WO2012073041A2 - Composés - Google Patents

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WO2012073041A2
WO2012073041A2 PCT/GB2011/052386 GB2011052386W WO2012073041A2 WO 2012073041 A2 WO2012073041 A2 WO 2012073041A2 GB 2011052386 W GB2011052386 W GB 2011052386W WO 2012073041 A2 WO2012073041 A2 WO 2012073041A2
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formula
cancer
compound
group
alkyl
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PCT/GB2011/052386
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WO2012073041A3 (fr
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Srinivasan Madhusudan
Peter Fischer
Charles Laughton
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The University Of Nottingham
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Publication of WO2012073041A3 publication Critical patent/WO2012073041A3/fr

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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D235/00Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, condensed with other rings
    • C07D235/02Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, condensed with other rings condensed with carbocyclic rings or ring systems
    • C07D235/04Benzimidazoles; Hydrogenated benzimidazoles
    • C07D235/24Benzimidazoles; Hydrogenated benzimidazoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached in position 2
    • C07D235/28Sulfur atoms
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C235/00Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms
    • C07C235/02Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to acyclic carbon atoms and singly-bound oxygen atoms bound to the same carbon skeleton
    • C07C235/04Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to acyclic carbon atoms and singly-bound oxygen atoms bound to the same carbon skeleton the carbon skeleton being acyclic and saturated
    • C07C235/16Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to acyclic carbon atoms and singly-bound oxygen atoms bound to the same carbon skeleton the carbon skeleton being acyclic and saturated having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a six-membered aromatic ring
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C69/00Esters of carboxylic acids; Esters of carbonic or haloformic acids
    • C07C69/74Esters of carboxylic acids having an esterified carboxyl group bound to a carbon atom of a ring other than a six-membered aromatic ring
    • C07C69/753Esters of carboxylic acids having an esterified carboxyl group bound to a carbon atom of a ring other than a six-membered aromatic ring of polycyclic acids
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    • C07C69/76Esters of carboxylic acids having a carboxyl group bound to a carbon atom of a six-membered aromatic ring
    • C07C69/94Esters of carboxylic acids having a carboxyl group bound to a carbon atom of a six-membered aromatic ring of polycyclic hydroxy carboxylic acids, the hydroxy groups and the carboxyl groups of which are bound to carbon atoms of six-membered aromatic rings
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    • C07D209/00Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom
    • C07D209/02Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring
    • C07D209/04Indoles; Hydrogenated indoles
    • C07D209/30Indoles; Hydrogenated indoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to carbon atoms of the hetero ring
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    • C07D249/00Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms
    • C07D249/02Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms not condensed with other rings
    • C07D249/081,2,4-Triazoles; Hydrogenated 1,2,4-triazoles
    • C07D249/101,2,4-Triazoles; Hydrogenated 1,2,4-triazoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D263/00Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings
    • C07D263/02Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings not condensed with other rings
    • C07D263/30Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members
    • C07D263/34Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
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    • C07D263/00Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings
    • C07D263/52Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings condensed with carbocyclic rings or ring systems
    • C07D263/54Benzoxazoles; Hydrogenated benzoxazoles
    • C07D263/56Benzoxazoles; Hydrogenated benzoxazoles with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached in position 2
    • C07D263/57Aryl or substituted aryl radicals
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    • C07D263/00Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings
    • C07D263/52Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings condensed with carbocyclic rings or ring systems
    • C07D263/62Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings condensed with carbocyclic rings or ring systems having two or more ring systems containing condensed 1,3-oxazole rings
    • C07D263/64Heterocyclic compounds containing 1,3-oxazole or hydrogenated 1,3-oxazole rings condensed with carbocyclic rings or ring systems having two or more ring systems containing condensed 1,3-oxazole rings linked in positions 2 and 2' by chains containing six-membered aromatic rings or ring systems containing such rings
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D277/00Heterocyclic compounds containing 1,3-thiazole or hydrogenated 1,3-thiazole rings
    • C07D277/60Heterocyclic compounds containing 1,3-thiazole or hydrogenated 1,3-thiazole rings condensed with carbocyclic rings or ring systems
    • C07D277/62Benzothiazoles
    • C07D277/68Benzothiazoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached in position 2
    • C07D277/70Sulfur atoms
    • C07D277/74Sulfur atoms substituted by carbon atoms
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D277/00Heterocyclic compounds containing 1,3-thiazole or hydrogenated 1,3-thiazole rings
    • C07D277/60Heterocyclic compounds containing 1,3-thiazole or hydrogenated 1,3-thiazole rings condensed with carbocyclic rings or ring systems
    • C07D277/62Benzothiazoles
    • C07D277/68Benzothiazoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached in position 2
    • C07D277/82Nitrogen atoms
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D333/00Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom
    • C07D333/50Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom condensed with carbocyclic rings or ring systems
