Table (i) the originally occuring amino acids can substituted by any of the amino acids listed in column 3 of Table (i).
Table (i):
Amino Position
acid in in SEQ
SEQ ID ID
No.17 No.17 Substitutions
Val 207 Thr, Cys, Ala, Giy
Phe, He, Leu, Val, Ala, Gin, Glu, Asp, Gly, Thr, Ser, Arg, Lys,
Met 231 Tyr
Ala 232 Trp, lie, Leu, Ser, Arg, Lys, His, Asp, Glu, Pro, Gly, Asn
Phe 234 Ala, Val, lie, Leu, Trp, Met, Gin, His
Leu 246 Met, Val
Lys 249 Ala, Leu, Met, lie, Val, Arg, Gin, Tyr
Val 251 Leu, Met, lie, Ala
Ser 252 Ala, Thr, Val, Arg, Lys, Glu, Leu, He, Met, His
Ala 386 Glu, Gin, Ser, Val, Phe, Thr
Leu 387 Arg Table (ii):
Figure imgf000011_0001
In a further embodiment, the invention relates to an HPPD protein named herein "the HPPD protein of this invention" or "the Amycolicicoccus HPPD protein", which is an HPPD protein with at least 84 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22 and at the respective positions given in the second column of Table (ii) the originally occuring amino acids can substituted by any of the amino acids listed in column 3 of Table (ii).
Table (iii)
Amino Position
acid in in SEQ
SEQ ID ID
No.17 No.17 Substitutions
Glu 233 Ser, Thr, Arg, Tyr
Val 250 Ala
Pro 261 Ala, Val, Thr
Leu 31 1 Met Amino Position
acid in in SEQ
SEQ ID ID
No.17 No.17 Substitutions
Leu 343 Met
He 381 Ala, Val, Leu, Lys
Giy 382 Ala
In a further embodiment, the invention relates to an HPPD protein named herein "the HPPD protein of this invention" or "the Amycolicicoccus HPPD protein", which is an HPPD protein with at least 88 %, at least 85 %, at least 90 %, at least 95 %; at least 97 %; at least 98 %, or at least 99 % amino acid sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , particurlarly to the amino acid sequence of any one of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, and at the respective positions given in the second column of Table (iii) the originally occuring amino acids can substituted by any of the amino acids listed in column 3 of Table (iii).
This invention includes a protein with amino acids substituted, deleted or added compared to the sequence of SEQ ID No. 17 from amino acid position 2 to amino acid position 401 , such as a transit peptide fusion protein, or a protein with amino acid changes in the sequence of SEQ ID No. 17 that retains the enzymatic function of an HPPD protein, and that still confers HPPD tolerance when expressed in plants, preferably HPPD tolerance of comparable range to that conferred by the protein of SEQ ID No. 17. This includes variant or mutant proteins derived from the protein of SEQ ID No. 17, such as any of the proteins of SEQ ID Nos:17, 18, 19, 20, 21 , and 22, particularly such mutant or variant which is less sensitive than the host plant's endogenous HPPD to one or more HPPD inhibitor herbicide(s) selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3- yl)benzamides, and N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides or pyrazolinates , preferably such mutant or variant which confers agronomically relevant herbicide tolerance to a host plant expressing it when an HPPD inhibitor herbicide of the class of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides
and/or pyrazolinates, particularly any one of mesotrione, tembotrione, isoxaflutole or bicyclopyrone is applied on such plants, more particularly when applied post- emergence. This also includes a protein comprising an active portion of the sequence of SEQ ID No.17, which portion confers HPPD inhibitor tolerance when expressed in plants. This includes a protein with substantially the same amino acid sequence as the sequence of SEQ ID No.17, such as a protein with the amino acid sequence of any one of SEQ ID Nos. 17 to 22. This includes isolated proteins as defined below, and also proteins, such as the protein of SEQ ID No. 17 wherein certain amino acids have been replaced by similar amino acids as defined below, preferably conservative amino acid substitutions. Also included herein as HPPD proteins of this invention are HPPD proteins comprising the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to 401 , but wherein 1 -20, 1 -15, 1 -10, or 1 , 2, 3, 4, 5, 6, 7, 8, or 9 amino acids have been deleted or have been substituted by other amino acids, particularly such protein which retains HPPD enzymatic activity and which confers tolerance to HPPD inhibitor herbicides when expressed in a host plant. Included herein are HPPD proteins encoded by DNA sequences homologous to the DNA sequences of the invention as described below, or HPPD proteins encoded by a DNA sequence which hybridizes to at least a portion (of at least 20-30 nucleotides) of the DNA of SEQ ID No. 1 , or which is obtainable using a primer based on SEQ ID No. 1 , or HPPD proteins with at least 88 % sequence identity to SEQ ID No. 17 which are encoded by a DNA sequence found in the genome sequence of a microorganism, particularly a
microorganism of the family mycobacteriaceae. Included herein as an HPPD protein of this invention is a Amycolici coccus HPPD protein which confers herbicide tolerance to plants when expressed in such plants, wherein such tolerance is observed to one or more HPPD inhibitor(s) selected from the group consisting of mesotrione, tembotrione, topramezone, pyrasulfotole, isoxaflutole, N-(1 ,2,5-oxadiazol-3-yl)benzamides, and N- (tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, bicyclopyrone, particularly such HPPD protein is a Amycolicicoccus subflavus, HPPD protein, such as a protein comprising the sequence of SEQ ID No. 17 from amino acid position 2 to 401 . This includes the mutant or variant HPPD proteins as described further below.
The present invention includes and provides an antibody capable of specifically binding a substantially purified protein comprising an amino acid sequence selected from the group consisting of SEQ ID Nos. 17, 18, 19, 20, 21 , and 22 preferably SEQ ID No. 22, or derived sequences thereof according to amino acid replacement as disclosed in one or more of tables (i), (ii), or (iii), above. A further aspect of the invention concerns antibodies, single-chain antigen binding molecules, or other proteins that specifically bind to one or more of the protein or peptide molecules of the invention and their homologs, fusions or fragments.
In a particularly preferred embodiment, the antibody specifically binds to a protein having the amino acid sequence set forth in SEQ ID Nos. 17-22 or a fragment thereof, or derived sequences thereof according to amino acid replacement as disclosed in one or more of tables (i), (ii), or (iii), above.
In another embodiment, the antibody specifically binds to a fusion protein comprising an amino acid sequence selected from the amino acid sequence set forth in SEQ ID Nos. 17-22 or a fragment thereof. In another embodiment the antibody specifically binds to a fusion protein comprising an amino acid sequence selected from the amino acid sequence set forth in SEQ ID Nos. 17-22 or a fragment thereof, or derived sequences thereof according to amino acid replacement as disclosed in one or more of tables (i), (ii), or (iii), above.
Antibodies of the invention may be used to quantitatively or qualitatively detect the protein or peptide molecules of the invention, or to detect post translational modifications of the proteins. As used herein, an antibody or peptide is said to
"specifically bind" to a protein or peptide molecule of the invention if such binding is not competitively inhibited by the presence of non-related molecules. In another embodiment this invention relates to an HPPD nucleic acid or DNA, named herein "the HPPD nucleic acid/DNA of this invention", which is a nucleic acid or DNA encoding an HPPD of this invention as defined above. This includes a DNA which comprises a nucleotide sequence selected from the group consisting of the sequence of SEQ ID No. 1 from nucleotide position 4 to nucleotide position 1206, the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209, or the sequence of SEQ ID No. 3 from nucleotide position 139 to nucleotide position 1341 , or the sequence of SEQ ID No. 12 from nucleotide position 382 to nucleotide position 1584, or the sequence of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 , or the sequence of SEQ ID No. 16 from nucleotide position 376 to nucleotide position 1578, or the sequence of SEQ ID No. 29 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 30 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 31 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 32 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 33 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 34 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 35 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 36 from nucleotide position 4 to 1206, or the sequence of SEQ ID No. 37 from nucleotide position 376 to 1578, or which comprises a DNA region which encodes an HPPD, or a DNA which is sufficiently complementary to another DNA so that when it is incubated at a temperature of between 60 and 65° C in 5xSSC (1 xSSC (single-strength sodium citrate) means = 0.15M NaCI, 0.015 M tri sodium-citrate, 50 mM sodium phosphate pH 7.6), containing 0.1 % SDS followed by rinsing at the same temperature with 5xSSC containing 0.1 % SDS, it still hybridizes with a sequence selected from the group consisting of SEQ ID Nos. 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37. When the test and inventive sequences are double stranded the nucleic acid constituting the test sequence preferably has a TM (melting/dissociating temperature) within 10° C. of that of the sequence selected from the group consisting of SEQ ID Nos1 , 2, 3, 12, 1 5, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37. In the case that the test and the sequence selected from the group consisting of SEQ ID Nos. 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37are mixed together and are denatured simultaneously, the TM values of the sequences are preferably within 5° C of each other. More preferably the hybridization is performed under relatively stringent hybridization conditions as defined below.
In one embodiment, a denatured test or inventive sequence is preferably first bound to a support and hybridization is effected for a specified period of time at a temperature of between 60 and 65° C in 5xSSC containing 0.1 % SDS followed by rinsing of the support at the same temperature but with O.l xSSC. Where the hybridization involves a fragment of the sequence selected from the group consisting of SEQ ID Nos. 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37 the hybridization conditions may be less stringent, as will be obvious to the skilled person.
Also included herein as HPPD DNA of this invention, are DNA sequences encoding an HPPD protein of the invention which DNA sequences have been adapted for expression in microorganisms or plants, such as by replacing native codons by codons more preferred in a host cell, or wherein certain restriction sites have been added or removed for ease of cloning, or DNA sequence with a certain number of added, replaced or deleted nucleotides. This also includes isolated DNA sequences and variant, mutant or synthetic DNAs or nucleic acids as described further below.
In a particular embodiment, the Amycolici coccus HPPD DNA of this invention is expressed in plants under the control of a promoter that allows expression of exogenous genes in plants. In a further particular embodiment, at the N-terminus of the so expressed HPPD enzyme a signal transit peptide, such as a transit peptide is located, preferably a plastid transit peptide, such as a chloroplast transit peptide of about 30 to about 125 amino acids, preferably 125 amino acids, most preferably present as a double transit peptide, such as an optimized transit peptide of which the first part is originated from sunflower (Helianthus annuus) and the second part from Zea mays (described in US patent 5,188,642) or a plastid transit peptide of that of the plant ribulose biscarboxylase/oxygenase small subunit (RuBisCO ssu), where appropriate including a few amino acids of the N-terminal part of the mature RuBisCO ssu (EP 189 707).
In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is derived or is obtainable from SEQ ID No. 1 and is optimized for the expression in E. coli, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined). In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is derived from SEQ ID No. 1 and is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 (including the positions defined).
In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is derived from SEQ ID No. 1 and is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 37 from nucleotide position 376 to nucleotide position 1578 (including the positions defined).
In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is derived from SEQ ID No. 1 and is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 29, 30, 31 , 32, 33, 34, 35, or 36 from nucleotide position 4 to nucleotide position 1206 (including the positions defined).
In a further particular embodiment, the HPPD of the invention, such as the HPPD comprising the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to amino acid position 401 , or the HPPD comprising the amino acid sequence of any one of SEQ ID Nos. 17 to 22, is less sensitive than the host plant endogenous HPPD to one or more HPPD inhibitor herbicides selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazolinates, or, preferably less sensitve to one or more HPPD inhibitor herbicide(s) selected from the group consisting of isoxaflutole, tembotrione, mesotrione, sulcotrione, pyrasulfotole, topramezone, 2-cyano-3-cyclopropyl-1 -(2-S02CH3-4-CF3phenyl)propane-1 ,3-dione and 2-cyano-3-cyclopropyl-1 -(2-S02CH3-4-2,3 CI2 phenyl)propane-1 ,3-dione, bicyclopyrone, benzobicyclon, tefuryltrione, and pyrazoxyfen.
In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in E. coli, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N- (triazol-3-yl)arylcarboxamides or pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate and benzofenap.
In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate and benzofenap.
In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 29, 30, 31 , 32, 33, 35 or 36 from nucleotide position 4 to nucleotide position 1206
(including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, and
pyrazoiinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate and benzofenap.
In a further particular embodiment, this invention includes a DNA encoding an HPPD protein of this invention which is optimized for the expression in plants, such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 37 from nucleotide position 376 to nucleotide position 1578 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazoiinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate and benzofenap.
In a further particular embodiment, this invention relates to plants, plant parts, plant cells, and progenies of these plants comprising a DNA encoding an HPPD protein of the invention which is optimized for the expression in E. coli, or is optimized for the expression in plants such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined) or of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 or of SEQ ID Nos. 29, 30, 31 , 32, 33, 34, 35, or 36 from nucleotide position 4 to 1206 (including the positions defined) or of SEQ ID No. 37 from nucleotide position 376 to 1578 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, and pyrazoiinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate and benzofenap.. Such plants include but are not limited to field crops, fruits and vegetables such as canola, sunflower, tobacco, sugarbeet, cotton, maize, wheat, barley, rice, sorghum, tomato, mango, peach, apple, pear, strawberry, banana, melon, potato, carrot, lettuce, cabbage, onion, soya spp, sugar cane, pea, field beans, poplar, grape, citrus, alfalfa, rye, oats, turf and forage grasses, flax and oilseed rape, and nut producing plants.
In a more particular embodiment, this invention relates to plants, plant parts, plant cells, and progenies of these plants comprising a DNA encoding an HPPD protein of the invention which is optimized for the expression in E. coli, or optimized for the expression in plants such as a codon-optimized DNA, for example a DNA comprising the sequence of SEQ ID No. 2 from nucleotide position 7 to nucleotide position 1209 (including the positions defined) or of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 (including the positions defined) of SEQ ID No. 29, 30, 31 , 32, 33, 34, 35 or 36 from nucleotide position 4 to nucleotide position 1206 (including the positions defined), or of SEQ ID No. 37 from nucleotide position 376 to nucleotide position 1 578 (including the positions defined) which encodes an HPPD less sensitive than the host plant endogenous HPPD to at least one HPPD inhibitor herbicide selected from the group consisting of isoxazoles, diketonitriles, triketones, N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, and pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione, isoxaflutole, diketonitrile, pyrasulfotole, topramezone, sulcotrione, pyrazolate, and benzofenap, and wherein the plants are selected from the group consisting of canola, sunflower, tobacco, sugarbeet, cotton, maize, wheat, barley, rice, potato, soya spp, sugar cane, pea, field beans, poplar, grape, alfalfa, rye, oats, turf and forage grasses, flax and oilseed rape, and nut producing plants, even more preferably such plants are selected from the group consisting of soya spp, rice, sugarbeet, wheat, cotton canola, oilseed rape or maize. In another particular embodiment, the HPPD protein of the invention comprises the sequence of SEQ ID No. 20, SEQ ID No. 21 or SEQ ID No. 22 all of which are less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones (named triketone HPPD inhibitor), such as
tembotrione, sulcotrione mesotrione, bicyclopyrone, tefuryltrione, particularly tembotrione, or from the group consising of diketonitrile (like isoxaflutole) or from the group consisting of pyrazolinates (named pyrazolinate HPPD inhibitor), such as pyrasulfotole, pyrazolate, topramezone, benzofenap compared to the endogenous unmutated HPPD of a plant, particularly the host plant wherein such HPPD of the invention is expressed or is to be expressed. The enzymatic activity of HPPD proteins can be measured by any method that makes it possible either to measure the decrease in the amount of the HPP or O2 substrates, or to measure the accumulation of any of the products derived from the enzymatic reaction, i.e. homogentisate or CO2. In particular, the HPPD activity can be measured by means of the method described in Garcia et al. (1997), Biochem. J. 325, 761 -769 or Garcia et al. (1999), Plant Physiol. 1 19, 1507-1516, which are incorporated herein by reference.
According to the invention, an HPPD inhibitor of the class/group of triketones (or triketone HPPD inhibitor) means an HPPD inhibitor having a triketone skeleton. As an example of such triketone HPPD inhibitor, one can cite the molecules sulcotrione [i.e. 2-[2-chloro-4-(methylsulfonyl)benzoyl]-1 ,3-cyclohexanedione], mesotrione [i.e.2-[4- (methylsulfonyl)-2-nitrobenzoyl]-1 ,3-cyclohexanedione], and tembotrione [i.e.2-[2- chloro-4-(methylsulfonyl)-3-[(2,2,2,-tri-fluoroethoxy)methyl]benzoyl]-1 ,3-cyclohexanedione], tefuryltrione [i.e. 2-{2-chloro-4-mesyl-3-[(RS)-tetrahydro-2- furylmethoxymethyl]benzoyl}cyclohexane-1 ,3-dione], bicyclopyrone [i.e. 4-hydroxy-3- {2-[(2-methoxyethoxy)methyl]-6-(trifluoromethyl)-3-pyridylcarbonyl}bicyclo[3.2.1 ]oct-3- en-2-one] , benzobicyclon [i.e. 3-(2-chloro-4-mesylbenzoyl)-2- phenylthiobicyclo[3.2.1 ]oct-2-en-4-one].
According to the invention, an HPPD of the class of pyrazolinates (or pyrazolinate HPPD inhibitor) means an HPPD inhibitor having a pyrazole radical. As an example of such pyrazolinates HPPD inhibitor, one can cite the molecules topramezone [i.e. [3- (4,5-dihydro-3-isoxazolyl)-2-methyl-4-(methylsulfonyl)phenyl](5-hydroxy-1 -methyl-1 H- pyrazol-4-yl)methanone] and pyrasulfotole [(5-hydroxy-1 ,3-dimethylpyrazol-4-yl(2- mesyl-4-trifluaromethylphenyl)methanone].
The present invention also relates to a nucleic acid sequence, particularly an isolated DNA, preferably a plant-expressible chimeric gene, which encodes the
Amycolici coccus HPPD of the invention and adapted sequences thereof.
The present invention also relates to a nucleic acid sequence encoding an HPPD enzyme of this invention which retains its properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which is less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl}- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or from the group consisting of pyrazolinates, such as pyrasulfotole and topramezone, tefuryltrione, bicyclopyrone, benzobicyclon than the endogenous unmutated plant HPPD, and of which the encoded amino acid sequence shows a sequence identity to SEQ ID No. 17 of at least 84 %, particularly at least 85%, preferably at least 90%, more preferably at least 95%, even more preferably at least 98% and most preferably at least 99%. In a more particular embodiment, the nucleic acid sequence of the invention encodes an HPPD enzyme which is less sensitive to one or more HPPD inhibitor herbicides belonging to the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione, mesotrione, bicyclopyrone, and tefuryltrione, belonging to the group consisting of isoxazoles, such as isoxaflutole, belonging to the group consisting of pyrazolinates (named pyrazolinate HPPD inhibitor), such as pyrasulfotole, pyrazolate, topramezone, benzofenap, and/or belonging to the group consisting of diketones, such as diketonitrile than the host plant endogenous HPPD. According to the present invention, a "nucleic acid sequence" is understood as being a nucleotide sequence which can be of the DNA or RNA type, preferably of the DNA type, and in particular double-stranded, whether it be of natural or synthetic origin, in particular a DNA sequence in which the codons which encode the HPPD according to the invention have been optimized in accordance with the host organism in which it is to be expressed (e.g., by replacing codons with those codons more preferred or most preferred in codon usage tables of such host organism or the group to which such host organism belongs, compared to the original or source organism).
An "isolated nucleic acid/DNA/protein", as used herein, refers to a nucleic
acid/DNA/protein which is not naturally occurring (such as an artificial or synthetic DNA with a different nucleotide sequence than the naturally occurring DNA, or a modified protein) or which is no longer in the natural environment wherein it was originally present, e.g., a DNA coding sequence associated with a heterologous regulatory element (such as a bacterial coding sequence operably linked to a plant- expressible promoter) in a chimeric gene, a DNA transferred into another host cell, such as a transgenic plant cell.
In view of a particular embodiment of the invention and the sought-after solution, i.e. an HPPD which is less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, isoxazoles, and pyrazolinates, the tolerance level measurement is analyzed using the method extensively described in WO 2009/14407 as described below using a N-(1 ,2,5-oxadiazol-3-yl)benzamides, N- (tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, isoxazoles, or pyrazolinates HPPD inhibitor, particularly less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of tembotrione, mesotrione, pyrasulfotole, topramezone sulcotrione, bicyclopyrone, diketonitrile, benzofenap, pyrazolate, and tefuryltrione.
The terminology DNA or protein "comprising" a certain sequence "X", as used throughout the text, refers to a DNA or protein including or containing at least the sequence "X", so that other nucleotide or amino acid sequences can be included at the 5' (or N-terminal) and/or 3' (or C-terminal) end, e.g. (the nucleotide sequence of) a selectable marker protein, (the nucleotide sequence of) a transit peptide, and/or a 5' leader sequence or a 3' trailer sequence. Similarly, use of the term "comprise", "comprising" or "comprises" throughout the text and the claims of this application should be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integers or steps.
In one embodiment of the invention, the coding regions encoding HPPD comprise a nucleotide sequence encoding proteins with the amino acid sequences as set forth in SEQ ID Nos 17, 18, 19, 20, 21 , and 22 such as the nucleotide sequences of SEQ ID Nos 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 32, 33, 34, 35, 36, and 37.
However, it is understood that variants of these nucleotide sequences, including insertions, deletions and substitutions thereof may be also be used to the same effect. Equally, homologues to the mentioned nucleotide sequences from species different from Blepharisma can be used.
