WO2012031046A2 - Lipids suitable for liposomal delivery of protein-coding rna - Google Patents
Lipids suitable for liposomal delivery of protein-coding rna Download PDFInfo
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- WO2012031046A2 WO2012031046A2 PCT/US2011/050100 US2011050100W WO2012031046A2 WO 2012031046 A2 WO2012031046 A2 WO 2012031046A2 US 2011050100 W US2011050100 W US 2011050100W WO 2012031046 A2 WO2012031046 A2 WO 2012031046A2
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- rna
- liposome
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- 0 CCCCCCCCC=CCCCCCCCCC1C(C*(CN2CCCCCC2)[O+]CCC=C)=C1 Chemical compound CCCCCCCCC=CCCCCCCCCC1C(C*(CN2CCCCCC2)[O+]CCC=C)=C1 0.000 description 3
- NKIKBXIPPUUSDP-UHFFFAOYSA-N CCCNC(NCC)=O Chemical compound CCCNC(NCC)=O NKIKBXIPPUUSDP-UHFFFAOYSA-N 0.000 description 1
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- A61K9/1271—Non-conventional liposomes, e.g. PEGylated liposomes, liposomes coated with polymers
- A61K9/1272—Non-conventional liposomes, e.g. PEGylated liposomes, liposomes coated with polymers with substantial amounts of non-phosphatidyl, i.e. non-acylglycerophosphate, surfactants as bilayer-forming substances, e.g. cationic lipids
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- C12N2760/18511—Pneumovirus, e.g. human respiratory syncytial virus
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- C12N2770/36141—Use of virus, viral particle or viral elements as a vector
- C12N2770/36143—Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector
Definitions
- This invention is in the field of non-viral delivery of RNA to animals.
- nucleic acids for in vivo expression of encoded proteins is useful for both gene therapy and immunisation.
- Various approaches to successful delivery have been tested, including the use of DNA or RNA, of viral or non-viral delivery vehicles (or even no delivery vehicle, in a "naked” vaccine), of replicating or non-replicating vectors, or of viral or non-viral vectors.
- RNA is delivered encapsulated within a liposome.
- the RNA encodes a polypeptide of interest.
- the liposome includes at least one compound selected from the group consisting of compounds of formula (I) and formula (XI). These liposomes can efficiently deliver RNA for in vivo expression.
- the invention is particularly useful for immunisation, in which the encoded polypeptide is an immunogen.
- the invention provides a liposome within which RNA encoding a polypeptide of interest is encapsulated, wherein the liposome includes at least one compound selected from the group consisting of compounds of formula (I) and formula (XI).
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C3.2o-heterocycloalkyl, C3.2o-heterocycloalkenyl, C 3 . 2 o-heterocycloalkynyl or C5.2o-heteroaryl group; a is absent or optionally substituted C M alkylene;
- b is absent or optionally substituted Ci ⁇ alkylene
- c is absent or optionally substituted C ⁇ alkylene
- X 1 is O or S
- X 2 is O or S
- Y 1 is optionally substituted Cio oalkenyl, Cio- 3 oalkynyl, Cio- 3 oheteroalkenyl or C
- L is absent or is wherein
- L a is optionally substituted Q-isalkylene, Ci.i 5 alkenylene, Q.isalkynylene, Ci.i5heteroalkylene, d.isheteroalkenylene or Ci.isheteroalkynylene;
- L b is optionally substituted C6-i 4 arylene or Cs-nheteroarylene;
- L c is optionally substituted Ci.i 5 alkylene, Ci.i 5 alkenylene, Ci-ualkynylene, Ci.i 5 heteroalkylene, Q. ⁇ heteroalkenylene or Q. ⁇ heteroalkynylene;
- d is 0 or 1 ;
- e is 0 or 1 ;
- f is 0 or 1 ;
- Y 2 is an optionally substituted steroid.
- R a is a N-terminal alkylamide
- z is an integer from 2 to 10;
- each AA is an amino acid, provided that at least one histidine and at least one cationic amino acid are present;
- R b is -H or -Nth-
- the invention also provides a process for preparing a RNA-containing liposome, comprising a step of mixing RNA with a compound selected from the group consisting of compounds of formula (I) and formula (XI), under conditions such that the compounds form a liposome in which the RNA is encapsulated.
- RNA and the compound may be mixed in the presence of other compounds which also become incorporated into the liposome e.g. further lipids.
- the invention utilises liposomes within which polypeptide-encoding RNA is encapsulated.
- the RNA is (as in a natural- virus) separated from any external medium. Encapsulation within the liposome has been found to protect RNA from RNase digestion.
- the liposomes can include some external RNA ⁇ e.g. on their surface), but at least half of the RNA (and ideally all of it) is encapsulated in the liposome's core. Encapsulation within liposomes is distinct from, for instance, the lipid/RNA complexes disclosed in reference 1, where RNA is mixed with pre-formed liposomes.
- RNA- containing aqueous core can have an anionic, cationic or zwitterionic hydrophilic head group.
- anionic phospholipids dates back to the 1960s, and cationic liposome-forming lipids have been studied since the 1990s.
- Some phospholipids are anionic whereas other are zwitterionic and others are cationic.
- Suitable classes of phospholipid include, but are not limited to, phosphatidylethanolamines, phosphatidylcholines, phosphatidylserines, and phosphatidyl-glycerols, and some useful phospholipids are listed in Table 1.
- Useful cationic lipids in the prior art include, but are not limited to, dioleoyl trimethylammonium propane (DOTAP), l,2-distearyloxy-N,N-dimethyl-3-aminopropane (DSDMA), 1 ,2-dioleyloxy- N,Ndimethyl-3-aminopropane (DODMA), 1 ,2-dilinoleyloxy-N,N-dimethyl-3-aminopropane (DlinDMA), 1 ,2-dilinolenyloxy-N,N-dimethyl-3-aminopropane (DLenDMA).
- DOTAP dioleoyl trimethylammonium propane
- DSDMA l,2-distearyloxy-N,N-dimethyl-3-aminopropane
- DODMA 1 ,2-dioleyloxy- N,Ndimethyl-3-aminopropane
- DlinDMA 1 ,
- Zwitterionic lipids include, but are not limited to, acyl zwitterionic lipids and ether zwitterionic lipids.
- useful zwitterionic lipids are DPPC, DOPC, DSPC, dodecylphosphocholine, 1,2-dioleoyl-sn-glycero- 3-phosphatidylethanolamine (DOPE), and l,2-diphytanoyl-sn-glycero-3-phosphoethanolamine (DPyPE).
- DOPE 1,2-dioleoyl-sn-glycero- 3-phosphatidylethanolamine
- DPyPE l,2-diphytanoyl-sn-glycero-3-phosphoethanolamine
- the lipids in the liposomes of the invention can be saturated or unsaturated. The use of at least one unsaturated lipid for preparing liposomes is preferred. If an unsaturated lipid has two tails, both tails can be uns
- Liposomes of the invention can be formed from a single lipid or, more usually, from a mixture of lipids.
- a mixture may comprise (i) a mixture of cationic lipids (ii) a mixture of anionic lipids and cationic lipids (iii) a mixture of zwitterionic lipids and cationic lipids or (vii) a mixture of anionic lipids, cationic lipids and zwitterionic lipids.
- a mixture may comprise both saturated and unsaturated lipids. Where a mixture of lipids is used, not all of the component lipids in the mixture need to be amphiphilic e.g. one or more amphiphilic lipids can be mixed with cholesterol.
- Liposomes of the invention comprise at least one compound of formula (I) and/or at least one compound of formula (XI).
- Preferred liposomes of the invention include a cationic lipid of formula (I). As shown in the examples, such liposomes are particularly useful for in vivo delivery of RNA for protein expression.
- Other preferred liposomes of the invention include a lipopeptide of formula (XI).
- a liposome can include both a liposome of formula (I) and a lipopeptide of formula (XI), but usually includes only one of these two classes of cationic compound.
- a liposome of the invention is formed from a mixture of lipids
- the proportion of those lipids which have formula (I) or (XI) should be between 20-80% of the total amount of lipids e.g. between 30-70%, or between 40-60%.
- useful liposomes are shown below in which 40% or 60% of the total lipid is a lipid of formula (I).
- the remainder can be made of e.g. cholesterol (e.g. 35-50% cholesterol) and/or DMG (optionally PEGylated) and/or DSPC.
- DMG optionally PEGylated
- a liposome may include an amphiphilic lipid whose hydrophilic portion is PEGylated (i.e. modified by covalent attachment of a polyethylene glycol). This modification can increase stability and prevent non-specific adsorption of the liposomes.
- lipids can be conjugated to PEG using techniques such as those disclosed in reference 2 and 3.
- Useful PEGylated lipids include PEG- DMG and the lipids of reference 8's formula (XI).
- PEG provides the liposomes with a coat which can confer favourable pharmacokinetic characteristics.
- Various lengths of PEG can be used e.g. between 0.5-8kDa.
- Useful mixtures of lipids, for forming liposomes of the invention comprise: a cationic lipid of formula (I); cholesterol; and a PEGylated lipid, such as PEG-DMG i.e. PEG-conjugated 1,2- dimyristoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol).
- PEG-DMG i.e. PEG-conjugated 1,2- dimyristoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol).
- This mixture may also include a neutral zwitterionic lipid, such as DSPC (l ,2-Diastearoyl-sn-glycero-3- phosphocholine) or DPyPE.
- DSPC l ,2-Diastearoyl-sn-glycero-3- phosphocholine
- DPyPE DPyPE
- Liposomes are usually divided into three groups: multilamellar vesicles (MLV); small unilamellar vesicles (SUV); and large unilamellar vesicles (LUV).
- MLVs have multiple bilayers in each vesicle, forming several separate aqueous compartments.
- SUVs and LUVs have a single bilayer encapsulating an aqueous core; SUVs typically have a diameter ⁇ 50nm, and LUVs have a diameter >50nm.
- Liposomes of the invention are ideally LUVs with a diameter in the range of 60-180nm, and preferably in the range of 80-160nm.
- a liposome of the invention can be part of a composition comprising a plurality of liposomes, and the liposomes within the plurality can have a range of diameters.
- a composition comprising a population of liposomes with different diameters (i) at least 80% by number of the liposomes should have diameters in the range of 60-180nm, and preferably in the range of 80-160nm, and/or (ii) the average diameter (by intensity e.g. Z-average) of the population is ideally in the range of 60- 180nm, and preferably in the range of 80- 160nm.
- the diameters within the plurality should ideally have a polydispersity index ⁇ 0.2.
- the liposome RNA complexes of reference 1 are expected to have a diameter in the range of 600-800nm and to have a high polydispersity. Diameters in a population can be measured using dynamic light scattering. Techniques for preparing suitable liposomes are well known in the art e.g. see references 4 to 6. One useful method is described in reference 7 and involves mixing (i) an ethanolic solution of the lipids (ii) an aqueous solution of the nucleic acid and (iii) buffer, followed by mixing, equilibration, dilution and purification. Preferred liposomes of the invention are obtainable by this mixing process.
- mixing can be performed using a process in which two feed streams of aqueous RNA solution are combined in a single mixing zone with one stream of an ethanolic lipid solution, all at the same flow rate e.g. in a microfluidic channel as described below.
- Cationic lipids of formula (I) are as follows:
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 . 20 -heterocycloalkyl, C 3 . 20 -heterocycloalkenyl, C 3 . 20 -heterocycloalkynyl or C 5 . 2 o-heteroaryl group;
- a is absent or optionally substituted C ⁇ alkylene
- b is absent or optionally substituted C ⁇ alkylene
- c is absent or optionally substituted CM alkylene
- X 1 is O or S
- X 2 is O or S
- Y 1 is optionally substituted Ci 0 - 3 oalkenyl, Ci 0 - 3 oalkynyl, C 10 - 3 oheteroalkenyl or C io- 3 oheteroalkynyl ;
- L is absent or is -(L a ) d -(L b ) e -(L c )r-, wherein
- L a is optionally substituted Ci. ⁇ alkylene, Ci_i 5 alkenylene, Cj.isalkynylene, Ci.iiheteroalkylene, Ci.isheteroalkenylene or
- L b is optionally substituted Ce-narylene or C5_i 3 heteroarylene
- L c is optionally substituted Ci-isalkylene, Ci.i 5 alkenylene, Q.isalkynylene, Ci.i5heteroalkylene, C M5 heteroalkenylene or Ci-isheteroalkynylene;
- d is 0 or 1 ;
- Y 2 is an optionally substituted steroid.
- R 1 and R 2 together with the nitrogen atom to which they are attached, form a cyclic "headgroup" with a tertiary amine.
- the compounds of formula (I) have formula (II):
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 . 2 o-heterocycloalkyl, C 3 . 2 o-heterocycloalkenyl, C 3 . 2 o-heterocycloalkynyl or C 5 . 2 o-heteroaryl group;
- a is absent or optionally substituted CM alkylene
- b is absent or optionally substituted C alkylene
- c is absent or optionally substituted CM alkylene
- X' is O or S
- X 2 is O or S
- Y 1 is optionally substituted Ci 0 - 3 oalkenyl, Ci 0 - 3 oalkynyl, C !0 -3oheteroalkenyl or C 10 - 3 oheteroalkynyl ;
- L is -(L a ) d -(L b ) e -(LV, wherein
- V is optionally substituted C M 5alkylene, Ci-i 5 alkenylene,
- L b is optionally substituted Ce-uarylene or Cs.oheteroarylene
- L c is optionally substituted Ci_i 5 alkylene, C M5 alkenylene, C 5 alkynylene, Cj.isheteroalkylene, Ci-isheteroalkenylene or Ci-isheteroalkynylene;
- d is 0 or 1 ;
- e is 0 or 1 ;
- f is 0 or 1 ;
- L comprises one or more heteroatoms
- Y 2 is an optionally substituted steroid.
- the compounds of formula (I) have formula (III):
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 .2o-heterocycloalkyl, C 3 .2o-heterocycloalkenyl, C 3 .2o-heterocycloalkynyl or C 5 . 2 o-heteroaryl group;
- a is methylene
- X' is O or S
- X 2 is O or S
- Y 1 is optionally substituted Ci 0 - 3 oalkenyl, Ci 0 -3oalkynyl, Ci 0 - 3 oheteroalkenyl or C l o- 3 oheteroalkynyl ;
- L is -(L a )d-(L b )e-(LV, wherein
- V is optionally substituted Ci.
- L b is optionally substituted C 6 -i 4 arylene or Cs-nheteroarylene;
- L c is optionally substituted Ci.i 5 alkylene, Ci.isalkenylene, Q.isalkynylene, C).i5heteroalkylene, Ci.i 5 heteroalkenylene or Ci.isheteroalkynylene;
- d is 0 or 1 ;
- e is 0 or 1 ;
- f is 0 or 1 ;
- Y 2 is an optionally substituted steroid.