    • C07D333/52Benzo[b]thiophenes; Hydrogenated benzo[b]thiophenes
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    • C07D333/00Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom
    • C07D333/50Heterocyclic compounds containing five-membered rings having one sulfur atom as the only ring hetero atom condensed with carbocyclic rings or ring systems
    • C07D333/52Benzo[b]thiophenes; Hydrogenated benzo[b]thiophenes
    • C07D333/62Benzo[b]thiophenes; Hydrogenated benzo[b]thiophenes with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to carbon atoms of the hetero ring
    • C07D333/68Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen
    • C07D333/70Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen attached in position 2
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
    • C07D403/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D405/00Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom
    • C07D405/02Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings
    • C07D405/12Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings linked by a chain containing hetero atoms as chain links
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D409/00Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
    • C07D409/02Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings
    • C07D409/12Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D413/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
    • C07D417/06Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
    • C07D417/12Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
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    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems
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    • C07D491/00Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
    • C07D491/02Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
    • C07D491/04Ortho-condensed systems
    • C07D491/056Ortho-condensed systems with two or more oxygen atoms as ring hetero atoms in the oxygen-containing ring
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    • C07D495/00Heterocyclic compounds containing in the condensed system at least one hetero ring having sulfur atoms as the only ring hetero atoms
    • C07D495/02Heterocyclic compounds containing in the condensed system at least one hetero ring having sulfur atoms as the only ring hetero atoms in which the condensed system contains two hetero rings
    • C07D495/04Ortho-condensed systems
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C2601/00Systems containing only non-condensed rings
    • C07C2601/02Systems containing only non-condensed rings with a three-membered ring
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    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C2603/00Systems containing at least three condensed rings
    • C07C2603/02Ortho- or ortho- and peri-condensed systems
    • C07C2603/04Ortho- or ortho- and peri-condensed systems containing three rings
    • C07C2603/22Ortho- or ortho- and peri-condensed systems containing three rings containing only six-membered rings
    • C07C2603/24Anthracenes; Hydrogenated anthracenes

Definitions

  • the field of the invention is generally related to new compounds, the new compounds for use in a method for treatment of the human or animal body by therapy, and, in particular, their use in a method of treating cancer.
  • a method of treating cancer involving the inhibition of the cancer cell DNA base excision repair (BER) pathway through the inhibition of apurinic/apyrimidinic endonuclease (APE1 ) activity.
  • Inhibition of APE1 activity results in an accumulation of unrepaired apurinic/apyrimidinic (AP) sites in the cancer cell.
  • AP sites are cytotoxic and can induce a
  • BER is required for the accurate removal of bases that have been damaged by alkylation, oxidation or ring-saturation. This pathway also handles a variety of other lesions including deaminated bases and DNA single strand breaks. BER is performed by at least two major sub-pathways. These sub-pathways differ from each other in the length of the repair patch and in the subsets of enzymes involved. However, both pathways are initiated by a damage specific DNA glycosylase, which removes the damaged base creating an abasic (AP) site. AP sites are obligatory intermediates in the BER pathway.
  • AP sites are cytotoxic and represent a major threat to the integrity and survival of a cell. Inactivation of APE1 leads to an accumulation of AP sites, retards cell proliferation and activates apoptosis.
  • APE1 is a critical enzyme in the recognition and processing of AP sites in the BER pathway. APE1 accounts for over 95% of the total AP endonuclease activity in human cell lines. AP sites can arise spontaneously at a rate of about 10,000 AP sites per day in each human cell. In addition the activity of DNA glycosylases that process damaged DNA bases generate AP sites that would certainly add to this burden. Indeed, the steady state level of AP lesions is estimated in some studies to be much higher approaching 50,000 or more per cell depending on age and tissue source. Inactivating APE1 and hence the BER pathway inhibits the ability of the cell to repair itself and thus maximises the cytotoxicity of chemotherapeutic agents which induce genomic DNA damage.
  • Chemotherapy and radiation are the two main treatments currently available to improve outcomes in patients with advanced cancer.
  • the cytotoxicity of many of these agents is directly related to their propensity to induce genomic DNA damage.
  • the ability of cancer cells to recognise this damage and initiate DNA repair is an important mechanism for therapeutic resistance that negatively impacts upon therapeutic efficacy.
  • Pharmacological inhibition of the BER pathway of DNA repair therefore, has the potential to maximise the cytotoxicity of a diverse range of anticancer agents.
  • Ar1 , Ar2 and Ar3 are as defined below.
  • a method of treating cancer in a patient comprising the step of administering a therapeutically effective amount of a compound of any one of Formulae 1 , 2, 3, 4, 5 and 6 or a pharmaceutically acceptable salt thereof.
  • Ar, Ar1 , Ar2, Ar3 are each independently aryl or heteroaryl groups which may be substituted or unsubstituted with one or more R9 group.
  • X1 and X2 are each independently alkyl or heteroalkyi groups, typically lower alkyl or heteroalkyi groups comprising a carbon backbone of 1 to 10 carbon atoms optionally including one or more heteroatoms, suitably 1 to 6, more suitably 2 to 4 carbon atoms optionally including one or more heteroatoms.
