WO2012136492A1 - Wnt pathway antagonists - Google Patents

Wnt pathway antagonists Download PDF

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Publication number
WO2012136492A1
WO2012136492A1 PCT/EP2012/055199 EP2012055199W WO2012136492A1 WO 2012136492 A1 WO2012136492 A1 WO 2012136492A1 EP 2012055199 W EP2012055199 W EP 2012055199W WO 2012136492 A1 WO2012136492 A1 WO 2012136492A1
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mmol
group
compounds
alkyl
branched
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PCT/EP2012/055199
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Maurizio Varrone
Massimiliano Travagli
Giacomo Minetto
Lucia CESARI
Simone Galeazzi
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Siena Biotech S.P.A.
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Priority to CA2832305A priority Critical patent/CA2832305A1/en
Priority to EP12715869.9A priority patent/EP2694482A1/en
Priority to JP2014503063A priority patent/JP2014513071A/en
Priority to US14/004,292 priority patent/US20140005164A1/en
Publication of WO2012136492A1 publication Critical patent/WO2012136492A1/en

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Definitions

  • the present invention relates to novel compounds having inhibitory effect on the Wnt pathway, and to their pharmaceutical uses.
  • the Wnt gene family encodes a large class of secreted proteins related to the Intl/Wntllproto-oncogene and Drosophila wingless (“Wg”), a Drosophila Wntl homologue (Cadigan et al. (1997) Genes & Development 1 1 :3286-3305). Wnts are expressed in a variety of tissues and organs and are required for developmental processes, including segmentation in Drosophila; endoderm development in C. elegans; and establishment of limb polarity, neural crest differentiation, kidney morphogenesis, sex determination, and brain development in mammals (Parr, et al. (1994) Curr. Opinion Genetics & Devel. 4:523-528).
  • the Wnt pathway is a master regulator in animal development, both during embryogenesis and in the mature organism (Eastman, et al. (1999) Curr Opin Cell Biol 1 1 : 233-240; Peifer, et al. (2000) Science 287: 1606- 1609).
  • Wnt ligands bind to their Frizzled receptor of a family of 10 reported Frizzled (“Fz”) seven transmembrane domain receptors (Bhanot et al. (1996) Nature 382:225-230). So doing, they activate the cytoplasmic protein Dishevelled (Dvl-1, 2 and 3 in humans and mice) (Boutros, et al. (1999) Mech Dev 83 : 27-37) and phosphorylate LRP5/6.
  • Frizzled Frizzled
  • TCF T cell factor
  • LEF 1 lymphoid enhancer-binding factor-1
  • cytoplasmic ⁇ -catenin protein is constantly degraded by the action of the Axin complex, which is composed of the scaffolding protein Axin, the tumor suppressor adenomatous polyposis coli gene product (APC), casein kinase 1 (CK1), and glycogen synthase kinase 3 (GSK3).
  • Axin complex which is composed of the scaffolding protein Axin, the tumor suppressor adenomatous polyposis coli gene product (APC), casein kinase 1 (CK1), and glycogen synthase kinase 3 (GSK3).
  • Axin complex which is composed of the scaffolding protein Axin, the tumor suppressor adenomatous polyposis coli gene product (APC), casein kinase 1 (CK1), and glycogen synthase kinase 3 (GSK3).
  • CK1 and GSK3 sequentially phosphorylate the amino terminal region of ⁇ -catenin, resulting in
  • T cell factor/lymphoid enhancer factor TNF/LEF
  • any carbon-bound hydrogen atom may be substituted with a fluorine atom
  • X 2 is CR 3 or N
  • Q is Ci-C6 linear branched or cyclic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C 5 -C 10 aryl or heteroaryl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C 5 -C 6 aryl or heteroaryl group optionally substituted with halogen, Ci-C 3 alkyl, Ci-C 3 oxalkyl;
  • Ri is H; F; CI; Br; OH; CN; linear branched or cyclic Ci-C 6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy, oxazalkyloxy, azalkyloxy, dialkylamino, oxalkylamino, azalkylamino, group optionally substituted with one or more F or CN; C 5 -C 6 aryl- or heteroarylmethylammino or C 5 -C 6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C 3 alkyl, Ci-C 3 alkoxy, halogen or CN groups;
  • R 2 is H or CI
  • R 3 is H, CI or F
  • R 4 is H or CI
  • R 5 is a Ci-C 3 linear, branched or cyclic alkyl group
  • Rx is H; a linear, branched or cyclic Ci-C 3 alkyl group;
  • n may be nil, 1, 2 or 3 ;
  • X 3 is either N, O or S
  • X 2 is CR 3 or N
  • Q is Ci-C6 linear branched or cyclic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C 5 -C 10 aryl or heteroaryl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C 5 -C 6 aryl or heteroaryl group optionally substituted with halogen, Ci-C 3 alkyl, Ci-C 3 oxalkyl;
  • Ri is H; F; CI; Br; OH; CN; linear branched or cyclic C ⁇ -C 6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy, oxazalkyloxy, azalkyloxy, dialkylamino, oxalkylamino, azalkylamino, group optionally substituted with one or more F or CN; C 5 -C 6 aryl- or heteroarylmethylammino or C 5 -C 6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C 3 alkyl, Ci-C 3 alkoxy, halogen or CN groups;
  • R 2 is H or CI
  • R 3 is H, CI or F
  • R 4 is H or CI
  • R 5 is a Ci-C 3 linear, branched or cyclic alkyl group
  • Rx is H; a linear, branched or cyclic Ci-C 3 alkyl group;
  • n may be nil, 1, 2 or 3;
  • Q is Ci-C 6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C 5 -C 6 aryl or heteroaryl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C 6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C 5 -C 6 aryl or heteroaryl group optionally substituted with halogen, Ci-C 3 alkyl, Ci-C 3 oxalkyl;
  • Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a [l,2,4]oxadiazolyl, [l,3,4]thiadiazolyl, benzimidazolyl, benzothiazolyl, benzothiophenyl, benzoxazolyl, imidazolyl, 2H-indazolyl, isoxazolyl, oxazolyl, phenyl, pyrazinyl, pyrazolyl, pyridazinyl, pyridazinyl, imidazo[l,2-a]pyridine, pyridyl, pyrimidinyl, quinolyl or thiazolyl group optionally substituted with 1, 2 or 3 groups selected from the
  • Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a [l,2,4]oxadiazolyl, benzothiazolyl, benzoxazolyl, isoxazolyl, phenyl, pyrazinyl, pyrazolyl, pyridazinyl, pyridazinyl, pyridyl, pyrimidinyl, quinolyl or thiazolyl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyl
  • Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a 2-benzothiazolyl, 2- oxazolyl, 2-pyrazinyl, 2-pyridyl, 2-pyrimidinyl, 2-thiazolyl, 3-isoxazolyl,
  • X l5 X 2 , X 3 , Y, i , R 2, R 3j R 4j R 5 Rx,n,Ry are as defined under formula (I) or (I-bis) above
  • Q is Ci-C6 linear branched or cylic allkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a 2-benzothiazolyl,
  • X l5 X 2 , X 3 , Y,R 1; R 2j R 3j R 4j R 5j Rx,n,Ry are as defined defined under formula (I) or (I-bis) above
  • X 2 is CR 3 ;
  • Q is a pyrazolyl group substituted with 1 to 3 Ci-C 3 alkyl wherein one or more carbon-bound hydrogen may be substituted by fluorine;
  • R 4 is H
  • Ri R 3 and R 5 are as defined under formula (I) or (I-bis) above.
  • X 2 is CR 3 ;
  • Q is pyridazinyl
  • Ri is a linear branched or cyclic Ci-C6 oxalkyl, oxalkenyl, oxalkynyl, alkyloxy, oxalakyloxy, oxazalkyloxy, azalkyloxy group;
  • R 4 is H
  • R 3 R 5 and Rx as defined under formula (I) or (I-bis) above
  • X 2 is CR 3 ;
  • Q is 4-pyridyl
  • Ri is a linear, branched or cyclic Ci-C6 alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy oxalkylammino, group optionally substituted with F or CN;
  • R 4 is H
  • R 5 is as defined under formula (I) or (I-bis) above
  • X 2 is CR 3 ;
  • Ri is a linear, branched or cyclic C ⁇ -C 6 alkoxy or oxalkyloxy
  • R 3 is F
  • R 4 is H
  • any carbon-bound hydrogen atom may be substituted with a fluorine atom
  • X 2 is CR 3 ;
  • Q is a Ci-C 3 linear, branched or cyclic alkylcarbonyl
  • Ri is OH, linear branched or cyclic C ⁇ -C 6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkyloxy, oxalkylammino group;
  • R 4 is H
  • R 3 is H, CI or F
  • R 5 is a Ci-C 3 linear, branched or cyclic alkyl group
  • n may be nil, 1, 2 or 3 ;
  • Ri is a linear branched or cyclic Ci-C6 alkyl group
  • Ri is a Ci-C 3 linear branched or cyclic alkoxy group
  • X 2 is CR 3 ;
  • R 3 is H
  • R 4 is H
  • Q is a C 5 -C 10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C 5 -C 6 aryl or heteroaryl group optionally substituted with halogen, Ci-C 3 alkyl, Ci-C 3 oxalkyl;
  • R 5j Rx and n are as defined under formula (I) or (I-bis) above
  • i is CR 2 ; R 2 is H; X 2 is CR 3 , R 4 is H, R 5 methyl and X 3 , Y-Q,Ri R 3 R 4 Rx, n and Ry are as defined under formula (I) (I-bis) above.
  • Xi is N; X 2 is CR 3 ; R 4 is H and X 3 , Y-Q, R 1; R 2j R 3 R 4 R 5 Rx, n and Ry are as defined under formula (I) or (I-bis) above
  • Ri R 2 R 3 R 4 R 5 Rx, n,Ry are as defined under formula (I) or (I-bis) above.
  • preferred compounds are those in which R 5 is methyl
  • X 2 is CR 3 and R l5 R 4 , R 5 , R x , R y , X l5 X 3 , Q and n are as defined under formula (I)
  • Alternatively compounds of general formula 8 can be obtained starting from the amines 9 which are reacted with the appropriate nitro-fluoro- benzenes or substituted bromo-nitro-pyridine to give intermediates 10.
  • Amines 9 can be synthesized according to standard reaction procedures starting from the 4-aminomethyl-cyclohexanecarboxylic acid.
  • the nitro compounds 10 can be reduced to the corresponding dianilines 11 using standard reduction conditions and then reacted with triphosgene or CDI to afford compounds of general formula 12.
  • Intermediates 12 can then be alkylated to compounds 8 using suitable alkylating agents in presence of a base.
  • Ri is linear branched or cyclic Ci-C 6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, oxalkyloxy, oxazalkyloxy, azalkyloxy, alkylammino, dialkylammino, oxalkylammino, azalkylammino, group optionally substituted with one or more F or CN; C 5 -C 6 aryl- or heteroarylmethylammino or C 5 -C 6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C 3 alkyl, Ci-C 3 alkoxy, halogen or CN groups and R 5 , Qm R x , R y , X 3 and n are as defined under formula (I).
  • the bromo intermediates 13 can be converted to compounds of general structure 14 by methods known to those skilled in the art such as Suzuki, Buchwald and Sonogashira couplings.
  • Compounds of general formula 13 can be synthesized according to general method A described in Scheme 1.
  • Scheme 2 Method B
  • Ri is a dialkylamino, oxalkylamino or a azalkylamino and R 5 , Q, R y , R x , X 3 and n are as defined under formula (I)
  • Ri is alkyloxy, oxaalkyloxy, oxazalkyloxy, azalkyloxy group optionally substituted with one or more F or CN; or C 5 -C 6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C 3 alkyl, Ci-C 3 alkoxy, halogen or CN groups and R 5 , Q, R y , R x , X 3 , n are as defined under formula (I)
  • R 6 is a Ci-C 3 alkyl and R l5 X l5 R 4 and R 5 are as defined under formula (I)
  • Ri is a dialkylammino, oxalkylammino, azalkylammino and R 5 , Q, R y , R x , n are as defined under formula (I)
  • Intermediates 36 can be synthesized starting from 2,4-dichloro-5-nitro- pyrimidine 35 by two consecutive nucleophilic aromatic substitutions with a secondary amine (NR 7 R 8 ) and 4-aminomethyl-cyclohexanecarboxylic acid methyl ester.
  • Reduction of 36 to the dianiline 37 using standard reduction procedures followed by cyclization with triphosgene gives compounds of general formula 38 which are alkylated, following standard procedures, to 39.
  • Hydrolysis of 39 gives intermediate 40 which can be coupled with an amine in presence of an appropriate coupling agent to afford compounds of general formula 41.
  • Ri is linear branched or cyclic Ci-C 6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, group optionally substituted with one or more F or CN; C 5 -C 6 aryl- or heteroarylmethyl or C 5 -C 6 aryl- where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C 3 alkyl, Ci-C 3 alkoxy, halogen or CN groups and R 5 , Q, R y , R x , n, X 3 are as defined under formula (I).
  • Compound 42 can be synthesized starting from the commercially available 2-chloro-6-methoxy-3-nitropyridine according to general method A described in scheme 1.
  • Intermediate 43 can be obtained by reaction of 42 with chlorotrimetilsilane and then subjected to coupling with an amine in presence of an appropriate coupling agent to afford compounds of general formula 44.
  • intermediates 43 can be reacted with methanol in presence of a strong acid to give intermediates 45.
  • O-Alkylation of the pyridone moiety affords derivatives 46 which can then be hydrolysed to 47 and react with an amine to give compounds of general formula 48.
  • Scheme 7 Method G
  • Q is Ci-C 6 linear branched or cylic alkyl, oxaalkyl, dioxalkyl; a C 5 -C 10 aryl or heteroaryl group optionally substituted with 1, 2 or 3 group selected from the list of Ci-C 6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C 5 -C 6 aryl or heteroaryl group optionally substituted with halogen, Ci-C 3 alkyl, Ci-C 3 oxalkyl and R l5 X l5 X 2 , R 5 as defined under formula (I).
  • Q is a C 5 -C 10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C 6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C 5 -C 6 aryl or heteroaryl group optionally substituted with halogen, Ci-C 3 alkyl, Ci-C 3 oxalkyl and R l5 R 5 are as defined under formula (I).
  • Ri is OH; linear branched or cyclic Ci-C 6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, oxalakyloxy, oxazalkyloxy, azalkyloxy, dialkylammino, oxalkylammino, azalkylammino, group optionally substituted with one or more F or CN; C 5 -C 6 aryl- or heteroarylmethylammino or C 5 -C 6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C 3 alkyl, Ci-C 3 alkoxy, halogen or CN groups, and R 5 , Q, R x , R y , X 3 and n are as defined under formula (I).
  • Compound 59 can be obtained according to procedures described in Scheme 1.
  • Intermediate 60 can be obtained starting from the corresponding bromo intermediate 59 by methods known to those skilled in the art such as Sonogashira or Suzuki coupling.
  • Hydrolysis of 60 gives compounds of general structure 61 which can be coupled with an amine in presence of a coupling agent to afford compounds 62.
  • 59 can be transformed in the corresponding boronate 63 which can be subjected to Chan-Lam coupling to obtain compounds of general formula 64.
  • Hydrolysis of 64 gives the corresponding carboxylic acids 65 which can be coupled with an amine to give compounds 66.
  • Intermediate 63 can be oxidized to give the corresponding phenol 67 which, after hydrolisys of the ester mojety, can be reacted with an amine to afford 69.
  • compound 67 can be O-alkylated to 70.
  • Hydrolysis of 70 gives the carboxylic acid 71 which is reacted with an amine following standard procedures to afford 72.
  • Q is - a C 5 -C 10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C 6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, and R l5 R 5 are as defined under formula (I).
  • Q is a C 5 -C 10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C 6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C 5 -C 6 aryl or heteroaryl group optionally substituted with halogen, Ci-C 3 alkyl, Ci-C 3 oxalkyl and Ri and R 5 are as defined under formula (I).
  • the pharmacological activity of the exemplary compounds of the invention was first demonstrated in vitro in a Wnt reporter assay.
  • a Wnt-responsive Luciferase (TCF-Luciferase (Firefly) and a Wnt-independent (Renilla Luciferase (TA-Renilla) reporter plasmid (alone and in combination) were stably transfected in DBTRG-05MG glioblastoma cell line (ATCC) which according to the Wellcome Trust Sanger Institute Database showed no mutations involving APC, Axin and/or ⁇ -catenin genes and then considered to have an intact Wnt pathway cascade.
  • TCF-Luciferase Three copies of a 4x TCF responsive elements were cloned into the pcDNA3.1/Zeo(+) vector (Invitrogen) after deletion of the constitutive CMV promoter and the insertion of the Firefly Luciferase from Promega (phFL-TK) to measure the activity of the Wnt/ -catenin pathway. The resulting plasmid was sequenced for quality control.
  • TA-Renilla Both vectors (pCDNA3.1/Hygro(-) from Invitrogen) and phRL-TK were digested with restriction enzymes Mlul and BamHl and ligated by T4-Ligase to form the final construct, containing the full length cDNA for hRL (human codons optimized Renilla Luciferase) with in 5' the TA-minimal promoter and the backbone of the mammalian expression vector pCDNA3.1/Hygro(-) in which the constitutive CMV promoter was ablated. The construct was fully sequenced for quality control and used as internal control for cell number and toxicity.
  • Cells were grown in 20 g/ml Zeocin and 20 g/ml Zeocin plus 30 g/ml Hygromicin respectively. The cells were plated at a density of 6500 cells/well in poly-D-lysine pre-treated 96 well-plates.
  • IC50 determination 36 hours after plating cells were incubated with 8-points dilutions compound (0.6% DMSO (v/v)). Each compound was tested in triplicate in single plate. Luciferase detection was done with Dual- Luciferase Reporter Assay System (Promega). 24 hours after compound addition, media was removed and 30 ⁇ of lx lysis buffer was added to each well for 30 minutes. To each well 45 ⁇ of Dual-Glo Luciferase reagent (Promega) were added and after 1 second delay Luciferase was detected for 1 second using Mithras LB940 instrument. After Firefly luciferase quantification 45 ⁇ of Dual Stop & Glo reagent (Promega) were added to each well and Firefly Renilla was detected using the same parameters described before.
  • a secondary screen using a luciferase biochemical assay enabled the identification of compounds acting directly on the enzyme (luciferase modulators and /or quenchers) rather than true inhibitors of the Wnt pathway.
  • Luciferase assay Quantilum recombinant Luciferase (Promega) was diluted 10 6 -fold in IX Cell Culture Lysis Reagent (Promega) containing 1 mg/ml acetylated BSA. Five microliters of compound dilution (10 ⁇ final) was then mixed with 35 ⁇ of diluted Quantilum recombinant Luciferase in a 96-well white plate. To each well 20 ⁇ of LAR1 (Luciferase assay reagent from Promega) were added and luciferase was detected for 1 second with Mithras LB940 instrument. Each compound was tested in single data point on two different copy cell plates. Data were expressed as % of negative control (DMSO).
  • DMSO negative control
  • the pharmacological activity of the compounds of the invention may be tested in vitro for growth inhibition against tumour cell lines.
  • Such cell lines may, for example be representative of glioblastoma (such as DBTRG-05MG), or colorectal (for example DLD-1, HCT 116) cancer.
  • DBTRG-05MG glioblastoma
  • colorectal for example DLD-1, HCT 116 cancer.
  • the different genetic background of the cancer cell will facilitate to understand to which level of the pathway the compounds work. If the cells harbour a truncated APC allele, the destruction complex activity is affected; if cells carry a gain of function mutation in the ⁇ -catenin gene, which prevents ⁇ -catenin protein degradation, this leads to constitutive activation of downstream genes. There are many assays available for testing the growth inhibition.
  • Such assays include the so called soft agar assay (Freedman et al , Cell 3 (1974), 355-359 and Macpherson et al , Virology 23 (1964), pp. 291-294) whereby the growth inhibition does not depend from adhesion of the cells to the plastic material of the well where the assay takes place.
  • DBTRG cells were seeded into a 24-well format in the presence of 25 carrier alone or compound (0.6% DMSO (v/v)). Each well is composed of two agar layers: the bottom layer consists of 0.6% Agar while the top has 0.35% Agar plus cells and compound. Cells (2500 per well) were incubated with 7 34 points dilution compound the day of the plating and the colonies were scored 3 weeks later after o/n staining with MTT solution. Imaging and counting of the colonies was done with the GelCountTM instrument (Oxford Optronix, UK). For IC50 determination the data were expressed as% of control, values were calculated using XLFit version 4.2, with a four parameters sigmoid 5 function (XLFit model 205).
  • the pharmacological activity of the compounds of the invention may further be tested in vivo in animal models mimicking the disease. These animal models may include those where the cancerous cells are implanted subcutaneously or orthotopically.
  • Compounds under formula I are formulated preferably in admixture with a pharmaceutically acceptable carrier, excipient or the like.
  • a pharmaceutically acceptable carrier excipient or the like.
  • the pro-drug form of the compounds are preferred.
  • ester and ether derivatives as well as various salt forms of the present compounds.
  • One of ordinary skill in the art will recognize how to readily modify the present compounds to pro- drug forms to facilitate delivery of active compounds to a targeted site within the host organism or patient. The routineer also will take advantage of favourable pharmacokinetic parameters of the pro-drug forms, where applicable, in delivering the present compounds to a targeted site within the host organism or patient to maximize the intended effect of the compound.
  • composition or formulation to be administered will, in any event, contain a quantity of the active compound in an amount effective to alleviate the symptoms of the subject being treated.
  • a daily dose is from about 0.05 mg/kg to about 100 mg/kg of body weight.
  • the amount of active compound administered will, of course, be dependent on the subject and disease state being treated, the severity of the affliction, the manner and schedule of administration and the judgment of the prescribing physician.
  • a prophylactically or preventive effective amount of the compositions according to the present invention falls within the same concentration range as set forth above for therapeutically effective amounts and is usually the same as a therapeutically effective amount.
  • one or more compounds of formula (I) are administered in combination with one or more other pharmaceutically active agents.
  • the phrase "in combination”, as used herein, refers to agents that are simultaneously administered to a subject. It will be appreciated that two or more agents are considered to be administered "in combination" whenever a subject is simultaneously exposed to both (or more) of the agents. Each of the two or more agents may be administered according to a different schedule; it is not required that individual doses of different agents be administered at the same time, or in the same composition.
  • Analytical UPLC -MS were run using a Acquity Waters UPLC with equipped with a Waters SQD (ES ionization) and Waters Acquity PDA detector, using a column BEH C18 1,7 ⁇ , 2, 1 x 5.00. Temperature: 40°C.UV Detection at 215 nm and 254. ESI+ detection in the 80-1000 m/z range Gradient 0.1%ammonia/water and acetonitrile with a gradient 85/15 to 5/95 flow: 0.8 ml/min over 3min.
  • Analytical UPLC -MS were run using a Acquity Waters UPLC with equipped with a Waters SQD (ES ionization) and Waters Acquity PDA detector, using a column BEH C18 1,7 ⁇ , 2, 1 x 5.00. Temperature: 40°C. UV Detection at 215 nm and 254. ESI+ detection in the 80- 1000 m/z range. Gradient 0.1% formic acid/water and 0.1% formic acid/ CH3CN with a gradient 95/5 to 5/95 flow: 0.6 ml/min over 3 minutes.
  • Preparative HPLC was run using a Waters 2767 system with a binary gradient Module Waters 2525 pump and coupled to a Waters Micromass ZQ25 (ES) or Waters 2487 DAD, using a Gemini NX C 18 5 ⁇ , 100 x 21.2. Gradient 0.1% formic acid/water and 0.1% formic acid/methanol flow: 40 ml/min.
  • Preparative HPLC was run using a Waters 2767 system with a binary gradient Module Waters 2525 pump and coupled to a Waters Micromass ZQ 25 (ES) or Waters 2487 DAD, using a X-Bridge C 18 5 ⁇ 19 x 150. Gradient 0.1% ammonia/water and methanol flow: 17 ml/min.
  • Preparative HPLC was run using a Waters 2767 system with a binary gradient Module Waters 2525 pump and coupled to a Waters MS3100 SQ or Waters 2487 DAD, using a X-Bridge C18 5 ⁇ 19 x 150. Gradient 0.1% formic acid/water and 0.1%formic acid/ methanol flow: 17 ml/min.