Variants of the described nucleotide sequence coding for an HPPD protein having a sequence identity which is preferably at least 84%, or 85 or 90% or at least 95% with identified nucleotide sequences encoding HPPD enzymes such as the ones identified in the sequence listing.
A protein with "substantially the same amino acid sequence" to a protein as described in present invention, as used herein, refers to a protein with at least 90 %, particularly at least 95 %, preferably at least 97 % sequence identity with a protein according to the invention, wherein the percentage sequence identity is determined by using the "blosum62 scoring matrix" in the GAP program of the Wisconsin package of GCG (Madison, Wisconsin, USA), version 10.0 (GCG defaults used). "Sequence identity", as used throughout this application, when related to proteins, refers to the percentage of identical amino acids using this specified analysis. The "sequence identity", as used herein, when related to DNA sequences, is determined by using the "nwsgapdna scoring matrix" in the GAP program of the Wisconsin package of GCG (Madison, Wisconsin, USA), version 10.0 (GCG defaults used). For the purpose of this invention, the "sequence identity" of two related nucleotide or amino acid sequences, expressed as a percentage, refers to the number of positions in the two optimally aligned sequences which have identical residues (x100) divided by the number of positions compared. A gap, i.e. a position in an alignment where a residue is present in one sequence but not in the other, is regarded as a position with non-identical residues. The alignment of the two sequences is performed by the Needleman and Wunsch algorithm . The computer-assisted sequence alignment above, can be conveniently performed using standard software program such as GAP which is part of the Wisconsin Package Version 10.1 (Genetics Computer Group, Madision, Wisconsin, USA) using the default scoring matrix with a gap creation penalty of 50 and a gap extension penalty of 3.
Nucleotide sequences homologous to the nucleotide sequences encoding an HPPD enzyme according to the invention may be identified by in silico analysis of genomic sequence data.
Homologous nucleotide sequence may also be identified and isolated by hybridization under stringent conditions using as probes identified nucleotide sequences encoding HPPD enzymes according to the invention or parts thereof. Such parts should preferably have a nucleotide sequence comprising at least 40 consecutive nucleotides from the coding region of HPPD encoding genes sequences according to the invention, preferably from the coding region of SEQ ID No. 1 , SEQ ID No. 2,
SEQ ID No. 3. SEQ ID No. 12, SEQ ID No. 15, SEQ ID No. 16, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31 , SEQ ID No. 32, SEQ ID No. 33, SEQ ID No. 34,
SEQ ID No. 35, SEQ ID No. 36, and SEQ ID No. 37. The probes may however comprise longer regions of nucleotide sequences derived from the HPPD encoding nucleic acids, such as about 50, 60, 75, 100, 200 or 500 consecutive nucleotides from any of the mentioned HPPD genes. Preferably, the probe should comprise a nucleotide sequence coding for a highly conserved region which may be identified by aligning the different HPPD proteins.
"Stringent hybridization conditions" as used herein means that hybridization will generally occur if there is at least 95% and preferably at least 97% sequence identity between the probe and the target sequence. Examples of stringent hybridization conditions are overnight incubation in a solution comprising 5xSSC (150 mM NaCI, 15 mM tri sodium-citrate), 50 mM sodium phosphate (pH 7.6), 5x Denhardt's solution, 10% dextran sulfate, and 20 pg/ml denatured, sheared carrier DNA such as salmon sperm DNA, followed by washing the hybridization support in 0.1 x SSC at approximately 65 °C, preferably twice for about 10 minutes. Other hybridization and wash conditions are well known and are exemplified in Sambrook et al, Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor, NY (1989), particularly chapter 1 1 .
Such variant sequences may also be obtained by DNA amplification using
oligonucleotides specific for HPPD genes encoding enzymes as primers, such as but not limited to oligonucleotides comprising about 20 to about 50 consecutive nucleotides selected from the nucleotide sequences of SEQ ID Nos. 1 , 2, 3, 12, 15, 16, 29, 30, 31 , 33, 34, 35, 36, and 37 or their complement.
The invention also encompasses variant HPPD enzymes which are amino acid sequences similar to the HPPD amino acid sequence of SEQ ID No. 17 wherein one or more amino acids have been inserted, deleted or substituted. In the present context, variants of an amino acid sequence refer to those polypeptides, enzymes or proteins which have a similar catalytic activity as the amino acid sequences described herein, notwithstanding any amino acid substitutions, additions or deletions thereto. Preferably the variant amino acid sequence has a sequence identity of at least about 84%, or 85 or 90% or 95% with the amino acid sequence of SEQ ID No. 17. Also preferably, a polypeptide comprising the variant amino acid sequence has HPPD enzymatic activity. Methods to determine HPPD enzymatic activity are well known in the art and include assays as extensively described in WO 2009/144079 or in WO 2002/046387. Substitutions encompass amino acid alterations in which an amino acid is replaced with a different naturally-occurring or a non-conventional amino acid residue. Such substitutions may be classified as "conservative', in which an amino acid residue contained in an HPPD protein of this invention is replaced with another naturally- occurring amino acid of similar character, for example Gly* *Ala, Val< >lle< >Leu, Asp< *Glu, Lys< >Arg, Asn< >Gln or Phe* *Trp< >Tyr. Substitutions encompassed by the present invention may also be "non-conservative", in which an amino acid residue which is present in an HPPD protein of the invention is substituted with an amino acid with different properties, such as a naturally-occurring amino acid from a different group (eg. substituting a charged or hydrophobic amino acid with alanine. Amino acid substitutions are typically of single residues, but may be of multiple residues, either clustered or dispersed. Amino acid deletions will usually be of the order of about 1 -10 amino acid residues, while insertions may be of any length. Deletions and insertions may be made to the N-terminus, the C-terminus or be internal deletions or insertions. Generally, insertions within the amino acid sequence will be smaller than amino- or carboxy-terminal fusions and of the order of 1 to 4 amino acid residues. "Similar amino acids", as used herein, refers to amino acids that have similar amino acid side chains, i.e. amino acids that have polar, non-polar or practically neutral side chains. "Non- similar amino acids", as used herein, refers to amino acids that have different amino acid side chains, for example an amino acid with a polar side chain is non-similar to an amino acid with a non-polar side chain. Polar side chains usually tend to be present on the surface of a protein where they can interact with the aqueous environment found in cells ("hydrophilic" amino acids). On the other hand, "non-polar" amino acids tend to reside within the center of the protein where they can interact with similar non-polar neighbours ("hydrophobic" amino acids"). Examples of amino acids that have polar side chains are arginine, asparagine, aspartate, cysteine, glutamine, glutamate, histidine, lysine, serine, and threonine (all hydrophilic, except for cysteine which is hydrophobic). Examples of amino acids that have non-polar side chains are alanine, glycine, isoleucine, leucine, methionine, phenylalanine, proline, and tryptophan (all hydrophobic, except for glycine which is neutral).
Also encompassed by the present invention are antibodies which specifically recognize an HPPD enzyme according to the invention. The invention also relates to the use, in a method for transforming plants, of a nucleic acid which encodes an HPPD according to the invention as a marker gene or as a coding sequence which makes it possible to confer to the plant tolerance to herbicides which are HPPD inhibitors, and the use of one or more HPPD inhibitors on plants comprising a nucleic acid sequence encoding a HPPD according to the invention.
In an embodiment of this invention, such HPPD inhibitors to be used are selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N- (triazol-3-yl)arylcarboxamides, triketones or pyrazolinates, preferably selected from the group consisting of tembotrione, mesotrione, sulcotrione, bicyclopyrone, and tefuryltrione. It is, of course, understood that this sequence can also be used in combination with (an) other gene marker(s) and/or sequence(s) which encode(s) one or more protein with useful agricultural properties. In the commercial production of crops, it is desirable to eliminate under reliable pesticidial management unwanted plants (i.e., "weeds") from a field of crop plants. An ideal treatment would be one which could be applied to an entire field but which would eliminate only the unwanted plants while leaving the crop plants unaffected. One such treatment system would involve the use of crop plants which are tolerant to an herbicide so that when the herbicide is sprayed on a field of herbicide-tolerant crop plants, the crop plants would continue to thrive while non-herbicide-tolerant weeds are killed or severely damaged. Ideally, such treatment systems would take advantage of varying herbicide properties so that weed control could provide the best possible combination of flexibility and economy. For example, individual herbicides have different longevities in the field, and some herbicides persist and are effective for a relatively long time after they are applied to a field while other herbicides are quickly broken down into other and/or non-active compounds. An ideal treatment system would allow the use of different herbicides so that growers could tailor the choice of herbicides for a particular situation.
While a number of herbicide-tolerant crop plants are presently commercially available, one issue that has arisen for many commercial herbicides and herbicide/crop combinations is that individual herbicides typically have incomplete spectrum of activity against common weed species. For most individual herbicides which have been in use for some time, populations of herbicide resistant weed species and biotypes have become more prevalent (see, e.g., Tranel and Wright (2002), Weed Science 50: 700-712; Owen and Zelaya (2005), Pest Manag. Sci. 61 : 301 -31 1 ).
Transgenic plants which are resistant to more than one herbicide have been described (see, e.g., W02005/012515). However, improvements in every aspect of crop production, weed control options, extension of residual weed control, and improvement in crop yield are continuously in demand.
The HPPD protein or gene of the invention is advantageously combined in plants with other genes which encode proteins or RNAs that confer useful agronomic properties to such plants. Among the genes which encode proteins or RNAs that confer useful agronomic properties on the transformed plants, mention can be made of the DNA sequences encoding proteins which confer tolerance to one or more herbicides that, according to their chemical structure, differ from HPPD inhibitor herbicides, and others which confer tolerance to certain insects, those which confer tolerance to certain diseases, DNAs that encode RNAs that provide nematode or insect control, etc.
Such genes are in particular described in published PCT Patent Applications WO 91 /02071 and WO95/06128.
Among the DNA sequences encoding proteins which confer tolerance to certain herbicides on the transformed plant cells and plants, mention can be made of a bar or PAT gene or the Streptomyces coelicolor gene described in WO2009/152359 which confers tolerance to glufosinate herbicides, a gene encoding a suitable EPSPS which confers tolerance to herbicides having EPSPS as a target, such as glyphosate and its salts (US 4,535,060, US 4,769,061 , US 5,094,945, US 4,940,835, US 5,188,642, US 4,971 ,908, US 5,145,783, US 5,310,667, US 5,312,910, US 5,627,061 , US
5,633,435), or a gene encoding glyphosate oxydoreductase (US 5,463, 175).
Among the DNA sequences encoding a suitable EPSPS which confer tolerance to the herbicides which have EPSPS as a target, mention will more particularly be made of the gene which encodes a plant EPSPS, in particular maize EPSPS, particularly a maize EPSPS which comprises two mutations, particularly a mutation at amino acid position 102 and a mutation at amino acid position 106 (WO 2004/074443), and which is described in Patent Application US patent 6,566,587, hereinafter named double mutant maize EPSPS or 2mEPSPS, or the gene which encodes an EPSPS isolated from Agrobacterium and which is described by SEQ ID No. 2 and SEQ ID No. 3 of US Patent 5,633,435, also named CP4.
Among the DNA sequences encoding a suitable EPSPS which confer tolerance to the herbicides which have EPSPS as a target, mention will more particularly be made of the gene which encodes an EPSPS GRG23 from Arthrobacter globiformis, but also the mutants GRG23 ACE1 , GRG23 ACE2, or GRG23 ACE3, particularly the mutants or variants of GRG23 as described in WO2008/100353, such as GRG23(ace3)R173K of SEQ ID No. 29 in WO2008/100353.
In the case of the DNA sequences encoding EPSPS, and more particularly encoding the above genes, the sequence encoding these enzymes is advantageously preceded by a sequence encoding a transit peptide, in particular the "optimized transit peptide" described in US Patent 5,510,471 or 5,633,448.
In WO 2007/024782, plants being tolerant to glyphosate and at least one ALS
(acetolactate synthase) inhibitor are disclosed. More specifically plants containing genes encoding a GAT (Glyphosate-N-Acetyltransferase) polypeptide and a polypeptide conferring resistance to ALS inhibitors are disclosed.
In US 6855533, transgenic tobacco plants containing mutated Arabidopsis ALS/AHAS genes were disclosed.
In US 6, 153,401 , plants containing genes encoding 2,4-D-monooxygenases conferring tolerance to 2,4-D (2,4-dichlorophenoxyacetic acid) by metabolisation are disclosed. In US 2008/01 19361 and US 2008/0120739, plants containing genes encoding Dicamba monooxygenases conferring tolerance to dicamba (3,6-dichloro-2- methoxybenzoic acid) by metabolisation are disclosed. All the above mentioned herbicide tolerance traits can be combined with those performing HPPD tolerance which are subject matter of this invention. Among the DNA sequences encoding proteins concerning properties of tolerance to insects, mention will more particularly be made of the Bt proteins widely described in the literature and well known to those skilled in the art. Mention will also be made of proteins extracted from bacteria such as Photorhabdus (WO 97/17432 & WO
98/08932).
Among such DNA sequences encoding proteins of interest which confer novel properties of tolerance to insects, mention will more particularly be made of the Bt Cry or VIP proteins widely described in the literature and well known to those skilled in the art. These include the Cry1 F protein or hybrids derived from a Cry1 F protein (e.g., the hybrid Cry1 A-Cry1 F proteins described in US 6,326, 169; US 6,281 ,016; US
6,218,188, or toxic fragments thereof), the Cry1 A-type proteins or toxic fragments thereof, preferably the CrylAc protein or hybrids derived from the Cry1 Ac protein (e.g., the hybrid Cry1Ab-Cry1 Ac protein described in US 5,880,275) or the Cryl Ab or Bt2 protein or insecticidal fragments thereof as described in EP451878, the Cry2Ae, Cry2Af or Cry2Ag proteins as described in WO02/057664 or toxic fragments thereof, the Cry1 A.105 protein described in WO 2007/140256 (SEQ ID No. 7) or a toxic fragment thereof, the VIP3Aa19 protein of NCBI accession ABG20428, the VIP3Aa20 protein of NCBI accession ABG20429 (SEQ ID No. 2 in WO 2007/142840), the VIP3A proteins produced in the COT202 or COT203 cotton events (WO 2005/054479 and WO 2005/054480, respectively), the Cry proteins as described in WO01 /47952, the VIP3Aa protein or a toxic fragment thereof as described in Estruch et al. (1996), Proc Natl Acad Sci U S A. 28;93(1 1 ):5389-94 and US 6,291 ,156, the insecticidal proteins from Xenorhabdus (as described in WO98/50427), Serratia (particularly from S.
entomophila) or Photorhabdus species strains, such as Tc-proteins from
Photorhabdus as described in WO98/08932 (e.g., Waterfield et al. (2001 ), Appl
Environ Microbiol. 67(1 1 ):5017-24; Ffrench-Constant and Bowen (2000), Cell Mol Life Sci.; 57(5):828-33). Also any variants or mutants of any one of these proteins differing in some (1 -10, preferably 1 -5) amino acids from any of the above sequences, particularly the sequence of their toxic fragment, or which are fused to a transit peptide, such as a plastid transit peptide, or another protein or peptide, is included herein. The present invention also relates to a chimeric gene (or expression cassette) which comprises a coding sequence as well as heterologous regulatory elements, at the 5' and/or 3' position, at least at the 5' position, which are able to function in a host organism, in particular plant cells or plants, with the coding sequence containing at least one nucleic acid sequence which encodes an HPPD as previously defined.
In a particular embodiment, the present invention relates to a chimeric gene as previously described, wherein the host organism is selected from bacteria, yeast, Pichia, fungi, baculovirus, in vitro cells, protoplasts, plant cells, plants, plant parts, and plant seeds thereof.
In another particular embodiment, the present invention relates to a chimeric gene as previously described, wherein the chimeric gene contains in the 5' position of the nucleic acid sequence which encodes a HPPD according to the invention, a nucleic acid sequence which encodes a plant transit peptide, with this sequence being arranged between the promoter region and the sequence encoding the HPPD according to the invention so as to permit expression of a transit peptide/HPPD fusion protein. In a further particular embodiment, the present invention relates to the use of HPPD inhibitor herbicides on plants, plant parts, or plant seeds comprising HPPD tolerant gene according to the invention, or to the use of HPPD inhibitor herbicides on soil where such plants, plant parts or seeds are to be grown or sown, either alone or in combination with one or more other known herbicides acting in a different matter to HPPD inhibitors. In a more particular embodiment, the employed HPPD inhibitor herbicide is selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides,
triketones (named triketone HPPD inhibitor), such as tembotrione, sulcotrione mesotrione, bicyclopyrone, tefuryltrione, particularly tembotrione, of the class diketone such as diketonitrile of the class of isoxazoles such as isoxaflutole or of the class of pyrazolinates (named pyrazolinate HPPD inhibitor), such as pyrasulfotole, pyrazolate, topramezone, benzofenap, even more specifically present invention relates to the application of tembotrione, mesotrione, diketonitrile, bicyclopyrone, tefuryltrione, benzofenap, pyrasulfotole, pyrazolate and sulcotrione to such HPPD inhibitor tolerant plants, plant parts or plant seeds. As a regulatory sequence which functions as a promoter in plant cells and plants, use may be made of any promoter sequence of a gene which is naturally expressed in plants, in particular a promoter which is expressed especially in the leaves of plants, such as for example "constitutive" promoters of bacterial, viral or plant origin, or "light- dependent" promoters, such as that of a plant ribulose-biscarboxylase/oxygenase (RuBisCO) small subunit gene, or any suitable known promoter-expressible which may be used. Among the promoters of plant origin, mention will be made of the histone promoters as described in EP 0 507 698 A1 , the rice actin promoter (US 5,641 ,876), or a plant ubiquitin promoter (US 5,510,474). Among the promoters of a plant virus gene, mention will be made of that of the cauliflower mosaic virus (CaMV 19S or 35S, Sanders et al. (1987), Nucleic Acids Res. 15(4): 1543-58.), the circovirus (AU 689 31 1 ) or the Cassava vein mosaic virus (CsVMV, US 7,053,205).
In one embodiment of this invention, a promoter sequence specific for particular regions or tissues of plants can be used to express the HPPD proteins of the invention, such as promoters specific for seeds (Datla, R. et al. (1997), Biotechnology Ann. Rev. 3, 269-296), especially the napin promoter (EP 255 378 A1 ), the phaseolin promoter, the glutenin promoter, the helianthinin promoter (WO 92/17580), the albumin promoter (WO 98/45460), the oleosin promoter (WO 98/45461 ), the SAT1 promoter or the SAT3 promoter (PCT/US98/06978).
Use may also be made of an inducible promoter advantageously chosen from the phenylalanine ammonia lyase (PAL), HMG-CoA reductase (HMG), chitinase, glucanase, proteinase inhibitor (PI), PR1 family gene, nopaline synthase (nos) and vspB promoters (US 5 670 349, Table 3), the HMG2 promoter (US 5 670 349), the apple beta-galactosidase (ABG1 ) promoter and the apple aminocyclopropane carboxylate synthase (ACC synthase) promoter (WO 98/45445). According to the invention, use may also be made, in combination with the promoter, of other regulatory sequences, which are located between the promoter and the coding sequence, such as transcription activators ("enhancers"), for instance the translation activator of the tobacco mosaic virus (TMV) described in Application WO 87/07644, or of the tobacco etch virus (TEV) described by Carrington and Freed (1990), J. Virol. 64: 1 590-1597, for example, or introns such as the adhl intron of maize or intron 1 of rice actin.
In a further particular embodiment, the gene of the invention is present in plants in multiple, preferably two copies, each of these controlled by a different plant expressible promoter.
In a further particular embodiment, the chimeric gene of the invention can be combined with any further chimeric gene coding for an HPPD protein, preferably these different genes are controlled by different regulatory elements being active in plants.
In a further particular embodiment, the chimeric gene of the invention can be combined with a CYP450 Maize monooxygenase (nsfl gene) gene being under the control of an identical or different plant expressible promoter.
As a regulatory terminator or polyadenylation sequence, use may be made of any corresponding sequence of bacterial origin, such as for example the nos terminator of Agrobacterium tumefaciens, of viral origin, such as for example the CaMV 35S terminator, or of plant origin, such as for example a histone terminator as described in published Patent Application EP 0 633 317 A1 .
The term "gene", as used herein refers to a DNA coding region flanked by 5' and/or 3' regulatory sequences allowing a RNA to be transcribed which can be translated to a protein, typically comprising at least a promoter region. A "chimeric gene", when referring to an HPPD encoding DNA of this invention, refers to an HPPD encoding DNA sequence having 5' and/or 3' regulatory sequences different from the naturally occurring protist 5' and/or 3' regulatory sequences which drive the expression of the HPPD protein in its native host cell (also referred to as "heterologous promoter" or "heterologous regulatory sequences").
The terms "DNA/protein comprising the sequence X" and "DNA/protein with the sequence comprising sequence X", as used herein, refer to a DNA or protein including or containing at least the sequence X in their nucleotide or amino acid sequence, so that other nucleotide or amino acid sequences can be included at the 5' (or N- terminal) and/or 3' (or C-terminal) end, e.g., a N-terminal transit or signal peptide. The term "comprising", as used herein, is open-ended language in the meaning of