- the compounds of formula (I) have formula (IV):
- R and R together with the nitrogen atom to which they are attached form an optionally substituted C3-2o-heterocycloalkyl, C3.2o-heterocycloalkenyl, C3.2o-heterocycloalkynyl or Cs.2o-heteroaryl group;
- a is methylene
- X 1 is O or S
- X 2 is O or S
- Y 1 is optionally substituted Ci 0 - 3 oalkenyl, Cio oalkynyl, Ci 0 - 3 oheteroalkenyl or C 10 - 3 oheteroalkynyl;
- L is -(L a ) d -(L b ) e -(L c ) f -, wherein
- V is optionally substituted Ci-i 5 alkylene, Ci_i 5 alkenylene, Ci-isalkynylene, Ci.i5heteroalkylene, Ci.isheteroalkenylene or Ci.isheteroalkynylene;
- L b is optionally substituted Ce-narylene or Cs-oheteroarylene
- V is optionally substituted Ci. 15 alkylene, Ci.i 5 alkenylene, Ci.i 5 alkynylene, Ci.i5heteroalkylene, Ci.isheteroalkenylene or Ci. )5 heteroalkynylene;
- d is 0 or 1 ;
- e is 0 or 1 ;
- f is 0 or 1 ;
- L comprises one or more heteroatoms
- Y 2 is an optionally substituted steroid.
- the compounds of formula (I) have formula (V):
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C3. 2 o-heterocycloalkyl, C3. 2 o-heterocycloalkenyl, C3_2o-heterocycloalkynyl or C 5 . 2 o-heteroaryl group;
- a is methylene
- X 1 is O
- X 2 is O
- Y 1 is optionally substituted Ci 0 - 3 oalkenyl, Cio oalkynyl, Ci 0 - 3 oheteroalkenyl or C 10 - 3 oheteroalkynyl ;
- L is -(L a ) d -(L b ) e -(LV, wherein
- V is optionally substituted Ci.i 5 alkylene, Ci-isalkenylene, Ci.i 5 alkynylene, C
- L b is optionally substituted Ce-narylene or Cs-nheteroarylene
- L c is optionally substituted Ci-i 5 alkylene, Ci.i 5 alkenylene, Ci-i 5 alkynylene, Q.jsheteroalkylene, Ci-isheteroalkenylene or Ci.isheteroalkynylene;
- d is 0 or 1 ;
- e is 0 or 1 ;
- f is 0 or 1 ;
- L comprises one or more heteroatoms
- Y 2 is an optionally substituted steroid.
- the compounds of formula (I) have formula (VI):
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 _ 2 o-heterocycloalkyl, C 3 . 2 o-heterocycloalkenyl, C 3 . 20 -heterocycloalkynyl or Cs.2o-heteroaryl group;
- a is methylene
- X 1 is O
- X 2 is O
- Y 1 is optionally substituted Ci 0 - 3 oalkenyl, Ci 0 - 3 oalkynyl, Ci 0 -3oheteroalkenyl or C i o- 3 oheteroalkynyl ;
- L is -L c -, wherein L c is optionally substituted d.i 5 heteroalkylene, Ci. 15 heteroalkenylene or Ci_i5heteroalkynylene;
- Y 2 is an optionally substituted steroid.
- the compounds of formula (I) have formula (VII):
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 . 2 o-heterocycloalkyl, C 3 _ 20 -heterocycloalkenyl, C 3 . 20 -heterocycloalkynyl or C5. 20 -heteroaryl group;
- a is methylene
- X 2 is O
- Y 1 is an optionally substituted C16-22 alkenyl group
- L is -L c -, wherein L c is optionally substituted Ci.isheteroalkylene, Ci-isheteroalkenylene or Ci.i 5 heteroalkynylene; and
- Y 2 is an optionally substituted steroid.
- the compounds of formula (I) have formula (VIII):
- R and R together with the nitrogen atom to which they are attached form an optionally substituted C 3 . 2 o-heterocycloalkyl, C 3 . 2 o-heterocycloalkenyl, C 3 . 20 -heterocycloalkynyl or C 5 .2o-heteroaryl group;
- a is methylene
- X 1 is O
- X 2 is O
- Y 1 is an optionally substituted C16-22 alkenyl group
- L is -L°- wherein L c is optionally substituted C 5 heteroalkylene, Ci_i 5 heteroalkenylene or Ci.i 5 heteroalkynylene;
- Y 2 is cholesterol connected through the hydroxy group at the 3-position of the A steroid ring, the hydrogen atom of said hydroxy group being absent.
- the compounds of formula (I) have formula (IX):
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C3.2o-heterocycloalkyl, C3.2o-heterocycloalkenyl, C 3 . 2 o-heterocycloalkynyl or C 5 _2o-heteroaryl group;
- a is methylene
- X 1 is O or S
- X 2 is O or S
- Y 1 is optionally substituted Cio- 3 oalkenyl, Cio- 3 oalkynyl, Cio- 3 oheteroalkenyl or C io- 3 oheteroalkynyl ;
- L is -(L a ) d -(L b )e-(L c ) f _
- L a is optionally substituted Ci.i 5 alkylene, Q-isalkynylene, Ci_i 5 heteroalkylene, Ci-isheteroalkenylene or Ci.isheteroalkynylene;
- L b is optionally substituted C6-i 4 arylene or Cs-nheteroarylene;
- L c is optionally substituted Ci_i 5 alkylene, Ci.i 5 alkenylene, Ci.i 5 alkynylene, Ci.i 5 heteroalkylene, Ci.i 5 heteroalkenylene or Ci.i 5 heteroalkynylene;
- d is 0 or 1 ;
- e is 0 or 1 ;
- f is 0 or 1 ;
- L comprises one or more heteroatoms
- Y 2 is an optionally substituted steroid
- the pKa of the compound is from about 5.9 to about 7.
- the compounds of formula (I) have formula (X):
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 .
- a is methylene
- X 1 is O or S
- X 2 is O or S
- Y 1 is optionally substituted Cio- 3 oalkenyl, Ci 0 - 3 oalkynyl, Ci 0 - 3 oheteroalkenyl or C
- L is -(L a ) d -(L b ) e -(L c )r-, wherein
- L a is optionally substituted Ci.isalkylene, Ci-isalkenylene, Ci.isalkynylene, Q.isheteroalkylene, Ci.
- L b is optionally substituted Ce-narylene or Cs.nheteroarylene
- L c is optionally substituted Ci.i 5 alkylene, Ci.i 5 alkenylene, Ci.i 5 alkynylene,
- d is 0 or 1 ;
- e is 0 or 1 ;
- f is 0 or 1 ;
- L comprises one or more heteroatoms
- Y 2 is an optionally substituted steroid
- the pKa of the compound is from about 4.5 to about 6.2.
- a is optionally substituted C1.2 alkylene. In a further embodiment, a is optionally substituted Ci alkylene.
- b is optionally substituted C0-2 alkylene. In a further embodiment, b is optionally substituted C ⁇ alkylene.
- c is absent or is optionally substituted Ci alkylene. In a further embodiment, c is absent.
- a, b and c are, if present, unsubstituted.
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 .2o-heterocycloalkyl, C 3 . 2 o-heterocycloalkenyl, C3_2o-heterocycloalkynyl group, C 5 -heteroaryl or C 5 -heteroaryl group.
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C3.2o-heterocycloalkyl, C3_2o-heterocycloalkenyl or C3_2o-heterocycloalkynyl group.
- R' and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 3 . 2 o-heterocycloalkyl group.
- R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C5.1 group. In a further embodiment, R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C5.12 group. In a further embodiment, R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C5 group, C6 group or C7 group. In a further embodiment, R 1 and R 2 together with the nitrogen atom to which they are attached form an optionally substituted C 5 group or C 6 group.
- R 1 and R 2 together with the nitrogen atom to which they are attached forms a species which comprises at least one oxygen atom. .
- R 1 and R 2 together with the nitrogen atom to which they are attached are selected from H 1 to H 48 as provided in Table 1.
- X 1 is O. In another embodiment, X 2 is O. In a further embodiment, both X 1 and X 2 are O.
- L comprises at least one heteroatom. This means that the chain which provides a direct link between X 2 and Y 2 has at least one heteroatom or, in other words, that any heteroatom in a substituent on L does not count for these purposes.
- L- comprises at least one O atom.
- L comprises at least two heteroatoms. In a further embodiment, L comprises at least two O atoms.
- L c is optionally substituted Q.isalkylene or Ci_i 5 heteroalkylene. In one embodiment, L c is optionally substituted Cj.isalkylene or Ci.isheteroalkylene and d and e are both 0.
- L c is selected from one of formulae L c' ' to L C"XX1 ". In one embodiment, L c is selected from one of formulae L C I to L C"X I " and d and e are both 0. L c -' -(CH 2 ) 2 0(CH 2 ) 2 -
- L c is preferably selected from L c - ⁇ L c"v to L c" TM and L c"ix to L c" xxiii .
- L c is optionally substituted Ci.isheteroalkylene.
- L c is an optionally substituted Ci_n group. In a further embodiment, L is an optionally substituted Cj.g group. In a further embodiment, L c is an optionally substituted C 3 . 8 group. In a further embodiment, wherein L c is an optionally substituted C4.7 group. In a further embodiment, L c is an optionally substituted C5, C6 or C7 group.
- Y 1 is a C 12-28 group. In a further embodiment.Y 1 is a C14.26 group. In a further embodiment, Y 1 is a C 16-24 group. In a further embodiment, Y 1 is a C16-22 group. In a further embodiment, the Y 1 chain is 18, 19, 20 or 21 atoms long.
- Y 1 is preferably alkenyl or heteroalkenyl.
- Y 1 has at least one alkene group. In a further embodiment, Y 1 has 1, 2 or 3 alkene groups.
- Y' has an alkene group at the omega-3 position.
- Y 1 has an alkene group at the omega-6 position.
- Y 1 has an alkene group at the omega-9 position.
- Y 1 has an alkene group at two or three of the omega-3, omega-6 and omega-9 positions.
- Y 1 is unsaturated at the omega-6 and omega-9 positions.
- Y 1 is unsaturated at the omega-3, omega-6 and omega-9 positions.
- Y 1 is unsaturated at the omega-9 position.
- Y 1 has at least one cis unsaturated alkene group. In a further embodiment, Y 1 has at least two cis unsaturated alkene groups. In a further embodiment, Y 1 has at least three cis unsaturated alkene groups. The at least o'ne cis unsaturated alkene group may be at one, two or three of the omega-3, omega-6 and omega-9 positions. Unsaturation in lipid chains is discussed in MacLachlan et ai, Journal of Controlled Release 107 (2005) 276-287.
- Y 1 is selected from Y 1"1 to Y 1_V1 as provided in Table 2.
- Y 2 is linked to L via an oxygen atom on the optionally substituted steroid. In a further embodiment, Y 2 is linked to L via an oxygen atom on the 3-position of the A steroid ring. In a further embodiment Y 2 is a sterol in which the hydrogen atom of the hydroxy group at the 3-position of the A steroid ring has been removed (and the connection to L is through the oxygen atom of said hydroxy group).
- said sterol is selected from the group consisting of: annasterol; avenasterol; beta-si tosterol; brassicasterol; calciferol; campesterol; chalinosterol; chinasterol; cholestanol; cholesterol; coprostanol; cycloartol; dehydrocholesterol; desmosterol; dihydrocalciferol; dihydrocholesterol; dihydroergosterol; dinosterol; epicholesterol; ergosterol; fucosterol; hexahydrolumisterol; hexaol; hydroxycholesterol; lanosterol; lumisterol; parkeol; poriferasterol; saringosterol; sitostanol; sitosterol; stigmastanol; stigmasterol; weinbersterol; zymosterol; sterol bile acids (such as cholic acid; chenodeoxycholic acid; glycocholic acid; tauroc
- the sterol is cholesterol.
- the pKa of a lipid is the pH at which 50% of the lipids are charged, lying halfway between the point where the lipids are completely charged and the point where the lipids are completely uncharged. It can be measured in various ways, but is preferably measured using the method disclosed below.
- the pKa typically should be measured for the lipid alone rather than for the lipid in the context of a mixture which also includes other lipids e.g. not as performed in reference 2, which looks at the pKa of a SNALP rather than of the individual lipids).
- the pKa of a lipid is measured in water at standard temperature and pressure using the following technique:
- 0.3mM solution of fluorescent probe toluene nitrosulphonic acid (TNS) in ethanol methanol 9: 1 is prepared by first making 3mM solution of TNS in methanol and then diluting to 0.3mM with ethanol.
- An aqueous buffer containing sodium phosphate, sodium citrate sodium acetate and sodium chloride, at the concentrations 20mM, 25mM, 20mM and 150 mM, respectively, is prepared.
- the buffer is split into eight parts and the pH adjusted either with 12N HC1 or 6N NaOH to 4.44-4.52, 5.27, 6.15-6.21 , 6.57, 7.10-7.20, 7.72-7.80, 8.27-8.33 and 10.47-1 1.12.
- 400uL of 2mM lipid solution and 800uL of 0.3mM TNS solution are mixed.
- • 7.5 ⁇ 1_, of probe/lipid mix are added to 242.5 ⁇ _, of buffer in a 1 mL 96 well plate. This is done with all eight buffers.
- lOOuL of each probe/lipid/buffer mixture is transferred to a 250uL black with clear bottom 96 well plate (e.g. model COSTAR 3904, Corning).
- Fluorescence of each probe/lipid/buffer mixture is measured (e.g. with a SpectraMax M5 spectrophotometer and SoftMax pro 5.2 software) with 322nm excitation, 431nm emission (auto cutoff at 420nm).
- lipids having a pKa in the range of 5.0 to 7.6 have a pKa of 5.5 to 6.7 e.g. between 5.6 and 6.8, between 5.6 and 6.3, between 5.6 and 6.0, between 5.5 and 6.2, or between 5.7 and 5.9.
- the compound may be E0024, E0014, E0052, E01 18, E0083, E001 1 , E0008, E0025, E0026, E0069, E0076, E0077, E0078, E0085 or E0088.
- the compound may be the lipids shown below which were used in the "RV03" to "RV12" liposomes, or in the "RV15" liposomes.
- Preferred compounds are E0026, E0069 and E0078.
- Preferred compounds are the lipids shown below which were used in the "RV05", "RV08" and "RV09” liposomes.
