WO2011030108A1 - Jmjd2 demethylase inhibitors - Google Patents

Jmjd2 demethylase inhibitors Download PDF

Info

Publication number
WO2011030108A1
WO2011030108A1 PCT/GB2010/001713 GB2010001713W WO2011030108A1 WO 2011030108 A1 WO2011030108 A1 WO 2011030108A1 GB 2010001713 W GB2010001713 W GB 2010001713W WO 2011030108 A1 WO2011030108 A1 WO 2011030108A1
Authority
WO
WIPO (PCT)
Prior art keywords
unsubstituted
substituted
compound
alkyl
aryl
Prior art date
Application number
PCT/GB2010/001713
Other languages
French (fr)
Inventor
Christopher Joseph Schofield
Nathan Rose
Rok Sekirnik
Original Assignee
Isis Innovation Limited
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Isis Innovation Limited filed Critical Isis Innovation Limited
Publication of WO2011030108A1 publication Critical patent/WO2011030108A1/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/26Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving oxidoreductase
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/90Enzymes; Proenzymes
    • G01N2333/902Oxidoreductases (1.)
    • G01N2333/90245Oxidoreductases (1.) acting on paired donors with incorporation of molecular oxygen (1.14)
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2500/00Screening for compounds of potential therapeutic value
    • G01N2500/04Screening involving studying the effect of compounds C directly on molecule A (e.g. C are potential ligands for a receptor A, or potential substrates for an enzyme A)

Definitions

  • the present invention relates to inhibitors of JMJD2 subfamily histone lysyl demethylase enzymes.
  • the invention relates to compounds that are capable of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2- oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase, and to assays for the- identification of inhibitors of JMJD2 subfamily histone lysyl
  • JmjC domain containing proteins jmjC's
  • Fe(II) and 2- oxoglutarate (2-OG) dependent oxygenases have been shown to be histone demethylases which catalyse the demethylation of methylated lysines of histone proteins.
  • Methyl marks on histones have long been known to be associated with transcriptional control which is accomplished through modification of chromatin organisation. Blocking or modifying histone demethylation is rapidly gaining interest as a method of treating cancer. Loss of
  • trimethylation at H4 K20 and K16 is a common hallmark of human cancer and loss of the trimethylation status of H3 K27 is a predictor of poor outcome in breast, ovarian, and pancreatic cancer patients.
  • JMJD2 histone demethylases
  • JMJD2C Inhibition of JMJD2C expression suppresses cell proliferation in concordance with JMJD2C's involvement in tumor growth.
  • Members of the JMJD2 subfamily were shown to interact with and modify gene expression activity of androgen receptor.
  • Targeting stem cells in cancer treatment has been suggested as good way to stop the cancer at its earliest stages.
  • Knockdown of histone demethylases in embryonic fibroblasts have been shown to lock the cells in senescence. Summary of the Invention
  • the present invention relates to inhibitors of JMJ 2 subfamily histone lysyl demethylase enzymes.
  • the invention provides a compound that is capable of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2- oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
  • the invention also relates to methods for the identification of such inhibitors.
  • the invention provides a method of identifying an inhibitor of a JMJD2 subfamily histone lysyl demethylase, said method comprising the steps of:
  • a method of identifying a compound that promotes the release of Zn(II) ions from a JMJD2 subfamily histone lysyl demethylase comprising the steps of:
  • a pharmaceutical composition according to the invention for use in the treatment of cancer.
  • a method of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase comprising:
  • step (b) contacting a sample comprising at least one J JD2 subfamily histone lysyl demethylase and at least one 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase with the inhibitor of step (a) or with a compound of the invention.
  • Fig. 1 (a) is a representation of a crystal structure of the JMJD2 subfamily member, JMJD2A showing distinct catalytic Fe(II) and structural Zn(II) binding sites.
  • Fig. 1 (b) sets out the reaction catalyzed by JMJD2A.
  • Fig. 2 (a) shows kinetic time course data for Zn-ejection from JMJD2A by test compound lb at doses of (from top) 32 ⁇ , 16 ⁇ , 8 ⁇ , 4 ⁇ , 2 ⁇ , ⁇ and 0.5 ⁇ .
  • Fig. 2 (b) shows equivalent data for test compound 16. Linear baseline correction has been applied to compensate for temperature related signal drift.
  • Fig. 2 (c) shows dose-response curves for test compound lb (dark line/squares) and test compound 16 (lighter line/triangles).
  • Fig. 3. Non-deconvoluted ESI-MS spectra of JMJD2A incubated with disulfiram and 2,4-PDCA.
  • FIG. 3 (I) shows the mass spectrum of JMJD2A alone.
  • Fig. 3 (II) is the mass spectrum when incubated with test compound la, showing covalent modification of JMJD2A with half of one disulfiram molecule, concomitant with loss of Zn(II).
  • Fig. 3 (III) is the mass spectrum of JMJD2A when incubated with 2,4-PDCA, showing strong binding of 2,4-PDCA to JMJD2A under mild ionisation conditions (80 V sample cone voltage).
  • FIG. 3 (IV) is the mass spectrum of JMJD2A when incubated with test compound la and 2,4-PDCA and shows binding of both 2,4-PDCA and half of test compound la under mild ionisation conditions (80V sample cone voltage), together with loss of Zn(II); by contrast, Fig. 3 (V) shows the mass spectrum of JMJD2A when incubated with test compound la and 2,4-PDCA at a higher sample cone voltage (200V). Only the binding of test compound la was retained, indicating covalent modification.
  • Fig. 4 (A)(i) shows kinetic time course data for Zn-ejection from JMJD2A by test compounds comprising sulphur at 2 ⁇ , namely (from top): test compounds lb, la, and along the baseline test compounds 2, 4, 9, compound 17 and a blank (control).
  • Fig. 4 (A)(ii) shows equivalent data for selenium containing compounds at 2 ⁇ , namely (from top): test compounds 12, 16, 13, 11, 14, 15 and along the baseline a blank (control).
  • Fig. 4 (B)(i) shows the same data for compounds comprising sulphur at 50 ⁇ , with again (from top) test compounds la and lb, with all remaining compounds clustered close to the baseline.
  • Fig. 4 (B)(ii) shows the same data for compounds comprising selenium at 50 ⁇ , (from top) test compounds 12, 16, 13, 14, 15, 11 and blank along the baseline.
  • Fig. 5(A) and (B) show the effect on JMJD2A demethylase activity of preincubation of 2 ⁇ JMJD2A with, respectively, test compounds lb and 12 (both at 37 ⁇ ) for different time intervals (0-1800s) before initiation of the demethylation reaction was initiated by addition of the peptide substrate (10 ⁇ ). The reaction was quenched with MeOH after 30 minutes and demethylation analyzed by MALDI-TOF-MS. Experiments were conducted in triplicate. The minimum and the maximum JMJD2A activities observed were normalized to 0 and 1, respectively, and the plot shows (1 - fraction activity) (y-axis) against time (x-axis) indicating the dependence of JMJD2A inhibition on the duration of preincubation.
  • Fig. 5(C) and (D) show kinetic time course data for Zn-ejection from JMJD2A by, respectively, test compounds lb and 12 at (from top), 11 ⁇ , 37 ⁇ , 12.3 ⁇ , 4.1 ⁇ , 1.37 ⁇ , 0.46 ⁇ and 0 (blank control).
  • Fig. 6 shows a proposed mechanism of Zn-ejection. After the initial nucleophilic attack on a sulfur electrophile by a cysteine residue, an internal disulfide bond formation can take place with retention of covalent modification and a loss of Zn 2+ (1); internal displacement of the covalent modification leading to internal disulfide bond formation (2); after initial covalent modification of one Cys residue, another modification can take place, leading to a doubly modified Zn-binding site (3).
  • the present invention relates to inhibitors of JMJD2 subfamily histone lysyl demethylase enzymes.