  • Triphosgene (4. 10 g, 13.81 mmol) was added portionwise to a stirred solution of tra «5-4-[(2-Amino-4-fluoro-5-methoxy-phenylamino)-methyl]- cyclohexanecarboxylic acid methyl ester (4.28 g, 13.81 mmol) and TEA (1.92 mL, 13.81 mmol) in THF (40 mL) cooled to 0°C. The reaction mixture was left to warm to room temperature and it was left overnight. H 2 O (50 mL) was slowly added to the reaction mixture then THF was removed under reduced pressure. The formed precipitate was filtered, washed with H 2 O (3 X 20 mL) and dried to give 4.51 g of the titled compound (yield 97%).
  • CDI 38. 13 g, 235. 10 mmol
  • trans-A- [(5-Methoxy-2-amino-phenylamino)-methyl]-cyclohexanecarboxylic acid methyl ester 27.46 g, 94.04 mmol
  • AcOEt 300 mL
  • H 2 O 500 mL
  • a precipitate formed and it was filtered, washed with AcOEt (3*30 mL) and discarded.
  • the organic washes were collected to the mother liquors.
  • the organic layer was separated and the acqueous phase was back extracted with AcOEt (3 * 100 mL).
  • CDI (11.7 g, 72.1 mmol) was added to a dry THF (500 ml) solution of tra «5-4- ⁇ [2-amino-5-(tetrahydro-2H-pyran-2- yloxy)phenylamino]methyl ⁇ cyclohexane carboxylic acid methyl ester (13.1 g, 36.1 mmol) in a 1L four necked round bottom flask.
  • the reaction mixture was stirred at room temperature.
  • the solvent was evaporated under reduced pressure and the residue was taken up with DCM (500 ml) then washed with water (2x500 ml) and brine (2x500 ml).
  • the organic layer was dried over Na 2 SO 4 , filtered and evaporated under reduced pressure to give 14.5 g (yield quantitative) of crude intermediate as a brown solid. This was used in the next step with no further purification.
  • the titled compoud was purified by reverse phase chromatography using H 2 O:CH 3 CN as eluents with a gradient 05 :95 to 95 :05 and with 0.1% formic acid as phase modifier.
  • the titled compound was isolated as a pale yellow solid (242 mg, yield 38%).
  • the solvent was removed under reduced pressure and the crude was dissolved in 20 ml of DCM and the solution was washed with H 2 O (50 ml), Na 2 CO 3 (0.4 M, 50 ml) and then with IN HC1 (50 ml). The organic phase was dried over Na 2 SO 4 , filtered and the solvent removed.
  • the titled compound was purified by reverse phase chromatography using H 2 O:CH 3 CN as eluents with a gradient 05:95 to 95:05 and with 0.1% formic acid as phase modifier. The titled compound was isolated as a powder (1.40 g, yield 82%).
  • CDI (154 mg, 0.95 mmol), was added to a stirred suspension of isonicotinic acid (117 mg, 0.95 mmol) in anhydrous THF (2 ml). The mixture was stirred for 1 h until complete dissolution.
  • LiHMDS (1.04 ml, 1.04 mmol) was added to a solution of 3- ⁇ trans 4-Acetyl-cyclohexylmethyl)-5-methoxy-l-methyl-l,3-dihydro-benzoimidazol- 2-one (300 mg, 0.95 mmol) in anhydrous THF (2 mL) at -78°C under nitrogen. The mixture was left to react for 30 minutes.
  • Ethyliodide (36.5 ⁇ ⁇ , 0.45 mmol) was added to a suspension of trans -4- (6-Hy droxy-3 -methyl-2-oxo-2, 3 -dihydro-benzoimidazol- 1 -ylmethyl)- cyclohexanecarboxylic acid methyl ester ( 120 mg, 0.38 mmol) and K 2 CO 3 (104 mg, 0.75 mmol) in 2-butanone (2 ml) and the mixture was left stirring at 50°C overnight. Ethyl iodide was added again (62 ⁇ , 0.76 mmol) and the mixture was heated at 60°C 24 hours.
  • Oxalyl chloride (0.38 Ml, 4.53 mmol) and DMF (0.03 Ml) were added to a stirred solution of tra «s-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl)-cyclohexanecarboxylic acid (1.2 g, 3.77 mmol) in dry DCM (30 Ml).
  • the resulting solution was stirred 16 h at r.t.
  • the solvent was removed under reduced pressure.
  • the crude containing was dissolved in THF/CH 3 CN (8 Ml, 1 : 1 v/v) and the solution cooled to 0°C.
  • Trimethylsilildiazomethane (2.0 M solution in Et 2 O, 5.7 Ml, 1 1.34 mmol) was added dropwise and the resulting mixture was allowed to warm to r.t. and stirred for 3 h. The solvent was removed under reduced pressure. Dioxane (7 Ml) was added to the crude and then HBr (48% solution in water) was slowly added. The mixture was stirred 1 h at r.t. Iced water was added and the mixture was extracted with DCM (5* 10 Ml). The organic layers were collected, dried over Na 2 SO 4 filtered and concentrated. The residue was purified by silica column (Cyclohexane/AcOEt 95:05 to 05:95) to afford 920 mg of the titled compound (yield 62%).
  • Trifluoro acetic acid (8 ml) was added to a solution of 4-[tra «5-4-(6- Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarbonyl]-piperazine-l-carboxylic acid tert-butyl ester (2.29 g, 4.70 mmol) in DCM (20 ml). The solution was stirred at room temperature overnight and then the reaction mixture was concentrated under reduced pressure. DCM (10 Ml) was added to the crude and the organic solution was washed with NaOH IN (7 Ml). The organic layer was concentrated to afford 1.82 g of the titled compound as a white foam (yield quantitative).
  • Toluene (2 Ml) was added to a mixture of Pd(Oac) 2 (6.0 mg, 0.03 mol) and BINAP (16 mg, 0.03 mmol).
  • the resulting mixture was transfer in a vial containing Cs 2 CO 3 (252 mg, 0.78 mmol), tra «s-4-(6-Methoxy-3-methyl-2- oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid piperazin-l-yl ester (100 mg, 0.26 mmol) and 5-bromopyrimidine (53 mg, 0.34 mmol).
  • the resulting mixture was heated under stirring at 90°C 6 hours.
  • Examples 1- 188 each of which constitutes a separate embodiment of this invention, display an IC 50 value in the above described reporter assay falling between 35 nM and 23 ⁇ . In the renilla read out, Examples 1- 188 showed a negligible effect. Moreover, selected representative compounds were assessed not to be inhibitors of the luciferase enzyme. Examples 185, 186, 153, 22, 61, 115, 72, 152, 121, 106, 147, 182, 161, 68, 92, 71, 29, 14 and 1 display an IC50 value ranging from 32 nM to 2.9 ⁇ in the soft agar assay.

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Abstract

The present invention relates to novel compounds of formula (I) : as herein described and pharmaceutical compositions thereof. The compounds of formula (I) have inhibitory effect on the Wnt pathway and are therefore useful in the preparation of a medicament, in particular for the treatment of cancer.

Description

WNT PATHWAY ANTAGONISTS
The present invention relates to novel compounds having inhibitory effect on the Wnt pathway, and to their pharmaceutical uses.
Background to the invention
The Wnt gene family encodes a large class of secreted proteins related to the Intl/Wntllproto-oncogene and Drosophila wingless ("Wg"), a Drosophila Wntl homologue (Cadigan et al. (1997) Genes & Development 1 1 :3286-3305). Wnts are expressed in a variety of tissues and organs and are required for developmental processes, including segmentation in Drosophila; endoderm development in C. elegans; and establishment of limb polarity, neural crest differentiation, kidney morphogenesis, sex determination, and brain development in mammals (Parr, et al. (1994) Curr. Opinion Genetics & Devel. 4:523-528). The Wnt pathway is a master regulator in animal development, both during embryogenesis and in the mature organism (Eastman, et al. (1999) Curr Opin Cell Biol 1 1 : 233-240; Peifer, et al. (2000) Science 287: 1606- 1609). The variety of biological processes to which they take part during embryonic development and adult homeostasis is paralleled by the diversification within genomes into Wnt orthologues ( 19 identified Wnts in humans) and by the capacity to activate at least three intracellular signalling pathways (Moon et al , 2002; Nelson and Nusse, 2004; Seto and Bellen, 2004), the calcium-mediated and planar polarity pathways (Strutt,2003 ; Veeman et al , 2003 ; Kuhl, 2004) and the canonical Wnt -β-catenin pathway. In the canonical Wnt pathway, Wnt ligands bind to their Frizzled receptor of a family of 10 reported Frizzled ("Fz") seven transmembrane domain receptors (Bhanot et al. (1996) Nature 382:225-230). So doing, they activate the cytoplasmic protein Dishevelled (Dvl-1, 2 and 3 in humans and mice) (Boutros, et al. (1999) Mech Dev 83 : 27-37) and phosphorylate LRP5/6. A signal is thereby generated which prevents the phosphorylation and degradation of Armadillol/ β-catenin, in turn leading to an increase in cytoplasmic β-catenin (Perrimon (1994) Cell 76:781-784). This β-catenin translocates to the nucleus where it binds TCF (T cell factor) transcription factors (also known as lymphoid enhancer-binding factor-1 (LEF 1)), serving as a coactivator of TCF/LEF-induced transcription (Bienz, et al (2000) Cell 103 : 3 1 1-320; Polakis, et al (2000) and finally leading to the increased gene expression of Wnt target genes. In the absence of Wnt, cytoplasmic β-catenin protein is constantly degraded by the action of the Axin complex, which is composed of the scaffolding protein Axin, the tumor suppressor adenomatous polyposis coli gene product (APC), casein kinase 1 (CK1), and glycogen synthase kinase 3 (GSK3). CK1 and GSK3 sequentially phosphorylate the amino terminal region of β-catenin, resulting in β-catenin recognition by β-Trcp, an E3 ubiquitin ligase subunit, and subsequent β-catenin ubiquitination and proteasomal degradation (He et al , 2004). This continual elimination of β-catenin prevents β-catenin from reaching the nucleus, and Wnt target genes are thereby repressed by the DNA-bound T cell factor/lymphoid enhancer factor (TCF/LEF) family of proteins.
An increasing number of studies suggest how Wnt signalling related disorders can be initiated not only by mutations involving APC or Axin proteins (e.g., colorectal cancer), responsible for β-catenin degradation but also by alternative mechanisms. Hyperactivating mutations at the LRP5 co-receptor level are associated with high bone-density familial autosomal dominant syndrome (Boyden et al , N Engl J Med. 2002; 346(20): 15 13-21). Autocrine Wnt signaling mediated by specific Wnt ligands was in fact linked to lung (Akiri et al Oncogene 2009 28(21):2163-72), breast (Schlange et al , Breast Cancer Res. 2007;9(5):R63 and Matsuda et al , Breast Cancer Res. 2009; 1 1(3):R32) and pancreatic (Nawroth et al , PLoS One. 2007 Apr 25 ;2(4):e392) tumors, but also malignant melanoma cells spreading (O'Connell et al , J Biol Chem. 2009 Aug 20., Epub ahead of print). Wnt signals form a class of paracrine growth factors act to influence multiple myeloma cell growth (Derksen et al , PNAS. 2004; 101( 16):6122-7). The metastatic process, an ominous feature of most malignant tumors represents an additional area of intervention for Wnt inhibitors (Nguyen et al , Cell. 2009; 138(l):51-62) or tumor recurrence in glioblastoma patients (Sakarlassen et al , PNAS 2006, 103 (44) 16466) where different pathways seem to rule primary versus recurrent tumors. Moreover, there is strong evidence of the Wnt pathway involvement in cancers such as gastric cancer (Taniguchi et al, Oncogene. 2005 Nov 24;24(53):7946-52), medulloblastoma (Vibhakar et al , Neuro Oncol. 2007 Apr;9(2): 135-44), glioblastoma (Pu et al , Cancer Gene Ther. 2009 (4):351-61), hepatocellular carcinomas (Colnot et al , Proc Natl Acad Sci U S A. 2004 Dec 7; 101(49): 17216-2), basal cell carcinoma (Yang et al , Nat Genet. 2008 Sep;40(9): 1 130-5), leukaemia (Staal, Blood, 109, 12, 5073-5074, 2007; Tickenbrock et al , Int. J. Oncol, 33, 1215- 1221, 2008; Zhao, Cancer Cell, 12, 528-541,2007), Wilm's tumours (Rivera et al , Science, 3 15,642-645, 2007 and Major et al , Science, 3 16, 1043- 1046, 2007) and Familial Adenomatous Polyposis (Kinzler et al , Science 253,661-665, 1991 and Nishisho et al , Science 253,665-669, 1991). There is also evidence that the inhibition of the Wnt pathway benefits pulmonary and renal fibrosis patients (Konigshoff et al , PLoS One 3(5):e2142, 2008 and Henderson et al , PNAS, 107 (32), 14309- 143 14, 2010; Pulkkinen K. et al. Organogenesis 2008,55-59, Brack et al., Science 2007, 3 17(5839), 807- 10) and that Wnt inhibition can be used to treat diseases or conditions that involve myelin damage, such as ischemic neural injury and multiple sclerosis (Casaccia P. Nat. Neurosci. 201 1, 14, 945-947; Fancy, S.P.J, et al Nat. Neurosci. 201 1, 14, 1009- 1016; Fancy, S.P.J, et al Genes Dev. 2009, 23, 1571- 1585). DETAILED DESCRIPTION OF THE INVENTION
In one embodiment, there is provided compounds of formula I below
Figure imgf000005_0001
(I)
wherein, as valence and stability permit;
any carbon-bound hydrogen atom may be substituted with a fluorine atom;
Figure imgf000005_0002
X2 is CR3 or N;
-Y-Q is
Figure imgf000005_0003
Figure imgf000005_0004
Q is Ci-C6 linear branched or cyclic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
Ri is H; F; CI; Br; OH; CN; linear branched or cyclic Ci-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy, oxazalkyloxy, azalkyloxy, dialkylamino, oxalkylamino, azalkylamino, group optionally substituted with one or more F or CN; C5-C6 aryl- or heteroarylmethylammino or C5-C6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups;
R2 is H or CI;
R3 is H, CI or F;
R4 is H or CI;
R5 is a Ci-C3 linear, branched or cyclic alkyl group;
Rx is H; a linear, branched or cyclic Ci-C3 alkyl group;
n may be nil, 1, 2 or 3 ;
Ry is- independently from one another when n=2 or more- F; a linear, branched or cyclic Ci-C3 alkyl group; or Ry, together with the carbon atom to which it is attached, forms an oxo group.
X3 is either N, O or S;
tautomers, optical isomers and pharmaceutically acceptable salts thereof;
with the exception of
Figure imgf000007_0001
Figure imgf000008_0001
(I-bis) Wherein, as valence and stability permit; any carbon-bound hydrogen atom may be substituted with a fluorine atom;
Figure imgf000009_0001
X2 is CR3 or N;
-Y-Q is
Figure imgf000009_0002
Figure imgf000009_0003
Q is Ci-C6 linear branched or cyclic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
Ri is H; F; CI; Br; OH; CN; linear branched or cyclic C\-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy, oxazalkyloxy, azalkyloxy, dialkylamino, oxalkylamino, azalkylamino, group optionally substituted with one or more F or CN; C5-C6 aryl- or heteroarylmethylammino or C5-C6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups;
R2 is H or CI;
R3 is H, CI or F;
R4 is H or CI;
R5 is a Ci-C3 linear, branched or cyclic alkyl group;
Rx is H; a linear, branched or cyclic Ci-C3 alkyl group;
n may be nil, 1, 2 or 3;
Ry is- independently from one another when n=2 or more- F; a linear, branched or cyclic Ci-C3 alkyl group; or Ry, together with the carbon atom to which it is attached, forms an oxo group;
tautomers, optical isomers and pharmaceutically acceptable salts thereof In one embodiment,
Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C5-C6 aryl or heteroaryl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
and Xl5 X2, X3, Y,R1; R2j R3jR4jR5 Rx,n,Ry are as defined under formula (I) or (I-bis) above
In another embodiment,
Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a [l,2,4]oxadiazolyl, [l,3,4]thiadiazolyl, benzimidazolyl, benzothiazolyl, benzothiophenyl, benzoxazolyl, imidazolyl, 2H-indazolyl, isoxazolyl, oxazolyl, phenyl, pyrazinyl, pyrazolyl, pyridazinyl, pyridazinyl, imidazo[l,2-a]pyridine, pyridyl, pyrimidinyl, quinolyl or thiazolyl group optionally substituted with 1, 2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a [l,3,4]oxadiazolyl, phenyl, furanyl or pyridyl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
and Xl5 X2, X3, Y,Ri, R2, R3 jR4 R5 Rx,n,Ry a re as defined under formula
(I) or (I-bis) above
In another embodiment,
Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a [l,2,4]oxadiazolyl, benzothiazolyl, benzoxazolyl, isoxazolyl, phenyl, pyrazinyl, pyrazolyl, pyridazinyl, pyridazinyl, pyridyl, pyrimidinyl, quinolyl or thiazolyl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a [l,3,4]oxadiazolyl, group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
and Xl5 X2, X3, Y,R1; R2j R3jR4jR5 Rx,n,Ry are as defined defined under formula (I) or (I-bis)
In another embodiment
Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmmmocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a 2-benzothiazolyl, 2- oxazolyl, 2-pyrazinyl, 2-pyridyl, 2-pyrimidinyl, 2-thiazolyl, 3-isoxazolyl,
3- pyrazolyl, 3 -pyridazinyl, 3-pyridyl, 4-pyrazolyl, 4-pyridazinyl, 4-pyridyl,
4- pyrimidinyl, 4-thiazolyl, 5-[ l,2,4]oxadiazolyl, 5-[ l,3,4]thiadiazolyl,
5- benzimidazolyl, 5-benzothiophenyl, 5-benzoxazolyl, 5-imidazolyl, 5-isoxazolyl, 5-pyrazolyl, 5-pyrimidinyl, 5-quinolyl, 6-benzothiazolyl,
8-quinolyl, 4-2H-indazolyl, phenyl or 3-imidazo[ l,2-a]pyridine, group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a [ l,3,4]oxadiazolyl, group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
and Xl5 X2, X3, Y, i, R2, R3jR4jR5 Rx,n,Ry are as defined under formula (I) or (I-bis) above
In another embodiment,
Q is Ci-C6 linear branched or cylic allkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a 2-benzothiazolyl,
2- pyrazinyl, 2-pyridyl, 2-pyrimidinyl, 2-thiazolyl, 3-isoxazolyl, 3-pyrazolyl,
3 - pyridazinyl, 3-pyridyl, 4-pyrazolyl, 4-pyridazinyl, 4-pyridyl, 4-pyrimidinyl, 4-thiazolyl, 5-[ l,2,4]oxadiazolyl, 5-benzoxazolyl, 5-isoxazolyl, 5-pyrazolyl,
5-pyrimidinyl, 5-quinolyl or phenyl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a [ l,3,4]oxadiazolyl, group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
and Xl5 X2, X3, Y,R1; R2j R3jR4jR5jRx,n,Ry are as defined defined under formula (I) or (I-bis) above
In another embodiment,
Figure imgf000013_0001
X2 is CR3;
-Y-Q is
Figure imgf000013_0002
Q is a pyrazolyl group substituted with 1 to 3 Ci-C3 alkyl wherein one or more carbon-bound hydrogen may be substituted by fluorine;
R4 is H;
and Ri R3 and R5 are as defined under formula (I) or (I-bis) above.
In another embodiment, there is provided a compound selected from the list of
Figure imgf000013_0003
Figure imgf000013_0004
Figure imgf000014_0001
In another embodiment,
Figure imgf000014_0002
X2 is CR3 ;
-Q-Y is;
Figure imgf000014_0003
Q is pyridazinyl;
Ri is a linear branched or cyclic Ci-C6 oxalkyl, oxalkenyl, oxalkynyl, alkyloxy, oxalakyloxy, oxazalkyloxy, azalkyloxy group;
R4 is H;
and R3 R5 and Rx as defined under formula (I) or (I-bis) above
In another embodiment, there is provided a compound selected from the list of
Figure imgf000015_0001
Figure imgf000015_0002
Figure imgf000015_0003
In another embodiment,
Figure imgf000015_0004
X2 is CR3 ;
-Q-Y is
Figure imgf000015_0005
Q is 4-pyridyl;
Ri is a linear, branched or cyclic Ci-C6 alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy oxalkylammino, group optionally substituted with F or CN;
R4 is H;
and R5 is as defined under formula (I) or (I-bis) above
In another embodiment, there is provided a compound selected from the list of
Figure imgf000016_0001
10
Figure imgf000017_0001
Figure imgf000017_0002
In another embodiment,
Figure imgf000017_0003
X2 is CR3 ;
Ri is a linear, branched or cyclic C\-C6 alkoxy or oxalkyloxy;
R3 is F;
R4 is H;
and X3, Y-Q,R5 Rx, n and Ry are as defined under formula formula (I) or (I-bis) above
In another embodiment, there is provided a compound selected from the list of
Figure imgf000017_0004

Figure imgf000018_0001
Figure imgf000019_0001
Figure imgf000019_0002
In another embodiment, there is provided compounds of formula (I-ter) below,
Figure imgf000019_0003
(I-ter)
Wherein, as valence and stability permit;
any carbon-bound hydrogen atom may be substituted with a fluorine atom;
Figure imgf000019_0004
X2 is CR3 ;
Q is a Ci-C3 linear, branched or cyclic alkylcarbonyl; Ri is OH, linear branched or cyclic C\-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkyloxy, oxalkylammino group;
R4 is H;
R3 is H, CI or F;
R5 is a Ci-C3 linear, branched or cyclic alkyl group;
n may be nil, 1, 2 or 3 ;
Ry is- independently from one another when n=2 or more- F; a linear, branched or cyclic Ci-C3 alkyl group; or Ry, together with the carbon atom to which it is attached, forms an oxo group;
tautomers, optical isomers and pharmaceutically acceptable salts thereof
In an embodiment of compounds falling under formula (I-ter)above,
Ri is a linear branched or cyclic Ci-C6 alkyl group;
In another embodiment, there is provided a compound selected from the list of
Figure imgf000020_0001
Figure imgf000020_0002
Figure imgf000021_0001
In another embodiment,
Figure imgf000021_0002
Ri is a Ci-C3 linear branched or cyclic alkoxy group
X2 is CR3 ;
R3 is H;
R4 is H;
-Q-Y is
Figure imgf000021_0003
Q is a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
and R5jRx and n are as defined under formula (I) or (I-bis) above
In another embodiment, there is provided a compound selected from the list of
Figure imgf000021_0004
Figure imgf000022_0001
Figure imgf000023_0001
Figure imgf000024_0001
Figure imgf000025_0001
Figure imgf000025_0002
Figure imgf000025_0003
Figure imgf000025_0004
In another embodiment i is CR2; R2 is H; X2 is CR3, R4 is H, R5 methyl and X3, Y-Q,Ri R3 R4 Rx, n and Ry are as defined under formula (I) (I-bis) above.
In another embodiment, Xi is N; X2 is CR3; R4 is H and X3, Y-Q, R1; R2j R3 R4 R5 Rx, n and Ry are as defined under formula (I) or (I-bis) above
In another embodiment Xi is N; X2 is CR3; R4 is H; -Y-Q is
Figure imgf000026_0001
and X3, Ri R2 R3 R4 R5 Rx, n,Ry are as defined under formula (I) (I-bis) above
In another embodiment Xi is N; X2 is CR3; R4 is H; -Y-Q is
Figure imgf000026_0002
and X3, Ri R2 R3 R4 R5 Rx, n,Ry are as defined under formula (I) or (I-bis) above.
Within any embodiment, preferred compounds are those in which R5 is methyl
All embodiments may be combined
COMPOUNDS SYNTHESIS
Depending on the exact nature of the compound, compounds of the invention may be obtained under general schemes 1-13.
Compounds of formula la can be prepared according to Method A reported in Scheme 1.
