WO2013076159A1 - Nanoparticules biarsénicales pour le marquage in vivo - Google Patents
Nanoparticules biarsénicales pour le marquage in vivo Download PDFInfo
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- WO2013076159A1 WO2013076159A1 PCT/EP2012/073265 EP2012073265W WO2013076159A1 WO 2013076159 A1 WO2013076159 A1 WO 2013076159A1 EP 2012073265 W EP2012073265 W EP 2012073265W WO 2013076159 A1 WO2013076159 A1 WO 2013076159A1
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Classifications
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K49/00—Preparations for testing in vivo
- A61K49/001—Preparation for luminescence or biological staining
- A61K49/0013—Luminescence
- A61K49/0017—Fluorescence in vivo
- A61K49/0019—Fluorescence in vivo characterised by the fluorescent group, e.g. oligomeric, polymeric or dendritic molecules
- A61K49/0021—Fluorescence in vivo characterised by the fluorescent group, e.g. oligomeric, polymeric or dendritic molecules the fluorescent group being a small organic molecule
- A61K49/0041—Xanthene dyes, used in vivo, e.g. administered to a mice, e.g. rhodamines, rose Bengal
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K49/00—Preparations for testing in vivo
- A61K49/001—Preparation for luminescence or biological staining
- A61K49/0063—Preparation for luminescence or biological staining characterised by a special physical or galenical form, e.g. emulsions, microspheres
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K1/00—General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
- C07K1/13—Labelling of peptides
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B82—NANOTECHNOLOGY
- B82Y—SPECIFIC USES OR APPLICATIONS OF NANOSTRUCTURES; MEASUREMENT OR ANALYSIS OF NANOSTRUCTURES; MANUFACTURE OR TREATMENT OF NANOSTRUCTURES
- B82Y15/00—Nanotechnology for interacting, sensing or actuating, e.g. quantum dots as markers in protein assays or molecular motors
Definitions
- the present invention relates to the in vivo labeling of proteins.
- the present invention further describes functionalized nanoparticles with fluorescent labels.
- the present invention further describes the use of biarsenical labels and their binding to tetracysteine peptide tags.
- Fluorescent probes/labels are hence been most sought after as imaging tool and several developments have been made to enhance its applicability and functional properties for scientific research.
- fluorescent probes have used for imaging, particularly small organic fluorescent dyes, nanocrystals ('quantum dots'), and combinations of these probes.
- These probes are suitable protein detection in live vs. fixed cells such as quantification of protein expression, trafficking, localization, activity state, protein dynamics and potential combination of confocal imaging (live and fixed) with electron microscopy
- Qdots Quantum dots
- conjugated biomolecules generally get disintegrated or separated from the probe during harsh environmental conditions like acidic pH or are directed to another signaling pathway in the cell.
- linker-adapter technology do not offer fluorescent based tracking as the fluorescent dye is coupled to nanoparticles independent of biomolecule conjugation. Hence there is no existing tool which could monitor both protein and nanoparticle localization during the imaging of living cells.
- biarsenical labels which can bind to a tetracysteine tag (CCXXCC) SEQ ID NO:1 and become fluorescent upon binding [reviewed in e.g. Tsien et al. (2005) FEBS Lett. 579, 927-932]. Certain types of these labels are cell permeable. Labeled protein complexes can be isolated via affinity purification using biarsenical labels coupled to large magnetic beads (W 005040197).
- the first aspect of the invention relates to methods of generating a detectable protein into a cell comprising the steps of:
- a cell comprising a protein with a tetracysteine peptide tag with amino acid sequence CCXXCC [SEQ ID NO:1 ].
- nanoparticle with a diameter between 2 and 200 nm, comprising a biarsenical detectable label
- Embodiments of these methods further comprise the step of detecting the binding of the label to the tetracysteine peptide tag in the cell.
- Further embodiments of these methods comprise the step of detecting the disappearance of the label from the tetracysteine peptide tag in the cell.
- the nanoparticle has a diameter between 1 and 100 nm.
- the particle further comprises a biocompatible coating.
- the coating is selected from the group consisting of a phospholipid, carbohydrate, dimercaptosuccinic acid and silane.
- the nanoparticle further comprises a moiety which targets the particle to a specific cell compartment.
- the tetracysteine protein tag has the sequence CCPGCC [SEQ ID NO: 2].
- the detectable label is a fluorescent label.
- a second aspect of the present invention relates to nanoparticles with a diameter of between 2 and 100 nm comprising :
- biocompatible coating selected from the group consisting of a phospholipid, carbohydrate, dimercaptosuccinic acid and silane.