"including", meaning that other elements then those specifically recited can also be present. The term "consisting of, as used herein, is closed-ended language, i.e., only those elements specifically recited are present. The term "DNA encoding a protein comprising sequence X", as used herein, refers to a DNA comprising a coding sequence which after transcription and translation results in a protein containing at least amino acid sequence X. A DNA encoding a protein need not be a naturally occurring DNA, and can be a semi-synthetic, fully synthetic or artificial DNA and can include introns and 5' and/or 3' flanking regions. The term "nucleotide sequence", as used herein, refers to the sequence of a DNA or RNA molecule, which can be in single- or double-stranded form. HPPD proteins according to the invention may be equipped with a signal peptide according to procedures known in the art, see, e.g., published PCT patent application WO 96/10083, or they can be replaced by another peptide such as a chloroplast transit peptide (e.g., Van Den Broeck et al. (1985), Nature, 313, 358, or a modified chloroplast transit peptide of US patent 5, 510,471 ) causing transport of the protein to the chloroplasts, by a secretory signal peptide or a peptide targeting the protein to other plastids, mitochondria, the ER, or another organelle, or it can be replaced by a methionine amino acid or by a methionine-alanine dipeptide. Signal sequences for targeting to intracellular organelles or for secretion outside the plant cell or to the cell wall are found in naturally targeted or secreted proteins, preferably those described by Klosgen et al. (1989), ol. Gen. Genet. 217, 155-161 , Klosgen and Weil (1991 ), Mol. Gen. Genet. 225, 297-304, Neuhaus & Rogers (1998), Plant Mol. Biol. 38, 127-144, Bih et al. (1999), J. Biol. Chem. 274, 22884-22894, Morris et al. (1999), Biochem. Biophys. Res. Commun. 255, 328-333, Hesse et al. (1989), EMBO J. 8 2453-2461 , Tavladoraki et al. (1998), FEBS Lett. 426, 62-66, Terashima et al. (1999), Appl.
Microbiol. Biotechnol. 52, 516-523, Park et al. (1997), J. Biol. Chem. 272, 6876-6881 , Shcherban et al. (1995), Proc. Natl. Acad. Sci USA 92, 9245-9249, all of which are incorporated herein by reference, particularly the signal peptide sequences from targeted or secreted proteins of corn, cotton, soybean, or rice. A DNA sequence encoding such a plant signal peptide can be inserted in the chimeric gene encoding the HPPD protein for expression in plants. Unless otherwise stated in the examples, all procedures for making and manipulating recombinant DNA are carried out by the standard procedures described in Sambrook et al., Molecular Cloning - A Laboratory Manual, Second Ed., Cold Spring Harbor Laboratory Press, NY (1989), and in Volumes 1 and 2 of Ausubel et al. (1994) Current Protocols in Molecular Biology, Current Protocols, USA. Standard materials and methods for plant molecular biology work are described in Plant Molecular Biology Labfax (1993) by R.R.D. Croy, jointly published by BIOS Scientific Publications Ltd (UK) and Blackwell Scientific Publications (UK). Procedures for PGR technology can be found in "PCR protocols: a guide to methods and applications", Edited by M.A. Innis, D.H. Gelfand, J.J. Sninsky and T.J. White (Academic Press, Inc., 1990).
The terms "tolerance", "tolerant" or "less sensitive" are interchangeable used and mean the relative levels of inherent tolerance of the HPPD screened according to a visible indicator phenotype of the strain or plant transformed with a nucleic acid comprising the gene coding for the respective HPPD protein in the presence of different concentrations of the various HPPD inhibitors. Dose responses and relative shifts in dose responses associated with these indicator phenotypes (formation of brown colour, growth inhibition, bleaching, herbicidal effect etc) are conveniently expressed in terms, for example, of GR50 (concentration for 50% reduction of growth) or MIC (minimum inhibitory concentration) values where increases in values correspond to increases in inherent tolerance of the expressed HPPD, in the normal manner based upon plant damage, meristematic bleaching symptoms etc. at a range of different concentrations of herbicides. These data can be expressed in terms of, for example, GR50 values derived from dose/response curves having "dose" plotted on the x-axis and "percentage kill", "herbicidal effect", "numbers of emerging green plants" etc. plotted on the y-axis where increased GR50 values correspond to increased levels of inherent tolerance of the expressed HPPD. Herbicides can suitably be applied pre-emergence or post emergence.
Likewise, tolerance level of the nucleic acid or gene encoding an HPPD protein according to the invention, or the HPPD protein of the invention is screened via transgenesis, regeneration, breeding and spray testing of a test plant such as tobacco, or a crop plant such as soybean or cotton and according to these results, such plants are at least 2-4 times more tolerant to HPPD inhibitors like tembotrione, mesotrione, diketonitrile and/or bicyclopyrone, than plants that do not contain any exogenous gene encoding an HPPD protein, or than plants that contain a gene comprising an Arabidopsis thaliana HPPD-encoding DNA, under control of the same promoter as the HPPD DNA of the invention.
"Host organism" or "host" is understood as being any unicellular or multicellular heterologous organism into which the nucleic acid or chimeric gene according to the invention can be introduced for the purpose of producing HPPD according to the invention. These organisms are, in particular, bacteria, for example E. coli, yeasts, in particular of the genera Saccharomyces or Kluyveromyces, Pichia, fungi, in particular Aspergillus, a baculovirus or, preferably, plant cells and plants.
"Plant cell" is understood, according to the invention, as being any cell which is derived from or found in a plant and which is able to form or is part of undifferentiated tissues, such as calli, differentiated tissues such as embryos, parts of plants, plants or seeds. This includes protoplasts and pollen, cultivated plants cells or protoplasts grown in vitro, and plant cells that can regenerate into a complete plant.
"Plant" is understood, according to the invention, as being any differentiated multicellular organism which is capable of photosynthesis, in particular a
monocotyledonous or dicotyledonous organism, more especially cultivated plants which are or are not intended for animal or human nutrition, such as maize or corn, wheat, Brassica spp. plants such as Brassica napus or Brassica juncea, soya spp, rice, sugarcane, beetroot, tobacco, cotton, vegetable plants such as cucumber, leek, carrot, tomato, lettuce, peppers, melon, watermelon, etc. Transgenic plants, as used herein, refer to plants comprising a foreign or heterologous gene stably inserted in their genome.
In one embodiment the invention relates to the transformation of plants. Any promoter sequence of a gene which is expressed naturally in plants, or any hybrid or combination of promoter elements of genes expressed naturally in plants, including Agrobacterium or plant virus promoters, or any promoter which is suitable for controlling the transcription of a herbicide tolerance gene in plants, can be used as the promoter sequence in the plants of the invention (named "plant-expressible promoter" herein). Examples of such suitable plant-expressible promoters are described above. In one embodiment of this invention, such plant-expressible promoters are operably-linked to a coding sequence encoding an HPPD protein of the invention to form a chimeric HPPD gene of this invention.
According to the invention, it is also possible to use, in combination with the promoter regulatory sequence, other regulatory sequences which are located between the promoter and the coding sequence, such as intron sequences, or transcription activators (enhancers). Examples of such suitable regulatory sequences are described above.
Any corresponding sequence of bacterial or viral origin, such as the nos terminator from Agrobacterium tumefaciens, or of plant origin, such as a histone terminator as described in application EP 0 633 317 A1 , may be used as transcription termination (and polyadenylation) regulatory sequence.
In one particular embodiment of the invention, a nucleic acid sequence which encodes a transit peptide is employed 5' (upstream) of the nucleic acid sequence encoding the exogenous HPPD according to the invention, with this transit peptide sequence being arranged between the promoter region and the sequence encoding the exogenous HPPD so as to permit expression of a transit peptide-HPPD fusion protein, such as the protein of SEQ ID No. 20, SEQ ID No. 21 , or SEQ ID No. 22. The transit peptide makes it possible to direct the HPPD into the plastids, more especially the
chloroplasts, with the fusion protein being cleaved between the transit peptide and the HPPD protein of the invention when the latter enters the plastid. The transit peptide may be a single peptide, such as an EPSPS transit peptide (described in
US patent 5,188,642) or a transit peptide of the plant ribulose bisphosphate carboxylase/ oxygenase small subunit (RuBisCO ssu), where appropriate, including a few amino acids of the N-terminal part of the mature RuBisCO ssu (EP 189 707 A1 ), or else may be a fusion of several transit peptides such as a transit peptide which comprises a first plant transit peptide which is fused to a part of the N-terminal sequence of a mature protein having a plastid location, with this part in turn being fused to a second plant transit peptide as described in patent EP 508 909 A1 , and, more especially, the optimized transit peptide which comprises a transit peptide of the sunflower RuBisCO ssu fused to 22 amino acids of the N-terminal end of the maize RuBisCO ssu, in turn fused to the transit peptide of the maize RuBisCO ssu, as described, with its coding sequence, in patent EP 508 909 A1 .
The present invention also relates to the transit peptide-HPPD fusion protein and a nucleic acid or plant-expressible chimeric gene encoding such fusion protein, wherein the two elements of this fusion protein are as defined above.
The present invention also relates to a cloning, transformation and/or expression vector, which vector contains at least one chimeric gene as defined above. In addition to the above chimeric gene, this vector can contain an origin of replication. This vector can be a plasmid or plasmid portion, a cosmid, or a bacteriophage or a virus which has been transformed by introducing the chimeric gene according to the invention. Transformation vectors are well known to the skilled person and widely described in the literature. The transformation vector which can be used, in particular, for transforming plant cells or plants may be a virus, which can be employed for transforming plant cells or plants and which additionally contains its own replication and expression elements. According to the invention, the vector for transforming plant cells or plants is preferably a plasmid, such as a disarmed Agrobacterium Ti plasmid. The present invention also relates to the host organisms, in particular plant cells, seeds or plants, which comprise a chimeric gene which comprises a sequence encoding an HPPD protein of the invention, such as a protein comprising the amino acid sequence of SEQ ID Nos 17, 18, 19, 20, 21 , or 22 as defined above, and the use of the plants or seeds of the invention in a field to grow a crop and harvest a plant product, e.g., soya spp, rice, wheat, barley or corn grains or cotton bolls, where in one embodiment said use involves the application of an HPPD inhibitor herbicide to such plants to control weeds. In one embodiment of this invention, in such use the HPPD inhibitors are N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones or pyrazolinates, preferably tembotrione, mesotrione, topramezone or sulcotrione, bicyclopyrone, pyrasulfotole, pyrazolate, benzofenap and tefuryltrione, particularly tembotrione. Therefore, the present invention relates to a host organism, in particular a plant cell, seed, or plant, characterized in that it contains at least one HPPD chimeric gene as described above, or at least an HPPD nucleic acid sequence as previously described.
In a particular embodiment, the present invention relates to a plant cell, seed, or plant characterized in that it contains at least a nucleic acid sequence which encodes an HPPD protein of this invention which retain its properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which makes this plant more tolerant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of particularly to N-(1 ,2,5-oxadiazol-3-yl)benzamides,
N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, or pyrazolinates, preferably tembotrione, mesotrione, topramezone or sulcotrione, bicyclopyrone, pyrasulfotole, pyrazolate, benzofenap and tefuryltrione, particularly tembotrione compared to plants of the same species not comprising such HPPD protein of the present invention, and wherin such plants containing the HPPD protein of the invention have an agronomically acceptable tolerance to one or more HPPD inhibitor herbicide(s) particularly selected to the group consisting of N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)- or N-(thazol-3-yl)arylcarboxamides, triketones, or pyrazolinates, preferably to one or more HPPD inhibitor heribcide(s) selected from the group consisting of tembotrione, mesotrione, topramezone or sulcotrione, bicyclopyrone, pyrasulfotole, pyrazolate, benzofenap and tefuryltrione, particularly to tembotrione.
In another particular embodiment, the present invention relates to a plant cell, seed, or plant characterized in that it contains at least a nucleic acid sequence which encodes an HPPD of this invention which retain its properties of catalysing the conversion of para-hydroxyphenylpyruvate to homogentisate and which is less sensitive to one or more HPPD inhibitor herbicide(s) than the host plant endogenous HPPD, such as the HPPD from Arabidopsis thaliana, particularly the HPPD comprising the amino acid sequence of SEQ ID No. 28 (from the amino acid position 126 to the amino acid position 568).
In a particular embodiment, the present invention relates to a host plant cell, seed or host plant characterized in that it contains at least a nucleic acid sequence which encodes an HPPD of the invention as defined herein, wherein the HPPD of the invention, compared to the host plant endogenous HPPD, is less sensitive to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, isoxazoles, diketonitriles, triketones or pyrazolinates, more especially to one or more HPPD inhibitor herbicide(s) selected from the group consisting of isoxaflutole, tembotrione, mesotrione, sulcotrione, pyrasulfotole, bicyclopyrone, tefuryltrione, topramezone, 2-cyano-3-cyclopropyl-1 -(2-S02CH3-4-CF3phenyl)propane-1 ,3-dione and 2-cyano-3-cyclopropyl-1-(2-S02CH3-4-2,3 C phenyl)propane-1 ,3-dione, even more particularly to one or more HPPD inhibitor herbicide(s) selected from the group consisting of tembotrione, mesotrione, diketonitrile, bicyclopyrone, topramezone, pyrazolate, benzofenap, sulcotrione, tefuryltrione, and pyrasulfotole, most particularly particularly to one or more HPPD inhibitor herbicide(s) selected from the group consisting of tembotrione, mesotrione and bicyclopyrone. In another particular embodiment, the present invention relates to a plant cell, seed, or plant characterized in that it contains at least a nucleic acid sequence encoding an HPPD of the invention as previously described, and in addition a chimeric gene comprising a plant-expressible promoter as described above, operably-linked to a nucleic acid sequence encoding a PDH (prephenate dehydrogenase) enzyme (US 2005/0257283).
The present invention also relates to the plants which contain transformed cells, in particular the plants which are regenerated from the transformed cells, and progeny plants or seeds thereof, comprising the chimeric HPPD gene of the invention. The regeneration can be obtained by any appropriate method, with the method depending on the nature of the species, as described, for example, in the above references. The following patents and patent applications may be cited, in particular, with regard to the methods for transforming plant cells and regenerating plants: US 4,459,355,
US 4,536,475, US 5,464,763, US 5,177,010, US 5,187,073, EP 267,159 A1 ,
EP 604 662 A1 , EP 672 752 A1 , US 4,945,050, US 5,036,006, US 5,100,792,
US 5,371 ,014, US 5,478,744, US 5,179,022, US 5,565,346, US 5,484,956,
US 5,508,468, US 5,538,877, US 5,554,798, US 5,489,520, US 5,510,318,
US 5,204,253, US 5,405,765, EP 442 174 A1 , EP 486 233 A1 , EP 486 234 A1 , EP 539 563 A1 , EP 674 725 A1 , WO 91/02071 and WO 95/06128.
The present invention also relates to the transgenic plants or part thereof, which are derived by cultivating and/or crossing the above transgenic plants, and to the seeds of the transgenic plants, comprising the HPPD chimeric gene of the invention.
The present invention also relates to the end products such as the meal or oil which are obtained from the plants, part thereof, or seeds of the invention. The transformed plants which can be obtained in accordance with the invention can be of the monocotyledonous type, such as wheat, barley, sugarcane, rice, onion, and corn or maize, or of the dicotyledonous type, such as tobacco, soya spp, alfalfa Brassica spp. plants such as oilseed rape, cotton, sugarbeet clover, vegetables, etc.
The invention relates to a method for transforming host organisms, in particular plant cells or plants, by integrating in such organisms at least one nucleic acid sequence or one chimeric gene as previously defined, wherein it is possible to obtain the transformation by any appropriate known means, which means are amply described in the specialist literature and, in particular, the references cited in the present application, e.g., by using the vector according to the invention.
One transformation method in accordance with this invention comprises bombarding cells, protoplasts or tissues with solid or liquid particles to which DNA is attached, or containing DNA. Another transformation method comprises using, as mean for transfer into the plant, a chimeric gene which is inserted into an Agrobacterium tumefaciens Ti plasmid or an Agrobacterium rhizogenes Ri plasmid. Other methods may be used, such as microinjection or electroporation or otherwise direct gene transfer using PEG. The skilled person can select any appropriate method for transforming the host organism of choice, in particular the plant cell or the plant. As examples, the technology for soybean transformation has been extensively described in the examples 1 to 3 disclosed in EP 1 186666 A1 , incorporated herein by reference. For rice, Agrobacterium-mediated transformation (Hiei et al. (1994) Plant J 6:271 -282, and Hiei et al., (1997), Plant Mol Biol. 35:205-21 , incorporated herein by reference), electroporation (US 5,641 ,664 and US 5,679,558, incorporated herein by reference), or bombardment (Christou et al. (1991 ), Biotechnology 9:957 incorporated herein by reference) could be performed. A suitable technology for transformation of
monocotyledonous plants, and particularly rice, is described in WO 92/09696, incorporated herein by reference. For cotton, Agrobacterium-mediated transformation (Gould J.H. and Magallanes-Cedeno M. (1998), Plant Molecular Biology reporter, 16:1 -10 and Zapata C. (1999), Theoretical Applied Genetics, 98(2): 1432-2242 incorporated herein by reference), polybrene and/or treatment-mediated
transformation (Sawahel W.A. (2001 ), Plant Molecular Biology reporter, 19:377a-377f, incorporated herein by reference) have been described. In a particular embodiment of the invention, the HPPD of the invention is targeted into the chloroplast. This may be done by fusing a nucleic acid sequence which encodes a transit peptide to the nucleic acid sequence encoding the HPPD protein of the invention to obtain a nucleic acid encoding a fusion protein as described above.
Alternatively, the HPPD of the invention may be expressed directly in the plastids, such as the chloroplasts, using transformation of the plastid, such as the chloroplast genome. A suitable method comprises the bombardment of plant cells or tissue by solid particles coated with the DNA or liquid particles comprising the DNA, and integration of the introduced gene encoding the protein of the invention by
homologous recombination. Suitable vectors and selection systems are known to the person skilled in the art. An example of means and methods which can be used for such integration into the chloroplast genome of tobacco plants is given in
WO 2006/108830, the content of which is hereby incorporated by reference
The present invention also relates to a method for obtaining a plant to an HPPD inhibitor, characterized in that the plant is transformed with a chimeric HPPD gene of the invention as previously described. Therefore, the present invention also relates to a method for obtaining a plant tolerant to an HPPD inhibitor, characterized in that the plant contains a chimeric HPPD gene of the invention which comprises a coding sequence as well as a heterologous regulatory element in the 5' and optionally in the 3' positions, which are able to function in a host organism, characterized in that the coding sequence comprises at least a nucleic acid sequence defining a gene encoding an HPPD of the invention as previously described.
In one embodiment of this invention, the HPPD inhibitor in the above method is selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketone or pyrazolinate herbicide, preferably selected from the group consisting of tembotrione, mesotrione, bicyclopyrone, tefuryltrione pyrasulfotole, pyrazolate, diketonitrile, benzofenap, or sulcotrione, particularly it is tembotrione.
According to this invention, a method for obtaining a plant tolerant to an HPPD inhibitor as described above is also provided, characterized in that a plant is obtained comprising a first transgene which is a chimeric HPPD gene of the invention, and a second transgene, which is a chimeric gene comprising a plant-expressible promoter operably-linked to a nucleic acid encoding a PDH (prephenate dehydrogenase) enzyme. A plant comprising such two transgenes can be obtained by transforming a plant with one transgene, and then re-transforming this transgenic plant with the second transgene, or by transforming a plant with the two transgenes simultaneously (in the same or in 2 different transforming DNAs or vectors), or by crossing a plant comprising the first transgene with a plant comprising the second transgene, as is well known in the art.
The invention also relates to a method for selectively removing weeds or preventing the germination of weeds in a field to be planted with plants or to be sown with seeds, or in a plant crop, by application of an HPPD inhibitor to such field or plant crop, in particular an HPPD inhibitor heribicide as previously defined, which method is characterized in that this HPPD inhibitor herbicide is applied to plants which have been transformed in accordance with the invention, either before sowing the crop (hereinafter named pre-planting application), before emergence of the crop
(hereinafter named pre-emergence application), or after emergence of the crop (hereinafter named post-emergence application).
The invention also relates to a method for controlling in an area or a field which contains transformed seeds as previously described in the present invention, which method comprises applying, to the said area of the field, a dose of an HPPD inhibitor herbicide which is toxic for the said weeds, without significantly affecting the seeds or plants which contain the HPPD nucleic acid or the chimeric HPPD gene of the invention as previously described in the present invention. The present invention also relates to a method for cultivating the plants which have been transformed with a chimeric gene according to the invention, which method comprises planting seeds comprising a chimeric gene of the invention, in an area of a field which is appropriate for cultivating the said plants, and in applying, if weeds are present, a dose, which is toxic for the weeds, of a herbicide whose target is the above- defined HPPD to the said area of the said field, without significantly affecting the said transformed seeds or the said transformed plants, and in then harvesting the cultivated plants or plant parts when they reach the desired stage of maturity and, where appropriate, in separating the seeds from the harvested plants.
In the above methods, the herbicide whose target is the HPPD enzyme can be applied in accordance with the invention, either before sowing the crop, before the crop emerges or after the crop emerges. The present invention also relates to a process for obtaining oil, particularly soya spp, corn or cotton oil, or meal, comprising growing a crop, particularly a soya spp crop, expressing an HPPD protein of the invention optionally treating such crop with an HPPD inhibitor herbicide, harvesting the grains and milling the grains to make meal and extract the oil. Also the seeds or grains, either whole, broken or crushed, comprising the chimeric gene of the invention are part of this invention.
Therefore, the present invention relates to a method for obtaining oil or meal comprising growing a transformed plant as described above, optionally treating such plant with an HPPD inhibitor herbicide, harvesting the grains and milling the grains to make meal and extract the oil.