Figure imgf000026_0003
wherein -Y-Q is
Figure imgf000027_0001
X2 is CR3 and Rl5 R4, R5, Rx, Ry, Xl5 X3, Q and n are as defined under formula (I)
Reaction of 4-aminomethyl-cyclohexanecarboxylic acid methyl ester with the appropriate nitro-fluoro-benzenes or properly substituted halo -nitro-pyridine gives compounds of general formula 1 which can be reduced to the dianilines of general formula 2 using standard reaction procedures. Substituted nitro-fluoro-benzenes and nitro bromo pyridines are commercially available or have been described in literature or can be synthesized using standard procedures. 4-aminomethylcyclohexane carboxylic methyl ester can be synthesized from the corresponding acid in analogy to the reported methods (see for example WO07064273). Cyclization of 2 with CDI (1, 1-carbonyldiimidazole), or triphosgene (Bis(trichloromethyl) carbonate) affords compounds of general formula 3. Such compounds can be hydrolysed to the corresponding carboxylic acid 4 and coupled with an amine in presence of an appropriate coupling agent to give compounds of general formula 5. Alkylation will give compounds of general formula 8. In addition compounds of general formula 3 can be alkylated to intermediates of general formula 6. Hydrolysis of 6 gives the corresponding carboxylic acids 7 which are coupled with an amine in presence of an appropriate coupling agent to afford compounds 8. Alternatively compounds of general formula 8 can be obtained starting from the amines 9 which are reacted with the appropriate nitro-fluoro- benzenes or substituted bromo-nitro-pyridine to give intermediates 10. Amines 9 can be synthesized according to standard reaction procedures starting from the 4-aminomethyl-cyclohexanecarboxylic acid. The nitro compounds 10 can be reduced to the corresponding dianilines 11 using standard reduction conditions and then reacted with triphosgene or CDI to afford compounds of general formula 12. Intermediates 12 can then be alkylated to compounds 8 using suitable alkylating agents in presence of a base.
Scheme 1 : Method A
Figure imgf000028_0001
A4
Figure imgf000028_0002
Compounds of formula lb can be prepared according to Method B reported in Scheme 2.
Figure imgf000029_0001
and Ri is linear branched or cyclic Ci-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, oxalkyloxy, oxazalkyloxy, azalkyloxy, alkylammino, dialkylammino, oxalkylammino, azalkylammino, group optionally substituted with one or more F or CN; C5-C6 aryl- or heteroarylmethylammino or C5-C6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups and R5, Qm Rx, Ry, X3 and n are as defined under formula (I).
The bromo intermediates 13 can be converted to compounds of general structure 14 by methods known to those skilled in the art such as Suzuki, Buchwald and Sonogashira couplings. Compounds of general formula 13 can be synthesized according to general method A described in Scheme 1. Scheme 2: Method B
Figure imgf000030_0001
Compounds of formula Ic can be prepared according to Method C reported in Scheme 3.
Figure imgf000030_0002
Wherein -Y-Q is
Figure imgf000030_0003
Figure imgf000030_0004
and Ri is a dialkylamino, oxalkylamino or a azalkylamino and R5, Q, Ry, Rx, X3 and n are as defined under formula (I)
Reaction of 4-aminomethyl-cyclohexanecarboxylic acid methyl ester with the commercially available 2,6-dibromo-3-nitropyridine gives compound 15 which is reacted with an amine according to standard procedures to afford the intermediates of general formula 16. Reduction of 16 using standard methods affords the dianiline 17 which is cyclised with CDI or triphosgene to compounds 18. Intermediates 18 are alkylated, following standard procedures, to 19. Hydrolysis of 19 gives intermediate 20 which can be coupled with an amine in presence of an appropriate coupling agent to afford compounds of general formula 21.
Figure imgf000031_0001
Compounds of formula Id can be prepared according to Method D reported in Scheme 4.
Figure imgf000031_0002
Wherein -Y-Q is
Figure imgf000032_0001
Figure imgf000032_0002
and Ri is alkyloxy, oxaalkyloxy, oxazalkyloxy, azalkyloxy group optionally substituted with one or more F or CN; or C5-C6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups and R5, Q, Ry, Rx, X3, n are as defined under formula (I)
3-fluoro-4-nitro-phenol, O-protected with a suitable protecting group (Pg) such as THP, is reacted with 4-aminomethyl-cyclohexanecarboxylic acid methyl ester to afford compound 23 which can then be reduced to the dianiline 24 using standard reduction procedures. Cyclization of 24 with CDI or triphogene gives the intermediate 25 which can be alkylated to 26 using standard alkylation procedures. Hydrolysis of 26 to the corresponding carboxylic acid 27 and subsequent O-deprotection affords compound 28 which is converted into its methyl ester derivative 29 using standard conditions. Alkylation of the phenol group of 29 with appropriate alkylating agents in presence of a base such as NaOH or K2CO3 gives intermediates of general formula 30. When R1=OCHF2, the alkylation can be done using procedures described in the literature (see for example US573 1477). Intermediate 30 is then hydrolyzed to the corresponding carboxylic acids 31 and coupled with an amine in presence of an appropriate coupling agent to afford compounds of general formula 32. Scheme 4: Method D
Figure imgf000033_0001
Compounds of formula Ie can be prepared according to Method E reported in scheme 5.
Figure imgf000033_0002
Wherein R6 is a Ci-C3 alkyl and Rl5 Xl5 R4 and R5 are as defined under formula (I)
Compounds of general formula 34 can be obtained by alkylation of intermediates 33, with the appropriate bromo alkyl ketone. Intemediates 33 can be obtained according method A reported in Scheme 1. Scheme 5: Method E
Figure imgf000034_0001
33
Compounds of formula If can be prepared according to Method F reported in scheme 6.
Figure imgf000034_0002
Wherein -Y-Q is
Figure imgf000034_0003
Figure imgf000034_0004
and Ri is a dialkylammino, oxalkylammino, azalkylammino and R5, Q, Ry, Rx, n are as defined under formula (I)
Intermediates 36 can be synthesized starting from 2,4-dichloro-5-nitro- pyrimidine 35 by two consecutive nucleophilic aromatic substitutions with a secondary amine (NR7R8) and 4-aminomethyl-cyclohexanecarboxylic acid methyl ester. Reduction of 36 to the dianiline 37 using standard reduction procedures followed by cyclization with triphosgene gives compounds of general formula 38 which are alkylated, following standard procedures, to 39. Hydrolysis of 39 gives intermediate 40 which can be coupled with an amine in presence of an appropriate coupling agent to afford compounds of general formula 41.
Scheme 6: Method F
Figure imgf000035_0001
Compounds of formula Ig and Ih can be prepared according to Method G reported in scheme 7.
Figure imgf000035_0002
wherein Y-Q is
Figure imgf000036_0001
Figure imgf000036_0002
and Ri is linear branched or cyclic Ci-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, group optionally substituted with one or more F or CN; C5-C6 aryl- or heteroarylmethyl or C5-C6 aryl- where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups and R5, Q, Ry, Rx, n, X3 are as defined under formula (I).
Compound 42 can be synthesized starting from the commercially available 2-chloro-6-methoxy-3-nitropyridine according to general method A described in scheme 1. Intermediate 43 can be obtained by reaction of 42 with chlorotrimetilsilane and then subjected to coupling with an amine in presence of an appropriate coupling agent to afford compounds of general formula 44. Alternatively intermediates 43 can be reacted with methanol in presence of a strong acid to give intermediates 45. O-Alkylation of the pyridone moiety, affords derivatives 46 which can then be hydrolysed to 47 and react with an amine to give compounds of general formula 48. Scheme 7: Method G
Figure imgf000037_0001
Compounds of formula Ii can be prepared according to Method H reported in scheme 8.
Figure imgf000037_0002
Wherein Q is Ci-C6 linear branched or cylic alkyl, oxaalkyl, dioxalkyl; a C5-C10 aryl or heteroaryl group optionally substituted with 1, 2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl and Rl5 Xl5 X2, R5 as defined under formula (I).
Coupling of compounds with general formula 49 with carboxylic acids hydrazides affords diacylhydrazides 52 which can be cyclization to give 53. Alternatively 49 is reacted with hydrazinecarboxylic acid tert-butyl ester to give intermediates 50 which, after deprotection to 51, is coupled with a carboxylic acid to give compounds of formula 52. Ring closure of 52 using standard literature procedures gave compounds of general formula 53. Compounds of general formula 49 can be synthesized according to the previously described method A reported in Scheme 1.
Scheme 8: Method H
Figure imgf000038_0001
Compounds of formula II can be prepared according to Method I reported in scheme 9.
Figure imgf000038_0002
(II) Wherein Q is a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl and Rl5 R5 are as defined under formula (I).
Coupling of 49 with O-methyl-hydroxylamine gives the Weinreb amide intermediates 55 which are converted to ketones 56 following standard procedures known to those skilled in the art. Treatment of 56 with a strong base in presence an activated carboxylic acid affords the β-diketones 57 which can be cyclised to pyrazoles 58 by treatment with hydrazine. Compounds of general formula 49 can be synthesised according to previously described methods.
Scheme 9: Method I
Figure imgf000039_0001
Compounds of formula Im can be prepared according to Method L reported in scheme 10.
Figure imgf000040_0001
Figure imgf000040_0002
Figure imgf000040_0003
Ri is OH; linear branched or cyclic Ci-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, oxalakyloxy, oxazalkyloxy, azalkyloxy, dialkylammino, oxalkylammino, azalkylammino, group optionally substituted with one or more F or CN; C5-C6 aryl- or heteroarylmethylammino or C5-C6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups, and R5, Q, Rx, Ry, X3 and n are as defined under formula (I).
Compound 59 can be obtained according to procedures described in Scheme 1. Intermediate 60 can be obtained starting from the corresponding bromo intermediate 59 by methods known to those skilled in the art such as Sonogashira or Suzuki coupling. Hydrolysis of 60 gives compounds of general structure 61 which can be coupled with an amine in presence of a coupling agent to afford compounds 62. Alternatively 59 can be transformed in the corresponding boronate 63 which can be subjected to Chan-Lam coupling to obtain compounds of general formula 64. Hydrolysis of 64 gives the corresponding carboxylic acids 65 which can be coupled with an amine to give compounds 66. Intermediate 63 can be oxidized to give the corresponding phenol 67 which, after hydrolisys of the ester mojety, can be reacted with an amine to afford 69. Alternatively compound 67 can be O-alkylated to 70. Hydrolysis of 70 gives the carboxylic acid 71 which is reacted with an amine following standard procedures to afford 72.
Scheme 10: method L
Figure imgf000041_0001
Compounds of formula In can be prepared according to Method M reported in scheme 11.
Figure imgf000042_0001
Wherein Q is - a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, and Rl5 R5 are as defined under formula (I).
Synthesis of primary amides 74 followed by dehydratation gives the intermediates 75 which can be converted into the amidoxime derivatives 76 by treatment with hydroxylamine. Coupling with a carboxylic acid followed by ring closure gives compounds of general formula 77. Intermediate 73 can be obtained using Method A reported in Scheme 1.
Scheme 11 : Method M
Figure imgf000042_0002
Compounds of formula Io can be prepared according to Method N reported in scheme 12.
Figure imgf000043_0001
Wherein Q is an oxalkylamino, and Rl5 R5 are as defined under formula
(I)-
Reaction of the acyl chlorides 79 with trimethylsilyldiazomethane gives the intermediate 80 which can be converted into the a-bromo ketone 81 by treatment with hydrobromic acid. Reaction of 81 with an acylguanidine gives compounds of general formula 82. Intermediate 73 can be obtained using Method A reported in Scheme 1.
Scheme 12: Method N
Figure imgf000043_0002
Compounds of formula Ip can be prepared according to Method P reported in scheme 13.
Figure imgf000044_0001
wherein Q is a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl and Ri and R5 are as defined under formula (I).
Coupling of 73 with 1-Boc-piperazine according to standard procedures gives compound of general formula 87. Deprotection of 87 affords the intermediate 88 that can then be functionalized by methods known to those skilled in the art such as, Buchwald couplings to give compounds of general formula 89. Intermediate 73 can be obtained using Method A2 reported in Scheme 1
Scheme 13 - Method P
Figure imgf000044_0002
ASSAYS USED TO IDENTIFY SMALL MOLECULE INHIBITORS OF THE WNT SIGNALING PATHWAY.
The pharmacological activity of the exemplary compounds of the invention was first demonstrated in vitro in a Wnt reporter assay.
A Wnt-responsive Luciferase (TCF-Luciferase (Firefly) and a Wnt-independent (Renilla Luciferase (TA-Renilla) reporter plasmid (alone and in combination) were stably transfected in DBTRG-05MG glioblastoma cell line (ATCC) which according to the Wellcome Trust Sanger Institute Database showed no mutations involving APC, Axin and/or β-catenin genes and then considered to have an intact Wnt pathway cascade.
TCF-Luciferase: Three copies of a 4x TCF responsive elements were cloned into the pcDNA3.1/Zeo(+) vector (Invitrogen) after deletion of the constitutive CMV promoter and the insertion of the Firefly Luciferase from Promega (phFL-TK) to measure the activity of the Wnt/ -catenin pathway. The resulting plasmid was sequenced for quality control.
TA-Renilla: Both vectors (pCDNA3.1/Hygro(-) from Invitrogen) and phRL-TK were digested with restriction enzymes Mlul and BamHl and ligated by T4-Ligase to form the final construct, containing the full length cDNA for hRL (human codons optimized Renilla Luciferase) with in 5' the TA-minimal promoter and the backbone of the mammalian expression vector pCDNA3.1/Hygro(-) in which the constitutive CMV promoter was ablated. The construct was fully sequenced for quality control and used as internal control for cell number and toxicity.
Cells were grown in 20 g/ml Zeocin and 20 g/ml Zeocin plus 30 g/ml Hygromicin respectively. The cells were plated at a density of 6500 cells/well in poly-D-lysine pre-treated 96 well-plates.
IC50 determination: 36 hours after plating cells were incubated with 8-points dilutions compound (0.6% DMSO (v/v)). Each compound was tested in triplicate in single plate. Luciferase detection was done with Dual- Luciferase Reporter Assay System (Promega). 24 hours after compound addition, media was removed and 30 μΐ of lx lysis buffer was added to each well for 30 minutes. To each well 45 μΐ of Dual-Glo Luciferase reagent (Promega) were added and after 1 second delay Luciferase was detected for 1 second using Mithras LB940 instrument. After Firefly luciferase quantification 45 μΐ of Dual Stop & Glo reagent (Promega) were added to each well and Firefly Renilla was detected using the same parameters described before.
Data were expressed as % of control for Firefly and Renilla luciferase independently; values were calculated using XLFit version 4.2, with a four parameters sigmoid function (XLFit model 205).
A secondary screen using a luciferase biochemical assay enabled the identification of compounds acting directly on the enzyme (luciferase modulators and /or quenchers) rather than true inhibitors of the Wnt pathway.
Luciferase assay: Quantilum recombinant Luciferase (Promega) was diluted 106-fold in IX Cell Culture Lysis Reagent (Promega) containing 1 mg/ml acetylated BSA. Five microliters of compound dilution (10 μΜ final) was then mixed with 35 μΐ of diluted Quantilum recombinant Luciferase in a 96-well white plate. To each well 20 μΐ of LAR1 (Luciferase assay reagent from Promega) were added and luciferase was detected for 1 second with Mithras LB940 instrument. Each compound was tested in single data point on two different copy cell plates. Data were expressed as % of negative control (DMSO).
OTHER ASSAYS
The pharmacological activity of the compounds of the invention may be tested in vitro for growth inhibition against tumour cell lines. Such cell lines may, for example be representative of glioblastoma (such as DBTRG-05MG), or colorectal (for example DLD-1, HCT 116) cancer. The different genetic background of the cancer cell will facilitate to understand to which level of the pathway the compounds work. If the cells harbour a truncated APC allele, the destruction complex activity is affected; if cells carry a gain of function mutation in the β-catenin gene, which prevents β-catenin protein degradation, this leads to constitutive activation of downstream genes. There are many assays available for testing the growth inhibition. Such assays include the so called soft agar assay (Freedman et al , Cell 3 (1974), 355-359 and Macpherson et al , Virology 23 (1964), pp. 291-294) whereby the growth inhibition does not depend from adhesion of the cells to the plastic material of the well where the assay takes place.
Soft agar anchorage independent assay
DBTRG cells were seeded into a 24-well format in the presence of 25 carrier alone or compound (0.6% DMSO (v/v)). Each well is composed of two agar layers: the bottom layer consists of 0.6% Agar while the top has 0.35% Agar plus cells and compound. Cells (2500 per well) were incubated with 7 34 points dilution compound the day of the plating and the colonies were scored 3 weeks later after o/n staining with MTT solution. Imaging and counting of the colonies was done with the GelCountTM instrument (Oxford Optronix, UK). For IC50 determination the data were expressed as% of control, values were calculated using XLFit version 4.2, with a four parameters sigmoid 5 function (XLFit model 205).
The pharmacological activity of the compounds of the invention may further be tested in vivo in animal models mimicking the disease. These animal models may include those where the cancerous cells are implanted subcutaneously or orthotopically.
FORMULATION AND ADMINISTRATION
Compounds under formula I are formulated preferably in admixture with a pharmaceutically acceptable carrier, excipient or the like. In general, it is preferable to administer the pharmaceutical composition in orally-administrable form, but certain formulations may be administered via a parenteral, intravenous, intramuscular, transdermal, buccal, subcutaneous, suppository, nasal or other route.
One of ordinary skill in the art may modify the formulations within the teachings of the specification to provide numerous formulations for a particular route of administration without rendering the compositions of the present invention unstable or compromising their therapeutic activity. In particular, the modification of the present compounds to render them more soluble in water or other vehicle, for example, may be easily accomplished by minor modifications (salt formulation, esterification, etc.) which are well within the ordinary skill in the art. It is also well within the routineer's skill to modify the route of administration and dosage regimen of a particular compound in order to manage the pharmacokinetics of the present compounds for maximum beneficial effect in patients.
In certain pharmaceutical dosage forms, the pro-drug form of the compounds, especially including ester and ether derivatives, as well as various salt forms of the present compounds, are preferred. One of ordinary skill in the art will recognize how to readily modify the present compounds to pro- drug forms to facilitate delivery of active compounds to a targeted site within the host organism or patient. The routineer also will take advantage of favourable pharmacokinetic parameters of the pro-drug forms, where applicable, in delivering the present compounds to a targeted site within the host organism or patient to maximize the intended effect of the compound.
Actual methods of preparing such dosage forms are known, or will be apparent, to those skilled in this art; for example, see Remington's Pharmaceutical Sciences, Mack Publishing Company, Easton, Pennsylvania, 15th Edition, 1975. The composition or formulation to be administered will, in any event, contain a quantity of the active compound in an amount effective to alleviate the symptoms of the subject being treated.
While human dosage levels have yet to be optimized for the compounds of the invention, generally, a daily dose is from about 0.05 mg/kg to about 100 mg/kg of body weight. The amount of active compound administered will, of course, be dependent on the subject and disease state being treated, the severity of the affliction, the manner and schedule of administration and the judgment of the prescribing physician.
For purposes of the present invention, a prophylactically or preventive effective amount of the compositions according to the present invention (i. e., an amount which substantially reduces the risk that a patient will either succumb to a disease state or condition or that the disease state or condition will worsen) falls within the same concentration range as set forth above for therapeutically effective amounts and is usually the same as a therapeutically effective amount.
In some embodiments of the present invention, one or more compounds of formula (I) are administered in combination with one or more other pharmaceutically active agents. The phrase "in combination", as used herein, refers to agents that are simultaneously administered to a subject. It will be appreciated that two or more agents are considered to be administered "in combination" whenever a subject is simultaneously exposed to both (or more) of the agents. Each of the two or more agents may be administered according to a different schedule; it is not required that individual doses of different agents be administered at the same time, or in the same composition.
Rather, so long as both (or more) agents remain in the subject's body, they are considered to be administered "in combination".
EXAMPLES
All reagents and solvents were obtained commercially. Air and moisture sensitive liquid solutions were transferred via syringe. The course of reactions was followed by thin-layer chromatography (TLC) and/or liquid chromatography-mass spectrometry (HPLC-MS or UPLC-Ms). TLC analyses were performed on silica (Merck 60 F254) and spots revealed by UV visualisation at 254 nm and KMnO4 or ninhydrin stain. Purifications by column chromatography were performed using silica cartridges isolute flash Si or silica (Merck 60) or with flash purification instruments from Biotage. Compounds purities were above 90%.
All nuclear magnetic resonance spectra were recorded using a Bruker Avance AV 400 System (400. 13 MHz for JH) equipped with BBI a probe.
Analytical Methods
Method a
Anaytical HPLC-MS were run using a Waters 2795 separation module equipped with a Waters Micromass ZQ (ES ionisation) and Waters PDA 2996, using a Gemini NH C 18 3.0 μιη 2.00 x 50 mm column. Temperature: 40°C. UV Detection at 215 nm and 254. ESI+ detection in the 80- 1000 m/z range. Gradient: 0. 1%formic acid/water and 0. 1% formic acid/acetonitrile with gradient 95/5 to 5/95 flow l .Oml/min over 10 minutes.
Method b
Anaytical HPLC-MS were run using a Waters 2795 separation module equipped with a Waters Micromass ZQ (ES ionisation) and Waters PDA 2996, using a Gemini NH C 18 3.0 μιη 2.00 x 50 mm column. Temperature: 40°C. UV Detection at 215 nm and 254. ESI+ detection in the 80- 1000 m/z range. Gradient: 0. 1%formic acid/water and 0. 1% formic acid/acetonitrile with gradient 95/5 to 5/95 flow l .Oml/min over 5 minutes.
Method c
Anaytical HPLC-MS were run using a Waters 2795 separation module equipped with a Waters Micromass ZQ (ES ionisation) and Waters PDA 2996, using a X-Bridge C 18 3.5 μηι 2.10 x 50 mm column. Temperature: 40°C.UV Detection at 215 nm and 254. ESI+ detection in the 80-1000 m/z range Gradient: 0.1% ammonia/water and acetonitrile with gradient 85715 to 95/5 flow 0.8 ml/min over 10 minutes .
Method d
Anaytical HPLC-MS were run using a Waters 2795 separation module equipped with a Waters Micromass ZQ (ES ionisation) and Waters PDA 2996, using a X-Bridge C 18 3.5 μιη 2.10 x 50 mm column. Temperature: 40°C.UV Detection at 215 nm and 254. ESI+ detection in the 80-1000 m/z range Gradient: 0.1% ammonia/water and acetonitrile with gradient 85715 to 95/5 flow 0.8 ml/min over 5 minutes.
Method e
Analytical UPLC -MS were run using a Acquity Waters UPLC with equipped with a Waters SQD (ES ionization) and Waters Acquity PDA detector, using a column BEH C18 1,7 μιη, 2, 1 x 5.00. Temperature: 40°C.UV Detection at 215 nm and 254. ESI+ detection in the 80-1000 m/z range Gradient 0.1%ammonia/water and acetonitrile with a gradient 85/15 to 5/95 flow: 0.8 ml/min over 3min.
Method f
Analytical UPLC -MS were run using a Acquity Waters UPLC with equipped with a Waters SQD (ES ionization) and Waters Acquity PDA detector, using a column BEH C18 1,7 μιη, 2, 1 x 5.00. Temperature: 40°C. UV Detection at 215 nm and 254. ESI+ detection in the 80- 1000 m/z range. Gradient 0.1% formic acid/water and 0.1% formic acid/ CH3CN with a gradient 95/5 to 5/95 flow: 0.6 ml/min over 3 minutes.
Preparative HPLC Method
Method a
Preparative HPLC was run using a Waters 2767 system with a binary gradient Module Waters 2525 pump and coupled to a Waters Micromass ZQ25 (ES) or Waters 2487 DAD, using a Gemini NX C 18 5 μηι, 100 x 21.2. Gradient 0.1% formic acid/water and 0.1% formic acid/methanol flow: 40 ml/min.
Method b
Preparative HPLC was run using a Waters 2767 system with a binary gradient Module Waters 2525 pump and coupled to a Waters Micromass ZQ 25 (ES) or Waters 2487 DAD, using a X-Bridge C 18 5 μηι 19 x 150. Gradient 0.1% ammonia/water and methanol flow: 17 ml/min.
Preparative HPLC was run using a Waters 2767 system with a binary gradient Module Waters 2525 pump and coupled to a Waters MS3100 SQ or Waters 2487 DAD, using a X-Bridge C18 5 μηι 19 x 150. Gradient 0.1% formic acid/water and 0.1%formic acid/ methanol flow: 17 ml/min.
EXAMPLE 1 (Method A2): 7> ws-4-(5-Fluoro-6-Methoxy-3-methyl- 2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid pyridine-4-ylamide
l,4-Difluoro-2-methoxy-5-nitro-benzene
Figure imgf000052_0001
K2CO3 (4.77 g, 34.49 mmol) and a catalytic amount of 1,4,7, 10, 13, 16- hexaoxacyclooctadecane were added to a stirred solution of 2,5-difluoro-4- nitro-phenol (3.02 g, 17.25 mmol) in 2-butanone (8 mL) at room temperature. After 30 minutes methyl iodide (2.25 mL, 36.22 mmol) was added and the reaction mixture was heated at 40°C over weekend. The reaction mixture was concentrated under reduced pressure. AcOEt (50 mL) and H2O (50 mL) were added. The organic phase was separated and the acqueous phase was back extracted with AcOEt (3 x 20 mL). The organic layers were collected, washed with brine (50 mL), dried over Na2SO4 and concentrated under reduced pressure to afford 3.04 g of the titled compound as yellow solid (yield 92%).