  • the alkyl or heteroalkyi groups may be mono- or poly- substituted typically with one or more R10 group.
  • R, R1 , R2, R3, R4, R5, R6, R7, R8, R9 and R10 are each independently H, alkyl, heteroalkyi, aryl, heteroaryl and combinations of two or more thereof or R1 1 , R1 1 being selected from O-, N-, NH-, CO, COO, CON, CONH, SO2, SO2N and SO2NH group linking one or more alkyl, heteroalkyi, aryl or heteroaryl group.
  • R1 to R1 1 may be linked to form a cyclic group, such as a cycloalkyl, cycloheteroalkyi, polycyclic, cyclic ketone, cyclic ketone, cyclic alcohol, cyclic ester and cyclic ether group.
  • Suitable heteroatoms include S, O, N and Se.
  • a method of treating cancer in a patient comprising the step of administering a therapeutically effective amount of a compound of any one of Formulae 7 to 18 or a pharmaceutically acceptable salt thereof.
  • Formulae 7 to 18 may include one or more substituent, defined as R above. Where heteroatoms are specified in Formulae 7 to 18, these may be the heteroatoms specified, or may be substituted for another heteroatom. Suitable heteroatoms include S, O, N and Se.
  • R1 and R2 generally represent alkyl groups, in particular 1 to 5 atom alkyl groups.
  • R1 may represent a methyl group and R2 may represent an ethyl group.
  • R1 and R2 generally represent alkyl groups, in particular 1 to 5 atom alkyl groups. In particular R1 and R2 may represent methyl groups.
  • R1 generally represents an alkyl group, in particular a 1 to 5 atom alkyl group.
  • R1 may represent a methyl group.
  • R2 generally represents a halo group, in particular CI .
  • R1 is generally an ether group, in particular MeO.
  • R1 generally represents a halo group, in particular F.
  • a further aspect of the present invention relates to a compound of any one of Formulae 1 to 18, or a pharmaceutically acceptable salt thereof, for use in a method for treatment of the human or animal body by therapy.
  • a further aspect of the present invention relates to a compound of any one of Formulae 1 to 18, or a pharmaceutically acceptable salt thereof, for use in the treatment of cancer.
  • a further aspect of the present invention relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of any one of Formulae 1 to 18 or a pharmaceutically acceptable salt thereof and one or more diluents, carriers or excipients.
  • a further aspect of the present invention relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of any one of Formulae 1 to 18 or a pharmaceutically acceptable salt thereof and one or more diluents, carriers or excipients for use in a method for treatment of the human or animal body by therapy.
  • a further aspect of the present invention relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of any one of Formulae 1 to 18 or a pharmaceutically acceptable salt thereof and one or more diluents, carriers or excipients for use in a method for use in the treatment of cancer.
  • a further aspect of the present invention relates to a process for the preparation of a compound of Formulae 1 to 18 as hereinbefore defined.
  • the present invention also provides a method for increasing, preferably maximising, the cytotoxicity of a chemotherapeutic agent comprising the steps of administering the chemotherapeutic agent and a compound of any one of Formulae 1 to 18
  • a further aspect of the present invention relates to a compound of any one of Formulae 1 to 18, or a pharmaceutically acceptable salt thereof, in
  • a chemotherapeutic agent for use in a method for treatment of the human or animal body by therapy; preferably, for use in the treatment of cancer; and, more preferably, for use in increasing the cytotoxicity of the chemotherapeutic agent.
  • alkyl includes both straight chain and branched alkyl groups.
  • the alkyl group may be substituted (mono- or poly-) or unsubstituted.
  • Suitable substituents include, for example, halo, CF3, OH, CN, NO2, SO3H, SO2NH2, SO2Me, NH2, COOH, CONH2, alkyl and alkoxy.
  • the alkyl group is a C1 -20 alkyl group, generally a C1 -15 alkyl group.
  • the alkyl group may be a C1 -12 alkyl group, suitably a C1 -6 alkyl group, advantageously a C1 -3 alkyl group.
  • Particularly preferred alkyl groups include, for example, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tert-butyl, pentyl and hexyl.
  • heteroalkyi includes an alkyl group as defined above which comprises one or more heteroatoms.
  • cycloalkyl refers to a cyclic alkyl group which may be substituted (mono- or poly-) or unsubstituted. Suitable substituents include, for example, halo, CF3, OH, CN, NO2, SO3H, SO2NH2, SO2Me, NH2, COOH, CONH2 and alkoxy.
  • cycloheteroalkyl refers to a cyclic heteroalkyi group which may be substituted (mono- or poly-) or unsubstituted. Suitable substituents include, for example, halo, CF3, OH, CN, NO2, SO3H, SO2NH2, SO2Me, NH2, COOH, CONH2 and alkoxy. Preferred cycloheteroalkyl groups include morpholino, piperazinyl and piperidinyl groups.
  • aryl refers to an aromatic, substituted (mono- or poly-) or unsubstituted group, and includes, for example, phenyl, naphthyl etc.