Further provided in this invention, are the above methods involving one or more HPPD inhibitor herbicide(s) selected from the group consisting of isoxaflutole, tembotrione, mesotrione, pyrasulfotole, sulcotrione, bicyclopyrone, tefuryltrione, topramezone, 2-cyano-3-cyclopropyl-1 -(2-methylsulphonyl-4-trifluoromethylphenyl)- propane-1 ,3-dione and to 2-cyano-1 -[4-(methylsulphonyl)-2-trifluoromethylphenyl]-3- (1 -methylcyclopropyl)propane-1 ,3-dione. Also provided herein are the above methods of the invention involving one or more HPPD inhibitor herbicide(s) selected from the group consisting of triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembotrione.
Within the meaning of the present invention, "herbicide" is understood as being a herbicidally active substance on its own or such a substance which is combined with an additive which alters its efficacy, such as, for example, an agent which increases its activity (a synergistic agent) or which limits its activity (a safener). It is of course to be understood that, for their application in practice, the above herbicides are combined, in a manner which is known per se, with the formulation adjuvants which are customarily employed in agricultural chemistry.
HPPD inhibitor herbicides like those of the class of N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides,
triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione, have an outstanding herbicidal activity against a broad spectrum of economically important monocotyledonous and dicotyledonous annual harmful plants. The active substances also act efficiently on perennial harmful plants which produce shoots from rhizomes, wood stocks or other perennial organs and which are difficult to control.
The present invention therefore also relates to a method of controlling undesired plants or for regulating the growth of plants in crops of plants comprising an HPPD according to the invention, where one or more HPPD inhibitor herbicides of the class of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione are applied to the plants (for example harmful plants such as monocotyledonous or dicotyledonous weeds or undesired crop plants), to the seeds (for example grains, seeds or vegetative propagules such as tubers or shoot parts with buds) or to the area on which the plants grow (for example the area under cultivation). In this context, one or m ore HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and
topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it it tembotrione can be applied for example pre-planting (if appropriate also by incorporation into the soil), pre-emergence or post-emergence. Examples of individual representatives of the monocotyledonous and dicotyledonous weeds which can be controlled with an HPPD inhibitor herbicide of the class of N-(1 ,2,5-oxadiazol- 3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione are hereby mentioned, without this mentioning being intended as a limitation to certain species only:
Monocotyledonous harmful plants of the genera: Aegilops, Agropyron, Agrostis, Alopecurus, Apera, Avena, Brachiaria, Bromus, Cenchrus, Commelina, Cynodon,
Cyperus, Dactyloctenium, Digitaria, Echinochloa, Eleocharis, Eleusine,
Eragrostis, Eriochloa, Festuca, Fimbristylis, Heteranthera, Imperata, Ischaemum, Leptochloa, Lolium, Monochoria, Panicum, Paspalum, Phalaris, Phleum, Poa, Rottboellia, Sagittaria, Scirpus, Setaria, Sorghum.
Dicotyledonous weeds of the genera: Abutilon, Amaranthus, Ambrosia, Anoda, Anthemis, Aphanes, Artemisia, Atriplex, Bellis, Bidens, Capsella, Carduus, Cassia, Centaurea, Chenopodium, Cirsium, Convolvulus, Datura, Desmodium, Emex, Erysimum, Euphorbia, Galeopsis, Galinsoga, Galium, Hibiscus, Ipomoea, Kochia, Lamium, Lepidium, Lindernia, Matricaria, Mentha, Mercurialis, Mullugo, Myosotis, Papaver, Pharbitis, Plantago, Polygonum, Portulaca, Ranunculus, Raphanus, Rorippa, Rotala, Rumex, Salsola, Senecio, Sesbania, Sida, Sinapis, Solanum, Sonchus, Sphenoclea, Stellaria, Taraxacum, Thlaspi, Trifolium, Urtica,
Veronica, Viola, Xanthium.
In transgenic crops according to the invention, comprising an HPPD protein, DNA or chimeric gene according invention and which may also show one more further herbicide resistances against herbicides that differ from HPPD inhibitor herbicides, the use of one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembotrione in economically important transgenic crops of useful plants and ornamentals, for example of cereals such as wheat, barley, rye, oats, sorghum and millet, rice and maize or else crops of sugar beet, cotton, soya spp, oil seed rape, potato, tomato, peas and other vegetables is preferred.
As it relates to plant properties other than the tolerance to HPPD inhibitor herbicides as described in the present invention, conventional ways of generating novel plants which, in comparison with existing plants, have modified properties are, for example, traditional breeding methods and the generation of mutants. Alternatively, novel plants with modified properties can be generated with the aid of recombinant methods (see, for example, EP-A-0221044 A1 , EP-A-0131624 A1 ). For example, the following have been described in several cases:
recombinant modifications of crop plants for the purposes of modifying the starch synthesized in the plants (for example WO 92/1 1376, WO 92/14827,
WO 91/19806), transgenic crop plants which are resistant to certain herbicides of the
glufosinate type (cf., for example, EP-A-0242236, EP-A-242246) or of the glyphosate type (WO 92/00377) or of the sulfonylurea type (EP-A-0257993, US-A-501 3659),
transgenic crop plants, for example corn, cotton or soya spp, which are capable of producing Bacillus thuringiensis toxins (Bt toxins), or hybrids or mutants thereof, which make the plants resistant to certain pests (EP-A-0193259), transgenic crop plants with a modified fatty acid composition (WO 91 /13972), genetically modified crop plants with novel constituents or secondary
metabolites, for example novel phytoalexins, which bring about an increased disease resistance (EP-A-309862, EP-A-0464461 ),
genetically modified plants with reduced photorespiration which feature higher yields and higher stress tolerance (EP-A-0305398),
transgenic crop plants which produce pharmaceutically or diagnostically important proteins ("molecular pharming"),
transgenic crop plants which are distinguished by higher yields or better quality, transgenic crop plants which are distinguished by a combination of novel properties such as a combination of the abovementioned novel properties ("gene stacking").
A large number of molecular-biological techniques by means of which novel transgenic plants with modified properties can be generated are known in principle; see, for example, I. Potrykus and G. Spangenberg (eds.) Gene Transfer to Plants, Springer Lab Manual (1995), Springer Verlag Berlin, Heidelberg, or Christou, "Trends in Plant Science" 1 (1996), 423-431 ).
To carry out such recombinant manipulations, it is possible to introduce nucleic acid molecules into plasmids, which permit a mutagenesis or sequence modification by recombination of DNA sequences. For example, base substitutions can be carried out, part-sequences can be removed, or natural or synthetic sequences may be added with the aid of standard methods. To link the DNA fragments with one another, it is possible to add adapters or linkers to the fragments; see, for example, Sambrook et al., 1989, Molecular Cloning, A Laboratory Manual, 2. ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY; or Winnacker "Gene und Klone", VCH Weinheim 2. ed. (1996). The generation of plant cells with a reduced activity for a gene product can be achieved for example by the expression of at least one corresponding antisense RNA, a sense RNA for achieving a cosuppression effect, or a combination of both an antisense and sense RNA forming a double-stranded silencing RNA molecule (RNAi), or by the expression of at least one correspondingly constructed ribozyme, which specifically cleaves transcripts of the abovementioned gene product. To do this, it is possible firstly to use DNA molecules which comprise all of the coding sequence of a gene product, including any flanking sequences which may be present, or else DNA molecules which only comprise parts of the coding sequence, it being necessary for these parts to be long enough to bring about an antisense effect in the cells. It is also possible to use DNA sequences which have a high degree of homology with the coding sequences of a gene product, but which are not entirely identical.
When expressing nucleic acid molecules in plants, the obtained protein may be localized in any compartment of the plant cell. In order to achieve localization in a particular compartment, however, it is possible for example to link the coding region to DNA sequences which ensure the localization in a specific compartment. Such sequences are known to the skilled person (see, for example, Braun et al.,( 992), EMBO J. ,1 1 , 3219-3227; Wolter et al.(1988), Proc. Natl. Acad. Sci. USA 85, 846-850; Sonnewald et al. (1991 ), Plant J. ,1 ,95-106). However, the nucleic acid molecules can also be expressed in the organelles of the plant cells.
The transgenic plant cells can be regenerated by known techniques to give intact plants. In principle, the transgenic plants may be plants of any plant species, including monocotyledonous or dicotyledonous plants.
Thus, transgenic plants can be obtained which - in addition to the chimeric HPPD gene of the invention - have modified properties as the result of overexpression, suppression or inhibition of homologous (= natural) genes or gene sequences or expression of heterologous (= foreign) genes or gene sequences.
On the plants, plant cells or seeds of the invention, it is preferred to employ one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazoiinates, such as pyrasuifotole and topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembotrione in transgenic crops which are also resistant to growth regulators such as, for example, 2,4-D or dicamba, or against herbicides which inhibit essential plant enzymes, for example acetolactate synthases (ALS), EPSP synthases, or glutamine synthases (GS), or against herbicides from the group of the sulfonylureas, glyphosate, or glufosinate and analogous active substances.
The invention therefore also relates to the use of herbicides applied to this HPPD tolerant plants according to the invention for controlling harmful plants (i.e. weeds) which also extends to transgenic crop plants comprising a second or more herbicide resistance(s) beside the resistance against one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, isoxazoles such as isoxaflutole, pyrazoiinates, such as pyrasuifotole and topramezone, particularly selected from the group consisting of tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly it is tembotrione.
HPPD inhibitor herbicide of the class of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N- (tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazoiinates, such as pyrasuifotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione can be employed in the customary preparations in the form of wettable powders, emulsifiable concentrates, sprayable solutions, dusts or granules. HPPD inhibitor herbicide of the class of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N- (tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione can be formulated in various ways, depending on the prevailing biological and/or physico- chemical parameters. Examples of possible formulations are: wettable powders (WP), water-soluble powders (SP), water-soluble concentrates, emulsifiable concentrates (EC), emulsions (EW), such as oil-in-water and water-in-oil emulsions, sprayable solutions, suspension concentrates (SC), oil- or water-based dispersions, oil-miscible solutions, capsule suspensions (CS), dusts (DP), seed-dressing products, granules for application by broadcasting and on the soil, granules (GR) in the form of
microgranules, spray granules, coated granules and adsorption granules, water- dispersible granules (WG), water-soluble granules (SG), ULV formulations, microcapsules and waxes.
These individual types of formulation are known in principle and are described, for example, in: Winnacker-Kuchler, "Chemische Technologie" [Chemical technology], volume 7, C. Hanser Verlag Munich, 4th Ed. 1986; Wade van Valkenburg, "Pesticide Formulations", Marcel Dekker, N.Y., 1973; K. Martens, "Spray Drying" Handbook, 3rd Ed. 1979, G. Goodwin Ltd. London.
The formulation auxiliaries required, such as inert materials, surfactants, solvents and further additives, are also known and are described, for example, in: Watkins,
"Handbook of Insecticide Dust Diluents and Carriers", 2nd Ed., Darland Books, Caldwell N.J., H.v. Olphen, "Introduction to Clay Colloid Chemistry"; 2nd Ed., J. Wiley & Sons, N.Y.; C. Marsden, "Solvents Guide"; 2nd Ed., Interscience, N.Y. 1963;
McCutcheon's "Detergents and Emulsifiers Annual", MC Publ. Corp., Ridgewood N.J.; Sisley and Wood, "Encyclopedia of Surface Active Agents", Chem. Publ. Co. Inc., N.Y. 1964; Schonfeldt, "Grenzflachenaktive Athylenoxidaddukte" [Interface-active ethylene oxide adducts], Wiss. Veriagsgesell., Stuttgart 1976; Winnacker-Kuchler, "Chemische Technologie" [Chemical technology], volume 7, C. Hanser Verlag Munich, 4th Ed. 1986.
Based on these formulations, it is also possible to prepare combinations with other pesticidally active substances such as, for example, insecticides, acaricides, herbicides, fungicides, and with safeners, fertilizers and/or growth regulators, for example in the form of a ready mix or a tank mix.
Wettable powders are preparations which are uniformly dispersible in water and which, besides the active substance, also comprise ionic and/or nonionic surfactants (wetters, dispersers), for example polyoxyethylated alkylphenols, polyoxyethylated fatty alcohols, polyoxyethylated fatty amines, fatty alcohol polyglycol ether sulfates, alkanesulfonates, alkylbenzenesulfonates, sodium lignosulfonate, sodium
2,2'-dinaphthylmethane-6,6'-disulfonate, sodium dibutylnaphthalenesulfonate or else sodium oleoylmethyltaurinate, besides a diluent or inert substance. To prepare the wettable powders, the herbicidally active substances are ground finely, for example in customary apparatuses such as hammer mills, blower mills and air-jet mills, and mixed with the formulation auxiliaries, either simultaneously or subsequently.
Emulsifiable concentrates are prepared by dissolving the active substance in an organic solvent, for example butanol, cyclohexanone, dimethylformamide, xylene or else higher-boiling aromatics or hydrocarbons or mixtures of the organic solvents with addition of one or more ionic and/or nonionic surfactants (emulsifiers). Examples of emulsifiers which may be used are: calcium alkylarylsulfonates such as calcium dodecylbenzenesulfonate, or nonionic emulsifiers such as fatty acid polyglycol esters, alkylaryl polyglycol ethers, fatty alcohol polyglycol ethers, propylene oxide/ethylene oxide condensates, alkyl polyethers, sorbitan esters such as, for example, sorbitan fatty acid esters or polyoxyethylene sorbitan esters such as, for example,
polyoxyethylene sorbitan fatty acid esters. Dusts are obtained by grinding the active substance with finely divided solid materials such as, for example, talcum, natural clays such as kaolin, bentonite and pyrophyllite, or diatomaceous earth.
Suspension concentrates can be water- or oil-based. They can be prepared for example by wet-grinding by means of commercially available bead mills, if appropriate with addition of surfactants as already listed above for example in the case of the other formulation types.
Emulsions, for example oil-in-water emulsions (EW), can be prepared for example by means of stirrers, colloid mills and/or static mixers using aqueous organic solvents and, if appropriate, surfactants, as have already been mentioned for example above for the other formulation types.
Granules can be prepared either by spraying the active substance onto adsorptive, granulated inert material, or by applying active substance concentrates to the surface of carriers such as sand, kaolinites or granulated inert material with the aid of stickers, for example polyvinyl alcohol, sodium polyacrylate or else mineral oils. Suitable active substances can also be granulated in the manner which is customary for the production of fertilizer granules, if desired as a mixture with fertilizers.
Water-dispersible granules are generally prepared by customary methods such as spray drying, fluidized-bed granulation, disk granulation, mixing with high-speed stirrers, and extrusion without solid inert material.
To prepare disk granules, fluidized-bed granules, extruder granules and spray granules, see, for example, methods in "Spray-Drying Handbook" 3rd ed. 1979, G. Goodwin Ltd., London; J.E. Browning, "Agglomeration", Chemical and Engineering 1967, pages 147 et seq.; "Perry's Chemical Engineer's Handbook", 5th Ed.,
McGraw-Hill, New York 1973, p. 8-57. For further details of the formulation of crop protection products see, for example, G.C. Klingman, "Weed Control as a Science", John Wiley and Sons, Inc., New York, 1961 , pages 81 -96 and J.D. Freyer, S.A. Evans, "Weed Control Handbook", 5th Ed., Blackwell Scientific Publications, Oxford, 1968, pages 101 -103.
As a rule, the agrochemical preparations comprise from 0.1 to 99% by weight, in particular from 0.1 to 95% by weight, of compounds according to the invention.
In wettable powders, the active substance concentration is, for example,
approximately 10 to 90% by weight, the remainder to 100% by weight being composed of customary formulation constituents. In the case of emulsifiable concentrates, the active substance concentration can amount to approximately 1 to 90, preferably 5 to 80% by weight. Formulations in the form of dusts comprise from 1 to 30% by weight of active substance, preferably in most cases from 5 to 20% by weight of active substance, and sprayable solutions comprise approximately from 0.05 to 80, preferably from 2 to 50% by weight of active substance. In the case of water- dispersible granules, the active substance content depends partly on whether the active compound is in liquid or solid form, and on the granulation auxiliaries, fillers and the like which are being used. In the case of the water-dispersible granules, for example, the active substance content is between 1 and 95% by weight, preferably between 10 and 80% by weight.
In addition, the active substance formulations mentioned comprise, if appropriate, the auxiliaries which are conventional in each case, such as stickers, wetters, dispersants, emulsifiers, penetrations, preservatives, antifreeze agents, solvents, fillers, carriers, colorants, antifoams, evaporation inhibitors, and pH and viscosity regulators.
Based on these formulations, it is also possible to prepare combinations of one or more HPPD inhibitor herbicide(s) of the class of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione with other pesticidally active substances such as, for example, insecticides, acaricides, herbicides, fungicides, and with safeners, fertilizers and/or growth regulators, for example in the form of a ready mix or a tank mix to be applied to HPPD tolerant plants according to the invention.
Active substances which can be applied to HPPD tolerant plants according to the present invention in combination with one or more HPPD inhibitor herbicide(s) of the class of ) N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione in mixed formulations or in the tank mix are, for example, known active substances which are based on the inhibition of, for example, acetolactate synthase, acetyl-CoA carboxylase, cellulose synthase, enolpyruvylshikimate-3-phosphate synthase, glutamine synthetase,
p-hydroxyphenylpyruvate dioxygenase, phytoene desaturase, photosystem I, photosystem II, protoporphyrinogen oxidase, as are described in, for example, Weed Research 26 (1986) 441 -445 or "The Pesticide Manual", 14th edition, The British Crop Protection Council and the Royal Soc. of Chemistry, 2003 and the literature cited therein. Known herbicides or plant growth regulators which can be combined with the compounds according to the invention are, for example, the following active substances (the compounds are either designated by the common name according to the International Organization for Standardization (ISO) or by a chemical name, if appropriate together with the code number) and always comprise all use forms such as acids, salts, esters and isomers such as stereoisomers and optical isomers. In this context, one and in some cases also several use forms are mentioned by way of example: acetochlor, acibenzolar, acibenzolar-S-methyl, acifluorfen, acifluorfen-sodium, aclonifen, alachlor, allidochlor, alloxydim, alloxydim-sodium, ametryne, arnica rbazone, amidochlor, amidosulfuron, aminocyclopyrachlor, aminopyralid, amitrole, ammonium sulfamate, ancymidol, anilofos, asulam, atrazine, azafenidin, azimsulfuron, aziprotryne, BAH-043, BAS-140H, BAS-693H, BAS-714H, BAS-762H, BAS-776H, BAS-800H, beflubutamid, benazolin, benazolin-ethyl, bencarbazone, benfluralin, benfuresate, bensulide, bensulfuron-methyl, bentazone, benzfendizone,
benzobicyclon, benzofenap, benzofluor, benzoylprop, bifenox, bilanafos, bilanafos- sodium, bispyribac, bispyribac-sodium, bromacil, bromobutide, bromofenoxim, bromoxynil, bromuron, buminafos, busoxinone, butachlor, butafenacil, butamifos, butenachlor, butralin, butroxydim, butylate, cafenstrole, carbetamide, carfentrazone, carfentrazone-ethyl, chlomethoxyfen, chloramben, chlorazifop, chlorazifop-butyl, chlorbromuron, chlorbufam, chlorfenac, chlorfenac-sodium, chlorfenprop,
chlorflurenol, chlorflurenol-methyl, chloridazon, chlorimuron, chlorimuron-ethyl, chlormequat-chloride, chiornitrofen, chlorophthalim, chlorthal-dimethyl, chlorotoluron, chlorsulfuron, cinidon, cinidon-ethyl, cinmethyiin, cinosulfuron, ciethodim, clodinafop clodinafop-propargyl, clofencet, clomazone, clomeprop, cloprop, clopyralid, cloransulam, cloransulam-methyl, cumyluron, cyanamide, cyanazine, cyclanilide, cycloate, cyclosulfamuron, cycloxydim, cycluron, cyhalofop, cyhalofop-butyl, cyperquat, cyprazine, cyprazole, 2,4-D, 2,4-DB, daimuron/dymron, dalapon, daminozide, dazomet, n-decanol, desmedipham, desmetryn, detosyl-pyrazolate (DTP), di-allate, dicamba, dichlobenil, dichlorprop, dichlorprop-P, diclofop, diclofop- methyl, diclofop-P-methyl, diclosulam, diethatyl, diethatyl-ethyl, difenoxuron, difenzoquat, diflufenican, diflufenzopyr, diflufenzopyr-sodium, dimefuron, dikegulac- sodium, dimefuron, dimepiperate, dimethachlor, dimethametryn, dimethenamid, dimethenamid-P, dimethipin, dimetrasulfuron, dinitramine, dinoseb, dinoterb, diphenamid, dipropetryn, diquat, diquat-dibromide, dithiopyr, diuron, DNOC, eglinazine-ethyl, endothal, EPTC, esprocarb, ethalfluralin, ethametsulfuron-methyl, ethephon, ethidimuron, ethiozin, ethofumesate, ethoxyfen, ethoxyfen-ethyl, ethoxysulfuron, etobenzanid, F-5331 , i.e. N-[2-chloro-4-fluoro-5-[4-(3-fluoro-propyl)- 4,5-dihydro-5-oxo-1 H-tetrazol-1 -yl]-phenyl]ethanesulfonamide, fenoprop, fenoxaprop, fenoxaprop-P, fenoxaprop-ethyl, fenoxaprop-P-ethyl, fentrazamide, fenuron, flamprop, flamprop-M-isopropyl, flamprop- M-methyl, flazasulfuron, florasulam, fluazifop, fluazifop-P, fluazifop-butyl, fluazifop-P-butyl, fluazolate, flucarbazone, flucarbazone- sodium, flucetosulfuron, fluchloralin, flufenacet (thiafluamide), flufenpyr, flufenpyr- ethyl, flumetralin, flumetsulam, flumiclorac, flumiclorac-pentyl, flumioxazin, flumipropyn, fluometuron, fluorodifen, fluoroglycofen, fluoroglycofen-ethyl, flupoxam, flupropacil, flupropanate, flupyrsulfuron, flupyrsulfuron-methyl-sodium, flurenol, flurenol-butyl, f!uridone, flurochloridone, fluroxypyr, f!uroxypyr-meptyl, flurprimidol, flurtamone, fluthiacet, fluthiacet-methyl, fluthiamide, fomesafen, foramsulfuron, forchlorfenuron, fosamine, furyloxyfen, gibberellic acid, glufosinate, L-glufosinate, L- glufosinate-ammonium, glufosinate-ammonium, glyphosate, glyphosate- isopropylammonium, H-9201 , haiosafen, halosuifuron, halosulfuron-methyl, haloxyfop, haloxyfop-P, haloxyfop-ethoxyethyl, haloxyfop-P-ethoxyethyl, haloxyfop-methyl, haloxyfop-P-methyl, hexazinone, HNPC-9908, HOK-201 , HW-02, imazamethabenz, imazamethabenz-methyl, imazamox, imazapic, imazapyr, imazaquin, imazethapyr, imazosulfuron, inabenfide, indanofan, indoleacetic acid (IAA), 4-indol-3-ylbutyric acid (IBA), iodosulfuron, iodosulfuron-methyl-sodium, ioxynil, isocarbamid, isopropalin, isoproturon, isouron, isoxaben, isoxachlortole, isoxaflutole, isoxapyrifop, KUH-043, KUH-071 , karbutilate, ketospiradox, lactofen, lenacil, linuron, maleic hydrazide, MCPA, MCPB, MCPB-methyl, -ethyl and -sodium, mecoprop, mecoprop-sodium, mecoprop-butotyi, mecoprop-P-butotyl, mecoprop-P-dimethylammonium, mecoprop-P- 2-ethylhexyl, mecoprop-P-potassium, mefenacet, mefluidide, mepiquat-chloride, mesosulfuron, mesosulfuron-methyl, methabenzthiazuron, metam, metamifop, metamitron, metazachlor, methazole, methoxyphenone, methyldymron,