  • the invention provides a compound that is capable of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2- oxoglutarate (2-OG) dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
  • 2-OG 2- oxoglutarate
  • the JMJD2 subfamily enzymes are 2-OG dependent oxygenases which are capable of demethylating both the H3 9me3/me2 and H3K36me3/me 2 marks.
  • Most inhibitors developed for 2-OG dependent oxygenases chelate the active site Fe(II) and also compete with 2-OG. Because the studied 2-OG dependent oxygenases all have a requirement for Fe(II) and have conserved Fe(II) and 2-OG binding residues, achieving selectivity between the 2- OG dependent oxygenase subfamilies with an inhibitor is challenging. Furthermore, use of an Fe(II)-chelating inhibitor in any form of therapy is difficult because of potential side-effects associated with the chelation of iron.
  • JMJD2 subfamily enzymes have a Zn(II) binding site which is considered to contribute to structural stability.
  • JMJD2A has a Cys 3 -His Zn(II) binding site (see Figure 1). None of the other 2-OG dependent oxygenase subfamilies have a comparable Zn(II) binding site.
  • a compound or inhibitor of the invention, or a compound or inhibitor identified according to a method of the invention inhibits a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate (2-OG) dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
  • a compound or inhibitor of the invention, or a compound or inhibitor identified according to a method of the invention inhibits JMJD2A and/or does not inhibit PHD2 (prolyl hydroxylase domain 2).
  • the invention provides a method of identifying an inhibitor of a JMJD2 subfamily histone lysyl demethylase, said method comprising the steps of:
  • Step (a) requires an enzyme from the JMJD2 subfamily.
  • Suitable enzymes include J JD2A, JMJD2B, JMJD2C, JMJD2D, JMJD2E and JMJD2F.
  • the enzyme is preferably JMJD2A.
  • the JMJD2 polypeptide may comprise the sequence shown in SEQ ID NO: 1 , or may be a fragment or variant of SEQ ID NO: 1 having lysyl demethylase activity. Fragments of JMJD2 are described in more detail below.
  • the JMJD2 polypeptide may have an amino acid sequence having at least about 60% sequence identity, for example at least about 70% sequence identity, with SEQ ID NO: 1 over its entire length or over an active fragment thereof, typically greater than about 80% or 90%, such as about 95% or about 99% sequence identity.
  • Sequence identity may be calculated using any suitable algorithm.
  • the UWGCG Package provides the BESTFIT program can be used to infer homology (for example used on its default settings) (Devereux et al. (1984) Nucleic Acids Research 12, p387-395).
  • the PILEUP and BLAST algorithms can be used to infer homology or line up sequences (typically on their default settings), for example as described in Latched (1993) J. Mol. Evol 36:290-300; Latched et al. (1990) J. Mol. Biol. 215:403-10.
  • the JMJD2 polypeptide may be a polypeptide encoded by any naturally occurring
  • JMJD2 gene The naturally occurring JMJD2 gene may comprise the sequence shown in SEQ ID NO: 1 or may be a variant of SEQ ID NO: 1. Such variants may include allelic variants and the deletion, modification or addition of single amino acids or groups of amino acids within the protein sequence, as long as the polypeptide retains lysyl methylase activity.
  • Amino acid substitutions of SEQ ID NO: 1 may be made, for example from about 1 , 2 or 3 to about 10, 20 or 30 substitutions. Conservative substitutions may be made, for example according to the following Table. Amino acids in the same block in the second column and preferably in the same line in the third column may be substituted for each other. ALIPHATIC Non-polar G A P
  • Variant polypeptides within the scope of the invention may be generated by any suitable method, for example by gene shuffling techniques.
  • the present invention also includes use of active portions, fragments, derivatives and functional mimetic of the polypeptides of the invention.
  • An "active portion" of a polypeptide means a peptide which is less than said full-length polypeptide, but which retains lysyl demethylase activity.
  • An active fragment of JMJD2 may typically be identified by
  • Such an active fragment may be included as part of a fusion protein.
  • the fragment may have up to about 60, 70, 80, 100, 150, 200, 300, 400, 500, 600, 700,
  • the fragment may comprise any region from about amino acid 1 to about 1064 of the amino acid sequence shown in SEQ ID NO: 1, such as from amino acid 2, 3, 4, 5 or about 10 to about amino acid 910, 920, 930, 940, 950, 960, 970, 980, 990, 1000, 1010, 1020, 1030, 1040, 1050, 1060.
  • Other suitable fragments may readily be identified, for example by comparing the JMJD2 amino acid sequence to the amino acid sequence of one or more known 2-OG dependent oxygenase and identifying which regions are homologous to regions having catalytic activity. The regions having catalytic activity are typically included in the active fragments. Such fragments can be used to construct chimeric molecules.
  • Step (b) requires a means for monitoring the release of Zn(II) ions.
  • Any suitable means may be used.
  • the means is typically a Zn(II) binding or Zn(II) -chelating agent.
  • the means typically produces a detectable signal when bound to Zn(II) ions, the signal thereby produced being proportional to the amount of Zn(II) ions present.
  • the signal is typically a fluorescent signal.
  • the signal will typically be measured as Relative Fluorescence Units (RFU), which can be converted to a quantitative measure as is normal in the art by plotting a standard curve for a given Zn(II)-binding or chelating agent.
  • REU Relative Fluorescence Units
  • the Zn(II) binding or Zn(II) - chelating agent is typically any Zn-specific chelator that fluoresces when bound to Zn(II) in solution. Suitable Zn(II)-chelating agents are commercially available, for example under the name FluoZin.
  • the method of the invention may further comprise the step of:
  • T m may be measured by any suitable method.
  • T m may be determined using differential scanning fluorimetry using methods as previously described in, for example, Niesen et al, Nat. Protocols 2007 p2212-2221).
  • An inhibitor of the invention or an inhibitor identified by a method of the invention will typically reduce the T m of a JMJD2 subfamily enzyme relative to the T m in the absence of the inhibitor.
  • An inhibitor of the invention or an inhibitor identified by a method of the invention will not increase the T m of a JMJD2 subfamily enzyme relative to the T m in the absence of the inhibitor.
  • the reduction in T m produced by an inhibitor of the invention may be at least 5°C, 6°C, 7°C, 8°C, 9°C, 10°C, 11°C, 12°C, 13°C, 14°C, 15°C, 20°C, 25°C, 30 ° C or 35°C.
  • the reduction in T m is preferably at least 10 ° C
  • the amount of Zn(II) released may be monitored as described above.
  • An inhibitor of the invention or an inhibitor identified by a method of the invention will typically increase the quantity of Zn(II) ions released relative to the amount of Zn(II) ions released in the absence of the inhibitor.
  • the amount of Zn(II) ions released will typically be at least 2 fold, 3 fold, 4 fold, 5 fold, 10 fold, 20 fold or 100 fold greater than the amount of Zn(II) ions released in the absence of the inhibitor.
  • the amount of Zn(II) ions released in the presence of an inhibitor of the invention or an inhibitor identified by a method of the invention will typically be at least 2 ⁇ when the inhibitor is present at a concentration of 5 ⁇ .
  • the IC 50 of an inhibitor of the invention or an inhibitor identified by a method of the invention will typically be no greater than 200 ⁇ , preferably no greater than 100, 90, 80, 70, 60, 50, 40, 30, 20, 19, 18, 17, 16, 15, 14, 13, 12, 1 1, 10, 9, 8, 7, 6, 5, 4, 3, 2 or ⁇ . Most preferably, the IC50 of an inhibitor of the invention or an inhibitor identified by a method of the invention will be no greater than 30 ⁇ , no greater than 50 ⁇ or no greater than 100 ⁇ . ICso may be determined by any appropriate method.
  • IC50 may be determined by a MALDI-TOF mass spectrometry (MS) turnover assay, formaldehyde dehydrogenase (FDH) coupled inhibition assay, or assays monitoring the release of labelled (typically radioactively labelled) C0 2 ..
