WO2011146954A1 - Process for the preparation of pleuromutilins - Google Patents

Process for the preparation of pleuromutilins Download PDF

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Publication number
WO2011146954A1
WO2011146954A1 PCT/AT2011/000237 AT2011000237W WO2011146954A1 WO 2011146954 A1 WO2011146954 A1 WO 2011146954A1 AT 2011000237 W AT2011000237 W AT 2011000237W WO 2011146954 A1 WO2011146954 A1 WO 2011146954A1
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WIPO (PCT)
Prior art keywords
compound
formula
hydroxy
acetyl
amino
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PCT/AT2011/000237
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French (fr)
Inventor
Rosemarie Riedl
Werner Heilmayer
Lee Spence
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Nabriva Therapeutics Ag
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Priority to PL11724938T priority Critical patent/PL2576505T3/en
Priority to CA2799029A priority patent/CA2799029C/en
Priority to ES11724938.3T priority patent/ES2659729T3/en
Priority to AU2011257938A priority patent/AU2011257938B2/en
Priority to DK11724938.3T priority patent/DK2576505T3/en
Priority to BR112012029982-4A priority patent/BR112012029982A2/en
Priority to KR1020127030731A priority patent/KR101935333B1/en
Priority to CN201180036554.1A priority patent/CN103080083B/en
Priority to UAA201214910A priority patent/UA108378C2/en
Priority to JP2013511476A priority patent/JP6038021B2/en
Priority to EP17197350.6A priority patent/EP3299356B1/en
Priority to NZ603804A priority patent/NZ603804A/en
Priority to EP11724938.3A priority patent/EP2576505B1/en
Priority to MA35484A priority patent/MA34332B1/en
Application filed by Nabriva Therapeutics Ag filed Critical Nabriva Therapeutics Ag
Priority to SG2012080339A priority patent/SG185104A1/en
Priority to US13/699,589 priority patent/US9120727B2/en
Priority to MX2012013645A priority patent/MX347176B/en
Priority to EA201291370A priority patent/EA023273B1/en
Priority to PL17197350T priority patent/PL3299356T3/en
Publication of WO2011146954A1 publication Critical patent/WO2011146954A1/en
Priority to TNP2012000506A priority patent/TN2012000506A1/en
Priority to ZA2012/08056A priority patent/ZA201208056B/en
Priority to IL222999A priority patent/IL222999A/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/21Esters, e.g. nitroglycerine, selenocyanates
    • A61K31/215Esters, e.g. nitroglycerine, selenocyanates of carboxylic acids
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P17/00Drugs for dermatological disorders
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C319/00Preparation of thiols, sulfides, hydropolysulfides or polysulfides
    • C07C319/14Preparation of thiols, sulfides, hydropolysulfides or polysulfides of sulfides
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C319/00Preparation of thiols, sulfides, hydropolysulfides or polysulfides
    • C07C319/14Preparation of thiols, sulfides, hydropolysulfides or polysulfides of sulfides
    • C07C319/20Preparation of thiols, sulfides, hydropolysulfides or polysulfides of sulfides by reactions not involving the formation of sulfide groups
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C323/00Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups
    • C07C323/23Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and nitrogen atoms, not being part of nitro or nitroso groups, bound to the same carbon skeleton
    • C07C323/39Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and nitrogen atoms, not being part of nitro or nitroso groups, bound to the same carbon skeleton at least one of the nitrogen atoms being part of any of the groups, X being a hetero atom, Y being any atom
    • C07C323/40Y being a hydrogen or a carbon atom
    • C07C323/41Y being a hydrogen or an acyclic carbon atom
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C323/00Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups
    • C07C323/23Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and nitrogen atoms, not being part of nitro or nitroso groups, bound to the same carbon skeleton
    • C07C323/39Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and nitrogen atoms, not being part of nitro or nitroso groups, bound to the same carbon skeleton at least one of the nitrogen atoms being part of any of the groups, X being a hetero atom, Y being any atom
    • C07C323/43Y being a hetero atom
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C323/00Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups
    • C07C323/50Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and carboxyl groups bound to the same carbon skeleton
    • C07C323/51Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and carboxyl groups bound to the same carbon skeleton having the sulfur atoms of the thio groups bound to acyclic carbon atoms of the carbon skeleton
    • C07C323/52Thiols, sulfides, hydropolysulfides or polysulfides substituted by halogen, oxygen or nitrogen atoms, or by sulfur atoms not being part of thio groups containing thio groups and carboxyl groups bound to the same carbon skeleton having the sulfur atoms of the thio groups bound to acyclic carbon atoms of the carbon skeleton the carbon skeleton being acyclic and saturated
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C53/00Saturated compounds having only one carboxyl group bound to an acyclic carbon atom or hydrogen
    • C07C53/08Acetic acid
    • C07C53/10Salts thereof
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C57/00Unsaturated compounds having carboxyl groups bound to acyclic carbon atoms
    • C07C57/02Unsaturated compounds having carboxyl groups bound to acyclic carbon atoms with only carbon-to-carbon double bonds as unsaturation
    • C07C57/13Dicarboxylic acids
    • C07C57/145Maleic acid
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C59/00Compounds having carboxyl groups bound to acyclic carbon atoms and containing any of the groups OH, O—metal, —CHO, keto, ether, groups, groups, or groups
    • C07C59/01Saturated compounds having only one carboxyl group and containing hydroxy or O-metal groups
    • C07C59/08Lactic acid
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07BGENERAL METHODS OF ORGANIC CHEMISTRY; APPARATUS THEREFOR
    • C07B2200/00Indexing scheme relating to specific properties of organic compounds
    • C07B2200/07Optical isomers
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07BGENERAL METHODS OF ORGANIC CHEMISTRY; APPARATUS THEREFOR
    • C07B2200/00Indexing scheme relating to specific properties of organic compounds
    • C07B2200/13Crystalline forms, e.g. polymorphs
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C2601/00Systems containing only non-condensed rings
    • C07C2601/12Systems containing only non-condensed rings with a six-membered ring
    • C07C2601/14The ring being saturated
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C2603/00Systems containing at least three condensed rings
    • C07C2603/56Ring systems containing bridged rings
    • C07C2603/58Ring systems containing bridged rings containing three rings
    • C07C2603/76Ring systems containing bridged rings containing three rings containing at least one ring with more than six ring members
    • C07C2603/80Ring systems containing bridged rings containing three rings containing at least one ring with more than six ring members containing eight-membered rings
    • C07C2603/82Ring systems containing bridged rings containing three rings containing at least one ring with more than six ring members containing eight-membered rings having three condensed rings with in total fourteen carbon atoms and having a having a [5.4.3.0(1,8)] ring structure, e.g. pleuromutiline
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02PCLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
    • Y02P20/00Technologies relating to chemical industry
    • Y02P20/50Improvements relating to the production of bulk chemicals
    • Y02P20/55Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups

Definitions

  • the present invention relates to crystalline 14-0- ⁇ [(4-amino-2-hydroxy-cyclohexyl)- sulfanyl] -acetyl ⁇ -mutilin, new processes for its preparation and crystalline salts thereof.
  • Pleuromutilin a compound of formula
  • pleuromutilins having the principle ring structure of pleuromutilin and being substituted at the primary hydroxy group have been developed, e.g. as antimicrobials. Due to their pronounced antimicrobial activity, a group of pleuromutilin derivatives, amino- hydroxy-substituted cyclohexylsulfanylacetylmutilins, as disclosed in WO 2008/113089, have been found to be of particular interest.
  • the ICH guideline on impurities in new drug substances includes the following thresholds:
  • ICH thresholds it is desirable to have all individual unknown impurities below 0.10% area and the structure elucidated impurities below 0.15%, respectively.
  • Processes provided according to the present invention enable to produce APIs (Active Pharmaceutical Ingredients) within the desired specifications and fulfilling ICH requirements.
  • the crystalline intermediates yields to significant chiral enrichment which has a huge benefit in the production of the pure stereoisomers starting from cheaper racemic materials or less chirally pure starting materials.
  • the described processes do not involve any chromatographic purification neither normal nor chiral phase in contrast to the synthetic procedures described in WO2008/113089 wherein is disclosed e.g. in Example 1, Step B that 14-0- ⁇ [(4-amino-2-hydroxy-cyclohexyl)-sulfanyl]- acetyl ⁇ -mutilins was isolated in the form of diastereomeric mixtures as colorless amorphous foams after normal phase chromatography.
  • WO2008/113089 have been found; e.g. surprisingly the chemical stability of the crystalline salts of the present invention is improved over the amorphic salt forms; and also and in addition the crystalline salts of the present invention show a surprising low hygroscopicity.
  • the present invention provides a process for the preparation of a compound of formula I
  • R is an amine protecting group, and isolating a compound of formula I obtained in the form of a single diastereomer in crystalline form either directly from the reaction mixture or via recrystallization in organic solvent.
  • the present invention provides a compound of formula I as defined above in the form of a single stereoisomer in crystalline form.
  • the present invention provides a compound of formula Ha.
  • a compound of formula I, or Ha the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the sulfanyl-acetyl-mutilin group are attached are all in the R configuration and thus a compound of formula I, or Ila represents an optionally amine protected 14-0- ⁇ [(l ?,2i?,4 ?)-4-amino-2-hydroxy-cyclohexylsulfanyl]- acetyl ⁇ -mutilin.
  • lb an optionally amine protected 14-0- ⁇ [(l ?,2i?,4 ?)-4-amino-2-hydroxy-cyclohexylsulfanyl]- acetyl ⁇ -mutilin.
  • a compound of formula lib represents an optionally amino protected 14-0- ⁇ [(lS,2S,4S)-4-Amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin.
  • An amine protecting group includes protecting groups known to a skilled person and which are removable under acidic, basic, hydrogenating, oxidative or reductive methods, e.g. by hydrogenolysis, treatment with an acid, a base, a hydride, a sulfide. Appropriate amine protecting groups e.g. are described in T. W. Greene, P. G. M. Wuts, Protective Groups in Organic Synthesis, Wiley-Interscience, 4 th edition, 2007, particularly p. 696-868.
  • Amine protecting groups which may be conveniently used in a process according to the present invention include for example
  • FMOC 9-fluorenylmethyloxycarbonyl
  • PMB - ?-methoxybenzyl
  • DMPM 3,4-dimethoxybenzyl
  • Tos - tosyl (Tos), removable e.g. by treatment with concentrated acid, such as HBr, H 2 S0 4 , or by treatment with strong reducing agents, such as sodium in liquid ammonia, sodium naphthalene,
  • amine sulfonamides other than Tos-amides e.g. including 2- nitrobenzenesulfonamide (nosyl) or o-nitrophenylsulfenyl (Nps), removable e.g.by treatment with samarium iodide, tributyltin hydride,
  • trifluoroacetyl or tert-butyloxycarbonyl BOC
  • a base e.g. an inorganic base, such as NaOH, KOH, Cs 2 C0 3 and 2C0 3 or an organic base such as ethanolamine may be used to effect deprotection of a compound of formula Ila and lib to obtain a compound of formula I in the form of a single stereoisomer.
  • an inorganic base such as NaOH and 2 C0 3 is used.
  • an acid e.g. an inorganic, such as a mineral acid, or an organic acid may be used to effect deprotection of a compound of formula Ila and lib to obtain a compound of formula I in the form of a single stereoisomer.
  • an organic acid such as trifluoroacetic acid (TFA), or a mineral acid, such as ortho phosphoric acid is used.
  • the nitrogen atom to which R is attached form a heterocyclic ring, e.g. the nitrogen atom attached to the cyclohexyl group is part of a phthalimido ring; removable, e.g. by treatment with hydrazine.
  • the hydrogen at the nitrogen is not present (see example 17).
  • a compound of formula I may be crystallized after isolation, or even directly in the reaction mixture obtained after deprotection of the amine group.
  • a solution of a compound of formula I in a single stereoisomeric form obtained in organic solvent, preferably polar organic solvent, such as CH 2 CI 2 is treated with an antisolvent, such as an ether, e.g. diisopropylether (DIPE) or tert-butyl methyl ether (MTBE), preferably DIPE; or a solution of a compound of formula I in a single stereoisomeric form obtained in organic solvent, preferably polar organic solvent, such as CH 2 CI 2 , is treated with an antisolvent, such as an ether, e.g. diisopropylether (DIPE) or tert-butyl methyl ether (MTBE), preferably DIPE; or a solution of a compound of formula I in a single stereoisomeric form obtained in organic solvent, preferably polar organic solvent, such as CH 2
  • organic solvent preferably polar organic solvent, such as CH 2 Cl2
  • organic solvent preferably an alcohol, such as n-butanol
  • stereoisomeric form is taken up in an organic solvent, such as an ether, e.g. tetrahydrofuran (THF), and optionally treated with an antisolvent, such as an ether, e.g. DIPE or MTBE.
  • an organic solvent such as an ether, e.g. tetrahydrofuran (THF)
  • an antisolvent such as an ether, e.g. DIPE or MTBE.
  • a compound of formula I in a single stereoisomeric form may crystallize and may be isolated in crystalline form.
  • the crystalline compounds obtained according to the present invention may be subjected to further purification, such as recrystallization e.g. out of an organic solvent, preferably an alcohol, such as n-butanol.
  • (Re)crystallization may be repeated if desired and may result in high recovery yields and excellent purification.
  • the purity of a compound of formula I after deprotection of a compound of formula Ila was increased from 87.3% to 95.0% after crystallization and isolation out of DCM (CH 2 C1 2 ) / DIPE.
  • the purity is further increased by w-butanol (re-)crystallizations to a final purity of the isolated compound of formula I of even 99.7%.
  • Crystallization may be enhanced and accelerated by the use of seed crystals. Seed crystals may be obtained by the processes as exemplified herein. The crystallization and
  • the present invention provides a compound of formula I in single stereoisomeric form in crystalline form.
  • the present invention provides 14-O- ⁇ [(li?,2 ⁇ ,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin in crystalline Form 1, e.g. which crystalline Form 1 is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ⁇ 0.2, inter alia):
  • the present invention provides 14-O- ⁇ [(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl ⁇ -mutilin in crystalline Form 2, obtained as an 1:1 n-butanol solvate, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ⁇ 0.2, inter alia):
  • the «-butanol content of 14-O- ⁇ [(li?,2 ?,4 ⁇ )-4-amino-2-hydroxy-cyclohexylsulfanyl]- acetyl ⁇ -mutilin in crystalline Form 2 is between 10 and 18 % w/w, typically between 11 and 14% w/w.
  • a compound of formula I is preferably isolated in the form of a salt, such as a
  • Such salts are preferably ammonium salts, namely acid addition salts of the amino group attached to the cyclohexyl ring, and include acetates, lactates, e.g. L-lactates, or maleates, e.g. hydrogenmaleates.
  • the present invention provides a compound of formula I in the form of a single stereoisomer and in the form of a salt, e.g. crystalline salt, wherein a compound of formula I is in the form of a single stereoisomer; the salt preferably is an acetate, lactate, e.g. L-lactate or maleate, e.g. hydrogenmaleate.
  • Crystalline compounds obtained according to the present invention in a single steroisomeric form of formula I, e.g. in the form of a salt, are useful in a pharmaceutical composition.
  • the present invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising crystalline 14-0- ⁇ [(( 1 R,2R,4R)-4-arnino-2-hydroxy-cyclohexyl)sulfanyl] acetyl ⁇ mutilin, or comprising an, optionally crystalline, acetate, lactate, or hydrogenmaleate of 14-0- ⁇ [((lR,2R,4R)-4-amino-2-hydroxy-cyclohexyl)sulfanyl] acetyl ⁇ mutilin as an active ingredient in combination with pharmaceutically acceptable carrier or diluent.
  • a compound of formula I in free form and in single stereoisomeric form thus obtained may be converted into a salt by addition of an acid to the free base of a compound of formula I.
  • a compound of formula I may be dissolved or suspended, or is obtained in dissolved or suspended form, in organic solvent, preferably a solvent or solvent mixture, such as an alcohol, e.g. methanol, ethanol; a halogenated hydrocarbon, e.g. dichloromethane; an ether, e.g.
  • tetrahydrofuran an acetate, such as methyl acetate, ethyl acetate, propyl acetate, isopropyl acetate; a solvent mixture of alcohol with acetate, such as methanol/isopropyl acetate, a solvent mixture of halogenated hydrocarbon with acetate, such as
  • dichloromethane/isopropylacetate a solvent mixture of ether with acetate, such as tetrahydrofuran/ isopropyl acetate, and to the mixture obtained an acid, e.g. an organic acid or ' an inorganic (mineral) acid, e.g. acetic acid, lactic acid, e.g. L-lactic acid, maleic acid, is added.
  • an acid e.g. an organic acid or ' an inorganic (mineral) acid, e.g. acetic acid, lactic acid, e.g. L-lactic acid, maleic acid
  • a compound of formula I in the form of a salt, e.g. crystalline salt, may be obtained and may be isolated.
  • solubility of pharmaceutical active compounds is an important property for the in vivo availability e.g. oral bioavailability.
  • solubility of the selected form e.g. salt is also very crucial and it is desired of having formulations without sophisticated technologies or exipients.
  • the solubility of the crystalline acetate, lactate and (hydrogen)maleate salts of the present invention in water and aqueous based vehicles such as 0.9% NaCl solution or in biorelevant media such as FaSSIF (Fasted State Simulated Intestinal Fluid) and FeSSIF (Fed State Simulated Intestinal Fluid) is surprisingly high, which make the crystalline salts of the present invention even more pharmaceutically viable.
  • the antimicrobial, e.g. antibacterial activity of 14-0- ⁇ [(4-amino-2-hydroxy-cyclohexyl)- sulfanyl]-acetyl ⁇ -mutilins was outlined in WO2008/113089.
  • the compounds of the present invention e.g. compound of formula I show antimicrobial, e.g. antibacterial, activity against Gram-positive bacteria, such as coagulase positive Staphylococci, e.g.
  • Staphylococcus aureus and Streptococci e.g. Streptococcus pneumoniae, e.g. exhibiting MICs ⁇ 0.4 ⁇ against Staphylococcus aureus ATCC49951 and Streptococcus pneumoniae ATCC49619.
  • the minimum inhibitory concentration (MIC) was determined in accordance with CLSI recommendations.
  • the present invention provides crystalline 14-O- ⁇ [(l ?,2i?,4/?)-4-amino-2- hydroxy-cyclohexylsulfanyl] -acetyl ⁇ -mutilin in the form of an acetate in crystalline Form A, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ⁇ 0.2, inter alia):
  • the present invention provides crystalline 14-O- ⁇ [(li?,2i?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl ⁇ -mutilin in the form of an acetate in crystalline Form B, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ⁇ 0.2, inter alia):
  • the present invention provides crystalline 14-0- ⁇ [(li?,2 ?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl] -acetyl ⁇ -mutilin in the form of an L-lactate in crystalline Form 1, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ⁇ 0.2, inter alia):
  • the present invention provides crystalline 14-O- ⁇ [(li-,27?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl ⁇ -mutilin in the form of a hydrogenmaleate in crystalline Form 1, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2- theta at (degrees, ⁇ 0.2, inter alia):
  • a compound of formula I in the form of a (crystalline) free base exhibits the same order of pharmaceutical activity, such as antimicrobial activity, than a compound of the present invention in the form of a (crystalline) salt.
  • a compound of formula Ila in the form of a single stereoisomer or the mixture of a compound of formula Ila with a compound of formula lib may be prepared as appropriate, e.g. according, e.g. analogously to a method as conventional.
  • a compound of formula Ila in the form of a single stereoisomer or the mixture of compound of formula Ila with a compound of formula lib are prepared by coupling an amino-hydroxy-mercapto- cyclohexane compound of formula Ilia, or a mixture of a compound of formula Ilia with a compound of formula Illb, wherein the amino group is protected with an amino protecting group with an activated 14-O-acetyl-mutilin.
  • the present invention provides a process according to the present invention, wherein a compound of formula Ila, or a mixture of a compound of formula Ila with a compound of formula lib is obtained by coupling
  • AKT is an activating group, optionally mesyl, besyl, tosyl, or -O-AKT is halogen; optionally 14-O-AKT-acetyl- mutilin is a compound of formula
  • the present invention provides a compound of formula Ilia in a single stereoisomeric form.
  • a compound of formula Ilia the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the R configuration and thus a compound of formula Ilia represents an optionally amino protected (li?,2i?,4/?)-4-amino-2- hydroxy-l-mercapto-cyclohexane; and in a compound of formula Mb, respectively, the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the S configuration and thus a compound of formula Illb represents an optionally amino protected (lS,25,45)-4-amino-2-hydroxy-l-rnercapto- cyclohexane.
  • the coupling reaction may be also performed in a single solvent system, e.g. in organic solvent such as a halogenated hydrocarbon, e.g. chlorobenzene, dichloromethane, an aromatic solvent such as toluene, a nitrile such as acetonitrile or an ether, e.g. tert-butyl-methylether, tetrahydrofuran, in the presence of base, preferably an organic base, such as DBU.
  • organic solvent such as a halogenated hydrocarbon, e.g. chlorobenzene, dichloromethane, an aromatic solvent such as toluene, a nitrile such as acetonitrile or an ether, e.g. tert-butyl-methylether, tetrahydrofuran
  • base preferably an organic base, such as DBU.
  • the coupling reaction is performed in organic solvent, e.g. an apolar solvent, such as an ether, e.g. tert-butyl methyl ether (MTBE) or polar solvent, such as a halogenated hydrocarbon, e.g. dichloromethane; preferably in the presence of an aqueous base solution, such as aqueous NaOH; or in the presence of base in the organic solvent, such as DBU, DBN, preferably in the presence of a phase transfer catalyst in case of using an aqueous base solution, such as benzyl-tri-butylammonium chloride.
  • apolar solvent such as an ether, e.g. tert-butyl methyl ether (MTBE) or polar solvent, such as a halogenated hydrocarbon, e.g. dichloromethane
  • an aqueous base solution such as aqueous NaOH
  • base in the organic solvent such as DBU, DBN
  • a phase transfer catalyst in
  • a compound of formula Ilia in the form of a single stereoisomer or the mixture of a compound of formula Ilia with a compound of formula Hlb, respectively, may be prepared as appropriate, e.g. according, e.g. analogously to a method as conventional.
  • a compound of formula Ilia or the mixture of compound of formula Ilia with a compound of formula Mb, respectively are prepared by deprotecting the thiol function in an amino- hydroxy-mercapto cyclohexane, wherein the amino group and the thiol group both are protected.
  • the present invention provides a process according to the present invention, wherein a compound of formula Ma, or a mixture of a compound of formula Ma with a compound of formula Mb is obtained by deprotecting the thiol function either in a compound of formula IVa
  • R is as defined above and Ri is a thiol protecting group
  • a thiol protecting group e.g. in the meaning of Ri in a compound of formulae IVa and IVb according to the present invention, includes e.g.
  • alkyl optionally is further substituted, e.g. further substiuted by (C 6- i 2 )aryl such as phenyl, such as a trityl; e.g. removable by strong acid or AgN0 3 treatment, — (Ci- ⁇ 5)alkylcarbonyl, e.g. acetyl, e.g. removable by base, such as sodium methoxide, treatment,
  • C6-i2)arylcarbonyl such as a benzoyl, e.g. removable by treatment with reduction agent, such as DIBAL, or by treatment with a base, such as hydrazine,
  • a compound of formula IVa the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the R configuration and thus a compound of formula IVa represents an amine and thio protected (l ?,27?,4i?)-4-amino-2- hydroxy-l-mercapto-cyclohexane; and in a compound of formula IVb the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the S configuration and thus a compound of formula IVb represents an amino and thio protected (lS,2S,4 ⁇ S)-4-amino-2-hychoxy-l-mercapto-cyclohexane.
  • Deprotection of the thiol group is carried out as appropriate, e.g. by use of a cleaving agent, e.g. hydrazine hydrate.
  • the deprotection reaction is carried out in an organic solvent, such as a halogenated hydrocarbon, e.g. chlorobenzene, dichloromethane, an aromatic solvent such as toluene, a nitrile such as acetonitrile or an ether, e.g. tert-butyl-methylether,
  • a compound of formula IVa or a mixture of compound of formula IVa with a compound of formula IVb, respectively may be obtained as appropriate, e.g. analogously to a method as conventional or as described herein, e.g. in the example part.
  • stereoisomer comprising using a compound of formula lla in the form of a single stereoisomer, or a mixture of compound of formula lla with a compound of formula lib, respectively, and/or comprising using a compound of formula Ilia in the form of a single stereoisomer, or a mixture of a compound of formula Ilia with a compound of formula Illb, respectively, and/or using a compound of formula IVa in the form of a single stereoisomer, or a mixture of a compound of formula IVa with a compound of formula IVb, respectively, as an intermediate, and
  • the present invention provides a process for the production of a compound of formula I in the form of a single stereoisomer, comprising coupling a compound of formula Ilia in the form of a single stereoisomer, or a mixture of a compound of formula Ilia with a compound of formula Illb, respectively, wherein R is as defined above, with an activated 14-O-AKT-acetyl-mutilin, wherein AKT is an activating group, such as a mesyl, besyl or tosyl group, or -O-AKT is halogen, preferably AKT is a tosyl group,
  • a compound of formula Ilia in the form of a single stereoisomer or a mixture of a compound of formula Ilia with a compound of formula Illb, respectively, wherein R is as defined above is obtained by deprotection of the thiol function in a compound of formula IVa in the form of a single stereoisomer, or in a mixture of a compound of formula IVa with a compound of formula IVb, wherein R and Ri are as defined above.
  • amine protecting group in a compound of formula Ila, lib, Ilia, Illb, IVa or IVb conventional amino protecting groups may be used, preferably a trifluoroacetyl or tert- butoxycarbonyl group. If appropriate the amine protecting group R in a compound of formula Ila, lib, Ilia, Illb, IVa or IVb may be changed, in a way that the carbon atom of the cyclohexyl ring to which the amine group is attached does not change its configuration, i.e. does not change stereochemistry, e.g. via deprotection of the amine group, followed by protection with a different amine protecting group.
  • the processes of the present invention enables the isolation of compounds of formula I in the form of a single stereoisomer in crystalline form.
  • the process controls, when starting from chiral pure starting materials, stereochemistry and yields products in the form of single stereoisomers whereby no sophisticated methods like chromatography, e.g. normal phase or chiral phase, e.g. chiral HPLC, are necessary to separate the mixtures of
  • the processes according to the present invention control even more surprisingly the chiral purity of a compound of formula I again via surprising properties of crystalline compound I.
  • the surprising properties of crystalline compound I enable to start from much less expensive diastereomeric mixtures.
  • the chiral purity is controlled at the crystalline compound I whereby compound I is isolated in the form of a crystalline solid and the unwanted diastereomer is depleted to the mother liquor.
  • Step B of WO 2008/113089 the mixture of 14-0- ⁇ [(l ?,2i?,4 ?)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl ⁇ -mutilin (compound I of the present invention) and 14-O- ⁇ [(liS',25',4S)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl ⁇ - mutilin are isolated as amorphous foams.
  • Example 1 A in WO 2008/113089 describes the separation of the diastereomers via chiral chromatography and the separated 14-O- ⁇ [(li?,2i?,4i?)-4-amino-2-hydroxy-cyclohexylsulfanyl] -acetyl ⁇ -mutilin (compound I of the present invention) and H-O-lfiliS ⁇ S ⁇ -amino ⁇ -hydroxy-cyclohexylsulfanylj-acetyl ⁇ - mutilin (compound lb of the present invention) are again isolated as amorphous foams.
  • the present invention further relates to a novel crystalline forms of 14-0- ⁇ [(lR,2R,4R)-4- amino-2-hydroxy-cyclohexylsulfanyl]-acetyl ⁇ -mutiIin in the form of an acetate, L-lactate or hydrogenmaleate.
  • 14-0- ⁇ [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl ⁇ - mutilin may be converted to the crystalline salt forms using a crystallization process in organic medium with the salt forming agent.
  • the process for the production of the novel crystalline salts may be enhanced and accelerated by the use of seed crystals. Seed crystals may be obtained by the exemplified processes.
  • the crystalline salts of the present invention retain the stereochemistry of a compound of formula I in free form in the form of a single stereoisomer.
  • the crystalline salts according to the present invention have clear unexpected advantages i.e. enhanced stability over the corresponding amorphous salt forms, as e.g. is evident from TABLE 4.
  • the hygroscopicity of the crystalline salts of the present invention is small between relevant humidity levels, i.e. between 0-80% relative humidity with a water uptake of below 2% making the salts in conjunction with the excellent chemical stability pharmaceutically viable.
  • the crystalline salts of the present invention are of desired and consistent chemical and chiral purity, have better stability compared to the amorphous lyophilized forms, being advantageous in the storage and for the preparation of pharmaceutical compositions.
  • No crystalline salt form of a compound of formula I has been described before , e.g. in WO 2008/113089.
  • the crystalline salt forms of a compound of formula I have excellent purities and the observed stability was not only superior to the amorphous salt forms but have proofen to be absolutely pharmaceutically viable within the range of normal storage conditions.
  • Particularly preferred compounds of the present invention include the compounds of Examples 1 to 17, e.g. a compound selected from the group consisting of
  • Fig. 1 the Powder Diffractogram of 14-O- ⁇ [(l/?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin, Form 1 is indicated.
  • Fig. 2 shows the Powder diffractogram of 14-O- ⁇ [(li?,2 ?,4 ?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin, Form 2.
  • Fig. 3 shows the Powder diffractogram of 14-O- ⁇ [(l/?,2/?,4 ?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl ⁇ -mutilin in the form of an acetate, Form A.
  • Fig. 4 shows the Powder diffractogram of 14-O- ⁇ [(l/?,2/?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin in the form of an acetate, Form B.
  • Fig. 5 shows the Powder diffractogram of 14-O- ⁇ [(12?,2i?,4 ?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl ⁇ -mutilin in the form of an L-lactate, Form 1.
  • Fig. 6 shows the Powder diffractogram of 14-0- ⁇ [(l/?,2if,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl ⁇ -mutilin in the form of a hydrogenmaleate, Form 1.
  • REACTION SCHEME 1 represents an amino protecting group and and Ri represents a sulfur protecting group and are as defined above.
  • the process for the synthesis of a compound of formula I starting from the mixtures of Ila with lib, Ilia with Illb and IVa with IVb is summarized in REACTION SCHEME 2 below:
  • REACTION SCHME 2 represents an amino protecting group and and Ri represents a sulfur protecting group (R and Ri as defined above).
  • R and Ri represents a sulfur protecting group
  • a "strip weight assay" as indicated in the examples is defined as follows: The content of an aliquot of a batch or of the whole batch is determined by removing the solvent and determining the content by HPLC or NMR using an internal or external standard and/or subtracting known impurities from the compound. In case of taking an aliquot a back extrapolation to the total mass/volume is performed.
  • a "line rinse” as indicated in the examples is a system rinse using an appropriate solvent to minimize losses of product and input materials.
  • Tos-PLEU is a compound of formula
  • PLEU is a residue of formula
  • Any compound of the present invention may be obtained as appropriate, e.g. analogously to a method as conventional or as described herein.
  • 22-O-Tosylpleuromutilin is a known compound from literature. However a preparation procedure is outlined below.
  • the solid was dried under vacuum at ⁇ 40 °C for at least 12 h.
  • the organic phase obtained was washed with 19 L of IM aqueous NaOH solution, twice with 20 L of 0.1 M phosphoric acid, 20 L of 10% aqueous NaHC0 3 solution and twice with 20 L of water.
  • the organic liquors obtained were concentrated, the concentrate obtained was taken up in 7.46 Kg of 2-propanol, the mixture obtained was concentrated again and dried in vacuo at ⁇ 40°C. 6.66 Kg of 14-O- ⁇ [( 1 -3 ⁇ 4,2i?,4i?)-4-/ert-Butoxycarbonylamino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl ⁇ -mutilin in the form of a white foam was obtained.
  • Step A 14-O- ⁇ [(li?.2i?,4i?)-4-Amino-2Thvdroxy-cyclohexylsulfanvn-acetvU-mutilin in crystalline Form 1
  • the mixture obtained was cooled to 0 to 5°C and 51 L of 30% aqueous K2CO3 solution was added over 1 h at ⁇ 25°C.
  • the mixture obtained was warmed to rt, stirred for 30 min and the pH of the aqueous layer was determined.
  • a further 15 L of 30% aqueous K 2 C0 3 solution was added at ⁇ 25°C, the mixture obtained was stirred at 15°C to 25 °C for 30 min and the two phases obtained were separated.
  • the aqueous phase obtained was extracted with 51 L of CH2CI2 and the combined organic phases were washed with 51 L of purified water.
  • the mixture obtained was concentrated to a volume of 25 L, 33.6 Kg of CH 2 C1 2 was added and the mixture obtained was concentrated to 25 L. To the concentrate obtained 33.6 Kg of CH 2 C1 2 was added and the mixture obtained was concentrated to 10 L. The concentration residue obtained was cooled to 18 to 22°C and 50 L of di-wopropyl ether was added over a period of 1 h. The slurry obtained was stirred at 15 to 25°C for a minimum of 2 h, filtered and the solid obtained was washed with 10 L of di-wopropyl ether and was dried.
  • Step B 14-O- ⁇ r(l-R.2i?,4j?)-4-amino-2-hvdroxy-cvclohexylsulfanyl1-acetv -mutilin. in crystalline Form 2
  • the concentrate obtained was dissolved in 4.5 L of CH 2 C1 2 , the solution obtained cooled to 0 to 5°C and the pH was adjusted to pH 11 with aqueous 3.6 L 2CO3 (2.5M) solution.
  • the biphasic mixture obtained was warmed to 15 to 20°C and stirred for 5 to 10 minutes.
  • the layers obtained were separated, the aqueous phase obtained was extracted with 1.8 L of CH 2 C1 2 , the organic phases obtained were combined, washed with 2.3 L of H 2 0, dried over Na 2 S0 4 and concentrated to dryness under vacuum at ⁇ 40°C.
  • Crude 14-0- ⁇ [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl ⁇ -mutilin was obtained. Yield: 744 g
  • the ⁇ NMR pattern confirms the structure of 14-O- ⁇ [(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin.
  • the NMR pattern for 14-O- ⁇ [(l ?,2i?,4/?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl ⁇ -mutilin is described in example 4.
  • the mixture obtained was cooled to 15 to 20 °C and washed with 158.6 ml of 2 M HC1 solution.
  • the phases obtained were separated, the aqueous phase obtained was returned to the vessel, 158.6 ml of saturated aqueous NaCl solution was added and the mixture obtained was back extracted with 2 x 78.8 ml of CH 2 C1 2 .
  • the combined organic phases obtained were washed with 90.6 ml of saturated aqueous NaCl solution and the organic layer obtained was concentrated to 2 volumes in vacuo at ⁇ 40°C. To the concentrate obtained 226.5 ml of CH 2 C1 2 was added and the mixture obtained was concentrated to 2 volumes.
  • the mixture obtained was washed with 2 x 222.5 ml of 2M H 2 S0 4 followed by 2 x 222.5 ml of 5 % aqueous NaHC0 3 solution and the mixture obtained was concentrated to dryness in vacuo at 40 °C.
  • Step A 2.2.2-Trifluoro-N-r(l/?,3i?,4i?V3-hvdroxy-4-mercapto-cyclohexyl1-acetamide 5.79 g of ⁇ (l ?,2i?,4 ?)-4-[(2,2,2-Trifluoro-acetyl)-amino]-2-hydroxy-cyclohexyl ⁇ -benzene- carbothioate was dissolved in 81 ml of dichloromethane, 1.67 g (1.62 ml) of hydrazine hydrate was added and the resulting solution was stirred at rt for 3.5 h.
  • Step B 14-0- ⁇ ⁇ ( 1 i?.2 ?.4/?)-r(2.2,2-Trifluoro-acetvn-amino1-2-hvdroxy-cvclohexyl- sulfanyl]-acetyl ⁇ -mutilin
  • the ⁇ NMR pattern confirms the structure of 14-O- ⁇ [(li?,2i?,4/?)-4-[(2,2,2-Trifluoro- acetyl)-amino]-2-hydroxy-cyclohexyl-sulfanyl]-acetyl ⁇ -mutilin.
  • the NMR pattern for 14-O- ⁇ [( 17?,2 ?,4i?)-4-[(2,2,2-Trifluoro-acetyl)-amino]-2-hydroxy-cyclohexyl-sulfanyl]-acetyl ⁇ - mutilin is described in example 6, procedure 1.
  • the mixture obtained was heated to 88 to 92 °C, stirred for 40 min, allowed to cool at a steady rate over 3 h to 40 to 45 °C and stirred for a further 2 h.
  • the mixture obtained was filtered, washed with 44.2 ml of «-butanol followed by 44.2 ml of MTBE and dried in vacuo at ⁇ 40°C.
  • the 1H NMR pattern confirms the structure of 14-O- ⁇ [(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin.
  • the NMR pattern for 14-O- ⁇ [(lif,2 ?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl ⁇ -mutilin is described in example 4.
  • the organic phase obtained was washed with 40 ml of aqueous 1 M NaOH solution, 2 x 40 ml of 0.1 M phosphoric acid followed by 40 ml of 10 % NaHC0 3 solution and 40 ml of H 2 0.
  • the organic liquors obtained were concentrated and dried in vacuo at ⁇ 40 °C.
  • the organic phase obtained was concentrated to approximately 5 volumes, 59 ml of CH2CI2 was added, and the mixture obtained was concentrated again to approximately 5 volumes.
  • 59 ml of dichloromethane was again added and the mixture obtained was concentrated to 2 volumes.
  • 1 19 ml of di-isopropyl ether was added dropwise with stirring over a period of 1 h.
  • a thick oily precipitate was obtained which became white crystals after approximately 1 h.
  • the mixture obtained was stirred at 15 to 25 °C for 2 h, filtered, the precipitate obtained was washed with 24 ml of di-isopropyl ether and pulled dry on the filter.
  • the 1H NMR pattern confirms the structure of 14-O- ⁇ [(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl ⁇ -mutilin.
  • the NMR pattern for 14-O- ⁇ [(l ⁇ ,2 ⁇ ,4i?)-4-amino-2- hydroxy-cyclohexylsulfanylj-acetyl ⁇ -mutilin is described in example 4.
  • the 1H NMR pattern confirms the structure of 14-O- ⁇ [(l ?,2i?,4J?)-4-Amino-2-hydroxy- cyclohexyl-sulfanyl] -acetyl ⁇ -mutilin acetate.
  • the NMR pattern for 14-0- ⁇ [(lR,2R,4R)-4- Amino-2-hydroxy-cyclohexyl-sulfanyl] -acetyl ⁇ -mutilin acetate is described in example 12.
  • REACTION SCHME 3 R represents an amino protecting group as defined above.
  • the ⁇ NMR pattern confirms the structure of 14-0- ⁇ [(1 ⁇ ,2 ⁇ ,4 ⁇ )-4-[(2,2,2- Trifluoroacetyl)-amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl ⁇ -mutilin.
  • the NMR pattern for 14-0- ⁇ [(li?,2i-,4 ⁇ )-4-[(2,2,2-Trifluoroacetyl)-amino-2-hydroxy-cyclohexyl-sulfanyl]- acetyl ⁇ -mutilin is described in example 6.
  • REACTION SCHME 4 R represents an amino protecting group and and Ri represents a sulfur protecting group and are as defined above.
  • Step A tert-Butyl cyclohex-3-enyl-l( f)-carbamate
  • Step B was repeated until a required optical rotation ( 20 [ ⁇ ] ⁇ > 40°) was achieved.
  • CycIohex-3-ene-l(/?)-carboxylic acid may be obtained in analogy to the method disclosed in Schwartz, H. M.; et al. JACS 1978, 100, 5199-5203.
  • Step C ⁇ (lR,2R,4 ?)-4-[(iert-Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl ⁇ -benzene- carbothioate
  • R represents an amino protecting group and R ⁇ represents a sulfur protecting group and are defined as above.
  • Step A N-(Cyclohex-3-en-l(/?)-yl)-2,2.,2-trifluoro-acetamide
  • the mixture obtained was cooled to approximately 70 °C and 226 g of trifluoroacetic acid in 34 ml of chlorobenzene was added dropwise maintaining the temperature at 70 to 80 °C, followed by 1.57 g of CuCl and a 25 ml chlorobenzene line rinse.
  • the mixture obtained was stirred at 90 to 95 °C for 2 h and the reaction was followed by TLC until completion.
  • the mixture obtained was cooled to 15 to 25 °C and 375 ml of 20% aqueous K 2 C0 3 solution added and the mixture obtained was stirred for 15 min.
  • the layers obtained were separated and to the upper organic layer obtained was added 375 ml of 20% aqueous K 2 C0 3 solution.
  • the mixture obtained was filtered through celite to remove residual solid and the celite was washed with 50 ml of chlorobenzene.
  • the layers obtained were separated.
  • the combined lower aqueous layers obtained were back extracted with 250 ml of chlorobenzene and the combined organic phases obtained were washed with 500 ml of 0.5 M phosphoric acid.
  • the aqueous layer obtained was back extracted with 300 ml of chlorobenzene and the combined organic phases obtained were washed with 500 ml of 5 % aqueous NaCl solution.
  • a strip weight assay was carried out to determine the N-(cyclohex-3-en-l(7?)-yl)-2,2,2- trifluoro-acetamide content for use in epoxidation step B below.
  • the chlorobenzene solution obtained contained 69.52 g of N-(cyclohex-3-en-l(/?)-yl)-2,2,2- trifluoro-acetamide.
  • the mixture obtained was cooled to 0 to -5 °C, stirred for 30 min and the solid precipitate (wiCBA) obtained was filtered off and washed with 2 x 34.8 ml of chlorobenzene.
  • the resultant filtrate was washed with 347.6 ml of 10% sodium thiosulfate solution to remove peroxides, and the resultant aqueous layer was back extracted with 208.6 ml of chlorobenzene.
  • the combined organic layers obtained were washed with 347.6 ml of 5% sodium bicarbonate solution to ensure a pH > 7 of the aqueous phase and the resultant aqueous layer was back extracted with
  • a strip weight assay was carried out to determine the 2,2,2-trifluoro-N-(l ?,3 ?,6S)-(7-oxa- bicyclo[4.1.0]hept-3-yl)-acetamide content.
  • the chlorobenzene solution obtained contained 58.64 g of 2,2,2-trifluoro-N-(li?,3i?,6S)-(7- oxa-bicyclo[4.1.0]hept-3-yl)-acetamide containing approximately 1 1% of anti (trans) epoxide and the organic solution was used for step C below (ring-opening).
  • Step C ⁇ ( 1 jg.2/?.4 -)-4-[(2.2,2-Trifluoro-acetyl)-amino -2-hvdroxy-cyclohexyl ⁇ -benzene- carbothioate
  • the chlorobenzene solution from step B containing 58.64 g of 2,2,2-trifiuoro-N-(l ?,3i?,6S)- (7-oxa-bicyclo[4.1.0]hept-3-yl)-acetamide was concentrated to approximately 5 volumes based upon epoxide.
  • the concentrate obtained was degassed at 15-25°C with argon for 30 min and the temperature was adjusted to 15 to 20 °C.
  • To the mixture obtained 58.1 g of thiobenzoic acid (90 %) was added dropwise ensuring a temperature below 30 °C.
  • Step A fe -Butyl cyclohex-3 -enyl- l(i?)-carbamate and fe -Butyl cyclohex-3 -enyl- HS)- carbamate
  • the mixture obtained was cooled to 80 °C and 186 ml of t-BuOH was added dropwise over 10 min, followed by 1.26 g of CuCl and the mixture obtained was heated to reflux. The reaction was followed by ⁇ NMR, and was shown to be complete after 1 h.
  • the mixture obtained was cooled to 20 to 25 °C and 250 ml of saturated NaHC0 3 solution was added over 5 to 10 min.
  • the mixture obtained was stirred for 30 min, filtered to remove residual solid and the solid was rinsed with 25 ml of toluene.
  • the layers were separated and the aqueous layer was extracted with 2 x 150 ml of toluene.
  • the organic layers were combined, washed with 150 ml of water and concentrated in vacuo.
  • Step B fe -Butyl (li?.3i?.65 ⁇ -(7-oxa-bicvclor4.1.01hept-3-vn-carbamate and tert-Butyl ( ⁇ S3S.6R)-(7-oxa-bic ⁇ c ⁇ o ⁇ 4.1.01hept-3-ylVcarbamate
  • the organic layer obtained was concentrated, 150 ml of toluene was added and the mixture obtained was concentrated again. To the concentrate obtained 150 ml of toluene was added, the mixture obtained was concentrated to dryness, toluene was added to approximately 2 volumes and the mixture obtained was kept in a refrigerator before use in the next step.
  • the syn:anti ratio is 100:0 determined by ⁇ NMR.
  • Step C ⁇ ( 1 R2 RAR)-4- (tert-Butoxycarbonyl)-amino] -2-hydroxy-c vclohexyl ⁇ -benzene- carbothioate and ⁇ ( 1 S,2SAS)-4- [(te -Butoxycarbonyl Vaminol-2-hvdroxy-cvclohexyl ⁇ - benzene-carbothioate