  • suitable substituents include, for example, halo, CF3, OH, CN, NO2, SO3H, SO2NH2, SO2Me, NH2, COOH, CONH2 and alkoxy.
  • heteroaryl refers to an aromatic, substituted (mono- or poly-) or unsubstituted group, which comprises one or more heteroatoms.
  • Preferred heteroatoms include N, S, O.
  • Preferred heteroaryl groups include pyrrole, pyrazole, pyrimidine, pyrazine, pyridine, quinoline, triazine, triazole, thiophene, selenazol, thiazole and furan.
  • suitable substituents include, for example, halo, CF3, OH, CN, NO2, SO3H, SO2NH2, SO2Me, NH2, COOH, CONH2 and alkoxy.
  • halo or halogeno refers to F, CI, Br or I.
  • Ar1 , Ar2 and Ar3 may each independently represent a substituted or unsubstituted aryl or heteroaryl group.
  • AM , Ar2 and Ar3 each independently represent 6-membered aryl rings which may be substituted or unsubstituted.
  • Preferred substituents include one or more halo group, in particular fluoro group and/or one or more alkyl group, typically a lower alkyl group having a carbon backbone of one to six C atoms.
  • Ar2 and Ar3 are each independently phenyl groups unsubstituted or substituted with one or more halo or methyl group.
  • Ar1 is a toluyl group, in particular a 4-toluyl group
  • Ar2 is a fluorophenyl group, in particular a 4-fluorophenyl group
  • Ar3 is an unsubstituted phenyl group.
  • a method of treating cancer in a patient comprising the step of administering a therapeutically effective amount of a compound of Formulae 2 or a
  • Ar1 and Ar2 are typically each independently aryl or heteroaryl groups which may be substituted or unsubstituted.
  • Ar1 and Ar2 independently represent a fused multi ring aryl or heteroaryl group, such as a 5- or 6-membered aryl or heteroaryl ring fused to a 5- or 6-membered aryl or heteroaryl ring.
  • Suitable heteroatoms include N, S and O, more suitably N and O.
  • Ar1 and Ar2 independently represent a 5- membered aryl or heteroaryl ring fused to a 6-membered aryl or heteroaryl ring.
  • Ar1 and Ar2 independently represent a 5-membered heteroaryl ring fused to a 6-membered aryl ring.
  • Ar1 and Ar2 may be the same.
  • A1 and/or A2 may represent a 5- or 6- membered aryl group, suitably a 6- membered aryl group, typically substituted with a COO- group.
  • Ar1 and/or Ar2 represents benzoxazol-2-yl, or benzimidazol-2-yl.
  • Ar1 may represent 3-chlorobenzothien-2-yl and Ar2 may represent 4-benzoate.
  • X1 and X2 are independently alkyl or heteroalkyl linker groups having a backbone of 1 to 10 atoms, typically 1 to 6 atoms. According to one
  • X1 and X2 have a backbone of 2 atoms.
  • Typical heteroatoms include S, O and N.
  • X1 and X2 may be the same.
  • X1 and/or X2 represent CH2S.
  • R1 , R2, R3 and R4 represent H.
  • R1 may represent an alkyl or heteroalkyl group, advantageously OMe.
  • a method of treating cancer in a patient comprising the step of administering a therapeutically effective amount of a compound of Formulae 3 or a
  • Ar1 , Ar2 and Ar3 are typically each independently aryl or heteroaryl groups which may be substituted or unsubstituted.
  • Ar1 and Ar2 independently represent a 5- or 6- membered aryl or heteroaryl group. Suitable heteroatoms include N, S and O, more suitably N and S.
  • Ar3 may represent a fused multi ring aryl or heteroaryl group, such as a 5- or 6-membered aryl or heteroaryl ring fused to a 5- or 6-membered aryl or heteroaryl ring. Such aryl or heteroaryl groups may be substituted or unsubstituted.
  • Ar3 represents a naphthyl group.
  • X1 represents an alkyl or heteroalkyl linker group having a backbone of 1 to 10 atoms, typically 2 to 6 atoms. Typical heteroatoms include S, O and N, in particular O.
  • the alkyl or heteroalkyl groups may be substituted or
  • X1 represents COCH2OCO.
  • R1 represents H.
  • a method of treating cancer in a patient comprising the step of administering a therapeutically effective amount of a compound of Formulae 4 or a pharmaceutically acceptable salt thereof:
  • Ar, Ar1 and Ar2 are typically each independently aryl or heteroaryl groups which may be substituted or unsubstituted.
  • Ar1 , Ar2 and Ar3 independently represent a 5- or 6-membered aryl or heteroaryl group.
  • Suitable heteroatoms include N, S and O.
  • Ar1 , Ar2 and Ar3 may independently represent a fused multi ring aryl or heteroaryl group, such as a 5- or 6-membered aryl or heteroaryl ring fused to a 5- or 6-membered aryl or heteroaryl ring.