  • MS MALDI-TOF mass spectrometry
  • FDH formaldehyde dehydrogenase
  • a JMJD2 subfamily enzyme is incubated with 2-OG and Fe(II) in the presence and absence of a potential inhibitor at various concentrations.
  • a suitable substrate for the JMJD2 subfamily enzyme is included.
  • Suitable substrates may include the native sequence of a histone protein or a fragment thereof incorporating a H3 K9 tri or di methyl-lysine and H3 K36 tri or di methyl-lysine site upon which the JMJD2 subfamily enzyme will act.
  • Suitable fragments incorporating such sites are typically 7, 8, 9, 10, 1 1 or 12 residues in length.
  • An example of a suitable fragment is the 8- residue histone H3 fragment (ARKme 3 STGGK), which comprises a H3K9me 3 site.
  • the sample is then analysed by MALDI-TOF MS.
  • the relative intensities of different methylation states of the JMJD2 subfamily enzyme substrate are observed in the mass spectra and are used to calculate percentage demethylation.
  • IC50 is calculated from the variation in percentage demethylation at different inhibitor concentrations.
  • a JMJD2 subfamily enzyme and FDH are incubated with 2-OG and Fe(II) in the presence and absence of a potential inhibitor at various concentrations.
  • a suitable substrate for the JMJD2 subfamily enzyme (as described above for the MALDI-TOF assay) is then included, together with NAD+ for the FDH reaction.
  • the coupled reaction proceeds and yields formaldehyde from the JMJD2 subfamily enzyme reaction, which provides substrate for the FDH, and accordingly NADH is produced and may be monitored, typically by spectrophotometry.
  • the relative amounts of NADH produced are used to calculate JMJD2 subfamily enzyme activity.
  • IC 50 is calculated from the variation in activity at different inhibitor concentrations.
  • Test compounds suitable for use in the method of the invention include any compound which may be reasonably expected to promote the release of Zn(II) ions from a protein Zn(II) binding site. Such compounds typically comprise selenium and/or sulphur. Examples of suitable compounds include derivatives of l-(diethylthiocarbamoyldisulfanyl)-N,N-diethyl- methanethioamide (disulfiram) or 2-phenyl-l, 2-benzisoselenazol-3(2H)-one (ebselen).
  • the test compound may be a disulfide of formula (I) as defined herein or a pharmaceutically acceptable salt thereof; an organoselenium compound of formula (II) as defined herein or a pharmaceutically acceptable salt thereof; a seleninic acid derivative of formula (III) as defined herein or a pharmaceutically acceptable salt thereof; a cyclic selenium compound of formula (IV) as defined herein or a pharmaceutically acceptable salt thereof; or a selenite salt.
  • the invention also provides compounds identified as inhibitors according to the method of the invention.
  • the invention also provides a method of identifying compounds which promote the release of Zn(II) ions from a JMJD2 subfamily enzyme comprising the steps of:
  • Release of Zn(II) ions may be monitored according to any suitable method as described above. Any suitable JMJD2 subfamily enzyme may be used as set out above.
  • the invention also provides compounds which promote the release of Zn(II) ions from a JMJD2 subfamily enzyme for use in the inhibition of a JMJD2 subfamily enzyme, wherein the compound does not also inhibit a 2-OG dependent oxygenase which is not a JMJD2 subfamily enzyme.
  • Such a use may typically be as part of an in vitro assay.
  • the invention also provides compounds which promote the release of Zn(II) ions from a JMJD2 subfamily enzyme for use in the treatment of cancer, wherein the compound does not also inhibit a 2-OG dependent oxygenase which is not a JMJD2 subfamily enzyme.
  • the JMJD2 subfamily enzymes are believed to have an important role in cell proliferation and oncogenesis. More specifically, the JMJD2 family has been implicated in esophogael squamous cell carcinoma and prostate cancer. Accordingly, the cancer to be treated by the compound of the invention may typically be esophogael cancer, prostate cancer and/or other forms of squamous cell carcinoma. The JMJD2 family has also been shown to interact with and modify gene expression activity of androgen receptors. The compound of the invention may therefore be used to treat any disease associated with androgen receptor malfunction. Prostate cancer is linked with abnormal androgen receptor activity.
  • the compound of the invention may typically be any compound which may be reasonably expected to promote the release of Zn(II) ions from a protein Zn(II) binding site.
  • Such compounds typically comprise selenium and/or sulphur.
  • suitable compounds include disulfiram, ebselen, and derivatives thereof.
  • the compound of the invention is a compound which comprises sulphur or selenium. In one embodiment, the compound is a compound which comprises sulfur. In another embodiment, the compound is a compound which comprises selenium. In another embodiment, the compound comprises both sulfur and selenium.
  • the compound of the invention is:
  • R 1 and R 2 which are the same or different, are independently selected from unsubstituted or substituted C 1-20 alkyl, unsubstituted or substituted C 2-2 o alkenyl,
  • R is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C 3 . 2 o carbocyclyl, unsubstituted or substituted C3 -20 heterocyclyl, unsubstituted or substituted ⁇ . 20 alkyl, unsubstituted or substituted C 2-20 alkenyl,
  • 2 o alkenyl and C 2-20 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C1 -4 alkyl; and R 21 is hydrogen, halo, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C 3-20 carbocyclyl, unsubstituted or substituted C 3-20 heterocyclyl, unsubstituted or substituted Ci -2 o alkyl, unsubstituted or substituted C2 -20 alkenyl, unsubstituted or substituted C 2-20 alkynyl, cyano, amino, hydroxyl, thiol,
  • Ci -10 alkylamino unsubstituted or substituted di(Ci -10 )alkylarnino, unsubstituted or substituted arylamino, unsubstituted or substituted diarylamino, unsubstituted or substituted arylalkylamino, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted acyloxy, unsubstituted or substituted Ci-io alkoxy, unsubstituted or substituted aryloxy, unsubstituted or substituted C 1-10 alkylthio, unsubstituted or substituted arylthio, or -Se-R 22 , wherein R 22 is as defined above for R 20 , wherein said C 1-2 o al
  • R is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted Cj. 20 alkyl, unsubstituted or substituted C 2-20 alkenyl,
  • R 25 is hydrogen, unsubstituted or substituted C] -20 alkyl, unsubstituted or substituted C 2-2 o alkenyl, unsubstituted or substituted C 2-20 alkynyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C 3-20 carbocyclyl, unsubstituted or substituted C 3 .
  • heterocyclyl carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido or -Se(0)R 26 , wherein R 26 is as defined above for R 24 ;
  • Ar is an unsubstituted or substituted aryl or heteroaryl ring
  • L 1 is -C(O)- or unsubstituted or substituted C 1-4 alkylene
  • X is N(R 27 ), O, S, C(O) or C(R 27 )(R 28 )-, wherein R 27 and R 28 , which are the same or different when both are present, are independently selected from hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted d- 10 alkyl, unsubstituted or substituted C 2 -i 0 alkenyl, unsubstituted or substituted C 2-10 alkynyl, unsubstituted or substituted C 3-20 carbocyclyl, unsubstituted or substituted C 3-2 o heterocyclyl, cyano, amino, halo, nitro, hydroxyl, thiol, unsubstituted or substituted C 1-10 alkylamino, unsubstituted or substituted di(Ci.
  • the compound of the invention is a disulfide of formula (I).
  • R 1 and R 2 which are the same or different, are independently selected from unsubstituted or substituted C 1- o alkyl, unsubstituted or substituted C 2 - 2 o alkenyl, unsubstituted or substituted C 2-2 o alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3 -20 heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, cyano, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, and a group of formula (lb) as defined above.
  • substituted C 1-2 o alkyl groups include alkaryl groups, as defined herein.
  • R 1 and/or R 2 may for instance be a group of formula -Z-Ar, wherein Z is alkylene and Ar is aryl or heteroaryl.