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Abstract

Process for the preparation of a Compound of formula I in the form of a single stereoisomer in crystalline form, comprising deprotecting the amine group in a Compound of formula IIa or in a mixture of a compound of formula IIa With a compound of formula IIb and isolating a Compound of formula I from the reaction mixture; Compounds and salts of Compounds of formula I in crystalline form; pharmaceutical compositions comprising such salts; processes for the preparation of intermediates and intermediates in a process for the preparation of a Compound of formula I.

Description

Process for the preparation of Pleuromutilins
The present invention relates to crystalline 14-0-{[(4-amino-2-hydroxy-cyclohexyl)- sulfanyl] -acetyl }-mutilin, new processes for its preparation and crystalline salts thereof.
Pleuromutilin, a compound of formula
Pleuromutilin
Figure imgf000003_0001
is a naturally occurring antibiotic, e.g. produced by the basidiomycetes Pleurotus mutilus and P. passeckerianus, see e.g. The Merck Index, 12th edition, item 7694.
A number of further pleuromutilins having the principle ring structure of pleuromutilin and being substituted at the primary hydroxy group have been developed, e.g. as antimicrobials. Due to their pronounced antimicrobial activity, a group of pleuromutilin derivatives, amino- hydroxy-substituted cyclohexylsulfanylacetylmutilins, as disclosed in WO 2008/113089, have been found to be of particular interest. As described in WO2008/11089 14-0-{[(4- Amino-2-hydroxy-cyclohexyl)-sulfanyl] -acetyl }-mutilins are particularly useful compounds because they demonstrate activity against Gram-positive and Gram-negative pathogens e.g. associated with respiratory tract and skin and skin structure infections. For the production of substantially pure isomers/diastereomers of this group of compounds, there is a need for a production process which is convenient for use on an industrial scale and which also avoids the use of costly starting materials, environmentally hazardous reagents and solvents or time consuming and laborious purification steps. The production process described in WO 2008/113089 involves chromatographic purification of the compounds prepared according to individual synthesis steps and the final diastereomers are separated by chiral HPLC chromatography which cannot be used on industrial scale. Surprisingly, crystalline intermediates have been found which on the one hand have unexpected chemical purification potential which is important for the production processes for pure amino-hydroxy-substituted cyclohexylsulfanylacetylmutilins avoiding
chromatographic purification and separation steps.
It has to be pointed out that 14-0-{[(4-amino-2-hydroxy-cyclohexyl)-sulfanyl]-acetyl}- mutilins are potential new drug substances for the human market with regulatory
requirements defined in the corresponding ICH guidelines (International Conference on Harmonization of Technical Requirements for Registration of Pharmaceuticals for Human Use). The ICH guideline on impurities in new drug substances (Q3 A(R2)) includes the following thresholds:
Figure imgf000004_0001
As can be seen from the ICH thresholds above it is desirable to have all individual unknown impurities below 0.10% area and the structure elucidated impurities below 0.15%, respectively. Processes provided according to the present invention enable to produce APIs (Active Pharmaceutical Ingredients) within the desired specifications and fulfilling ICH requirements.
On the other hand, even more surprisingly, the crystalline intermediates yields to significant chiral enrichment which has a huge benefit in the production of the pure stereoisomers starting from cheaper racemic materials or less chirally pure starting materials. The described processes do not involve any chromatographic purification neither normal nor chiral phase in contrast to the synthetic procedures described in WO2008/113089 wherein is disclosed e.g. in Example 1, Step B that 14-0-{[(4-amino-2-hydroxy-cyclohexyl)-sulfanyl]- acetyl}-mutilins was isolated in the form of diastereomeric mixtures as colorless amorphous foams after normal phase chromatography. The chiral pure diastereomers are described to have been received in WO2008/113089, e.g. in Example 1 A after subjecting the mixture to chiral chromatography whereafter the separated pure diastereomers were isolated in the form of colorless amorphous foams.
Chiral chromatography, however is not a technology which can be applied on industrial large scale, and moreover no crystalline salts of 14-0-{[(4-amino-2-hydroxy-cyclohexyl)- sulfanyl]-acetyl}-mutilins were obtained according to WO2008/113089. In contrast to that, according to the present invention crystalline pharmaceutical acceptable salts of 14-0-{[(4-amino-2-hydroxy-cyclohexyl)-sulfanyl]-acetyl}-mutilins having surprising and superior properties over the amorphic prior art salts disclosed in
WO2008/113089 have been found; e.g. surprisingly the chemical stability of the crystalline salts of the present invention is improved over the amorphic salt forms; and also and in addition the crystalline salts of the present invention show a surprising low hygroscopicity.
Processes for the preparation of such crystalline salts wherein the salts may be obtained in a single stereoisomeric form from 14-0-{[(4-amino-2-hydroxy-cyclohexyl)-sulfanyl]-acetyl}- mutilins and processes for the preparation of stereoisomerically pure 14-0-{[(4-amino-2- hydroxy-cyclohexyl)-sulfanyl]-acetyl}-mutilins in crystalline form as a basis for the crystalline salts have also been found.
In one aspect the present invention provides a process for the preparation of a compound of formula I
Figure imgf000005_0001
in the form of a single stereoisomer in crystalline form, comprising
deprotecting the amine group
either in a compound of formula Ila
Figure imgf000005_0002
in a mixture of a compound of formula Ila with a compound of formula lib
Figure imgf000006_0001
wherein R is an amine protecting group, and isolating a compound of formula I obtained in the form of a single diastereomer in crystalline form either directly from the reaction mixture or via recrystallization in organic solvent.
In another aspect the present invention provides a compound of formula I as defined above in the form of a single stereoisomer in crystalline form.
Compounds of formula Ila are new and also form part of the present invention.
In another aspect the present invention provides a compound of formula Ha.
In a compound of formula I, or Ha, respectively, the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the sulfanyl-acetyl-mutilin group are attached are all in the R configuration and thus a compound of formula I, or Ila represents an optionally amine protected 14-0-{[(l ?,2i?,4 ?)-4-amino-2-hydroxy-cyclohexylsulfanyl]- acetyl}-mutilin. In contrast to that, in a compound of formula lb
Figure imgf000006_0002
or lib the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the sulfanyl-acetyl-mutilin group are attached are all in the S configuration and thus a compound of formula lib represents an optionally amino protected 14-0-{[(lS,2S,4S)-4-Amino-2-hydroxy- cyclohexylsulfanyl] -acetyl } -mutilin. An amine protecting group includes protecting groups known to a skilled person and which are removable under acidic, basic, hydrogenating, oxidative or reductive methods, e.g. by hydrogenolysis, treatment with an acid, a base, a hydride, a sulfide. Appropriate amine protecting groups e.g. are described in T. W. Greene, P. G. M. Wuts, Protective Groups in Organic Synthesis, Wiley-Interscience, 4th edition, 2007, particularly p. 696-868.
Amine protecting groups which may be conveniently used in a process according to the present invention include for example
- benzyloxycarbonyl (Cbz), removable e.g. by hydrogenolysis,
- 7-methoxybenzyl carbonyl (Moz or MeOZ), removable e.g. by hydrogenolysis,
- tert-butyloxycarbonyl (BOC), removable e.g. by treatment with a strong acid, such as HC1, H3P04 or CF3COOH,
- trifluoroacetyl, removable e.g. by treatment with a base, such as NaOH, K2C03, Cs2C03,
- 9-fluorenylmethyloxycarbonyl (FMOC), removable e.g. by treatment with a base, such as piperidine,
- benzyl (Bn), removable e.g. by hydrogenolysis;
- ?-methoxybenzyl (PMB), removable e.g. by hydrogenolysis;
- 3,4-dimethoxybenzyl (DMPM), removable e.g. by hydrogenolysis;
- >-methoxyphenyl (PMP), removable e.g. by treatment with ammonium cerium(IV) nitrate (CAN),
- tosyl (Tos), removable e.g. by treatment with concentrated acid, such as HBr, H2S04, or by treatment with strong reducing agents, such as sodium in liquid ammonia, sodium naphthalene,
- groups which form with the amine sulfonamides other than Tos-amides, e.g. including 2- nitrobenzenesulfonamide (nosyl) or o-nitrophenylsulfenyl (Nps), removable e.g.by treatment with samarium iodide, tributyltin hydride,
- benzylidene, removable e.g. by treatment with trifluoromethanesulfonic acid,
trifluoroacetic acid, dimethyl sulfide;
- triphenylmethyl (trityl, Tr), dimethoxytrityl (DMT), e.g. removable by treatment with an acid, such as trifluoroacetic acid;
preferably trifluoroacetyl or tert-butyloxycarbonyl (BOC). In case of trifluoroacetyl a base e.g. an inorganic base, such as NaOH, KOH, Cs2C03 and 2C03 or an organic base such as ethanolamine may be used to effect deprotection of a compound of formula Ila and lib to obtain a compound of formula I in the form of a single stereoisomer. In a preferred embodiment an inorganic base, such as NaOH and 2C03 is used.
In case of tert-butyloxycarbonyl (BOC) an acid, e.g. an inorganic, such as a mineral acid, or an organic acid may be used to effect deprotection of a compound of formula Ila and lib to obtain a compound of formula I in the form of a single stereoisomer. In a preferred embodiment an organic acid, such as trifluoroacetic acid (TFA), or a mineral acid, such as ortho phosphoric acid is used.
Alternatively the nitrogen atom to which R is attached form a heterocyclic ring, e.g. the nitrogen atom attached to the cyclohexyl group is part of a phthalimido ring; removable, e.g. by treatment with hydrazine. In this case the hydrogen at the nitrogen is not present (see example 17).
The deprotection of compound of formula Ila leads to the compound of formula I in the form of a single product. In case of deprotection of a mixture of a compound of formula Ila with a compound of formula lib the obtained products of formulae la and lb are subjected to crystallization/recrystallization and a compound of formula I is obtained out of the mixture.
It has been found that during the amine deprotection reaction the stereochemistry of carbon atoms of the cyclohexyl moiety wherein the thio, hydroxy and amino group, respectively, are attached is retained as in the amine protected compounds of formula Ila and lib used as a starting material.
Surprisingly it has been found that a compound of formula I may be crystallized after isolation, or even directly in the reaction mixture obtained after deprotection of the amine group. For example a solution of a compound of formula I in a single stereoisomeric form obtained in organic solvent, preferably polar organic solvent, such as CH2CI2, is treated with an antisolvent, such as an ether, e.g. diisopropylether (DIPE) or tert-butyl methyl ether (MTBE), preferably DIPE; or a solution of a compound of formula I in a single
stereoisomeric form obtained in organic solvent, preferably polar organic solvent, such as CH2Cl2, is treated after concentration with an organic solvent, preferably an alcohol, such as n-butanol; or an isolated crude material of a compound of formula I in a single
stereoisomeric form, is taken up in an organic solvent, such as an ether, e.g. tetrahydrofuran (THF), and optionally treated with an antisolvent, such as an ether, e.g. DIPE or MTBE. A compound of formula I in a single stereoisomeric form, may crystallize and may be isolated in crystalline form.
Crystallization simplifies isolation and handling of the isolated materials and provides excellent opportunities for further purification of the product.
The crystalline compounds obtained according to the present invention may be subjected to further purification, such as recrystallization e.g. out of an organic solvent, preferably an alcohol, such as n-butanol.
(Re)crystallization may be repeated if desired and may result in high recovery yields and excellent purification.
In the following TABLE 1 the surprising high purification potential of the crystalline compound of formula I is indicated.
TABLE 1
HPLC purity (% area) of
Reaction Stage Impurity RRT 1.32 (% area) compound of formula I
Reaction completion
after deprotection of 87.3 4.2
lib
After DCM/DIPE
95.0 2.2
crystallization
After 1st H-BuOH
99.0 0.6
crystallization HPLC purity (% area) of
Reaction Stage Impurity RRT 1.32 (% area) compound of formula I
After 2ND H-BUOH
99.7 <0.15
crystallization 3
RRT = relative retention time in the HPLC with respect to I
As clearly can be seen from TABLE 1 above, the purity of a compound of formula I after deprotection of a compound of formula Ila was increased from 87.3% to 95.0% after crystallization and isolation out of DCM (CH2C12) / DIPE. The purity is further increased by w-butanol (re-)crystallizations to a final purity of the isolated compound of formula I of even 99.7%.
TABLE 2 below shows the depletion of selected impurities and overall purification of a recovered compound of formula I from process mother liquors after subjecting to a n-butanol recrystallization:
TABLE 2
Figure imgf000010_0001
Crystallization may be enhanced and accelerated by the use of seed crystals. Seed crystals may be obtained by the processes as exemplified herein. The crystallization and
recrystallization process of a compound of formula I delivers the desired purity and is highly useful on an industrial scale. The cumbersome and expensive purification by
chromatography is circumvented and makes the process industrially applicable.
Even more surprisingly the crystallization of compound I leads to clear diastereomeric enhancement in favor of a compound of formula I when starting from a mixture of a compound of formula I with a compound of formula lb. After deprotection of a mixture of a compound of formula Ila with a compound of formula lib and crystallization of the resulting solid in organic solvents or solvent mixtures such as DCM/DIPE results in a significant diastereomenc enhancement. The diastereomeric enhancement is even more pronounced if a recrystallization out of an organic solvent, preferable an alcohol such as n-butanol is performed.
In the following TABLE 3 the chiral enrichment of a compound of formula I in crystalline form is indicated.
TABLE 3
Figure imgf000011_0001
From TABLE 3 it is evident that starting from the diastereomeric mixture of compounds of formulae Ila and lib in the deprotection step and isolating the resulting products from the reaction mixture via DCM/DIPE crystallization yields to a surprising chiral enhancement of 59 : 41 in favor of a compound of formula I. Subjecting the resulting enriched product mixture of a compound of formula I and a compound of formula lb to a n-butanol recrystallization results in a massive and even more surprising enrichment in favor of a compound of formula I in the isolated product (93 : 7). In contrast to the isolated product of the enriched compound of formula I the w-butanol mother liquor contains almost exclusively a compound of formula lb (84%).
Optionally recrystallization can be repeated until a desired optical purity is achieved. The surprising properties of a compound of formula I in crystalline form which are shown in TABLEs 1 , 2 and 3 are extremely useful in the preparation of pharmaceutical compounds.
The present invention provides a compound of formula I in single stereoisomeric form in crystalline form.
Surprisingly, two different crystalline forms of a compound of formula I have been isolated and characterized by X-ray powder diffraction.
In another aspect the present invention provides 14-O-{[(li?,2^,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl }-mutilin in crystalline Form 1, e.g. which crystalline Form 1 is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ± 0.2, inter alia):
10.6, 11.1, 12.0, 14.3, 15.1, 16.1, 21.1; such as:
10.6, 11.1, 12.0, 14.3, 15.1, 16.1, 18.2, 19.2, 20.7, 21.1, 21.3, 21.8, 22.6, 23.5, 24.7, 28.2, 30.2.
In another aspect the present invention provides 14-O-{[(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl}-mutilin in crystalline Form 2, obtained as an 1:1 n-butanol solvate, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ± 0.2, inter alia):
9.8, 11.1, 13.1, 14.1, 17.6, 19.7, 22.2; such as
9.6, 9.8, 11.1, 13.1, 14.1, 16.0, 17.6, 19.7, 22.2; 22.7, 23.0.
The «-butanol content of 14-O-{[(li?,2 ?,4^)-4-amino-2-hydroxy-cyclohexylsulfanyl]- acetyl}-mutilin in crystalline Form 2 is between 10 and 18 % w/w, typically between 11 and 14% w/w.
A compound of formula I is preferably isolated in the form of a salt, such as a
pharmaceutically acceptable salt. Such salts are preferably ammonium salts, namely acid addition salts of the amino group attached to the cyclohexyl ring, and include acetates, lactates, e.g. L-lactates, or maleates, e.g. hydrogenmaleates. In another aspect the present invention provides a compound of formula I in the form of a single stereoisomer and in the form of a salt, e.g. crystalline salt, wherein a compound of formula I is in the form of a single stereoisomer; the salt preferably is an acetate, lactate, e.g. L-lactate or maleate, e.g. hydrogenmaleate.
Crystalline compounds obtained according to the present invention in a single steroisomeric form of formula I, e.g. in the form of a salt, are useful in a pharmaceutical composition.
In a further aspect the present invention provides a pharmaceutical composition comprising crystalline 14-0- { [(( 1 R,2R,4R)-4-arnino-2-hydroxy-cyclohexyl)sulfanyl] acetyl } mutilin, or comprising an, optionally crystalline, acetate, lactate, or hydrogenmaleate of 14-0- {[((lR,2R,4R)-4-amino-2-hydroxy-cyclohexyl)sulfanyl] acetyl} mutilin as an active ingredient in combination with pharmaceutically acceptable carrier or diluent.
Compounds of formula I in free form and in single stereoisomeric form thus obtained may be converted into a salt by addition of an acid to the free base of a compound of formula I. E.g. a compound of formula I may be dissolved or suspended, or is obtained in dissolved or suspended form, in organic solvent, preferably a solvent or solvent mixture, such as an alcohol, e.g. methanol, ethanol; a halogenated hydrocarbon, e.g. dichloromethane; an ether, e.g. tetrahydrofuran, an acetate, such as methyl acetate, ethyl acetate, propyl acetate, isopropyl acetate; a solvent mixture of alcohol with acetate, such as methanol/isopropyl acetate, a solvent mixture of halogenated hydrocarbon with acetate, such as
dichloromethane/isopropylacetate, a solvent mixture of ether with acetate, such as tetrahydrofuran/ isopropyl acetate, and to the mixture obtained an acid, e.g. an organic acid or'an inorganic (mineral) acid, e.g. acetic acid, lactic acid, e.g. L-lactic acid, maleic acid, is added. A compound of formula I, in the form of a salt, e.g. crystalline salt, may be obtained and may be isolated.
It has been found that in the salt formation step the stereochemistry of the carbon atoms of the cyclohexyl ring to which a thio, hydroxy or an amino group is attached, is retained and remains the same as in a compound of formula I in free form. Isolation of pharmaceutically active compounds as described in WO2008/113089, example I and la, respectively, is advantageous; but isolation according to the present invention in crystalline salt form, such as a compound of formula I in crystalline salt form is still much more advantageous. E.g. an improved purity and a surprisingly improved stability of the crystalline salt according to the present invention is highly important and useful for the preparation of pharmaceutical compositions, intended for veterinary and human use. The crystalline salts of a compound of formula I demonstrate improved stability over the corresponding amorphous forms and are isolated with chemical and chiral purity of > 90%, e.g. even > 95%.
In the following TABLE 4 comparative stability data of the corresponding crystalline and amorphous salts of compound I are shown.
TABLE 4
Figure imgf000014_0001
was analyzed
The solubility of pharmaceutical active compounds is an important property for the in vivo availability e.g. oral bioavailability. For the intravenous application the solubility of the selected form e.g. salt is also very crucial and it is desired of having formulations without sophisticated technologies or exipients.