- these particle are magnetic particles.
- these particles have a diameter between 2 and 50 nm.
- a further aspect of the present invention relates to the use of the above particles in in vivo labeling methods.
- kits comprising :
- a polynucleotide encoding a fusion protein comprising a tetracysteine sequence a nanoparticle comprising a biarsenical detectable label.
- the nanoparticle has a diameter between 2 and 100 nm.
- the present invention describes the design of nanoparticles with a reversible fluorescent ON-OFF system for monitoring the particles themselves as well as their binding to a protein.
- the use of the functionalized nanoparticles of the present invention has the following advantages: -major reduction in perturbation of host protein function compared to other methods of introducing a detectable label into a cell,
- nanoparticles allow protein trafficking in subcellular compartments
- the methods and particles of the present invention allow single molecule tracking of nanoparticle-biomolecule complexes
- the methods and particles of the present invention allow visualization of receptor activation at the cell surface.
- the present invention further allows evaluating target protein expression, and nanoparticle pharmacokinetics.
- the particles are suitable for uptake by a cell and for intracellular uptake.
- the present invention allows to detect particle transport within the cell, and eventual binding to a protein. Both phenomena can be observed independently from each other. Indeed the particle itself, or a dye incorporated therein, or attached therewith, can be visualized. Upon binding with a protein, the flash label appears and will disappears again when the protein-particle complex is degraded in the cell under reducing conditions.
- Figure 1 illustrates the generation of a fluorescent signal upon binding of a biarsenical label with a tetracysteine peptide tag.
- Figure 2 illustrates an embodiment of the coating of a nanoparticle and the attachment of a biarsenical label
- FIAsH-EDT2 Design of FIAsH-EDT2 with a maleamide end group for coupling with thiol- functionalized DMSA-SPMNPs.
- FIAsH-EDT2-SPMNPs-Peptide complex in vitro/ in vivo conditions for live imaging.
- nanoparticle relates to a particle of any shape with a size between 2 and 100 nm
- “tetracysteine peptide tag” relates to hexapeptide sequence with general structure Cys-Cys-Xaa-Xaa-Cys-Cys (CCXXCC) [SEQ ID NO:1].
- biasenical detectable label refers to As comprising molecules as disclosed in EP1032837 and have the following formula:
- each X 1 or X 2 independently, is CI, Br, I, OR a , or SR a , or
- R a is H, C 1 -C4 alkyl, CH 2 CH 2 OH, CH 2 COOH, or CN;
- Z is 1 ,2-ethanediyl, 1 ,2-propanediyl, 2,3-butanediyl, 1 ,3-propanediyl, 1 ,2 benzenediyl, 4-methyl-1 ,2-benzenediyl, 1 ,2-cyclopentanediyl, 1 ,2-cyclohexanediyl, 3-hydroxy-1 ,2-propanediyl, 3-sulfo-1 ,2-propanediyl, or 1 ,2-bis(carboxy)-1 ,2- ethanediyl;
- Y 1 and Y 2 independently, are H or CH 3 ;
- M is O, S, CH 2 , C(CH 3 ) 2 , or NH;
- R 1 and R 2 independently, are OR a , OAc, NR a R b , or H;
- R 3 and R 4 independently, are H, F, CI, Br, I, OR a , or R a ; or R 1 together with R 3 , or R 2 together with R 4 , or both, form a ring in which
- R 1 or R 3 is C 2 -C 3 alkyl and the other is NR a and (ii). one of R 2 and R 4 is C 2 -C 3 alkyl and the other is NR a ;
- R b is H, C 1 -C4 alkyl, CH 2 CH 2 OH, CH 2 COOH, or CN;
- X 1 and X 2 together with the arsenic atom, form a ring, with formula
- Q is chosen from one of the following spirolactones:
- a first aspect of the invention relates to methods of generating a detectable protein into a cell.
- This method provides a significant improvement over the existing in vivo labeling methods using biarsenical labels.
- These biarsenical labels exist in cell impermeable versions for extracellular labeling and cell permeable versions for intracellular labeling. These cell permeable labels enter the cell in an aspecific way.
- the label is attached to a nanoparticle which allows the particle to enter the cell via an active process. Particles with a diameter above 100 nm typically enter the cell via phagocytosis. Particles with a diameter below 100 nm 2-100 nm typically enter the cell via endocytosis.
- the methods of the present invention are applicable to animal cells (comprising as well cells of invertebrates as vertebrates (in particular mammalian cells such human or murine cells)).
- the methods are equally suitable for plant cells, fungi and bacteria. It is noted in this context that the so-called cell permeable versions of the biarsenical labels do not readily enter bacterial or yeast cells.