  • the disulfide of formula (I) is other than cystamine (compound 9).
  • the disulfide of formula (I) is other than the disulfide form of glutathione (compound 5).
  • the disulfide of formula (I) is other than bis(dibenzyltbiocarbamoyl) disulfide (compound lc).
  • At least one of R and R is a group of formula (lb) as defined above.
  • R 1 and R 2 which are the same or different, are groups of formula (lb) as defined above.
  • Y in the group of formula (lb) is S.
  • R 12 and R 13 in the group of formula (lb) are independently selected from hydrogen, unsubstituted or substituted CMO alkyl and unsubstituted or substituted aryl, provided that R 12 and R 13 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3 -20 heterocyclyl group or an unsubstituted or substituted heteroaryl group.
  • the disulfide of formula I) may be a thiuram disulfide of formula (la)
  • R 3 , R 4 , R 5 and R 6 are the same or different and are independently selected from hydrogen, unsubstituted or substituted C 1 -10 alkyl, unsubstituted or substituted C 2 . 10 alkenyl, unsubstituted or substituted C 2- i 0 alkynyl, unsubstituted or substituted C 3 . 20 carbocyclyl, unsubstituted or substituted C3 -20 heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, carboxy, unsubstituted or substituted ester, and unsubstituted or substituted acyl, wherein said C 1-10 alkyl, C 2 .
  • alkenyl and C 2- io alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Ci- 4 alkyl, provided that R 3 and R 4 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3- 2o heterocyclyl group or an unsubstituted or substituted heteroaryl group, and
  • R 5 and R 6 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3-20 heterocyclyl group or an- unsubstituted or substituted heteroaryl group.
  • the thiuram disulfide of formula (la) is other than
  • R 3 and R 4 are the same or different and are independently selected from unsubstituted or substituted CMO alkyl and unsubstituted or substituted aryl, provided that R and R 4 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3- 2 0 heterocyclyl group or an unsubstituted or substituted heteroaryl group, and provided that R 5 and R 6 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3 . 2 o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
  • the substituted C 1-10 alkyl group may be an aryl-substituted Ci -10 alkyl group.
  • R 3 and R 4 are the same and are selected from unsubstituted or substituted C 1-10 alkyl and unsubstituted or substituted aryl.
  • R 5 and R 6 are the same or different and are independently selected from unsubstituted or substituted C 1-10 alkyl and unsubstituted or substituted aryl, provided that R and R 4 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group, and provided that R 5 and R 6 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3-2 o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
  • the substituted C 1-10 alkyl group may be an aryl-substituted C 1-10 alkyl group.
  • R 5 and R 6 are the same and are selected from unsubstituted or substituted C 1-10 alkyl and unsubstituted or substituted aryl.
  • R 3 , R 4 , R 5 and R 6 are the same and are unsubstituted or substituted C 1-10 alkyl or unsubstituted or substituted aryl. In one embodiment, R 3 and R 4 together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group.
  • R 3 and R 4 together form a bidendate C 1-10 alkylene group, which is substituted or unsubstituted and optionally interrupted by O, S, or N(R"), wherein R" is H, aryl or C1-4 alkyl.
  • R 3 and R 4 together form a bidendate C o alkylene group which is unsubstituted, more typically an unsubstituted C 3-6 alkylene group, for instance a -CH2CH2CH2CH2- (butylene) group.
  • R 5 and R 6 together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3 . 2 o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
  • R 5 and R 6 together form a bidendate C 1-10 alkylene group, which is substituted or unsubstituted and optionally interrupted by O, S, or N(R"), wherein R" is H, aryl or Cr 4 alkyl.
  • R 3 and R 4 together form a bidendate Cj.io alkylene group which is unsubstituted, more typically an unsubstituted C -6 alkylene group, for instance a -CH 2 CH 2 CH2CH 2 - (butylene) group.
  • the thiuram disulfide of formula (la) is
  • Disulfide compounds of formula (I) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance by methods which are known in the art or by routine modifications thereof.
  • the syntheses of 1- (diemyltWocarbamoyldisulfanyl)-N,N-diethyl-methanetWoamide (compound la; disulfiram), bis(pyrrolidine-thiocarbamoyl) disulfide (compound lb) and bis(diben2ylthiocarbamoyl) disulfide (compound lc) are for instance described in the Example herein.
  • the compound of the invention is an organoselenium compound of formula (II).
  • R is unsubstituted or substituted aryl or heteroaryl; and R 21 is hydrogen, halo, unsubstituted or substituted Ci.2 0 alkyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester,
  • R 20 is unsubstituted or substituted aryl, for instance unsubstituted or substituted phenyl.
  • R 20 may for instance be unsubstituted phenyl.
  • R 21 is hydrogen, halo, unsubstituted or substituted C 1-10 alkyl, or -Se-R 22 , wherein R is as defined herein for R .
  • R may for instance be unsubstituted or substituted aryl, for instance unsubstituted or substituted phenyl.
  • R 22 may for instance be unsubstituted phenyl.
  • the organoselenium compound of formula (II) is Ph-Se-Se-Ph (compound 13), PhSeCl (compound 14), or PhSeH (compound 15).
  • Organoselenium compounds of formula (II) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance by methods which are known in the art or by routine modifications thereof.
  • the compound of the invention is a seleninic acid derivative of formula (III).
  • R 24 is unsubstituted or substituted aryl, or unsubstituted or substituted C 1-10 alkyl.
  • R 24 is unsubstituted or substituted aryl, for instance unsubstituted or substituted phenyl.
  • R 24 may for instance be unsubstituted phenyl.
  • R 25 is hydrogen.
  • the seleninic acid derivative of formula (III) is benzene seleninic acid, PhSe(0)OH (compound 12).
  • Seleninic acid derivatives of formula (III) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance by methods which are known in the art or by routine modifications thereof.
  • the compound of the invention is a cyclic selenium compound of formula (IV).
  • Ar is an unsubstituted or substituted aryl ring, for instance an unsubstituted or substituted phenyl ring.
  • Ar may be an
  • Ar is an unsubstituted aryl ring, for instance unsubstituted phenyl.
  • L 1 is -C(O)- or unsubstituted or substituted C 1-2 alkylene.
  • L 1 is -C(O)- or CH 2 (methylene). More typically, L 1 is -C(O)-.
  • X is typically N(R 27 ), O, S, C(O) or -C(R 27 )(R 28 )-, wherein R 27 and R 28 are as defined above.
  • R 27 and R 28 are both hydrogen.
  • R is as defined above. More typically, R is hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted Cno alkyl.
  • X is N(R 27 ) and R 27 is as defined hereinbefore. More typically, however, R 27 is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted Cno alkyl. In one embodiment, R 27 is an unsubstituted or substituted aryl ring, for instance an unsubstituted or substituted phenyl ring. Alternatively, R may be an unsubstituted aryl or heteroaryl ring. Usually, R is an unsubstituted aryl ring, for instance unsubstituted phenyl. Thus, X in one embodiment is N(Ph).
  • Ar is unsubstituted phenyl and the cyclic selenium compound of formula (IV) is a compound of formula (I
  • L 1 is -C(O)- or unsubstituted or substituted C 1-2 alkylene.
  • X is N(R 27 ), wherein R 27 is hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted C o alkyl.
  • R 27 is hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted C o alkyl.
  • L 1 and/or X may be as further defined herein.
  • the cyclic selenium compound of formula (IV) or (IVa) is
  • Cyclic selenium compounds of formula (IV) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance using synthesis methods which are known in the art or by routine modifications thereof.
  • the compound of the invention is a selenite salt.
  • the selenite salt is a selenite salt of formula (V)
  • X is a cation having a charge n+ wherein n is a positive integer
  • n and q are positive integers wherein n multiplied by p is equal to 2q.
  • X may for instance be a monocation, for instance an alkali metal cation such as Na + . In that case n is 1, p is 2 and q is 1.