The solubility of the crystalline acetate, lactate and (hydrogen)maleate salts of the present invention in water and aqueous based vehicles such as 0.9% NaCl solution or in biorelevant media such as FaSSIF (Fasted State Simulated Intestinal Fluid) and FeSSIF (Fed State Simulated Intestinal Fluid) is surprisingly high, which make the crystalline salts of the present invention even more pharmaceutically viable. The antimicrobial, e.g. antibacterial activity of 14-0-{[(4-amino-2-hydroxy-cyclohexyl)- sulfanyl]-acetyl}-mutilins was outlined in WO2008/113089. For example, the compounds of the present invention e.g. compound of formula I show antimicrobial, e.g. antibacterial, activity against Gram-positive bacteria, such as coagulase positive Staphylococci, e.g.
Staphylococcus aureus and Streptococci, e.g. Streptococcus pneumoniae, e.g. exhibiting MICs < 0.4 μ^πιΐ against Staphylococcus aureus ATCC49951 and Streptococcus pneumoniae ATCC49619. The minimum inhibitory concentration (MIC) was determined in accordance with CLSI recommendations.
In a further aspect the present invention provides crystalline 14-O-{[(l ?,2i?,4/?)-4-amino-2- hydroxy-cyclohexylsulfanyl] -acetyl }-mutilin in the form of an acetate in crystalline Form A, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ± 0.2, inter alia):
7.0, 7.7, 11.6, 12.1, 12.6, 13.5, 13.7, 15.4, 15.7, 16.9, 17.3, 19.0, 19.9, 21.1, 23.4, 24.2, 24.4; such as
7.0, 7.7, 11.6, 12.1, 12.6, 13.5, 13.7, 14.1, 15.4, 15.7, 16.5, 16.9, 17.3, 19.0, 19.6, 19.9, 20.1, 21.1, 22.2, 22.5, 23.4, 24.2, 24.4, 26.7, 29.1, 29.6, 31.0.
In a further aspect the present invention provides crystalline 14-O-{[(li?,2i?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin in the form of an acetate in crystalline Form B, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ± 0.2, inter alia):
10.3, 10.7, 12.7, 14.3, 15.5, 16.0,.17.2, 19.5, 20.6, 22.9; such as
9.0, 10.3, 10.7, 12.7, 14.3, 15.5, 16.0, 17.2, 19.5, 20.6, 21.7, 22.3, 22.7, 22.9, 24.4.
In a further aspect the present invention provides crystalline 14-0-{[(li?,2 ?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl] -acetyl }-mutilin in the form of an L-lactate in crystalline Form 1, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2-theta at (degrees, ± 0.2, inter alia):
7.0, 11.6, 12.0, 12.5, 13.4, 13.6, 13.9, 15.3, 16.8, 18.8, 19.5, 19.8, 20.9, 23.3, 23.9, 24.2; such as 7.0, 7.6, 11.6, 12.0, 12.5, 13.4, 13.6, 13.9, 15.3, 15.5, 16.8, 17.2, 18.8, 19.5, 19.8, 20.0, 20.9, 22.0, 22.4, 22.7, 23.3, 23.9, 24.2; 25.3, 28.9, 29.4, 30.8
In a further aspect the present invention provides crystalline 14-O-{[(li-,27?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin in the form of a hydrogenmaleate in crystalline Form 1, e.g. which is characterized by an X-ray powder diffraction pattern with peaks 2- theta at (degrees, ± 0.2, inter alia):
7.0, 11.3, 11.7, 12.5, 13.5, 13.8, 15.3, 16.7, 18.3, 19.4, 19.7, 21.1, 22.2, 23.8, 23.9; such as 7.0, 11.3, 11.7, 12.5, 13.3, 13.5, 13.8, 14.1, 15.3, 16.7, 17.2, 18.0, 18.3, 19.4, 19.7, 20.4, 21.1, 21.9, 22.2, 22.8, 23.8, 23.9, 24.9, 27.1, 27.8, 28.7, 29.3, 30.6, 30.8,
A compound of formula I in the form of a (crystalline) free base exhibits the same order of pharmaceutical activity, such as antimicrobial activity, than a compound of the present invention in the form of a (crystalline) salt.
A compound of formula Ila in the form of a single stereoisomer or the mixture of a compound of formula Ila with a compound of formula lib may be prepared as appropriate, e.g. according, e.g. analogously to a method as conventional. Preferably a compound of formula Ila in the form of a single stereoisomer or the mixture of compound of formula Ila with a compound of formula lib are prepared by coupling an amino-hydroxy-mercapto- cyclohexane compound of formula Ilia, or a mixture of a compound of formula Ilia with a compound of formula Illb, wherein the amino group is protected with an amino protecting group with an activated 14-O-acetyl-mutilin.
In a further aspect the present invention provides a process according to the present invention, wherein a compound of formula Ila, or a mixture of a compound of formula Ila with a compound of formula lib is obtained by coupling
either a compound of formula Ilia
Figure imgf000016_0001
, or a mixture of a compound of formula Ilia with a compound of formula Illb
OH
Figure imgf000017_0001
H respectively
wherein R is as defined above,
with an activated 14-O-AKT-acetyl-mutilin of formula
Figure imgf000017_0002
, wherein AKT is an activating group, optionally mesyl, besyl, tosyl, or -O-AKT is halogen; optionally 14-O-AKT-acetyl- mutilin is a compound of formula
Figure imgf000017_0003
and isolating either a compound of formula Ila, or mixture of a compound of formula Ila with a compound of formula lib obtained from the reaction mixture.
Compounds of formula Ilia wherein R is as defined above are new and also form part of the present invention.
In another aspect the present invention provides a compound of formula Ilia in a single stereoisomeric form. In a compound of formula Ilia the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the R configuration and thus a compound of formula Ilia represents an optionally amino protected (li?,2i?,4/?)-4-amino-2- hydroxy-l-mercapto-cyclohexane; and in a compound of formula Mb, respectively, the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the S configuration and thus a compound of formula Illb represents an optionally amino protected (lS,25,45)-4-amino-2-hydroxy-l-rnercapto- cyclohexane.
The coupling reaction of a compound of formula Ilia or the mixture of a compound of formula Ilia with a compound of formula Illb, respectively, wherein R is as defined above with an activated 14-O-AKT-acetyl-mutilin, wherein AKT is as defined above, to obtain a compound of formula Ila or a mixture of Ila and lib, wherein R is as defined above may be performed as appropriate, e.g. according, e.g. analogously to a method as conventional, such as under standard conditions known for those reactions; e.g. in the presence of a base, e.g. a strong inorganic base, like a hydroxide such as NaOH, e.g. in a two phase system, and, if the reaction is performed in a two phase system preferably in the presence of a catalyst, such as a phase transfer catalyst, e. g. benzyl-tri-butylammonium chloride. The coupling reaction may be also performed in a single solvent system, e.g. in organic solvent such as a halogenated hydrocarbon, e.g. chlorobenzene, dichloromethane, an aromatic solvent such as toluene, a nitrile such as acetonitrile or an ether, e.g. tert-butyl-methylether, tetrahydrofuran, in the presence of base, preferably an organic base, such as DBU.
Preferably the coupling reaction is performed in organic solvent, e.g. an apolar solvent, such as an ether, e.g. tert-butyl methyl ether (MTBE) or polar solvent, such as a halogenated hydrocarbon, e.g. dichloromethane; preferably in the presence of an aqueous base solution, such as aqueous NaOH; or in the presence of base in the organic solvent, such as DBU, DBN, preferably in the presence of a phase transfer catalyst in case of using an aqueous base solution, such as benzyl-tri-butylammonium chloride.
It has been found that during the coupling reaction the stereochemistry of the carbon atoms of the cyclohexyl moiety to which the thio, hydroxy and amino group are attached is retained and remains the same as in a compound of formula Ilia and a compound of formula Mb, respectively, used as a starting material.
A compound of formula Ilia in the form of a single stereoisomer or the mixture of a compound of formula Ilia with a compound of formula Hlb, respectively, may be prepared as appropriate, e.g. according, e.g. analogously to a method as conventional. Preferably a compound of formula Ilia or the mixture of compound of formula Ilia with a compound of formula Mb, respectively, are prepared by deprotecting the thiol function in an amino- hydroxy-mercapto cyclohexane, wherein the amino group and the thiol group both are protected.
In another aspect the present invention provides a process according to the present invention, wherein a compound of formula Ma, or a mixture of a compound of formula Ma with a compound of formula Mb is obtained by deprotecting the thiol function either in a compound of formula IVa
Figure imgf000019_0001
in a mixture of compound IVa with a compound of formula IVb
Figure imgf000019_0002
, respectively, wherein R is as defined above and Ri is a thiol protecting group, and
isolating either a compound of formula Ma, or a mixture of a compound of formula Ma with a compound of formula Mb, respectively, obtained from the reaction mixture.
A thiol protecting group, e.g. in the meaning of Ri in a compound of formulae IVa and IVb according to the present invention, includes e.g.
-
Figure imgf000019_0003
wherein alkyl optionally is further substituted, e.g. further substiuted by (C6- i2)aryl such as phenyl, such as a trityl; e.g. removable by strong acid or AgN03 treatment, — (Ci-<5)alkylcarbonyl, e.g. acetyl, e.g. removable by base, such as sodium methoxide, treatment,
- (C6-i2)arylcarbonyl, such as a benzoyl, e.g. removable by treatment with reduction agent, such as DIBAL, or by treatment with a base, such as hydrazine,
preferably -C(=0)-(C6-i2)aryl; more preferably benzoyl.
Appropriate sulfur protecting groups e.g. are described in T. W. Greene, P. G. M. Wuts, Protective Groups in Organic Synthesis, Wiley-Interscience, 4th Edition, 2007, particularly p. 647-695.
In a compound of formula IVa the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the R configuration and thus a compound of formula IVa represents an amine and thio protected (l ?,27?,4i?)-4-amino-2- hydroxy-l-mercapto-cyclohexane; and in a compound of formula IVb the carbon atoms of the cyclohexyl ring to which the hydroxy group, the amine group and the thio group are attached are all in the S configuration and thus a compound of formula IVb represents an amino and thio protected (lS,2S,4<S)-4-amino-2-hychoxy-l-mercapto-cyclohexane.
It has been found that during the thiol deprotection reaction the stereochemistry of the carbon atoms of the cyclohexyl moiety to which the thio, hydroxy and amino group are attached is retained and remains the same as in a compound of formula IVa and in a compound of formula IVb, respectively, used as a starting materials.
Deprotection of the thiol group is carried out as appropriate, e.g. by use of a cleaving agent, e.g. hydrazine hydrate. The deprotection reaction is carried out in an organic solvent, such as a halogenated hydrocarbon, e.g. chlorobenzene, dichloromethane, an aromatic solvent such as toluene, a nitrile such as acetonitrile or an ether, e.g. tert-butyl-methylether,
tetrahydrofuran. In order to minimize disulfide formation, deprotection is optionally performed in the presence of an antioxidant or reducing agent, e.g. dithiothreitol (DTT). A compound of formula IVa or a mixture of compound of formula IVa with a compound of formula IVb, respectively may be obtained as appropriate, e.g. analogously to a method as conventional or as described herein, e.g. in the example part.
In another aspect the present invention provides
- a process for the production of a compound of formula I in the form of a single
stereoisomer, comprising using a compound of formula lla in the form of a single stereoisomer, or a mixture of compound of formula lla with a compound of formula lib, respectively, and/or comprising using a compound of formula Ilia in the form of a single stereoisomer, or a mixture of a compound of formula Ilia with a compound of formula Illb, respectively, and/or using a compound of formula IVa in the form of a single stereoisomer, or a mixture of a compound of formula IVa with a compound of formula IVb, respectively, as an intermediate, and
- a compound of formula lla in the form of a single stereoisomer, and/or a compound of formula Ilia in the form of a single stereoisomer, and/or a compound of formula IVa in the form of a single stereoisomer for use as an intermediate in a process for the production of a compound of formula I in the form of a single stereoisomer.
In a further aspect the present invention provides a process for the production of a compound of formula I in the form of a single stereoisomer, comprising coupling a compound of formula Ilia in the form of a single stereoisomer, or a mixture of a compound of formula Ilia with a compound of formula Illb, respectively, wherein R is as defined above, with an activated 14-O-AKT-acetyl-mutilin, wherein AKT is an activating group, such as a mesyl, besyl or tosyl group, or -O-AKT is halogen, preferably AKT is a tosyl group,
e.g. a compound of formula Tos-PLEU, to obtain a compound of formula lla or a mixture of a compound of formula lla with a compound of formula lib, respectively, wherein R is as defined above,
optionally isolating a compound of formula Ha in the form of a single stereoisomer, or a mixture of a compound of formula lla with a compound of formula lib, respectively, wherein R is as defined above, obtained from the reaction mixture, deprotecting the amine function in a compound of formula Ila in the form of a single stereoisomer, a mixture of a compound of formula Ila with a compound of formula lib, respectively, wherein R is as defined above, obtained, and
isolating a compound of formula I in the form of a single stereoisomer, optionally in the form of a salt; from the reaction mixture optionally via recrystallization, and, if desired, converting a compound of formula I in the form of a single stereoisomer obtained in free form into a compound of formula I in salt form in the form of a single stereoisomer, or vice versa;
wherein optionally a compound of formula Ilia in the form of a single stereoisomer or a mixture of a compound of formula Ilia with a compound of formula Illb, respectively, wherein R is as defined above, is obtained by deprotection of the thiol function in a compound of formula IVa in the form of a single stereoisomer, or in a mixture of a compound of formula IVa with a compound of formula IVb, wherein R and Ri are as defined above.
As an amine protecting group in a compound of formula Ila, lib, Ilia, Illb, IVa or IVb conventional amino protecting groups may be used, preferably a trifluoroacetyl or tert- butoxycarbonyl group. If appropriate the amine protecting group R in a compound of formula Ila, lib, Ilia, Illb, IVa or IVb may be changed, in a way that the carbon atom of the cyclohexyl ring to which the amine group is attached does not change its configuration, i.e. does not change stereochemistry, e.g. via deprotection of the amine group, followed by protection with a different amine protecting group.
The processes of the present invention enables the isolation of compounds of formula I in the form of a single stereoisomer in crystalline form. On the one hand the process controls, when starting from chiral pure starting materials, stereochemistry and yields products in the form of single stereoisomers whereby no sophisticated methods like chromatography, e.g. normal phase or chiral phase, e.g. chiral HPLC, are necessary to separate the mixtures of
diastereomers and regioisomers, e.g. as described in WO 2008/113089 which is a big advantage with respect to an industrially applicable process. The discovery of the crystalline compound of formula I is the key invention and enables perfect control of the chemical purity. In conjunction with the observed desirable yields of the crystalline forms of a compound of formula I, the processes of the present invention are extremely viable for the production of a pharmaceutical where a decent/good yield is needed from an economic point of view and the control of the purity is essential for the final quality of the active
pharmaceutical ingredient (API).
On the other hand the processes according to the present invention control even more surprisingly the chiral purity of a compound of formula I again via surprising properties of crystalline compound I. The surprising properties of crystalline compound I enable to start from much less expensive diastereomeric mixtures. The chiral purity is controlled at the crystalline compound I whereby compound I is isolated in the form of a crystalline solid and the unwanted diastereomer is depleted to the mother liquor.
By no means the existence of a compound of formula I in crystalline form is described in WO 2008/113089. In example 1 Step B of WO 2008/113089 the mixture of 14-0- {[(l ?,2i?,4 ?)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin (compound I of the present invention) and 14-O-{[(liS',25',4S)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}- mutilin are isolated as amorphous foams. Example 1 A in WO 2008/113089 describes the separation of the diastereomers via chiral chromatography and the separated 14-O- {[(li?,2i?,4i?)-4-amino-2-hydroxy-cyclohexylsulfanyl] -acetyl }-mutilin (compound I of the present invention) and H-O-lfiliS^S^^^-amino^-hydroxy-cyclohexylsulfanylj-acetyl}- mutilin (compound lb of the present invention) are again isolated as amorphous foams.
The surprising properties of the crystalline compounds I controlling the chemical and chiral purity of compound I are extremely valuable for the production of a pharmaceutical active compound to be administered to humans or animals.
The present invention further relates to a novel crystalline forms of 14-0-{[(lR,2R,4R)-4- amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}-mutiIin in the form of an acetate, L-lactate or hydrogenmaleate. 14-0- { [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl } - mutilin may be converted to the crystalline salt forms using a crystallization process in organic medium with the salt forming agent. The process for the production of the novel crystalline salts may be enhanced and accelerated by the use of seed crystals. Seed crystals may be obtained by the exemplified processes.
It has been found that the crystalline salts of the present invention retain the stereochemistry of a compound of formula I in free form in the form of a single stereoisomer. The crystalline salts according to the present invention have clear unexpected advantages i.e. enhanced stability over the corresponding amorphous salt forms, as e.g. is evident from TABLE 4.
Moreover and rather surprisingly the hygroscopicity of the crystalline salts of the present invention, preferebly the L-lactate and the acetate salt in crystalline Form B is small between relevant humidity levels, i.e. between 0-80% relative humidity with a water uptake of below 2% making the salts in conjunction with the excellent chemical stability pharmaceutically viable.
The crystalline salts of the present invention are of desired and consistent chemical and chiral purity, have better stability compared to the amorphous lyophilized forms, being advantageous in the storage and for the preparation of pharmaceutical compositions. No crystalline salt form of a compound of formula I has been described before , e.g. in WO 2008/113089.
Overall, the crystalline salt forms of a compound of formula I have excellent purities and the observed stability was not only superior to the amorphous salt forms but have proofen to be absolutely pharmaceutically viable within the range of normal storage conditions.
"In the form of a single stereoisomer" as used herein designates a form wherein the compound shows a diastereomeric or enantiomeric excess of > 90% of the indicated stereochemistry.
Particularly preferred compounds of the present invention include the compounds of Examples 1 to 17, e.g. a compound selected from the group consisting of
tert-Butyl [( 1 i-,3i?,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-carbamate, 14-O- { [( 1 ?,2 ?,4i?)-4-tert-Butoxycarbonylamino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl } - mutilin,
14-O- { [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl } -mutilin, crystalline Form 1,
14-O- { [( 1 i?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl } -mutilin, crystalline Form 2,
2,2,2-Trifluoro-N-[(li?,3i?,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-acetamide,
14-O-{[(l^,2i?,4i?)-4-[(2,2,2-Trifluoro-acetyl)-amino]-2-hydroxy-cyclohexyl-sulfanyl]- acetyl}-mutilin,
14-O- { [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexyl-sulfanyl] -acetyl } -mutilin acetate, crystalline Form A,
14-O- { [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexyl-sulfanyl]-acety 1 } -mutilin acetate, crystalline Form B,
14-O- { [( 1 R,2R ,4 ?)-4-Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl } -mutilin L-lactate, crystalline Form 1,
14-O- { [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl } -mutilin
hydrogenmaleate, in crystalline Form 1 ,