1 -methylcyclopropene, methyl isothiocyanate, metobenzuron, metobenzuron, metobromuron, metolachlor, S-metolachlor, metosulam, metoxuron, metribuzin, metsulfuron, metsulfuron-methyl, molinate, monalide, monocarbamide,
monocarbamide dihydrogen sulfate, monolinuron, monosulfuron, monuron, MT 128, MT-5950, i.e. N-[3-chloro-4-(1 -methylethyl)-phenyl]-2-methylpentanamide, NGGC- 01 1 , naproanilide, napropamide, naptalam, NC-310, i.e. 4-(2,4-dichlorobenzoyl)- 1 -methyl-5-benzyloxypyrazole, neburon, nicosulfuron, nipyraclofen, nitralin, nitrofen, nitrophenolat-sodium (isomer mixture), nitrofluorfen, nonanoic acid, norflurazon, orbencarb, orthosulfamuron, oryzalin, oxadiargyl, oxadiazon, oxasulfuron,
oxaziclomefone, oxyfluorfen, paclobutrazole, paraquat, paraquat dichloride, pelargonic acid (nonanoic acid), pendimethalin, pendralin, penoxsulam, pentanochlor, pentoxazone, perfluidone, pethoxamid, phenisopham, phenmedipham,
phenmedipham-ethyl, picloram, picolinafen, pinoxaden, piperophos, pirifenop, pirifenop-butyl, pretilachlor, primisulfuron, primisulfuron-methyl, probenazole, profluazol, procyazine, prodiamine, prifluraline, profoxydim, prohexadione, prohexadione-caicium, prohydrojasmone, prometon, prometryn, propachlor, propanil, propaquizafop, propazine, propham, propisochlor, propoxycarbazone,
propoxycarbazone-sodium, propyzamide, prosulfalin, prosulfocarb, prosulfuron, prynachlor, pyraclonil, pyraflufen, pyraflufen-ethyl, pyrazolynate (pyrazolate), pyrazosulfuron-ethyl, pyrazoxyfen, pyribambenz, pyribambenz-isopropyl,
pyribenzoxim, pyributicarb, pyridafol, pyridate, pyriftalid, pyriminobac, pyriminobac- methyl, pyrimisulfan, pyrithiobac, pyrithiobac-sodium, pyroxasulfone, pyroxsulam, quinclorac, quinmerac, quinoclamine, quizalofop, quizalofop-ethyl, quizalofop-P, quizalofop-P-ethyl, quizalofop-P-tefuryl, rimsulfuron, saflufenacil, secbumeton, sethoxydim, siduron, simazine, simetryn, SN-106279, sulf-allate (CDEC),
sulfentrazone, sulfometuron, sulfometuron-methyl, sulfosate (glyphosate-trimesium), sulfosulfuron, SYN-523, SYP-249, SYP-298, SYP-300, tebutam, tebuthiuron, tecnazene, tepraloxydim, terbacil, terbucarb, terbuchlor, terbumeton, terbuthylazine, terbutryne, TH-547, thenylchlor, thiafluamide, thiazafluron, thiazopyr, thidiazimin, thidiazuron, thiencarbazone, thiencarbazone-methyl, thifensulfuron, thifensulfuron- methyl, thiobencarb, tiocarbazil, tralkoxydim, tri-allate, triasulfuron, triaziflam, triazofenamide, tribenuron, tribenuron-methyl, trichloroacetic acid (TCA), triclopyr, tridiphane, trietazine, trifioxysulfuron, trifloxysulfuron-sodium, trifiuralin, triflusuifuron, triflusulfuron-methyl, trimeturon, trinexapac, trinexapac-ethyl, tritosulfuron, tsitodef, uniconazole, uniconazole-P, vernoiate, ZJ-0166, ZJ-0270, ZJ-0543, ZJ-0862 and the following compounds
Figure imgf000060_0001
Figure imgf000061_0001
The application rate required of the HPPD inhibitor herbicide of the class of ) N-(1 ,2,5- oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamides, triketones, such as tembotrione, sulcotrione and mesotrione, or of the class of pyrazolinates, such as pyrasulfotole and topramezone, particularly selected from tembotrione, sulcotrione, topramezone, bicyclopyrone, tefuryltrione and mesotrione, more particularly tembotrione to be applied to areas where HPPD tolerant plants according to the present invention are growing varies as a function of the external conditions such as temperature, humidity, the nature of the herbicide used and the like. It can vary within wide limits, for example between 0.001 and 1 .0 kg/ha and more of active substance, but it is preferably between 0.005 and 750 g/ha.
In case of combined applications of one or more HPPD inhibitor herbicide(s) with herbicides that differ from HPPD inhibitor herbicides to the HPPD tolerant plants according to the present invention, these mixtures may cause crop injury, based on the presence of the non HPPD inhibitor herbicide(s). In order to reduce/eliminate such crop injuries, appropriate safeners may be added. These safeners, which are employed in antidotically active amounts, reduce the phytotoxic side effects of herbicides/pesticides used, for example in economically important crops, such as cereals (wheat, barley, rye, corn, rice, millet), alfalfa, sugar beet, sugarcane, oilseed rape, cotton and soya spp., preferably corn, cotton, sugarbeet, or soya spp. The safeners are preferably selected from the group consisting of: compounds of the formula S-I)
Figure imgf000062_0001
where the symbols and indices have the following meanings:
ΠΑ is a natural number from 0 to 5, preferably from 0 to 3;
RA1 is halogen, (Ci-C-4)-alkyl, (Ci-C-4)-alkoxy, nitro or (d-C -haloalkyl;
WA is an unsubstituted or substituted divalent heterocyclic radical from the group consisting of partially unsaturated or aromatic five-membered heterocycles having 1 to 3 hetero ring atoms of the type N or O, where at least one nitrogen atom and at most one oxygen atom is present in the ring, preferably a radical from the group consisting of (WA 1) to (WA 4),
Figure imgf000062_0002
(WA1) (WA 2) (WA 3) (WA4) mA is 0 or 1 ;
RA2 is ORA3, SRA3 or N RA 3RA 4 or a saturated
or unsaturated 3- to 7-membered heterocycle having at least one nitrogen atom and up to 3 heteroatoms, preferably from the group consisting of O and S, which is attached via the nitrogen atom to the carbonyi group in (S-I) and which is unsubstituted or substituted by radicals from the group consisting of (C1-C4)- alkyl, (Ci-C4)-alkoxy and optionally substituted phenyl, preferably a radical of the formula ORA3, N H Ra 4 or N(CH3)2, in particular of the formula ORA3;
RA3 is hydrogen or an unsubstituted or substituted aliphatic hydrocarbon radical having preferably a total of 1 to 18 carbon atoms;
RA4 is hydrogen, (Ci-Ce)-alkyl, (Ci-Ce)-alkoxy or substituted or unsubstituted phenyl; RA5 is H , (d-Ce)-alkyl, (Ci-C8)-haloalkyl), (Ci-C4)-alkoxy-(Ci-C8)-alkyl, cyano or
COORA9 where RA 9 is hydrogen, (Ci-Ce)-alkyl, (Ci-C8)-haloalkyl, (Ci-C4)-alkoxy- (Ci-C4)-alkyl, (Ci-C6)-hydroxyalkyl, (C3-Ci2)-cycloalkyl or t -(Ci-C4)-alkylsilyl; RA6, RA7, RA8 are identical or different and are hydrogen, (Ci-Ce)-alkyl,
(Ci-C8)-haloalkyl, (C.3-Ci2)-cycloalkyl or substituted or unsubstituted phenyl; preferably:
a) compounds of the type of the dichlorophenylpyrazoline-3-carboxylic acid, preferably compounds such as ethyl 1 -(2,4-dichlorophenyl)-5-(ethoxycarbonyl)- 5-methyl-2-pyrazoline-3-carboxylate (S1 -1 ) ("mefenpyr-diethyl", see Pestic. Man.), and related compounds, as described in WO 91/07874;
b) derivatives of dichlorophenylpyrazolecarboxylic acid, preferably compounds such as ethyl 1 -(2,4-dichlorophenyl)-5-methylpyrazole-3-carboxylate (S1 -2), ethyl 1 -(2,4-dichlorophenyl)-5-isopropylpyrazole-3-carboxylate (S1 -3), ethyl
1 -(2,4-dichlorophenyl)-5-(1 ,1 -dimethylethyl)pyrazole-3-carboxylate (S1 -4), ethyl 1 -(2,4-dichlorophenyl)-5-phenylpyrazole-3-carboxylate (S1 -5) and related compounds, as described in EP-A-333 131 and EP-A-269 806;
c) compounds of the type of the triazolecarboxylic acids, preferably compounds such as fenchlorazole(-ethyl ester), i.e. ethyl 1 -(2,4-dichlorophenyl)-5-trichloro- methyl-(1 H)-1 ,2,4-triazole-3-carboxylate (S1 -6), and related compounds, as described in EP-A-174 562 and EP-A-346 620;
d) compounds of the type of the 5-benzyl- or 5-phenyl-2-isoxazoline-3-carboxylic acid or the 5,5-diphenyl-2-isoxazoline-3-carboxylic acid, preferably compounds such as ethyl 5-(2,4-dichlorobenzyl)-2-isoxazoline-3-carboxylate (S1 -7) or ethyl
5-phenyl-2-isoxazoline-3-carboxylate (S1 -8) and related compounds, as described in WO 91 /08202, or ethyl 5,5-diphenyl-2-isoxazolinecarboxylate (S1 -9) ("isoxadifen- ethyl") or n-propyl 5,5-diphenyl-2-isoxazolinecarboxylate (S1 -10) or ethyl
5-(4-fluorophenyl)-5-phenyl-2-isoxazoline-3-carboxylate (S1 -1 1 ), as described in the patent application WO-A-95/07897.
B) Quinoline derivatives of the formula (S-ll)
Figure imgf000064_0001
where the symbols and indices have the following meanings:
RB1 is halogen, (Ci-C )-alkyl, (Ci-C-4>-alkoxy, nitro or (Ci-C-4)-haloalkyl;
ne is a natural number from 0 to 5, preferably from 0 to 3;
RB2 ORB3, SRB3 or NRB 3FV or a saturated
or unsaturated 3- to 7-membered heterocycie having at least one nitrogen atom and up to 3 heteroatoms, preferably from the group consisting of O and S, which is attached via the nitrogen atom to the carbonyl group in (S-ll) and is unsubstituted or substituted by radicals from the group consisting of (CrC4)-alkyl, (Ci-C-4)-alkoxy or optionally substituted phenyl, preferably a radical of the formula ORB3, N H RB4 or
N(CH.3)2, in particular of the formula ORB3;
RB3 is hydrogen or an unsubstituted or substituted aliphatic hydrocarbon radical having preferably a total of 1 to 18 carbon atoms;
RB4 is hydrogen, (Ci-Ce)-alkyl, (Ci-Ce)-alkoxy or substituted or unsubstituted phenyl; TB is a (Ci- or C2)-alkanediyl chain which is unsubstituted or substituted by one or two (CrC4)-alkyl radicals or by [(Ci-C3)-alkoxy]carbonyl; preferably:
a) compounds of the type of the 8-quinolinoxyacetic acid (S2), preferably
1 -methylhexyl (5-chloro-8-quinolinoxy)acetate (common name "cloquintocet-mexyl" (S2-1 ) (see Pestic. Man.),
1 ,3-dimethylbut-1 -yl (5-chloro-8-quinolinoxy)acetate (S2-2),
4-allyloxybutyl (5-chloro-8-quinolinoxy)acetate (S2-3),
1 -ally!oxyprop-2-yl (5-chloro-8-quinolinoxy)acetate- (S2-4),
ethyl (5-chloro-8-quinolinoxy)acetate (S2-5),
methyl (5-chloro-8-quinolinoxy)acetate (S2-6),
allyl (5-chloro-8-quinolinoxy)acetate (S2-7),
2-(2-propylideneiminoxy)-1 -ethyl (5-chloro-8-quinolinoxy)acetate (S2-8), 2-oxoprop-1 - yl (5-chloro-8-quinolinoxy)acetate (S2-9) and related compounds, as described in EP-A-86 750, EP-A-94 349 and EP-A-191 736 or EP-A-0 492 366, and also their hydrates and salts, as described in WO-A-2002/034048. b) Compounds of the type of the (5-chloro-8-quinolinoxy)malonic acid, preferably compounds such as diethyl (5-chloro-8-quinolinoxy)malonate, diallyl (5-chloro-8- quinolinoxy)malonate, methyl ethyl (5-chloro-8-quinolinoxy)malonate and related compounds, as described in EP-A-0 582 198.
Compounds of the form -lll)
Figure imgf000065_0001
where the symbols and indices have the following meanings:
Rc1 is (Ci-C4)-alkyl, (Ci-C4)-haloalkyl, (C2-C4)-alkenyl, (C2-C4)-haloalkenyl, (C3-C7)- cycloalkyl, preferably dichloromethyl;
Rc2, Rc3 are identical or different and are hydrogen, (CrC4)-alkyl, (C2-C4)-alkenyl,
(C2-C4)-alkynyl, (Ci-C4)-haloalkyl, (C2-C4)-haloalkenyl, (Ci-C4)-alkylcarbamoyl-(Ci-C4)- alkyl, (C2-C4)-alkenylcarbamoyl-(Ci-C4)-alkyl, (Ci-C )-alkoxy-(CrC )-alkyl, dioxolanyl- (CrC )-alkyl, thiazolyl, fury I, furylalkyl, thienyl, piperidyl, substituted or unsubstituted phenyl, or Rc2 and Rc3 together form a substituted or unsubstituted heterocyclic ring, preferably an oxazoiidine, thiazolidine, piperidine, morphoiine, hexahydropyrimidine or benzoxazine ring; preferably:
Active compounds of the type of the dichloroacetamides which are frequently used as pre-emergence safener (soil-acting safeners), such as, for example,
"dichlormid" (see Pestic.Man.) (= N,N-diallyl-2,2-dichloroacetamide),
"R-29148" (= 3-dichloroacetyl-2,2,5-trimethyl-1 ,3-oxazolidine from Stauffer),
"R-28725" (= 3-dichloroacetyl-2,2,-dimethyl-1 ,3-oxazolidine from Stauffer),
"benoxacor" (see Pestic. Man.) (= 4-dichloroacetyl-3,4-dihydro-3-methyl-2H-1 ,4- benzoxazine), "PPG-1292" (= N-allyl-N-[(1 ,3-dioxolan-2-yl)methyl]dichloroacetamide from PPG industries),
"DKA-24" (= N-allyl-N-[(allylaminocarbonyl)methyl]dichloroacetamide from Sagro-
Chem),
"AD-67" or "MON 4660" (= 3-dichloroacetyl-1 -oxa-3-aza-spiro[4,5]decane from
Nitrokemia or Monsanto),
"TI-35" (= 1 -dichloroacetylazepane from TRI-Chemical RT)
"diclonon" (dicyclonone) or "BAS145138" or "LAB145138" (= 3-dichloroacetyl-2,5,5- trimethyl-1 ,3-diazabicyclo[4.3.0]nonane from BASF) and
"furilazole" or "MON 13900" (see Pestic. Man.) (= (RS)-3-dichloroacetyl-5-(2-furyl)- 2,2-dimethyloxazolidine).
N-Acylsulfonamides of the formula (S-IV) and their salts
Figure imgf000066_0001
in which
Figure imgf000066_0002
RD1 is CO-N RD 5RD6 or N HCO-RD7;
RD2 is halogen, (d-G -haloalkyl, (Ci-Ci)-haloalkoxy, nitro, (Ci-C})-alkyl, (C1-C4)- alkoxy, (Ci-C4)-alkylsulfonyl, (Ci-C4)-alkoxycarbonyl or (Ci-C4)-alkylcarbonyl;
RD3 is hydrogen, (Ci-C4)-alkyl, (C2-C4)-alkenyl or (C2-C4)-alkynyl;
RD4 is halogen, nitro, (Ci-C4)-alkyl, (Ci-C4)-haloalkyl, (Ci-C4)-haloalkoxy, (C3-C6)- cycloalkyl, phenyl, (Ci-C4)-alkoxy, cyano, (Ci-C4)-alkylthio, (Ci-C4)-alkylsulfinyl, (Cr C4)-alkylsulfonyl, (Ci-C4)-alkoxycarbonyl or (Ci-C4)-alkylcarbonyl;
RD5 is hydrogen, (Ci-C6)-alkyl, (C3-C6)-cycloalkyl, (C2-C6)-alkenyl, (C2-C6)-alkynyl, (C5-C6)-cycloalkenyl, phenyl or 3- to 6-membered heterocyclyl containing VD heteroatoms from the group consisting of nitrogen, oxygen and sulfur, where the seven last-mentioned radicals are substituted by VD substituents from the group consisting of halogen, (Ci-C-6)-alkoxy, (Ci-Cej-haloalkoxy, (Ci-C-2)-alkylsulfinyl, (C1-C2)- alkylsulfonyl, (C3-C6)-cycloalkyl, (Ci-C4)-alkoxycarbonyl, (Ci-C4)-a!kylcarbonyl and phenyl and, in the case of cyclic radicals, also (Ci-C4)-alkyl and (Ci-C4)-haloalkyl;
RD6 is hydrogen, (Ci-C6)-alkyl, (C2-Ce)-alkenyl or (C2-C6)-alkynyl, where the three last-mentioned radicals are substituted by VD radicals from the group consisting of halogen, hydroxy, (Ci-C-4)-alkyl, (Ci-C-4)-alkoxy and (Ci-C4)-alkylthio, or
RD5 and RD6 together with the nitrogen atom carrying them form a pyrrolidinyl or piperidinyl radical;
RD7 is hydrogen, (Ci-C-4)-alkylamino, di-(Ci-C4)-alkylamino, (Ci-Ce)-alkyl, (C3-Ce)- cycloalkyl, where the 2 last-mentioned radicals are substituted by VD substituents from the group consisting of halogen, (Ci-C4)-alkoxy, halogen-(Ci-C6)-alkoxy and (Ci-C4)- alkylthio and, in the case of cyclic radicals, also (Ci-C-4)-alkyl and (Ci-C-4)-haloalkyl; nD is 0, 1 or 2;
mo is 1 or 2;
VD is 0, 1 , 2 or 3; from among these, preference is given to compounds of the type of the
N-acylsulfonamides, for example of the formula (S-V) below, which are known, for example, fro
Figure imgf000067_0001
in which
RD7 is (Ci-Ce)-alkyl, (C3-C6)-cycloalkyl, where the 2 last-mentioned radicals are substituted by VD substituents from the group consisting of halogen, (Ci-C4)-alkoxy, halogen-(Ci-C6)-alkoxy and (Ci-C4)-alkylthio and, in the case of cyclic radicals, also (CrC4)-alkyl and (CrC4)-haloalkyl;
RD4 is halogen, (Ci-C4)-alkyl, (CrC4)-alkoxy, CF3;
mD is 1 or 2; is 0, 1 , 2 or 3; and also
acylsuifamoylbenzamides, for example of the formula (S-VI) below, which are known, for example,
Figure imgf000068_0001
for example those in which
RD5 = cyclopropyl and (RD 4) = 2-OMe ("cyprosulfamide", S3-1 ),
RD5 = cyclopropyl and (RD4) = 5-CI-2-OMe (S3-2),
RD5 = ethyl and (RD4) = 2-OMe (S3-3),
RD5 = isopropyl and (RD4) = 5-CI-2-OMe (S3-4) and
RD5 = isopropyl and (RD4) = 2-OMe (S3-5); and also
compounds of the type of the N-acylsulfamoylphenylureas of the formula (S-VII), which are known, for example, from EP-A-365484
Figure imgf000068_0002
in which
RD8 and RD 9 independently of one another are hydrogen, (Ci-Ce)-alkyl, (Cs-Cs)- cycloalkyl, (C3-C6)-alkenyl, (C3-C6)-alkynyl,
RD4 is halogen, (Ci-C4)-alkyl, (Ci-C4)-alkoxy, CF3
mD is 1 or 2; from among these in particular
1 -[4-(N-2-methoxybenzoylsulfamoyl)phenyl]-3-methylurea,
1 -[4-(N-2-methoxybenzoylsulfamoyl)phenyl]-3,3-dimethylurea, 1 -[4-(N-4,5-dimethylbenzoylsulfamoyl)phenyl]-3-methylurea,
1 -[4-(N-naphthoylsulfamoyl)phenyl]-3,3-dimethylurea,
G) active compounds from the class of the hydroxyaromatics and aromatic- aliphatic carboxylic acid derivatives, for example
ethyl 3,4,5-triacetoxybenzoate, 3,5-dimethoxy-4-hydroxybenzoic acid, 3,5- dihydroxybenzoic acid, 4-hydroxysalicylic acid, 4-fluorosalicyclic acid, 1 ,2-dihydro-2- oxo-6-trifluoromethylpyridine-3-carboxamide, 2-hydroxycinnamic acid, 2,4- dichlorocinnamic acid, as described in WO 2004084631 , WO 2005015994,
WO 2006007981 , WO 2005016001 ;
H) active compounds from the class of the 1 ,2-dihydroquinoxalin-2-ones, for example
1 -methyl-3-(2-thienyl)-1 ,2-dihydroquinoxalin-2-one, 1 -methyl-3-(2-thienyl)-1 ,2- dihydroquinoxaline-2-thione, 1 -(2-aminoethyl)-3-(2-thienyl)-1 ,2-dihydroquinoxalin-2- one hydrochloride, 1 -(2-methylsulfonylaminoethyl)-3-(2-thienyl)-1 ,2-dihydro- quinoxalin-2-one, as described in WO 20051 12630,
I) active compounds which, in addition to a herbicidal action against harmful plants, also have safener action on crop plants such as rice, such as, for example,
"dimepiperate" or "MY-93" (see Pestic. Man.) (=S-1 -methyl-1 -phenylethyl piperidine-1 - thiocarboxylate), which is known as safener for rice against damage by the herbicide molinate,
"daimuron" or "SK 23" (see Pestic. Man.) (= 1 -(1 -methyl-1 -phenylethyl)-3-p-tolylurea), which is known as safener for rice against damage by the herbicide imazosulfuron, "cumyluron" = "JC-940" (= 3-(2-chlorophenylmethyl)-1 -(1 -methyl-1 -phenyl-ethyl)urea, see JP-A-60087254), which is known as safener for rice against damage by a number of herbicides,
"methoxyphenone" or " K 049" (= 3,3'-dimethyl-4-methoxybenzophenone), which is known as safener for rice against damage by a number of herbicides,
"CSB" (= 1 -bromo-4-(chloromethylsulfonyl)benzene) (CAS Reg. No. 54091 -06-4 from Kumiai), which is known as safener against damage by a number of herbicides in rice, K) compounds of the formula (S-IX),
as described in WO-A- 1998/38856
Figure imgf000070_0001
in which the symbols and indices have the following meanings:
RK1 , RK2 independently of one another are halogen, (CrC4)-alkyl, (Ci-C4)-alkoxy, (Ci-C4)-haloalkyl, (CrC4)-alkylamino, di-(Ci-C4)-alkylamino, nitro;
A is COORK3 or COORK4
RK3, RK4 independently of one another are hydrogen, (Ci-C-4)-alkyl, (C2-C-6)- alkenyl, (C2-C4)-alkynyl, cyanoaikyi, (Ci-C4)-haloalkyl, phenyl, nitrophenyl, benzyl, halobenzyl, pyridinylalkyl or alkylammonium,
1 is 0 or 1 ,
ηκ2, ηκ3 independently of one another are 0, 1 or 2 preferably: methyl (diphenylmethoxy)acetate (CAS Reg. No.: 41858-19-9),
L) compounds of the formula (S-X),
as described in -98/27049
Figure imgf000070_0002
in which the symbols and indices have the following meanings:
Figure imgf000070_0003
ni is, in the case that X=N , an integer from 0 to 4 and,
in the case that X=CH , an integer from 0 to 5, fV is halogen, (Ci-C4)-alkyl, (Ci-C4)-haloalkyl, (Ci-C4)-alkoxy, (Ci-C4)-haloalkoxy, nitro, (CrC4)-alkylthio, (Ci-C4)-alkylsulfonyl, (Ci-C4)-alkoxycarbonyl, optionally substituted phenyl, optionally substituted phenoxy,
RL2 is hydrogen or (Ci-C4)-alkyl,
RL3 is hydrogen, (Ci-C-8)-alkyl, (C2-C4)-alkenyl, (C2-C4)-alkynyl or aryl, where each of the carbon-containing radicals mentioned above is unsubstituted or substituted by one or more, preferably by up to three, identical or different radicals from the group consisting of halogen and alkoxy; or salts thereof, M) active compounds from the class of the 3-(5-tetrazolylcarbonyl)-2-quinolones, for example
1 ,2-dihydro-4-hydroxy-1 -ethyl-3-(5-tetrazolylcarbonyl)-2-quinolone (CAS Reg. No.: 219479-18-2), 1 ,2-dihydro-4-hydroxy-1 -methyl-3-(5-tetrazolylcarbonyl)-2-quinolone (CAS Reg. No.: 95855-00-8), as described in WO-A-1999000020,
N) compounds of the formula (S-XI) or (S-XII),
as described in WO-A-2007023719 and WO-A-2007023764
Figure imgf000071_0001
(S-XI) (S-XII)
in which
RN1 is halogen, (Ci-C4)-alkyl, methoxy, nitro, cyano, CF3, OCF3
Y, Z independently of one another are O or S,
ΠΝ is an integer from 0 to 4,
RN2 is (Ci-Ci6)-alkyl, (C2-C-6)-alkenyl, (C3-C6)-cycloalkyl, aryl, benzyl, halobenzyl, RN3 is hydrogen, (d-CeJalkyl,
O) one or more compounds from the group consisting of:
1 ,8-naphthalic anhydride,
0,0-diethyl S-2-ethylthioethyl phosphorodithioate (disulfoton), 4-chlorophenyl methylcarbamate (mephenate),
0,0-diethyl O-phenyl phosphorothioate (dietholate),
4-carboxy-3,4-dihydro-2H-1 -benzopyran-4-acetic acid (CL-304415, CAS Reg. No.: 31541 -57-8),
2-propenyl 1 -oxa-4-azaspiro[4.5]decane-4-carbodithioate (MG-838, CAS Reg. No.: 133993-74-5),
methyl [(3-oxo-1 H-2-benzothiopyran-4(3H)-ylidene)methoxy]acetate (from
WO-A-98/13361 ; CAS Reg. No.: 205121 -04-6),
cyanomethoxyimino(phenyl)acetonitrile (cyometrinil),
1 ,3-dioxolan-2-ylmethoxyimino(phenyl)acetonitrile (oxabetrinil),
4'-chloro-2,2,2-trifluoroacetophenone 0-1 ,3-dioxolan-2-ylmethyloxime (fluxofenim), 4,6-dichloro-2-phenylpyrimidine (fenclorim),
benzyl 2-chloro-4-trifluoromethyl-1 ,3-thiazole-5-carboxylate (flurazole),
2-dichloromethyl-2-methyl-1 ,3-dioxolane (MG-191 ), including the stereoisomers, and the salts customary in agriculture.
A mixture with other known active compounds, such as fungicides, insecticides, acaricides, nematicides, bird repellents, plant nutrients and soil structure improvers is likewise possible.
Some of the safeners are already known as herbicides and accordingly, in addition to the herbicidal action against harmful plants, also act by protecting the crop plants. The weight ratios of herbicide (mixture) to safener generally depend on the herbicide application rate and the effectiveness of the safener in question and may vary within wide limits, for example in the range from 200:1 to 1 :200, preferably from 100:1 to 1 :100, in particular from 20:1 to 1 :20. The safeners may be formulated analogously to the compounds to be safened or their mixtures with other herbicides/pesticides and be provided and used as a finished formulation or as a tank mix with the herbicides.
The required application rate of the compound to be safened varies depending, inter alia, on external conditions such as temperature, humidity and the type of herbicide used. It can vary within wide limits, for example between 0.001 and 10 000 g/ha or more of active substance; however, it is preferably between 0.5 and 5000 g/ha, particularly preferably between 0.5 and 1000 g/ha and very particularly preferably between 0.5 and 500 g/ha.
When the transgenic plant of the invention contains one or more other genes for tolerance towards other herbicides (as, for example, a gene which encodes a mutated or unmutated EPSPS which confers on the plant tolerance to glyphosate herbicides or a pat or bar gene conferring tolerance to glufosinate herbicides), or when the transgenic plant is naturally resistant to another herbicide (such as sulfonylurea tolerance), the method according to the invention can comprise the simultaneous or chronologically staggered application of one or more HPPD inhibitor herbicide(s) in combination with the said herbicide or herbicide combination, for example glyphosate and/or glufosinate and/or sulfonylurea herbicides, 2,4-D and/or dicamba.
The invention also relates to the use of the chimeric gene encoding the HPPD of the invention as a marker gene during the transformation of a plant species, based on the selection on the abovementioned HPPD inhibitor herbicides. The present invention also relates to a method for obtaining a plant resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5- oxadiazol-3-yl)benzamide, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamide, a triketone(s) and pyrazolinate(s), characterized in that the plant is transformed with a chimeric gene expressing in the plant an HPPD of the invention as defined herein.
In a particular embodiment, the invention relates to said method for obtaining a plant resistant to a one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones and pyrazolinates, characterized in that the HPPD protein of the invention comprises SEQ ID No. 17 (from the amino acid position 2 to the amino acid position 401 ), or a synthetic DNA encoding the HPPD of the invention adapted to the codon usage of corn, rice, wheat, soya spp, sugarcane, sugar beet, onion, Brassica species plants, or cotton.
In another particular embodiment, the invention relates to said method for obtaining a plant resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, and triketone(s), such as tembotrione, mesotrione, diketonitrile, isoxaflutole, sulcotrione, tefuryltrione, and bicyclopyrone. In another particular embodiment, the invention relates to said method for obtaining a plant resistant to one or more HPPD inhbitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones and pyrazoiinates, characterized in that the plant also comprises a plant-expressible chimeric gene encoding a PDH (prephenate
dehydrogenase) enzyme, or an enzyme with at least PDH.