- a liposome of the invention uses compound "RV02" (structure 'shown below). Except for this substitution, all other aspects of these RV02-containing liposomes are as described elsewhere herein.
- Compounds of formula (XI) are cationic lipopeptides which comprise a N-terminal alkylamide and from 2 to 10 amino acids.
- Formula (XI) is:
- R a is a N-terminal alkylamide z is an integer from 2 to 10;
- each AA is an amino acid, provided that at least one histidine and at least one cationic amino acid are present;
- R b is -H, -OH or -NH 2 .
- R a moiety has formula R c -C(0)- R d - where R c is an C 2 to C 24 alkyl and R d is -H or C, to C 4 alkyl.
- Suitable R c groups include lauryl ('Lau'; C 12 ) and palmitoyl ('Pal' ; C )6 ).
- the amide of the R a moiety is attached to an oligopeptide chain of from 2 to 10 amino acids e.g. from 3-8 amino acids.
- This chain includes at least one (e.g. 1 , 2, 3, 4 or 5) histidine. It also includes at least one cationic amino acid e.g. at least one arginine, lysine or ornithine residue.
- the inclusion of at least one lysine is preferred, and ideally 2 or 3 lysines. Histidine is included because its side chain is weakly basic and predominantly un-ionized at physiological pH, but is more highly protonated in the weakly acidic environment of the endosome.
- a cationic amino acid such as lysine or arginine, provides a unit positive charge on the lipopeptide at neutral pH.
- Useful oligopeptides have amino acid sequence -C-Kj-H j - where: i is 1 , 2 or 3; and j is 1 , 2, 3, 4 or 5.
- the C-terminus of the oligopeptide chain can be left as -COOH or can instead form an amide.
- Suitable lipopeptides of formula (XI) thus include, but are not limited to: Lau-(C-K-K-H)-NH 2 , Pal- (C-K-H-H)-NH 2> Pal-(C-K-K-H-H)-NH 2 , Pal-(C-K-K-H-H-H)-NH 2 , Pal-(C-K-K-H-H-H-H)- H 2 , Pal-(C-K-K-H-H-H-H)-NH 2> Pal-(C- -K-K-H-H)-NH 2 and Pal-(C- -K- -H-H)-NH 2 .
- These and other compounds are disclosed in reference 9, and include:
- Liposomes of the invention include a RNA molecule which (unlike siRNA, as in reference 2) encodes a polypeptide. After in vivo administration of the particles, RNA is released from the particles and is translated inside a cell to provide the polypeptide in situ.
- RNA is +-stranded, and so it can be translated by cells without needing any intervening replication steps such as reverse transcription. It can also bind to TLR7 receptors expressed by immune cells, thereby initiating an adjuvant effect which is useful for immunisation purposes.
- Preferred +-stranded RNAs are self-replicating.
- a self-replicating RNA molecule (replicon) can, when delivered to a vertebrate cell even without any proteins, lead to the production of multiple daughter RNAs by transcription from itself (via an antisense copy which it generates from itself).
- a self-replicating RNA molecule is thus typically a +-strand molecule which can be directly translated after delivery to a cell, and this translation provides a RNA-dependent RNA polymerase which then produces both antisense and sense transcripts from the delivered RNA.
- the delivered RNA leads to the production of multiple daughter RNAs.
- RNAs may be translated themselves to provide in situ expression of an encoded polypeptide of interest, or may be transcribed to provide further transcripts with the same sense as the delivered RNA which are translated to provide in situ expression of the polypeptide of interest.
- the overall result of this sequence of transcriptions is a huge amplification of the introduced replicon RNAs and so the encoded polypeptide of interest becomes a major product of the cells.
- RNA replicon One suitable system for achieving self-replication is to use an alphavirus-based RNA replicon. These +-stranded replicons are translated after delivery to a cell to give of a replicase (or replicase- transcriptase). The replicase is translated as a polyprotein which auto-cleaves to provide a replication complex which creates genomic—strand copies of the +-strand delivered RNA. These— strand transcripts can themselves be transcribed to give further copies of the +-stranded parent RNA and also to give a subgenomic transcript which encodes the polypeptide of interest. Translation of the subgenomic transcript thus leads to in situ expression of the polypeptide by the infected cell.
- a replicase or replicase- transcriptase
- the replicase is translated as a polyprotein which auto-cleaves to provide a replication complex which creates genomic—strand copies of the +-strand delivered RNA.
- strand transcripts can themselves be transcribed to give further copies of the
- Suitable alphavirus replicons can use a replicase from a Sindbis virus, a semliki forest virus, an eastern equine encephalitis virus, a Venezuelan equine encephalitis virus, etc. Mutant or, wild-type viruses sequences can be used e.g. the attenuated TC83 mutant of VEEV has been used in replicons [10].
- a preferred self-replicating RNA molecule thus encodes (i) a RNA-dependent RNA polymerase which can transcribe RNA from the self-replicating RNA molecule and (ii) a polypeptide of interest.
- the polymerase can be an alphavirus replicase e.g. comprising one or more of alphavirus proteins nsPl, nsP2, nsP3 and nsP4.
- RNA molecule of the invention does not encode alphavirus structural proteins.
- a preferred self-replicating RNA can lead to the production of genomic RNA copies of itself in a cell, but not to the production of RNA- containing virions.
- the inability to produce these virions means that, unlike a wild-type alphavirus, the self-replicating RNA molecule cannot perpetuate itself in infectious form.
- alphavirus structural proteins which are necessary for perpetuation in wild-type viruses are absent from self-replicating RNAs of the invention and their place is taken by gene(s) encoding the polypeptide of interest, such that the subgenomic transcript encodes that polypeptide rather than the structural alphavirus virion proteins.
- RNA molecule useful with the invention may have two open reading frames.
- the first (5') open reading frame encodes a replicase; the second (3') open reading frame encodes a polypeptide of interest.
- the RNA may have additional ⁇ e.g. downstream) open reading frames e.g. to encode further polypeptides of interest (see below) or to encode accessory polypeptides.
- a self-replicating RNA molecule can have a 5' sequence which is compatible with the encoded replicase.
- Self-replicating RNA molecules can have various lengths but they are typically 5000-25000 nucleotides long e.g. 8000-15000 nucleotides, or 9000-12000 nucleotides. Thus the RNA is longer than seen in siRNA delivery.
- a RNA molecule useful with the invention may have a 5' cap (e.g. a 7-methylguanosine). This cap can enhance in vivo translation of the RNA.
- the 5' nucleotide of a RNA molecule useful with the invention may have a 5' triphosphate group. In a capped RNA this may be linked to a 7-methylguanosine via a 5'-to-5' bridge.
- a 5' triphosphate can enhance RIG-I binding and thus promote adjuvant effects.
- a RNA molecule may have a 3' poly-A tail. It may also include a poly-A polymerase recognition sequence (e.g. AAUAAA) near its 3' end.
- a RNA molecule useful with the invention will typically be single-stranded. Single-stranded RNAs can generally initiate an adjuvant effect by binding to TLR7, TLR8, RNA helicases and/or PKR. RNA delivered in double-stranded form (dsRNA) can bind to TLR3, and this receptor can also be triggered by dsRNA which is formed either during replication of a single-stranded RNA or within the secondary structure of a single-stranded RNA.
- dsRNA double-stranded form
- RNA molecule useful with the invention can conveniently be prepared by in vitro transcription (rVT).
- rVT can use a (cDNA) template created and propagated in plasmid form in bacteria, or created synthetically (for example by gene synthesis and/or polymerase chain-reaction (PCR) engineering methods).
- a DNA-dependent RNA polymerase such as the bacteriophage T7, T3 or SP6 RNA polymerases
- Appropriate capping and poly-A addition reactions can be used as required (although the replicon's poly-A is usually encoded within the DNA template).
- RNA polymerases can have stringent requirements for the transcribed 5' nucleotide(s) and in some embodiments these requirements must be matched with the requirements of the encoded replicase, to ensure that the IVT-transcribed RNA can function efficiently as a substrate for its self-encoded replicase.
- the self-replicating RNA can include (in addition to any 5' cap structure) one or more nucleotides having a modified nucleobase.
- the RNA can comprise m5C (5-methylcytidine), m5U (5-methyluridine), m6A (N6-methyladenosine), s2U (2-thiouridine), Urn (2'-0-methyluridine), ml A (1-methyladenosine); m2A (2-methyladenosine); Am (2'-0- methyladenosine); ms2m6A (2-methylthio-N6-methyladenosine); i6A (N6-isopentenyladenosine); ms2i6A (2-methylthio-N6isopentenyladenosine); io6A (N6-(cis-hydroxyisopentenyl)adenosine); ms2io6A (2-methylthio-N6-(cis-hydroxyisopen
- a self-replicating RNA can include one or more modified pyrimidine nucleobases, such as pseudouridine and/or 5-methylcytosine residues.
- the RNA includes no modified nucleobases, and may include no modified nucleotides i.e. all of the nucleotides in the RNA are standard A, C, G and U ribonucleotides (except for any 5' cap structure, which may include a 7'-methylguanosine).
- the RNA may include a 5' cap comprising a 7'-methylguanosine, and the first 1, 2 or 3 5' ribonucleotides may be methylated at the 2' position of the ribose.
- RNA used with the invention ideally includes only phosphodiester linkages between nucleosides, but in some embodiments it can contain phosphoramidate, phosphorothioate, and/or methylphosphonate linkages.
- a liposome includes fewer than 10 different species of RNA e.g. 5, 4, 3, or 2 different species; most preferably, a liposome includes a single RNA species i.e. all RNA molecules in the liposome have the same sequence and same length.
- RNA per liposome can vary.
- the number of individual self-replicating RNA molecules per liposome is typically ⁇ 50 e.g. ⁇ 20, ⁇ 10, ⁇ 5, or 1-4 per liposome.
- RNA molecules used with the invention encode a polypeptide of interest. After administration of the liposomes the RNA is translated in vivo and the resulting protein can exert its desired effect e.g. it can elicit an immune response in the recipient, or it can provide a function of interest, such as an enzymatic activity .
- the RNA molecule can encode a single polypeptide of interest or multiple polypeptides. Multiple polypeptides can be presented as a single polypeptide (fusion polypeptide) or as separate polypeptides. If polypeptides are expressed as separate polypeptides from a replicon then one or more of these may be provided with an upstream IRES or an additional viral promoter element. Alternatively, multiple polypeptides may be expressed from a polyprotein that encodes individual polypeptide fused to a short autocatalytic protease (e.g. foot-and-mouth disease virus 2A protein), or as inteins.
- a short autocatalytic protease e.g. foot-and-mouth disease virus 2A protein
- the RNA encodes a polypeptide with a useful in vivo function.
- the invention does not encompass RNA which encodes a firefly luciferase or which encodes a fusion protein of E.coli ⁇ -galactosidase or which encodes a green fluorescent protein (GFP).
- GFP green fluorescent protein
- Such polypeptides may be useful as markers but the invention concerns delivery of RNA for in vivo expression of a polypeptide which can provide a useful therapeutic or immunological response.
- the RNA is not total mouse thymus RNA.
- the RNA encodes a polypeptide immunogen. After administration of the liposomes the RNA is translated in vivo and the immunogen can elicit an immune response in the recipient.
- the immunogen may elicit an immune response against a bacterium, a virus, a fungus or a parasite (or, in some embodiments, against an allergen; and in other embodiments, against a tumor antigen).
- the immune response may comprise an antibody response (usually including IgG) and/or a cell-mediated immune response.
- the polypeptide immunogen will typically elicit an immune response which recognises the corresponding bacterial, viral, fungal or parasite (or allergen or tumour) polypeptide, but in some embodiments the polypeptide may act as a mimotope to elicit an immune response which recognises a bacterial, viral, fungal or parasite saccharide.
- the immunogen will typically be a surface polypeptide e.g. an adhesin, a hemagglutinin, an envelope glycoprotein, a spike glycoprotein, etc.
- the immunogen elicits an immune response against one of these bacteria: Neisseria meningitidis: useful immunogens include, but are not limited to, membrane proteins such as adhesins, autotransporters, toxins, iron acquisition proteins, and factor H binding protein. A combination of three useful polypeptides is disclosed in reference 13.
- Streptococcus pneumoniae useful polypeptide immunogens are disclosed in reference 14. These include, but are not limited to, the RrgB pilus subunit, the beta-N-acetyl-hexosaminidase precursor (spr0057), spr0096, General stress protein GSP-781 (spr2021, SP2216), serine/threonine kinase StkP (SP1732), and pneumococcal surface adhesin PsaA.
- Streptococcus pyogenes include, but are not limited to, the polypeptides disclosed in references 15 and 16.
- Bordetella pertussis Useful pertussis immunogens include, but are not limited to, pertussis toxin or toxoid (PT), filamentous haemagglutinin (FHA), pertactin, and agglutinogens 2 and 3.
- Staphylococcus aureus Useful immunogens include, but are not limited to, the polypeptides disclosed in reference 17, such as a hemolysin, esxA, esxB, ferrichrome-binding protein (sta006) and/or the staOl 1 lipoprotein.
- Clostridium tetani the typical immunogen is tetanus toxoid.
- Cornynebacterium diphtheriae the typical immunogen is diphtheria toxoid.
- Haemophilus influenzae Useful immunogens include, but are not limited to, the polypeptides disclosed in references 18 and 19.
- Streptococcus agalactiae useful immunogens include, but are not limited to, the polypeptides disclosed in reference 15.
- Chlamydia trachomatis Useful immunogens include, but are not limited to, PepA, LcrE, ArtJ, DnaK, CT398, OmpH-like, L7/L12, OmcA, AtoS, CT547, Eno, HtrA and MurG ⁇ e.g. as disclosed in reference 20.
- LcrE [21] and HtrA [22] are two preferred immunogens.
- Chlamydia pneumoniae Useful immunogens include, but are not limited to, the polypeptides disclosed in reference 23.
- Helicobacter pylori Useful immunogens include, but are not limited to, CagA, VacA, NAP, and/or urease [24].
- Escherichia coli Useful immunogens include, but are not limited to, immunogens derived from enterotoxigenic E. coli (ETEC), enteroaggregative E. coli (EAggEC), diffusely adhering E. coli (DAEC), enteropathogenic E. coli (EPEC), extraintestinal pathogenic E. coli (ExPEC) and/or enterohemorrhagic E. coli (EHEC).
- ExPEC strains include uropathogenic E.coli (UPEC) and meningitis/sepsis-associated E.coli (MNEC).
- UPEC uropathogenic E.coli
- MNEC meningitis/sepsis-associated E.coli
- Useful UPEC polypeptide immunogens are disclosed in references 25 and 26.
- Useful MNEC immunogens are disclosed in reference 27.