- the use of nanoparticles to introduce a biarsenical label into a bacterial or yeast cell provides an additional advantaged compared to the state of the art.
- Typical diameters of nanoparticles suitable for the uptake by endocytosis are particles with a diameter between 2 and 60 nm, between 5 and 15 nm or between 8 and 12 nm.
- the particle can be made of, or can comprise, glass, ceramics, metal (e.g. a noble metal such as gold, or a metal with magnetic properties), plastics such as polystyrene, methylstyrene, acrylic polymers.
- the particle is made of a compound which is degradable in the cell (e.g. protein, carbohydrate).
- suitable materials used in the manufacture of nanoparticles include agarose beads, latex, cross-linked dextrans, cellulose, and nylon.
- the particle further comprises functional groups for the coupling of the label to the particle.
- the particle comprises further a coating to make the particle cell compatible such that the particle can be internalized via the cell.
- the coating is selected form the group consisting of pospholipids, carbohydrates, dimercaptosuccinic acid (DMSA), and silane.
- Particular phospholipids in the context of the present invention can comprise amino end-groups, PEG end-groups, carboxy end-groups, thiol end-grouped or combination of these different end-groups.
- Particular carbohydrates in the context of the present invention are lectins, sucrose and galactose.
- silanese in the context of the present invention can comprise amino end- groups, PEG end-groups, carboxy end-groups, thiol end-groups or combination of these end-groups.
- Nanoparticles can be composed of a variety of materials including noble metals (e.g. Au , Ag , Pt , Pd), semiconducting materials (e.g. CdSe, CdS, ZnS , Ti0 2 , PbS, InP, Si), magnetic compounds (e.g. Fe 3 0 4 , Co, CoFe 2 0 4 , FePt , CoPt) and mixtures thereof.
- noble metals e.g. Au , Ag , Pt , Pd
- semiconducting materials e.g. CdSe, CdS, ZnS , Ti0 2 , PbS, InP, Si
- magnetic compounds e.g. Fe 3 0 4 , Co, CoFe 2 0 4 , FePt , CoPt
- Typical biocompatible coatings further include Poly(amidoamine), Poly(D-glucosamido ethylmethacrylate), Poly(2-lactobionamido ethylmethacrylate), Alkyl thioether end- functionalised poly(methacrylic acid), Polyvinyl pyrollidone), PAA modified with cysteamine and ethylene diamine, Poly(maleic anhydride-alt-1 -octadecene), Poly(butylacrylate), Poly(ethylacrylate), Pyrene-poly(dimethylaminoethyl methacrylate),Poly[2-(methacryloyloxy) ethylphosphorylcholine]-block-(glycerol monomethacrylate), alpha-Acetylene-poly(tert-butyl acrylate), Poly(N- isopropylacrylamide), Poly(L,L-lactic acid), Poly(epsilon)-caprolactone), Poly(2- me
- the detectable label which is used in the methods and compounds of the present invention is a biarsenical label such as disclosed in the art in various publication of Tsien et al., wherein As'" atoms can bind to vicinal dithiols in peptides and proteins.
- the spacing of two As atoms (biarsenic) in the label allows the binding of the label to a peptide sequence with general structure CCXXCC [SEQ ID NO:1 ].
- a particular sequence providing a conformation which minimizes aspecific binding is the peptide with aminoacid sequence CCPGCC [SEQ ID NO: 2].
- the fluorescence of the label increases dramatically. In other words the label only becomes detectable upon binding of the label to its target protein.
- the binding of the biarsenical label on the particle to a protein is determined by the presence of a recombinant protein comprising the tetracysteine tag.
- a polynucleotide construct encoding a fusion protein of a protein of interest with a tetracysteine is transfected or transformed into a cell (viral proteins such as structural proteins - matrix, capsid and nucleocaposid, viral enzymes and viral envelope protein (Pereira C.F.
- Additional targeting moieties can be provide on the nanoparticles to optimize the trafficking to certain organelles, or subcellular compartments of a cell, for example TOM 22 antibody for targeting to the mitochondrion, transferrin ligand for cell membrane, heparan sulfate proteoglycans for endocytotic compartments, lamp-1 antibody for targeting lysosomal compartments and protein G coated beads for targeting nucleus
- the nanoparticle and/or the biarsenical label can be further modified to include a detectable group in addition to the detectable label that is generated upon binding of the biarsenical label to a tetracysteine tag.