C7H5F2NO3, calculated [ 189.12] found: No Mass response RT= 1.32, (method f)
1HNMR (DMSO) δ: 3.97 (3H, s), 7.47-7.52 (1H, m), 8.13-8.18 (1H, m). rr w^-4-[(4-Fluoro-5-Methoxy-2-nitro-phenylamino)-methyl]- cyclohexane carboxylic acid methyl ester
Figure imgf000053_0001
K2CO3 (10.02 g, 72.51 mmol) was added to a stirred solution of l,4-Difluoro-2-methoxy-5-nitro-benzene (2.77 g, 14.50 mmol) in DMF (15 mL). After 30 minutes tra«s-4-aminomethyl-cyclohexanecarboxylic acid methyl ester (3.00 g, 14.50 mmol) was added and the reaction mixture was heated at 65°C 3 hours. The reaction mixture was concentrated under reduced pressure and crude was diluted with DCM (50 mL) and H2O (50 mL). The organic phase was separated and the acqueous phase was back extracted with DCM (3 x 20 mL). The organic layers were collected, washed with brine (50 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to afford 4.79 g of the titled compound (yield 98%).
1HNMR (DMSO) δ: 1.02-1.11 (2H, m), 1.29-1.39 (2H, m), 1.61-1.70 (1H, m), 1.80-1.84 (2H, m), 1.89-1.94 (2H, m), 2.22-2.30 (1H, m), 3.25-3.28 (2H, m), 3.57 (3H, s), 3.96 (3H, s), 6.46-6.48 (1H, m), 7.83-7.86 (1H, m), 8.46-8.49 (1H, m).
C16H21FN2O5, Calculated [340.35], found [M+H+] 341, RT= 1.71 (method f).
rr w^-4-[(2-Amino-4-fluoro-5-Methoxy-phenylamino)-methyl]- cyclohexane carboxylic acid methyl ester
Figure imgf000054_0001
tra«5-4-[(4-Fluoro-5-Methoxy-2-nitro-phenylamino)-methyl]- cyclohexane carboxylic acid methyl ester (4.79 g, 14.09 mmol) was suspended in 50 mL of EtOH, mixed with Pd/C 10% (0.50 g) and transferred in a Eyela reactor. The mixture was left under 4 bar of hydrogen at 55°C for 4 hours then it was filtered through cellulose. The cellulose was washed with EtOH (300 mL). The organic solution was concentrated under reduced pressure to give 4.28 g of the titled compound (yield 98%).
1HNMR (DMSO) δ: 0.94- 1.04 (2H, m), 1.25- 1.36 (2H, m), 1.49- 1.58 (1H, m), 1.88- 1.91 (4H, m), 2.22-2.29 (1H, m), 2.80-2.83 (2H, m), 3.57 (3H, s), 3.67 (3H, s), 4. 18-4.21 (1H, m), 4.39 (2H, bp), 6.13-6. 15 (1H, m), 6.36-6.40 (1H, m).
rr w^-4-(5-Fluoro-6-Methoxy-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000054_0002
Triphosgene (4. 10 g, 13.81 mmol) was added portionwise to a stirred solution of tra«5-4-[(2-Amino-4-fluoro-5-methoxy-phenylamino)-methyl]- cyclohexanecarboxylic acid methyl ester (4.28 g, 13.81 mmol) and TEA (1.92 mL, 13.81 mmol) in THF (40 mL) cooled to 0°C. The reaction mixture was left to warm to room temperature and it was left overnight. H2O (50 mL) was slowly added to the reaction mixture then THF was removed under reduced pressure. The formed precipitate was filtered, washed with H2O (3 X 20 mL) and dried to give 4.51 g of the titled compound (yield 97%).
1HNMR (DMSO) δ: 1.01-1.10 (2H, m), 1.19-1.29 (2H, m), 1.60-1.63
(2H, m), 1.70-1.78 (1H, m), 1.85-1.88 (2H, m), 2.20-2.27 (1H, m), 3.55 (3H, s), 3.58-3.60 (2H, m), 3.81 (3H, s), 6.84-6.87 (1H, m), 7.00-7.02 (1H, m), 10.70 (1H, s)
C17H21FN2O4, Calculated [336.37], found [M+H+] 337, RT= 1.24 (method f).
rr w^-4-(5-Fluoro-6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000055_0001
Mel (1.1 1 mL, 17.86 mmol) was added to a stirred solution of tra«5-4-
(5-Fluoro-6-methoxy-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarboxylic acid methyl ester (1.50 g, 4.46 mmol) in DMF (16 mL) containing K2CO3 (0.80 g, 1.30 mmol). The reaction mixture was heated at 65 °C overnight then it was concentrated under reduced pressure. DCM (50 mL) and H2O (50 mL) were added to the crude; the organic layer was separated and the acqueous phase was washed with DCM (3 x 20 mL). The organics layers were collected, washed with brine (50 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude material was purified by silica column (gradient of cyclohexane/AcOEt) to give 1.24 g of the titled compound (yield 81%). 1HNMR (DMSO) δ: 1.01-1.11 (2H, m), 1.18-1.28 (2H, m), 1.60-1.63 (2H, m), 1.70-1.79 (1H, m), 1.84-1.88 (2H, m), 2.20-2.26 (1H, m), 3.25 (3H, s), 3.55 (3H, s), 3.63-3.65 (2H, m), 3.83 (3H, s), 7.07-7.09 (1H, m), 7.16-7.18 (1H, m).
C18H23FN2O4, Calculated [350.39], found [M+H+] 351 RT= 1.39
(method f).
rr w^-4-(5-Fluoro-6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid
Figure imgf000056_0001
LiOH (0.13 g, 5.30 mmol) was added to a stirred solution of tra«5-4-(5- Fluoro-6-methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarboxylic acid methyl ester (1.24 g, 3.53 mmol) in a mixture of THF (10 mL) and H2O (3 mL). The reaction was stirred at room temperature overnight then it was concentrated under reduced pressure. The residue was diluted with H2O (10 mL) and the pH adjusted to 3 using HC1 1.0 N. The solid obtained was filtered, washed with water (3 x 10 mL) and dried to give 1.19 g of the titled compound (yield quantitative).
1HNMR (DMSO) δ: 1.00-1.09 (2H, m), 1.16-1.25 (2H, m), 1.59-1.62 (2H, m), 1.69-1.78 (1H, m), 1.84-1.87 (2H, m), 3.26 (3H, s), 3.63-3.65 (2H, m), 3.83 (3H, s), 7.07-7.09 (1H, m), 7.16-7.19 (1H, m), 12.00 (1H, bp).
C17H21FN2O4 Mass (calculated) [336.37]; found [M+H+]=337, RT=1.15 (method f).
rr w^-4-(5-Fluoro-6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid pyridine-4- ylamide
Figure imgf000057_0001
A mixture of tra«s-4-(5-Fluoro-6-methoxy-3-methyl-2-oxo-2,3- dihydro-benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid (110 mg, 0.33 mmol), TEA (55 μΐ,, 0.39 mmol), HATU (149 mg, 0.39 mmol) and pyridin-4ylamine (37 mg, 0.39 mmol) in DMF (2 mL) was stirred at room temperature overnight. The reaction mixture was concentrated under reduced pressure. The residue was dissolved in DCM (5 mL) washed with H20 (5 mL) and then with NaOH 1.0 N (5 mL). The organic layer was concentrated under reduced pressure and crude material was tritured with CH3CN to give 92 mg of the titled compound (yield 68%).
1HNMR (DMSO) δ: 1.02-1.13 (2H, m), 1.29-1.39 (2H, m), 1.65-1.68 (2H, m), 1.76-1.85 (3H, m), 2.26-2.33 (1H, m), 3.26 (3H, s), 3.67-3.69 (2H, m), 3.84 (3H, s), 7.11-7.13 (1H, m), 7.17-7.19 (1H, m), 7.52-7.54 (2H, m), 8.36-8.37 (2H, m), 10.19 (1H, s).
C22H25FN403 Mass (calculated) [412.47]; found [M+H+]= 413, RT=0.95 (method f).
EXAMPLE 2 (Method A3): 5-Methoxy-l-methyl-3-[fr ns-4-(4- pyrimidin-2-yl-piperazine-l-carbonyl)-cyclohexylmethyl]-l,3-dihydro- benzoimidazol-2-one 2-Fluoro-4-methoxy-l-nitro-benzene
Figure imgf000057_0002
K2C03 (35.20 g, 255 mmol) was added to a stirred solution of 3-Fluoro- 4-nitro-phenol (20.00 g, 127.30 mmol) in 2-butanone (60 mL) at room temperature. After 30 minutes methyl iodide (8.72 mL, 140.00 mmol) was added and the reaction mixture was heated at 40°C 22 hours. The mixture was concentrated under reduced pressure. AcOEt (400 mL) and H2O (600 mL) were added. The organic phase was separated and the acqueous phase was back extracted with AcOEt (3 xlOO mL). The organic layers were collected, washed with brine (150 mL), dried over Na2SO4 and concentrated under reduced pressure. The obtained solid was dissolved in DCM (300 mL) and washed with NaOH IN (200 mL). The DCM solution was concentrated under reduced pressure to afford 18.1 g of the titled compound (yield 83%).
1HNMR (CDC13) δ: 3.90 (s, 3H), 6.71-6.78 (2H, m), 8.07-8.12 (m, 1H). rr w^-4-[(5-Methoxy-2-nitro-phenylamino)-methyl]- cyclohexanecarboxylic acid methyl ester
Figure imgf000058_0001
K2CO3 (43.64 g, 315.80 mmol) was added to a stirred solution of 2-Fluoro-4-methoxy-l-nitro-benzene (18.00 g, 105.26 mmol) in DMF (60 mL). After 30 minutes tra«s-4-aminomethyl-cyclohexanecarboxylic acid methyl ester hydrochloride (21.79 g, 105.26 mmol) was added and the reaction mixture was heated at 50°C 22 hours. The reaction mixture was filtered and the precipitate was washed with DCM (5 x 50 mL). The organic solution was concentrated to give 33.89 g of the titled compound (yield quantitative).
1HNMR (DMSO) δ: 1.00-1.10 (2H, m), 1.27-1.38 (2H, m), 1.59-1.69 (1H, m), 1.79-1.83 (2H, m), 1.90-1.93 (2H, m), 2.22-2.29 (1H, m), 3.20-3.23 (2H, m), 3.56 (3H, s), 3.84 (3H, s), 6.26-6.31 (2H, m), 7.99-8.01 (1H, m), 8.38-8.41 (1H, m). C 16H22N2O5 Mass (calculated) [322.36] ; found [M+H+]=323, RT= 1.73 (method f).
rr w^-4-[(5-Methoxy-2-amino-phenylamino)-methyl]- cyclohexanecarboxylic acid methyl ester
Figure imgf000059_0001
ra«5-4-[(5-Methoxy-2-nitro-phenylamino)-methyl]- cyclohexanecarboxylic acid methyl ester (33.90 g, 105.28 mmol) was dissolved in 350 mL of EtOH, mixed with Pd/C 10% (1.80 g) and transferred into an Ecoclave reactor. The mixture was left overnight with stirring under 5 bar of hydrogen then it was filtered through cellulose pads. The cellulose was washed with DCM (5 x 60 mL). The organic solution was concentrated under reduced pressure to give 27.46 g of the titled compound (yield 89%).
1HNMR (DMSO) δ: 0.92- 1.03 (2H, m), 1.23- 1.34 (2H, m), 1.48- 1.57 (1H, m), 1.85- 1.92 (4H, m), 2.21-2.28 (1H, m), 2. 1 (2H, d, J= 6.0 Hz), 3.56 (3H, s), 3.57 (3H, s), 4.05 (2H, bp), 4.44 ( 1H, d, J= 6.0 Hz), 5.93-5.95 (2H, m), 6.40-6.43 (1H, m).
rr w^-4-(6-Methoxy-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclo hexanecarboxylic acid methyl ester
Figure imgf000059_0002
CDI (38. 13 g, 235. 10 mmol) was added to a stirred solution of trans-A- [(5-Methoxy-2-amino-phenylamino)-methyl]-cyclohexanecarboxylic acid methyl ester (27.46 g, 94.04 mmol) in AcOEt (300 mL) under N2. The reaction mixture was left overnight then H2O (500 mL) was added. A precipitate formed and it was filtered, washed with AcOEt (3*30 mL) and discarded. The organic washes were collected to the mother liquors. The organic layer was separated and the acqueous phase was back extracted with AcOEt (3 * 100 mL). The organic layers were collected, washed with HCl 1.0N (300 mL) and brine (300 mL), dried over Na2SO4 and concentrated under reduced pressure. The dark brown solid was washed with Et2O (3 x 100 mL) and dried under reduced pressure to give 23.19 g of the titled compound (yield 77%).
1HNMR (DMSO) δ: 0.99-1.09 (2H, m), 1.17-1.28 (2H, m), 1.59-1.63 (2H, m), 1.67-1.77 (1H, m), 1.84-1.88 (2H, m), 2.18-2.26 (1H, m), 3.54 (3H, s), 3.6 (2H, d, J=7.2 Hz), 3.71 (3H, s), 6.52 (1H, dd, J= 8.4 and 2.4 Hz), 6.73 (1H, d, J= 2.4 Hz), 6.82 (1H, d, J= 8.4 Hz), 10.56 (1H, s).
C17H22N2O4 Mass (calculated) [318.38]; found [M+H+]=319, RT=1.25 (method f).
rr w^-4-(6-Methoxy-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclo hexanecarboxylic acid
Figure imgf000060_0001
ra«5-4-(6-Methoxy-2-oxo-2,3-dihydro-benzoimidazol- l- ylmethyl)cyclo hexanecarboxylic acid methyl ester (985 mg, 3.10 mmol) was dissolved in THF (6 mL), then a solution of LiOH (221 mg, 9.2 mmol) in H2O (3 mL) was added and the resulting was stirred overnight at r.t. 5 mL of water were added, THF was removed under reduced pressure and HCl 1M was added to reach pH 4 with the formation of a white precipiate. The precipitate was filtered and washed with DCM (5 mL) and dried over reduced pressure to give 400 mg of the titled compound (yield 42%).
1HNMR (DMSO) δ: 0.98-1.08 (2H, m), 1.14-1.24 (2H, m), 1.59-1.62 (2H, m), 1.68-1.76 (1H, m), 1.82-1.86 (2H, m), 3.26 (3H, s), 3.61 (2H, d, J= 7.2 Hz), 3.73 (3H, s), 6.61 (1H, dd, J= 2.0 and 8.4 Hz), 6.80 (1H, d, J= 2.0 Hz), 6.99 (1H, d, J= 8.4 Hz), 11.97 (1H, bs).
6-Methoxy-l-[ir w^-4-(4-pyrimidin-2-yl-piperazine-l-carbonyl)- cyclo hexylmethyl]-l,3-dihydro-benzoimidazol-2-one
Figure imgf000061_0001
TEA (55 μΐ,, 0.39 mmol), HATU (150 mg, 0.39 mmol) and 2-piperazin- 1-yl-pyrimidine (65 mg, 0.39 mmol) were added to a solution of trans-4-(6- Methoxy-2-oxo-2,3-dihydro-benzoimidazol- l-ylmethyl)- cyclohexanecarboxylic acid (100 mg, 0.33 mmol) in DCM (2 mL). The mixture was heated at 35°C for four hours. The solution was washed with 0.4 M Na2CO3 (2 mL), NH4C1 (2 mL) and then with water (2 mL). The organic layer was concentrated under reduced pressure and crude was purified by silica column (ethyl acetate 95/MeOH 5) to give 85 mg of the title compound (yield 57%).
1HNMR (CDC13) δ: 1.13- 1.24 (2H, m), 1.52-1.62 (2H, m), 1.79- 1.88
(4H, m), 1.91-1.99 (1H, m), 2.45-2.53 (1H, m), 3.55-3.56 (2H, m), 3.67-3.72 (4H, m), 3.79-3.85 (7H, m), 6.53-6.57 (2H, m), 6.61-6.64 (1H, m), 6.96-6.98 (1H, m), 8.32-8.33 (2H, m), 9.01 (1H, s).
C24H30N6O3 Mass (calculated) [450.55]; found [M+H+]= 451, RT=1.14 (method f).
5-Methoxy-l-methyl-3-[ir w^-4-(4-pyrimidin-2-yl-piperazine-l- carbonyl)-cyclohexylmethyl]-l,3-dihydro-benzoimidazol-2-one
Figure imgf000062_0001
NaH, (60% dispersion in mineral oil, 12 mg, 0.3 mmol) and Mel (18.7 μL, 0.3 mmol) were added to a solution of 6-Methoxy-l-[tra«5-4-(4- pyrimidin-2-yl-piperazine-l-carbonyl)-cyclohexylmethyl]-l,3-dihydro- benzoimidazol-2-one (68 mg, 0.15 mmol) in DMF (1.5 mL). The mixture was stirred at room temperature 6 hours then was concentrated under vacuum. DCM (2 mL) and water (3 mL) were added to the crude material. The organic layer separated and then concentrated under reduced pressure. The crude was purified by silica column (ethyl acetate 9/MeOH 1) to afford 60 mg of the titled compound (yield 86%).
1HNMR (CDC13) δ: 1.13- 1.22 (2H, m), 1.51-1.61 (2H, m), 1.78- 1.86 (4H, m), 1.89-1.97 (1H, m), 2.44-2.51 (1H, m), 3.39 (3H, s), 3.53-3.55 (2H, m), 3.65-3.69 (2H, m), 3.70-3.72 (2H, m), 3.78-3.85 (7H, m), 6.52-6.55 (1H, m), 6.57-6.58 (1H, m), 6.64-6.67 (1H, m), 6.85-6.87 (1H, m), 8.32-8.33 (2H, m).
C25H32N6O3 Mass (calculated, for the acid) [464.57]; found [M+H+]=465, RT=1.27 (method f).
EXAMPLE 3 (Method A4): 3-[fr ws-4-(4-acetyl-piperazine-l- carbonyl)-cyclo hexylmethyl]-5-bromo-l-methyl-l,3-dihydro-imidazo[4,5- b]pyridin-2-one l-(4-{f rans 4-[(6-Bromo-3-nitro-pyridin-2-ylamino)- methyljcyclohexane carbonyl}-piperazin-l-yl)-ethanone
Figure imgf000063_0001
K2CO3 (0.677 g, 4.90 mmol) was added to a mixture of 2,6-Dibromo-3- nitro-pyridine (1,38 g, 4.90 mmol), and l-[ trans 4-(4-Aminomethyl- cyclohexanecarbonyl)-piperazin- l-yl]-ethanone ( 1.3 1 g, 4.90 mmol) in toluene (14 mL). The resulting mixture was stirred at 60°C 5 h. The mixture was washed with water ( 10 mL) and the aqueous phase was extracted with DCM (5 mL). The combined organic layers were dried over Na2SO4 and concentrated under reduced pressure. The residue was purified by silica column with DCM:MeOH 95 :5 as eluent to give 0.85 g of the titled compound (yield 37%).
1HNMR (CDC13) δ: 1.07- 1. 17 (2H, m), 1.59- 1.84 (5H, m), 1.92- 1.96 (2H, m), 2. 12 (3H, s), 2.42-2.50 (1H, m), 3.43-3.55 (6H, m), 3.60-3.65 (4H, m), 6.76 (1H, d, J= 8.4 Hz), 8.21 ( 1H, d, J= 8.4 Hz), 8.39-8.41 (1H, m).
\-(Trans 4-{4-[(3-Amino-6-bromo-pyridin-2-ylamino)- methyljcyclohexane carbonyl}-piperazin-l-yl)-ethanone
Figure imgf000063_0002
A solution of - \-{Trans 4-{4-[(6-bromo-3-nitro-pyridin-2-ylamino)- methyl] cyclohexanecarbonyl}-piperazin- l-yl)-ethanone (1.0 g, 2.14 mmol) in THF (20 mL) was added to Ni-Ra 50% suspension in water (350 μΐ^). The reaction mixture was hydrogenated in an Eyela apparatus at 5 Bar at room temperature for 2 hours and at 45 °C for 4 hours. Since not complete conversion was observed the reaction mixture was filtered through a cellulose pad and 100 mg of Pt/C 5% were added. The mixture was then kept under 5 bar of hydrogene overnight at room temperature with stirring. The mixture was filtered through cellulose pad and concentrated under reduced pressure. The residue was purified by silica column (AcOEt 9/MeOH 1) to give 740 mg of titled compound (yield 79%).
C19H28BrN5O2 Mass (calculated) [438.37]; found [M+H+]=438/440,
RT=1.14 (method f)
3-[trans 4-(4-Acetyl-piperazine-l-carbonyl)-cyclohexylmethyl]-5- bromo-l,3-dihydro-imidazo[4,5-b]pyridin-2-one
Figure imgf000064_0001
1 -(trans 4- { 4- [(3 - Amino-6-bromo-pyridin-2-ylamino)-methyl] - cyclohexane carbonyl}-piperazin- l-yl)-ethanone (0.740 g, 1.69 mmol) was suspended in THF (15 mL) with TEA (0.170 mL, 1.69 mmol) at 0°C. Triphosgene (165 mg, 0.56 mmol) was added portionwise in 30 minutes. The mixture was allowed to reach r.t. and then an additional equivalent of triphosgene (165 mg, 0.56 mmol) was added. The mixture was heated at 60°C until complete convertion of the starting material occured. The reaction mixture was then allowed to reach r.t. and water (5 mL) was added. The solvent was removed under reduced pressure and the residue was redissolved in DCM (20 mL). The solution was dried over Na2SO4, filtered, and concentrated to give 0.710 g of the titled compound as a pale brown residue that was used without further purification (yield 91%).
C20H26BrN5O3 Mass (calculated) [464.37]; found [M+H+]=464/466, RT=1.04 (method f)
3-[ trans 4-(4-Acetyl-piperazine-l-carbonyl) cyclohexylmethyl]-5- bromo-l-methyl-l,3-dihydro-imidazo[4,5-b]pyridin-2-one
Figure imgf000065_0001
K2CO3 (0.46 g, 1.99 mmol) was added to a solution of trans -3-[4-(4- Acetyl-piperazine- 1 -carbonyl)-cy clohexylmethyl] -5 -bromo- 1 , 3 -dihydro- imidazo[4,5-b]pyridin-2-one (0.71 g, 1.53 mmol) in DMF (10 mL). After 10 minutes Mel (0.12 mL, 1.99 mmol) was added and the mixture was stirred at r.t. for 4 hours then it was concentrated under reduced pressure. DCM (10 mL) and H2O (5 mL) were added to the crude; the organic layer was separated and concentrated under reduced pressure. The crude was purified by silica column (gradient of AcOE MeOH, 95:5) to give 0.61 g of the titled compound (yield 83%).
1HNMR (CDC13) δ: 1.10-1.20 (2H, m), 1.50-1.59 (2H, m), 1.74-1.82 (4H, m), 1.96-2.06 (1H, m), 2.12 (3H, s), 2.39-2.47 (1H, m), 3.42-3.52 (7H, m), 3.59-3.62 (4H, m), 3.81 (2H, d, J= 7.2 Hz), 7.03 (1H, d, J= 8.0 Hz), 7.17 (1H, d, J= 8.0 Hz).