The invention also relates to a method for controlling weeds in an area or a field, which method comprises planting in this area or field transformed plants resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones and pyrazoiinates which has been obtained according to the method described above, or transformed seeds which originates from them, and in applying a dose which is toxic for the weeds of said triketone or pyrazolinate HPPD inhibitor without significantly affecting the said transformed seeds or the said transformed plants.
The invention also relates to a method for obtaining oil or meal comprising growing a transformed plant resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N- (triazol-3-yl)arylcarboxamides, triketones, and pyrazoiinates which has been obtained according to the method described above, or a transformed seed which originates from such plant, optionally treating such plant or seed with a triketone or a pyrazolinate HPPD inhibitor, harvesting the grains and milling the grains to make meal and extract the oil.
The invention also relates to the use of an HPPD of the invention as described above, characterized in that the HPPD inhibitor herbicide(s) is/are selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)- or N-(triazol-3- yl)arylcarboxamides, triketones, preferably selected from the group consisting of tembotrione, mesotrione, topramezone, bicyclopyrone, tefuryltrione and sulcotrione. The present invention also relates to a host organism, in particular plant cells or plants, which contain a chimeric gene comprising a sequence encoding an HPPD according to the invention, and which also contain a gene functional in this host organism allowing overexpression of a prephenate dehydrogenase (abbreviated herein as PDH) enzyme.
The term "PDH enzyme", as used herein, refers to any natural or mutated PDH enzyme exhibiting the PDH activity of conversion of prephenate to HPP. In particular, said PDH enzyme can originate from any type of organism. An enzyme with PDH activity can be identified by any method that makes it possible either to measure the decrease in the amount of prephenate substrate, or to measure the accumulation of a product derived from the enzymatic reaction, i.e. HPP or one of the cof actors NADH or NADPH.
Many genes encoding PDH enzymes are described in the literature, and their sequences can be identified on the website http://www.ncbi.nlm.nih.gov/entrez/.
Particularly known is the gene encoding the PDH enzyme of the yeast Saccharomyces cerevisiae (Accession No. S46037) as described in Mannhaupt et al. (1989) Gene 85, 303-31 1 , of a bacterium of the Bacillus genus, in particular of the species B. subtilis (Accession No. P20692) as described in Henner et al. (1986) Gene 49 (1 ) 147-152, of a bacterium of the Escherichia genus, in particular of the species E. coli (Accession No. KMECTD) as described in Hudson et al. (1984) J. Mol. Biol. 180(4), 1023-1051 , or of a bacterium of the Erwinia genus, in particular of the species E. herbicola (Accession No. S29934) as described in Xia et al. (1992) J. Gen. Microbiol. 138(7), 1309-1316.
The invention further relates to a method for obtaining a host organism, particularly a plant cell or a plant, resistant to one or more HPPD inhibitor herbicide(s) by integrating in such organism at least one nucleic acid sequence or one chimeric gene as defined above, and by further transforming it, simultaneously or successively, with a gene functional in this host organism allowing expression of a PDH (prephenate dehydrogenase) enzyme.
In a particular embodiment, the invention relates to a method for obtaining a host organism, particularly a plant cell or a plant, resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamide, N-(tetrazol-4-yl)- or N-(triazol-3-yl)arylcarboxamide, triketones and pyrazolinates, particularly resistant to one or more HPPD inhibitor herbicide(s) selected from the group consisting of tembotrione, mesotrione, topramezone, bicyclopyrone, isoxaflutole, pyrasulfotole, tefuryltrione, and sulcotrione.
Means and methods which could be used for obtaining a host organism, particularly a plant cell or a plant, transformed both with a gene allowing overexpression of an HPPD enzyme, and with a gene allowing overexpression of a PDH enzyme are extensively described in WO 2004/024928, the content of which is hereby
incorporated by reference.
The reference in this specification to any prior publication (or information derived from it), or to any matter which is known, is not, and should not be taken as an
acknowledgement or admission or any form of suggestion that such prior publication (or information) or known matter forms part of the common general knowledge in the field of this invention.
FIGURES
FIG.1 Map of the plasmid pET32a::FMP44e
FIG.2 Map of the T-DNA inserted into the tobacco plants Map of the T-DNA inserted in the d liferents plants according to Examples 5 to 1 1 ; Abbreviations used for constructs haveing the following meanings:
A, B, and C: tobacco plants; D and E: tobacco and soybean plants; F, G, H, and I: soybean plants; and J: cotton plants.
35S: CaMV35S promoter, KanR:gene conferring resistance to the antibiotic kanamycin, nos: nopaline synthase promoter, Ter:
terminator, H6: sequence coding for an His TAG, OTP: optimized transit peptide, BAR (Bialaphos resistant, WO 87/05629) and PAT (phosphinothricin N-Acetyltransferase, EP 257542):genes conferring tolerance to Bialaphos, phosphinothricin or glufosinate, 2mEPSPS: gene coding for the double mutant (Thr102lle and Pro106Ser) EPSPS (5-enolpyruvylshikimate synthase) from Zea mays (US 20030027312), 2mAHAS: gene coding for the double mutant ALS (acetolactate synthase) from Arabidopsis (Pro197Ala and Trp574Leu; US 5378824, HA: histone promoter from
Arabidopsis gene, TEV: Tobacco Etch Virus, FMP44e: gene coding for FMP44 optimized for the expression in E coli with an sequence coding for an His TAG at its 5' extremity, FMP44d: gene coding for FMP44 optimized for the expression in dicotyledoneous plants, FMP44n is the native gene sequence coding for FMP44, LB, left border, RB, right border.
SEQUENCE LISTINGS
SEQ ID No. 1 : Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD SEQ ID No. 2: Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for E. coli, containing at the 5' end a nucleic acid sequence encoding an aspartate.
SEQ ID No. 3 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for E. coli, containing at the 5' end a nucleic acid sequence encoding a HIS tag (according to SEQ ID No. 4), followed by a nucleic acid stretch encoding 2 serines and 1 glycine, followed by a nucleic acid stretch encoding a protein binding site thrombin (according to SEQ ID No. 6) followed by a nucleic acid stretch endoding a glycine and methionine, followed by a nucleic acid stretch encoding a S-tag (according to SEQ ID No. 8), followed by a nucleic acid stretch encoding proline, aspartate, leucine, glycine, and threonine, followed by a nucleic acid stretch encoding the recognition site of an enterokinase (according to SEQ ID No. 10), followed by a nucleic acid encoding aspartate in front of the AUG start codon subsequently followed by a nucleic acid sequence encoding for an aspartate.
SEQ ID No. 4 Nucleic acid sequence encoding 6 consecutive histidines.
SEQ ID No. 5 Amino acid sequence derived from SEQ ID No. 4.
SEQ ID No. 6 Nucleic acid stretch encoding a protein binding site thrombin.
SEQ ID No. 7 Amino acid sequence derived from SEQ ID No. 6.
SEQ ID No. 8 Nucleic acid stretch encoding a S-tag.
SEQ ID No. 9 Amino acid sequence derived from SEQ ID No. 8.
SEQ ID No.10: Nucleic acid stretch encoding the recognition site of an
enterokinase.
SEQ ID No. 1 1 Amino acid sequence derived from SEQ ID No. 10.
SEQ ID No.12 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for E. coli containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide (according to SEQ ID No. 13) and an aspartate.
SEQ ID No. 13: Nucleic acid sequence encoding an optimized transit peptide.
SEQ ID No. 14: Amino acid sequence derived from SEQ ID No. 13.
SEQ ID No. 15: Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for dicotyledonous plants containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide (according to SEQ ID No. 13) and an aspartate. SEQ ID No. 16 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide (according to SEQ ID No. 13)
SEQ ID No. 17 Amycolicicoccus subflavus HPPD amino acid sequence derived from SEQ ID No. 1 .
SEQ ID No. 18 Protein encoded by SEQ ID No. 2.
SEQ ID No. 19 Protein encoded by SEQ ID No. 3.
SEQ ID No. 20 Protein encoded by SEQ ID No. 12.
SEQ ID No. 21 Protein encoded by SEQ ID No. 15.
SEQ ID No. 22 Protein encoded by SEQ ID No. 16.
SEQ ID No. 23 Nucleic acid sequence encoding Arabidopsis thaliana HPPD
SEQ ID No. 24 Arabidopsis thaliana HPPD amino acid sequence
SEQ ID No. 25 Nucleic acid sequence encoding Arabidopsis thaliana HPPD,
containing at the 5' end a nucleic acid encoding an alanine and 6 histidine amino acids
SEQ ID No. 26: Protein encoded by SEQ ID No. 25.
SEQ ID No. 27: Nucleid acid sequence encoding Arabidopsis thaliana HPPD
containing at the 5' end a nucleic acid encoding an OTP (Optimized Tansit Peptide; SEQ ID No. 13)
SEQ ID No. 28: Protein of SEQ ID No. 24 plus the OTP sequence (SEQ ID No. 14) located at the N-terminal extremity of the protein.
SEQ ID No. 29 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Zea mays plants
SEQ ID No. 30 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Brassica napus plants
SEQ ID No. 31 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Beta vulgaris plants
SEQ ID No. 32 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Gossypium hirsutum plants
SEQ ID No. 33 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Glycine max plants SEQ ID No. 34 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Hordeum vulgare plants
SEQ ID No. 35 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Oryza sativa plants
SEQ ID No. 36 Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for Triticum aestivum plants
SEQ ID No. 37: Nucleic acid sequence encoding Amycolicicoccus subflavus HPPD optimized for dicotyledonous plants containing at the 5' end a nucleic acid sequence encoding an optimized transit peptide
(according to SEQ ID No. 13).
EXAMPLES
Nomenclature being used below:
"FMP44n" represents the native gene sequence coding for the HPPD protein FMP44. "FMP44e" represents the gene sequence optimized for the expression in E. coli coding for the HPPD protein FMP44.
"FMP44d" represents the gene sequence otpimized for the expression in
dicotyledeneous plants such as for example in soybean, cotton, oil seed rape and sugarbeet coding for the HPPD protein FMP44.
"FMP44da" represents the gene sequence optimized for the expression in
dicotyledeneous plants such as for example in soybean, cotton, oil seed rape and sugarbeet coding for the HPPD protein FMP44 modified by inserting an aspartate in position 2.
"FMP44m" represents the gene sequence otpimized for the expression in Zea mays plants coding for the HPPD protein FMP44. The various aspects of the invention will be better understood with the aid of the experimental examples which follow. All the methods or operations which are described below in these examples are given by way of example and correspond to a choice which is made from among the different methods which are available for arriving at the same or similar result. This choice has no effect on the quality of the result and, as a consequence, any suitable method can be used by the skilled person to arrive at the same or similar result. The majority of the methods for manipulating DNA fragments are described in "Current Protocols in Molecular Biology" Volumes 1 and 2, Ausubel F.M. et al., published by Greene Publishing Associates and Wiley Interscience (1989) or in Molecular cloning, T. Maniatis, E.F. Fritsch, J. Sambrook, 1982, or in Sambrook J. and Russell D. (2001 ), Molecular Cloning: a laboratory manual (Third edition)
Example 1
Preparation of Amycolicicoccus subflavus HPPD (named FMP44) of SEQ ID No. 19 and of the Arabidopsis thaliana HPPD identified by SEQ ID No. 26.
The Arabidopsis thaliana AtHPPD coding sequence (1335 bp; Genebank AF047834; WO 96/38567) was initially cloned into the expression vector pQE-30 (QIAGEN, Hilden, Germany) in between the restriction sites of BamHI and Hindlll. The obtained vector was called "pQE30-AtHPPD".
The original Amycolicicoccus subflavus HPPD sequence (1206 bp) coding for the protein listed under the accession number F6EIA4 at UniProtKB/TrEMBL was modified and synthesized using an Escherichia coli K12 optimized codon usage (GeneArt, Regensburg, Germany, proprietary software) and cloned in a modified pBluescript vector (GeneArt, Regensburg, Germany).
At the 5' end, directly downstream to the ATG was inserted a nucleic acid sequence coding for an alanine was inserted. Upstream to the ATG, two additional cytosine base pairs were added in order to obtain a sequence corresponding to the recognition site of the restriction enzyme Ncol and downstream to the stop codon the sequences corresponding to the recognition site of the restriction enzyme BamHI were added. The resulting vector "pBluescript-FMP44e" was digested with the restriction enzymes Ncol and BamHI, the band migrating not to the length of the size of the vector approximately 3000 bp corresponding to the DNA was separated on an agarose gel per electrophoresis. Then the DNA coding for the HPPD was purified using the MinEluteTM Gel Extraction Kit (Qiagen, Hilden, Germany) and cloned into the pET32a (Novagen, Darmstadt, Germany) vector (see below) previously cut with the same restriction enzymes.
The cloning of the gene coding for FMP44 into pET32a was made in frame in order to obtain a fusion between a upstream N-terminal His-tag (composed of six histidine amino acids (also called "His6") and the protein FMP44 in E. coli cells. The plasmid possesses the trp-lac (trc) promoter and the laclq gene that provides the lac repressor in every E. coli host strain. The lac repressor binds to the lac operator (lacO) and restricts expression of the target gene; this inhibition can be alleviated by induction with Isopropyl β-D-l -thiogalactopyranoside (IPTG). The resulting vector was called "pET32a-FMP44e" (see Figurel ) and it was used to transform Escherichia coli BL21 cells (Merck, Darmstadt, Germany ).
For the AtHPPD (Arabidopsis thaliana HPPD) that was used as reference see
WO 2009/144079. Expression of HPPD was carried out in E. coli K-12 BL21 containing pQE30-AtHPPD or pET32a-FMP44e. Cells were allowed to grow until OD reached 0.5, then
expression was initiated from the trp-lac (trc) promoter by induction with 1 mM IPTG which binds to the lac repressor and causes its dissociation from the lac operon. Expression was carried out over 15 h at 28 °C.
To prepare the pre-starter culture, 2 mL of TB medium (100 g*mL"1 carbenicillin) were inoculated with 50 μΙ_ of an E. coli K-12 BL21 glycerol stock. The pre-starter culture was incubated at 37 °C with shaking at 140 rpm for 15 h. 200μΙ of the pre-starter culture was used to initiate the starter culture (5ml_ TB supplement with 100 Mg*L"1), which was incubated 3 h at 37°C.
To prepare the main culture, 400 mL of TB medium (100 g*mL"1 carbenicillin) were inoculated with 4 mL of the starter culture. This starter culture was incubated at 37 °C with shaking at 140 rpm until ODeoo 0.5 was reached. Then recombinant protein expression was induced with 400 μΙ of 1 M IPTG solution. The cells were allowed to grow for an additional hour under these conditions, then the temperature was lowered to 28°C and the culture was shaken at 140 rpm for 15 h. Cells were harvested by centrifugation at 6000 x g for 15 min at 4 °C. Then cell pellets were stored at -80 °C.
Isolation and purification of Hise-AtHPPD and Hise-FMP44 in native form
Lysis of cells Cells were lysed using Lysozyme, an enzyme that cleaves the 1 ,4-|]-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in peptidoglycan which forms the bacterial cell wall. Cell membranes were then disrupted by the internal pressure of the bacterial cell. In addition, the lysis buffer contained Benzonase® Nuclease, an endonuclease that hydrolyzes all forms of DNA and RNA without damaging proteins and thereby largely reduces viscosity of the cell lysate. Lysis under native conditions was carried out on ice.
For purification of Hise-tagged proteins the QIAexpress® Ni-NTA Fast Start Kit was used following the user manual instruction. Purification of Hise-tagged proteins by immobilized metal ion affinity chromatography (IMAC)
The cleared cell lysate (10 mL) obtained after centrifugation of the lysis reaction was loaded onto a Ni-NTA Fast Start Column from the QIAexpress® Ni-NTA Fast Start Kit (Qiagen, Hilden, Germany) and purification was carried out according to the instruction manual. The Hise-tagged protein was eluted with 2.5 mL of elution buffer. Desalting of HPPD solutions by gel filtration
HPPD solutions eluted from a Ni-NTA Fast Start Column with 2.5 mL of elution buffer were applied to a Sephadex G-25 PD-10 column (GE Healthcare, Freiburg, Germany) following the user manual instruction. After the whole sample had entered the gel bed, elution was performed with 3.5 mL of storage buffer. The HPPD solutions eluted from the desalting column were frozen at -80 °C in 1 ml_ aliquots.
Determination of HPPD protein concentration using the Bradford protein assay Protein concentration was determined using the standard Bradford assay (Bradford, (1976), Anal Biochem 72: 248-254).
Determination of purity of HPPD solutions using SDS-PAGE
The integrity of the eluted protein was checked by SDS-PAGE protein gel
electrophoresis using the gel NuPAGE® Novex 4-12 % Bis-Tris Gels (Invitrogen, Karlsruhe, Germany), approximately 10 g of protein were loaded. 10 μΙ_ of Laemmli Sample Buffer was added to 1 -10 μΙ_ of protein solution and the mixture was incubated at 90 °C for 10 min. After short centrifugation step, the whole mixture was loaded into a slot of an SDS gel previously fixed in a XCell SureLock™ Novex Mini-Cell gel chamber filled with NuPAGE® MOPS SDS Running Buffer (diluted from the 20 x- solution with ddH20). A voltage of 150 was then applied to the gel chamber for 1 h. For staining of protein bands, the gel was immersed in Coomassie Brilliant Blue R-250 Staining Solution. For destaining of the polyacrylamide gel, it was immersed in
Coomassie Brilliant Blue R-250 Destaining Solution until protein bands appear blue on a white gel.
Example 2
Kinetic characterization and evaluation of tolerance to HPPD inhibitors of HPPD enzymes "SEQ ID No. 19" and "SEQ ID No. 26".
The HPPD activity was checked by the standard spectrophotmetric assay (method extensively described in WO 2009/144079)
Determination of HPPD in vitro kinetic properties
Km , Vmax, and kcat values for different HPPD enzyme preparations and , Ki =Kon, and K-i for different HPPD inhibitors were determined or can be determined using a H PLC assay for measurements of HPPD activity. The assay mixtures contained in a volume of 1 ml 150 mM Tris-HCI buffer at pH 7.8, 10 mM sodium ascorbate, 650 units of bovine catalase (Sigma C30 (Sigma-Aldrich, Munich, Germany), 34 mg protein/ml, 23,000 units/mg), and appropriate amounts of HPP, purified HPPD enzyme and HPPD inhibitors. For Km, Vmax, and kcat value determination HPP concentrations in the assay mixture varied between 10 and 400 μΜ. For K, Ki
Figure imgf000085_0001
value
determination 2 mM HPP was or can be used. All assays were started by the addition of HPPD enzyme to the assay mixture and stopped at a series of times between 0 and 240 s by addition of 200 μΙ of the reaction mixture to reaction assay tubes containing 20 μΙ 10% perchloric acid. Precipitated protein was pelleted by a 5 minute
centrifugation at 10,000 g. 100 μΙ of the supernatant were loaded onto a 250 x 4mm Knauer (Berlin, Germany) Eurospher 100-5 C18-column equilibrated with 10% methanol, 0.1 % trifluoroacetic acid (buffer A). The column was eluted, also at 1 .5 ml/min, using a 4 minute wash with buffer A, followed by a 3 min wash with 95% methanol and by a further 2 minute wash with buffer A. The elution of HGA
(homogentisic acid) and HPP (hydroxyphenylpyruvate) was monitored at 292 nm. HGA elutes at around 5 minutes and HPP elutes later. A standard set of
concentrations of HGA were used to provide a standard curve in order to calibrate the 292 nm absorbance of the HGA peak versus HGA concentration. For Km and Vmax value determinations the initial rates of the HPPD reaction at different substrate concentrations were determined from plots of HGA formed versus time and fitted to the Michaelis-Menten equation for unireactant enzymes using the ID Business Solutions Ltd. (www.idbs.com) XLfit software suite. For the determination of K,
Figure imgf000086_0001
and values the time-courses of the HPPD reaction at different inhibitor concentrations were or can be fitted to the equations for Mechanism A, competitive inhibition, for tight-binding inhibitors (Cha, S. (1975) Tight-binding inhibitors - I.
Kinetic behaviour. Biochemical Pharmacology 24, 2177-2185) using the ID Business Solutions Ltd. XLfit software suite
Tablei : Kinetic characterization of HPPD enzymes (Arabidopsis thaliana "SEQ ID No. 26" and Amycolici coccus subflavus "SEQ ID No. 19") and their respective tolerance to the HPPD inhibitor diketonitrile. In below given Tablei , "Km" (Michaelis-Menten constant) means the kinetic parameter that is used to characterise an enzyme, and it is defined as the concentration of substrate that permits half maximal rate of the reaction. Km is further defined as the substrate concentration at which the reaction rate reaches half of its maximum value (Vmax/2) where Vmax has the meaning of being the maximum velocity of the reaction.
Figure imgf000086_0002
On the above Table 1 , it can be clearly seen, that the kinetic parameters Km of the bacterial HPPD "SEQ ID No. 19" and of the plant HPPD "SEQ ID No. 26" already showed significant differences (6.3μΜ vs. 52μΜ). Table 2: in vitro tolerance measurement of both HPPD enzymes from Arabidopsis (SEQ ID No. 26) and Amycolicicoccus subflavus (SEQ ID No. 19) to the HPPD inhibitor herbicide tembotrione. The given numbers represent the percentage of inhibition of the enzyme activity at different concentrations of the HPPD inhibitor herbicide tembotrione compared to the activity in absence of the HPPD inhibitor herbicide. These measurements were done using the spectrophoto-metric method extensively described in WO 2009/144079.
Figure imgf000087_0001
On the Table 2, it can be clearly seen that the HPPD from Amycolicicoccus subflavus (SEQ ID No. 19) is far more tolerant to the HPPD inhibitor herbicide tembotrione than the HPPD obtained from Arabidopsis thaliana (SEQ ID No. 26).
Determination of HPPD activity in presence of several HPPD inhibitors
In this content, plso-value means the log value of the concentration of inhibitor necessary to inhibit 50% of the enzyme activity in molar concentration. plso-values for HPPD inhibitors were determined from dose-response plots of HPPD activity versus inhibitor concentration using the assay extensively described in WO 2009/144079 at 2 mM fixed HPP concentration and 3 minutes fixed incubation time using the ID Business Solutions Ltd. XLfit software suite.
Table 3: Determination of pl50 HPPD enzymes (Arabidopsis thaliana "SEQ ID No. 26" and Amycolici coccus subflavus "SEQ ID No. 19") and their respective tolerance to the several listed below HPPD inhibitors tembotrione, diketonitrile, mesotrione, bicyclopyrone, pyrasulfotole, sulcotrione, pyrazolate, tefuryltrione, benzofenap, topramezone, and Example No 1 -188 (WO 2012/028579). The symbol "»" means that the value was far higher than the one indicated but could not be precisely calculated within in the range of concentration of inhibitor tested (, 5.0x10"6, 1 .0x10"5, 2.5x10"5, 4.0x10"5, 7.0x10"5, 1 .0χ1 θ 2.0x10"4 and 5.0x1 O^M).
Figure imgf000088_0001
with the last compound having the meaning of: Coumpond name Compound chemical
structure
Example No:.1 -188 j
as defined in:
(WO 2012/028579)
Table 4: Determination of percentage of inhibition in presence of 5.0x10"6M inhibitors compared to the activity measured in absence of the inhibitor for the HPPD originated from Arabidopsis thaliana (SEQ ID No. 26) and from Amycolicicoccus subfiavus (SEQ ID No. 19). [herein, n.d. means not determined]
Tembotrione Diketonitrile Mesotrione Bicyclopyrone
SEQ ID
No. 26 92 87 86 29
SEQ ID
No. 19 44 29 67 0
Pyrasulfotole Sulcotrione Pyrazolate Tefuryltrione Benzofenap
SEQ ID
No. 26 69 74 61 n.d. 90
SEQ ID
No. 19 0 48.6 14.1 20.8 43.3
Example No
1 -188
(WO
Topramezone 2012/028579)
SEQ ID
No. 26 78 80
SEQ ID
No. 19 16 22 with the last compound having the meaning of:
Figure imgf000090_0001
On the above Tables 2, 3 and 4, it can be clearly seen, that the bacterial HPPD