- a useful immunogen for several E.coli types is AcfD [28].
- Yersinia pestis Useful immunogens include, but are not limited to, those disclosed in references 29 and 30.
- Brucella such as B. abortus, B.canis, B.melitensis, B.neotomae, B.ovis, B.suis, B.pinnipediae.
- Francisella such as F.novicida, F.philomiragia, F.tularensis.
- Salmonella typhi Salmonella typhi
- the immunogen elicits an immune response against one of these viruses: Orthomyxovirus: Useful immunogens can be from an influenza A, B or C virus, such as the hemagglutinin, neuraminidase or matrix M2 proteins. Where the immunogen is an influenza A virus hemagglutinin it may be from any subtype e.g. HI, H2, H3, H4, H5, H6, H7, H8, H9, H10, HI 1, H12, H13, H14, H15 or H16.
- Viral immunogens include, but are not limited to, those derived from Pneumoviruses ⁇ e.g. respiratory syncytial virus, RSV), Rubulaviruses ⁇ e.g. mumps virus), Paramyxoviruses ⁇ e.g. parainfluenza virus), Metapneumoviruses and Morbilliviruses ⁇ e.g. measles virus).
- Viral immunogens include, but are not limited to, those derived from Orthopoxvirus such as Variola vera, including but not limited to, Variola major and Variola minor.
- Viral immunogens include, but are not limited to, those derived from Picornaviruses, such as Enteroviruses, Rhinoviruses, Heparnavirus, Cardioviruses and Aphthoviruses.
- the enterovirus is a poliovirus e.g. a type 1, type 2 and/or type 3 poliovirus.
- the enterovirus is an EV71 enterovirus.
- the enterovirus is a coxsackie A or B virus.
- Bunyavirus Viral immunogens include, but are not limited to, those derived from an Orthobunyavirus, such as California encephalitis virus, a Phlebovirus, such as Rift Valley Fever virus, or a Nairovirus, such as Crimean-Congo hemorrhagic fever virus.
- an Orthobunyavirus such as California encephalitis virus, a Phlebovirus, such as Rift Valley Fever virus, or a Nairovirus, such as Crimean-Congo hemorrhagic fever virus.
- Viral immunogens include, but are not limited to, those derived from a Heparnavirus, such as hepatitis A virus (HAV).
- HAV hepatitis A virus
- Viral immunogens include, but are not limited to, those derived from a filovirus, such as an Ebola virus (including a Zaire, Ivory Coast, Reston or Sudan ebolavirus) or a Marburg virus.
- a filovirus such as an Ebola virus (including a Zaire, Ivory Coast, Reston or Sudan ebolavirus) or a Marburg virus.
- Viral immunogens include, but are not limited to, those derived from a Togavirus, such as a Rubivirus, an Alphavirus, or an Arterivirus. This includes rubella virus.
- Flavivirus Viral immunogens include, but are not limited to, those derived from a Flavivirus, such as Tick-borne encephalitis (TBE) virus, Dengue (types 1, 2, 3 or 4) virus, Yellow Fever virus, Japanese encephalitis virus, Kyasanur Forest Virus, West Nile encephalitis virus, St. Louis encephalitis virus, Russian spring-summer encephalitis virus, Powassan encephalitis virus.
- TBE Tick-borne encephalitis
- Dengue types 1, 2, 3 or 4
- Yellow Fever virus Japanese encephalitis virus
- Kyasanur Forest Virus Japanese encephalitis virus
- West Nile encephalitis virus West Nile encephalitis virus
- St. Louis encephalitis virus St. Louis encephalitis virus
- Russian spring-summer encephalitis virus Powassan encephalitis virus.
- Pestivirus Viral immunogens include, but are not limited to, those derived from a Pestivirus, such as Bovine viral diarrhea (BVDV), Classical swine fever (CSFV) or Border disease (BDV).
- Hepadnavirus Viral immunogens include, but are not limited to, those derived from a Hepadnavirus, such as Hepatitis B virus.
- a composition can include hepatitis B virus surface antigen (HBsAg).
- a composition can include an immunogen from a hepatitis C virus, delta hepatitis virus, hepatitis E virus, or hepatitis G virus.
- Viral immunogens include, but are not limited to, those derived from a Rhabdovirus, such as a Lyssavirus ⁇ e.g. a Rabies virus) and Vesiculovirus (VSV).
- a Rhabdovirus such as a Lyssavirus ⁇ e.g. a Rabies virus
- VSV Vesiculovirus
- Viral immunogens include, but are not limited to, those derived from Calciviridae, such as Norwalk virus (Norovirus), and Norwalk-like Viruses, such as Hawaii Virus and Snow Mountain Virus.
- Viral immunogens include, but are not limited to, those derived from a SARS coronavirus, avian infectious bronchitis (IBV), Mouse hepatitis virus (MHV), and Porcine transmissible gastroenteritis virus (TGEV).
- the coronavirus immunogen may be a spike polypeptide.
- Retrovirus include, but are not limited to, those derived from an Oncovirus, a Lentivirus (e.g. HIV-1 or HIV-2) or a Spumavirus.
- Viral immunogens include, but are not limited to, those derived from an Orthoreovirus, a Rotavirus, an Orbivirus, or a Coltivirus.
- Viral immunogens include, but are not limited to, those derived from Parvovirus B 19.
- Herpesvirus include, but are not limited to, those derived from a human herpesvirus, such as, by way of example only, Herpes Simplex Viruses (HSV) (e.g. HSV types 1 and 2), Varicella-zoster virus (VZV), Epstein-Barr virus (EBV), Cytomegalovirus (CMV), Human Herpesvirus 6 (HHV6), Human Herpesvirus 7 (HHV7), and Human Herpesvirus 8 (HHV8).
- HSV Herpes Simplex Viruses
- VZV Varicella-zoster virus
- EBV Epstein-Barr virus
- CMV Cytomegalovirus
- HHV6 Human Herpesvirus 6
- HHV7 Human Herpesvirus 7
- HHV8 Human Herpesvirus 8
- Viral immunogens include, but are not limited to, those derived from Papillomaviruses and Polyomaviruses.
- the (human) papillomavirus may be of serotype 1 , 2, 4, 5, 6, 8, 1 1 , 13, 16, 18, 31, 33, 35, 39, 41, 42, 47, 51, 57, 58, 63 or 65 e.g. from one or more of serotypes 6, 11 , 16 and/or 18.
- Viral immunogens include those derived from adenovirus serotype 36 (Ad-36).
- the immunogen elicits an immune response against a virus which infects fish, such as: infectious salmon anemia virus (ISAV), salmon pancreatic disease virus (SPDV), infectious pancreatic necrosis virus (IPNV), channel catfish virus (CCV), fish lymphocystis disease virus (FLDV), infectious hematopoietic necrosis virus (IHNV), koi herpesvirus, salmon picorna-like virus (also known as picorna-like virus of atlantic salmon), landlocked salmon virus (LSV), atlantic salmon rotavirus (ASR), trout strawberry disease virus (TSD), coho salmon tumor virus (CSTV), or viral hemorrhagic septicemia virus (VHSV).
- infectious salmon anemia virus ISAV
- SPDV salmon pancreatic disease virus
- IPNV infectious pancreatic necrosis virus
- CCV channel catfish virus
- FLDV fish lymphocystis disease virus
- IHNV infectious hematopoietic necrosis virus
- Fungal immunogens may be derived from Dermatophytres, including: Epidermophyton floccusum, Microsporum audouini, Microsporum canis, Microsporum distortum, Microsporum equinum, Microsporum gypsum, Microsporum nanum, Trichophyton concentricum, Trichophyton equinum. Trichophyton gallinae, Trichophyton gypseum, Trichophyton megnini, Trichophyton mentagrophytes, Trichophyton quinckeanum, Trichophyton rubrum, Trichophyton schoenleini, Trichophyton tonsurans, Trichophyton verrucosum, T. verrucosum var. album, var.
- the immunogen elicits an immune response against a parasite from the Plasmodium genus, such as P. falciparum, P.vivax, P.malariae or P. ovale.
- the invention may be used for immunising against malaria.
- the immunogen elicits an immune response against a parasite from the Caligidae family, particularly those from the Lepeophtheirus and Caligus genera e.g. sea lice such as Lepeophtheirus salmonis or Caligus rogercresseyi.
- the immunogen elicits an immune response against: pollen allergens (tree-, herb, weed-, and grass pollen allergens); insect or arachnid allergens (inhalant, saliva and venom allergens, e.g. mite allergens, cockroach and midges allergens, hymenopthera venom allergens); animal hair and dandruff allergens (from e.g. dog, cat, horse, rat, mouse, etc.); and food allergens ⁇ e.g. a gliadin).
- pollen allergens tree-, herb, weed-, and grass pollen allergens
- insect or arachnid allergens inhalant, saliva and venom allergens, e.g. mite allergens, cockroach and midges allergens, hymenopthera venom allergens
- animal hair and dandruff allergens from e.g. dog, cat,
- Important pollen allergens from trees, grasses and herbs are such originating from the taxonomic orders of Fagales, Oleales, Pinales and platanaceae including, but not limited to, birch (Betula), alder (Alnus), hazel (Corylus), hornbeam (Carpinus) and olive (Olea), cedar (Cryptomeria and Juniperus), plane tree (Platanus), the order of Poales including grasses of the genera Lolium, Phleum, Poa, Cynodon, Dactylis, Holcus, Phalaris, Secale, and Sorghum, the orders of Asterales and Urticales including herbs of the genera Ambrosia, Artemisia, and Parietaria.
- venom allergens including such originating from stinging or biting insects such as those from the taxonomic order of Hymenoptera including bees (Apidae), wasps (Vespidea), and ants (Formicoidae).
- the immunogen is a tumor antigen selected from: (a) cancer-testis antigens such as NY-ESO- 1 , SSX2, SCP1 as well as RAGE, BAGE, GAGE and MAGE family polypeptides, for example, GAGE-1 , GAGE-2, MAGE-1 , MAGE-2, MAGE-3, MAGE-4, MAGE-5, MAGE-6, and MAGE- 12 (which can be used, for example, to address melanoma, lung, head and neck, NSCLC, breast, gastrointestinal, and bladder tumors; (b) mutated antigens, for example, p53 (associated with various solid tumors, e.g., colorectal, lung, head and neck cancer), p21/Ras (associated with, e.g., melanoma, pancreatic cancer and colorectal cancer), CDK4 (associated with, e.g., melanoma), MUM 1 (associated with, e.g.
- cancer-testis antigens
- melanoma associated with, e.g., head and neck cancer
- CIA 0205 associated with, e.g. , bladder cancer
- HLA-A2-R1701 associated with, e.g., beta catenin
- TCR associated with, e.g., T-cell non-Hodgkins lymphoma
- BCR-abl associated with, e.g.
- WT 1 associated with, e.g., various leukemias
- carbonic anhydrase associated with, ( e.g., renal cancer)
- aldolase A associated with, e.g., lung cancer
- PRAME associated with, e.g., melanoma
- HER-2/neu associated with, e.g., breast, colon, lung and ovarian cancer
- mammaglobin associated with, e.g., hepatoma
- KSA associated with, e.g., colorectal cancer
- gastrin associated with, e.g., pancreatic and gastric cancer
- telomerase catalytic protein associated with, e.g.
- melanoma-melanocyte differentiation antigens such as MART-l/Melan A, gplOO, MC 1R, melanocyte-stimulating hormone receptor, tyrosinase, tyrosinase related protein- 1/TRPl and tyrosinase related protein-2/TRP2 (associated with, e.g., melanoma);
- prostate associated antigens such as PAP, PSA, PSMA, PSH-P1, PSM-P1 , PSM-P2, associated with e.g., prostate cancer;
- tumor immunogens include, but are not limited to, pl5, Hom/Mel-40, H-Ras, E2A-PRL, H4-RET, IGH-IGK, MYL-RAR, Epstein Barr virus antigens, EBNA, human papillomavirus (HPV) antigens, including E6 and E7, hepatitis B and C virus antigens, human T-cell lymphotropic virus antigens, TSP-180, pl85erbB2, pl 80erbB-3, c-met, mn-23Hl, TAG-72-4, CA 19-9, CA 72-4, CAM 17.1, NuMa, K-ras, pl6, TAGE, PSCA, CT7, 43-9F, 5T4, 791 Tgp72, beta-HCG, BCA225, BTAA, CA 125, CA 15-3 (CA 27.29VBCAA), CA 195, CA 242, CA-50, CAM43, CD68 ⁇ KP1, CO-029,
- the RNA encodes a polypeptide which is useful in a gene therapy context.
- This encoded protein is provided in addition to any polypeptides which are encoded for a RNA's ability to self-replicate.
- the RNA may encode an enzyme (for example, an enzyme which does not bind to RNA), a cytokine, a transmembrane receptor, an ion channel, a hormone, a blood protein, or an antibody.
- the RNA preferably encodes a human polypeptide in these categories.
- Enzymes of interest include, but are not limited to: DNA polymerase alpha, DNA polymerase delta,
- Cytokines of interest include, but are not limited to: interleukin 1; interleukin 2; interleukin 4; interleukin 6; interleukin 7; interleukin 12; interleukin 17; GM-CSF; G-CSF; TNF-alpha; interferon alpha; interferon beta; interferon gamma; and secretoneurin.
- Receptors of interest include, but are not limited to: the leptin receptor; the low-density lipoprotein receptor; the bone morphogenetic protein type 2 receptor; the TNF receptor; the gonadotropin- releasing hormone receptor; the dopamine receptor; the somatostatin receptor; the vitamin D receptor; the urokinase plasminogen activator receptor; the transferrin receptor; etc.
- Ion channels of interest include, but are not limited to: HCN2; HCN4; CFTR; the a-subunit of the Maxi-K channel; KCNQ2; KCNQ3; and Kvl .5.
- Hormones of interest include, but are not limited to: chorionic gonadotropin; corticotrophin; erythropoietin; glucagons; IGF-1 ; oxytocin; platelet-derived growth factor; calcitonin; follicle- stimulating hormone; luteinizing hormone; thyroid-stimulating hormone; insulin; gonadotropin- releasing hormone; vasopressin; somatostatin; prolactin; adrenocorticotropic hormone; antidiuretic hormone; thyrotropin-releasing hormone; octreotide; human growth hormone; relaxin; growth hormone-releasing hormone; parathyroid hormone; calcitrol; calciferol; atrial-natriuretic peptide; gastrin; secretin; cholecystokinin; leptin; neuropeptide Y; ghrelin; angiotensinogen; dopamine; and thrombopoietin.
- Blood proteins of interest include, but are not limited to: haemoglobin; fibrinogen; factor VII; factor Vila; factor VIII; factor IX; fibrinogen; thrombin; von Willebrand factor.