C21H28BrN5O3 Mass (calculated) [478.39]; found [M+H+]=478/480, RT=1.14 (method f) EXAMPLE 4 (Method B): 3-[7> ns-4-(4-Acetyl-piperazine-l- carbonyl)-cyclohexylmethyl]-5-((E)-3methoxy-propenyl)-l-methyl-l,3- dihydro-imidazo[4,5-b]pyridin-2-one
3-[Trans 4-(4-Acetyl-piperazine-l-carbonyl)-cyclohexylmethyl]-5- ((E)-3methoxy-propenyl)-l-methyl-l,3-dihydro-imidazo[4,5-b]pyridin-2- one
Figure imgf000066_0001
3-[trans 4-(4-Acetyl-piperazine- l-carbonyl) cyclohexylmethyl]-5- bromo-l-methyl-l,3-dihydro-imidazo[4,5-b]pyridin-2-one (70 mg,
0.15 mmol), ((E)-3-Methoxy-propenyl)-(4,4,5,5-tetramethyl-[l,3]dioxolan-2- yl)-borane (87 mg, 0.44 mmol), K3PO4 (109 mg, 0.51 mmol), were dissolved in a mixture of toluene and water (20: 1, 2.1 ml)), then tricyclohexyl- phosphine (4.0 mg, 0.01 mmol) and Pd(OAc)2 (3 mg, 0.01 mmol) were added. The resulting mixture was irradiated at 90°C in microwave apparatus for 10 minutes. Water (2 ml) was added, layers were separated and the water phase was additionally washed with DCM (2mL). The organic phases were collected, dried over Na2SO4, filtered and the solvent evaporated. The residue was purified first by silica column (AcOEt/MeOH 9: 1) and then by preparative HPLC (method b) to give 18 mg of the titled compound (yield 21%).
1HNMR (CDC13) δ: 1.11- 1.20 (2H, m), 1.50-1.60 (2H, m), 1.74-1.77 (2H, m), 1.81-1.85 (2H, m), 1.99-2.07 (1H, m), 2.12 (3H, s), 2.41-2.48 (1H, m), 3.41-3.51 (10H, m), 3.58-3.62 (4H, m), 3.85 (2H, d, J= 7.2 Hz), 4.14-4.16 (2H, m), 6.62-6.79 (2H, m), 6.94 (1H, d, J= 8.0 Hz), 7.07 (1H, d, J= 8.0 Hz).
C25H35N5O4 Mass (calculated) [469.59]; found [M+H+]=470, RT=1.1 1 (method f)
EXAMPLE 5 (Method C): rr ns-4-{5-[(2-Dimethylamino-ethyl)- methyl-amino]-l-methyl-2-oxo-l,2-dihydro-imidazo[4,5-b]pyridin-3- ylmethyl}-cyclohexanecarboxylic acid pyridin-4-ylamide
rr w^-4-[(6-Bromo-3-nitro-pyridin-2-ylamino)-methyl]- cyclohexanecarboxylic acid methyl ester
Figure imgf000067_0001
K2CO3 (2.27 g, 16.4 mmol) and tra«s-4-aminomethyl- cyclohexanecarboxylic acid methyl ester (1.70 g, 8.2 mmol) were added to a stirred solution of 2,2-Dibromo-3-nitropyridine (2.1 g, 7.45 mmol) in toluene (20 ml). The reaction mixture was heated at 60°C overnight. H2O (15 mL) was added, the organic phase was separated, dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by silica column (Cyclohexane/DCM 3 :2) to afford 1.45 g of the titled compound as a yellow crystalline solid (yield 52%).
1HNMR (CDC13) δ: 1.03- 1.13 (2H, m), 1.41-1.51 (2H, m), 1.62-1.72 (IH, m), 1.89- 1.94 (2H, m), 2.02-2.06 (2H, m), 2.24-2.31 (IH, m), 3.51 (2H, t, J=6.0 Hz), 3.66 (3H, s), 6.76 (IH, d, J=8.4 Hz), 8.2 (IH, d, J=8.4 Hz), 8.38 (IH, brs)
C14H18BrN3O4, Calculated [372.22], No mass response, RT= 1.88 (method f).
rr w^-4-({6-[(2-Dimethylamino-ethyl)-methyl-amino]-3-nitro- pyridin-2-ylamino}-methyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000068_0001
N, N, N'-trimethylethylethlenediammine (2 mL) was added to trans- 4- [(6-Bromo-3-nitro-pyridin-2-ylamino)-methyl]-cyclohexanecarboxylic acid methyl ester (350 mg, 1.42 mmol) and the mixture was stirred at 60°C 2 hours. The resulting solution was concentrated under reduced pressure and crude was purified by silica column (AcOEt/NH3 2.0 N solution in MeOH 9: 1) to afford 340 mg of the titled compound (yield 92%).
1HNMR (CDC13) δ: 0.99-1.09 (2H, m), 1.38-1.48 (2H, m), 1.67 (1H, bs), 1.88- 1.92 (2H, m), 2.00-2.04 (2H, m), 2.22-2.31 (7H, m), 2.52-2.56 (2H, t, J= 6.4 Hz), 3.15 (3H, s), 3.42 (2H, t, J= 6.4 Hz), 3.66 (3H, s), 3.76 (2H, bs), 5.92 (1H, d, J=9.6 Hz), 8.16 (1H, d, J= 9.6 Hz), 8.88 (NH, brs).
C19H31N5O4, Calculated [393.49], found [M+H+] 394, RT= 1.09 (method f).
rr w^-4-{5-[(2-Dimethylamino-ethyl)-methyl-amino]-2-oxo-l,2- dihydro-imidazo[4,5-b]pyridin-3-ylmethyl}-cyclohexanecarboxylic acid methyl ester
Figure imgf000068_0002
71ra«5-4-({6-[(2-Dimethylamino-ethyl)-methyl-amino]-3-nitro-pyridin- 2-ylamino} methyl)-cyclohexanecarboxylic acid methyl ester (340 mg, 0.86 mmol) was reduced in presence of Pd/C (30 mg 10% w/w) in THF (15 mL) using an Eyela apparatus at 60°C at 4 bar of hydrogen. After overnight 70% of conversion was observed, the reaction mixture was filtered through a cellulose pad and triphosgene (127 mg, 0.5 eq) and TEA (1 eq) were added. The mixture was left stirring for 16 h at r.t. Water (1 ml) was added, THF was evaporated and DCM (10 mL) was added. The DCM solution was washed with Na2CO3 (0.4 M, 2 x 15 ml), the organic layer was collected, dried over Na2SO4, filtered and the solvent remove under reduced pressure. The crude was purified by column chromatography using a silica-NH2 cartridge and AcOEt as eluent. 145 mg of the titled compound were isolated (yield 43% over 2 steps).
C20H31N5O3, Calculated [389.50], found [M+H+] 390, RT= 0.85 (method f).
rr w^-4-{5-[(2-Dimethylamino-ethyl)-methyl-amino]-l-methyl-2- oxo-l,2-dihydro-imidazo[4,5-b]pyridin-3-ylmethyl}- cyclohexanecarboxylic acid methyl ester
Figure imgf000069_0001
To a solution of tra«5-4-{5-[(2-Dimethylamino-ethyl)-methyl-amino]-2- oxo- l,2-dihydro-imidazo[4,5-b]pyridin-3-ylmethyl}-cyclohexanecarboxylic acid methyl ester (145 mg, 0.37 mmol) in DMF (2 mL), K2CO3 (67 mg, 48 mmol) and Mel (25 μΕ, 0.41 mmol) were added. The mixture was stirred at r.t. overnight. The sovent was removed under reduced pressure and the residue was dissolved in DCM (6 ml). Water (4 ml) was added, the organic layer was separated, dried over Na2SO4, filtered and the solvent removed under reduced pressure. The residue was purified by chromatography using a silica-NH2 cartridge and DCM/MeOH 9: 1 as eluent phase to afford 170 mg of the titled compound containing 60% of its N-Methyl quaternary salt.
C21H33N5O3, Calculated [403.53], found [M+H+] 404, RT= 0.84 (method f)
rr w^-4-{5-[(2-Dimethylamino-ethyl)-methyl-amino]-l-methyl-2- oxo-l,2-dihydro-imidazo[4,5-b]pyridin-3-ylmethyl}-cyclohexane lithium carboxylate
Figure imgf000070_0001
LiOH (11.1 mg, 0.46 ml) in water (1 mL) was added to a solution of trans-4- { 5 - [(2-Dimethylamino-ethyl)-methyl-amino] - 1 -methyl-2-oxo- 1,2- dihydro-imidazo [4,5-b]pyridin-3-ylmethyl}-cyclohexanecarboxylic acid methyl ester (170 mg, 0.42 mmol) in THF (4 mL). The solution was stirred at r.t. overnight. The solution was concentrated under reduced pressure and the residue used in the next steps without further purification. Obtained 126 mg of white solid (yield 99%).
C20H30N5O3Li Mass (calculated, for the acid) [389.50]; found [M+H+]=390.
RT=0.70 (method f)
rr w^-4-{5-[(2-Dimethylamino-ethyl)-methyl-amino]-l-methyl-2- oxo-l,2-dihydro-imidazo[4,5-b]pyridin-3-ylmethyl}- cyclohexanecarboxylic acid pyridin-4-ylamide
Figure imgf000071_0001
A mixture of tra«5-4-{5-[(2-Dimethylamino-ethyl)-methyl-amino]- l- methyl-2-oxo- l,2-dihydro-imidazo[4,5-b]pyridin-3-ylmethyl}-cyclohexane lithium carboxylate (58 mg, 0.15 mmol), TEA (18 mg, 0. 18 mmol), HATU (68.4 mg, 0. 18 mmol) and 4-aminopyridine ( 17 mg, 0. 18 mmol) in DMF (2 mL) was left stirring at r.t. for 4 h. The reaction mixture was concentrated under reduced pressure and the residue was purified by SCX cartridge, and then by two silica columns using AcOEt/NH3 in MeOH and DCM/MeOH 9: 1 as eluant systems. Obtained 33mg of the titled compound (yield 49%).
1HNMR (CDC13) δ: 1. 1 1- 1.21 (2H, m), 1.49- 1.59 (2H, m), 1.85- 1.89 (2H, m), 1.97-2.08 (3H, m), 2.21-2.29 (1H, m), 2.35 (6H, s), 2.54 (2H, t, J= 7.2 Hz), 3.01 (3H, s), 3.36 (3H, s), 3.70 (2H, t, J= 7.2 Hz), 3.77 (2H, d, J= 7.2 Hz), 6. 14 ( 1H, d, J= 8.8 Hz), 7.04 (1H, d, J= 8.8 Hz), 7.48 (2H, d, J= 5.2 Hz), 7.63 ( 1H, bs), 8.46 (2H, d, J= 5.2 Hz).
C25H35N7O2 Mass (calculated) [465.60]; found [M+H+]=466. RT=0.69 (method f) EXAMPLE 6 (Method D): 7> ns-4-[6-(4-Methoxy-benzyloxy)-3- methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl]- cyclohexanecarboxylic acid pyridin-4-ylamide
2-(3-flu
Figure imgf000072_0001
In a 500 ml four necked round bottom flask 3,4-dihydro-2H-pyran (19.6 g, 216.4 mmol) and PTSA (1.0 g, 5.4 mmol) were dissolved in dry dioxane ( 170 ml) then cooled to 10°C. A solution of 3-fluoro-4-nitrophenol (17.0 g, 108.2 mmol) in dry dioxane (80 ml) was added dropwise keeping temperature below 10°C, then the reaction mixture was stirred for 2h at rt. The reaction was quenched by adding a saturated solution of Na2CO3 (300 ml) and the organic phase was extracted with DCM (2x 500 ml). The organic layer was washed with a saturated solution of Na2CO3 (2x 500 ml) and then with brine (2x500 ml). The DCM solution was dried over Na2SO4, filtered and evaporated under reduced pressure to give 26.6 g of a brownish solid. This was triturated with MTBE (70 ml) and filtered to give 14.5 g of the titled compound as a pale yellow crystalline solid. The mother liquors were evaporated under reduced pressure to give a dark oil (9.6 g) that was purified by silica column using a PE/EtOAc 9/1 mixture as eluent, to give 3.0 g of the titled compounds. This batch was added to the previous one to give 17.5 g (72.6 mmol, yield 67%) of titled compound as a pale yellow crystalline solid.
TLC: (EDP/EtOAc 9/1) Rf = 0.54 (UV). 7> ns-4-{[2-nitro-5-(tetrahydro-2H-pyran-2- yloxy)phenylamino]methyl}cyclo hexanecarboxylic acid methyl ester
Figure imgf000073_0001
In a 500 ml four necked round bottom flask 2-(3-fluoro-4- nitrophenoxy)tetrahydro-2H-pyran (16.3 g, 67.6 mmol) was dissolved in dry DMF (150 ml) then K2CO3 (18.72 g, 135.2 mmol) was added. In the meantime in a 250 ml two necked round bottom flask, methyl trans-A- (aminomethyl)cyclohexane carboxylate hydrochloride (14.0 g, 67.6 mmol) was dissolved in dry DMF (100 ml) then TEA (9.4 ml, 67.6 mmol) was added. After few minutes the suspension was filtered under Argon and the filtrate was added to the first flask. The suspension was stirred at 50°C overnight. The reaction mixture was quenched with water (300 ml) then extracted with DCM (2x500 ml). The collected organic solutions were washed with water (2x500 ml) and brine (2x500 ml), dried over Na2SO4, filtered and evaporated under reduced pressure to give 25.6 g (65.2 mmol, yield 97%) of the titled compound as a yellow solid. This was used in the next step with no further purification.
rr ns-4-{[2-amino-5-(tetrahydro-2H-pyran- 2yloxy)phenylamino]methyl}cyclo hexanecarboxylic acid methyl ester
Figure imgf000073_0002
In a 1L four necked round bottomed flask tra«s-4-{ [2-nitro-5- (tetrahydro-2H-pyran-2-yloxy)phenylamino]methyl}cyclohexanecarboxylic acid methyl ester (25.1 g, 64.0 mmol) was suspended in EtOH (600 ml) then it was completely dissolved by heating before adding Pd/C (1.4 g, 12.8 mmol) and hydrazine monohydrate (6.9 ml, 140.8 mmol). The system was refluxed for 5 hours. The reaction mixture was allowed to reach room temperature, filtered on a celite pad and the mother liquors evaporated under reduced pressure. The residue was taken up with DCM (500 ml), washed with water (2x500 ml), 5% citric acid (2x500 ml) and then brine (2x500 ml). The organic solution was dried over Na2SO4, filtered and evaporated under reduced pressure to give 20.0 g of the titled compound as a brown solid (yield 86%).
TLC: (Cy/EtOAc 2/8) Rf = 0.68 (UV).
rr ns-4-[2-oxo-6-(tetrahydro-2H-pyran-2-yloxy)-2,3- dihydrobenzoimidazol-l-ylmethyl]-cyclohexanecarboxylic acid methyl ester
Figure imgf000074_0001
CDI (11.7 g, 72.1 mmol) was added to a dry THF (500 ml) solution of tra«5-4-{[2-amino-5-(tetrahydro-2H-pyran-2- yloxy)phenylamino]methyl}cyclohexane carboxylic acid methyl ester (13.1 g, 36.1 mmol) in a 1L four necked round bottom flask. The reaction mixture was stirred at room temperature. The solvent was evaporated under reduced pressure and the residue was taken up with DCM (500 ml) then washed with water (2x500 ml) and brine (2x500 ml). The organic layer was dried over Na2SO4, filtered and evaporated under reduced pressure to give 14.5 g (yield quantitative) of crude intermediate as a brown solid. This was used in the next step with no further purification.
rr w^-4-[3-methyl-2-oxo-6-(tetrahydro-2H-pyran-2-yloxy)-2,3- dihydrobenzo imidazol-l-ylmethyl]-cyclohexanecarboxylic acid methyl ester.
Figure imgf000075_0001
NaH (6.5 g, 162.0 mmol) was added to a dry DMF solution (300 ml) of tra«5-4-[2-oxo-6-(tetrahydro-2H-pyran-2-yloxy)-2,3-dihydrobenzoimidazol-l- ylmethyl]-cyclohexane carboxylic acid methyl ester (21.0 g, 54.0 mmol) in a 1L four necked round bottom flask. The mixture was stirred for 1 h at rt then iodomethane (10.1 ml, 162.0 mmol) was added. The mixture was stirred for 18 h at rt and then quenched with water (500 ml) and extracted with DCM (2x500 ml). Collected organic layers were washed with water (2x500 ml) and brine (2x500 ml), dried over Na2SO+, filtered and evaporated under reduced pressure to give 18.3 g of a brown oil. This was purified by flash- chromatography with a Cy/EtOAc 2/8 mixture as eluent to give 13.1 g of the titled compound as a pale yellow foam (yield 60%).
TLC: (Cy/EtOAc 3/7) Rf = 0.41 (UV).
rr w^-4-(6-hydroxy-3-methyl-2-oxo-2,3-dihydro-benzimidazol-l- ylmethyl) cyclohexanecarboxylic acid
Figure imgf000075_0002
a solution of LiOH*H2O (4.1 g, 97.5 mmol) in water (75 ml) was added to a THF (150 ml) solution of tra«s-4-[3-methyl-2-oxo-6-(tetrahydro-2H- pyran-2-yloxy)-2,3-dihydrobenzoimidazol-l-ylmethyl]-cyclohexanecarboxylic acid methyl ester (13.1 g, 32.5 mmol) in a 500 ml one necked round bottom flask The mixture was refluxed for 2 h. The THF was evaporated under reduced pressure and HC1 (6N, 150 ml) was added. The solid was isolated by filtration redissolved in THF (300 ml) and 6M HC1 (21.0 ml, 130.0 mmol) was added. The mixture was refluxed overnight. The THF was evaporated under reduced pressure and the residue was triturated with MTBE (100 ml) and then filtered. 7.6 g (yield 77%) of the titled compound were isolated as a light grey solid.
1H NMR (DMSO) δ: 1.1 (m, 2H); 1.2(m, 2H); 1.7 (m, 3H); 1.9 (m, 2H); 2.1 (m, 1H); 3.5 (s, 3H), 3.6(dd, 2H), 6.5 (dd, 1H), 6.6 (d, 1H), 6.9(d, 1H), 9.1 (bs, 1H), 12.0 (bs, 1H).
rr w^-4-(6-Hydroxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000076_0001
tra«5-4-(6-hydroxy-3-methyl-2-oxo-2,3-dihydro-benzimidazol-l- ylmethyl)cyclo hexanecarboxylic acid (500 mg, 1.64 mmol) was dissolved in MeOH (5 ml) with H2SO4 (0.05 ml). The solution was left refluxing for 2 h. The solvent was evaporated and the residue was washed with Et2O and filtered. 470 mg of the titled compound were obtained (yield 89%).
C17H22N2O4 Mass (calculated) [318.38]; found [M+H+]=319 RT=1.09 (method f)
rr w^-4-[6-(4-Methoxy-benzyloxy)-3-methyl-2-oxo-2,3-dihydro- benzo imidazol-l-ylmethyl]-cyclohexanecarboxylic acid methyl ester
Figure imgf000077_0001
At 0°C, NaH (13 mg, 0.35 mmol) was added portionwise to a solution of tra«5-4-(6-Hydroxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l- ylmethyl)-cyclohexane carboxylic acid methyl ester (100 mg, 0.3 1 mmol) in DMF (4 ml). The mixture was left stirring for 1 h at room temperature then, l-bromomethyl-4-methoxy-benzene (0.054 ml, 0.38 mmol) was added and the mixture was stirred overnight at room temperature. Water (5 ml) was added and the solution was extracted with DCM (5 ml). The organic layer was washed with NaOH 1 N (5 ml), dried over Na2SO4, filtered and then the solvent was evaporated under reduced pressure. The crude was purified by silica column using Cyclohexane/AcOEt 1 : 1 as eluent. Obtained 85 mg of the titled compound (yield 62%).
C25H30N2O5 Mass (calculated) [438.53]; found [M+H+]=439 RT= 1.66
(method f)
rr w^-4-[6-(4-Methoxy-benzyloxy)-3-methyl-2-oxo-2,3-dihydro- benzo imidazol-l-ylmethyl]-cyclohexanecarboxylic acid
Figure imgf000077_0002
LiOH (1 1 mg, 0.49 mmol) was added to the solution of trans -A-[6- A Methoxy-benzyloxy)-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l-ylmethyl] cyclohexane carboxylic acid methyl ester (85 mg, 0.19 mmol) dissolved in THF:H2O (5 ml each) and the resulting suspension was left stirring for 16 h at 50°C. The THF was evaporated under reduced pressure, the acqueous solution was extracted with DCM (5 ml) then it was acidified with HC1 IN; the precipitated material was filtered and collected. 45 mg of the titled compound were isolated (yield 56%).
C24H28N2O5 Mass (calculated) [424.50]; found [M+H+]=425 RT=1.44 (method f)
rr w^-4-[6-(4-Methoxy-benzyloxy)-3-methyl-2-oxo-2,3-dihydro- benzo imidazol-l-ylmethyl]-cyclohexanecarboxylic acid pyridin-4-ylamide
Figure imgf000078_0001
ra«5-4-[6-(4-Methoxy-benzyloxy)-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl]-cyclohexanecarboxylic acid (45 mg, 0.11 mmol), TEA (33 μΐ,, 0.21 mmol), HATU (49 mg, 0.13 mmol) and pyridin-4ylamine (12 mg, 0.13 mmol) in DMF (5 mL) were stirred at r.t. for 16h. Water (5 mL) was added and the mixture extracted with DCM (2*5 mL). The organic layers were collected, dried over Na2SO4, filtered and the solvent removed under reduced pressure. The residue was purified by preparative HPLC (method c) to give 28 mg of the titled compound (yield 51%).
1HNMR (MeOD) δ: 0.96-1.41 (2H, m), 1.25-1.39 (2H, m), 1.59-1.87 (5H, m), 2.26-2.36 (1H, m), 3.26 (3H, s), 3.60-3.64 (2H, m), 3.72 (3H, s), 6.71-6.76 (1H, m), 6.92 (1H, d, J=8.4 Hz), 6.93 (1H, brs), 6.99 (1H, d, J=8.2 Hz), 7.37 (2H, d, J=8.4 Hz), 7.53 (2H, d, J=1.2 Hz), 8.21 (1H, brs) 8.37 (2H, brs), 10.2 (1H, brs). C29H32N4O4 Mass (calculated) [500.60]; found [M+H+]=501, RT=1.28 (method f)
EXAMPLE 7 (Method E): 5-Methoxy-l-methyl-3-{ir w^-4-[3-oxo-4- (2-oxo-butyl)-piperazine-l-carbonyl]-cyclohexylmethyl}-l,3-dihydro- benzoimidazol-2-one
5-Methoxy-l-methyl-3-[ir w^-4-(3-oxo-piperazine-l-carbonyl)-cyclo hexylmethyl]-l,3-dihydro-benzoimidazol-2-one
Figure imgf000079_0001
TEA (350 μΕ, 2.52 mmol), HATU (574 mg, 1.51 mmol) and piperazin-
2-one (151 mg, 1.51 mmol) were added to a solution of tra«s-4-(6-Methoxy-3- methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid (400 mg, 1.26 mmol) in DMF (5 mL). The reaction was stirred at r.t. for 2h. Water (5 ml) was added and the mixture was extracted with DCM (3 x 5 ml). The organic layers were collected, dried over Na2SO4 and concentrated. The residue was purified by silica column (Cyclohexane/AcOEt 1 : 1, then AcOEt/MeOH 4: 1) to give 380 mg of the titled compound (Yield 59%).
1HNMR (DMSO) δ: 1.02-1.31 (4H, m), 1.59-1.78 (5H, m), 2.51-2.56 (1H, m), 3.07-3.20 (2H, m), 3.26 (3H, s), 3.52-3.56 (1H, m), 3.59-3.63 (3H, m), 3.73 (3H, s), 3.85 (1H, bs), 4.04 (1H, bs), 6.61 (1H, dd, J= 2.4 and 8.4 Hz), 6.79 (1H, d, J= 2.4 Hz), 7.00 (1H, d, J= 8.4 Hz), 8.01-8.05 (1H, m).
C21H28N4O4 Mass (calculated) [400.48]; found [M+H+]=401, RT=1.00 (method f)
5-Methoxy-l-methyl-3-{ir w^-4-[3-oxo-4-(2-oxo-butyl)-piperazine-l- carbonyl]-cyclohexylmethyl}-l,3-dihydro-benzoimidazol-2-one
Figure imgf000080_0001
To a solution of 5-Methoxy-l-methyl-3-[tra«s-4-(3-oxo-piperazine-l- carbonyl)-cyclohexylmethyl]-l,3-dihydro-benzoimidazol-2-one (320 mg, 0.80 mmol) in dry DMF (4 ml), under N2, NaH (37 mg, 0.96 mmol) was added at 0°C. The resulting mixture was stirred for 1 h at room temperature then l-bromo-butan-2-one (0.163 mL, 1.60 mmol) was added, and the mixture was stirred for 2 h. Water (4 ml) was added and the reaction mixture was extracted with DCM (3 x 5 ml). The organic layers were collected, dried over Na2SO4, concentrated and residue was purified by silica column (100% DCM) to obtain 261 mg of titled compound (yield 70%).