14-O- { [( 1 i?,2if,4i?)-4-ethoxycarbonylamino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl } - mutilin, and
14-O- { [( 1 R,2R,4R)~ 2-hydroxy-4-(phtalimido-N-yl)-cyclohexyl-suIfanyl]-acetyl } -mutilin. Description of the Figures
In Fig. 1 the Powder Diffractogram of 14-O-{[(l/?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl} -mutilin, Form 1 is indicated.
Fig. 2 shows the Powder diffractogram of 14-O-{[(li?,2 ?,4 ?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl} -mutilin, Form 2.
Fig. 3 shows the Powder diffractogram of 14-O-{[(l/?,2/?,4 ?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl}-mutilin in the form of an acetate, Form A.
Fig. 4 shows the Powder diffractogram of 14-O-{[(l/?,2/?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl} -mutilin in the form of an acetate, Form B.
Fig. 5 shows the Powder diffractogram of 14-O-{[(12?,2i?,4 ?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl}-mutilin in the form of an L-lactate, Form 1. Fig. 6 shows the Powder diffractogram of 14-0-{[(l/?,2if,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl]-acetyl}-mutilin in the form of a hydrogenmaleate, Form 1.
The process for the synthesis of a compound of formula I starting from the chiral precursors Ila, Ilia and IVa is summarized in REACTION SCHEME 1 below:
REACTION SCHEME 1
Figure imgf000026_0001
solvent solvent
HN HN^ 14-O-AKT-acetyl-mutilin
Ilia
IVa Ila
Figure imgf000026_0002
In REACTION SCHME 1 R represents an amino protecting group and and Ri represents a sulfur protecting group and are as defined above. The process for the synthesis of a compound of formula I starting from the mixtures of Ila with lib, Ilia with Illb and IVa with IVb is summarized in REACTION SCHEME 2 below:
REACTION SCHEME 2
Figure imgf000027_0001
Acetic acid or L-lactic acid or maleic acid
Salt Formation
solvent
Figure imgf000027_0002
NH2
crystalline acetate or crystalline
L-lactate or crystallne
hydrogenmaleate
In REACTION SCHME 2 R represents an amino protecting group and and Ri represents a sulfur protecting group (R and Ri as defined above). Herein, including the examples and including REACTION SCHEMES 1, 2, 3, 4, 5 and 6 the following abbreviations are used:
°C degrees Celsius
1H NMR proton nuclear magnetic resonance spectroscopy
13C NMR carbon nuclear magnetic resonance spectroscopy
[α]ο specific optical rotation angle at 589nm
BnBu3NCl benzyltributylammonium chloride
BOC teri-butoxycarbonyl
d days
DCM CH2C12
DIBAL diisobutylaluminium hydride
DBN 1 ,5-diazabicyclo[4.3.0]non-5-ene
DBU 1 ,8-diazabicyclo[5.4.0]undec-7-ene
DIPE diisopropylether
DMF N,N-dimethylformamide
DMSO dimethylsulfoxide
DMTF dimethylthioformamide
DPPA diphenylphosphoryl azide
DTT 1,4-dithio-DL-threitol
ESI electrospray ionization
EtOAc ethyl acetate
GF glass fibre
h hours
heptane w-heptane
HPLC High Performance Liquid Chromatography
KF Karl Fischer
M molarity
mCPBA metachloroperoxybenzoic acid
MTBE methyl tert-butyl ether min minutes
MS mass spectrometry
m/z mass/charge ratio
t-BuOH tert-butylalcohol
BU4NCI tetra-tt-butylammonium chloride
PhCOSH thiobenzoic acid
rt room temperature
TLC thin layer chromatography
TEA, Et3N triethylamine
TFA trifluoroacetic acid
THF tetrahydrofuran
Wt weight
w/w weight/weight
XRPD powder X-ray diffraction
A "strip weight assay" as indicated in the examples is defined as follows: The content of an aliquot of a batch or of the whole batch is determined by removing the solvent and determining the content by HPLC or NMR using an internal or external standard and/or subtracting known impurities from the compound. In case of taking an aliquot a back extrapolation to the total mass/volume is performed.
A "line rinse" as indicated in the examples is a system rinse using an appropriate solvent to minimize losses of product and input materials.
Tos-PLEU is a compound of formula
Figure imgf000029_0001
PLEU is a residue of formula
Figure imgf000030_0001
Any compound provided by the present invention is also designated herein as "a
compound(s) of (according to) the present invention" and any process provided by the present invention is designated herein as "a process(es) of (according to) the present invention".
Any compound of the present invention may be obtained as appropriate, e.g. analogously to a method as conventional or as described herein.
In the following examples all temperatures are in degrees Celsius (°C) and are uncorrected. The abbreviations used are indicated above (after reaction SCHEME 2).
Example 1
tert-Butyl [(lR3Ri4R)-3-hydroxy-4-mercapto-cyclohexyl]-carbamate
Figure imgf000031_0001
3.94 Kg of {(li?,2J?,4i?)-4-[(tert-Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl}-benzene- carbothioate and 37 L of CH2C12 were charged to a vessel and the mixture obtained was stirred at 15-25°C. 0.39 Kg of 1,4-dithio-DL-threitol (10% wt) was added to the mixture and rinsed through with 2 L of CH2C12. To the mixture obtained 0.84 Kg of hydrazine monohydrate was added. The mixture obtained was stirred at 18 to 22°C for 3 h and the reaction was followed by HPLC. Upon completion of the reaction, 39 L of 1 M phosphoric acid solution was added and the mixture obtained was stirred for a further 15-30 min. Two phases formed were separated and the organic phase obtained was washed with 39 L of of 1 M phosphoric acid solution followed by 39 L 1% aqueous NaCl solution. The organic layer obtained was concentrated in vacuo at <40°C, to the concentration residue 20 L of CH2C12 was added and the mixture obtained again was concentrated. To the concentration residue obtained a further 8 L of CH2C12 was added and the mixture obtained was concentrated to dryness.
2.89 Kg of tert-Butyl [(l ?,3/?,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-carbamate in the form of a white solid was obtained.
1H NMR (200 MHz, DMSO-de, ppm) δ 6.79 (d, J=7.8Hz, 1H), 4.99 (d, J=5.8Hz, 1H), 3.34 - 3.24 (m, 1H), 3.14 - 3.04 (m, 1H), 2.37 (d, J=3.8 Hz, 1H), 2.00 -1.89 (m, 1H), 1.87 - 1.82 (m, 1H), 1.73 - 1.67 (m, 1H), 1.47 - 1.04 (m, 12H)
Example 2
22-0-TosylpIeuromutilin
Figure imgf000032_0001
22-O-Tosylpleuromutilin is a known compound from literature. However a preparation procedure is outlined below.
A solution of 13.0 kg of pleuromutilin and 6.57 kg of 4-toluenesulfonyl chloride in 42.1 L of CH2CI2 at 10 to 15 °C was treated with 9.1 L of 5.7 M aqueous NaOH over 20 min, maintaining a temperature < 25 °C. The resulting off-white suspension was heated to reflux for 20 h and the reaction was followed until completion determined by HPLC. Upon reaction completion the mixture obtained was cooled to 20 to 30 °C, diluted with 52 L of CH2C12, stirred at 15 to 25 °C for 10 min, and the layers obtained were separated. The organic phase obtained was washed several times with 52 L of water until a pH of the aqueous layer was adjusted to < 9. The organic layer obtained was concentrated to 4 volumes and
azeotropically dried twice with 52 L of CH2C12. To the solution obtained 52 L of heptane were added dropwise and the solution obtained was concentrated at < 40 °C to
approximately 4 volumes. To the concentrate obtained 52 L of heptane was added and the resulting suspension was stirred at 20 to 25 °C for 2 to 2.5 h, filtered, the filter cake obtained was washed with 39 L of heptane and pulled dry on the filter.
The solid was dried under vacuum at < 40 °C for at least 12 h.
16.9 kg of 22-O-tosylpleuromutilin in the form of a white solid was obtained.
1H NMR (200 MHz, DMSO-d6, ppm, inter alia) δ 7.81 (d, 2H), 7.47 (d, 2H), 6.14 - 6.0 (m, 1H), 5.54 (d, J=7.8Hz, 1H), 5.08 - 4.99 (m, 2H), 4.70 (AB, J=16.2Hz, 2H), 3.41 (d, J=5.2Hz, 1H), 2.41(s, 4H), 1.04(s, 3H), 0.81 (d, 3H), 0.51 (d, 3H)
Example 3
14-0-{[(l/?,2R,4R)-4-ter/-Butoxycarbonylamino-2-hydroxy-cyclohexyI-sulfanyl]-acetyl}- mutilin
Figure imgf000033_0001
4.75 Kg of Pleuromutilin tosylate (Tos-PLEU) and 44.4 L of MTBE were charged into a vessel and to the mixture obtained 0.31 Kg of benzyl-tri-«-butylammonium chloride was added and rinsed through with 2.4 L of MTBE. To the mixture obtained 20 L of IM aqueous NaOH solution and 2.84 Kg of tert-Butyl [(lif,3i?,4^)-3-hydroxy-4-mercapto-cyclohexyl]- carbamate were added and the mixture obtained was stirred at 17 to 23 °C for 3 h. Upon completion of the reaction (determined by HPLC) two layers formed were separated and the lower aqueous layer was removed. The organic phase obtained was washed with 19 L of IM aqueous NaOH solution, twice with 20 L of 0.1 M phosphoric acid, 20 L of 10% aqueous NaHC03 solution and twice with 20 L of water. The organic liquors obtained were concentrated, the concentrate obtained was taken up in 7.46 Kg of 2-propanol, the mixture obtained was concentrated again and dried in vacuo at <40°C. 6.66 Kg of 14-O- { [( 1 -¾,2i?,4i?)-4-/ert-Butoxycarbonylamino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl } -mutilin in the form of a white foam was obtained.
Ή NMR (200 MHz, DMSO-d6, ppm, inter alia) δ 6.78 (d, J=7.8Hz, 1H), 6.22 - 6.08 (m,lH), 5.55 (d, J=7.8Hz, 1H), 5.13 - 5.02 (m, 2H), 4.95 (d, J=5Hz, 1H), 4.52 (d, J=6Hz, 1H), 3.36 (AB, J=15Hz, 2H), 2.40 (s, broad, 1H), 2.15 - 2.0 (m, 3H), 1.9 - 1.8 (m, 1H), 1.35 (s, 9H), 0.81 (d, J=7Hz, 3H), 0.62 (d, J=6.6Hz, 3H)
MS (ESI, g/mol): m/z 653 [M+2Na] +
Example 4
14-0-{[(lR,2R,4R)-4-Amino-2-hydroxy-cyclohexyIsulfanyI]-acetyl}-mutilin, crystalline Form 2
Figure imgf000034_0001
Step A: 14-O-{[(li?.2i?,4i?)-4-Amino-2Thvdroxy-cyclohexylsulfanvn-acetvU-mutilin in crystalline Form 1
6.6 Kg of 14-O-{[(li?,2if,4/?)-4-tert-Butoxycarbonylamino-2-hydroxy-cyclohexyl-sulfanyl]- acetyl}-mutilin and 13.2 L of isopropanol were charged into a vessel and stirred at 20 to 25°C. 11.20 kg of 85% phosphoric acid was added and the mixture obtained was heated to approximately 50°C for at least 16 h. The mixture obtained was analyzed for reaction completion by HPLC. Upon completion of the reaction the mixture was cooled to 20 to 25°C and 52 L of CH2C12 was added. The mixture obtained was cooled to 0 to 5°C and 51 L of 30% aqueous K2CO3 solution was added over 1 h at <25°C. The mixture obtained was warmed to rt, stirred for 30 min and the pH of the aqueous layer was determined. To the mixture obtained a further 15 L of 30% aqueous K2C03 solution was added at <25°C, the mixture obtained was stirred at 15°C to 25 °C for 30 min and the two phases obtained were separated. The aqueous phase obtained was extracted with 51 L of CH2CI2 and the combined organic phases were washed with 51 L of purified water. The mixture obtained was concentrated to a volume of 25 L, 33.6 Kg of CH2C12 was added and the mixture obtained was concentrated to 25 L. To the concentrate obtained 33.6 Kg of CH2C12 was added and the mixture obtained was concentrated to 10 L. The concentration residue obtained was cooled to 18 to 22°C and 50 L of di-wopropyl ether was added over a period of 1 h. The slurry obtained was stirred at 15 to 25°C for a minimum of 2 h, filtered and the solid obtained was washed with 10 L of di-wopropyl ether and was dried.
3.79 Kg of 14-0-{[(li?,2i?,4if)-4-Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin in crystalline Form 1 was obtained.
Step B: 14-O-{r(l-R.2i?,4j?)-4-amino-2-hvdroxy-cvclohexylsulfanyl1-acetv -mutilin. in crystalline Form 2
For further purification 14-O-{[(l ?,2 ?,4i?)-4-Amino-2-hydroxy-cyclohexylsulfanyl]- acetyl}-mutilin from Step A and 18.75 L of n-butanol were heated to 88 to 92°C until complete dissolution and stirred for 30 to 60 min. The mixture obtained was allowed to cool to 40 to 45°C over at least 2 h and further stirred at this temperature for 2 h. The mixture obtained was filtered and the precipitate obtained was washed with 3.75 L of «-butanol followed by 3.75 L of MTBE. That purification procedure was repeated and the resultant product was dried in vacuo at <40°C.
3.27 Kg of crystalline 14-0-{[(li?,2if,4i?)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}- mutilin in crystalline Form 2 was obtained in the form of a white solid. lH NMR (400 MHz, CDC13, ppm, inter alia) δ 6.51 - 6.44 (m, 1H), 5.78 (d, J=8Hz, 1H), 5.38 - 5.20 (m, 2H), 3.48 - 3.40 (m, 1H), 3.36 (d, J=7Hz, 1H), 3.25 (AB, J=15Hz, 2H), 2.92 - 2.82 (m, 1H), 2.6 - 2.5 (m, 1H), 1.45 (s, 3H), 1.20 (s, 3H), 0.88 (d, J=7Hz, 3 H), 0.73 (d, J=8Hz, 3H)
MS (ESI, g/mol): m/z 508 [M+H] +
Example 5
14-0-{[(lR^/f,4R)-4-Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin, crystalline
Figure imgf000035_0001
To a solution of 900 g of 14-0-{[(li?,2i?,4i?)-4-tert-butoxycarbonylamino-2-hydroxy- cyclohexyl-sulfanyl]-acetyl}-mutilin in 9 L of CH2C12 at 15 to 25°C was added 1.8 L of TFA at 15 to 25°C and the resulting solution was stirred for 2 h. Following reaction completion the reaction mixture was concentrated under vacuum and the concentration residue obtained was azeo-dried with a total of 9 L of CH2C12. The concentrate obtained was dissolved in 4.5 L of CH2C12, the solution obtained cooled to 0 to 5°C and the pH was adjusted to pH 11 with aqueous 3.6 L 2CO3 (2.5M) solution. The biphasic mixture obtained was warmed to 15 to 20°C and stirred for 5 to 10 minutes. The layers obtained were separated, the aqueous phase obtained was extracted with 1.8 L of CH2C12, the organic phases obtained were combined, washed with 2.3 L of H20, dried over Na2S04 and concentrated to dryness under vacuum at <40°C. Crude 14-0- { [( 1 R,2R,4R)-4- Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl } -mutilin was obtained. Yield: 744 g
For further purification the following procedure was applied:
To 744 g of crude 14-O-{[(li?,2i?,4i-)-amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}- mutilin was added 2.23 L of THF and the resulting suspension was stirred at 15 to 25°C for 60 min. To the mixture obtained 7.44 L of MTBE was added over 15 to 30 min, the suspension obtained was aged for 60 min and filtered under nitrogen. The collected solids were washed with a total of 3 L of MTBE and pulled dry on the filter under nitrogen for 1.5 h.
626 g of 14-0-{[(li?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin in crystalline Form 1 was obtained.
The Ή NMR pattern confirms the structure of 14-O-{[(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl} -mutilin. The NMR pattern for 14-O-{[(l ?,2i?,4/?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin is described in example 4.
Example 6
14-0-{[(lR^ ?,4R)-4-[(2^,2-Trifluoroacetyl)-amino-2-hydroxy-cyclohexyI-sulfanyl]- acetyl}-mutilin
Procedure 1
Figure imgf000036_0001
45.3 g of {(l^,2^,4^)-4-[(2,2,2-Trifluoro-acetyl)-amino]-2-hydroxy-cyclohexyl}-benzene- carbothioate and 453 ml of CH2C12 were charged to a flask and the mixture obtained was degassed at 15-25°C with argon for 25 min. To the mixture obtained 12.79 g of hydrazine monohydrate was added dropwise followed by a 90.6 ml of CH2C12 line rinse. The mixture obtained was stirred at 20 to 25°C for 2 h and the reaction was followed by TLC until completion. Upon completion of the reaction, the mixture obtained was cooled to 15 to 20 °C and washed with 158.6 ml of 2 M HC1 solution. The phases obtained were separated, the aqueous phase obtained was returned to the vessel, 158.6 ml of saturated aqueous NaCl solution was added and the mixture obtained was back extracted with 2 x 78.8 ml of CH2C12. The combined organic phases obtained were washed with 90.6 ml of saturated aqueous NaCl solution and the organic layer obtained was concentrated to 2 volumes in vacuo at <40°C. To the concentrate obtained 226.5 ml of CH2C12 was added and the mixture obtained was concentrated to 2 volumes. To the concentrate obtained 362.4 ml of CH2C12 was added. A strip weight assay of the mixture obtained was carried out to determine the content of 2,2,2-trifluoro-N-[(li?,3i?,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-acetamide and a yield of 27.1 g was determined.
The 2,2,2-trifluoro-N-[(l/?,3 ?,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-acetamide solution (containing 27.1 g) obtained as described above was degassed with argon. 56.5 g of pleuromutilin tosylate was added, followed by a 54.3 ml of CH2C12 line rinse and the mixture obtained was stirred at 20 to 25 °C for 15 min. To the mixture obtained 34.0 g of DBU dissolved in 34 ml of CH2C12 was added over 30 min and the mixture obtained was stirred at 20 to 25 °C for 1 h until completion of the reaction. The mixture obtained was washed with 2 x 222.5 ml of 2M H2S04 followed by 2 x 222.5 ml of 5 % aqueous NaHC03 solution and the mixture obtained was concentrated to dryness in vacuo at 40 °C.
72.7 g of l4-0-{[(lR,2R,4R)- [(2,2,2-Trifluoroacetyl)-amino-2-hydroxy-cyclohexyl- sulfanyl] -acetyl }-mutilin in the form of an off-white white foam was obtained.
1H NMR (200 MHz, DMSO-d6, ppm, inter alia) δ 9.31 (d, 1H,), 6.15 (dd, J=17.8 Hz, J=l 1.1 Hz, 1H), 5.55 (d, J=7.8 Hz, 1H), 5.17 - 5.02 (m, 3H, H-20), 5.53 (d, J=5.8Hz, 1H), 3.80 - 3.60 (m, 1H), 3.50 - 3.20 (m, 4H), 2.65 - 2.41 (m, 2H), 2.29 - 1.84 (m, 6H), 1.80 - 1.40 (m, 6H), 1.40 - 1.17 (m, 9H), 1.17 - 0.95 (m, 5H), 0.82 (d, J=6.8 Hz, 3H), 0.63 (d, J=5.8 Hz, 3H)
Procedure 2
Figure imgf000037_0001
Step A: 2.2.2-Trifluoro-N-r(l/?,3i?,4i?V3-hvdroxy-4-mercapto-cyclohexyl1-acetamide 5.79 g of {(l ?,2i?,4 ?)-4-[(2,2,2-Trifluoro-acetyl)-amino]-2-hydroxy-cyclohexyl}-benzene- carbothioate was dissolved in 81 ml of dichloromethane, 1.67 g (1.62 ml) of hydrazine hydrate was added and the resulting solution was stirred at rt for 3.5 h. To the mixture obtained 40 ml of 1 M HCl was added and the biphasic mixture obtained was stirred vigorously for 10 min. Phases were separated and the organic phase obtained was washed with 40 ml of 1M HCl. The combined aqueous layers obtained were saturated with NaCl and washed with 30 ml of DCM; and the combined organic phases obtained were dried over anhydrous sodium sulfate and concentrated to dryness.
3.41 g of 2,2,2-trifluoro-N-[(li?,3i?,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-acetamide in the form of colorless crystals was obtained.
Ή NMR (200 MHz, DMSO-de, ppm, inter alia) 6 9,31 (d, J=7,2Hz, 1H), 5,12 (d, J=5,lHz, 1H), 3,82 - 3,6 (m, 1H), 3,24 - 3,09 (m, 1H), 2,62 - 2,5 (m, 1H), 2,40 (s, broad, 1H), 2,03 -
I, 84 (m, 2H), 1,74 - 1,71 (m, 1H), 1,47 - 1,21 (m, 3H)
Step B : 14-0- { Γ( 1 i?.2 ?.4/?)-r(2.2,2-Trifluoro-acetvn-amino1-2-hvdroxy-cvclohexyl- sulfanyl]-acetyl } -mutilin
5.91 g of 2,2,2-trifluoro-N-[(li?,3i?,4/?)-3-hydroxy-4-mercapto-cyclohexyl]-acetamide and
I I.78 g pleuromutilin tosylate were dissolved in 82.5 ml of DCM and the solution obtained was degassed with argon for 20 min. To the mixture obtained 6.91 g of DBU in 27.5 ml of DCM was added over 30 min. Upon completion of the reaction (TLC control) to the mixture obtained 25 ml of 2M HCl was added and the mixture obtained was stirred vigorously for 10 min. Phases obtained were separated, the organic phase obtained was washed with 12.5 ml 2M HCl and subsequently with 25 ml 5 % sodium bicarbonate solution, dried over anhydrous sodium sulfate and filtered. From the filtrate obtained solvent was evaporated in vacuo.
16.8 g of 14-0-{[(l/?,2/?,4i?)-4-[(2,2,2-trifluoro-acetyl)-amino]-2-hydroxy-cyclohexyl- sulfanyl]-acetyl}-mutilin was obtained in the form of a colorless foam, (the material contained DBU tosylate salt and residual DCM).
The Ή NMR pattern confirms the structure of 14-O-{[(li?,2i?,4/?)-4-[(2,2,2-Trifluoro- acetyl)-amino]-2-hydroxy-cyclohexyl-sulfanyl]-acetyl} -mutilin. The NMR pattern for 14-O- { [( 17?,2 ?,4i?)-4-[(2,2,2-Trifluoro-acetyl)-amino]-2-hydroxy-cyclohexyl-sulfanyl]-acetyl} - mutilin is described in example 6, procedure 1.
Example 7
14-0-{[(lR,2R,4R)-4-Amino-2-hydroxy-cyclohexylsuIfanyl]-acetyl}-mutilin, crystalline Form 2
Figure imgf000039_0001
72.7 g of crude 14-O-{[(l/?,2 ?,4i?)-4-[(2,2,2-Trifluoro-acetyl)-amino-2-hydroxy-cyclohexyl- sulfanyl] -acetyl} -mutilin, 419.9 ml of methanol and 168 ml of water were charged to a flask and the mixture obtained was warmed to 40 to 45°C. To the mixture obtained 67.3 g of