  • X may be a dication, for instance an alkaline earth metal cation such as Ca 2+ , in which case n is 2, and p and q are both 1.
  • X may be a trication, for instance a trivalent lanthanide or actinide or a trivalent group 13 cation such as Al 3+ , in which case n is 3, p is 2 and q is 3.
  • X may be a tetravalent cation, for instance a tetravalent lanthanide or actinide, for instance Ce 4+ , in which case n is 4, p is 1 and q is 2.
  • the selenite salt is Na 2 Se0 3 .
  • Such selenite salts are- commercially available and/or may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance using synthesis methods which are known in the art or by routine modifications thereof.
  • the compound of the invention is:
  • a C 1-20 alkyl group is an unsubstituted or substituted, straight or branched chain saturated hydrocarbon radical. Typically it is C 1-10 alkyl, for example methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl or decyl, or C 1-6 alkyl, for example methyl, ethyl, propyl, butyl, pentyl or hexyl, or C 1-4 alkyl, for example methyl, ethyl, i-propyl, n-propyl, t-butyl, s-butyl or n-butyl.
  • alkyl group When an alkyl group is substituted it typically bears one or more (e.g. one, two, three or four) substituents selected from substituted or unsubstituted Ci-20 alkyl; substituted or unsubstituted aryl; substituted or unsubstituted aralkyl; cyano;
  • substituted atkyl groups include haloalkyl, hydroxyalkyl, aminoalkyl, alkoxyalkyl and alkaryl groups.
  • alkaryl as used herein, pertains to a C 1-20 alkyl group in which at least one hydrogen atom (e.g., 1, 2, 3) has been replaced with an aryl group.
  • a substituted C 1-2 o alkyl group carries 1, 2 or 3 substituents, for instance 1 or
  • a C2-20 alkenyl group or moiety is a straight or branched group or moiety, which contains from 2 to 20 carbon atoms. One or more double bonds may be present in the alkenyl group or moiety, typically one double bond.
  • a C 2 - 20 alkenyl group or moiety is typically ethenyl or a C 3-1 o alkenyl group or moiety, i.e. a C 2- i 0 alkenyl group, more typically a C 2-6 alkenyl group.
  • a C 3-10 alkenyl group or moiety is typically a C 3-6 alkenyl group or moiety, for example allyl, propenyi, butenyl, pentenyl or hexenyl.
  • a C 2- 4 alkenyl group or moiety is ethenyl, propenyi or butenyl.
  • An alkenyl group may be unsubstituted or substituted by one to four (e.g. one, two, three or four) substituents, the substituents, unless otherwise specified, being selected from those listed above for Ci -2 o alkyl groups. Where two or more substituents are present, these may be the same or different.
  • a C 2-20 alkynyl group or moiety is a straight or branched group or moiety which, unless otherwise specified, contains from 2 to 20 carbon atoms.
  • One or more triple bonds, and optionally one or more double bonds may be present in the alkynyl group or moiety, typically one triple bond.
  • a C 2-20 alkynyl group or moiety is typically ethynyl or a C 3-10 alkynyl group or moiety, i.e. a C 2-10 alkynyl group, more typically a C 2-6 alkynyl group.
  • a C 3- io alkynyl group or moiety is typically a C 3-6 alkynyl group or moiety, for example propynyl, butynyl, pentynyl or hexynyl.
  • a C 2-4 alkynyl group or moiety is ethynyl, propynyl or butynyl.
  • An alkynyl group may be unsubstituted or substituted by one to four substituents (e.g. one, two, three or four), the substituents, unless otherwise specified, being selected from those listed above for C 1-20 alkyl groups. Where two or more substituents are present, these may be the same or different.
  • An aryl ring is an unsubstituted or substituted aromatic ring of covalently linked carbon atoms.
  • the aryl ring is a 5- or 6- membered aryl ring, examples of which include cyclopentadienyl (C p ) and phenyl.
  • An aryl ring may be unsubstituted or substituted by, typically, one to four substituents (e.g. one, two, three or four), the substituents, unless otherwise specified, being selected from those listed above for C] -20 alkyl groups. Where two or more substituents are present, these may be the same or different.
  • a heteroaryl ring is an unsubstituted or substituted heteroaromatic ring of covalently linked atoms including one or more heteroatoms.
  • the one or more heteroatoms are typically selected from nitrogen, phosphorus, silicon, oxygen and sulfur (more commonly from nitrogen, oxygen and sulfur).
  • a heteroaryl ring is typically a 5- or 6- membered heteroaryl ring containing at least one heteroatom selected from nitrogen, phosphorus, silicon, oxygen and sulfur (more commonly selected from nitrogen, oxygen and sulfur). It may contain, for example, 1, 2 or 3 heteroatoms.
  • heteroaryl rings examples include pyridine, pyrazine, pyrimidine, pyridazine, furan, thiofuran, pyrazole, pyrrole, oxazole, oxadiazole, isoxazole, thiadiazole, thiazole, isothiazole, imidazole and pyrazole.
  • a heteroaryl ring may be unsubstituted or substituted by, typically, one to four substituents (e.g. one, two, three or four), the substituents, unless otherwise specified, being selected from those listed above for Ci-20 alkyl groups. Where two or more substituents are present, these may be the same or different.
  • a C 3 -2o carbocyclyl group is an unsubstituted or substituted monovalent moiety obtained by removing a hydrogen atom from an alicyclic ring atom of a carbocyclic ring of a carbocyclic compound, which moiety has from 3 to 20 carbon atoms (unless otherwise specified), including from 3 to 20 ring atoms.
  • the carbocyclyl ring may be saturated or unsaturated.
  • the term "carbocyclyl” includes the sub-classes cycloalkyl, cycloalkyenyl and cycloalkynyl.
  • each ring has from 5 to 7 ring atoms.
  • Examples of groups of C 3- 2o carbocyclyl groups include C 3- io carbocyclyl, C5-7 carbocyclyl and C 5-6 carbocyclyl. When a C 3-20 carbocyclyl group is substituted it typically bears one or more substituents
  • C 3- io carbocyclyl groups include, but are not limited to, those derived from saturated monocyclic hydrocarbon compounds:
  • unsaturated monocyclic hydrocarbon compounds cyclopropene (C 3 ), cyclobutene (C 4 ), cyclopentene (C 5 ), cyclopentadiene (C 5 ), cyclohexene (C6), cyclohexadiene (C 6 ), methylcyclopropene (C ), dimethylcyclopropene (C 5 ), methylcyclobutene (C 5 ), dimethylcyclobutene (C 6 ), methylcyclopentene (C 6 ),
  • indene C 9
  • indane e.g., 2,3-dihydro-lH-indene
  • tetraline C 9
  • a C 3-1 o cycloalkyl group or moiety is a 3- to 10- membered unsubstituted or substituted group or moiety, typically a 3 -to 6-membered group or moiety, which may be a monocyclic ring or which may consist of two or more fused rings.
  • C 3-1 o cycloalkyl groups or moieties examples include cyclopropane (C 3 ), cyclobutane (C 4 ), cyclopentane (C 5 ), cyclohexane (C 6 ), cycloheptane (C 7 ), methylcyclopropane (C 4 ), dimethylcyclopropane (C 5 ), methylcyclobutane (C 5 ), dimethylcyclobutane (C 6 ), methylc)'clopentane (C 6 ),
  • a C 3-20 heterocyclyl group is an unsubstituted or substituted monovalent, monocyclic, bicyclic or tricyclic moiety obtained by removing a hydrogen atom from a ring atom of a heterocyclic compound, which moiety has from 3 to 20 ring atoms (unless otherwise specified), of which from 1 to 10 are ring heteroatoms.
  • each ring has from 3 to 7 ring atoms, of which from 1 to 4 are ring heteroatoms.