C25H34N4O5 Mass (calculated) [470.57]; found [M+H+]=471, RT=1.13 (method d)
EXAMPLE 8 (Method F): rr ns-4-{2-[(2-Methoxy-ethyl)-methyl- amino]-7-methyl-8-oxo-7,8-dihydro-purin-9-ylmethyl}- cyclohexanecarboxylic acid pyridine-4-ylamide
ir w^-4-({2-[(2-Methoxy-ethyl)-methyl-amino]-5-nitro-pyrimidin-4- ylamino}-methyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000080_0002
2,4-Dichloro-5-nitro-pyrimidine (547mg, 2.82 mmol) was dissolved in THF (16 mL) and the resulting solution was cooled to -78°C. A solution of 4-aminomethyl-cyclohexanecarboxylic acid methyl ester (483 mg, 2.82 mmol) and DIPEA (0.75 mL, 4.24 mmol) in THF was added dropwise. The solution was stirred 1 h at -78°C. The reaction mixture was allowed to reach room temperature and then DIPEA (0.75 mL, 4.24 mmol) and (2-Methoxy-ethyl)- methyl-amine (0.362 mL, 3.38 mmol) were added. The mixture was stirred for 16 h. The solution was concentrated under reduced pressure and the crude material was triturated with MeOH. The solid was filtered and dried to give 502 mg of titled compound as pale yellow solid (yield 47%).
1HNMR (CDC13) δ: 1.05 (2H, dd .7=12.8 and 9.0 Hz), 1.43 (2H, dd, .7=12.8 and 9.0 Hz), 1.56 (3H, s), 1.61- 1.74 (1H, m), 1.84- 1.93 (2H, m) 1.99-2.07 (2H, m) 2.20-2.28 (2H m), 3.24 (2H, s), 3.34-3.47 (3H, m), 3.58- 3.68 (2H, m), 3.66 (2H, m), 3.81 (2H, t), 3.81 (2H, t, .7=10.8 and 4 Hz), 8.97 (1H, s)
C17H27N5O5 Mass (calculated) [381.44]; found [M+H+]=382 PvT= 1.68 (method f)
rr w^-4-{2-[(2-Methoxy-ethyl)-methyl-amino]-8-oxo-7,8-dihydro- purin-9 ylmethyl}-cyclohexanecarboxylic acid methyl ester
Figure imgf000081_0001
71ra«5-4-({2-[(2-Methoxy-ethyl)-methyl-amino]-5-nitro-pyrimidin-4- ylamino}-methyl)-cyclohexanecarboxylic acid methyl ester (502 mg, 1.31 mmol) was dissolved in MeOH (5 mL) and the solution hydrogenated using an H-CUBE apparatus (flow 1 mL, full H2) with a Pd/C cartridge. The collected solution was concentrated and the residue was dissolved in dry DCM (10 mL) under N2. TEA (0.182 mL, 1.57 mmol) was added and the solution cooled to 0°C. Triphosgene (117 mg, 0.38 mmol) was added and the reaction was stirred overnight at room temperature. H2O was added, the organic solution was separated and concentrated under reduced pressure. The crude was purified by silica column (gradient of DCM/MeOH 0-6%) to give 150 mg of the titled compound as white solid (yield 30%).
1HNMR (CDC13) δ: 1.12 (2H, dd /=12.0, 9.1 Hz), 1.41 (2H, dd, J=12.0,
9.1), 1.82 (2H, d, J=12 Hz), 1.91-1.99 (IH, m), 2.01 (2H, d, J=12 Hz), 2.27 (IH, ddt, IH, J=12 and 6.8 Hz) 3.20 (3H, s), 3.39 (3H, s), 3.62 (2H, t, J=6 Hz), 3.66 (3H, s), 3.72 (2H, d /=7.2 Hz), 3.81 (2H, t), 7.92 (IH, s)
C18H27N5O4 Mass (calculated, for the acid) [377.45]; found [M+H+]=378
RT=0.96 (method f)
rr w^-4-{2-[(2-Methoxy-ethyl)-methyl-amino]-7-methyl-8-oxo-7,8- dihydro-purin-9-ylmethyl}-cyclohexanecarboxylic acid methyl ester
Figure imgf000082_0001
ra«5-4-{2-[(2-Methoxy-ethyl)-methyl-amino]-8-oxo-7,8-dihydro- purin-9 ylmethyl}-cyclohexanecarboxylic acid methyl ester (146 mg, 0.38 mmol) was dissolved in dry DMF (15 mL) under N2 atmosphere. Cs2CO3 (189 mg, 0.58 mmol) was added and mixture was stirred for 30 min at r.t. Dimethyl sulphate (0.036 mL, 0.38 mmol) was added and the reaction was stirred 4 h. H2O and DCM were added, the organic layer was separated and concentrated under reduced pressure to give 136 mg of the titled compound as white solid (yield 91%).
1HNMR (CDC13) δ: 1.08 (2H, dd J=12.0 and 9.2 Hz), 1.36 (2H, dd, J=12.0 and 9.2 Hz), 1.62 (IH, s), 1.78 (2H, d, J=12.0 Hz), 1.85- 1.96 (IH, m), 1.92 (2H, d, .7=12.0 Hz), 2.20-2.26 (1H, m,) 3.81 (3H, s), 3.35 (3H, s), 3.37 (3H, s) 3.60 (2H, m), 3.62 (3H, s), 3.69 (2H, d J=7.2 Hz), 3.75-3.80 (2H, m), 7.79 (1H, s)
C19H29N5O4 Mass (calculated) [391.47]; found [M+H+]=392. RT=1.04 (method f)
rr w^-4-{2-[(2-Methoxy-ethyl)-methyl-amino]-7-methyl-8-oxo-7,8- dihydro-purin-9-ylmethyl}- cyclohexane lithium carboxylate
Figure imgf000083_0001
71ra«5-4-{2-[(2-Methoxy-ethyl)-methyl-amino]-7-methyl-8-oxo-7,8- dihydro-purin-9-ylmethyl}-cyclohexanecarboxylic acid methyl ester (136 mg, 0.34 mmol) was dissolved in THF/ H2O (6 mL, 1 : 1, v/v). LiOH (9 mg, 0.41 mmol) was added and the solution was stirred at room temperature overnight. The solvent was removed under reduced pressure and the lithium salt was used without further purification. Obtained 126 mg of the titled compound as white solid (yield 99%).
C18H27N5O4 Mass (calculated, for the acid) [377.45]; found [M+H+]=378.
RT=0.82 (method f) rr w^-4-{2-[(2-Methoxy-ethyl)-methyl-amino]-7-methyl-8-oxo-7,8- dihydro-purin-9-ylmethyl}-cyclohexanecarboxylic acid pyridine-4- ylamide
Figure imgf000084_0001
ra«5-4-{2-[(2-Methoxy-ethyl)-methyl-amino]-7-methyl-8-oxo-7,8- dihydro-purin-9-ylmethyl}-cyclohexane lithium carboxylate (126 mg, 0.33 mmol) was dissolved in DMF (1 mL) then TEA (0.054 mL, 0.39 mmol) and HATU (150 mg, 0.39 mmol) were added. The solution was stirred for 30 min, then 4-aminopyridine (36 mg, 0.39 mmol) was added and the resulting solution was stirred over the weekend. The reaction mixture was concentrated under reduced pressure. The crude was dissolved in MeOH and passed through silica-NH2 cartridge eluting with MeOH. The solution was concentrated and the residue was purified by preparative HPLC (method c) obtaining 26 mg of titled compound as white solid (yield 17%).
1HNMR (DMSO) δ: 1.03 (2H, dd .7=10.8 and 6.0 Hz), 1.32 (2H, dd, .7=10.8 and 6.0 Hz), 1.63- 1.71 (2H, m), 1.76-1.87 (3H, m), 2.23-2.35 (1H, m), 3.23-3.25 (5H, s), 3.46-3.60 (10H, m), 3.66-3.77 (2H, m), 7.52 (2H, d 7=8.0 Hz), 7.69 (1H, s), 8.35 (2H, dd).
C23H31N7O3 Mass (calculated) [453.55]; found [M+H+]=454.6
RT=0.72 (method f)
EXAMPLE 9 (Method Gl): rr w y-4-(l-Methyl-2,5-dioxo-l,2,4,5- tetrahydro-imidazo[4,5-b]pyridin-3-ylmethyl)-cyclohexanecarboxylic acid pyridazin-4-ylamide
rr w^-4-(l-Methyl-2,5-dioxo-l,2,4,5-tetrahydro-imidazo[4,5- b]pyridin-3-ylmethyl)-cyclohexanecarboxylic acid
Figure imgf000085_0001
A suspension of tra«s-4-(5-Methoxy- l-methyl-2-oxo- l,2-dihydro- imidazo[4,5-b]pyridin-3-ylmethyl)-cyclohexanecarboxylic acid (0.500 g, 1.57 mmol) and Nal (704 mg, 4.70 mmol) in CH3CN (10 mL) was heated at 80°C into a pressure tube then chlorotrimethylsilane (1.02 g, 9.40 mmol) was added and the mixture was stirred at 100°C 2 h. The solvent was removed under reduced pressure, and the residue was washed with IN HC1 ( 10 mL) and DCM (10 mL). Obtained 454 mg of the titled compound as red-brown solid (yield 95%).
C 15H19N3O4 Mass (calculated) [305.34]; found [M+H+]=306, RT=0.80 (method f)
7 «s,-4-(l-Methyl-2,5-dioxo-l,2,4,5-tetrahydro-imidazo [4,5- b]pyridin-3-ylmethyl)-cyclohexanecarboxylic acid pyridazin-4-ylamide
Figure imgf000085_0002
ra«5-4-(l-Methyl-2,5-dioxo- l,2,4,5-tetrahydro-imidazo[4,5-b]pyridin- 3-ylmethyl)-cyclohexanecarboxylic acid (100 mg, 0.33 mmol) was dissolved in DMF (1 mL) then TEA (91 μ mL, 0.39 mmol), HATU ( 149 mg, 0.39 mmol) and 4 aminopyridazine (37.4 mg, 0.39 mmol) were added and the mixture was stirred at r.t. overnight. The reaction mixture was concentrated under reduced pressure and crude was purified by silica column (AcOEt/MeOH 9: 1) then by preparative HPLC (method b) to give 21 mg of the titled compound (yield 17%).
1HNMR (CD3OD) δ: 1.13-1-23 (2H, m), 1.44-1.54 (2H, m), 1.78-1.81 (2H, m), 1.94-2.05 (3H, m), 2.35-2.44 (IH, m), 3.39 (3H, s), 3.76 (2H, d, J=7.2 Hz), 6.39 (IH, d, J=8.0 Hz), 7.36 (IH, d, J=8.0 Hz), 8.05-8.08 (IH, m), 8.93-8.95 (IH, m), 9.23-9.24 (IH, m).
C19H22N6O3Mass (calculated) [382.43]; found [M+H+]=383. PvT=0.76 (method f)
EXAMPLE 10 (Method G): 7> ns-4-[5-(3-Methoxy-benzyloxy)-l- methyl-2-oxo-l,2-dihydro-imidazo[4,5-b]pyridin-3-ylmethyl]-cyclohexane carboxylic acid pyridin-4-ylamide
rr w^-4-(l-Methyl-2,5-dioxo-l,2,4,5-tetrahydro-imidazo[4,5- b]pyridin-3-ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000086_0001
ra«5-4-(l-Methyl-2,5-dioxo- l,2,4,5-tetrahydro-imidazo[4,5-b]pyridin- 3-ylmethyl)-cyclohexanecarboxylic acid (750 mg, 2.46 mmol) was suspended in HCI 1.25 M solution in MeOH (15 mL) and stirred at 50°C for 3h. The solvent was removed under reduced pressure to give 780 mg of titled compound (yield 99%).
1HNMR (CDC13) δ: 1.10-1.20 (2H, m), 1.30-1.40 (2H, m), 1.72-1.77 (2H, m), 1.87-1.98 (3H, m), 2.19-2.26 (IH, m), 3.40 (3H, s), 3.58 (3H, s), 3.80-3.82 (2H, m), 6.53 (IH, m), 7.36-7.38 (IH, m).
C16H21N3O4 Mass (calculated) [319.36]; found [M+H+]=320. RT=1.03 (method f)
rr w^-4-[5-(3-Methoxy-benzyloxy)-l-methyl-2-oxo-l,2-dihydro- imidazo[4,5-b]pyridin-3-ylmethyl]-cyclohexanecarboxylic acid methyl ester
Figure imgf000087_0001
To a suspension of tra«s-4-(l-Methyl-2,5-dioxo- l,2,4,5-tetrahydro- imidazo[4,5-b]pyridin-3-ylmethyl)-cyclohexanecarboxylic acid methyl ester (100 mg, 0.31 mmol) in 2-butanone (2 mL), K2CO3 (87 mg, 0.63 mmol) and 3- methoxy benzylbromide (189 mg, 0.94 mmol) were added and the mixture was stirred at 60°C overnight. The solvent was concentrated under reduced pressure and the crude was dissolved in DCM (3ml) and washed with water (3 ml). The organic phase was dried over Na2SO4 and concentrated. The crude was purified by silica column eluting with Cyclohexane/AcOEt 2: 1. Obtained 120 mg of the titled compound (yield 88%).
1HNMR (CDC13) δ: 0.92-1.03 (2H, m), 1.23-1.33 (2H, m), 1.65-1.69 (2H, m), 1.77-1.89 (3H, m), 2.11-2.20 (1H, m), 3.32 (3H, s), 3.58 (3H, s), 3.68-3.69 (2H, m), 3.74 (3H, s), 5.26 (2H, s), 6.43-6.45 (1H, m), 6.75-6.78 (1H, m), 6.92-6.96 (2H, m), 7.05-7.07 (1H, m), 7.19-7.23 (1H, m).
C24H29N3O5 Mass (calculated) [439.52]; found [M+H+]=440.
RT=1.72 (method f) rr w^-4-[5-(3-Methoxy-benzyloxy)-l-methyl-2-oxo-l,2-dihydro- imidazo[4,5-b]pyridin-3-ylmethyl]- cyclohexyl lythium carboxylate
Figure imgf000088_0001
71ra«5-4-[5-(3-Methoxy-benzyloxy)- l-methyl-2-oxo- l,2-dihydro- imidazo[4,5-b]pyridin-3-ylmethyl]-cyclohexanecarboxylic acid methyl ester (120 mg, 0.27 mmol) was dissolved in THF (2 mL). A solution of LiOH (7.2 mg, 0.30 mmol) in H2O (1 mL) was added and the solution was stirred overnight. The solution was concentrated under reduced pressure to afford the titled compound ( 126 mg, yield 99%).
C23H26N3O5Li. Mass (calculated) [425.49]; found [M+H+]=426. RT=1.50 (method f)
Trans -4-[5-(3-Methoxy-benzyloxy)-l-methyl-2-oxo-l,2-dihydro- imidazo[4,5-b]pyridin-3-ylmethyl]-cyclohexanecarboxylic acid pyridin-4- ylamide
Figure imgf000088_0002
ra«5-4-[5-(3-Methoxy-benzyloxy)- l-methyl-2-oxo- l,2-dihydro- imidazo[4,5-b]pyridin-3-ylmethyl]-cyclohexyl lithium carboxylate (1 15 mg, 0.27 mmol) was dissolved in DMF (1 mL). TEA (0.032 mL, 0.39 mmol), HATU (123 mg, 0.32 mmol) and 4 aminopyridine (30.5 mg, 0.32 mmol) were added, the resulting solution was stirred at r.t. overnight. The mixture was concentrated under reduced pressure, crude was dissolved in DCM (3 mL) and the solution was washed with Na2CO3 (2 mL, 0.4 M). The organic phase was separated, dried over Na2SO4, filtered and concentrated. The residue was purified on silica column using DCM/MeOH (95:05) as eluent to afford 80 mg of the titled compound (yield 59%).
1HNMR (DMSO) δ: 0.95-1.09 (2H,m), 1.25-1.38 (2H, m), 1.59-1.71 (2H, m), 1.71-1.86 (3H, m), 2.21-2.33 (1H, m), 3.29(3H, s), 3.64 (2H, d, J=7.4 Hz), 3.72 (3H, s), 6.53 (1H, d, J=8.4 Hz), 6.84 (1H, dd, J=8.4 and 1.0 Hz), 6.98 (2H, s), 7.27 (1H, t, 7.6 Hz), 7.54 (2H, d, J=8.4 Hz), 7.54 (2H, d, J=6.4 Hz), 8.36 (2H, d, J=6.4 Hz), 8.35 (2H, d, J=6.4 Hz), 10.71 (1H, brs).
C28H31N5O4 Mass (calculated) [501.59]; found [M+H+]= 502, RT= 1.21 (method f)
EXAMPLE 11 (Method H2): 5-Methoxy-l-methyl-3-{trans 4-[5-(l- methyl-3-trifluoromethyl-lH-pyrazol-4-yl)-[l,3,4]oxadiazol-2-yl]- cyclohexylmethyl}-l,3-dihydro-benzoimidazol-2-one
rr w^-N'-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l-ylmethyl)-cyclohexanecarboxylic acid hydrazide
Figure imgf000089_0001
ra«5-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l- ylmethyl) cyclohexanecarboxylic acid (600 mg, 1.9 mmol), HATU (860 mg, 2.3 mmol), TEA (0.31 mL, 2.3 mmol) and hydrazinecarboxylic acid tert-butylester (110 mg, 0.83 mmol) were dissolved in DMF (2 mL) and the mixture was left stirring for 3 h at r.t. The solvent was removed in vacuo and the crude was washed with MeOH to give 610 mg of the boc protected intermediate. The solid was dissolved in DCM (10 mL) and HC1 2M in Et2O was added slowly. The solution was left stirring at r.t. overweekend. The precipitate was filtered and washed with Et2O (3 x 5mL) to give the titled compound as a pale pink solid. (460 mg, yield 72%).
1HNMR (DMSO) δ: 1.00-1.10 (2H, m), 1.26-1.36 (2H, m), 1.62-1.66 (2H, m), 1.72-1.75 (3H, m), 2.18-2.25 (IH, m), 3.27 (3H, s), 3.64 (2H, d, J=8.0Hz)), 3.74 (3H, s), 6.63 (IH, dd, J=8.0 and 1.6 Hz), 6.83 (IH, d, J=1.6 Hz), 7.01 (d, IH, J=8.0 Hz), 10.29, (2H, bs), 10.88 (IH, s)
C17H24N4O3 Mass (calculated) [332.41]; found [M+H+]=333, RT=0.88 (method f)
l-Methyl-3-trifluoromethyl-lH-pyrazole-4-carboxylic acid N'-[trans -4-(6-methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarbonylj-hydrazide
Figure imgf000090_0001
ra«5-N'-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cycl ohexanecarboxylic acid hydrazide (180 mg, 0.49 mmol), HATU (223 mg, 0.59 mmol), TEA (0.15 mL, 1.08 mmol) and 3-(trifluoromethyl)-lH-pyrazol-4-carboxylic acid (114 mg, 0.59 mmol) were dissolved in DMF (2 mL) and the mixture was left stirring overnight at r. . The solvent was removed in vacuo and the crude was washed with MeOH to give the titled compound (75 mg, yield 33%).
1HNMR (DMSO) δ: 1.00-1.10 (2H, m), 1.27-1.37 (2H, m), 1.63-1.66 (2H, m), 1.73-1.76 (3H, m), 2.13-2.20 (IH, m), 3.27 (3H, s), 3.64 (2H, d, J=8.0 Hz), 3.74 (3H, s), 3.95 (3H, s), 6.62 (IH, dd, J=8.0 and 1.6 Hz), 6.85 (IH, d, J=1.6 Hz), 7.01 (IH, d, J=8.0 Hz) 8.32 (IH, s), 9.77 (IH, bs), 10.06 (IH, bs). C22H25F3N6O4 Mass (calculated) [508.50]; found [M+H+]=509, RT=1.17 (method f)
5-Methoxy-l-methyl-3-{trans -4-[5-(l-methyl-3-trifluoromethyl-lH- pyrazol-4-yl)-[l,3,4]oxadiazol-2-yl]-cyclohexylmethyl}-l,3-dihydro- benzoimidazol-2-one
Figure imgf000091_0001
l-Methyl-3-trifluoromethyl- lH-pyrazole-4-carboxylic acid N'-[trans -4- (6-methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)cyclohexane carbonyl]-hydrazide (154 mg, 0.30 mmol), DMAP (185 mg, 0.97 mmol), tosylchloride (92.5 mg, 0.49 mmol) were mixed in a microwave tube and irradiated at 140 °C for 15 minutes. The crude was dissolved in DCM (10 mL), washed with NaOH IN (10 mL) and then with HC1 IN (10 mL). The organic layers were collected, concentrated under reduced pressure and the crude purified by reverse phase chromatography using H2O:CH3CN as eluents with a gradient 05:95 to 95 :05 and with 0.1% formic acid as phase modifier. The titled compound was isolated as a powder (43 mg yield 29%).
1HNMR (DMSO) δ: 1.21 (2H, dd, J= 12.4 and 3.6 Hz), 11.48 (2H, dd, 12.4 and 3.6 Hz), 1.72 (2H, d, .7=12.6 Hz), 1.78-1.87 (IH, m), 2.01 (2H, d, .7=12.6 Hz), 2.88-2.98 (IH, m), 3.27 (3H, s), 3.68 (2H, d, J=7.4 Hz)), 3.75 (3H, s), 3.998 (3H, s), 6.63 (IH, dd, J=8.2 and 2.4 Hz), 6.85 (IH, d, J=2.4 Hz), 7.02 (IH, d, J=8.2 Hz) 8.69 (IH, s).
C23H25F3N6O3 Mass (calculated) [490.49]; found [M+H+]=491, RT= 1.46 (method f)
EXAMPLE 12 (Method HI): 3-{ Trans 4-[5-(l-tert-Butyl-5-methyl- 2H-pyrazol-3-yl)-[l,3,4]oxadiazol-2-yl]-cyclohexylmethyl}-5-methoxy-l- methyl-l,3-dihydro-benzoimidazol-2-one.
l-tert-Butyl-5-methyl-lH-pyrazole-3-carboxylic acid N'-[fr ns-4-(6- methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexane carbonylj-hydrazide
Figure imgf000092_0001
ra«5-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l- ylmethyl) cyclohexanecarboxylic acid (190 mg, 1.5 mmol), HATU (580 mg, 1.5 mmol), TEA (0.73 mL, 1.5 mmol) and l-tert-Butyl-lH-pyrazole-3- carboxylic acid hydrazide (250 mg, 1.3 mmol) were dissolved in DMF (7 mL) and the mixture was left stirring overnight at r.t. The solvent was removed in vacuo and the crude dissolved in MeOH (1 mL). The titled compoud was purified by reverse phase chromatography using H2O:CH3CN as eluents with a gradient 05 :95 to 95 :05 and with 0.1% formic acid as phase modifier. The titled compound was isolated as a pale yellow solid (242 mg, yield 38%).
1HNMR (DMSO) δ: 1.00-1.10 (2H, m), 1.27-1.37 (2H, m), 1.57-1.67 (11H, m), 1.73-1.76 (3H, m), 2.13-2.20 (1H, m), 2.42 (3H, s), 3.27 (3H, s), 3.64 (2H, d, J=8.0 Hz)), 3.74 (3H, s), 6.43 (1H, s), 6.62 (1H, d, J=8.0 Hz), 6.85 (1H, d, J=0.6 Hz), 7.01 (1H, d, J=8.0 Hz) 9.57 (1H, s), 9.65 (1H, s).
C26H36N6O4 Mass (calculated) [496.61]; found [M+H+]=497, RT=1.32 (method f) 3-{trans 4-[5-(l-tert-Butyl-5-methyl-2H-pyrazol-3-yl)- [l,3,4]oxadiazol-2-yl]-cyclohexylmethyl}-5-methoxy-l-methyl-l,3-dihydro- benzoimidazol-2-one
Figure imgf000093_0001
1 -tert-Butyl-5 -methyl- lH-pyrazole-3-carboxylic acid N'-[tra«5-4-(6- methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarbonyl]-hydrazide,(240mg, 0.48 mmol) DMAP (296 mg, 2.42 mmol) tosylchloride (230 mg, 1.21 mmol) were mixed in a microwave tube and irradiated at 140 C for 15 minutes twice. The crude was dissolved in DCM (10 mL), washed with NaOH IN (10 mL), and then with HC1 IN (10 mL). The organic layers were collected, concentrated and purified by reverse phase chromatography using H2O:CH3CN as eluents with a gradient 05:95 to 95 :05 and with 0.1% formic acid as phase modifier. The titled compound was isolated as a powder (47 mg, yield 20%).