K2CO3 was added and the mixture obtained was stirred at 40 to 45 °C for 5 h. The reaction was followed by HPLC until completion. Upon completion of the reaction, the mixture obtained was cooled to 20 to 25 °C, 588 ml of CH2C12 and 588 ml of 2 M phosphoric acid were added and the mixture obtained was stirred at 20 to 25 °C for 15 min. The mixture obtained was filtered biphasically, separated, and the organic layer obtained was extracted with 588 ml of 1 M phosphoric acid. The phases obtained were separated and to the combined aqueous (product) layers obtained was added 588 ml of CH2C12 and the mixture obtained was cooled to 10 to 15 °C. To the mixture obtained 6 M NaOH was added drop wise at <25 °C until a pH of >9 was reached (275 ml required). The mixture obtained was filtered biphsaically and the layers obtained were separated. The organic (product) layer obtained was concentrated to approximately 5 volumes in vacuo at <40°C, 176 ml of CH2CI2 was added and the mixture obtained was concentrated once more to 2 vols in vacuo at <40°C. To the concentrate obtained 323.5 ml of n-butanol was added dropwise, the mixture obtained was concentrated to 5 volumes in vacuo at <40°C and the concentrate obtained was stirred at 20 to 25 °C for 2 h. The mixture obtained was filtered, the precipitate obtained was washed with 117.6 ml of w-butanol and the solid obtained was dried overnight in vacuo at 40°C producing 44.2 g of 14-0-{[(lR,2R,4R)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}- mutilin in crystalline Form 2. 44.2 g of crude 14-0-{[(lR,2R,4R)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin was charged to a clean vessel and 221 ml of w-butanol was added. The mixture obtained was heated to 88 to 92 °C, stirred for 40 min, allowed to cool at a steady rate over 3 h to 40 to 45 °C and stirred for a further 2 h. The mixture obtained was filtered, washed with 44.2 ml of «-butanol followed by 44.2 ml of MTBE and dried in vacuo at <40°C.
37.6 g of crystalline 14-O-{[(l ?,2J?,4i?)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}- mutilin in crystalline Form 2 was obtained in the form of a white crystalline solid.
The 1H NMR pattern confirms the structure of 14-O-{[(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl }-mutilin. The NMR pattern for 14-O-{[(lif,2 ?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin is described in example 4.
Example 8
tert-Butyl [(lR R,4R)-3-hydroxy-4-mercapto-cyclohexyI]-carbamate and tert-Butyl
-3-hy droxy-4-mercapto-cy clohexy 1] -carbamate
Figure imgf000040_0001
7.22 g of a mixture of {(li?,2i?,4i?)-4-[(tert-Butoxycarbonyl)-amino]-2-hydroxy- cyclohexyl}-benzene-carbothioate with {(15',25,45)-4-[(tert-Butoxycarbonyl)-amino]-2- hydroxy-cyclohexyI}-benzene-carbothioate and 72 ml of CH2CI2 were charged to a flask and the mixture obtained was stirred at 15-25°C. The mixture obtained was degassed using argon for a period of 20 minutes. To the mixture obtained 0.72 g of 1,4-dithio-DL-threitol was added and 1.5 g of hydrazine monohydrate was added dropwise. The reaction was followed by TLC until completion. Upon completion of the reaction (2.5 h), to the mixture obtained 72 ml of 1 M phosphoric acid solution was added and the mixture obtained was stirred for 15 min. The phases obtained were separated, the lower organic phase was washed with 72 ml of 1 M phosphoric acid followed by 72 ml of 1 % NaCl solution, dried over anhydrous magnesium sulfate (10 g), filtered and the solid rinsed through with 2 x 10 ml of CH2C12. The mixture obtained was concentrated in vacuo at < 40 °C. 5.01 g of a mixture of tert-Butyl [(li?,3/f,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-carbamate with tert-Butyl [(lS,3S,45)-3- hydroxy-4-mercapto-cyclohexyl]-carbamate in the form of a white solid was obtained.
1H NMR (200 MHz, DMSO-df,, ppm, inter alia) δ 6.79 (d, J=7.8Hz, 1H), 5.01 (d, J=5.6Hz, 1H), 3.40 - 3.20 (m, 1H), 3.1 - 3.0 (m, 1H), 2,38 (d, J=3.8Hz, 1H), 2.01 - 1.78 (m, 2H), 1.73 - 1.61 (m, 1H), 1.47 -1.01 (m, 12H)
Example 9
14-0-{[(lR^R,4R)-4-teri-Butoxycarbonylamino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}- mutilin and 14-0-{[(15,25,4iS)-4-ieri'-Butoxycarbonylaiiiiiio-2-hydros -cyclohexyl- sulfan I] -acety l}-mutilin
Figure imgf000041_0001
9.68 g of pleuromutilin tosylate and 101 ml of MTBE were charged to a flask and the mixture obtained was degassed at rt using argon for 5 to 10 minutes. To the mixture obtained 0.64 g of benzyl-tri-n-butylammonium chloride, 4.72 g of a mixture of tert-butyl
[(l^,3i?,4i?)-3-hydroxy-4-mercapto-cyclohexyl]-carbamate with tert-butyl [(lS,3S,4S)-3- hydroxy-4-mercapto-cyclohexyl]-carbamate and 40 ml of aqueous 1 M NaOH solution were added with stirring. The mixture obtained was stirred at 20-25 °C and the reaction was followed by HPLC until completion. Upon completion of the reaction (1 h) the layers obtained were separated and the lower aqueous layer was removed. The organic phase obtained was washed with 40 ml of aqueous 1 M NaOH solution, 2 x 40 ml of 0.1 M phosphoric acid followed by 40 ml of 10 % NaHC03 solution and 40 ml of H20. The organic liquors obtained were concentrated and dried in vacuo at < 40 °C. 11.88 g of a mixture of 14-O- { [( 1 i?,2/?,4i?)-4-tert-butoxycarbony lamino-2-hydroxy-cyc lohexyl-sulfanyl] - acetyl } -mutilin with 14-O- { [( lS,2S,4S)-4-tert-butoxycarbonylamino-2-hydroxy-cyclohexyl- sulfanyl] -acetyl }-mutilin was obtained in the form of a white foam (uncorrected for residual solvent)
1H NMR (200 MHz, DMSO-de, ppm, inter alia) δ 6.79 (d, J=7.8Hz, 1H), 6.22 - 6.07 (m, 1H), 5.55 (d, J=8Hz, 1H), 5.12 - 4.96 (m, 3H), 4.54 (d, J=6Hz, 1H), 3.55 - 3.24 (m, 4H), 2.54 - 2.50 (m, 1H), 2.41 (s, broad, 1H), 2.23 - 1.80 (m, 5H), 1.71 - 1.56 (m, 3H), 1.56 - 1.43 (m, 2H), 1.42 - 1.31 (m, 14H), 1.31 - 1.18 (m, 4H), 1.10 - 0.91 (m, 5H), 0.82 (d, J=6.6Hz, 3H), 0.63 (d, J=5.8Hz, 3H)
Example 10
14-0-{[(lR^R,4R)-4-Amino-2-hydroxy-cyclohexyIsuIfanyl]-acetyl}-mutilin, crystalline Form 2
Figure imgf000042_0001
10.69 g of a mixture of 14-O-{[(li?,2i?,4 ?)-4-tert-Butoxycarbonylamino-2-hydroxy- cyclohexyl-sulfanyl] -acetyl } -mutilin with 14-O- { [( 1 S,2S,45)-4-te^Butoxycarbonylamino- 2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin (corrected for residual solvent) and 24 ml of isopropanol were charged to a flask and the mixture obtained was stirred. To the mixture obtained 12 ml of 85 % phosphoric acid was added and the mixture obtained was heated to 50 °C overnight. Upon completion of the reaction determined by HPLC the mixture obtained was cooled to rt and 119 ml of CH2CI2 was added. The mixture obtained was cooled to 0 to 5 °C and 119 ml of 30 % aqueous K2CO3 solution was added dropwise over 1 h. The mixture obtained was warmed to rt and settled. The phases formed were separated and the lower organic (product) layer obtained was removed. The aqueous layer (measured at pH 10) obtained was extracted with 119 ml of CH2CI2 and the combined organic phases obtained were washed with 119 ml of ¾0. The organic phase obtained was concentrated to approximately 5 volumes, 59 ml of CH2CI2 was added, and the mixture obtained was concentrated again to approximately 5 volumes. To the concentrate obtained 59 ml of dichloromethane was again added and the mixture obtained was concentrated to 2 volumes. To the concentrate obtained 1 19 ml of di-isopropyl ether was added dropwise with stirring over a period of 1 h. A thick oily precipitate was obtained which became white crystals after approximately 1 h. The mixture obtained was stirred at 15 to 25 °C for 2 h, filtered, the precipitate obtained was washed with 24 ml of di-isopropyl ether and pulled dry on the filter. 8.28 g (uncorrected for residual solvent) of a mixture of 14-0-{[(li?,2i?,4i?)-4-amino-2- hydroxy-cyclohexylsulfanyl] -acetyl } -mutilin with 14-0- { [( 1 iS,2S,4S)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl }-mutilin was obtained in the form of a solid (ratio 59 : 41).
8.28 g of the crude mixture obtained and 41 ml of w-butanol were charged to a flask and the mixture obtained was heated to 88 to 92 °C with stirring for 30 min. The mixture obtained was allowed to cool to rt over approximately 3 h. Precipitation was observed to begin at -50 °C and the mixture obtained was stirred at rt overnight. The mixture obtained was filtered and the precipitate obtained was washed with 16.6 ml of «-butanol followed by 16.6 ml of MTBE and dried in vacuo at < 40 °C. 4.27 g of 14-0-{[(l ,2i?,4J?)-4-Amino-2-hydroxy- cycIohexylsulfanyl]-acetyI} -mutilin in the form of a white crystalline solid in crystalline Form 2 was obtained. The optical purity was 93% determined by chiral HPLC and the chemical purity was 99.14% area determined by RP HPLC.
In addition the comparison of the optical rotation of an authentic sample of 14-0- {[(lif,2i?,4i?)-4-Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin with the optical rotation of 14-0- { [( 1 i?,2i?,4 ?)-4-Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl} -mutilin obtained as described above confirmed the chiral purity as well; ([α]ο (CHC13) = +24.9° versus +25.9° for the authentic sample)
The resultant mother liquors from the w-butanol recrystallization were evaporated to dryness to give a white foam. 3.67 g of a mixture of 14-0-{[(lS,2S',4iS)-4-Amino-2-hydroxy- cyclohexylsulfanyl]-acetyl } -mutilin with 14-0- { [( 1 R,2R ,4i?)-4- Amino-2-hydroxy- cyclohexylsulfanyl] -acetyl} -mutilin were obtained (ratio 84.0: 16.0; determined by chiral HPLC)
The 1H NMR pattern confirms the structure of 14-O-{[(li?,2i?,4i?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl} -mutilin. The NMR pattern for 14-O-{[(l^,2^,4i?)-4-amino-2- hydroxy-cyclohexylsulfanylj-acetyl} -mutilin is described in example 4.
Example 11
14-0-{[(l/f,2R,4R)-4-Amino-2-hydroxy-cycIohexyI-sulfanyl]-acetyl}-mutilin acetate, crystalline Form A
Figure imgf000044_0001
To a suspension of 615 g 14-O-{[(l/?,2i?,4i?)-4-amino-2-hydroxy-cyclohexyl-sulfanyl]- acetyl}-mutilin in 12.3 L of methyl acetate at 50 to 55°C was added 62 ml of water and the resulting hazy solution was clarified through GF filter paper. The filtrates obtained were heated to 50 to 55°C (clear solution), 123 ml acetic acid was added, the resultant mixture was stirred at 50 to 55°C for 25 minutes, cooled to 15 to 25°C over 80 minutes and further cooled to 0 to 5°C over 60 min. The resulting suspension was aged at 0 to 5°C for 80 minutes, filtered and the filter cake was washed with 3.08 L of methyl acetate. The filter cake was pulled dry on the filter under nitrogen for 2 hours. 574.1 g of l4-0-{[(lR,2R,4R)- 4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin in the form of an acetate in the form of a crystalline, fine white powder in crystalline Form A was obtained.
The 1H NMR pattern confirms the structure of 14-O-{[(l ?,2i?,4J?)-4-Amino-2-hydroxy- cyclohexyl-sulfanyl] -acetyl }-mutilin acetate. The NMR pattern for 14-0-{[(lR,2R,4R)-4- Amino-2-hydroxy-cyclohexyl-sulfanyl] -acetyl }-mutilin acetate is described in example 12.
Example 12
14-0-{[(lR^R,4R)-4-Amino-2-hydroxy-cyclohexyl-sulfanyI]-acetyl}-mutilin acetate, cr stalline Form B
Figure imgf000044_0002
Procedure 1
To a suspension of 3260 g of 14-O-{[(li?,2i?,4i?)-4-amino-2-hydroxy-cyclohexyl-sulfanyl]- acetyl}-mutilin in 56.8 L of isopropyl acetate were added 10 g of seed crystals of 14-O- {[(li?,2i?,4i?)-4-amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin in crystalline Form B. The crystallization occurs also without adding the seed crystals. The resulting suspension was stirred at 20 to 25 °C for >10 min. To the mixture obtained was added 353 ml of acetic acid, and the mixture obtained was stirred at 20 to 25 °C for 1 h and tested for completion and polymorphic form by XRPD. The suspension obtained was stirred for a further 1 h at 20 to 25 °C, filtered, and the filter cake obtained was twice washed with 2.84 L each of isopropyl acetate. The solid obtained was dried under vacuum at 50°C for at least 12 h. 3.15 kg of 14 -O-{[(l ?,2 ?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl] -acetyl }-mutilin acetate in the form of a crystalline white solid in crystalline Form B was obtained.
Procedure 2
2.00 g of 14-O-{[(li?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin was dissolved in 6 ml of methanol. To the mixture obtained 0.338 ml of acetic acid was added in one portion and the solution obtained was stirred for 15 min. To the mixture obtained 30 ml of isopropyl acetate was added over 30 min and the resulting suspension was stirred during 30 min. The slurry obtained was heated to 30°C, 15 volumes were distilled off and 3 strips (of 3 volumes each) of isopropyl acetate were performed. The slurry obtained was filtered and the white precipitate obtained was isolated, washed with isopropylacetate and dried overnight. 1.74 g of {[(l/?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin acetate in the form of a white crystalline solid in crystalline Form B was obtained.
Ή NMR (500 MHz, DMSO-de, ppm, inter alia) δ 6.16 - 6.10 (m, 1 H), 5.54 (d, J=8.3Hz, 1H), 5.09 - 5.02 (m, 2H), 3.42 (d, J=6Hz, 1H), 3.37 (AB, J=15Hz, 2H), 3.29 - 3.25 (m, 1H), 2.77 - 2.67 (m, 1H), 2.55 - 2.5 (m, 1H), 2.40 (s, broad, 1H), 2.23 - 2.12 (m, 1H), 2.12 - 2.03 (m, 3H), 2.03 - 1.95 (m, 1H), 1.94 - 1.85 (m, 1H), 1.77 (s, 3H), 1.77 - 1.71 (m, 1H), 1.7 - 1.57 (m, 2H), 1.52 - 1.43 (m, 1H), 1.43 - 1.37 (m, lH), 1.36 (s, 3H), 1.37 - 0.96 (m, 10H), 0.81 (d, J=7Hz, 3H), 0.62 (d, J=7Hz, 3H)
Example 13
14-0-{[(lR,2R,4R)-4-Amino-2-hydroxy-cyclohexylsulfanyl]-acetyl}-mutilin L-lactate, crystalline Form 1
Figure imgf000046_0001
22 g of 14-0-{[(li?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin and 1.1 L of EtOAc were charged to a vessel. The suspension obtained was heated to 50°C and held until dissolution. To the mixture obtained 1 equivalent of 98% L-lactic acid was added and the mixture obtained was gradually cooled to 25 °C over 3 h.
Optionally 14-O-{[(li?,2/?,4/?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin L- lactate seed crystals were added. Crystallization also occurs without seed crystals.
The resultant suspension was stirred at 20-25°C overnight and further cooled to 5°C for lh. The precipitate obtained was isolated by filtration and dried in vacuo at 40°C overnight. 23.7 g of 14-0-{[(li?,2if,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin L- lactate in crystalline Form 1 was obtained.
Ή NMR (400 MHz, DMSO-d6, ppm, inter alia) δ 6.13 (dd, J=l 1 and 18Hz, 1H), 5.54 (d, J=8Hz, 1H), 5.10 - 5.01 (m, 2H), 4.53 (d, broad, 1H), 3.60 (dd, J=7 and 14Hz, 1H), 3.40 (AB, J=15Hz, 2H), 2.93 (m, 1H), 2.55 - 2.48 (m, IH), 2.39 (s, broad, 1H), 1.36 (s, 3H), 1.09 (d, J=7Hz, 3H), 1.04 (s, 3H), 0.81 (d, J=7Hz, 3H), 0.61 (d, J=7Hz, 3H).
Example 14
14-0-{[(l f,2R,4R)-4-Amino-2-hydroxy-cyclohexylsuIfanyl]-acetyl}-mutilin
h drogenmaleate, crystalline Form 1
Figure imgf000046_0002
5.5 g of 14-O-{[(li?,2if,4 -)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin and 110 ml of EtOAc were charged to a flask. The suspension obtained was heated to 80°C and held until dissolution. To the mixture obtained 10.8 ml of 1M maleic acid in THF was charged, and the mixture obtained was allowed to cool to rt overnight with stirring. Optionally 14-0- { [( 1 R,2R,4R )-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin hydrogenmaleate seed crystals were added. Crystallization occurs also without seed crystals. 6.16 g of 14-O-{[(l ?,2/?,4i?)-4-amino-2-hydroxy-cyclohexyl-sulfanyl] -acetyl }-mutilin in the form of a crystalline hydrogenmaleate salt in crystalline Form 1 was isolated by filtration and dried for 6 h in vacuo.
Ή NMR (400 MHz, DMSO-d-6, ppm, inter alia) δ 6.13 (dd, J=l 1 and 18Hz, 1H), 6.00 (s, 2H), 5.54 (d, J=8Hz, 1H), 5.10 - 5.01 (m, 2H), 4.54 (d, J=6Hz, 1H), 3.40 (AB, J=15Hz, 2H), 3.05 (m, 1H), 2.56 - 2.49 (m, 1H), 2.40 (s, broad, 1H), 1.36 (s, 3H), 1.05 (s, 3H), 0.81 (d, J=7Hz, 3H), 0.61 (d, J=7Hz, 3H).
The process to exchange the amine protecting group R in a compound of formula I is shown in REACTION SCHEME 3 below:
REACTION SCHEME 3
Figure imgf000047_0001
In REACTION SCHME 3 R represents an amino protecting group as defined above.
Example 15
14-i?-{[(lR^R,4R)-4-[(2^^-Trifluoroacetyl)-amino-2-hydroxy-cyclohexyl-sulfanyI]- acetyl}-mutilin
Figure imgf000047_0002
1 g of 14-O-{[(l ?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin and 10 ml of DCM were charged to a flask at RT and the mixture obtained was stirred. To the mixture obtained 0.41 ml of triethylamine were added dropwise, followed by 0.29 ml of trifluoroacetic anhydride and the mixture obtained was stirred until reaction completion (determined by by TLC). The mixture obtained was washed with 10 ml of 0.1 M HCl followed by 10 ml of 5% NaHC03 and 10 ml of water and concentrated to dryness.
1.20 g of 14-O-{[(l/?,2^,4i?)-4-[(2,2,2-Trifluoroacetyl)-amino-2-hydroxy-cyclohexyl- sulfanyl] -acetyl }-mutilin was obtained in the form of a foam.
The Ή NMR pattern confirms the structure of 14-0-{[(1Λ,2Λ,4Λ)-4-[(2,2,2- Trifluoroacetyl)-amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin. The NMR pattern for 14-0-{[(li?,2i-,4^)-4-[(2,2,2-Trifluoroacetyl)-amino-2-hydroxy-cyclohexyl-sulfanyl]- acetyl}-mutilin is described in example 6.
Example 16
14-0-{[(lR,2R,4R)-4-ethoxycarbonylamino-2-hydroxy-cyclohexyl-suIfanyl]-acetyl}- mutilin
Figure imgf000048_0001
1 g of 14-O-{[(li?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin and 10 ml of DCM were charged to a flask at RT and the mixture obtained was stirred. To the mixture obtained 0.41 ml of triethylamine was added dropwise, followed by 0.2 ml of ethyl chloroformate and the mixture obtained was stirred until reaction completion (determined by by TLC). The mixture obtained was washed with 10 ml of 0.1 M HCl followed by 10 ml of 5% NaHC03 and 10 ml of water and concentrated to dryness.
1.05 g of 14-O-{[(li?,2i?,4/?)-4-ethoxycarbonylamino-2-hydroxy-cyclohexyl-sulfanyl]- acetyl}-mutilin was obtained-in the form of a foam.
1H NMR (400 MHz, DMSO-d-6, ppm, inter alia) δ 7.07 (d, J=7.6Hz, 1H), 6.16 (dd, J=17.6 Hz, J=l 1.0 Hz, 1H), 5.55 (d, 1H, J=8.0 Hz), 5.13 - 4.96 (m, 3H), 4.54 (d, 1H, J=5.8Hz), 4.00 - 3.89 (q, 2H), 3.56 - 3.14 (m, 5H), 2.51' - 2.36 (m, 2H), 2.18 - 1.80 (m, 5H), 1.80 - 1.40 (m, 5H), 1.40 - 0.88 (m, 17H), 0.82 (d, J=6.8 Hz, 3H), 0.63 (d, J=5.8 Hz, 3H) Example 17
14-{?-{[(l/?,2R,4R)- 2-hydroxy-4-(phtaIimido-N-yI)-cyclohexyl-suIfanyI]-acetyl}-mutilin
Figure imgf000049_0001
1 g of 14-0-{[(li?,2i?,4i?)-4-Amino-2-hydroxy-cyclohexyl-sulfanyl]-acetyl}-mutilin and 40 ml of toluene were charged to a flask at RT and the mixture obtained was stirred. To the mixture obtained 0.41 ml of triethylamine were added dropwise, followed by 0.30 g of phthalic anhydride and the mixture obtained was heated to reflux and the water was removed under Dean-Stark conditions, until reaction completion (determined by HPLC). The mixture obtained was washed with 10 ml of 0.1 M HCl followed by 10 ml of 5% NaHC03 and 10 ml of water, dried over sodium sulfate and concentrated to dryness.
0.87 g of \4-0-{[(lR,2R,4R)- 2-hydroxy-4-(phtalimido-N-yl)-cyclohexyl-sulfanyl]-acetyl}- mutilin was obtained in the form of pale white crystals.
1H NMR (400 MHz, DMSO-d-6, ppm, inter alia) δ 7.9 - 7.7 (m, 4H), 6.17 (dd, J=17.6 Hz, J=11.2 Hz, 1H), 5.58 (d, 1H, J=7.8 Hz), 5.16 - 5.06 (m, 3H), 4.54 (d, 1H, J=6.0Hz), 4.13 - 4.01 (m, 1H), 3.62 - 3.29 (m, 4H), 2.69 - 2.60 (m, 1H), 2.43 (m, 1H), 2.30 - 1.80 (m, 8H), 1.80 - 1.15 (m, 12H), 1.1 - 0.9 (m, 4H), 0.83 (d, J=6.6 Hz, 3H), 0.65 (d, J=5.8 Hz, 3H)
The process to the starting material of formula IVa useful for the production of compounds of formula Ilia is summarized in Reaction Scheme 4 below.
REACTION SCHEME 4
Figure imgf000050_0001
Figure imgf000050_0002
In REACTION SCHME 4 R represents an amino protecting group and and Ri represents a sulfur protecting group and are as defined above.
Example 18
{(l ?,2R,4R)-4-[(ier/-Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl}-benzene- carbothioate
Step A: tert-Butyl cyclohex-3-enyl-l( f)-carbamate
Figure imgf000050_0003
1000 g of racemic cyclohex-3-ene-l-carboxylic acid was charged to a flask and 5 volumes of acetone was added. The mixture obtained was stirred, heated to 55 to 60°C and stirred for 30 min. To the mixture obtained 960.5 g of (S)-(-)-a-methylbenzylamine in 2 volumes of acetone were added dropwise over approximately 25 min. A clear, orange solution was obtained and cooled slowly. Crystallization started at 53°C (after 30 min). Full
crystallization occurred after ~lh at 49°C. The mixture obtained was cooled to rt over a further 3 h with an ice bath then stirred at rt for a further 1.5 h. The precipitate obtained was filtered off and washed with acetone. An a-methylbenzylamine salt of cyclohex-3-ene-l- carboxylic acid as set out in the reaction scheme above was obtained.
Yield (wet): 1966.9 g; optical rotation: 20[a]D = +8.05° (c=l, MeOH)
B. Salt Resolution
1966.9 g (wet) of a salt as set out under step A and 3.8 volumes of acetone were charged to a 10 L vessel and the mixture obtained was heated to 55 to 60°C. When the product had dissolved, the mixture obtained was stirred for a further 15 min and then slowly cooled to rt. Crystallization started after 1 h 10 min (53 °C). The mixture obtained was cooled to 20 to 25°C over 4.5 h and stirred at rt for a further 1.5 h. The precipitate obtained was filtered off and washed with acetone. An a-methylbenzylamine salt of cyclohex-3-ene-l-carboxylic acid wherein the R-isomer was enriched was obtained.
Yield (wet): 1143g; optical rotation: 0[a]D = +20.65° (c=l, MeOH)
Step B. was repeated until a required optical rotation (20[α]ο > 40°) was achieved.
