WO2011135058A3 - Methods for detecting epigenetic modifications - Google Patents
Methods for detecting epigenetic modifications Download PDFInfo
- Publication number
- WO2011135058A3 WO2011135058A3 PCT/EP2011/056797 EP2011056797W WO2011135058A3 WO 2011135058 A3 WO2011135058 A3 WO 2011135058A3 EP 2011056797 W EP2011056797 W EP 2011056797W WO 2011135058 A3 WO2011135058 A3 WO 2011135058A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- sample
- gene
- methylation status
- dna
- methods
- Prior art date
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/154—Methylation markers
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- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
A method of determining the methylation status of a gene, in particular at least SYNE1 in a sample, such as a blood sample, in particular a blood plasma or serum sample, comprises the following steps: (a) isolating DNA from the sample (which may be a blood sample, in particular a plasma or serum sample) (b) subjecting the isolated DNA to treatment with a reagent which selectively modifies unmethylated cytosine residues in the DNA contained in the sample to produce detectable modified residues but which does not modify methylated cytosine residues (c) amplifying both treated isolated DNA strands. Amplification occurs in a manner that investigates the methylation status of both DNA strands. Detection of amplification products may be indicative of the methylation status of the gene, in particular the SYNE1 gene. The methods may be useful diagnostically, for example to indicate cancer in a sample. Various kits, primers and probes are also provided.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US32998210P | 2010-04-30 | 2010-04-30 | |
US61/329,982 | 2010-04-30 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2011135058A2 WO2011135058A2 (en) | 2011-11-03 |
WO2011135058A3 true WO2011135058A3 (en) | 2012-09-13 |
Family
ID=44279944
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/EP2011/056797 WO2011135058A2 (en) | 2010-04-30 | 2011-04-28 | Methods for detecting epigenetic modifications |
Country Status (1)
Country | Link |
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WO (1) | WO2011135058A2 (en) |
Families Citing this family (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN104062334A (en) * | 2014-07-11 | 2014-09-24 | 福州大学 | Quantitative analysis method aiming at DNA methylation monitoring |
CN111212918A (en) * | 2017-09-15 | 2020-05-29 | 临床基因组学私人有限公司 | Methylation analysis method |
TWI791347B (en) * | 2020-12-11 | 2023-02-01 | 酷氏基因生物科技股份有限公司 | A predictive methoh for assessing the success of embryo implantation |
CN113552191B (en) * | 2021-07-28 | 2023-11-21 | 江苏师范大学 | Construction method of proportional electrochemical sensor for detecting methylated DNA based on multilayer DNA amplification loop |
CN113667726A (en) * | 2021-08-31 | 2021-11-19 | 重庆医科大学国际体外诊断研究院 | DNAzyme and three-way junction-mediated isothermal amplification reaction for detecting site-specific m6A |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2002077272A2 (en) * | 2001-03-26 | 2002-10-03 | Epigenomics Ag | Methods and nucleic acids for the analysis of hematopoietic cell proliferative disorders |
WO2008100913A2 (en) * | 2007-02-12 | 2008-08-21 | The Johns Hopkins University | Early detection and prognosis of colon cancers |
WO2010089538A2 (en) * | 2009-02-03 | 2010-08-12 | Oncomethylome Sciences Sa | Methods of detecting colorectal cancer |
Family Cites Families (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4437975A (en) | 1977-07-20 | 1984-03-20 | Mobil Oil Corporation | Manufacture of lube base stock oil |
CA1340843C (en) | 1987-07-31 | 1999-12-07 | J. Lawrence Burg | Selective amplification of target polynucleotide sequences |
BR8907830A (en) | 1988-12-16 | 1991-10-22 | Siska Diagnostics Inc | PROCESS FOR PREPARING A DOUBLE-FILAMENT DNA THAT CODES A SEQUENCE THAT MATCHES A OBJECTIVE NUCLEIC ACID SEQUENCE AND PROCESS USED FOR DETECTION OF AT LEAST ONE SPECIFIC OBJECTIVE NUCLEIC ACID SEQUENCE |
US6017704A (en) | 1996-06-03 | 2000-01-25 | The Johns Hopkins University School Of Medicine | Method of detection of methylated nucleic acid using agents which modify unmethylated cytosine and distinguishing modified methylated and non-methylated nucleic acids |
WO2004067726A2 (en) | 2003-01-29 | 2004-08-12 | Keck Graduate Institute | Isothermal reactions for the amplification of oligonucleotides |
EP1871912B1 (en) | 2005-04-15 | 2012-02-29 | Epigenomics AG | Method for determining DNA methylation in blood or urine samples |
US20070141582A1 (en) | 2005-12-15 | 2007-06-21 | Weiwei Li | Method and kit for detection of early cancer or pre-cancer using blood and body fluids |
GB0700374D0 (en) | 2007-01-09 | 2007-02-14 | Oncomethylome Sciences S A | NDRG family methylation markers |
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2011
- 2011-04-28 WO PCT/EP2011/056797 patent/WO2011135058A2/en active Application Filing
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2002077272A2 (en) * | 2001-03-26 | 2002-10-03 | Epigenomics Ag | Methods and nucleic acids for the analysis of hematopoietic cell proliferative disorders |
WO2008100913A2 (en) * | 2007-02-12 | 2008-08-21 | The Johns Hopkins University | Early detection and prognosis of colon cancers |
WO2010089538A2 (en) * | 2009-02-03 | 2010-08-12 | Oncomethylome Sciences Sa | Methods of detecting colorectal cancer |
Also Published As
Publication number | Publication date |
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WO2011135058A2 (en) | 2011-11-03 |
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