1HNMR (DMSO) δ: 1.15-1.26 (2H, m), 1.40-1.51 (2H, m), 1.59 (9H, s), 1.70-1.73 (2H, m), 1.82-1.88 (1H, m), 2.06-2.09 (2H, m), 2.88-2.96 (1H, m), 3.28 (3H, s), 3.68 (2H, d, J=8.0 Hz), 3.75 (3H, s), 6.62-6.64 (2H, m), 6.85-6.86 (1H, m), 7.00-7.03 (1H, m).
C26H34N6O3 Mass (calculated) [478.60]; found [M+H+] =479,
PvT=3.68 (method c) EXAMPLE 13 (Method I): 5-Methoxy-l-methyl-3-[fr ns-4-(5- pyridin-4-yl-2H-pyrazol-3-yl)-cyclohexylmethyl]-l,3-dihydro- benzoimidazol-2-one
rr w^-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid methoxy-methyl-amide
Figure imgf000094_0001
ra«5-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l- ylmethyl)-cyclohexanecarboxylic acid (1.5 g, 4.72 mmol) was dissolved in DMF (10 ml). HATU (2.15g, 5.66 mmol), TEA (1.57 ml, 11.32 mmol) and N,O dimethyl hydroxylamine hydrochloride (552 mg, 5.67 mmol) were added and the mixture was stirred at r.t. overnight. The solvent was removed under reduced pressure and the crude was dissolved in 20 ml of DCM and the solution was washed with H2O (50 ml), Na2CO3 (0.4 M, 50 ml) and then with IN HC1 (50 ml). The organic phase was dried over Na2SO4, filtered and the solvent removed. The titled compound was purified by reverse phase chromatography using H2O:CH3CN as eluents with a gradient 05:95 to 95:05 and with 0.1% formic acid as phase modifier. The titled compound was isolated as a powder (1.40 g, yield 82%).
1HNMR (DMSO) δ: 1.02-1.12 (2H, m), 1.19-1.29 (2H, m), 1.60-1.79
(5H, m), 2.55-2-62 (IH, m), 3.03 (3H, s), 3.26 (3H, s), 3.62-3.63 (5H, m), 3.73 (3H,s), 6.61 (IH, dd, J=8.0 and 3.0 Hz), 6.82 (IH, d, J=3.0 Hz), 6.99 (IH, d, J=8.0 Hz)
C19H27N3O4 Mass (calculated) [361.44]; found [M+H+] =362, RT= 1.24 (method f) 3-(ir w^-4-Acetyl-cyclohexylmethyl)-5-methoxy-l-methyl-l,3- dihydro-benzoimidazol-2-one
Figure imgf000095_0001
MeLi (2.8 mL, 1.6 M in Et2O) was added to a solution of tra«5-4-(6-
Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarboxylic acid methoxy-methyl-amide (1.15 g, 3.2 mmol) in anhydrous THF (6 mL) under N2 at -78 °C. After 90 minutes the solution was allowed to reach r.t. and the solvent was removed under reduced pressure. The crude was dissolved in DCM (15 ml) and washed with brine (10 ml). The organic layer was collected, dried over Na2SO4, filtered and the solvent removed under reduced pressure. The crude was purified by silica column using 88: 12 to 0: 100 Cyclohehane/AcOEt. The titled compound was isolated as a white solid (860 mg, yield 85%).
HNMR (DMSO) δ: 0.99-1.15 (4H, m), 1.62-1.73 (3H, m), 1.80-1.83
(2H, m), 2.05 (3H, s), 2.23-2-30 (IH, m), 3.26 (3H, s), 3.63 (2H, d, J=8.0 Hz), 3.73 (3H, s), 6.61 (IH, dd, J=8.0 and 3.0 Hz), 6.82 (IH, d, J=3.0 Hz), 7.00 (IH, d, J=8.0 Hz).
C18H24N2O3 Mass (calculated) [316.40]; found [M+H+] =317, RT= 1.30 (method f) l-[ir w^-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexyl]-3-pyridin-4-yl-propane-l,3-dione
Figure imgf000096_0001
CDI (154 mg, 0.95 mmol), was added to a stirred suspension of isonicotinic acid (117 mg, 0.95 mmol) in anhydrous THF (2 ml). The mixture was stirred for 1 h until complete dissolution. In a separated round bottom flask LiHMDS (1.04 ml, 1.04 mmol) was added to a solution of 3-{trans 4-Acetyl-cyclohexylmethyl)-5-methoxy-l-methyl-l,3-dihydro-benzoimidazol- 2-one (300 mg, 0.95 mmol) in anhydrous THF (2 mL) at -78°C under nitrogen. The mixture was left to react for 30 minutes. Finally the CDI activated isonicotinic acid solution was added and the resulting mixture was left stirring for 16 h at r. . Water was added, the THF was evaporated under reduced pressure and DCM was added. The organic phases were separated, dried on Na2SO4, filtered, and the solvent evaporated. The residue was purified by silica column using as eluent first Cyclohexane/AcOEt (gradient 88: 12 to 0: 100) then 1 : 1 AcOEt/MeOH. The titled compound was isolated as an oil (120 mg, yield 59%).
C24H27N3O4 Mass (calculated) [421.50]; found [M+H+]=422, RT= 1.47 (method f) 5-Methoxy-l-methyl-3-[ir w^-4-(5-pyridin-4-yl-2H-pyrazol-3-yl)- cyclohexylmethyl]-l,3-dihydro-benzoimidazol-2-one
Figure imgf000097_0001
Hydrazine monohydrate (0.017 ml, 0.35 mmol) was added to a stirred solution of -l-[tra«5-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- 1 -ylmethyl)-cy clohexyl] -3 -pyridin-4-yl-propane- 1 , 3 -dione (120 mg, 0.29 mmol) in EtOH (2 mL). The resulting mixture was left stirring for 16 h at 70 °C. The solvent was evaporated, and the residue was purified by SCX (DCM-MeOH 1 : 1, then 2.0 N NH3 in MeOH). The solvent was removed under reduced pressure and the residue was dissolved in DCM (10 ml) and then washed Na2CO3 0.4 M. The organic layer was separated, dried over Na2SO4, filtered, and the solvent removed. The titled compound was isolated as a powder (58 mg yield 48%).
1HNMR (DMSO) δ: 0.98-1.13 (2H, m), 1.23-1.30 (2H, m), 1.56-1.66
(2H, m), 1.67- 1.81 (1H, m), 1.82-1.90 (2H, m), 2.16-2-27 (1H, m), 3.28 (3H, s), 3.64-3.72 (2H, m), 3.74 (3H, s), 6.62 (1H, dd, J=8.4 and 2.0 Hz), 6.84 (1H, d, J=2.0 Hz), 6.98 (1H, d, J=8.4 Hz)
C24H27N5O2 Mass (calculated) [417.52]; found [M+H+] =418, RT= 1.00 (method f) EXAMPLE 14 (Method LI): 3-[trans-4-(4-Acetyl-piperazine-l- carbonyl)-cyclohexylmethyl]-5-ethynyl-l-methyl-l,3-dihydro- benzoimidazol-2-one
rr w^-4-(6-Bromo-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000098_0001
Mel (1. 1 mL, 17.32 mmol) was added dropwise to a suspension of trans-A-{6 bromo-2-oxo-2,3-dihydro-benzoimidazol- 1-ylmethyl)- cyclohexanecarboxylic acid methyl ester (4.7 g, 13.32 mmol) in DMF (10 mL) containing K2CO3 (3.99 g, 17.32 mmol). The reaction mixture was stirred at r.t. 2h. The crude was concentrated under reduced pressure. The residue was dissolved in DCM (20 mL) and washed with water (2x20 mL). The organic layer was separated, dried over Na2SO4 and concentrated to give 5.0 g of the titled compound as a white solid (yield 85%).
1HNMR (CDC13) δ: 1.05- 1. 16 (2H, m), 1.33- 1.44 (2H, m), 1.77- 1.89 (3H, m), 1.97-2.02 (2H, m), 2.21-2.29 (1H, m), 3.39 (3H, s), 3.64 (3H, s), 3.67 (2H, d, J= 8 Hz), 6.83 (1H, d, J= 8.0 Hz), 7.08 (1H, d, J= 2.0 Hz), 7.20 ( 1H, dd, J= 8.0 and 2.0 Hz). rr w^-4-(3-Methyl-2-oxo-6-trimethylsilanylethynyl-2,3-dihydro- benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000099_0001
TEA (20 mL), ethinyltrimethylsilane (0.335 g, 3.41 mmol), Cul (50 mg,
0.26 mmol) and Pd(PPh3)2Cl2 (184 mg, 0.26 mmol) were added to trans-4-(6- Bromo-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l-ylmethyl)- cyclohexanecarboxylic acid methyl ester (1.0 g, 2.62 mmol) and the mixture was stirred at 100°C overnight. The mixture was concentrated under reduced pressure, AcOEt (20 mL) was added and the organic solution was washed with water (10 mL). The organic phase was dried over Na2SO4 filtered and concentrated. The crude was purified by silica column using Cyclohexane/AcOEt 1 : 1 as eluent system. Obtained 0.835 g of the titled compound solid (yield 80%).
1HNMR (CDC13) δ: 1.04- 1.13 (2H, m), 1.31-1.41 (2H, m), 1.74-1.87
(3H, m), 1.94- 1.98 (2H, m), 2.20-2.26 (1H, m), 3.38 (3H, s), 3.62 (3H, s), 3.65 (2H, d, J= 7.6 Hz), 6.84-6.86 (1H, m), 7.01 (1H, bs), 7.20-7.23 (2H, m).
rr w^-4-(6-Ethynyl-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid
Figure imgf000099_0002
Li(OH) (150 mg, 6.28 mmol) was added to a stirred solution of Trans- 4-(3-Methyl-2-oxo-6-trimethylsilanylethynyl-2,3-dihydro-benzoimidazol- l- ylmethyl)-cyclohexanecarboxylic acid methyl ester (835 mg, 2.09 mmol) in a mixture of THF/Water 2: 1 (15 mL). The reaction was heated at 60°C 16 hours. The reaction mixture was concentrated under reduced pressure and the acqueous solution was acidified to pH 3 with HCl 6 N to afford a dark brown solid that was filtered and dried. Obtained 630 mg of the titled compound (yield 97%).
C18H20N2O3 Mass (calculated) [312.37]; found [M+H+]=313 RT=1.24 (method f)
3-[ir w^-4-(4-Acetyl-piperazine-l-carbonyl)-cyclohexylmethyl]-5- ethynyl-l-methyl-l,3-dihydro-benzoimidazol-2-one
Figure imgf000100_0001
ra«5-4-(6-Ethynyl-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid (60 mg, 0.19 mmol) was dissolved in DMF (2 mL) then TEA (0.032 mL, 0.23 mmol), HATU (73 mg, 0.19 mmol) and 1-acetylpiperazine (0.26 mL, 0.23 mmol) were added. The solution was stirred for 16 h then it was concentrated under reduced pressure. The crude was purified by silica column eluting with AcOEt/MeOH 9: 1. to afford the titled compound that was further purified by HPLC (method c). Obtained 20 mg of the titled compound as white solid (yield 25%).
1HNMR (CDC13) δ: 1.10- 1.20 (2H, m), 1.49-1.59 (2H, m), 1.75-1.85 (4H, m), 1.87-1.97 (1H, m), 2.12 (3H, s), 2.41-2.47 (1H, m), 3.06 (1H, s), 3.40-3.50 (7H, m) 3.58-3.62 (4H, m), 3.72 (2H, d), J= 8.0 Hz), 6.91 (1H, d, J= 8.0 Hz), 7.09 (1H, d, J= 1.6 Hz), 7.26-7.29 (1H, m).
C24H30N4O3 Mass (calculated) [422.53]; found [M+H+]=423 RT=1.15 (method f)
EXAMPLE 15 (Method L2): 3-[fr ns-4-(4-Acetyl-piperazine-l- carbonyl)-cyclohexylmethyl]-5-(2-methoxy-ethylamino)-l-methyl-l,3- dihydro-benzoimidazol-2-one
rr w^-4-[3-Methyl-2-oxo-6-(4,4,5,5-tetramethyl-[l,3,2]dioxaborolan- 2-yl)-2,3-dihydro-benzoimidazol-l-ylmethyl]-cyclohexanecarboxylic acid methyl ester
Figure imgf000101_0001
ra«5-4-(6-Bromo-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l- ylmethyl)-cyclohexanecarboxylic acid methyl ester (1.0 g, 2.62 mmol), bis(pinacolato)diboron (0.733 g, 2.89 mmol), Pd(dppf)Cl2 (0.214 g, 0.26 mmol), CH3COOK (0.90 g, 9.2 mmol) were mixed together, then dioxane (10 mL) was added. The mixture was left stirring at 90°C 4 h. AcOEt ( 15 mL) and water (15 mL) were added. The organic phase was separated, dried over Na2SO4 and concentrated under reduced pressure. The residue was purified by silica column using Cyclohexane/AcOEt 4: 1 as eluent system. Obtained 1.08 g of the titled compound (yield quantitative).
C23H33BN2O5 Mass (calculated) =428.34, found [M+H+]= 429, RT 1.74 (method f) rr w^-4-[6-(2-Methoxy-ethylamino)-3-methyl-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethyl]-cyclohexanecarboxylic acid methyl ester
Figure imgf000102_0001
ra«5-4-[3-Methyl-2-oxo-6-(4,4,5,5-tetramethyl-[ l,3,2]dioxaborolan-2- yl)-2, 3 -dihydro-benzoimidazol- 1 -ylmethyl] -cy clohexanecarboxylic acid methyl ester (0.8 g, 1.87 mmol), Cu(Ac)2 (0.5 lg, 2,8 mmol), TEA (0.52 mL, 3.74 mmol) and 2-methoxyethylamine (0.65 mL, 7.47 mmol) in DCM (10 ml) were stirred at r.t. over weekend. Water (10 ml) was added. The organic layer was dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified on silica column using Cyclohexane/AcOEt 3 :7 as eluent system. Obtained 150 mg of the titled compound (yield 21%).
1HNMR (CDC13) δ: 1.02- 1. 12 (2H, m), 1.28- 1.39 (2H, m), 1.75- 1.85 (3H, m), 1.93- 1.97 (2H, m), 2. 17-2.25 (1H, m), 3.25 (2H, t, J= 10.4 Hz), 3.32 (3H, s), 3.37 (3H, s), 3.59-3.63 (7H, m), 6.28 (1H, d, J= 2.0 Hz), 6.37 ( 1H, dd, J= 8.4 and 2.0 Hz), 6.75 (1H, d, J= 8.4 Hz).
rr w^-4-[6-(2-Methoxy-ethylamino)-3-methyl-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethyl]-cyclohexanecarboxylic acid
Figure imgf000102_0002
To a solution of tra«s-4-[6-(2-Methoxy-ethylamino)-3-methyl-2-oxo- 2,3-dihydro-benzoimidazol- l-ylmethyl]-cyclohexanecarboxylic acid methyl ester (100 mg, 0.27 mmol) in THF (2 mL), LiOH (19 mg, 0.80 mmol) in water (1 mL) was added. The mixture was left stirring for 3 h then it was concentrated under reduced pressure. HC1 IN (2mL) was added and the solution was extracted with DCM (2 xlO mL). Organic layers were collected and concentrated to give 65 mg of the titled compound as white solid (yield 67%).
C19H27N3O4 Mass (calculated) [361.44]; found [M+H+]=361 RT=0.88 (method f)
3-[ir w^-4-(4-Acetyl-piperazine-l-carbonyl)-cyclohexylmethyl]-5-(2- methoxy-ethylamino)-l-methyl-l,3-dihydro-benzoimidazol-2-one
Figure imgf000103_0001
ra«5-4-[6-(2-Methoxy-ethylamino)-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl]-cyclohexanecarboxylic acid (65 mg, 0.18 mol) was dissolved in DMF (2 mL); TEA (0.034 mL, 0.22 mmol), HATU (125 mg, 0.33 mmol) and 1-Acetylpiperazine (28 mg, 0.22 mmol) were added. The solution was stirred overnight then it was concentrated under reduced pressure. The crude was purified first by silica column (AcOEt/MeOH 9: 1) then by preparative HPLC (method c) obtaining 10 mg of the titled compound (yield 12%).
1HNMR (CDC13) δ: 1.04- 1.13 (2H, m), 1.42-1.50 (2H, m), 1.68-1.88
(5H, m), 2.05 (3H, s), 2.32-2.40 (1H, m), 3.22 (2H, t, J= 7.2 Hz), 3.29 (3H, s), 3.34 (3H, s), 3.36-3.43 (4H, m), 3.52-3.62 (8H, m), 3.90 (1H, bs), 6.25 (1H, d, J= 2.0 Hz), 6.35 (1H, dd, J= 2.0 and 8.4 Hz), 6.72 (1H, d, J= 8.4 Hz).
C25H37N5O4 Mass (calculated) [471.60]; found [M+H+]=472, RT=0.75 (method f) EXAMPLE 16 (Method L3): 3-[fr ws-4-(4-Acetyl-piperazine-l- carbonyl)-cyclohexylmethyl]-5-hydroxy-l-methyl-l,3-dihydro- benzoimidazol-2-one
rr w^-4-(6-Hydroxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000104_0001
ra«5-4-[3-Methyl-2-oxo-6-(4,4,5,5-tetramethyl-[l,3,2]dioxaborolan-2- yl)-2, 3 -dihydro-benzoimidazol- 1 -ylmethyl] -cy clohexanecarboxylic acid methyl ester (0.8 g, 1.87 mmol), was dissolved in THF (10 ml). H2O2 (0.5 ml) and CH3CO2H (0.10 ml) were added and the mixture was stirred at r.t. over weekend. The mixture was concentrated under reduced pressure then water (10 ml) and DCM (10 mL) were added. The organic layer was separated, dried over Na2SO4 and concentrated. The residue was purified by silica column using Cyclohexane/AcOEt 3 :7 as eluent system. Obtained 300 mg of the titled compound (yield 51%).
1HNMR (CDC13) δ: 1.05-1.15 (2H, m), 1.32-1.42 (2H, m), 1.77-1.88 (3H, m), 1.97-2.01 (2H, m), 2.21-2.29 (1H, m), 3.38 (3H, s), 3.65 (3H, s), 3.66 (2H, d, J= 7.2 Hz), 6.54-6.55 (1H, m), 6.56-6.59 (1H, m), 6.78-6.80 (1H, m).
C17H22N2O4 Mass (calculated) [3 18.38]; found [M+H+]=3 19
RT= 1.09 (method f) rr w^-4-(6-Hydroxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid
Figure imgf000105_0001
LiOH (19 mg, 0.80 mmol) in water (1 mL) was added to a solution of tra«5-4-(6-Hydroxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexane carboxylic acid methyl ester (85 mg, 0.27 mmol) in THF (2 mL). The mixture was left stirring for 3 h then it was concentrated under reduced pressure. HCl IN (2mL) was added and the precipitate was filtered to give 55 mg of the titled compound as white solid (yield 67%).
C16H20N2O4 Mass (calculated) [304.35]; found [M+H+]=305 RT=0.88 (method f)
3-[ir w^-4-(4-Acetyl-piperazine-l-carbonyl)-cyclohexylmethyl]-5- hydroxy-l-methyl-l,3-dihydro-benzoimidazol-2-one
Figure imgf000105_0002
ra«5-4-(6-Hydroxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol- l- ylmethyl)-cyclohexanecarboxylic acid (55 mg, 0.18 mol) was dissolved in DMF (2 mL) then TEA (30 μΐ,, 0.22 mmol), HATU (82 mg, 0.22 mmol) and 1-Acetyl-piperazine (28 mg, 0.22 mmol) were added. The solution was stirred at r.t. overnight. The solution was stirred overnight then it was concentrated under reduced pressure. The crude was purified first by silica column (AcOEt/MeOH 9: 1) then by preparative HPLC (method c) obtaining 55 mg of the titled compound (yield 74%).
1HNMR (CDC13) δ: 1. 1 1- 1.20 (2H, m), 1.48- 1.58 (2H, m), 1.75- 1.92 (5H, m), 2. 13 (3H, s), 2.41-2.47 (1H, m), 3.37 (3H, s), 3.44-3.54 (4H, m), 3.61-3.69 (6H, m), 6.55-6.56 (1H, m), 6.58-6.61 ( 1H, m), 6.77-6.79 (1H, m).
C22H30N4O4 Mass (calculated) [414.51]; found [M+H+]=415,
RT=0.84 (method f)
EXAMPLE 17 (Method L4): rr ns-4-(6-ethoxy-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethylcyclohexanecarboxylic acid pyridin-4-ylamide rr w^-4-(6-Ethoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid methyl ester
Figure imgf000106_0001
Ethyliodide (36.5 μΐ^, 0.45 mmol) was added to a suspension of trans -4- (6-Hy droxy-3 -methyl-2-oxo-2, 3 -dihydro-benzoimidazol- 1 -ylmethyl)- cyclohexanecarboxylic acid methyl ester ( 120 mg, 0.38 mmol) and K2CO3 (104 mg, 0.75 mmol) in 2-butanone (2 ml) and the mixture was left stirring at 50°C overnight. Ethyl iodide was added again (62 μΕ, 0.76 mmol) and the mixture was heated at 60°C 24 hours. The reaction mixture was concentrated under reduced pressure and the crude dissolved in DCM (5 ml) and washed with water (7 ml). The organic solution was dried over Na2SO4, filtered and filtrate concentrated to give 120 mg of the titled compound (yield 92%).
1HNMR (CDCI3) δ: 1.06- 1. 16 (2H, m), 1.32- 1.44 (5H, m), 1.78- 1.98 (3H, m), 1.96-2.01 (2H, m), 2.21-2.29 (1H, m), 3.38 (3H, s), 3.64 (3H, s), 3.67 (2H, d, J= 7.2 Hz), 4.01 (2H, q, J= 7.2 Hz), 6.57 (1H, d, J= 2.4 Hz), 6.64 (1H, dd, J= 8.4 and 2.4 Hz), 6.84 (1H, d, J= 8.4 Hz). rr w^-4-(6-ethoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid
Figure imgf000107_0001
To a solution of tra«s-4-(6-Ethoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl)-cyclohexanecarboxylic acid methyl ester (121 mg, 0.35 mmol) in THF (2 ml), LiOH (25 mg, 1.05 mmol) in water (1 mL) was added. The mixture was left stirring for 4 h. HCl IN (3mL) was added and the solution extracted with DCM (5 mL). The organic solution was dried over Na2SO4,filtered, and concentrated to give 111 mg of the titled compound as white solid (yield 96%).
C18H24N2O4 Mass (calculated) [332.40]; found [M+H+]=333 RT=1.26 (method f)
rr w^-4-(6-ethoxy-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethylcyclo hexanecarboxylic acid pyridin-4-ylamide
Figure imgf000107_0002
A mixture of tra«s-4-(6-ethoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl)-cyclohexanecarboxylic acid (55 mg, 0.18 mmol), TEA (30 μΐ,, 0.22 mmol), HATU (82 mg, 0.22 mmol) and pyridin-4ylamine (20 mg, 0.22 mmol) in DMF (2 mL) was stirred at r.t. 4h. The solution was concentrated under reduced pressure and crude was purified by silica column (AcOE MeOH 9: 1). The titled compound was dissolved in DCM (3 mL) and washed with Na2CO3 satured solution (3mL) to afford 50 mg of the titled compound (59 mg, Yield 68%).
1HNMR (MeOD) δ: 1.11- 1.21 (2H, m), 1.44 (3H, t, J= 6.8 Hz), 1.50- 1.61 (2H, m), 1.85-2.03 (5H, m), 2.23-2.29 (1H, m), 3.39 (3H, s), 3.71 (2H, d, J= 7.2 Hz), 4.05 (2H, q, J= 6.8 Hz), 6.59 (1H, d, J= 2.4 Hz), 6.66 (1H, dd, J= 2.4 and 8.4 Hz), 6.86 (1H, d, J= 8.4 Hz), 7.46-7.48 (2H, m), 7.71 (1H, bs), 8.46-8.47 (2H, m).