C. Cyclohex-3-ene-l(i?)-carboxylic acid
Figure imgf000051_0001
579.6 g of cyclohex-3-ene-l(i?)-carboxylic acid (S)-(-)- α-methylbenzylamine salt and 5 volumes of MTBE were charged to a flask at 20-25°C and the mixture obtained was stirred. To the mixture obtained 10 volumes of 1M HC1 were added, the mixture obtained was stirred for 5-10 min and two layers were formed. The layers obtained were separated and the aqueous layer was extracted with MTBE. The organic layers obtained were combined and washed with brine. The organic phase obtained was dried over Na2S04, filtered, and the filter cake obtained was washed with MTBE. From the filtrate obtained solvent was removed in vacuo. Cyclohex-3-ene-l(/?)-carboxylic acid in the form of a clear oil was obtained. Yield: 301.78 g
Optical rotation 20[a]D = +83.1° (c=l, CHC13)
CycIohex-3-ene-l(/?)-carboxylic acid may be obtained in analogy to the method disclosed in Schwartz, H. M.; et al. JACS 1978, 100, 5199-5203.
D. Curtius Rearrangement to obtain fert-butyl cvclohex-3-enyl-(/?)-carbamate
Figure imgf000052_0001
305 g of cyclohex-3-ene-l(i?)-carboxylic acid and 10 volumes of toluene were charged to a flask at 20-25 °C and the mixture obtained was stirred. To the mixture obtained 1.1 equivalents of tnethylamine were added dropwise over 15 min and the mixture obtained was stirred for a further 20 min. To the mixture obtained 1.05 equivalents of DPP A were added dropwise over approximately 20 min and the temperature raised to 95 °C (exothermic reaction) with vigorous gas evolution. The mixture obtained was stirred for 15 min and heated to reflux. Progress of the reaction was followed by Ή NMR measurements until completion. The mixture obtained was cooled to 80°C over 35 min and 5 equivalents of tert- butanol were added dropwise over 10 min, followed by 7.65 g of CuCl. The mixture obtained was warmed to 100°C and stirred for a further 40 min. Progress of the reaction was followed by Ή NMR measurements until completion. The mixture obtained was cooled and 5 volumes of aqueous, saturated NaHC03 solution were added over 10 min. The mixture obtained was stirred for 20 min and left overnight. The mixture obtained was filtered and the residual solid was washed twice with toluene. The organic layers were separated and the aqueous layer was washed twice with toluene. All organic layers obtained were combined, washed with H20 and solvent was removed in vacuo. tert-Butyl cyclohex-3-enyl-l(i?)- carbamate was obtained in the form of a light brown solid. Crude Yield: 479.7 g
The crude tert-Butyl cyclohex-3-enyl-l(i?)-carbamate obtained was subjected to
chromatography. For 160 g of crude product the column was packed with 1.5 Kg silica gel, using 2.5 L of cyclohexane, and topped with sand. The crude product was loaded in 0.8 L of
5% EtOAc/cyclohexane. The column was flashed with the following gradient system, a discrete fraction being collected each time:
2% EtOAc/cyclohexane (9 x 0.8L fractions)
5% EtOAc/ cyclohexane (7 x 0.8L fractions)
10% EtOAc/ cyclohexane (4 x 0.8L fractions)
Overall yield after chromatography: 81.3% of theory
1H NMR (CDC13, 500 MHz, ppm): δ 5.64-5.67 (m, 1H), 5.56-5-60 (m, 1H), 4.54 (s, broad, 1H), 3.77 (s, broad, 1H), 2.32-2.34 (m, 1H), 2.07-2.17 (m, 2H), 1.81-1.87 (m, 2H), 1.48-1.56 (m, 1H), 1.44 (s, 9H)
,3C NMR (CDCI3, 500 MHz, ppm):): δ 155.3, 126.9, 124.5, 79.1, 45.7, 32.1, 28.4, 23.6 Step B: tert-Butyl (lR 5R,65)-(7-oxa-bicyclo[4.1.0]hept-3-yI)-carbamate
Figure imgf000053_0001
4500 g of mCPBA (70%) and 24 L of CH2C12 were charged to a vessel and the mixture obtained was cooled to 15°C. 3000 g of tert-butyl cyclohex-3-enyl-l( ?)-carbamate in 4.5 L of CH2C12 was added dropwise over approximately 30 min maintaining the temperature at 15 to 25 °C. To the mixture obtained 1.5 L of CH2C12 was added and the mixture obtained was stirred at 20 to 25°C for 1 h and heated to reflux (40°C) for 2 h. Upon completion of the reaction (Ή NMR control), the mixture was cooled to -5 to 0°C, stirred overnight and the solid precipitate obtained was filtered off and washed with CH2CI2. The resultant filtrate was washed with 10% aqueous sodium thiosulfate solution in order to remove peroxides, 10% aqueous NaHC03 solution until a pH>7 was achieved in the aqueous phase, and water. The organic phase obtained was concentrated to minimal volume and 15 L of toluene was added and the mixture obtained was concentrated again to minimal volume. This strip process was repeated two more times.2.63 Kg (2.05 Kg yield corrected for residual mCBA and toluene) of tert-Butyl (li?,3 ?,6S)-(7-oxa-bicyclo[4.1.0]hept-3-yl)-carbamate in the form of a solution in toluene was obtained.
Ή NMR (200 MHz, CDC13, ppm) δ 4.85 (d, J=7Hz, 1H), 3.6 - 3.54 (m, 1H), 3.10 (s, broad, 2H), 2.23 - 1.99 (m, 2H), 1.92 - 1.67 (m, 2H), 1.54 - 1.27 (m, 11H)
Step C: {(lR,2R,4 ?)-4-[(iert-Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl}-benzene- carbothioate
Figure imgf000054_0001
2630 g (2050 g corrected) of tert-butyl (li?,3i?,65)-(7-oxa-bicyclo[4.1.0]hept-3-yl)- carbamate in form of a solution in toluene (solution weight: 15.44 Kg) from step B above and 3.1 L of toluene were charged to a vessel and the mixture obtained was stirred at 15- 25 °C. To the mixture obtained 1.44 L of thiobenzoic acid (10%) was added dropwise. The temperature was kept below 30°C. Further 1.9 L of toluene and 85.3 g of
tetrabutylammonium chloride monohydrate in one portion were added, external temperature control was stopped, and the mixture obtained was subjected to exotherm reaction. The mixture obtained was heated to 40-45 °C and stirred for 4 h. Upon completion of the reaction (TLC and Ή NMR-control), the mixture obtained was cooled to 15 to 20°C and washed twice with 5% aqueous NaHC03 solution followed twice with H20. The organic layer obtained was concentrated in vacuo to minimum volume. 10.25 L of toluene was added and the mixture obtained was again concentrated to minimum volume. That process was repeated and the dry weight obtained was determined. All subsequent reslurry volumes are relatived to this weight.
To the crude concentration residue obtained 0.5 volumes of toluene were added under stirring and the mixture obtained was stirred at 15 to 25°C for 30 min. To the mixture obtained 0.5 volumes of heptane was added dropwise over 15 min and the mixture obtained stirred at 15 to 25°C for 40 min. The solid obtained was filtered and washed with 0.25 volumes of toluene-heptane (1 :1), followed by a slurry wash with 0.5 volumes of toluene- heptane (1 :1), followed by a displacement wash with 0.25 volumes of toluene-heptane (1:1). This procedure reduced the amount of unwanted regioisomer and thiobenzoic acid to undetectable (by 1H NMR). The solid obtained was isolated and dried in vacuo at 30°C. 1090 g of {(lJ?,27?,4 ?)-4-[(/ert-Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl}-benzene- carbothioate in the form of a white solid was obtained.
Ή NMR (200 MHz, DMSO-d6, ppm) δ 7.92 - 7.87 (m, 2H), 7.71 - 7.63 (m, 1H), 7.58 - 7.,49 (m, 2H), 6.85 (d, J=8Hz, 1H), 5.11 (d, J=5.6Hz, 1H), 3.49 - 3.25 (m, 3H), 2.12 - 1.95 (m, 2H), 1.79 - 1.69 (m, 1H), 1.54 - 1.14 (m, 12H)
An alternative process (telescoping) to obtain the starting material of formula IVa which is useful for the production of compounds of formula Ilia is summarized in REACTION SCHEME 5 below:
REACTION SCHEME 5
Figure imgf000055_0001
IVa Va wherein R represents an amino protecting group and R\ represents a sulfur protecting group and are defined as above.
Example 19
{(lR,2R,4/?)-4-[(2,2,2-Trifluoroacetyl)-aminoJ-2-hydroxy-cyclohexyl}-benzene- carbothioate
Figure imgf000056_0001
Step A: N-(Cyclohex-3-en-l(/?)-yl)-2,2.,2-trifluoro-acetamide
50 g of 3-cyclohexene-l( ? -carboxylic acid and 425 ml of chlorobenzene were charged to a flask at 20-25°C and the mixture obtained was stirred. To the mixture obtained 110 ml of triethylamine was added dropwise followed by 25 ml of chlorobenzene. The mixture obtained was warmed to 78 to 82 °C and 109.2 g of DPP A was added in a dose controlled fashion, maintaining the temperature at 80 to 90 °C and steady gas evolution and a 20 ml of chlorobenzene line rinse was given. The mixture obtained was stirred at 78 to 82 °C for 1 h until complete determined by TLC. The mixture obtained was cooled to approximately 70 °C and 226 g of trifluoroacetic acid in 34 ml of chlorobenzene was added dropwise maintaining the temperature at 70 to 80 °C, followed by 1.57 g of CuCl and a 25 ml chlorobenzene line rinse. The mixture obtained was stirred at 90 to 95 °C for 2 h and the reaction was followed by TLC until completion. The mixture obtained was cooled to 15 to 25 °C and 375 ml of 20% aqueous K2C03 solution added and the mixture obtained was stirred for 15 min. The layers obtained were separated and to the upper organic layer obtained was added 375 ml of 20% aqueous K2C03 solution. The mixture obtained was filtered through celite to remove residual solid and the celite was washed with 50 ml of chlorobenzene. The layers obtained were separated. The combined lower aqueous layers obtained were back extracted with 250 ml of chlorobenzene and the combined organic phases obtained were washed with 500 ml of 0.5 M phosphoric acid. The aqueous layer obtained was back extracted with 300 ml of chlorobenzene and the combined organic phases obtained were washed with 500 ml of 5 % aqueous NaCl solution.
A strip weight assay was carried out to determine the N-(cyclohex-3-en-l(7?)-yl)-2,2,2- trifluoro-acetamide content for use in epoxidation step B below.
The chlorobenzene solution obtained contained 69.52 g of N-(cyclohex-3-en-l(/?)-yl)-2,2,2- trifluoro-acetamide.
1H NMR (200 MHz, D6-DMSO, ppm) δ 9.33 (d, 1H), 5.69 - 5.56 (m, 2H), 3.82 (s, broad, 1H), 2.25 - 1.96 (m, 4H), 1.81 - 1.74 (m, 1H), 1.66 - 1.58 (m, 1H)
MS (ESI, g/mol): m/z 194 [M+H]+ Step B: 2,2,2-Trifluoro-N-(li?3i?.6 r)-(7-oxa-bicvclor4.1.01hept-3-yl)-acetamide
106.5 g of τη-Chloroperbenzoic acid (70%) was charged portionwise to the vessel containing the cooled (10-15°C) solution of 69.5 g of the N-(cyclohex-3-en-l(/?)-yl)-2,2,2-trifluoro- acetamide of step A maintaining temperature <30°C, and rinsed through with 69.5 ml of chlorobenzene. The mixture obtained was stirred at 20 to 25°C for lh and the reaction was followed by TLC until completion. Upon completion of the reaction, the mixture obtained was cooled to 0 to -5 °C, stirred for 30 min and the solid precipitate (wiCBA) obtained was filtered off and washed with 2 x 34.8 ml of chlorobenzene. The resultant filtrate was washed with 347.6 ml of 10% sodium thiosulfate solution to remove peroxides, and the resultant aqueous layer was back extracted with 208.6 ml of chlorobenzene. The combined organic layers obtained were washed with 347.6 ml of 5% sodium bicarbonate solution to ensure a pH > 7 of the aqueous phase and the resultant aqueous layer was back extracted with
208.6 ml of chlorobenzene. The combined organic layers were washed with 347.6 ml of water.
A strip weight assay was carried out to determine the 2,2,2-trifluoro-N-(l ?,3 ?,6S)-(7-oxa- bicyclo[4.1.0]hept-3-yl)-acetamide content.
The chlorobenzene solution obtained contained 58.64 g of 2,2,2-trifluoro-N-(li?,3i?,6S)-(7- oxa-bicyclo[4.1.0]hept-3-yl)-acetamide containing approximately 1 1% of anti (trans) epoxide and the organic solution was used for step C below (ring-opening).
1H NMR (400 MHz, D6-DMSO, ppm) δ 9.21 (d, J=7.2 Hz, 1H), 3.80 - 3.52 (m, 1H), 3.10 - 3.09 (m, 2H), 2.22 - 1.66 (m, 4H), 2.03 - 2.10 (m, 1H), 1.91 - 1.78 (m, 1H), 1.76 - 1.68 (m, 1H), 1.52 - 1.30 (m, 2H)
MS (ESI, g/mol): m/z 208 [MH]"
Step C : { ( 1 jg.2/?.4 -)-4-[(2.2,2-Trifluoro-acetyl)-amino -2-hvdroxy-cyclohexyl } -benzene- carbothioate
The chlorobenzene solution from step B containing 58.64 g of 2,2,2-trifiuoro-N-(l ?,3i?,6S)- (7-oxa-bicyclo[4.1.0]hept-3-yl)-acetamide was concentrated to approximately 5 volumes based upon epoxide. The concentrate obtained was degassed at 15-25°C with argon for 30 min and the temperature was adjusted to 15 to 20 °C. To the mixture obtained 58.1 g of thiobenzoic acid (90 %) was added dropwise ensuring a temperature below 30 °C. To the mixture obtained 17.6 ml of chlorobenzene was added to the vessel as a line rinse and 2.49 g of tetrabutylammonium chloride monohydrate was added in portions at <30°C. The mixture obtained was heated to 40-45 °C, stirred and the reaction followed by TLC until completion. Upon completion of the reaction, the mixture obtained was cooled to 0 to 5 °C, stirred for 1 h and filtered, and the filter cake obtained was washed with 2 x 58.64 ml of chlorobenzene. The solid obtained was dried in vacuo at < 40 °C. 45.5g of {(li?,2tf,4#)-4-[(2,2,2-Trifluoro- acetyl)-amino]-2-hydroxy-cyclohexyl}-benzene-carbothioate was obtained in the form of a solid.
Ή NMR (400 MHz, DMSO-d6, ppm) δ 9.38 (s, 1H), 7.91 (m, 2H), 7.68 (m, 1H), 7.55 (m, 2H), 5.23 (s, 1H), 3.80 (m, 1H), 3.55 - 3.49 (m, 1H), 3.41 - 3.34 (m, 1H), 2.13 - 2.03 (m, 2H), 1.82 - 1.79 (m, 1H), 1.60 - 1.38 (m, 3H).
MS (ESI, g/mol): m/z 348.0 [M+H] +
The process to the starting material of the mixture of compound of formula IVa with a compound of formula IVb useful for the production of the mixture of compound of formula Ilia with a compound of formula IHb is summarized in REACTION SCHEME 6 below:
REACTION SCHEME 6
Figure imgf000058_0001
wherein R represents an amino protecting group and Rl represents a sulfur protecting group and are as defined above. Example 20
{(l/f,2R,4R)-4-[(tert-Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl}-benzene- carbothioate and {(lS,2S,4S)-4-[(ter/-Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl}- benzene-carbothioate
Step A: fe -Butyl cyclohex-3 -enyl- l(i?)-carbamate and fe -Butyl cyclohex-3 -enyl- HS)- carbamate
Figure imgf000059_0001
50:0 g of 3-cyclohexene-l-carboxylic acid and 500 ml of toluene were charged to a 2 L flask at 20-25 °C, the mixture obtained was stirred and 60.7 ml of triethylamine was added dropwise over 15 min followed by dropwise addition of 89.7 ml of DPP A over 20 min (gas evolution, exotherm to ~50 °C). To the mixture obtained 50 ml of toluene was added as a line rinse. The mixture obtained was heated to reflux and stirred until the reaction was complete determined by TLC and Ή NMR. The reaction was shown to be complete after 1 h. The mixture obtained was cooled to 80 °C and 186 ml of t-BuOH was added dropwise over 10 min, followed by 1.26 g of CuCl and the mixture obtained was heated to reflux. The reaction was followed by Ή NMR, and was shown to be complete after 1 h. The mixture obtained was cooled to 20 to 25 °C and 250 ml of saturated NaHC03 solution was added over 5 to 10 min. The mixture obtained was stirred for 30 min, filtered to remove residual solid and the solid was rinsed with 25 ml of toluene. The layers were separated and the aqueous layer was extracted with 2 x 150 ml of toluene. The organic layers were combined, washed with 150 ml of water and concentrated in vacuo. 79.8 g of a mixture of tert-butyl cyclohex-3 -enyl- 1 (i?)-carbamate and rt-butyl cy clohex-3 -enyl- 1 (5)-carbamate was obtained in the form of a brown solid.
Optical Rotation: [a]D (CHC13) = 0°
Purification by Column Chromatography:
The crude mixture of tert-butyl cyclohex-3 -enyl- 1 (7?)-carbamate and tert-butyl cyclohex-3 - enyl-l(S)-carbamate was subjected to purification by column chromatography (eluent:
cyclohexane/EtOAc 9:1). The required clean fractions were identified and combined. Concentration under vacuum gave the required product. 60.88 g of a mixture of tert-Butyl cyclohex-3-enyl-l(/?)- carbamate with tert-Butyl cyclohex-3-enyl-l(S)-carbamate was obtained in the form of a white solid.
Optical Rotation: [a]D (CHCI3) = 0°
Ή NMR (200 MHz, CDC13, ppm) δ 5.69 - 5.53 (m, 2H), 4.55 (s, broad, 1H), 3.76 (s, broad, 1H), 2.41 - 2.30 (m, 1H), 2.12 - 2.08 (m, 2H), 1.91 - 1.76 (m, 2H), 1.6 - 1.48 (m, 1H), 1.43 (s, 9H)
Step B: fe -Butyl (li?.3i?.65^-(7-oxa-bicvclor4.1.01hept-3-vn-carbamate and tert-Butyl (\S3S.6R)-(7-oxa-bic\c\o\4.1.01hept-3-ylVcarbamate
Figure imgf000060_0001
45 g of τη-Chloroperbenzoic acid (70 %) and 240 ml of CH2C12 were charged to a 1 L flask and the mixture obtained was cooled to 10 to 15 °C. To the mixture obtained 30.0 g of tert- butyl cyclohex-3-enyl-l( ?)-carbamate and teri-butyl cyclohex-3-enyl-l(S)-carbamate in 45 ml of CH2CI2 was added dropwise over approximately 30 min ensuring a temperature below 25 °C. To the mixture obtained 15 ml of CH2C12 was added as a line rinse and the mixture obtained was stirred at rt for 1 h, heated to reflux (40 °C) for 2 h and followed by HPLC and TLC until completion of he reaction. Upon completion of the reaction, the mixture obtained was cooled to 0 to 5 °C, stirred for 30 min, and the solid precipitate (mCBA) obtained was filtered off and washed through with 2 x 15 ml of CH2Cl2. The resultant filtrate was washed with 3 x 150 ml of 10 % aqueous sodium thiosulfate solution to remove peroxides, followed by 3 x 150 ml of saturated sodium bicarbonate solution to ensure a pH > 7 (recorded pH = 8-9), followed by 2 x 150 ml of water. The organic layer obtained was concentrated, 150 ml of toluene was added and the mixture obtained was concentrated again. To the concentrate obtained 150 ml of toluene was added, the mixture obtained was concentrated to dryness, toluene was added to approximately 2 volumes and the mixture obtained was kept in a refrigerator before use in the next step. 25.73 g of a mixture of tert-butyl (li?,3i?,6S -(7-oxa-bicyclo[4.1.0]hept-3-yl)-carbamate and tert-butyl (lS,3S,6i?)-(7-oxa-bicyclo[4.1.0]hept-3-yl)-carbamate were obtained (the entire batch was evaporated to dryness, weighed and the contents of epoxide, mCBA and toluene were determined by NMR analysis). The material still contained mCBA and toluene.
The syn:anti ratio is 100:0 determined by Ή NMR.
Optical Rotation: [a]D (CHC13) = 0°
Ή NMR (200 MHz, CDC13, ppm) δ δ 4.82 (s, broad, 1H), 3.63 - 3.54 (m, 1H), 3.13 (s, 2H) 2.26 - 2.03 (m, 2H), 1.96 - 1.70 (m, 2H), 1.49 - 1.28 (m, 1 1H)
Step C : { ( 1 R2 RAR)-4- (tert-Butoxycarbonyl)-amino] -2-hydroxy-c vclohexyl } -benzene- carbothioate and { ( 1 S,2SAS)-4- [(te -Butoxycarbonyl Vaminol-2-hvdroxy-cvclohexyl } - benzene-carbothioate
Figure imgf000061_0001
The product solution obtained in Step B containing 20.1 g of tert-Butyl (\R,3R,6S)-(7-oxa- bicyclo[4.1.0]hept-3-yl)-carbamate and tert-Butyl (l£,3S,6 )-(7-oxa-bicycIo[4.1.0]hept-3- yl)-carbamate and 60 ml of toluene were charged to a flask, the mixture obtained was stirred at 15-25 °C and 15 ml of thiobenzoic acid were melted and charged dropwise to the mixture obtained ensuring a temperature below 30 °C. To the mixture obtained 18 ml of toluene was charged as a line rinse, 0.8 g of tetrabutylammonium chloride monohydrate was added in one portion, external temperature control was stopped and the mixture obtained was allowed to exotherm. The mixture obtained was heated to 40-45 °C and the reaction was followed by TLC until completion. Upon completion of the reaction (3 h), the mixture obtained was cooled to rt and washed twice with 2 x 101 ml of 5 % sodium bicarbonate solution followed by 2 x 101 ml of water. The organic layer obtained was concentrated in vacuo to minimum volume. 101 ml of toluene was then charged and the batch again concentrated to minimum volume. This process was repeated and further 101 ml of toluene was added to the mixture obtained and the mixture was concentrated to ~40 ml. Water content was analyzed by KF (0.04 %). To the mixture obtained 101 ml of toluene was added and the mixture obtained was concentrated to dryness. Yield of crude material: 35.29 g.
To the crude material obtained was added 17.6 ml of toluene and the mixture obtained was cooled to 10 to 15 °C with stirring, at which point a solid precipitated. The slurry obtained was stirred for 45 min. To the mixture obtained 17.6 ml of heptane was added dropwise and the mixture obtained was stirred for 1 h. The mixture obtained was filtered, the solid obtained was allowed to pull dry and given a displacement wash with toluene-heptane (1:1, 8.8 ml), followed by a slurry wash with toluene-heptane (1:1, 17.6 ml) which reduced the amount of the undesired regioisomer to undetectable by NMR analysis. The solid obtained was dried in vacuo at < 40°C. 8.24 g of a mixture of {(li?,2i?,4J?)-4-[( rt-Butoxycarbonyl)- amino]-2-hydroxyrcyclohexyl}-benzene-carbothioate with {(\S,2S,4S)-4-[(tert- Butoxycarbonyl)-amino]-2-hydroxy-cyclohexyl}-benzene-carbothioate was obtained in the form of an off-white solid.
Optical Rotation: [a]D (CHC13) = 0°
1H NMR (200 MHz, DMSO-de, ppm) δ 7.91 - 7.87 (m, 2H), 7.70 - 7.50 (m, 3H), 6.85 (d, J=6Hz, 1H), 5.13 (d, J=5,6Hz, 1H), 3.50 - 3.26 (m, 3H), 2.13 - 1.96 (m, 2H), 1.79 - 1.69 (m, 1H), 1.54 - 1.15 (m, 12H)