- Liposomes of the invention are useful as components in pharmaceutical compositions for immunising subjects against various diseases. These compositions will typically include a pharmaceutically acceptable carrier in addition to the liposomes. A thorough discussion of pharmaceutically acceptable carriers is available in reference 31.
- a pharmaceutical composition of the invention may include one or more small molecule immunopotentiators.
- the composition may include a TLR2 agonist ⁇ e.g. Pam3CSK4), a TLR4 agonist ⁇ e.g. an aminoalkyl glucosaminide phosphate, such as E6020), a TLR7 agonist ⁇ e.g. imiquimod), a TLR8 agonist ⁇ e.g. resiquimod) and/or a TLR9 agonist ⁇ e.g. IC31).
- Any such agonist ideally has a molecular weight of ⁇ 2000Da.
- such agonist(s) are also encapsulated with the RNA inside liposomes, but in other embodiments they are unencapsulated.
- compositions of the invention may include the liposomes in plain water ⁇ e.g. w.f.i.) or in a buffer e.g. a phosphate buffer, a Tris buffer, a borate buffer, a succinate buffer, a histidine buffer, or a citrate buffer.
- Buffer salts will typically be included in the 5-20mM range.
- compositions of the invention may have a pH between 5.0 and 9.5 e.g. between 6.0 and 8.0.
- compositions of the invention may include sodium salts ⁇ e.g. sodium chloride) to give tonicity.
- a concentration of 10+2 mg/ml NaCl is typical e.g. about 9 mg/ml.
- compositions of the invention may include metal ion chelators. These can prolong RNA stability by removing ions which can accelerate phosphodiester hydrolysis.
- a composition may include one or more of EDTA, EGTA, BAPTA, pentetic acid, etc..
- chelators are typically present at between 10-500 ⁇ e.g. O.lmM.
- a citrate salt, such as sodium citrate, can also act as a chelator, while advantageously also providing buffering activity.
- compositions of the invention may have an osmolality of between 200 mOsm/kg and 400 mOsm/kg, e.g. between 240-360 mOsm/kg, or between 290-310 mOsm/kg.
- compositions of the invention may include one or more preservatives, such as thiomersal or 2-phenoxyethanol.
- preservatives such as thiomersal or 2-phenoxyethanol.
- Mercury-free compositions are preferred, and preservative-free vaccines can be prepared.
- compositions of the invention are preferably sterile.
- Pharmaceutical compositions of the invention are preferably non-pyrogenic e.g. containing ⁇ 1 EU (endotoxin unit, a standard measure) per dose, and preferably ⁇ 0.1 EU per dose.
- compositions of the invention are preferably gluten free.
- compositions of the invention may be prepared in unit dose form.
- a unit dose may have a volume of between 0.1-1.0ml e.g. about 0.5ml.
- compositions may be prepared as injectables, either as solutions or suspensions.
- the composition may be prepared for pulmonary administration e.g. by an inhaler, using a fine spray.
- the composition may be prepared for nasal, aural or ocular administration e.g. as spray or drops. Injectables for intramuscular administration are typical.
- compositions comprise an immunologically effective amount of liposomes, as well as any other components, as needed.
- 'immunologically effective amount' it is meant that the administration of that amount to an individual, either in a single dose or as part of a series, is effective for treatment or prevention. This amount varies depending upon the health and physical condition of the individual to be treated, age, the taxonomic group of individual to be treated ⁇ e.g. non-human primate, primate, etc.), the capacity of the individual's immune system to synthesise antibodies, the degree of protection desired, the formulation of the vaccine, the treating doctor's assessment of the medical situation, and other relevant factors. It is expected that the amount will fall in a relatively broad range that can be determined through routine trials.
- compositions of the invention will generally be expressed in terms of the amount of RNA per dose.
- a preferred dose has ⁇ 100 ⁇ RNA ⁇ e.g. from 10-100 ⁇ g, such as about 10pg, 25 ⁇ g, 50 ⁇ g, 75 ⁇ g or 100 ⁇ g), but expression can be seen at much lower levels e.g. ⁇ g/dose, ⁇ 100ng/dose, ⁇ 10ng/dose, ⁇ lng/dose, etc
- the invention also provides a delivery device ⁇ e.g. syringe, nebuliser, sprayer, inhaler, dermal patch, etc.) containing a pharmaceutical composition of the invention.
- a delivery device e.g. syringe, nebuliser, sprayer, inhaler, dermal patch, etc.
- This device can be used to administer the composition to a vertebrate subject.
- Liposomes of the invention do not contain ribosomes.
- liposomes and pharmaceutical compositions of the invention are for in vivo use for eliciting an immune response against an immunogen of interest, or for gene therapy.
- the invention provides a method for raising an immune response in a vertebrate comprising the step of administering an effective amount of a liposome or pharmaceutical composition of the invention.
- the immune response is preferably protective and preferably involves antibodies and/or cell- mediated immunity.
- the method may raise a booster response.
- the invention also provides a liposome or pharmaceutical composition of the invention for use in a method for raising an immune response in a vertebrate.
- the invention also provides a liposome or pharmaceutical composition of the invention for use in a method of gene therapy in a vertebrate.
- the invention also provides the use of a liposome of the invention in the manufacture of a medicament for raising an immune response in a vertebrate.
- the vertebrate By raising an immune response in the vertebrate by these uses and methods, the vertebrate can be protected against various diseases and/or infections e.g. against bacterial and/or viral diseases as discussed above.
- the liposomes and compositions are immunogenic, and are more preferably vaccine compositions.
- Vaccines according to the invention may either be prophylactic (i.e. to prevent infection) or therapeutic (i.e. to treat infection), but will typically be prophylactic.
- the vertebrate is preferably a mammal, such as a human or a large veterinary mammal (e.g. horses, cattle, deer, goats, pigs).
- the human is preferably a child (e.g. a toddler or infant) or a teenager; where the vaccine is for therapeutic use, the human is preferably a teenager or an adult.
- a vaccine intended for children may also be administered to adults e.g. to assess safety, dosage, immunogenicity, etc.
- Vaccines prepared according to the invention may be used to treat both children and adults.
- a human patient may be less than 1 year old, less than 5 years old, 1-5 years old, 5-15 years old, 15-55 years old, or at least 55 years old.
- Preferred patients for receiving the vaccines are the elderly (e.g. >50 years old, >60 years old, and preferably >65 years), the young (e.g. ⁇ 5 years old), hospitalised patients, healthcare workers, armed service and military personnel, pregnant women, the chronically ill, or immunodeficient patients.
- the vaccines are not suitable solely for these groups, however, and may be used more generally in a population.
- compositions of the invention will generally be administered directly to a patient.
- Direct delivery may be accomplished by parenteral injection (e.g. subcutaneously, intraperitoneally, intravenously, intramuscularly, intradermally, or to the interstitial space of a tissue; unlike reference 1 , intraglossal injection is not typically used with the present invention).
- Alternative delivery routes include rectal, oral (e.g. tablet, spray), buccal, sublingual, vaginal, topical, transdermal or transcutaneous, intranasal, ocular, aural, pulmonary or other mucosal administration.
- Intradermal and intramuscular administration are two preferred routes. Injection may be via a needle (e.g. a hypodermic needle), but needle-free injection may alternatively be used.
- a typical intramuscular dose is 0.5 ml.
- the invention may be used to elicit systemic and/or mucosal immunity, preferably to elicit an enhanced systemic and/or mucosal immunity.
- Dosage can be by a single dose schedule or a multiple dose schedule. Multiple doses may be used in a primary immunisation schedule and/or in a booster immunisation schedule. In a multiple dose schedule the various doses may be given by the same or different routes e.g. a parenteral prime and mucosal boost, a mucosal prime and parenteral boost, etc. Multiple doses will typically be administered at least 1 week apart (e.g. about 2 weeks, about 3 weeks, about 4 weeks, about 6 weeks, about 8 weeks, about 10 weeks, about 12 weeks, about 16 weeks, etc.).
- multiple doses may be administered approximately 6 weeks, 10 weeks and 14 weeks after birth, e.g. at an age of 6 weeks, 10 weeks and 14 weeks, as often used in the World Health Organisation's Expanded Program on Immunisation (' ⁇ ').
- two primary doses are administered about two months apart, e.g. about 7, 8 or 9 weeks apart, followed by one or more booster doses about 6 months to 1 year after the second primary dose, e.g. about 6, 8, 10 or 12 months after the second primary dose.
- three primary doses are administered about two months apart, e.g. about 7, 8 or 9 weeks apart, followed by one or more booster doses about 6 months to 1 year after the third primary dose, e.g. about 6, 8, 10, or 12 months after the third primary dose.
- halogen includes fluorine, chlorine, bromine and iodine.
- Alkyl alkylene, alkenyl, alkvnyl, cvcloalkyl etc.
- alkyl alkylene
- alkenyl alkynyl
- alkynyl alkynyl
- alkyl includes monovalent, straight or branched, saturated, acyclic hydrocarbyl groups.
- alkyl is Ci-ioalkyl, in another embodiment in another embodiment Ci ⁇ alkyl, such as methyl, ethyl, n-propyl, i-propyl or t-butyl groups.
- cycloalkyl includes monovalent, saturated, cyclic hydrocarbyl groups.
- cycloalkyl is C 3 .iocycloalkyl, in another embodiment C3_ 6 cycloalkyl such as cyclopentyl and cyclohexyl.
- alkoxy means alkyl-O-.
- alkenyl includes monovalent, straight or branched, unsaturated, acyclic hydrocarbyl groups having at least one carbon-carbon double bond and, in one embodiment, no carbon-carbon triple bonds.
- alkenyl is C2-ioalkenyl, in another embodiment C2- 6 alkenyl, in another embodiment C 2 - 4 alkenyl.
- cycloalkenyl includes monovalent, partially unsaturated, cyclic hydrocarbyl groups having at least one carbon-carbon double bond and, in one embodiment, no carbon-carbon triple bonds.
- cycloalkenyl is C3.i 0 cycloalkenyl, in another embodiment C5.i 0 cycloalkenyl, e.g. cyclohexenyl or benzocyclohexyl.
- alkynyl includes monovalent, straight or branched, unsaturated, acyclic hydrocarbyl groups having at least one carbon-carbon triple bond and, in one embodiment, no carbon-carbon double bonds.
- alkynyl is C 2 _ioalkynyl, in another embodiment C2- 6 alkynyl, in another embodiment C 2-4 alkynyl.
- cycloalkynyl includes monovalent, partially unsaturated, cyclic hydrocarbyl groups having at least one carbon-carbon triple bond and, in one embodiment, no carbon-carbon double bonds.
- cycloalkynyl is C3_iocycloalkenyl, in another embodiment Cj.iocycloalkynyl.
- alkylene includes divalent, straight or branched, saturated, acyclic hydrocarbyl groups.
- alkylene is Ci.i 0 alkylene, in another embodiment Ci-ealkylene, in another embodiment Ci ⁇ alkylene, such as methylene, ethylene, n-propylene, i-propylene or t-butylene groups.
- alkenylene includes divalent, straight or branched, unsaturated, acyclic hydrocarbyl groups having at least one carbon-carbon double bond and, in one embodiment, no carbon-carbon triple bonds.
- alkenylene is C 2 .ioalkenylene, in another embodiment C 2 - 6 alkenylene, in another embodiment C 2 - 4 alkenylene.
- alkynylene includes divalent, straight or branched, unsaturated, acyclic hydrocarbyl groups having at least one carbon-carbon triple bond and, in one embodiment, no carbon-carbon double bonds.
- alkynylene is C 2 _ioalkynylene, in another embodiment C 2 _ 6 alkynylene, in another embodiment C 2 ⁇ alkynylene.
- heteroalkyl includes alkyl groups in which up to six carbon atoms, in one embodiment up to five carbon atoms, in another embodiment up to four carbon atoms, in another embodiment up to three carbon atoms, in another embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q , N, P(0) r or Si (and preferably O, S(0) q or N), provided at least one of the alkyl carbon atoms remains.
- the heteroalkyl group may be C-linked or hetero-linked, i.e. it may be linked to the remainder of the molecule through a carbon atom or through O, S(0) confuse N, P(0) r or Si.
- heterocycloalkyl includes cycloalkyl groups in which up to six carbon atoms, in one embodiment up to five carbon atoms, in another embodiment up to four carbon atoms, in another embodiment up to three carbon atoms, in another embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the cycloalkyl carbon atoms remains.
- heterocycloalkyl groups include oxiranyl, thiaranyl, aziridinyl, oxetanyl, thiatanyl, azetidinyl, tetrahydrofuranyl, tetrahydrothiophenyl, pyrrolidinyl, tetrahydropyranyl, tetrahydrothiopyranyl, piperidinyl, 1 ,4-dioxanyl, 1 ,4-oxathiany], morpholinyl, 1 ,4-dithianyl, piperazinyl, 1,4-azathianyl, oxepanyl, thiepanyl, azepanyl, 1,4-dioxepanyl, 1 ,4-oxathiepanyl, 1 ,4-oxazepanyl, 1,4-di thiepanyl, 1,4-thieazepanyl and 1,4-di a
- heteroalkenyl includes alkenyl groups in which up to three carbon atoms, in one embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the alkenyl carbon atoms remains.
- the heteroalkenyl group may be C-linked or hetero-linked, i.e. it may be linked to the remainder of the molecule through a carbon atom or through O, S(0) q or N.
- heterocycloalkenyl includes cycloalkenyl groups in which up to three carbon atoms, in one embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the cycloalkenyl carbon atoms remains.
- heterocycloalkenyl groups include 3,4-dihydro-2H-pyranyl, 5-6-dihydro-2H-pyranyl, 2H-pyranyl, 1,2,3,4-tetrahydropyridinyi and 1,2,5,6-tetrahydropyridinyl.
- the heterocycloalkenyl group may be C-linked or N-linked, i.e. it may be linked to the remainder of the molecule through a carbon atom or through a nitrogen atom.
- heteroalkynyl includes alkynyl groups in which up to three carbon atoms, in one embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the alkynyl carbon atoms remains.
- the heteroalkynyl group may be C-linked or hetero-linked, i.e. it may be linked to the remainder of the molecule through a carbon atom or through O, S(0) q or N.
- heterocycloalkynyl includes cycloalkynyl groups in which up to three carbon atoms, in one embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the cycloalkynyl carbon atoms remains.
- the heterocycloalkenyl group may be C-linked or N-linked, i.e. it may be linked to the remainder of the molecule through a carbon atom or through a nitrogen atom.