  • Suitable heteroatoms include N, S and O, in particular O.
  • Ar1 , Ar2 and Ar3 independently represent a 5-membered heteroaryl ring fused to a 6-membered aryl ring.
  • Ar1 represents a benzodioxole group
  • Ar2 represents a pyrazole or a thiazole group
  • Ar3 represents a benzodioxole or a thiophene group.
  • X1 and X2 are independently alkyl or heteroalkyi linker groups having a backbone of 1 to 10 atoms, typically 1 to 6 atoms. Typical heteroatoms include S, O and N, in particular O and N.
  • X1 represents CH2CONH and X2 represents (CH2)3CONHCH2.
  • Z represents S or NH, preferably S.
  • a method of treating cancer in a patient comprising the step of administering a therapeutically effective amount of a compound of Formulae 5 or a pharmaceutically acceptable salt thereof:
  • Ar1 , Ar2 and Ar3 may each independently represent substituted or unsubstituted aryl or heteroaryl group.
  • Ar1 , Ar2 and Ar3 may each independently represent substituted or unsubstituted aryl or heteroaryl group.
  • substituents independently represent 6-membered aryl rings which may be substituted or unsubstituted.
  • Preferred substituents include one or more halo group, in particular fluoro group and/or one or more alkyl group, typically a lower alkyl group having a carbon backbone of one to six C atoms.
  • Ar1 , Ar2 and Ar3 are each independently phenyl groups unsubstituted or substituted with one or more halo or methyl group.
  • Ar1 is a toluyl group, in particular a 4-toluyl group
  • Ar2 is a fluorophenyl group, in particular a 4-fluorophenyl group
  • Ar3 is an unsubstituted phenyl group.
  • a method of treating cancer in a patient comprising the step of administering a therapeutically effective amount of a compound of Formulae 5 or a
  • X1 and X2 are independently alkyl or heteroalkyl linker groups having a backbone of 1 to 10 atoms, typically 1 to 6 atoms. According to one embodiment X1 and X2 have a backbone of 1 to 3 atoms. Typical
  • heteroatoms include S, O and N, in particular N and O.
  • X1 and X2 may be cyclo-alkyl or heteroalkyl groups.
  • R1 to R7 represent H.
  • R8 is a 5- or 6- membered aryl ring, in particular a phenyl group.
  • R8 may represent a substituted or unsubstituted phenyl group, such as a methoxyphenyl group.
  • the compounds of Formulae 1 to 18 react with APE1 meaning that APE1 is unable to react with unrepaired AP sites.
  • APE1 is a critical enzyme in the BER pathway, and this inactivation of APE1 leads to a corresponding depletion in the repair of DNA through the BER pathway.
  • the depletion of APE1 leads to an accumulation of unrepaired AP sites.
  • Such AP sites are cytotoxic, and their accumulation is associated with decreased cell viability and increased apoptosis. The cell proliferation is also reduced.
  • the method of the present invention involves a reduction in the activity of APE1 in a cancerous cell of at least about 50%, suitably at least about 70%, advantageously at least about 90%.
  • the method of the present invention involves a reduction in the activity of APE1 in a cancerous tumour of at least about 50%, suitably at least about 70%, advantageously at least about 90%.
  • the method of the present invention involves an increase in the amount of AP sites in cancerous cells of at least about 50%, suitably at least about 70%, advantageously at least about 90%.
  • the method of the present invention results in a reduction of the repair of DNA of cancerous cells through the BER mechanism of at least about 50%, generally at least about 70%, preferably at least about 90%.
  • a reduction in the repair of cancerous cell DNA though the BER mechanism would result in a reduction of total repair of cancerous cell DNA of at least about 30%.
  • the method of the present invention may result in an increase in cancer cell apoptosis of about 20% or more.
  • a reduction in cancer cell proliferation of about 10% or more may also be observed.
  • the size of cancerous tumours may be reduced by about 10% or more through the method of the present invention.
  • the method of the present invention results in the effective prevention of the BER mechanism in cancerous cells.
  • the method of the present invention results in the effective prevention of the BER mechanism in cancerous tumours.
  • the method of the present invention specifically targets APE1 , and does not react with or inhibit any other molecules.
  • the compounds of Formulae 1 to 18 have an IC50 of less than about 30 ⁇ ; suitably less than about 10 ⁇ ; preferably less than about 5 ⁇ .
  • the compounds of the present invention have a relatively high aqueous solubility.
  • the compounds of the present invention have a favourable solubility profile with xLogP ranging from about 1 .0 to about 5.0 of at least.
  • the compounds of Formulae 1 to 18 have been found to be effective in vitro, in whole cell extracts as well as in connection with purified APE1 . They are associated with good membrane permeability.
  • the method of the present invention may be used to treat all cancers.
  • the method of the present invention is particularly effective in treating cancers associated with an aberrant expression of APE1 , typically an elevated expression of APE1 .