C21H24N4O3 Mass (calculated) [408.50]; found [M+H+]=409, RT=1.1 1 (method f)
EXAMPLE 18 (Method M): 5-Methoxy-3-{ir w^-4-[5-(4-methoxy- phenyl)-[l,2,4]oxadiazol-3-yl]-cyclohexylmethyl}-l-methyl-l,3-dihydro- benzoimidazol-2-one
rr w^-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarboxylic acid amide
Figure imgf000108_0001
A suspension of tra«s-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl)-cyclohexanecarboxylic acid (5.0 g, 15.7 mmol) and NMM (2 mL, 15.7 mmol) in THF (7 ml) was cooled to 0°C in ice bath. Isoprenylchloroformiate (1M in toluene, 15.7 mL) was added and the mixture was stirred 30 min at 0°C, then NH4OH solution (25% in water) was added and the mixture was allowed to reach r.t. and stirred for additional 2 h. AcOEt was added and the precipitate was filtered, washed with AcOEt and dried to afford 4.9 g of the titled compound as grey solid (yield 98%).
1HNMR (CDC13) δ: 1.01-1.12 (2H, m), 1.30-1.41 (2H, m), 1.75-1.85 (3H, m), 1.88- 1.91 (2H, m), 2.01-2.09 (1H, m), 3.32 (3H, s), 3.62 (2H, d, J= 8.0 Hz), 3.76 (3H, s), 5.22-5.35 (2H, m), 6.49 (1H, d, J= 4.0 Hz), 6.58 ( 1H, dd, J= 8.0 Hz, J= 4.0 Hz), 6.79 ( 1H, d, J= 8.0 Hz).
C 17H23N3O3 Mass (calculated) [3 17.39] ; found [M+H+]=3 18, RT= 1.02 (method f)
rr w^-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarbonitrile
Figure imgf000109_0001
A suspension of tra«s-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl)-cyclohexanecarboxylic acid amide (4 g, 12.6 mmol) and TEA (1 1.4 mL, 82 mmol) in DCM (80 mL) was cooled to 0°C, TFAA (2.2 mL, 15.7 mmol) was added slowly and the resulting mixture was stirred for further 2 h to reach r.t.
The organic phase was washed with water (2x 80 mL), and Na2CO3 ss
(2x 80 ml). The organic phase was dried over Na2SO4 and solvent evaporated under reduced pressure. The crude was dissolved in CH3CN (30 mL) and water (35 mL) was added dropwise under vigorous stirring. The mixture was left in an ice bath to give 2.4 g of the titled compound as a grey solid (yield 64%).
1HNMR (CDC13) δ: 1.07- 1.17 (2H, m), 1.48- 1.59 (2H, m), 1.81- 1.95 (3H, m), 2.1 1-2.14 (2H, m), 2.36- 2.43 (1H. m), 3.39 (3H, s), 3.68 (2H, d, J=8.0 Hz), 3.83 (3H, s), 6.53-6.54 (1H, m), 6.64-6.67 (1H, m), 6.85-6.87 (1H, m).
N-Hydroxy-ir w^-4-(6-methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethyl)-cyclohexanecarboxamidine
Figure imgf000110_0001
Hydroxylammine (50% wt solution in water, 0.21 Ml) was added to a solution of tra«5-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarbonitrile (500 mg, 1.67 mmol) in EtOH (10 ml). The solution was refluxed overnight then other 1,5 equivalents of hydroxylamine were added and the reaction mixture was refluxed overnight to get complete conversion.
The solvent was evaporated under reduced pressure to afford 554 mg of the titled compound (yield quantitative).
C17H24N4O3 Mass (calculated) [332.41]; found [M+H+]= 333, RT=0.83 (method f)
5-Methoxy-3-{ir w^-4-[5-(4-methoxy-phenyl)-[l,2,4]oxadiazol-3-yl]- cyclohexylmethyl}-l-methyl-l,3-dihydro-benzoimidazol-2-one
TEA (0.116 ml, 0.83 mmol), HOBT (63 mg, 0.47 mmol) and EDC chloridrate (90 mg, 0.47 mmol) were added to a stirred solution of N-hydroxy- tra«5-4-(6-methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexane carboxamidine (120 mg, 0.36 mmol) in dioxane (15 Ml) and the resulting mixture was left overnight at room temperature and then refluxed overnight. The solvent was evaporated under reduced pressure and DCM (10 Ml) was added to the crude. The organic solution was washed with water (10 Ml). The organic phase was separated, dried over Na2SO4 filtered, and concentrated. The crude was purified by preparative HPLC (method b), to give 50 mg of the titled compound (yield 31%).
1HNMR (DMSO) δ: 1.15-1.25 (2H, m), 1.39-1.49 (2H, m), 1.69-1.73 (2H, m), 1.80- 1.89 IH, m), 1.99-2.03 (2H, m), 2.72-2.80 (IH, m), 3.27 (3H, s), 3.68 (2H, d, J=8.0 Hz), 3.74 (3H, s), 3,83 (3H, s), 6.62 (IH, dd, J= 8.0 Hz, J= 2.4 Hz), 6.85 (IH, d, J=8.4 and 2.4 Hz), 7.0 (IH, d, J=8.0 Hz), 7.10-7.13 (2H, m), 7.97-8.00 (2H, m).
C25H28N4O4 Mass (calculated) [448.53]; found [M+H+]=449, RT=1.73 (method f)
EXAMPLE 19 (Method N): N-{4-[ir w^-4-(6-Methoxy-3-methyl-2- oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)-cyclohexyl]-lH-imidazol-2- yl}-acetamide
3-[ir w^-4-(2-Bromo-acetyl)-cyclohexylmethyl]-5-methoxy-l-methyl- l,3-dihydro-benzoimidazol-2-one
Figure imgf000111_0001
Oxalyl chloride (0.38 Ml, 4.53 mmol) and DMF (0.03 Ml) were added to a stirred solution of tra«s-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol- l-ylmethyl)-cyclohexanecarboxylic acid (1.2 g, 3.77 mmol) in dry DCM (30 Ml). The resulting solution was stirred 16 h at r.t. The solvent was removed under reduced pressure. The crude containing was dissolved in THF/CH3CN (8 Ml, 1 : 1 v/v) and the solution cooled to 0°C. Trimethylsilildiazomethane (2.0 M solution in Et2O, 5.7 Ml, 1 1.34 mmol) was added dropwise and the resulting mixture was allowed to warm to r.t. and stirred for 3 h. The solvent was removed under reduced pressure. Dioxane (7 Ml) was added to the crude and then HBr (48% solution in water) was slowly added. The mixture was stirred 1 h at r.t. Iced water was added and the mixture was extracted with DCM (5* 10 Ml). The organic layers were collected, dried over Na2SO4 filtered and concentrated. The residue was purified by silica column (Cyclohexane/AcOEt 95:05 to 05:95) to afford 920 mg of the titled compound (yield 62%).
1HNMR (DMSO) δ: 1.00-1.21 (4H, m), 1.62-1.65 (2H,m), 1.68-1.78 (1H, m), 1.83-1.86 (2H, m), 2.49-2.58 (1H, m), 3.26 (3H, s), 3.63 (2H, d, J= 8.0 Hz), 3.73 (3H, s), 4.44 (2H, s), 6.62 (1H, dd, J=8.0 and 2.4 Hz), 6.81 (1H, d, J=2.4 Hz), 7.00 (2H, d, J=8.0 Hz).
C18H23BrN2O3 Mass (calculated) [395.30]; found [M+H+]=395/397,
RT=1.46 (method f)
N-{4-[ir w^-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro- benzoimidazol-l-ylmethyl)-cyclohexyl]-lH-imidazol-2-yl}-acetamide
Figure imgf000112_0001
3-[tra«5-4-(2-Bromo-acetyl)-cyclohexylmethyl]-5-methoxy-l-methyl- l,3-dihydro-benzoimidazol-2-one (250 mg, 0.63 mmol) was added to a stirred solution of N-acetylguanidine (192 mg, 1.9 mmol) in DMF (10 Ml). The resulting mixture was left stirring for 2 days at r.t. The reaction mixture was concentrated under reduced pressure, the crude was dissolved in DCM (10 Ml) and washed with water (10 Ml). The organic layer was separated, dried over Na2SO4 filtered and concentrated under reduced pressure. The residue was triturated with CH3CN, the solid was filtered and dried to give 79 mg of the titled compound (yield 31%). 1HNMR (DMSO) δ: 1.06- 1.23 (4H, m), 1.62-1.658 (2H, m), 1.72-1.80 (1H, m), 1.89- 1.92 (2H, m), 1.98 (3H, s), 2.25-2.34 (1H, m), 3.27 (3H, s), 3.65 (2H, d, J= 8.0 Hz), 3.74 (3H, s), 6.35 (1H, brs), 6.62 (1H, dd, J=8.0 and 2.4 Hz), 6.83 (1H, d, J=2.4 Hz), 7.00 (2H, d, J=8.0 Hz), 10.83-11.15 (2H, m).
C21H27N5O3 Mass (calculated) [397.48]; found [M+H+]=398, RT=0.94 (method f)
EXAMPLE 20 (Method P): 5-Methoxy-l-methyl-3-[ir w^-4-(4- pyrimidin-5-yl-piperazine-l-carbonyl)-cyclohexylmethyl]-l,3-dihydro- benzoimidazol-2-one
4-[ir w^-4-(6-Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l- ylmethyl)-cyclohexanecarbonyl]-piperazine-l-carboxylic acid tert-butyl ester
Figure imgf000113_0001
CDI (993 mg, 6.12 mmol) was added to a solution of tra«5-4-(6-
Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarboxylic acid (1.5 g, 4.71 mmol) in CH3CN (12ml). The mixture was stirred at 50°C one hour then tert-butyl- 1-piperazinecarboxylate (965 mg, 5.18 mmol) was added. The mixture was refluxed 2 hours. The solvent was removed under reduced pressure and the crude was dissolved in DCM (10 ml) and washed with Na2CO3 (0.4 M solution, 5 Ml). The organic solution was washed with NH4C1 (satured solution, 2 x 5 Ml), dried over Na2SO4, filtered and concentrated to afford 2.28 g of the titled compound (yield 99%).
C26H38N4O5; Mass calculated [486.62]; found [M+H]+= 487.4 m/z; RT = 1.48 min (method f) 5-Methoxy-l-methyl-3-[fr ns-4-(piperazine-l- carbonyl)cyclohexylmethyl]-l,3-dihydro-benzoimidazol-2-one
Figure imgf000114_0001
Trifluoro acetic acid (8 ml) was added to a solution of 4-[tra«5-4-(6- Methoxy-3-methyl-2-oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)- cyclohexanecarbonyl]-piperazine-l-carboxylic acid tert-butyl ester (2.29 g, 4.70 mmol) in DCM (20 ml). The solution was stirred at room temperature overnight and then the reaction mixture was concentrated under reduced pressure. DCM (10 Ml) was added to the crude and the organic solution was washed with NaOH IN (7 Ml). The organic layer was concentrated to afford 1.82 g of the titled compound as a white foam (yield quantitative).
C21H30N4O3; Mass calculated [386.50]; found [M+H]+= 387.2 m/z; RT = 0.89 min (method f)
5-Methoxy-l-methyl-3-[ir w^-4-(4-pyrimidin-5-yl-piperazine-l- carbonyl)-cyclohexylmethyl]-l,3-dihydro-benzoimidazol-2-one
Figure imgf000114_0002
Toluene (2 Ml) was added to a mixture of Pd(Oac)2 (6.0 mg, 0.03 mol) and BINAP (16 mg, 0.03 mmol). The resulting mixture was transfer in a vial containing Cs2CO3 (252 mg, 0.78 mmol), tra«s-4-(6-Methoxy-3-methyl-2- oxo-2,3-dihydro-benzoimidazol-l-ylmethyl)-cyclohexanecarboxylic acid piperazin-l-yl ester (100 mg, 0.26 mmol) and 5-bromopyrimidine (53 mg, 0.34 mmol). The resulting mixture was heated under stirring at 90°C 6 hours. Water (3 Ml) was added, the organic phase was separated, the acqueous phase was extracted twice with DCM (2*3 mL). The organic layers were collected, dried over Na2SO4, filtered and concentrated under reduced pressure. The crude was purified by silica column to afford 55 mg of the titled compound (yield 46%).
1H NMR (CDC13) δ: 1.11- 1.22 (2H, m), 1.50-1.60 (2H, m), 1.77- 1.97 (5H, m), 2.43-2.50 (1H, s), 3.23 (4H, bs), 3.39 (3H, s), 3.65-3.72 (4H, m), 3.79 (2H, bs), 3.83 (3H, s), 6.57 (1H, d, J= 2.4 Hz), 6.66 (1H, dd, J= 8.4 and 2.4 HZ), 6.86 (1H, d, J= 8.4 Hz), 8.38 (2H, s), 8.75 (1H, s).
C25H32N6O3; Mass calculated [464.57]; found [M+H]+= 465 m/z;
RT = 1.12 min (method f)
Examples 21-188 listed in table were made according to the method of column 3 and characterised by NMR (data not shown), and HPLC-MS (columns 4, 5, 6, 7 and 8)
Table
Figure imgf000116_0001
(continued)
Figure imgf000117_0001
(continued)
Figure imgf000118_0001
(continued)
Figure imgf000119_0001
(continued)
Figure imgf000120_0001
(continued)
Figure imgf000121_0001
(continued)
Figure imgf000122_0001
Figure imgf000123_0001
(continued)
Figure imgf000124_0001
Figure imgf000125_0001
(continued)
Figure imgf000126_0001
(continued)
Figure imgf000127_0001
(continued)
Figure imgf000128_0001
(continued)
Figure imgf000129_0001
(continued)
Figure imgf000130_0001
(continued)
Figure imgf000131_0001
Figure imgf000132_0001
(continued)
Figure imgf000133_0001
(continued)
Figure imgf000134_0001
(continued)
Figure imgf000135_0001
(continued)
Figure imgf000136_0001
(continued)
Figure imgf000137_0001
(continued)
Figure imgf000138_0001
(continued)
Figure imgf000139_0001
(continued)
Figure imgf000140_0001
(continued)
Figure imgf000141_0001
(continued)
Figure imgf000142_0001
(continued)
Figure imgf000143_0001
(continued)
Figure imgf000144_0001
(continued)
Figure imgf000145_0001
(continued)
Figure imgf000146_0001
(continued)
Figure imgf000147_0001
(continued)
Figure imgf000148_0001
(continued)
Figure imgf000149_0001
(continued)
Figure imgf000150_0001
(continued)
Figure imgf000151_0001
(continued)
Figure imgf000152_0001
(continued)
Figure imgf000153_0001
(continued)
Figure imgf000154_0001
(continued)
Figure imgf000155_0001
(continued)
Figure imgf000156_0001
(continued)
Figure imgf000157_0001
(continued)
Figure imgf000158_0001
(continued)
Figure imgf000159_0001
(continued)
Figure imgf000160_0001
(continued)
Figure imgf000161_0001
(continued)
Figure imgf000162_0001
(continued)
Figure imgf000163_0001
(continued)
Figure imgf000164_0001
(continued)
Figure imgf000165_0001
(continued)
Figure imgf000166_0001
(continued)
Figure imgf000167_0001
Figure imgf000168_0001
(continued)
Figure imgf000169_0001
(continued)
Figure imgf000170_0001
(continued)
Figure imgf000171_0001
(continued)
Figure imgf000172_0001
(continued)
Figure imgf000173_0001
(continued)
Figure imgf000174_0001
Examples 1- 188, each of which constitutes a separate embodiment of this invention, display an IC50 value in the above described reporter assay falling between 35 nM and 23 μΜ. In the renilla read out, Examples 1- 188 showed a negligible effect. Moreover, selected representative compounds were assessed not to be inhibitors of the luciferase enzyme. Examples 185, 186, 153, 22, 61, 115, 72, 152, 121, 106, 147, 182, 161, 68, 92, 71, 29, 14 and 1 display an IC50 value ranging from 32 nM to 2.9 μΜ in the soft agar assay.

Claims

1. Compounds of formula I
Figure imgf000176_0001
(I)
wherein, as valence and stability permit:
any carbon-bound hydrogen atom may be substituted with a fluorine
Figure imgf000176_0002
X2 is CR3 or N;
-Y-Q is
Figure imgf000176_0003
Q is Ci-C6 linear branched or cylic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylmminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
Ri is H; F; CI; Br; OH; CN; linear branched or cyclic Ci-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy, oxazalkyloxy, azalkyloxy, dialkylamino, oxalkylamino, azalkylamino, group optionally substituted with one or more F or CN; C5-C6 aryl- or heteroarylmethylammino or C5-C6 aryl- or heterorylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups;
R2 is H or CI;
R3 is H, CI or F;
R4 is H or CI;
R5 is a Ci-C3 linear, branched or cylic alkyl group;
Rx is H; a linear, branched or cyclic Ci-C3 alkyl group;
n may be nil, 1, 2 or 3 ;
Ry is - independently from one another when n=2 or more - F; a linear, branched or cyclic Ci-C3 alkyl group; or Ry, together with the carbon atom to which it is attached, forms an oxo group.
X3 is either N, O or S;
tautomers, optical isomers and pharmaceutically acceptable salts therof; with the exception of
Figure imgf000178_0001
Figure imgf000179_0001
(l-bis)
wherein, as valence and stability permit:
carbon-bound hydrogen atom may be substituted with a fluorine atom;
Figure imgf000180_0001
X2 is CR3 or N;
-Y-Q is
Figure imgf000180_0002
Figure imgf000180_0003
Q is Ci-C6 linear branched or cyclic alkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylamminocarbonyl, oxalkylamminocarbonyl group wherein any methylene group may be substituted with an oxo group; a C5-C10 aryl or heteroaryl group optionally substituted with 1, 2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
Ri is H; F; CI; Br; OH; CN; linear, branched or cyclic Ci-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkenyl, oxalkynil, azalkenyl, azalkynyl, alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy, oxazalkyloxy, azalkyloxy, dialkylamino, oxalkylamino, azalkylamino, group optionally substituted with one or more F or CN; C5-C6 aryl- or heteroarylmethylammino or C5-C6 aryl- or heteroarylmethyloxy group where the aryl or heteroaryl moiety may optionally be substituted with one or more Ci-C3 alkyl, Ci-C3 alkoxy, halogen or CN groups;
R2 is H or CI;
R3 is H, CI or F;
R4 is H or CI;
R5 is a Ci-C3 linear, branched or cyclic alkyl group;
Rx is H; a linear, branched or cyclic Ci-C3 alkyl group;
n may be nil, 1, 2 or 3 ;
Ry is - independently from one another when n=2 or more - F; a linear, branched or cyclic Ci-C3 alkyl group; or Ry, together with the carbon atom to which it is attached, forms an oxo group;
tautomers, optical isomers and pharmaceutically acceptable salts thereof
3. The compounds of claim 1 or 2, wherein
Q is Ci-C6 linear branched or cylic allkyl, alkylcarbonyl, oxalkyl, dioxalkyl, alkylamminocarbonyl, oxalkylammmocarbonyl group wherein any methylene group may be substituted with an oxo group; a C5-C6 aryl or heteroaryl group optionally substituted with 1, 2 or 3 groups selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, Ci-C3 alkyl, Ci-C3 oxalkyl;
and wherein Xl5 X2, X3, Y, Ri R2 R3 R4 R5 Rx, n, Ry are as defined in claim 1 or 2, respectively.
4. The compounds of claim 1 or 2 wherein
Figure imgf000181_0001
X2 is CR3 ;
-Y-Q is N— N
Q is a pyrazolyl group substituted with 1 to 3 Ci-C3 alkyl wherein one or more carbon-bound hydrogen may be substituted by fluorine;
R4 is H;
and wherein R3 and R5 are as defined in claim 1 or 2, respectively.
5. The compounds of claim 4, selected from the list of
Figure imgf000182_0001
Figure imgf000182_0002
Figure imgf000182_0003
Figure imgf000183_0001
6. The compounds of claim 1 or 2 wherein.
Figure imgf000183_0002
X2 is CR3 ;
-Q-Y is;
Figure imgf000183_0003
Q is pyridazinyl;
Ri is a linear branched or cyclic Ci-C6 oxalkyl, oxalkenyl, oxalkynyl, alkyloxy, oxalkyloxy, oxazalkyloxy, azalkyloxy group;
R4 is H;
and wherein R3 R5 and Rx are as defined in claim 1 or 2, respectively 7. The compounds of claim 6, selected form the list of
Figure imgf000183_0004
Figure imgf000184_0001
8. The compounds of claim 1 or 2 wherein
Figure imgf000184_0002
X2 is CR3 ;
-Q-Y is
Figure imgf000184_0003
Q is 4-pyridyl;
Ri is a linear, branched or cyclic Ci-C6 alkyloxy, alkenyloxy, oxalkyloxy, dioxalkyloxy oxalkylammino, group optionally substituted with F or CN;
R4 is H;
and wherein R5 is as defined in claim 1 or 2, respectively
9. The compounds of claim 8 selected form the list of
Figure imgf000185_0001
10
Figure imgf000186_0001
Figure imgf000186_0002
10. The compounds of claim 1 or 2 wherein
Figure imgf000186_0003
X2 is CR3;
Ri is a linear, branched or cyclic
Figure imgf000186_0004
alkoxy or oxalkyloxy;
R3 is F;
R4 is H;
and wherein X3, Y-Q, R5j Rx, n and Ry are as defined in claim 1 or 2 respectively
11. The compounds of claim 10, selected form the list of
Figure imgf000186_0005
Figure imgf000187_0001
Figure imgf000188_0001
Figure imgf000188_0002
The compounds of claim 1, of formula (I-ter)
Figure imgf000188_0003
(l-ter)
wherein, as valence and stability permit;
any carbon-bound hydrogen atom may be substituted with a fluorine atom;
Figure imgf000188_0004
X2 is CR3 ;
Q is a Ci-C3 linear, branched or cyclic alkylcarbonyl; Ri is OH, linear branched or cyclic Ci-C6 alkyl, alkenyl, alkynyl, oxalkyl, oxalkyloxy, oxalkylammino group;
R4 is H;
R3 is H,C1, or F;
R5 is a Ci-C3 linear, branched or cyclic alkyl group;
n may be nil, 1, 2 or 3 ;
Ry is - independently from one another when n=2 or more - F; a linear, branched or cyclic Ci-C3 alkyl group; or Ry, together with the carbon atom to which it is attached, forms an oxo group;
tautomers, optical isomers and pharmaceutically acceptable salts thereof.
13. The compounds of claim 12, wherein Ri is a linear branched or cyclic Ci-C6 alkyl group.
14. The compounds of claim 12, selected from the list of
Figure imgf000189_0001
Figure imgf000189_0002
Figure imgf000190_0001
The compounds of claim 1 or 2 wherein
Figure imgf000190_0002
Ri is a Ci-C3 linear branched or cyclic alkoxy group
X2 is CR3 ;
R3 is H;
R4 is H;
-Q-Y is
Figure imgf000190_0003
Q is a C5-C10 aryl or heteroaryl group optionally substituted with 1,2 or 3 group selected from the list of Ci-C6 linear branched or cyclic alkyl, oxalkyl, alkylamino, alkylaminocarbonyl, oxalkylamino, oxalkyloxy, azalkyloxy, halogen, cyano, or a C5-C6 aryl or heteroaryl group optionally substituted with halogen, C\-C3 alkyl, C\-C3 oxalkyl;
and wherein R5 Rx,n are as defined in claim 1 or 2, respectively
16. The compounds of claim 15, selected form the list of
Figure imgf000190_0004
Figure imgf000191_0001
Figure imgf000191_0002
Figure imgf000191_0003
Figure imgf000192_0001
Figure imgf000193_0001
Figure imgf000194_0001
Figure imgf000194_0002
Figure imgf000194_0003
Figure imgf000194_0004
17. The compounds of claims 1- 16 for use in the preparation of a medicament, in particular for the treatment of cancer , pulmonary fibrosis, renal fibrosis, ischemic neural injury or multiple sclerosis.
18. The compounds of claim 1- 16, for use in the cure of a cancer selected from the list of lung cancer; colon cancer; pancreatic cancer; breast cancer; melanoma; glioblastoma; medulloblastoma; gastric cancer; hepatocellular cancer; basal cell carcinoma;leukemia; Wilm's tumour; Familial Adenomatous Polyposis.
19. Pharmaceutical compositions containing a compound according to claims 1-16 in admixture with a pharmaceutically acceptable carrier or excipient.
20. A method for the treatment of diseases, conditions, or dysfunctions that benefit from the inhibition of the Wnt pathway, which comprises administering to a subject in need thereof an effective amount of a compound according to claims 1- 16.
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