"SEQ ID No. 19" showed superior level of tolerance to all tested HPPD inhibitors than the plant at all tested HPPD inhibitor concentrations than observed by employing the HPPD "SEQ ID No. 26" under identical experimental conditions. Table 5: Determination of pl50 of HPPD from Amycolicicoccus subflavus (SEQ ID No. 19) and HPPD from Arabidopsis thaliana (SEQ ID No. 26) for tembotrione and diketonitrile using the HPLC method. The amount of homogentisate form in the reaction vial is evaluation after the reaction being stop after 3 minutes.
Figure imgf000090_0002
On the above Table 5, it can be clearly seen, that the bacterial HPPD "SEQ ID No. 19" showed superior level of tolerance to all tested HPPD inhibitors than the plant at all tested HPPD inhibitor concentrations than observed by employing the HPPD "SEQ ID No. 26" under identical experimental conditions. Table 6: Determination of specific activity of of HPPD from Amycolicicoccus subflavus (SEQ ID No. 19) and HPPD from Arabidopsis thaliana (SEQ ID No. 26) using the spectophometric method. Samples were incubated, and the reaction was stopped after 24 min. The specific activity wa estimated by g of protein.
Figure imgf000091_0001
On Table 6, it can be deary seen that no significative difference in activity between the plant (SEQ ID No. 26) and the bacterial HPPD (SEQ ID No. 19) can be observed as it has been previously described (WO 2002/046387). Therefore, it can be concluded that the observed tolerance is due intrinsinc properties of the enzyme and not to a disfunction or a slower activity into converting 4-hydroxyphenyl pyruvate into homogentisate.
Example 3: Influence of protein Tags on protein activity and tolerance to selected HPPD inhibitor herbicides:
Cloning of gene optimized for the expression in E. coli (SEQ ID No. 2) coding for FMP44 HPPD in the pSE420(RI)NX expression vector in order to produce the native protein. The resulting vector was called pSE420(RI)NX-F P44e.
The DNA corresponding to vector pET32a-FMP44e generated above was restricted with the enzymes Ncol and BamHI in order to separate the DNA fragment
corresponding to the gene FMP44e from the vector. The vector pSE420(RI)NX was restricted with the same enzymes. The insert and the vector were ligated to generate the vector pSE420(RI)NX-FMP44e.
In parallel, the DNA corresponding to vector pET32a-FMP44e generated above was restricted with the enzymes Mscl and BamHI in order to separate the DNA fragment corresponding to the gene FMP44e from the vector. The vector pSE420(RI)NX was restricted with the enzymes Eco53KI and BamHI. The isolated insert and vector were ligated and the resulting vector was called pSE420(RI)NX-His-Tag-FMP44e. Vectors will be used to transform E coli BL21 . Following the standard protocols described above, proteins will be produced. However, the protein will not be purified using His-Tag affinity column, but the HPPD activity will be directly estimated in the protein raw extract obtained from induced bacteria.
Example 4: Construction of chimeric genes for the evaluation HPPD inhibitor herbicide tolerance in tobacco plants. A) Construction of the chimeric genes
Binary vectors for dicotyledoneous (like tobacco and soybean) transformation were constructed with the 2xCaMV35S promoter or 2xCsVMV (Cassava Vein Mosaic Virus (Plant Mol. Biol. (1998), 37(6), 1055-1067) driving the expression of the gene FMP44d (SEQ ID No. 37), FMP44da (SEQ ID No. 15) with a codon usage optimized for the expression in dicotyledoneous plants or FMP44n (SEQ ID No. 16) with a native codon usage and at the 5'-extremity was added a sequence coding for an OTP, and further upstream a sequence TEV (Tobacco etch virus) to improve the stability of the mRNA in plants followed by the CaMV35S terminator. Additionally, the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator for glufosinate based selection during the transformation process and a 2mEPSPS gene cassette in which the gene is driven by an histone promoter from Arabidopsis thaliana to confer tolerance to the herbicide glyphosate to the transformed plants (see Fig.3 F, Fig. 3 G, Fig.3 H, and Fig.3 I).
The vectors pQE-30-AtHPPD was used for PCR-mediated attachment of an Ncol restriction site and of a sequence encoding an N-terminal Hise-Tag to the 5' ends and a Xbal restriction site to the 3' ends of AtHPPD.
The PGR product of the AtHPPD gene (Arabidopsis thaliana HPPD gene) was isolated from an agarose gel, cut with the restriction enzymes Ncol and Xbal, purified with the inElute™ PGR Purification Kit (Qiagen, Hilden, Germany) and cloned into the pSE420(RI)NX vector cut with the same restriction enzymes.
The generated vector was called "pSE420(RI)NX-AtHPPD" and was digested with the restriction enzymes Ncol and Xbal and cloned into the previously opened vector pRT100 (Toepfer et al., (1987), Nucleic Acids Res 15:5890) containing the CaMV35S promoter and CaMV35S terminator. The generated vector was called "pRT100- AtHPPD".
The vector pCR-TOPO-OTP was digested with the restriction enzymes Ncol and Xhol, and the DNA band corresponding to the OTP was cloned in the previously opened vector pRT100-AtHPPD with the above mentioned restriction enzymes. The resulting vector was subsequently digested with restriction enzyme Hindi 11 and the expression cassette of interest was cloned into the previously opened and dephosphorylated binary vector pBin19. The resulting vector was called "AtHPPDbv". The binary vectors "pBIN19-35S-OTP-FMP44e and AtHPPDbv were used to transform Agrobacterium tumefaciens (ATHV derived from EHA101 ) competent cells selected on YEB media supplemented with the antibiotics kanamycin and rifampicin (extensively described in the patent application US005925808A). For transforming tobacco, the binary vectors comprising 2xCaMV35S-TEV-OTP-FMP44d and 2xCsV V-OTP- FMP44d (as described above) were employed to transform Agrobacterium
tumefaciens (ATHV derived from EHA101 ) competent cells selected on YEB media supplemented with the antibiotics kanamycin and rifampicin (extensively described in the patent application US005925808A). These Agrobacterium strains containing the binary vectors of interest were used to transform leaf discs from tobacco Nicotiana tabacum L. cv SR1 NN plants, having approximately a size of 5x5mm2 as extensively described in Horsch et al., (1985), Science 227 ; 1229-1231 .
The leaf disks were co-cultivated for 2 days with Agrobacterium tumefaciens cells containing any of the binary vectors as described above. Then the leaf disks were transferred to a media allowing the regeneration of shoots for 6 weeks on MS
(Musharige and Skoog, (1962), Physiol Plant 15(3): 473-497) media supplemented with BAP (1 mg/mL; Benzylaminopurine), carbenicillin (250 mg/mL), cefotaxine (250 mg/mL), kanamycin (75 mg/mL) and tembotrione (10~6 M) or with BAP (1 mg/mL; Benzylaminopurine), carbenicillin (250 mg/mL), cefotaxine (250 mg/mL), glyphosate (1 mM) and tembotrione (10~6 M), depending on the resistance provided by the specific vector.
Regenerated calli were transferred on media to induce the development of roots for 6 to 12 weeks: MS (1/2), supplemented with carbenicillin (250 mg/mL), cefotaxine (250 mg/mL), kanamycin (75 mg/mL), or glyphosate (1 mM).
After 6 weeks on this media, the shoots transformed with Agrobacterium tumefaciens cells containing the binary vector AtHPPDbv, were transferred on the same media depleted of HPPD inhibitor tembotrione.
Rooting of calli
Regenerated shoot calli from a cell transformed with a nucleic acid sequence encoding the protein of SEQ ID No.28 comprising the HPPD sequence of Arabidopsis thaliana or the protein of SEQ ID No. 15 comprising the HPPD sequence of
Amycolicicoccus subflavus or the protein of SEQ ID No. 37 comprising the HPPD sequence of Amycolicicoccus subflavus were transferred to a media inducing root growth for 6 to 12 weeks.
Example 5: Glasshouse trials to evaluate tolerance to HPPD inhibitor herbicides of transgenic tobacco plants expressing a gene coding for tolerant HPPD protein
Preparation of transgenic plant lines expressing either Arabidopsis or FMP44 HPPD enzymes. Glasshouse testing for herbicide tolerance.
Response to tembotrione TO tobacco plants containing either the gene from
Arabidopsis thaliana coding for HPPD or the gene FMP44d from Amycolicicoccus subflavus coding for FMP44 HPPD, driven either by any of the promoters
2xCaMV35S-TEV or 2xCsVMV mentioned above (Example 4), were transferred to the glasshouse (28/20X), to develop further. The plants weretransferred to soil (ED73 mixed with sand and osmocote Pro) in the glasshouse (28/20°C). Two to three weeks later the TO tobacco plants were sprayed with
- tembotrione at 100gAI/ha prepared from a WP20 (wettable powder 20%) formulation supplemented with ammonium sulfate and methyl ester raps oil, or
- "blind formulation" made from a WP20 formulation without active ingredient (A!) supplemented with ammonium sulfate and methyl ester raps oil, and
were subsequently transferred to a growth chamber with adequate light conditions (20000Lux).
As control for the herbicide treatment, 3 wild type (wt) tobacco plants were also treated with an equivalent amount of tembotrione under identical conditions.
Seven days after the application (DAT) of the different HPPD inhibitor herbicides, the symptoms in tranformed plants were evaluated in comparison to the response observed on the wild type tobacco plants sprayed at the same time and under the same conditions as the tobacco plants containing the transgenes.
Table 7
The treated plants evaluated as "0" are looking like the untreated tobacco plants. The plants evaluated as "1 " display temporarly light bleaching phenotype due to the application of the herbicides. The plants evaluated as "2" display permanent light to strong bleaching symptoms. Finally the plants evalutated as "3" are looking like wild type tobacco plants submitted to the same treatment construct Treated 0 1 2 3 Tolerance
plants level wt none 3 3 0
FMP44 2xCaMV35S- 61 4 7 6 44 18%
TEV-OTP-
FMP44d
FMP44 CsVMV- 27 0 7 8 12 26%
OTP- FMP44d
On table 7, it can be clearly seen that a significant number of the tested tobacco plants expressing the tolerant HPPD FMP44 displayed a superior tolerance to tembotrione. Therefore it can be concluded that FMP44 is not only tolerant to HPPD inhibitor herbicides in vitro but also confer tolerance to plants such as the tested tobacco (taken as model plant) to HPPD inhibitor herbicides. It can be summarized from the above presented data, that the plants expressing the gene FMP44 from Amycolicicoccus subflavus coding for the FMP44 HPPD obtained from several independent transgenic events are highly tolerant to several HPPD inhibitor herbicides at doses applied under standard agronomic conditions. Seeds obtained from 1 primary tolerant transformant (TO plants, see above) were collected and sawn on soil (ED73 mixed with sand and osmocote Pro) in the glasshouse (28/20X).
Two to three weeks later the T1 tobacco plants of the 4 independent transgenic lines were sprayed with
- tembotrione at 1 00 gAI/ha prepared from a WP20 (wettable powder 20%) formulation supplemented with ammonium sulfate and methyl ester raps oil, or
- "blind formulation" made from a WP20 formulation without active ingredient (AS) supplemented with ammonium sulfate and methyl ester raps oil, and
were subsequently transferred to a growth chamber with adequate light conditions
(20000L.UX).
As control for the herbicide treatment, 10 wild type (wt) tobacco plants were also treated with an equivalent amount of tembotrione under identical conditions.
Seven days after the application (DAT) of the different HPPD inhibitor herbicides, the symptoms in tranformed plants were evaluated in comparison to the response observed on the wild type tobacco plants sprayed at the same time and under the same conditions as the tobacco plants containing the transgenes.
Table 8
The treated plants evaluated as "0" are looking like the untreated tobacco plants. The plants evaluated as "1 " display temporarly light bleaching phenotype due to the application of the herbicides. The plants evaluated as "2" display permanent light to strong bleaching symptoms. Finally the plants evalutated as "3" are looking like wild type tobacco plants submitted to the same treatment
Figure imgf000097_0001
On Table 8, it can be clearly seen that a significant number of the tested independent tobacco line expressing the tolerant HPPD FMP44 displayed a superior tolerance to tembotrione.
Therefore, it can be concluded that plants expressing FMP44 are tolerant to HPPD inhibitors. Example 6: Construction of binary vectors to express dicotyledoneous optimized variant in plants and glasshouse trial to evaluate tolerance of tobacco plants containing such variant Generation of the vector pFC01 17:
The vector pFCO1 17 (WO201 1/09460) was derived from pSF49, a descendant of pBL150u2 (EP508909). The bar cassette has first been cloned into pSF49 (NOt!/ Avrll), to obtain pFC020. The cassette contains lox sites for bar removal (c re/I ox system) in the event and some meganucleases sites (l-Scel, l-Crel, l-Ceul, Pi-See!) for further gene insertion at the same locus by homologous recombination. pFC020 contains convenient restriction sites for epsps cloning (Sbfl/ Swal) and HPPD cloning (Mscl/ Xhol). EPSPS is under the control of Ph4A7, promoter of Arabidopsis thaliana histone H4 gene (Chaboute M, et al., (1987), Plant Mol Biol, 8:179-191 ). The expression of the w336 mutated HPPD from Pseudomonas fluorescens (Boudec P. et al, (1999); US Patent US6245968) is driven by P35S, a fragment of the promoter region from the Cauliflower Mosaic Virus 35S transcript, followed by ENtev, an enhancer sequence of tobacco etch virus (Carrington J.c. and Freed D.D. (1990), J. Virol., 64, 1590-1597). HPPD proteins are targeted into the chloroplast via the optimized transit peptide TPotpc (Lebrun et al (1996); US5510471 ). The TPotpc- HPPDPfw336 sequence is codon optimized in order to fit dicotyledeneous plants such as for example soybean, cotton, sugarbeets, and oil seeds raps usage codon.
A gene with codon usage optimized for the expression in dicotyledoneous plants such as for example soybean, cotton, sugarbeets, and oil seeds raps coding for the HPPD protein FMP44 was designed, and named FMP44d (SEQ ID No. 37) and a gene with codon usage optimized for the expression in dicotyledoneous plants such as for example soybean, cotton, sugarbeets, and oil seeds raps coding for FMP44 including an additional aspartate in position 2 (SEQ ID No 18, compared to orginal SEQ ID No. 17) was designed and named FMP44da (SEQ ID No. 15). At its 5'- extremity, the nucleotide sequence coding for an optimized transit peptide to chloroplasts
(US5510471 ) was added. The gene was placed under the control of the CaMV 35S promoter with two copies of enhancers and Tobacco Etch Virus translation leader sequence (for reference see, binary vector pCMIRT15; Genebank accession:
HQ540318). At the 3' extremity of the gene coding for FMP44, CaMV 35S polyA signal followed by a CaMV35S sequence terminator (Genebank accession: HQ540318). The entire expression cassette was then cloned into the vector pFCO1 17
(WO201 1/09460), in which was previously removed the expression cassette containing the promoter P35S2, a fragment of the promoter region from the
Cauliflower Mosaic Virus 35S transcript, followed by ENtev, an enhancer sequence of tobacco etch virus (Carrington J.c. and Freed D.D. (1990), J. Virol., 64, 1590-1597), followed by the gene coding for mutant Pseudomonas fluorescens HPPD G336W. The final vector containing a gene coding for double mutant EPSPS, a gene coding for the PAT/BAR and a gene encoding the HPPD FMP44 was called pFCO-FMP44 (see Fig 3).
The binary vectors were respectively called and can be used for example to transform dicotyledenous plants, such as tobacco plants as described above. Sufficiently grown transformant plants are then tested for their tolerance to HPPD inhibitor herbicides, such as tembotrione. The development of the observed symptoms in response to the herbicidal treatment is evaluated and compared to the response of wild type plants under the same conditions.
Plant transformation, and selection of TO with an equivalent of
10OgAI tembotrione/ha As an example, rooted plants containing the T-DNA Prom2xCaMV35S-TEV-OTP- FMP44d-TerCaMV35S, will be transferred to the greenhouse under standard growth conditions. Following a period of acclimation of two weeks, the TO plants will be treated with a mixture containing an equivalent to 100 g tembotrione /ha prepared from a WP20 (wettable powder 20%) formulation supplemented with ammonium sulfate and methyl ester raps oil. Two weeks after the treatment, the symptoms due to the application of the herbicides will be evaluated. The plants will be classified in four categories. The treated plants evaluated as "0" are looking like the untreated tobacco plants. The plants evaluated as "1 " display temporarely a light bleaching phenotype. The plants evaluated as "2" display permanent light to strong bleaching symptoms. Finally the plants evalutated as "3" are looking like wild type tobacco plants submitted to the same treatment.
Example 7: Cloning of gene FMP44n and FMP44m coding for FMP44 HPPD in a vector to transform Zea mays plants.
FMP44n (SEQ ID No. 1 ) and FMP44m (SEQ ID No. 29) genes will be cloned under the control of a rice ubiquitin promoter and transferred into an approriate maize transformation vector. This vector will be used to transform Agrobacterium
tumefaciens.
Maize transformation
Immature embryos of maize of the Hi Type II hybrid line (Armstrong et al. (1991 ), Maize Genet. Coop. News, 65:92-93) are aseptically isolated from greenhouse-grown ears, 10-16 days after pollination. The embryos are infected and co-cultivated for 3 days with Agrobacterium tumefaciens cultures carrying an HPPD gene on the binary vector. After co-cultivation, the embryos are grown on selective callus inducing medium containing phosphinoticin (5 mg/l) and sub-cultured every 2 weeks till production of type II embryogenic callus. The callus is then grown on selective regeneration medium for the development of transgenic maize plants (Frame et al. (2002), Plant Physiology, 129:13-22). Regenerated rooted plants were then transferred to soil, and allow to grow and produce seeds in the glasshouse under standard conditions (28/20°C). Adult plants were grown until seed production and seeds were collected for further sowing, sufficiently developed plants will be treated with the respective HPPD inhibitor herbicides. Example 8: Soybean TO plant establishment and selection.
The vectors according to Example 6 will be employed for soybean transformation as described in WO201 1/09460.
Binary vectors for soybean transformation is, for example, constructed with the CaMV35 promoter driving the expression of the gene FMP44d (SEQ ID No. 37), FMP44da (SEQ ID No. 15) with a codon usage optimized for the expression in dicotyledoneous plants or FMP44n (SEQ ID No. 16) with a native codon usage and at the 5'extremity was added a sequence coding for an OTP, and further upstream a sequence TEV (Tobacco etch virus) to improve the stability of the mRNA in plants followed by the CaMV35S terminator. Additionally, the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator for glufosinate based selection during the transformation process and a 2mEPSPS gene cassette in which the gene is driven by an histone promoter from Arabidopsis thaliana to confer tolerance to the herbicide glyphosate to the transformed plants (see Fig.3 J). .
Soybean transformation is achieved using methods well known in the art, such as the one described using the Agrobacterium tumefaciens mediated transformation soybean half-seed explants described by Paz et al. (2006), Plant cell Rep. 25:206.
Transformants were identified using Isoxaflutole or tembotrione as selection marker. The appearance of green shoots was observed, and documented as an indicator of tolerance to the herbicide isoxaflutole or tembotrione. The tolerant transgenic shoots will show normal greening comparable to wild-type soybean shoots not treated with isoxaflutole or tembotrione, whereas wild-type soybean shoots treated with the same amount of isoxaflutole or tembotrione will be entirely bleached. This indicates that the presence of FMP44 protein enables the tolerance to HPPD inhibitor herbicides, like isoxaflutole or tembotrione.
Tolerant green shoots will be transferred to rooting media or grafted. Rooted plantlets will be transferred to the glasshouse after an acclimation period. Plants containing the transgene will be then sprayed with HPPD inhibitor herbicides, as for example with tembotrione at a rate of 100g Al/ha. Ten days after the application the symptoms due to the application of the herbicide will be evaluated and compared to the symptoms observed on a wild type plants under the same conditions.
Events expressing the FMP44 HPPD protein will be generated from the green shoots of above and transferred to the greenhouse. Four weeks after acclimation, i.e. plants at a developmental stage of 3-4 internodes will be treated with an equivalent amount to 100 g Al/ha tembotrione prepared from a WP 20 formulation supplemented with ammonium sulfate and methyl ester raps oil. Ten days after application, the symptoms caused by the application of the HPPD inhibitor herbicide will be evaluated and compared to the symptoms observed on treated non-transgenic wild-type soybean plants.
Example 9: Construction of binary cotton transformation vectors.
A binary vector for cotton transformation is, for example, constructed with the
CaMV35 promoter driving the expression of the gene FMP44d (SEQ ID No. 37), with a codon usage optimized for the expression in dicotyledoneous plants or the gene FMP44da (SEQ ID No. 15) with a codon usage optimized for the expression in dicotyledoneous plants or the gene FMP44n (SEQ ID No. 16) with a native codon usage and at the 5'extremity was added a sequence coding for an OTP, and further upstream a sequence TEV (Tobacco Etch Virus) to improve the stability of the mRNA in plants followed by the CaMV35S terminator. Additionally, the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator for glufosinate based selection during the transformation process and a 2mEPSPS gene cassette in which the gene is driven by an histone promoter from Arabidopsis thaliana to confer tolerance to the herbicide glyphosate to the transformed plants (see Fig.3 J). Example 10: Cotton TO plant establishment and selection.
Cotton transformation is achieved using methods well known in the art, especially preferred method in the one described in the PCT patent publication WO 00/71733.
Regenerated plants are transferred to the glasshouse. Following an acclimation period, sufficiently grown plants are sprayed with HPPD inhibitor herbicides as for example tembotrione equivalent to 100 gAI/ha supplemented with ammonium sulfate and methyl ester raps oil. Seven days after the spray application, the symptoms due to the treatment with the herbicide are evaluated and compared to the symptoms observed on wild type cotton plants subjected to the same treatment under the same conditions.
Example 1 1 : Construction of binary transformation vectors to generate plants tolerant to four herbicides with distinct modes of action.
A binary vector for dicotyledoneous plant transformation is, for example, constructed with the CaMV35 promoter driving the expression of the gene FMP44d (SEQ ID No. 37), with a codon usage optimized for the expression in dicotyledoneous plants or of the gene FMP44n (SEQ ID No. 16) with a native codon usage and at the 5'-extremity is added a sequence coding for an OTP followed by the CaMV35S terminator.
Additionally, the transformation vector also contains a PAT gene cassette in which the gene is driven by a CaVM35S promoter and followed by a CaMV35S terminator to confer tolerance to glufosinate to the plant expressing the gene, a 2mEPSPS gene cassette coding for the double mutant (Thr102lle and Pro106Ser) EPSPS in which the gene is driven by an histone promoter from Arabidopsis to confer tolerance to the herbicide glyphosate to the transformed plants, and an Arabidopsis thaliana 2mAHAS gene cassette encoding a tolerant ALS enzyme (Acetolactate synthase, Pro197Ala, Trp574Leu) driven by a CaMV35S promoter to confer tolerance to herbicides from the sulfonylurea or imidazolinone classes to the plant expressing this gene (see Fig.3 G). The gene cassettes will be finally cloned into the vector pHoe6/Ac (US 6,316,694), and the final vectors will be called pHoe6/FMP44d/PAT/EPSPS/AHAS and pHoe6/FMP44n/PAT/EPSPS/AHAS„ and is used to transform dicotyledoneous plants via Agrobacterium tumefaciens mediated state of the art methods. TO plants are transferred to soil, and after an acclimation period, sufficiently grown plants are sprayed successively with an herbicide from the HPPD inhibitor class, then with glufosinate and finally with an ALS inhibitor herbicide, preferably with a compound selected from the group of sulfonylureas or sulfonylaminocarbonyltriazolinones .