  • suitable cancers include breast cancer, lung cancer, in particular non-small cell lung cancer, bone cancer, head-and-neck cancer, ovarian cancer, pancreatic cancer, gastro-oesophageal cancer, melanoma and brain cancer.
  • the compounds of the present invention may be used in homologous recombination repair deficit, including BRCA-deficient breast and ovarian tumours.
  • the dosage of compounds required is dependent on the specific compound administered. However, in general the method of the present invention may involve the administration of compounds at less than about 30 ⁇ , suitably less than about 10 ⁇ , more suitably less than about 5 ⁇ .
  • the method of the present invention involves the administration of the compounds of the present invention at regular intervals, for instance once every week or more, potentially three times a week to daily administrations are envisaged.
  • More than one compound of the present invention may be administered.
  • the method of the present invention may involve the administration of one or more chemotherapeutic agent which does not fall into the scope of Formulae 1 to18.
  • the method of the present invention may involve the administration of one or more chemotherapeutic agents which cause damage to cancer cell DNA, generally through alkylation, oxidation or ring-saturation of cancer cell DNA, or through instigation of damage such as deamination of DNA bases and DNA single strand breaks.
  • the method of the present invention prevents or greatly reduces the proliferation of cancerous cells.
  • the method of the present invention prevents or greatly reduces the proliferation of cancerous cells.
  • cancerous cells proliferation of cancerous cells is reduced by at least about 10%, generally about 20% or more, preferably about 50% or more. In particular the spread of cancerous cells to different types of tissue is greatly reduced.
  • the method of the present invention inhibits the activity of APE1 , and this leads to an increase in the number of AP sites.
  • AP sites are cytotoxic and their accumulation increases cancer cell apoptosis as well as reducing proliferation of cancer cells.
  • a method of preventing cancer, or preventing the proliferation of cancer involving the administration of one or more compounds of Formulae 1 to 18.
  • the present invention also relates to compounds of Formulae 1 to 18, or pharmaceutically acceptable salts thereof, for use in any of the methods disclosed herein.
  • reaction of the compounds of the present invention with APE1 prevents APE1 from reacting with AP sites. This leads to an inhibition of cancer cell
  • composition comprising a compound of Formulae 1 to 18.
  • composition comprises pharmaceutically acceptable excipients.
  • the composition may comprise more than one of the compounds of Formulae 1 to 18.
  • composition may comprise a chemotherapeutic agent which does not fall into the scope of Formulae 1 to 18.
  • composition may be in the form of a tablet, a capsule, a solution, a suspension an elixir or any other standard pharmaceutical preparation.
  • a further aspect of the invention provides the compositions comprising a compound of Formulae 1 to 18 for use in any one of the methods disclosed herein.
  • chemotherapeutic agent comprising the steps of administering a compound of any one of Formulae 1 to 18 and the chemotherotherapeutic agent.
  • chemotherapeutic agents and ionising radiation act through damaging cancer cell DNA.
  • damage is generally repaired through the DNA base excision repair (BER) pathway.
  • the therapeutic activity of such chemotherapeutic agents is necessarily limited by the contemporaneous repair of such damage ttrough the BER mechanism.
  • the compounds of the present invention inactivate APE1 , inhibiting its ability to react with AP sites, and thus at least partially blocking the BER pathway. This reduces the rate of repair of DNA damage resulting in an associated increase in the effectiveness of such chemotherapeutic agents.
  • the chemotherapeutic agents are generally those which act through damaging cancer cell DNA, such as alkylating agents (including temozolomide and dacarbazine), bleomycin, gencitabine, 5-fluorouracil and analogues, platinum compounds (such as cisplatin, oxaliplatin, carboplatin and others), 6- Thioguanine and other nucleoside analogues.
  • the method involves the steps of administering a compound of any one of Formulae 1 to 18 and one or more of the group consisting of temozolomide, gemcitabine, 5-fluorouracil and analogues thereof, ionizing radiation, platinum compounds and nucleoside analogues.
  • the compound of the present invention may be administered concomitantly or sequentially to the chemotherapeutic agent.
  • the compound of the present invention and the chemotherapeutic agent may be in a single dosage form or multiple dosage forms.
  • the compound of the present invention is advantageously administered as a single agent therapy in the treatment of breast cancer and ovarian cancer with homologous recombination repair deficit, including BRCA-deficient ovarian and breast cancer tumours.
  • the method of the present invention results in an increase in cytotoxicity of known chemotherapeutic agents of about 20% or more, generally about 30% or more, advantageously about 50% or more.
  • an increase in cytotoxicity of known chemotherapeutic agents of about 20% or more, generally about 30% or more, advantageously about 50% or more.
  • chemotherapeutc agents is surprisingly great and the associated damage to cancer cells is surprisingly great.
  • Figures 1 a to 1 d illustrate the inhibition of APE1 upon contact with the compounds of the present invention
  • FIG. 2 details the structures of preferred compounds of the present invention
  • Figure 3 details the inhibitory profile of various compounds of the present inventionwith respect to APE1 and Endonuclease IV.