- heteroalkylene includes alkylene groups in which up to three carbon atoms, in one embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the alkylene carbon atoms remains.
- heteroalkenylene includes alkenylene groups in which up to three carbon atoms, in one embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the alkenylene carbon atoms remains.
- heteroalkynylene includes alkynylene groups in which up to three carbon atoms, in one embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q or N, provided at least one of the alkynylene carbon atoms remains.
- aryl includes monovalent, aromatic, cyclic hydrocarbyl groups, such as phenyl or naphthyl (e.g. 1-naphthyl or 2-naphthyl).
- the aryl groups may be monocyclic or polycyclic fused ring aromatic groups.
- Preferred aryl are C6-Ci 4 aryl.
- aryl groups are monovalent derivatives of aceanthrylene, acenaphthylene, acephenanthrylene, anthracene, azulene, chrysene, coronene, fluoranthene, fluorene, as-indacene, s-indacene, indene, naphthalene, ovalene, perylene, phenalene, phenanthrene, picene, pleiadene, pyrene, pyranthrene and rubicene.
- arylalkyl means alkyl substituted with an aryl group, e.g. benzyl.
- arylene includes divalent aromatic, cyclic hydrocarbyl groups, such as phenylene.
- the arylene groups may be monocyclic or polycyclic fused ring aromatic groups.
- Preferred arylene are C 6 -Ci 4 arylene.
- arylene groups are divalent derivatives of aceanthrylene, acenaphthylene, acephenanthrylene, anthracene, azulene, chrysene, coronene, fluoranthene, fluorene, as-indacene, s-indacene, indene, naphthalene, ovalene, perylene, phenalene, phenanthrene, picene, pleiadene, pyrene, pyranthrene and rubicene.
- heteroaryl includes monovalent, heteroaromatic, cyclic hydrocarbyl groups additionally containing one or more heteroatoms independently selected from O, S, N and NR N , where R N is defined below (and in one embodiment is H or alkyl (e.g. Ci_ 6 alkyl)).
- the heteroaryl groups may be monocyclic or polycyclic (e.g. bicyclic) fused ring heteroaromatic groups.
- heteroaryl groups contain 5-13 ring members (preferably 5-10 members) and 1 , 2, 3 or 4 ring heteroatoms independently selected from O, S, N and NR N .
- a heteroaryl group may be 5, 6, 9 or 10 membered, e.g. 5-membered monocyclic, 6-membered monocyclic, 9-membered fused-ring bicyclic or 10- membered fused-ring bicyclic.
- Monocyclic heteroaromatic groups include heteroaromatic groups containing 5-6 ring members and 1 , 2, 3 or 4 heteroatoms selected from O, S, N or NR N .
- Examples of 5-membered monocyclic heteroaryl groups are pyrrolyl, furanyl, thiophenyl, pyrazolyl, imidazolyl, isoxazolyl, oxazolyl, isothiazolyl, thiazolyl, 1 ,2,3 triazolyl, 1 ,2,4 triazolyl, 1 ,2,3 oxadiazolyl, 1 ,2,4 oxadiazolyl, 1 ,2,5 oxadiazolyl, 1 ,3,4 oxadiazolyl, 1 ,3,4 thiadiazolyl, pyridyl, pyrimidinyl, pyridazinyl, pyrazinyl, 1 ,3,5 triazinyl, 1 ,2,4 triazinyl, 1 ,2,3 triazinyl and tetrazolyl.
- Examples of 6-membered monocyclic heteroaryl groups are pyridinyl, pyridazin
- Bicyclic heteroaromatic groups include fused-ring heteroaromatic groups containing 9-13 ring members and 1 , 2, 3, 4 or more heteroatoms selected from O, S, N or NR N .
- 9-membered fused-ring bicyclic heteroaryl groups are benzofuranyl, benzothiophenyl, indolyl, benzimidazolyl, indazolyl, benzotriazolyl, pyrrolo[2,3-b]pyridinyl, pyrrolo[2,3-c]pyridinyl, pyrrolo[3,2-c]pyridinyl, pyrrolo[3,2-b]pyridinyl, imidazo[4,5-b]pyridinyl, imidazo[4,5-c]pyridinyl, pyrazolo[4,3-d]pyridinyl, pyrazolo[4,3-c]pyridinyl, pyrazolo[3,4-c]pyridinyl, pyrazolo[3,4-b]pyridinyl, isoindolyl, indazolyl, purinyl, indolininyl, imidazo[l ,2-a]pyri
- 10-membered fused-ring bicyclic heteroaryl groups are quinolinyl, isoquinolinyl, cinnolinyl, quinazolinyl, quinoxalinyl, phthalazinyl, 1 ,6-naphthyridinyl, 1 ,7-naphthyridinyl, 1 ,8-naphthyridinyl, 1 ,5-naphthyridinyl, 2,6-naphthyridinyl, 2,7-naphthyridinyl, pyrido[3,2-d]pyrimidinyl, pyrido[4,3-d]pyrimidinyl, pyrido[3,4-d]pyrimidinyl, pyrido[2,3-d]pyrimidinyl, pyrido[2,3-d]pyrimidinyl, pyrido[2,3-b]pyrazinyl,
- heteroarylalkyl means alkyl substituted with a heteroaryl group.
- heteroarylene includes divalent heteroaromatic, cyclic hydrocarbyl groups additionally containing one or more heteroatoms independently selected from O, S, N and NR N , where R N is defined below (and in one embodiment is H or alkyl (e.g. Ci. 6 alkyl)).
- the heteroarylene groups may be monocyclic or polycyclic (e.g. bicyclic) fused ring heteroaromatic groups.
- heteroarylene groups contain 5- 13 ring members (preferably 5-10 members) and 1, 2, 3 or 4 ring heteroatoms independently selected from O, S, N and NR .
- a heteroarylene group may be 5, 6, 9 or 10 membered, e.g.
- heteroarylene includes divalent derivatives of each of the heteroaryl groups discussed above.
- aryl also include groups that are partially reduced.
- heteroaryl includes fused species in which one of the rings has been reduced to a saturated ring (e.g. l ,2,3,4-tetrahydro-l ,8-naphthyridin-2-yl).
- group a, b or c in formula (I) is "absent", what is meant is that a single bond is present instead, i.e. that the two groups either side of group a, b or c are directly bonded to each other.
- E is replaced by E or E (wherein E cannot be H);
- ⁇ C-H is replaced by ⁇ N or ⁇ P(0) r ;
- R N is H or optionally substituted Ci. 6 alkyl, d. 6 heteroalkyl, C 3 . 6 cycloalkyl, C 3 . 6 heterocycloalkyl, C 2 - 6 alkenyl, C 2 - 6 heteroalkenyl, C 3 . 6 cycloalkenyl, C3. 6 heterocycloalkenyl, phenyl, or heteroaryl containing 5 or 6 ring members.
- R N is preferably H, Ci ⁇ alkyl or C3_ 6 cycloalkyl.
- q is independently 0, 1 or 2. In one embodiment, q is 0.
- r is independently 0 or 1. In one embodiment, r is 0.
- heteroatom containing groups such as heteroalkyl etc.
- a numerical of carbon atoms is given, for instance C 3 _ 6 heteroalkyl
- a C3. 6 heteroalkyl group would, for example, contain less than 3-6 chain carbon atoms.
- a pyridyl group would be classed as a C3 ⁇ 4 heteroaryl group even though it contains 5 carbon atoms.
- Groups of the compounds of the invention may be substituted or unsubstituted, in one embodiment unsubstituted.
- substituents on each group there will generally be 1 to 5 substituents on each group, in one embodiment 1 to 3 substituents, in one embodiment 1 or 2 substituents, in one embodiment 1 substituent.
- One embodiment includes more than one substituent on the same atom, e.g. an acetal group.
- the substituent(s) is/are independently Sub 1 or Sub 2 (in one embodiment Sub 2 ) wherein:
- Z s is independently O, S or R S ;
- R s is independently H or C ⁇ alkyl, Cj ⁇ heteroalkyl, -(Alk a ) r C 3 . 6 cycloalkyl, -(Alk a )rC 3 . 6 heterocycloalkyl, C 2 _ 6 alkenyl, C 2 . 6 heteroalkenyl, -(Alk a ) r C 3 . 6 cycloalkenyl, -(Alk a )rC 3 ⁇ heterocycloalkenyl, C ⁇ alkynyl, C 2 . 6 heteroalkynyl, -(Alk a )rC6-i4aryl,
- Alk a is or Ci_ 6 heteroalkylene
- R s is optionally substituted itself (in one embodiment unsubstituted) by 1 to 3 substituents Sub 2 ;
- Sub 2 is independently halogen, trihalomethyl, trihaloethyl, -N0 2 , -CN, -N + (Ci_ 6 alkyl) 2 0 " , -C0 2 H, -C0 2 Ci. 6 alkyl, -S0 3 H,
- Z 1 is independently O, S, NH or N(Ci. 6 alkyl).
- R s in Sub 1 can be optionally substituted by 1 to 3 substituents Sub 2 , Sub 2 is unsubstituted. However, in one embodiment, R s is unsubstituted.
- R s is H or Ci_ 6 alkyl, optionally substituted by 1 to 3 substituents Sub 2 .
- Sub 1 is not -R s and Sub 2 is not -C 2 . 6 alkenyl, -C 2 - 6 heteroalkenyl, -C 2-6 alkynyl or -C 2-6 heteroalky nyl .
- a group other than Sub 2 has at least 2 positions which may be substituted
- the group may be substituted by both ends of an alkylene, alkenylene, alkynylene, heteroalkylene, heteroalkenylene or heteroalkynylene chain (in one embodiment containing 1 to 6 atoms, in a further embodiment 3 to 6 atoms, and in a further embodiment 3 or 4 atoms) to form a cyclic moiety.
- That chain is optionally substituted by 1 to 3 substituents Sub 2 . In one embodiment that chain is not substituted.
- cycloalkyl cycloalkenyl
- cycloalkynyl cycloalkenyl
- heterocycloalkyl cycloalkenyl
- heterocycloalkynyl cycloalkynyl
- aryl cycloaryl
- heteroaryl includes a species in which a heterocycloalkyl ring is fused to the aromatic ring (e.g. 5,6,7,8-tetrahydro-l ,8-naphthyridin-2-yl).
- a group other than Sub 2 has an atom which may be substituted twice, that atom may be substituted by both ends of an alkylene, alkenylene, alkynylene, heteroalkylene, heteroalkenylene or heteroalkynylene chain (in one embodiment containing 2 to 8 atoms, in a further embodiment 3 to 6 atoms, and in a further embodiment 4 or 5 atoms) to form a cyclic moiety. That chain is optionally substituted by 1 to 3 substituents Sub 2 . In one embodiment that chain is not substituted.
- cycloalkyl examples include spiro species.
- cycloalkenyl when a group has a heteroatom, a substituent may be bonded to the heteroatom.
- “optionally substituted heteroalkyl” includes -CH 2 -N(Sub')-CH 2 -, -CH(Sub')-NH-CH 2 - and -CH(Sub')-N(Sub')-CH 2 - etc.
- the phrase "optionally substituted C3_2o-heterocycloalkyl, C3-2o-heterocycloalkenyl, C3.2 ⁇ rheterocycloalkynyl or C 5 . 2 o-heteroaryl group” means that each of the four items in the list, namely the C3_2o-heterocycloalkyl group, the C3.2o-heterocycloalkenyl group, the C3_2o-heterocycloalkynyl group and the C6-2o-heteroaryl group, may be optionally substituted.
- steroid refers to any group comprising the following structure (which structure is referred to herein as the "steroid skeleton").
- the steroid skeleton has been drawn above as fully saturated.
- the term steroid is also intended to cover instances where there is unsaturation in the steroid skeleton.
- the term steroid covers a group which comprises the fully unsaturated (mancude) basic skeleton, 15//-cyclopenta[a]phenanthrene:
- steroid also covers a group which comprises a partially unsaturated steroid skeleton.
- the term steroid also covers "seco" derivatives of the steroid skeleton, i.e. groups in which ring cleavage has been effected; "nor” and “homo” derivatives of the steroid skeleton which involve ring contraction and expansion, respectively (see Systemic Nomenclature of Organic Chemistry, by D. Hellwinkel, published by Springer, 2001, ISBN: 3-540-41138-0, page 203 for "seco” and page 204 for "nor” and “homo”). In one embodiment, however, such seco derivatives are not encompassed by the term "steroid”.
- such nor derivatives are not encompassed by the term "steroid".
- such homo derivatives are not encompassed by the term "steroid”.
- seco, nor and homo derivatives are not encompassed by the term "steroid”.
- steroid also covers instances where one or more of the carbon atoms in the structure labelled steroid skeleton is replaced by a heteroatom.
- up to six carbon atoms in one embodiment up to five carbon atoms, in another embodiment up to four carbon atoms, in another embodiment up to three carbon atoms, in another embodiment up to two carbon atoms, in another embodiment one carbon atom, are each replaced independently by O, S(0) q , N, P(0) r or Si (and preferably O, S(0) q or N).
- the term "steroid" comprises species in which the "steroid basic skeleton" contains no heteroatoms.
- a steroid ring system is numbered according to the convention set out below.
- steroid encompasses sterols, steroid hormones, bile acids and salts of bile acids.
- a sterol is any steroid with a hydroxyl group at the 3-position of the A-ring.
- the omega-3 position refers to the third bond from the (methyl) terminal of the chain; the omega-6 position refers to the sixth bond from the (methyl) terminal of the chain and the omega-9 position refers to the ninth bond from the (methyl) terminal of the chain.
- composition comprising
- X may consist exclusively of X or may include something additional e.g. X + Y.
- the term "about” in relation to a numerical value x is optional and means, for example, ⁇ 10 ⁇ .
- TLR3 is the Toll-like receptor 3. It is a single membrane-spanning receptor which plays a key role in the innate immune system.
- Known TLR3 agonists include poly(I:C).
- TLR3 is the approved HGNC name for the gene encoding this receptor, and its unique HGNC ID is HGNC: 1 1849.
- the RefSeq sequence for the human TLR3 gene is GI:2459625.
- TLR7 is the Toll-like receptor 7. It is a single membrane-spanning receptor which plays a key role in the innate immune system.
- Known TLR7 agonists include e.g. imiquimod.
- TLR7 is the approved HGNC name for the gene encoding this receptor, and its unique HGNC ID is HGNC: 15631.
- the RefSeq sequence for the human TLR7 gene is GI:67944638.
- TLR8 is the Toll-like receptor 8. It is a single membrane-spanning receptor which plays a key role in the innate immune system.
- Known TLR8 agonists include e.g. resiquimod.