  • heterocyclyl group is substituted it typically bears one or more substituents selected from Ci- alkyl which is unsubstituted, aryl (as defined herein), cyano, amino, Cj.io alkylamino, di(Ci -1 o)alkylamino, arylamino, diarylamino, arylalkylamino, amido, thioamido, acylamido, hydroxyl, oxo, halo, haloalkyl (e.g.
  • CF 3 carboxy, ester, acyl, acyloxy, C 1-2 o alkoxy, aryloxy, haloalkyl, sulfonic acid, sulfhydryl (i.e. thiol, -SH), Ci-io alkylthio, arylthio, and sulfonyl.
  • a substituted C 3-2 o heterocyclyl group carries 1, 2 or 3 substituents, for instance 1 or 2.
  • groups of heterocyclyl groups include C 3 .
  • Examples of monocyclic C 3- 2o heterocyclyl groups include, but are not limited to, those derived from:
  • Oj oxirane (C 3 ), oxetane (C 4 ), oxolane (tetrahydrofuran) (C 5 ), oxole (dihydrofuran) (C 5 ), oxane (tetrahydropyran) (C 6 ), dihydropyran (C 6 ), pyran (C 6 ), oxepin (C 7 );
  • N 2 imidazolidine (C 5 ), pyrrolidine (diazolidine) (C 5 ), imidazoline (C 5 ), pyrazoline
  • N1O1 tetrahydrooxazole (C 5 ), dihydrooxazole (C 5 ), tetrahydroisoxazole (C 5 ), dihydroisoxazole (C 5 ), mo holine (C 6 ), tetrahydrooxazine (C 6 ), dihydrooxazine (C 6 ), oxazine
  • NiSi thiazoline (C 5 ), thiazolidine (C 5 ), t iomo holine (C 6 );
  • O1S1 oxathiole (C 5 ) and oxathiane (thioxane) (C 6 ); and,
  • N1O1S1 oxathiazine (C 6 ).
  • An aryl group is a substituted or unsubstituted, monocyclic or bicyclic aromatic group which typically contains from 6 to 14 carbon atoms, preferably from 6 to 10 carbon atoms in the ring portion. Examples include phenyl, naphthyl, indenyl and indanyl groups. An aryl group is unsubstituted or substituted.
  • aryl group as defined above When an aryl group as defined above is substituted it typically bears one or more substiruents selected from unsubstituted or substituted d- 6 alkyl (to form an aralkyl group), aryl which is unsubstituted, cyano, amino, C 1-10 alkylamino, di(Ci- 1 o)alkylamino, arylamino, diarylamino, arylalkylamino, amido, thioamido, acylamido, hydroxyl, halo, haloalkyl (e.g.
  • CF 3 carboxy, ester, acyl, acyloxy, C 1-2 o alkoxy, aryloxy, haloalkyl, sulfhydryl (i.e. thiol, -SH), Ci-io lkylthio, arylthio, sulfonic acid and sulfonyl. Typically it carries 0, 1, 2 or 3 substituents.
  • a substituted aryl group may be substituted in two positions with a single unsubstituted or substituted C 1-6 alkylene group, or with a bidentate group represented by the formula -X-Ci -6 alkylene, or -X-C 1-6 alkylene-X-, wherein X is selected from O, S and NR, and wherein R is H, aryl or Ci -6 alkyl.
  • a substituted aryl group may be an aryl group fused with a cycloalkyl group or with a heterocyclyl group.
  • aralkyl as used herein, pertains to an aryl group in which at least one hydrogen atom (e.g., 1, 2, 3) has been substituted with a C 1-6 alkyl group.
  • groups include, but are not limited to, tolyl (from toluene), xylyl (from xylene), mesityl (from mesitylene), and cumenyl (or cumyl, from cumene), and duryl (from durene).
  • the ring atoms of an aryl group may include one or more heteroatoms, as in a heteroaryl group.
  • Such an aryl group (a heteroaryl group) is a substituted or unsubstituted mono- or bicyclic heteroaromatic group which typically contains from 6 to 10 atoms in the ring portion including one or more heteroatoms. It is generally a 5- or 6-membered ring, or two fused rings each of which is the same or different and typically independently selected from a 5-membered ring and a 6-membered ring, containing at least one heteroatom selected from O, S, N, P, Se and Si. It may contain, for example, 1, 2 or 3 heteroatoms.
  • heteroaryl groups include pyridyl, pyrazinyl, pyrimidinyl, pyridazinyl, furanyl, thienyl, pyrazolidinyl, pyrrolyl, oxazolyl, oxadiazolyl, isoxazolyl, thiadiazolyl, thiazolyl, isothiazolyl, imidazolyl, pyrazolyl, quinolyl and isoquinolyl.
  • a heteroaryl group may be unsubstituted or substituted, for instance, as specified above for aryl. Typically it carries 0, 1 , 2 or 3 substituents.
  • a C 1-10 alkylene group is an unsubstituted or substituted bidentate moiety obtained by removing two hydrogen atoms, either both from the same carbon atom, or one from each of two different carbon atoms, of a hydrocarbon compound having from 1 to 10 carbon atoms (unless otherwise specified), which may be aliphatic or alicyclic, and which may be saturated, partially unsaturated, or fully unsaturated.
  • alkylene includes the sub-classes alkenylene, alkynylene, cycloalkylene, etc., discussed below. Typically it is C 1-6 alkylene.
  • C 1-4 alkylene for example methylene, ethylene, i-propylene, n-propylene, t- butylene, s-butylene or n-butylene. It may also be pentylene, hexylene, heptylene, octylene and the various branched chain isomers thereof.
  • An alkylene group may be unsubstituted or substituted, for instance, as specified above for alkyl.
  • a substituted alkylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
  • the prefixes e.g., C 1-4 , C 1-7 , C 1-10 , C 2-7 , C 3-7 , etc.
  • the term "C ⁇ alkylene,” as used herein, pertains to an alkylene group having from 1 to 4 carbon atoms. Examples of groups of alkylene groups include C 1-4 alkylene ("lower alkylene”), Ci -7 alkylene and Ci. 10 alkylene.
  • linear saturated C 1-7 alkylene groups include, but are not limited to, -(CH 2 ) n - where n is an integer from 1 to 7, for example, -CH 2 - (methylene), -CH 2 CH 2 - (ethylene), -CH 2 CH 2 CH 2 - (propylene), and -CH 2 CH 2 CH 2 CH 2 - (butylene).
  • branched saturated C 1-7 alkylene groups include, but are not limited to, -CH(CH 3 )-, -CH(CH 3 )CH 2 -, -CH(CH 3 )CH 2 CH 2 -, -CH(CH 3 )CH 2 CH 2 CH 2 -,
  • alicyclic saturated C 1-7 alkylene groups include, but are not limited to, cyclopentylene (e.g., cyclopent-l,3-ylene), and cyclohexylene (e.g., cyclohex-l,4-ylene).
  • alicyclic partially unsaturated C 1- alkylene groups include, but are not limited to, cyclopentenylene (e.g., 4-cyclopenten-l,3-ylene), cyclohexenylene (e.g.,
  • C 1-10 alkylene, Ci -20 alkyl, C2 -20 alkenyl and C 2-2 o alkynyl groups as defined herein are either uninterrupted or interrupted by one or more heteroatoms or heterogroups, such as S, O or N(R") wherein R" is H, Ci -6 alkyl or aryl (typically phenyl), or by one or more arylene (typically phenylene) or heteroarylene groups.
  • a C 1-2 o alkyl group such as n-butyl may be interrupted by the heterogroup N(R") as follows: -CH 2 N(R")CH 2 CH 2 CH 3, -CH 2 CH 2 N(R")CH 2 CH 3 , or
  • an alkylene group such as n-butylene may be interrupted by the heterogroup N(R") as follows: -CH 2 N(R")CH 2 CH 2 CH 2 -, -CH 2 CH 2 N(R")CH 2 CH 2 -, or -CH2CH 2 CH 2 N(R")CH 2 -.