  • MMS Methyl methane sulfonate
  • F fluorescein
  • Q dabcyl
  • X 3-hydroxy-2-(hydroxymethyl)-terahydrofuran (abasic site analogue)
  • oligonucleotides for the radiolabeled DNA substrates for HeLa WCE assays - 18FNMR 5'GTCACCGTGFTACGACTC 3'(F tetrahydrofuran) and 18GNMR 5' GAGTCGTAGCACGGTGAC 3' - were obtained from Trilink
  • the MeWo melanoma cancer cell line was a gift from Dr Andrew Jackson, University of Nottingham, UK. U89MG The glioma cancer cell line was a gift from Dr Tracey Bradshaw, University of Nottingham, UK.
  • CellTiter 96 ® AQueous Non-Radiactive Cell Proliferation Assay (MTS) Kit was purchased from Promega.
  • Sybyl8.0 a computational tool kit for molecular design and analyses.
  • Sybyl8.0 was used to build inhibitor templates based on three previously reported APE1 inhibitors: lucanthone:, 1 -[[2- (diethylamino)ethyl]amino]-4-methyl-9H-thioxanthen-9-one.
  • lucanthone 1 -[[2- (diethylamino)ethyl]amino]-4-methyl-9H-thioxanthen-9-one.
  • pharmacophore templates were designed in silico (M1 , M2 and M3). Using these six templates, a shape-based similarity searching strategy using the programme Rapid Overlay of Chemical Structures 2.3 (ROCS 2.3; OpenEye Scientific) was applied to extract pharmacophorically related subsets of compounds from the ZINC database (http://zinc.docking.org/; 2008 version with ca. 2.5 million drug-like compounds). A Tanimoto similarity cut-off was set at 0.75 for all queries with the exception of the template M3, where the cut-off was set at 0.6. Hits from each of the six templates were saved in * .sdf format and subjected to docking against the APE1 active site model.
  • a fluorescence based AP site cleavage assay was developed. Briefly, APE1 enzyme (80 ng, New England Biolabs)) was incubated in a buffer system comprising of 50 mM Tris-HCI, pH 8.0, 1 mM MgCI2, 50 mM NaCI, 2 mM DTT at 37°C for 10 minutes. 5' F-GCCCCCXGGGGACGTACGATATCCCGCTCC 3' and its complementary oligonucleotide 3' Q-
  • CGGGGGCCCCCTGCATGCTATAGGGCGAGG 5' were annealed in a buffer containing 100 ⁇ Tris-HCI, 50 mM NaCI and 1 ⁇ EDTA.
  • AP site cleavage was initiated by addition of the annealed substrate (25 nM) to the reaction mix. Fluorescence readings were taken at 5 minute intervals during a 30 minute incubation at 37°C using an Envision® Multilabel reader from Perkins Elmer with a 495 nM excitation and a 512 nM emission filter.
  • the 6- mer lluorescein-containing molecule can dissociate from its complement by thermal melting.
  • the quenching effect of the 3' dabcyl labal (which absorbs fluorescein fluorescence when in close proximity) is lost, and APE1 activity can be measured indirectly as an increase in fluorescence signal.
  • Similar assays were developed for monitoring the AP endonuclease activity of endonuclease IV using a buffering system containing 10 mM HEPES-KOH, pH 7.4, 100 mM KCI and 60 ng of endonuclease IV (Trevigen). The final DMSO concentration was maintained at 1 .2% in all assays.
  • APE1 was incubated with the candidate inhibitors at 100 ⁇ prior to initiating the AP site cleavage assay described in the previous section. Those candidates that showed complete or more than 90% inhibition of APE1 activity were subjected to serial dilution experiments for IC50 calculations. In addition, counter screening of potential inhibitors (at 100 ⁇ concentration) was performed using endonuclease IV cleavage assays.
  • oligonucleotides 5'-F-GCCCCCXGGGGACGTACGATATCCCGCTCC-3' and 3'CGGGGGCCCCCTGCATGCTATAGGGCGAGG-5' were annealed as described previously.
  • the double stranded oligonucleotide (5 nM) was incubated with 100 ⁇ of potential APE1 inhibitors in a buffer consisting of 50 ⁇ Tris-HCI, Ph 8.0, 1 mM MgCI2, 50 mM NaCI, and 2 mM DTT at 37°C for 30 minutes. Fluorescence intensity was measured every 5minutes. Any hits that showed a decrease of more than 50% in the fluorescence intensity were considered as quenchers.