Claims

Patent Claims
1. A process for the preparation of a compound of formula I
Figure imgf000063_0001
in the form of a single stereoisomer in crystalline form, comprising
deprotecting the amine group
either in a compound of formula Ila
Figure imgf000063_0002
in a mixture of a compound of formula Ila with a compound of formula lib
Figure imgf000063_0003
wherein R is an amine protecting group, and
isolating a compound of formula I obtained in the form of a single diastereomer in crystalline form either directly from the reaction mixture or via recrystallization in organic solvent.
2. A compound of formula I as defined in claim 1 in the form of a single stereoisomer in crystalline form.
3. A compound according to claim 2, which is 14-0-{[(li?,2 ?,47?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl }-mutilin in crystalline Form 1.
4. A compound according to claim 2, which is 14-0-{[(l^,2i?,4/?)-4-amino-2-hydroxy- cyclohexylsulfanyl] -acetyl }-mutilin in crystalline Form 2 in the form of a n-butanol solvate.
5. A compound of formula I as defined in claim 1 in the form of a single stereoisomer in the form of a crystalline salt.
6. A crystalline salt according to claim 5, which is an acetate, lactate or hydrogenmaleate.
7. A compound according to any one of claims 5 or 6, which is selected from the group consisting of
14-0- { [( 1 ?,2/?,4i?)-4-amino-2-hydroxy-cyclohexy lsulfanyl] -acetyl } -mutilin acetate in crystalline Form A;
14-0- { [( 1 i?,2/?,4i?)-4-amino-2-hydroxy-cyclohexy lsulfanyl] -acetyl } -mutilin acetate in crystalline Form B
14-0- { [( li?,2/?,4i?)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl } -mutilin L-lactate in crystalline Form 1 , and
14-O- { [( 1 -,2 ?,4i?)-4-amino-2-hydroxy-cyclohexylsulfanyl]-acetyl } -mutilin
hydrogenmaleate in crystalline Form 1.
8. A process according to claim 1 or claim 2, wherein a compound of formula Ila,
or a mixture of a compound of formula Ila with a compound of formula lib
is obtained by coupling
either a compound of formula Ilia
Figure imgf000065_0001
a mixture of a compound of formula Ilia with a compound of formula Illb
Figure imgf000065_0002
, respectively
wherein R is as defined in claim 1 ,
with an activated 14-O-AKT-acetyl-mutilin, wherein AKT is an activating group, optionally mesyl, besyl, tosyl, or -O-AKT is halogen, optionally 14-O-AKT-acetyl- mutilin is a compound of formula
Figure imgf000065_0003
and isolating either a compound of formula Ila or mixture of a compound of formula Ila with a compound of formula lib, respectively, obtained from the reaction mixture.
9. A process according to claim 8, wherein a compound of formula Ilia, or a mixture of a compound of formula Ilia with a compound of formula Illb is obtained by deprotecting the thiol function .
either in a compound of formula IVa
Figure imgf000066_0001
or in a mixture of compound IVa with a compound of formula I Vb
Figure imgf000066_0002
, respectively
wherein R is as defined in claim 8 and Ri is a thiol protecting group,
and isolating either a compound of formula Ilia, or a mixture of a compound of formula
Ilia with a compound of formula Illb, respectively obtained from the reaction mixture.
11. A compound of formula Ila as defined in claim 1, for use as an intermediate in a process for the production of a compound of formula I as defined in claim 1, in the form of a single stereoisomer.
12. Pharmaceutical composition comprising crystalline 14-0-{[((lR,2R,4R)-4-amino-2- hydroxy-cyclohexyl)sulfanyl]acetyl}mutilin, or comprising an, optionally crystalline, acetate, lactate, or hydrogenmaleate of 14-0-{[((lR,2R,4R)-4-amino-2-hydroxy- cyclohexyl)sulfanyl] acetyl }mutilin as an active ingredient in combination with pharmaceutically acceptable carrier or diluent.
13. A compound of formula Ilia as defined in claim 8, for use as an intermediate in a process for the production of a compound of formula Ila as defined in claim 1, in the form of a single stereoisomer
14. A compound of formula Ila according to claim 1, wherein R is as defined in claim 1.
15. A compound according to claim 14, wherein R in a compound of formula Ha is tert- butoxycarbonyl or trifluoroacetyl.
16. A compound of formula Ilia according to claim 8, wherein R is as defined in claim 8.
17. A compound according to claim 16, wherein R in a compound of formula Ilia is tert- butoxycarbonyl or trifluoroacetyl.
PCT/AT2011/000237 2010-05-26 2011-05-23 Process for the preparation of pleuromutilins WO2011146954A1 (en)

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US13/699,589 US9120727B2 (en) 2010-05-26 2011-05-23 Process for the preparation of pleuromutilins
ES11724938.3T ES2659729T3 (en) 2010-05-26 2011-05-23 Crystal form of a pleuromutilin
AU2011257938A AU2011257938B2 (en) 2010-05-26 2011-05-23 Process for the preparation of pleuromutilins
DK11724938.3T DK2576505T3 (en) 2010-05-26 2011-05-23 Crystalline form of a pleuromutiline
BR112012029982-4A BR112012029982A2 (en) 2010-05-26 2011-05-23 process for the preparation of pleuromutilins
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JP2013511476A JP6038021B2 (en) 2010-05-26 2011-05-23 Process for preparing pleuromutilin
EP17197350.6A EP3299356B1 (en) 2010-05-26 2011-05-23 Process for the preparation of pleuromutilins
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PL11724938T PL2576505T3 (en) 2010-05-26 2011-05-23 Crystalline form of a pleuromutilin
MA35484A MA34332B1 (en) 2010-05-26 2011-05-23 PROCESS FOR THE PREPARATION OF PLEUROMUTILINES
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Cited By (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2016202788A1 (en) 2015-06-17 2016-12-22 Nabriva Therapeutics Ag Injectable pharmaceutical formulations of lefamulin
WO2018146264A1 (en) 2017-02-10 2018-08-16 Nabriva Therapeutics GmbH Purification of pleuromutilin
WO2021054896A1 (en) * 2019-09-18 2021-03-25 Scinopharm Taiwan, Ltd. Process for preparing elagolix sodium and intermediates thereof
WO2021209173A1 (en) 2020-04-17 2021-10-21 Nabriva Therapeutics GmbH Novel therapeutic use of pleuromutilins
WO2021209174A1 (en) 2020-04-17 2021-10-21 Nabriva Therapeutics GmbH Therapeutic use of pleuromutilins
WO2023152115A1 (en) 2022-02-09 2023-08-17 Nabriva Therapeutics GmbH Lefamulin and its derivatives for use in the treatment of a spiral shaped bacteria
EP4338732A1 (en) 2022-09-16 2024-03-20 Nabriva Therapeutics GMBH Lefamulin and its derivatives for use in the treatment of tularemia
US12121582B2 (en) * 2016-06-14 2024-10-22 Nabriva Therapeutics GmbH Injectable pharmaceutical formulations of lefamulin

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN104447294A (en) * 2014-11-24 2015-03-25 苏州乔纳森新材料科技有限公司 Chiral resolution method of 3-cyclohexene-1-formic acid
KR102664563B1 (en) 2015-06-18 2024-05-09 에스테트라, 소시에떼 아 레스폰서빌리떼 리미떼 Orally dissolvable dosage unit containing estetrol component
SI3310333T1 (en) 2015-06-18 2020-08-31 Estetra Sprl Orodispersible dosage unit containing an estetrol component
CN107417586A (en) * 2017-06-21 2017-12-01 华南农业大学 A kind of pleuromulins antibiotic and its preparation method and application
JOP20200260A1 (en) 2018-04-19 2019-10-19 Estetra Sprl Compounds and their uses for alleviating menopause-associated symptoms
TWI801561B (en) 2018-04-19 2023-05-11 比利時商依思特拉私人有限責任公司 Compounds and their uses for alleviating menopause-associated symptoms
CN111170893B (en) * 2020-01-19 2022-04-26 郑州依米花手性药物研究有限公司 Lefamulin intermediate compound and application thereof in preparation of Lefamulin

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20060276503A1 (en) * 2003-09-03 2006-12-07 Glaxo Group Limited Novel process salts compositions and use
WO2008011089A2 (en) 2006-07-20 2008-01-24 Wms Gaming Inc. Wagering game with special-event eligibility feature based on passive game play
WO2008113089A1 (en) 2007-03-20 2008-09-25 Nabriva Therapeutics Ag Pleuromutilin derivatives for the treatment of diseases mediated by microbes

Family Cites Families (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPS61207370A (en) * 1985-03-11 1986-09-13 Seitetsu Kagaku Co Ltd Production of 4-(methanesulfonyloxy)thiophenol
GB0017031D0 (en) * 2000-07-11 2000-08-30 Biochemie Gmbh Antimicrobials
SI1534678T1 (en) * 2002-07-24 2008-06-30 Nabriva Therapeutics Ag Pleuromutilin derivatives as antimicrobbials
GB0308114D0 (en) * 2003-04-08 2003-05-14 Glaxo Group Ltd Novel compounds
ATE386014T1 (en) * 2003-08-04 2008-03-15 Grindeks Jsc MELDONIUM SALTS, METHOD FOR THE PRODUCTION THEREOF AND PHARMACEUTICAL COMPOSITION BASED ON THEM
US7772240B2 (en) * 2003-08-18 2010-08-10 H. Lundbeck A/S Trans-1(6-chloro-3-phenylindan-1-yl)-3,3-dimethylpiperazine
EP1908750A1 (en) * 2006-10-05 2008-04-09 Nabriva Therapeutics Forschungs GmbH Process for the preparation of pleuromutilins
SI1961735T1 (en) * 2007-02-22 2010-01-29 Indena Spa Process for the preparation of (2r,3s)-3-phenylisoserine methyl ester acetate salt
EP2014645A1 (en) * 2007-07-13 2009-01-14 Nabriva Therapeutics AG Pleuromutilin derivatives and their use as antimicrobials
EP2159220A1 (en) * 2008-09-02 2010-03-03 Nabriva Therapeutics AG Organic compounds

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20060276503A1 (en) * 2003-09-03 2006-12-07 Glaxo Group Limited Novel process salts compositions and use
WO2008011089A2 (en) 2006-07-20 2008-01-24 Wms Gaming Inc. Wagering game with special-event eligibility feature based on passive game play
WO2008113089A1 (en) 2007-03-20 2008-09-25 Nabriva Therapeutics Ag Pleuromutilin derivatives for the treatment of diseases mediated by microbes

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
"The Merck Index"
CAIRA M R: "CRYSTALLINE POLYMORPHISM OF ORGANIC COMPOUNDS", TOPICS IN CURRENT CHEMISTRY, SPRINGER, BERLIN, DE, vol. 198, 1 January 1998 (1998-01-01), pages 163 - 208, XP001156954, ISSN: 0340-1022, ISBN: 978-3-540-36760-4, DOI: DOI:10.1007/3-540-69178-2_5 *
LEE S ET AL: "Handbook of Pharmaceutical Salts: Properties, Selection , and Use, Chapter 8 (Large-Scale Aspects of Salt Formation: Processing of Intermediates and Final Products, Chapter 12 (Monographs on Acids and Bases)", 1 January 2002, HANDBOOK OF PHARMACEUTICAL SALTS : PROPERTIES, SELECTION, AND USE, ZÜRICH : VERL. HELVETICA CHIMICA ACTA ; WEINHEIM [U.A.] : WILEY-VCH, DE, PAGE(S) 191 - 192,211, ISBN: 978-3-906390-26-0, XP002548973 *
SCHWARTZ, H. M. ET AL., JACS, vol. 100, 1978, pages 5199 - 5203
T. W. GREENE, P. G. M. WUTS: "Protective Groups in Organic Synthesis", 2007, WILEY-INTERSCIENCE, pages: 647 - 695
T. W. GREENE, P. G. M. WUTS: "Protective Groups in Organic Synthesis", 2007, WILEY-INTERSCIENCE, pages: 696 - 868

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