  • an interrupted group for instance an interrupted C O alkylene, C 1-20 alkyl, C 2-2 o alkenyl or C 2-20 alkynyl group, is interrupted by 1, 2 or 3
  • heteroatoms or heterogroups or by 1 , 2 or 3 arylene (typically phenylene) groups More typically, an interrupted group, for instance an interrupted C 1-10 alkylene, Ci -20 alkyl, C 2-20 alkenyl or C 2 . 20 alkynyl group, is interrupted by 1 or 2 heteroatoms or heterogroups or by 1 or 2 arylene (typically phenylene) groups.
  • a C 1-2 o alkyl group such as n-butyl may - be interrupted by 2 heterogroups N(R") as follows: -CH 2 N(R")CH 2 N(R")CH 2 CH 3 .
  • An arylene group is an unsubstituted or substituted bidentate moiety obtained by removing two hydrogen atoms, one from each of two different aromatic ring atoms of an aromatic compound, which moiety has from 5 to 14 ring atoms (unless otherwise specified). Typically, each ring has from 5 to 7 or from 5 to 6 ring atoms.
  • An arylene group may be unsubstituted or substituted, for instance, as specified above for aryl.
  • a substituted arylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
  • a heteroarylene group is an unsubstituted or substituted bidentate moiety obtained by removing two hydrogen atoms, one from each of two different aromatic ring atoms of a hetero-aromatic compound, which moiety has from 5 to 14 ring atoms (unless otherwise specified). Typically, each ring has from 5 to 7 or from 5 to 6 ring atoms.
  • a heteroarylene group may be unsubstituted or substituted, for instance, as specified above for aryl. Typically a substituted heteroarylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
  • C 5- arylene as used herein, pertains to an arylene group having 5 or 6 ring atoms.
  • Examples of groups of arylene groups include Cs -2 o arylene, C6 -20 arylene, C 5- 1 4 arylene, C 6-14 arylene, C 6-1 o arylene, C 5-1 2 arylene, Cs.jo arylene, C 5-7 arylene, C 5- arylene, C 5 arylene, and C arylene.
  • the ring atoms may be all carbon atoms, as in "carboarylene groups" (e.g., C 6 . 20 carboarylene, C6-i 4 carboarylene or C 6- i 0 carboarylene).
  • “carboarylene groups” e.g., C 6 . 20 carboarylene, C6-i 4 carboarylene or C 6- i 0 carboarylene.
  • C6-20 arylene groups which do not have ring heteroatoms include, but are not limited to, those derived from the compounds discussed above in regard to aryl groups, e.g. phenylene, and also include those derived from aryl groups which are bonded together, e.g. phenylene-phenylene (diphenylene) and
  • phenylene-phenylene-phenylene (triphenylene).
  • the ring atoms may include one or more heteroatoms, as in
  • heteroarylene groups e.g., C 5- ]o heteroarylene.
  • a heteroarylene group may be unsubstituted or substituted, for instance, as specified above for aryl.
  • a substituted heteroarylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
  • heteroarylene groups include, but are not limited to, those derived from the compounds discussed above in regard to heteroaryl groups.
  • heteroarylene groups include bidentate groups derived from pyridine, pyrazine, pyrimidine, pyridazine, furan, thiofuran, pyrazole, pyrrole, oxazole, oxadiazole, isoxazole, thiadiazole, thiazole, isothiazole, imidazole and pyrazole.
  • halo represents a group of formula: -X wherein X is a halogen atom. Typically X is F, CI, Br or I.
  • R is an acyl substituent, for example, a substituted or unsubstituted C 1-20 alkyl group, a substituted or unsubstituted C3 -2 o heterocyclyl group, or a substituted or unsubstituted aryl group.
  • R is an acyloxy substituent, for example, substituted or unsubstituted C 1-20 alkyl group, a substituted or unsubstituted C 3-20 heterocyclyl group, or a substituted or unsubstituted aryl group, typically a C 1-6 alkyl group.
  • amino represents a group of formula -N3 ⁇ 4.
  • CrC 10 alkylamino represents a group of formula -NHR' wherein R ' is a CMO alkyl group, preferably a Ci-6 alkyl group, as defined previously.
  • di(C 1-1 o)alkylamino represents a group of formula -NR'R " wherein R ' and R" are the same or different and represent unsubstituted or substituted C 1-10 alkyl groups, preferably unsubstituted or substituted C 1-6 alkyl groups, as defined previously.
  • arylamino represents a group of formula -NHR' wherein R ' is an aryl group, preferably a phenyl group, as defined previously.
  • diarylamino represents a group of formula -NR'R" wherein R ' and R" are the same or different and represent aryl groups, preferably phenyl groups, as defined previously.
  • arylalkylamino represents a group of formula -NR'R" wherein R ' is a C 1-10 alkyl group, preferably a C 1-6 alkyl group, and R" is an aryl group, preferably a phenyl group.
  • R and R are independently selected from hydrogen, unsubstituted or substituted C 1-10 alkyl, unsubstituted or substituted C 2-10 alkenyl, unsubstituted or substituted C 2 . 10 alkynyl, unsubstituted or substituted C 3-20 carbocyclyl, unsubstituted or substituted C 3-20 heterocyclyl, unsubstituted or substituted aryl, and unsubstituted or substituted heteroaryl, provided that R' and R" may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3-2 o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
  • R' and R" may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C 3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group.
  • R and R together may be (CH 2 )n, wherein n is 3 to 5, more typically 4 or 5, even more typically 4.
  • a carboxylic acid group for instance, when employed in the present invention
  • Ci-io alkylthio group is a said C 1-10 alkyl group, preferably a C 1-6 alkyl group, attached to a thio group.
  • An arylthio group is an aryl group, preferably a phenyl group, attached to a thio group.
  • a Ci-20 alkoxy group is a said substituted or unsubstituted C 1-2 o alkyl group attached to an oxygen atom.
  • a Ci -10 alkoxy group is a said substituted or unsubstituted Ci-io alkyl group attached to an oxygen atom.
  • a C ⁇ s alkoxy group is a said substituted or unsubstituted C ⁇ alkyl group attached to an oxygen atom.
  • a C 1-4 alkoxy group is a substituted or unsubstituted C alkyl group attached to an oxygen atom.
  • Said Ci -20 , CMO, C 1-6 and C 1-4 alkyl groups are optionally interrupted as defined herein. Examples of alkoxy groups include, -OMe
  • Ci- 20 alkoxy groups are -0(Adamantyl), -0-CH 2 -Adamantyl and -0-CH 2 -CH 2 -Adamantyl.
  • An aryloxy group is a substituted or unsubstituted aryl group, as defined herein, attached to an oxygen atom.
  • An example of an aryloxy group is -OPh (phenoxy).
  • a reference to carboxylic acid or carboxyl group also includes the anionic (carboxylate) form (-COO " ), a salt or solvate thereof, as well as conventional protected forms.
  • a reference to an amino group includes the protonated form (-I ⁇ HR ⁇ 2 ), a salt or solvate of the amino group, for example, a hydrochloride salt, as well as conventional protected forms of an amino group.
  • a reference to a hydroxyl group also includes the anionic form (-0 " ), a salt or solvate thereof, as well as conventional protected forms.
  • the compounds of formula (la) as defined herein therefore include forms in which one or both of the amino groups are protonated.
  • the compounds of formula (la) include the following protonated form of those compounds:
  • R 3 , R , R 5 and R 6 are as defined herein.
  • Specific examples of such compounds of formula (la) include:
  • Certain compounds may exist in one or more particular geometric, optical, enantiomeric, diasteriomeric, epimeric, atropic, stereoisomeric, tautomeric, conformational, or anomeric forms, including but not limited to, cis- and trans-forms; E- and Z-forms; c-, t-, and r- forms; endo- and exo-forms; R-, S-, and meso-forms; D- and L-forms; d- and 1-forms; (+) and (-) forms; keto-, enol-, and enolate-forms; syn- and anti-forms; synclinal- and anticlinal- forms; a- and ⁇ -forms; axial and equatorial forms; boat-, chair-, twist-, envelope-, and halfchair-forms; and combinations thereof, hereinafter collectively referred to as "isomers” (or "isomeric forms").