- detectable groups are known in the art and include for example a fluorescent group, luminescent group, phosphorescent group, spin label, photosensitizer, photocleavable moiety, chelating center, heavy atom, radioactive isotope, isotope detectable by nuclear magnetic resonance, paramagnetic atom, and combinations thereof.
- a tetracysteine tagged protein can be introduced into a cell by e.g. electroporation.
- a fluorescent signal is generated upon binding of the biarsenical label with the tetracysteine peptide tag, whereby the signal remains visible as long as the label remains attached to the tag.
- This label allows its detection from the binding of the label to the protein until the degradation of the protein.
- the protein Upon degradation of a protein in the lysosome, the protein is in a strongly reducing environment, which results in the release of the biarsenical label from the protein, thereby loosing its fluorescence.
- Another aspect of the present invention relates to a composition
- a composition comprising nanoparticles with a diameter of between 2 and 200 nm, particularly between 2 and 100 nm, more particularly between 2 and 50 nm, with attached thereto a biarsenical label.
- Larger particles with biarsenical labels have been described in the art, however the particles have diameters above 100 nm, to allow a convenient manipulation in affinity purification methods.
- Smaller nanoparticles with a biarsenical label and their use in in vivo labeling methods have not been described earlier. Since these prior art particles have not been used in the context of cellular uptake they neither have a coating such as a phospholipid, carbohydrate, dimercaptosuccinic acid or a silane.
- a further aspect of the present invention relates to a kit comprising a polynucleotide encoding a fusion protein comprising a tetracysteine sequence and a nanoparticle comprising a biarsenical detectable label as disclosed above.
- a polynucleotide will be provided in the form of a vector for delivery into a cell.
- the current application is applicable in wide range of biological applications, protein trafficking, stem cell tracking, gene delivery and drug delivery.
- FIAsH-EDT2 is a small fluorescent probe that has been established for site-specific protein labeling of proteins in intact live cells [Griffin et al., 1998].
- FIAsH is nonfluorescent by itself but becomes highly fluorescent when bound to a specific sequence consisting of at least six amino acids (tetracysteine peptide tag).
- the biarsenical labeling technology works through the high-affinity interaction of arsenic for thiols wherein FIAsH is a fluorescein derivative and are virtually non-fluorescent when bound to ethane dithiol (EDT2).
- EDT2 ethane dithiol
- FIAsH-EDT2 are coupled to nanoparticles as illustrated in figure 2. Uptake of the nanoparticle by a cell allows to decipher the protein pathway to which the biarsenical label is coupled and allows to the detect the protein activity in subcellular compartments at the single cell level. In addition, FIAsH is much smaller than GFP and therefore there is lower risk that FIAsH-EDT2 will disturb the overall structure of a protein than other fluorescent probes.
- SPMNPs superparamagnetic nanoparticles
- DMSA biocompatible dimercaptosuccinic acid
- FIAsH-EDT2 labels are coupled to the nanoparticles via maleamide end group for coupling with thiol-functionalized DMSA-SPMNPs.
- the particle Upon entry into a cell the particle will be processed by the cell. Upon binding of the particle to the tagged protein, the a fluorescent signal is generated.
- a pulse-chase methodology allows monitoring of the dynamics and life cycle of a protein with the use of a fluorescent label.
- the pre-existing pool of tetracysteine tagged connexin-43 is labeled with FIAsH-EDT 2 , then after different times of incubation the newly expressed protein pool is labeled with ReAsH-EDT 2 (a red-emitting dye).
- ReAsH-EDT 2 a red-emitting dye.
- these label moiety can be used to photoconvert DAB (diaminobenzidine) into an osmophilic precipitate.
- the sample After osmium(VIII) oxide treatment the sample can be viewed in an electron microscope (EM) to gain ultrastructural information (Pomorski A., et al. 2010). As the FIAsH moiety cannot photoconvert DAB, the old or new pool can be visualized by electron microscopy. Labeling in the endoplasmic reticulum and Golgi apparatus is hampered by the oxidizing environment, although it is possible to reduce the cysteines in the TC-tag by the addition of tributylphosphine (TBP) or triethylphosphine (TEP).
- TBP tributylphosphine
- TEP triethylphosphine
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Abstract
La présente invention concerne des procédés de génération d'une protéine détectable dans une cellule comprenant les étapes de fourniture d'une cellule comprenant une protéine avec un tag de peptide de tétracystéine avec la séquence des acides aminés CCXXCC, de mise en contact de ladite cellule avec une nanoparticule avec un diamètre entre 2 et 200 nm, comprenant un marqueur biarsénical détectable, et de fourniture de conditions permettant l'accumulation de ladite nanoparticule par ladite cellule.
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