- TLR8 is the approved HGNC name for the gene encoding this receptor, and its unique HGNC ID is HGNC: 15632.
- the RefSeq sequence for the human TLR8 gene is GI:20302165.
- RLR-1 The RIG-I-like receptor (“RLR”) family includes various RNA helicases which play key roles in the innate immune system[39].
- RLR-1 also known as RIG-I or retinoic acid inducible gene I
- RLR-1 has two caspase recruitment domains near its N-terminus.
- the approved HGNC name for the gene encoding the RLR- 1 helicase is "DDX58" (for DEAD (Asp-Glu-Ala-Asp) box polypeptide 58) and the unique HGNC ID is HGNC: 19102.
- the RefSeq sequence for the human RLR-1 gene is GI:77732514.
- RLR-2 (also known as MDA5 or melanoma differentiation-associated gene 5) also has two caspase recruitment domains near its N-terminus.
- the approved HGNC name for the gene encoding the RLR-2 helicase is "IFIH1" (for interferon induced with helicase C domain 1) and the unique HGNC ID is HGNC: 18873.
- the RefSeq sequence for the human RLR-2 gene is GI: 27886567.
- RLR-3 (also known as LGP2 or laboratory of genetics and physiology 2) has no caspase recruitment domains.
- the approved HGNC name for the gene encoding the RLR-3 helicase is "DHX58" (for DEXH (Asp-Glu- X-His) box polypeptide 58) and the unique HGNC ID is HGNC:29517.
- the RefSeq sequence for the human RLR-3 gene is GI: 149408121.
- PKR is a double-stranded RNA-dependent protein kinase. It plays a key role in the innate immune system.
- EIF2AK2 for eukaryotic translation initiation factor 2-alpha kinase 2
- HGNC HGNC:9437
- the RefSeq sequence for the human PKR gene is GI:208431825.
- FIG. 1 shows a gel with stained RNA. Lanes show (1) markers (2) naked replicon (3) replicon after RNase treatment (4) replicon encapsulated in liposome (5) liposome after RNase treatment (6) liposome treated with RNase then subjected to phenol/chloroform extraction.
- FIG. 2 is an electron micrograph of liposomes.
- FIG. 3 shows protein expression (as relative light units, RLU) at day 6 after delivery of RNA in liposomes with various cationic lipids.
- FIG. 4 shows a gel with stained RNA. Lanes show (1) markers (2) naked replicon (3) replicon encapsulated in liposome (4) liposome treated with RNase then subjected to phenol/chloroform extraction.
- FIG. 6 shows protein expression at days 1, 3 and 6 after delivery of four different doses of liposome- encapsulated RNA.
- FIG. 7 shows anti-F IgG titers in animals receiving virion-packaged replicon (VRP or VSRP), l ⁇ g naked RNA, and lpg liposome-encapsulated RNA.
- FIG. 8 shows anti-F IgG titers in animals receiving VRP, l ⁇ g naked RNA, and O. lg or ⁇ g liposome-encapsulated RNA.
- FIG. 9 shows neutralising antibody titers in animals receiving VRP or either O. lg or ⁇ g liposome- encapsulated RNA.
- FIG. 10 shows expression levels after delivery of a replicon as naked RNA (circles), liposome- encapsulated RNA (triangle & square), or as a lipoplex (inverted triangle).
- FIG. 1 1 shows F-specific IgG titers (2 weeks after second dose) after delivery of a replicon as naked RNA (0.01- ⁇ g), liposome-encapsulated RNA (0.01- ⁇ g), or packaged as a virion (VRP, 10 6 infectious units or IU).
- FIG. 12 shows F-specific IgG titers (circles) and PRNT titers (squares) after delivery of a replicon as naked RNA (l g), liposome-encapsulated RNA (0.1 or ⁇ g), or packaged as a virion (VRP, 10 6 IU). Titers in naive mice are also shown. Solid lines show geometric means.
- FIG. 13 shows intracellular cytokine production after restimulation with synthetic peptides representing the major epitopes in the F protein, 4 weeks after a second dose.
- the y-axis shows the % cytokine+ of CD8+CD4-.
- FIG. 14 shows F-specific IgG titers (mean logio titers ⁇ std dev) over 63 days after immunisation of cows at days 0 & 21.
- replicons are used below. In general these are based on a hybrid alphavirus genome with non-structural proteins from Venezuelan equine encephalitis virus (VEEV), a packaging signal from Sindbis virus, and a 3' UTR from Sindbis virus or a VEEV mutant.
- VEEV Venezuelan equine encephalitis virus
- the replicon is about lOkb long and has a poly-A tail.
- Plasmid DNA encoding alphavirus replicons (named: pT7-mVEEV-FL.RSVF or A317; pT7- mVEEV-SEAP or A306; pSP6-VCR-GFP or A50) served as a template for synthesis of RNA in vitro.
- the replicons contain the alphavirus genetic elements required for RNA replication but lack those encoding gene products necessary for particle assembly; the structural proteins are instead replaced by a protein of interest (either a reporter, such as SEAP or GFP, or an immunogen, such as full-length RSV F protein) and so the replicons are incapable of inducing the generation of infectious ⁇ particles.
- a bacteriophage (T7 or SP6) promoter upstream of the alphavirus cDNA facilitates the synthesis of the replicon RNA in vitro and a hepatitis delta virus (HDV) ribozyme immediately downstream of the poly(A)-tail generates the correct 3'-end through its self-cleaving activity.
- HDV hepatitis delta virus
- run-off transcripts were synthesized in vitro using T7 or SP6 bacteriophage derived DNA-dependent RNA polymerase. Transcriptions were performed for 2 hours at 37°C in the presence of 7.5 mM (T7 RNA polymerase) or 5 mM (SP6 RNA polymerase) of each of the nucleoside triphosphates (ATP, CTP, GTP and UTP) following the instructions provided by the manufacturer (Ambion). Following transcription the template DNA was digested with TURBO DNase (Ambion).
- RNA was precipitated with LiCl and reconstituted in nuclease-free water.
- Uncapped RNA was capped post-transcriptionally with Vaccinia Capping Enzyme (VCE) using the ScriptCap m7G Capping System (Epicentre Biotechnologies) as outlined in the user manual; replicons capped in this way are given the "v" prefix e.g. vA317 is the A317 replicon capped by VCE.
- Post-transcriptionally capped RNA was precipitated with LiCl and reconstituted in nuclease-free water. The concentration of the RNA samples was determined by measuring OD 2 60nm- Integrity of the in vitro transcripts was confirmed by denaturing agarose gel electrophoresis.
- RNA was encapsulated in liposomes made essentially by the method of references 7 and 40.
- the liposomes were made of 10% DSPC (zwitterionic), 40% DlinDMA (cationic), 48% cholesterol and 2% PEG-conjugated DMG (2kDa PEG). These proportions refer to the % moles in the total liposome.
- DlinDMA l ,2-dilinoleyloxy-N,N-dimethyl-3-arninopropane
- DSPC l ,2-Diastearoyl-sn-glycero-3-phosphocholine
- Cholesterol was obtained from Sigma-Aldrich.
- PEG-conjugated DMG (1 ,2-dimyristoyl-sn-glycero- 3-phosphoethanolamine-N-[methoxy(polyethylene glycol), ammonium salt), DOTAP (1 ,2-dioleoyl- 3-trimethylammonium-propane, chloride salt) and DC-chol (3 -[N-(N',N'-dimethylaminoethane)- carbamoyl]cholesterol hydrochloride) were from Avanti Polar Lipids.
- FIG. 2 shows an example electron micrograph of liposomes prepared by these methods. These liposomes contain encapsulated RNA encoding full-length RSV F antigen. Dynamic light scattering of one batch showed an average diameter of 141nm (Zav by intensity) or 78nm (by number).
- fresh lipid stock solutions in ethanol were prepared.
- 37 mg of DlinDMA, 11.8 mg of DSPC, 27.8 mg of Cholesterol and 8.07 mg of PEG-conjugated DMG were . weighed and dissolved in 7.55 mL of ethanol.
- Three different conjugated PEGs were used: PEG- 1000, PEG-2000 or PEG-3000.
- the freshly prepared lipid stock solution was gently rocked at 37°C for about 15 min to form a homogenous mixture. Then, 226.7 ⁇ L ⁇ of the stock was added to 1.773 mL ethanol to make a working lipid stock solution of 2 mL.
- RNA was also prepared from a stock solution of ⁇ ⁇ ⁇ ⁇ in 100 mM citrate buffer (pH 6).
- Three 20 mL glass vials (with stir bars) were rinsed with RNase Away solution and washed with plenty of MilliQ water before use to decontaminate the vials of RNAses.
- One of the vials was used for the RNA working solution and the others for collecting the lipid and RNA mixes (as described later).
- the working lipid and RNA solutions were heated at 37°C for 10 min before being loaded into 3cc luer- lok syringes.
- 2 mL of citrate buffer (pH 6) was loaded in another 3 cc syringe.
- RNA and the lipids were connected to a T mixer (PEEKTM 500 ⁇ ID junction) using FEP tubing (fluorinated ethylene-propylene; all FEP tubing used had a 2mm internal diameter and a 3mm outer diameter; obtained from Idex Health Science).
- the outlet from the T mixer was also FEP tubing.
- the third syringe containing the citrate buffer was connected to a separate piece of tubing. All syringes were then driven at a flow rate of 7 mL min using a syringe pump. The tube outlets were positioned to collect the mixtures in a 20 mL glass vial (while stirring).
- the stir bar was taken out and the ethanol/aqueous solution was allowed to equilibrate to room temperature for 1 hour. 4 ml of the mixture was loaded into a 5 cc syringe, which was connected to a piece of FEP tubing and in another 5 cc syringe connected to an equal length of FEP tubing, an equal amount of 100 mM citrate buffer (pH 6) was loaded. The two syringes were driven at 7mL/min flow rate using the syringe pump and the final mixture collected in a 20 mL glass vial (while stirring).
- the mixture collected from the second mixing step were passed through a Mustang Q membrane (an anion-exchange support that binds and removes anionic molecules, obtained from Pall Corporation).
- a Mustang Q membrane an anion-exchange support that binds and removes anionic molecules, obtained from Pall Corporation.
- 4 mL of 1 M NaOH, 4 mL of 1 M NaCl and 10 mL of 100 mM citrate buffer (pH 6) were successively passed through it. Liposomes were warmed for 10 min at 37°C before passing through the membrane.
- liposomes were concentrated to 2 mL and dialyzed against 10-15 volumes of IX PBS using by tangential flow filtration before recovering the final product.
- TFF system and hollow fiber filtration membranes were purchased from Spectrum Labs (Rancho Dominguez) and were used according to the manufacturer's guidelines. Polysulfone hollow fiber filtration membranes with a 100 kD pore size cutoff and 8 cm 2 surface area were used. For in vitro and in vivo experiments formulations were diluted to the required RNA concentration with IX PBS.
- RNA and RNA concentration were determined by Quant-iT RiboGreen RNA reagent kit (Invitrogen), following manufacturer's instructions.
- the ribosomal RNA standard provided in the kit was used to generate a standard curve.
- Liposomes were diluted lOx or lOOx in IX TE buffer (from kit) before addition of the dye. Separately, liposomes were diluted lOx or lOOx in IX TE buffer containing 0.5% Triton X before addition of the dye (to disrupt the liposomes and thus to assay total RNA).
- the syringe/tube method was replaced by a method in which the lipid and RNA solutions are mixed in channels on a microfluidic chip.
- Fresh lipid stock solutions in ethanol were prepared. 37 mg of DlinDMA, 1 1.8 mg of DSPC, 27.8 mg of cholesterol and 8.07 mg of PEG-DMG were weighed and dissolved in 7.55 mL of ethanol. The freshly prepared lipid stock solution was gently rocked at 37°C for about 15 min to form a homogenous mixture. Then, 226.7 ⁇ L ⁇ of the stock was added to 1.773 mL ethanol to make a working lipid stock solution of 2 mL.
- RNA working solution was also prepared from a stock solution of - in 100 mM citrate buffer (pH 6).
- Four 20 mL glass vials (with stir bars) were rinsed with RNase Away solution and washed with plenty of MilliQ water before use to decontaminate the vials of RNAses.
- Two of the vials were used for the RNA working solution (2 mL in each vial) and the others for collecting the lipid and RNA mixes.
- the working lipid and RNA solutions were heated at 37°C for 10 min before being loaded into 3cc luer-lok syringes.
- RNA and the lipids were connected to a Mitos Droplet junction Chip (a glass microfluidic device obtained from Syrris, Part no. 3000158) using PTFE tubing 0.03 inches ID x 1/16 inch OD, (Syrris) using a 4-way edge connector.
- Two RNA streams and one lipid stream were driven by syringe pumps and the mixing of the ethanol and aqueous phase was done at the X junction (100 ⁇ x 105 ⁇ ) of the chip.
- the flow rate of all three streams was kept at 1.5 mL/min, hence the ratio of total aqueous to ethanolic flow rate was 2: 1.
- the tube outlet was positioned to collect the mixtures in a 20 mL glass vial (while stirring).
- the stir bar was taken out and the ethanol/aqueous solution was allowed to equilibrate to room temperature for 1 hour.
- the mixture was loaded in a 5 cc syringe which was fitted to a piece of PTFE tubing 0.03 inches ID x l/16inches OD and in another 5 cc syringe with equal length of PTFE tubing, an equal volume of 100 mM citrate buffer (pH 6) was loaded.
- the two syringes were driven at 3mL/min flow rate using a syringe pump and the final mixture collected in a 20 mL glass vial (while stirring).
- liposomes were concentrated to 2 mL and dialyzed against 10-15 volumes of IX PBS using the TFF system before recovering the final product. Hollow fiber filtration membranes with a 100 kDa pore size cutoff and 20cm 2 surface area were used.
- formulations were diluted to the required RNA concentration with IX PBS.
- liposomes prepared using the syringe/tube method with 75 ⁇ g RNA had a Z average diameter of 148nm and a polydispersity index of 0.122
- the chip mixing gave liposomes with a Z average diameter of 97nm and a polydispersity index of 0.086.
- the proportion of encapsulated RNA decreased slightly from 90% to 87%.
- RNA from liposomes was shown to protect RNA from RNase digestion. Experiments used 3.8mAU of RNase A per microgram of RNA, incubated for 30 minutes at room temperature. RNase was inactivated with Proteinase K at 55°C for 10 minutes. A 1 : 1 v/v mixture of sample to 25:24: 1 v/v/v, phenol:chloroform:isoamyl alcohol was then added to extract the RNA from the lipids into the aqueous phase. Samples were mixed by vortexing for a few seconds and then placed on a centrifuge for 15 minutes at 12k RPM. The aqueous phase (containing the RNA) was removed and used to analyze the RNA.