  • HeLa cells maintained in DMEM with 10% fetal bovine serum and 1 % penicillin-streptomycin, were harvested, washed with PBS, resuspended in cold 222 mM KCI plus protease inhibitors (0.5 mM PMSF, 1 g/mL each of leupepetin and pepstatin A) incubated on ice for 30 min, and clarified by centrifugation at 12,000 x g for 15 min at 4°C . The supernatant (whole cell extract) was retained, the protein concentration determined using the Bio-Rad Bradford reagent, and aliquots were stored at -80°C. AP endonuclease activity assays using radiolabeled oligonucleotide substrates (see above) were performed. In brief, potential APE1 inhibitors identified by the
  • fluorescence assay were incubated at 100 ⁇ concentrations with 30 ng of HeLa whole cell extract at room temperature for 15 min in incision buffer consisting of 50 mM Tris-HCI pH 8, 1 mM MgCI2, 50 mM NaCI, and 2mM DTT. After incubation, 0.5 pmol 32P-radiolabeled tetrahydrofuran-containing 18mer double-stranded DNA was added.
  • Incision reactions were then carried out immediately at 37 °C for 5 min in a final volume of 10 ⁇ _, after which the reaction was terminated by the addition of an equal volume of stop buffer (0.05% bromophenol blue and xylene cynol, 20 mM EDTA, 95% formamide) followed by denaturation of samples at 95°C for 10 min.
  • stop buffer 0.05% bromophenol blue and xylene cynol, 20 mM EDTA, 95% formamide
  • MeWo melanoma cancer cell line was grown in RPMI culture medium
  • MTS assay AQueous Non- Radioactive Cell Proliferation Assays
  • APE1 downloaded from the protein data bank and the DNA repair domain localised based on the previously reported ten critical amino acid residues that are essential for the AP endonuclease activity of APE1 (D70, D90, E96, Y171 , D210, N212, D219, D283, D308, and H309).
  • the active site of APE1 was well defined and the Mg2+ ion involved in the APE1 catalytic mechanism was observed to occupy the centre of the cleft.
  • Three new pharmacophore templates (M1 , M2 and M3) were designed and visualised on the APE1 model. The structures were then energy minimised and subjected to docking against the active site of the APE1 model. Predicted ligand poses were ranked on the basis of two fitness scoring functions: GOLDScore and ChemScore. One hundred docking runs were performed for each ligand and the docking programme was set to assign the best fitness score in a total of hundred runs.
  • Shape-based similarity searching was applied to extract pharmacophorically related subsets of compounds from the ZINC database of commercially available small molecule compounds.
  • the conformations of these compounds were then energy minimised and subjected to docking against the active site of the APE1 model.
  • the top ranking 25% of the compounds with favourable GOLDsScore and ChemScores were shortlisted for further analyses.
  • 5-Fluoro-1 H-indole-2-carboxylic acid belongs to the "CRT0044876 (C)" template (see Figure 2).
  • CRT0044876, our previously described inhibitor was used as a positive control in these studies.
  • the IC50 for APE1 inhibition ranged between 3 ⁇ to 26 ⁇ .

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Abstract

L'invention concerne un composé ayant la formule structurale quelconque de la Formule 1 à la Formule 18, ou un sel pharmaceutiquement acceptable de celui-ci, et leur utilisation.
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Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN104230898A (zh) * 2013-06-17 2014-12-24 上海汇伦生命科技有限公司 苯并咪唑-2-哌嗪杂环类化合物、其药物组合物及其制备方法和用途
CN104230897A (zh) * 2013-06-17 2014-12-24 上海汇伦生命科技有限公司 苯并咪唑-2-哌嗪杂环类化合物、其药物组合物及其制备方法和用途
JP2021528368A (ja) * 2018-05-10 2021-10-21 ユニヴァーシティー・オブ・ルイスヴィル・リサーチ・ファウンデイション・インコーポレーテッド Ras腫瘍性タンパク質の阻害剤、その作製方法及びその使用方法
US11351130B2 (en) 2017-04-17 2022-06-07 Indiana University Research And Technology Corporation Prevention and reversal of inflammation induced DNA damage
CN116535366A (zh) * 2023-03-20 2023-08-04 广州医科大学 一种噻唑类化合物及其制备方法和应用

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WO2003007955A2 (fr) * 2001-07-20 2003-01-30 Cancer Research Technology Limited Nouvelle utilisation

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Cited By (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN104230898A (zh) * 2013-06-17 2014-12-24 上海汇伦生命科技有限公司 苯并咪唑-2-哌嗪杂环类化合物、其药物组合物及其制备方法和用途
CN104230897A (zh) * 2013-06-17 2014-12-24 上海汇伦生命科技有限公司 苯并咪唑-2-哌嗪杂环类化合物、其药物组合物及其制备方法和用途
US11351130B2 (en) 2017-04-17 2022-06-07 Indiana University Research And Technology Corporation Prevention and reversal of inflammation induced DNA damage
JP2021528368A (ja) * 2018-05-10 2021-10-21 ユニヴァーシティー・オブ・ルイスヴィル・リサーチ・ファウンデイション・インコーポレーテッド Ras腫瘍性タンパク質の阻害剤、その作製方法及びその使用方法
CN116535366A (zh) * 2023-03-20 2023-08-04 广州医科大学 一种噻唑类化合物及其制备方法和应用
CN116535366B (zh) * 2023-03-20 2023-12-05 广州医科大学 一种噻唑类化合物及其制备方法和应用

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