Claims

Claims
1 . A chimeric gene comprising a coding sequence operably-linked to a plant- expressible promoter, characterized in that the coding sequence comprises a nucleic acid sequence which encodes an Amycolici coccus hydroxyphenylpyruvate
dioxygenase (HPPD) protein, or a protein with at least 88 % sequence identity to a Amycolici coccus HPPD protein.
2. The chimeric gene according to claim 1 , characterized in that the HPPD protein is an Amycolici coccus subflavus HPPD protein or a protein with at least 88 % sequence identity to the Amycolicicoccus subflavus HPPD protein.
3. A chimeric gene of claims 1 or 2, wherein a DNA encoding said protein can be obtained from Amycolicicoccus DNA by using a primer or probe of at least 20 nucleotides, which hybridizes to the DNA of SEQ ID No. 1 .
4 The chimeric gene according to any one of the claims 1 to 3, characterized in that it encodes an HPPD protein comprising the amino acid sequence of
SEQ ID No. 17 from amino acid position 2 to amino acid position 401 or a protein with at least 88 % sequence identity to the amino acid sequence of SEQ ID No. 17 from amino acid position 2 to amino acid position 401 .
5. The chimeric gene according to any one of the claims 1 to 4, characterized in that it encodes an HPPD protein sequence and comprises the nucleotide sequence of SEQ ID No. 12 from nucleotide position 382 to nucleotide position 1584, or a DNA hybridizing to such sequence under stringent hybridization conditions.
6. The chimeric gene according to any one of the claims 1 to 4, characterized in that it encodes an HPPD protein sequence and comprises the nucleotide sequence of SEQ ID No. 15 from nucleotide position 379 to nucleotide position 1581 , or a DNA hybridizing to such sequence under stringent hybridization conditions.
7. The chimeric gene according to any one of the claims 1 to 4, characterized in that it encodes an HPPD protein sequence and comprises the nucleotide sequence of SEQ ID No. 37 from nucleotide position 376 to nucleotide position 1578, or a DNA hybridizing to such sequence under stringent hybridization conditions.
8. The chimeric gene according to any one of the claims 1 to 4, characterized in that it encodes an HPPD protein sequence and comprises the nucleotide sequence of SEQ ID No. 16 from nucleotide position 376 to nucleotide position 1578, or a DNA hybridizing to such sequence under stringent hybridization conditions.
9. The chimeric gene according to any one of claims 1 to 8 characterized in that it comprises downstream of the HPPD coding sequence, a nucleic acid sequence which encodes a transit peptide active in plants so that a transit peptide/HPPD fusion protein is encoded by said chimeric gene.
10. A vector comprising at least one chimeric gene according to any one of claims 1 to 9.
1 1 . A plant cell, plant part, plant, or seed, characterized in that it comprises a chimeric gene according to any one of claims 1 to 9.
12. The plant cell, plant part, plant or seed of claim 1 1 , which also comprises a chimeric gene encoding a prephenate dehydrogenase (PDH) enzyme.
13. The plant cell, plant part, plant or seed of claim 1 1 or 12 further comprising one or more chimeric gene(s) conferring tolerance to growth regulators, preferably to 2,4-D or dicamba, and/or herbicides inhibiting the acetolactate synthase (ALS), the EPSP synthase (EPSPS) and/or the glutamine synthase (GS).
14. A method for obtaining a plant tolerant to one or more HPPD inhibitor herbicide(s), characterized in that a chimeric gene is introduced into said plant according to one of claims 1 to 10.
15. A method for controlling weeds in an area or a field which contains or is to be planted with plants or seed according to claim 1 1 , 12 or 13, which method comprises applying, to the said area or field, a dose of one or more HPPD inhibitor herbicide(s) which is toxic for said weeds, without significantly affecting the seeds or plants according to claim 1 1 , 12 or 13.
16. The method for controlling weeds according to claim 15, characterized in that the HPPD inhibitor is herbicide(s) to be applied is/are selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol-4-yl)arylcarboxamides, N-(triazol-3-yl)arylcarboxamides, isoxaflutole, tembotrione, mesotrione, sulcotrione, pyrasulfotole, topramezone, 2-cyano-3-cyclopropyl-1 -(2-S02CH3-4- CF.3phenyl)propane-1 ,3-dione and 2-cyano-3-cyclopropyl-1 -(2-S02CH.3-4-2,3 Cb phenyl)propane-1 ,3-dione, bicyclopyrone, benzobicyclon, tefuryltrione, diketonitrile, and pyrazoxyfen.
17. A method for obtaining oil or meal comprising growing a plant according to claim 1 1 , 12, or 13, optionally treating such plant with one or more HPPD inhibitor herbicide(s) selected from the group consisting of N-(1 ,2,5-oxadiazol-3- yl)benzamides, N-(tetrazol-4-yl)arylcarboxamides, N-(triazol-3-yl)arylcarboxamides, isoxaflutole, tembotrione, mesotrione, sulcotrione, pyrasulfotole, topramezone, 2-cyano-3-cyclopropyl-1 -(2-S02CH3-4-CF3phenyl)propane-1 ,3-dione and 2-cyano-3- cyclopropyl-1 -(2-S02CH3-4-2,3 Cb phenyl)propane-1 ,3-dione, bicyclopyrone, benzobicyclon, tefuryltrione, diketonitrile, and pyrazoxyfen., harvesting the grains and milling the grains to make meal and optionally extract the oil.
18. Use of a Amycolicicoccus HPPD or an HPPD with at least 88 % sequence identity to a Amycolicicoccus HPPD to render plants tolerant to one or more HPPD inhibitor herbicide(s).
19. The use according to claim 18, wherein the HPPD inhibitor herbicides are selected from the group consisting of N-(1 ,2,5-oxadiazol-3-yl)benzamides, N-(tetrazol- 4-yl)arylcarboxamides, N-(triazol-3-yl)arylcarboxamides, isoxaflutole, tembotrione, mesotrione, sulcotrione, pyrasulfotoie, topramezone, 2-cyano-3-cyclopropyl-1 -(2- S02CH3-4-CF3phenyl)propane-1 ,3-dione and 2-cyano-3-cyclopropyl-1 -(2-S02CH3-4- 2,3 C phenyl)propane-1 ,3-dione, bicyclopyrone, benzobicyclon, tefuryltrione, diketonitrile, and pyrazoxyfen.
PCT/EP2012/075903 2011-12-22 2012-12-18 Plants tolerant to hppd inhibitor herbicides. WO2013092552A1 (en)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
EP11195296 2011-12-22
EP11195296.6 2011-12-22
US201161581128P 2011-12-29 2011-12-29
US61/581,128 2011-12-29

Publications (1)

Publication Number Publication Date
WO2013092552A1 true WO2013092552A1 (en) 2013-06-27

Family

ID=48667745

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2012/075903 WO2013092552A1 (en) 2011-12-22 2012-12-18 Plants tolerant to hppd inhibitor herbicides.

Country Status (2)

Country Link
AR (1) AR089251A1 (en)
WO (1) WO2013092552A1 (en)

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2014170345A2 (en) 2013-04-19 2014-10-23 Bayer Cropscience Ag Method for improved utilization of the production potential of transgenic plants
JP2017514789A (en) * 2014-03-11 2017-06-08 バイエル・クロップサイエンス・アクチェンゲゼルシャフト N- (1,3,4-oxadiazol-2-yl) aryl carboxamides or their for controlling unwanted plants in the area of transgenic crop plants that are resistant to HPPD inhibitor type herbicides Use of salt
WO2019233863A1 (en) 2018-06-04 2019-12-12 Bayer Aktiengesellschaft Herbicidally active bicyclic benzoylpyrazoles

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010079117A2 (en) * 2009-01-07 2010-07-15 Bayer Cropscience Ag Transplastomic plants free of the selectable marker
WO2011076892A1 (en) * 2009-12-23 2011-06-30 Bayer Cropscience Ag Plants tolerant to hppd inhibitor herbicides

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010079117A2 (en) * 2009-01-07 2010-07-15 Bayer Cropscience Ag Transplastomic plants free of the selectable marker
WO2011076892A1 (en) * 2009-12-23 2011-06-30 Bayer Cropscience Ag Plants tolerant to hppd inhibitor herbicides

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
DATABASE UniProt [Online] 27 July 2011 (2011-07-27), "SubName: Full=4-hydroxyphenylpyruvate dioxygenase;", XP002670500, retrieved from EBI accession no. UNIPROT:F6EIA4 Database accession no. F6EIA4 *
DUFOURMANTEL NATHALIE ET AL: "Generation and characterization of soybean and marker-free tobacco plastid transformants over-expressing a bacterial 4-hydroxyphenylpyruvate dioxygenase which provides strong herbicide tolerance", PLANT BIOTECHNOLOGY JOURNAL, BLACKWELL, OXFORD, GB, vol. 5, no. 1, 1 January 2007 (2007-01-01), pages 118 - 133, XP002531775, ISSN: 1467-7644, DOI: 10.1111/J.1467-7652.2006.00226.X *

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2014170345A2 (en) 2013-04-19 2014-10-23 Bayer Cropscience Ag Method for improved utilization of the production potential of transgenic plants
JP2017514789A (en) * 2014-03-11 2017-06-08 バイエル・クロップサイエンス・アクチェンゲゼルシャフト N- (1,3,4-oxadiazol-2-yl) aryl carboxamides or their for controlling unwanted plants in the area of transgenic crop plants that are resistant to HPPD inhibitor type herbicides Use of salt
WO2019233863A1 (en) 2018-06-04 2019-12-12 Bayer Aktiengesellschaft Herbicidally active bicyclic benzoylpyrazoles

Also Published As

Publication number Publication date
AR089251A1 (en) 2014-08-06

Similar Documents

Publication Publication Date Title
US8853496B2 (en) Plants tolerant to HPPD inhibitor herbicides
EP2516633B1 (en) Plants tolerant to hppd inhibitor herbicides
US8853495B2 (en) Plants tolerant to HPPD inhibitor herbicides
EP2516632B1 (en) Plants tolerant to hppd inhibitor herbicides
EP2516630B1 (en) Plants tolerant to hppd inhibitor herbicides
WO2013092552A1 (en) Plants tolerant to hppd inhibitor herbicides.
WO2013092551A1 (en) Plants tolerant to hppd inhibitor herbicides
WO2013092555A1 (en) Plants tolerant to hppd inhibitor herbicides

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 12803516

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 12803516

Country of ref document: EP

Kind code of ref document: A1