- FIG. 1 shows that RNase completely digests RNA in the absence of encapsulation (lane 3). RNA is undetectable after encapsulation (lane 4), and no change is seen if these liposomes are treated with RNase (lane 4). After RNase-treated liposomes are subjected to phenol extraction, undigested RNA is seen (lane 6).
- RNA Even after 1 week at 4°C the RNA could be seen without any fragmentation (FIG. 4, arrow). Protein expression in vivo was unchanged after 6 weeks at 4 °C and one freeze-thaw cycle. Thus liposome-encapsulated RNA is stable.
- RNA a reporter enzyme SEAP; secreted alkaline phosphatase
- SEAP secreted alkaline phosphatase
- Expression levels were measured in sera diluted 1 :4 in IX Phospha-Light dilution buffer using a chemiluminescent alkaline phosphate substrate. 8-10 week old BALB/c mice (5/group) were injected intramuscularly on day 0, 50 ⁇ 1 per leg with O. ⁇ g or ⁇ g RNA dose. The same vector was also administered without the liposomes (in RNase free IX PBS) at ⁇ . Virion-packaged replicons were also tested.
- Virion-packaged replicons used herein were obtained by the methods of reference 41, where the alphavirus replicon is derived from the mutant VEEV or a chimera derived from the genome of VEEV engineered to contain the 3' UTR of Sindbis virus and a Sindbis virus packaging signal (PS), packaged by co-electroporating them into BHK cells with defective helper RNAs encoding the Sindbis virus capsid and glycoprotein genes.
- PS Sindbis virus packaging signal
- encapsulation increased SEAP levels by about 1 ⁇ 2 log at the ⁇ g dose, and at day 6 expression from a O. ⁇ g encapsulated dose matched levels seen with l ⁇ g unencapsulated dose.
- day 3 expression levels exceeded those achieved with VRPs (squares).
- VRPs squares
- RNA was formulated in the liposomes relative to the naked RNA control, even at a lOx lower dose. Expression was also higher relative to the VRP control, but the kinetics of expression were very different (see FIG. 5). Delivery of the RNA with electroporation resulted in increased expression relative to the naked RNA control, but these levels were lower than with liposomes.
- the replicon was administered in encapsulated form (with two different purification protocols, O. ⁇ g RNA), or mixed with the liposomes after their formation (a non-encapsulated "lipoplex", 0 ⁇ g RNA), or as naked RNA ( ⁇ g).
- FIG. 10 shows that the lipoplex gave the lowest levels of expression, showing that shows encapsulation is essential for potent expression.
- FIG. 7 shows anti-F IgG titers 2 weeks after the second dose, and the liposomes clearly enhance immunogenicity.
- FIG. 8 shows titers 2 weeks later, by which point there was no statistical difference between the encapsulated RNA at O. ⁇ g, the encapsulated RNA at ⁇ g, or the VRP group.
- Neutralisation titers (measured as 60% plaque reduction, "PRNT60") were not significantly different in these three groups 2 weeks after the second dose (FIG. 9).
- FIG. 12 shows both IgG and PRNT titers 4 weeks after the second dose.
- FIG. 13 confirms that the RNA elicits a robust CD8 T cell response.
- Further experiments compared F-specific IgG titers in mice receiving VRP, O. ⁇ g liposome- encapsulated RNA, or ⁇ g liposome-encapsulated RNA. Titer ratios (VRP: liposome) at various times after the second dose were as follows:
- liposome-encapsulated RNA induces essentially the same magnitude of immune response as seen with virion delivery.
- FIG. 1 1 shows IgG titers in mice receiving the replicon in naked form at 3 different doses, in liposomes at 4 different doses, or as VRP ( 10 6 IU).
- the response seen with l g liposome-encapsulated RNA was statistically insignificant (ANOVA) when compared to VRP, but the higher response seen with 10 ⁇ g liposome- encapsulated RNA was statistically significant (p ⁇ 0.05) when compared to both of these groups.
- FIG. 14 shows F-specific IgG titers over a 63 day period starting from the first immunisation.
- the RNA replicon was immunogenic in the cows, although it gave lower titers than the licensed vaccine. All vaccinated cows showed F-specific antibodies after the second dose, and titers were very stable from the period of 2 to 6 weeks after the second dose (and were particularly stable for the RNA vaccine).
- the cationic lipids of reference 8 are used. These lipids can be synthesised as disclosed in reference 8.
- the liposomes formed above using DlinDMA are referred to hereafter as the "RV01" series.
- the DlinDMA was replaced with various cationic lipids in series “RV02" to “RV12” as described below.
- Two different types of each liposome were formed, using 2% PEG2000-DMG with either (01) 40% of the cationic lipid, 10% DSPC, and 48% cholesterol, or (02) 60% of the cationic lipid and 38% cholesterol.
- a comparison of the (01) and (02) liposomes shows the effect of the neutral zwitterionic lipid.
- RV02 liposomes were made using the following cationic lipid:
- RV03 liposomes were made using the following cationic lipid:
- RV04 liposomes were made using the following cationic lipid:
- RV07 liposomes were made using the following cationic lipid:
- RV08 liposomes were made using the following cationic lipid:
- RV10 liposomes were made using the following cationic lipid:
- RV13 liposomes were made using the following cationic lipid (DOTAP, for comparative purposes):
- RV14 liposomes were made using the following cationic lipid (DC-cholesterol, for comparison):
- RV15 liposomes were made using the following cationic lipid:
- liposomes were tested with the SEAP reporter described above.
- the following table shows the size of the liposomes (Z average and polydispersity index), the % of RNA encapsulation in each liposome, together with the SEAP activity detected at days 1 and 6 after injection.
- SEAP activity is relative to "RV01(02)" liposomes made from DlinDMA, cholesterol and PEG-DMG:
- FIG. 3 illustrates the SEAP expression levels seen at day 6. The best results were seen with RV04, RV05, RV07, RV08, RV09, and RV1 1.
- Liposomes with different lipids were incubated with BHK cells overnight and assessed for protein expression potency. From a baseline with RV05 lipid, expression could be increased 18x by adding 10% l ,2-diphytanoyl-sn-glycero-3-phosphoethanolamine (DPyPE) to the liposome or lOx by adding 10% 18:2 (cis) phosphatidylcholine.
- DPyPE diphytanoyl-sn-glycero-3-phosphoethanolamine
- lOx 10% 18:2 (cis) phosphatidylcholine.
- unsaturated lipid tails tend to enhance IgG titers raised against encoded antigens.
- the vA317 self-replicating replicon encoding RSV F protein was administered to BALB/c mice, 4 or 8 animals per group, by bilateral intramuscular vaccinations (50 ⁇ L ⁇ per leg) on days 0 and 21 with the replicon ( ⁇ g) alone or formulated as liposomes with RV05 or (for comparison) with RV01 or RV13.
- the RV01 liposomes had 40% DlinDMA, 10% DSPC, 48% cholesterol and 2% PEG-DMG, but with differing amounts of RNA.
- the RV05 liposomes had either 40% RV05, 10% DSPC, 48% cholesterol and 2% PEG-DMG or 60% RV05, 38% cholesterol and 2% PEG-DMG.
- the RV13 liposomes had 40% DOTAP, 10% DOPE, 48% cholesterol and 2% PEG-DMG.
- the liposomes were prepared using various techniques.
- naked plasmid DNA (20 ⁇ g) expressing the same RSV-F antigen was delivered either using electroporation or with RV01(10) liposomes (O. ⁇ g DNA).
- RV01(10) liposomes O. ⁇ g DNA
- F-specific serum IgG titers were as follows:
- T cells which are cytokine-positive and specific for RSV F51-66 peptide are as follows, showing only figures which are statistically significantly above zero:
- liposome formulations significantly enhanced immunogenicity relative to the naked RNA controls, as determined by increased F-specific IgG titers and T cell frequencies.
- vA142 encodes the full-length wild type surface fusion (F) glycoprotein of RSV but with the fusion peptide deleted, and the 3' end is formed by ribozyme-mediated cleavage. It was tested in three different mouse strains.
- mice were given bilateral intramuscular vaccinations (50 ⁇ - per leg) on days 0 and 22. Animals were divided into 8 test groups (5 animals per group) and a naive control (2 animals):
- Group 1 were given naked replicon (1 ⁇ g).
- Group 2 were given ⁇ g replicon delivered in liposomes "RV01(37)" with 40% DlinDMA, 10% DSPC, 48% Choi, 2% PEG-conjugated DMG.
- Group 3 were given the same as group 2, but at O. ⁇ g RNA.
- Group 4 were ⁇ g replicon in "RV05(11)" liposomes (40% RV05 lipid, 30% 18:2 PE (DLoPE, 28% cholesterol, 2% PEG-DMG).
- Group 5 were given 5 ⁇ g RSV-F subunit protein adjuvanted with aluminium hydroxide.
- Group 6 were a naive control (2 animals)
- F-specific serum IgG GMTs were:
- F-specific IgGl and IgG2a titers were as follows:
- RSV serum neutralizing antibody titers at days 35 and 49 were as follows (data are 60% plaque reduction neutralization titers of pools of 2-5 mice, 1 pool per group):
- VRPs lxlO 6 IU
- F-specific IgG titers were:
- F-specific IgGl and IgG2a titers were as follows:
- RSV serum neutralizing antibody titers at days 35 and 49 were as follows (data are 60% plaque reduction neutralization titers of pools of 2-5 mice, 1 pool per group):
- F-specific IgG titers were:
- F-specific IgGl and IgG2a titers were as follows:
- RSV serum neutralizing antibody titers at days 35 and 49 were as follows: Thus the different lipids (RVOl & RV05; pKa 5.8 & 5.85) were tested in three different inbred mouse strains. For BALB/c and C3H strains RV05 was less effective than RVOl , but it was more effective in B6 strain. In all cases, however, the liposomes were more effective than two cationic nanoemulsions which were tested in parallel.
- vA142 replicon was also tested in cotton rats using liposomes formed from:
- VRPs (lxlO 6 IU) expressing the full-length wild type surface F glycoprotein of RSV
- F-specific serum IgG titers were as follows:
- RSV serum neutralizing antibody titers were as follows:
- the protein vaccination at day 49 did not boost antibody titers in cotton rats previously vaccinated with protein, but it provided a large boost to titers in cotton rats previously vaccinated with RNA.
- the titers (total IgG and neutralization) were higher at day 64 using RV05 than when using RV01.
- Different cationic lipids with vA317 RSV replicon were higher at day 64 using RV05 than when using RV01.
- HT, SUV and MLV liposomes were also made with RV01 , using the same components at the same proportions, but with manufacturing methods which are non- scalable (but are quicker). Briefly, an ethanol stock solution was created containing 37mg/ml DLinDMA, 12mg/ml DSPC, 28mg/ml cholesterol, and 8 mg/ml of PEG DMG 2000. ⁇ of the stock solution was diluted in a total of 1 ml of ethanol. Liposomes were prepared by evaporating the ethanol solution using a rotary evaporator at 150 milliTorr, pressure for 30 minutes at 50°C.
- lipid film was hydrated and dispersed by adding 1.0 mL of filtered deionized water and placed at 50°C to ensure full suspension of the lipids into MLVs. An aliquot was removed from the MLVs and sonicated with a probe sonicator with a 1 second pulse for 5 minutes at 100% power fo form the SUVs. Both of the resulting solutions were complexed with replicon RNA.
- the HT liposomes were made using an ethanol stock solution containing 37mg/ml DLinDMA, 12mg/ml DSPC, 28mg/ml cholesterol, and 8 mg/ml of PEG DMG 2000.
- ⁇ of the stock solution was diluted to 400 ⁇ 1 with ethanol.
- the resulting ethanol solution was added drop wise to 600 ⁇ 1 of lOmM citrate buffer at pH 6.5 containing 4( ⁇ g of RNA under constant stirring.
- the resulting solution was dialyzed overnight against 4L of PBS buffer using a 10,000 MWCO dialysis membrane.
- mice 8 per group, were given bilateral intramuscular vaccinations (50 ⁇ L ⁇ per leg) on days 0 and 21 with naked replicon ( ⁇ g) or O. ⁇ g encapsulated RNA.
- F-specific serum IgG titers (GMT) 2 weeks after these two injections were as follows:
- Liposome N (with DC-cholesterol) performed poorly, even below the naked RNA control. In contrast, the remaining cationic lipids gave useful results. Liposome O was prepared by a different mixing method (microfluidic chip) from liposome G and this smaller liposome gave better results with approximately the same encapsulation.
- the RV10 lipid in liposome Q has a pKa of 7.86 which seems too high to be useful in vivo. Even inside the useful pKa range of 5.0 to 7.6, however, although results were good, none of the lipids with one alkyl tail and one steroid-containing tail gave results as good as RV01.
- aGC a-galactosylceramide
- a liposome was made with 40% RV05, 10% 18:2 PC, 40% DPyPE, 8% cholesterol and 2% PEG DMG 2000. These liposomes had a Zav diameter of 124.7nm, a pdl of 0.17 and a RNA encapsulation of 61.5%. They were used to vaccinate BALB/c mice as before (O. ⁇ g RNA dose), in comparison with naked RNA ( ⁇ g) or with RV01 -based liposomes (40% DlinDMA, 10% DPSC, 48% cholesterol, 2% PEG DMG 2000).
- F-specific serum IgG titers were as follows:
- RV05 liposomes were more immunogenic than naked RNA, but less immunogenic than RV01 liposomes.
- RV05 gave better results than RV01.
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MX2013002332A MX2013002332A (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of protein-coding rna. |
AU2011295938A AU2011295938B2 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of protein-coding RNA |
EP11763813.0A EP2611420B1 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of protein-coding rna |
RU2013114330/10A RU2577983C2 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of rna encoding protein |
CA2809863A CA2809863A1 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of protein-coding rna |
JP2013526211A JP5908477B2 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposome delivery of protein-encoding RNA |
BR112013004865A BR112013004865A2 (en) | 2010-08-31 | 2011-08-31 | lipids suitable for liposomal delivery of rna protein coders |
ES11763813T ES2727583T3 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal administration of RNA encoding proteins |
CN201180051927.2A CN103384515B (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of protein-coding RNA |
US13/819,228 US20130189351A1 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of protein coding rna |
EP19165057.1A EP3542789A3 (en) | 2010-08-31 | 2011-08-31 | Lipids suitable for liposomal delivery of protein-coding rna |
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AU2011295938A1 (en) | 2013-04-04 |
AU2016201063A1 (en) | 2016-03-10 |
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US20130189351A1 (en) | 2013-07-25 |
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