  • isomers are structural (or constitutional) isomers (i.e., isomers which differ in the connections between atoms rather than merely by the position of atoms in space).
  • a reference to a methoxy group, -OCH3 is not to be construed as a reference to its structural isomer, a hydroxymethyl group, -CH 2 OH.
  • a reference to ortho-chlorophenyl is not to be construed as a reference to its structural isomer, meta- chlorophenyl.
  • a reference to a class of structures may well include structurally isomeric forms falling within that class (e.g., C 1-7 alkyl includes n-propyl and iso-propyl; butyl includes n-, iso-, sec-, and tert-butyl; methoxyphenyl includes ortho-, meta-, and para- methoxyphenyl).
  • C 1-7 alkyl includes n-propyl and iso-propyl
  • butyl includes n-, iso-, sec-, and tert-butyl
  • methoxyphenyl includes ortho-, meta-, and para- methoxyphenyl.
  • H may be in any isotopic form, including 1H, 2 H (D), and 3 H (T); C may be in any isotopic form, including 12 C, C, and 14 C; O may be in any isotopic form, including 16 0 and 18 0; and the like.
  • a reference to a particular compound includes all such isomeric forms, including (wholly or partially) racemic and other mixtures thereof.
  • Methods for the preparation (e.g., asymmetric synthesis) and separation (e.g., fractional crystallisation and chromatographic means) of such isomeric forms are either known in the art or are readily obtained by adapting known methods, in a known manner.
  • a reference to a particular compound also includes ionic, salt, solvate, protected forms and prodrugs thereof.
  • Examples of pharmaceutically acceptable salts of the compounds for use in accordance with the present invention include salts with inorganic acids such as hydrochloric acid, hydrobromic acid, hydroiodic acid, sulphuric acid, nitric acid and phosphoric acid; and organic acids such as methanesulfonic acid, benzenesulphonic acid, formic acid, acetic acid, trifluoroacetic acid, propionic acid, butyric acid, isobutyric acid, oxalic acid, malonic acid, succinic acid, fumaric acid, maleic acid, lactic acid, malic acid, tartaric acid, citric acid, ethanesulfonic acid, aspartic acid, benzoic acid and glutamic acid.
  • inorganic acids such as hydrochloric acid, hydrobromic acid, hydroiodic acid, sulphuric acid, nitric acid and phosphoric acid
  • organic acids such as methanesulfonic acid, benzenesulphonic acid,
  • the salt is a hydrochloride, an acetate, a propionate, a benzoate, a butyrate or an isobutyrate.
  • pharmaceutically acceptable salts are discussed in Berge et al., 1977, "Pharmaceutically Acceptable Salts," J. Pharm. Sci., Vol. 66, pp. 1-19.
  • a prodrug of a compound for use in accordance with the present invention is a compound which, when metabolised (e.g., in vivo), yields the desired active compound.
  • the prodrug is inactive, or less active than the active compound, but may provide advantageous handling, administration, or metabolic properties.
  • the compound of the present invention can be in the free form or the salt form.
  • the compound may also be in prodrug form.
  • the prodrug can itself be in the free form or the salt form.
  • the present invention provides a method of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase, said method comprising:
  • the method may use as an inhibitor any compound of the invention as described above.
  • the method may typically be used in an in vitro assay.
  • the present invention provides compositions and formulations comprising the compounds of the invention.
  • the invention provides a pharmaceutical composition comprising one or more compounds of the invention, such as one or more compounds identified by a screening method of the invention, formulated together with a pharmaceutically acceptable carrier.
  • pharmaceutically acceptable carrier includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like that are physiologically compatible.
  • the carrier is suitable for parenteral, e.g. intravenous, intramuscular or subcutaneous administration (e.g., by injection or infusion).
  • the modulator may be coated in a material to protect the compound from the action of acids and other natural conditions that may inactivate the compound.
  • the pharmaceutical compounds of the invention may include one or more
  • a "pharmaceutically acceptable salt” refers to a salt that retains the desired biological activity of the parent compound and does not impart any undesired toxicological effects (see e.g., Berge, S.M., et al. (1977) J. Pharm. Sci. 66:1-19). Examples of such salts include acid addition salts and base addition salts.
  • Preferred pharmaceutically acceptable carriers comprise aqueous carriers or diluents.
  • aqueous carriers examples include water, buffered water and saline.
  • suitable aqueous carriers include water, buffered water and saline.
  • suitable aqueous carriers include ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate.
  • Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
  • isotonic agents for example, sugars, polyalcohols such as mannitol, sorbitol, or sodium chloride in the composition.
  • a pharmaceutical composition of the invention also may include a pharmaceutically acceptable anti-oxidant. These compositions may also contain adjuvants such as
  • preservatives wetting agents, emulsifying agents and dispersing agents.
  • Prevention of presence of microorganisms may be ensured both by sterilization procedures, supra, and by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions.
  • prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents which delay absorption such as aluminum monostearate and gelatin.
  • compositions typically must be sterile and stable under the conditions of manufacture and storage.
  • the composition can be formulated as a solution, microemulsion, liposome, or other ordered structure suitable to high drug concentration.
  • Sterile injectable solutions can be prepared by incorporating the active compound in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by sterilization microfiltration.
  • dispersions are prepared by incorporating the active compound into a sterile vehicle that contains a basic dispersion medium and the required other ingredients from those enumerated above.
  • the preferred methods of preparation are vacuum drying and freeze-drying (lyophilization) that yield a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
  • compositions of the invention may comprise additional active ingredients as well as a modulator of the invention.
  • compositions of the invention may comprise one or more compounds of the invention. They may also comprise additional therapeutic or prophylactic agents.
  • a pharmaceutical composition of the invention may additionally comprise one or more agents intended to reduce the symptoms of the bleeding disorder.
  • the composition may comprise one or more clotting factors.
  • the composition may comprise one or more other components intended to improve the condition of the patient.
  • the composition may comprise one or more analgesic, anaesthetic, immunosuppressant or anti-inflammatory agents.
  • a composition of the invention may be used in the treatment of cancer, for example esophogael cancer, prostate cancer and/or other forms of squamous cell carcinoma.
  • the JMJD2 family has also been shown to interact with and modify gene expression activity of androgen receptors.
  • the composition of the invention may therefore be used to treat any disease associated with androgen receptor malfunction.
  • Prostate cancer is linked with abnormal androgen receptor activity.
  • kits comprising compounds or compositions of the invention and instructions for use.
  • the kit may further contain one ore more additional reagents, such as an additional therapeutic or prophylactic agent as discussed above.
  • the invention also comprises kits for carrying out a method according to the invention, which will typically comprise one or more reagents including a Zn(II)-binding or chelating agent and instructions for use.
  • Test compounds la - 16 in Table were identified by the Inventors as compounds with the potential to promote the release of Zn(II) ions from JMJD2 subfamily members and are used in the subsequent experiments.
  • Compound 17 is pyridine-2,4-dicarbox ⁇ 4ic acid (2,4- PDCA), which is a known Fe(II) -chelating competitive inhibitor of 2-oxoglutarate dependent oxygenases. 2,4-PDCA is known to operate by binding to the active site.
  • Test compound lb R2 (CH 2 ) 4
  • Test compound 4 glutathione (thiol form)
  • Test compound la is also known as l-(diethylthiocarbamoyldisulfanyl)-N,N-diethyl- methanethioamide or disulfiram.
  • Test compound 16 is also known as 2-phenyl-l, 2- benzisoselenazol-3(2H)-one or ebselen. Synthesis of selected test compounds
  • Acetic anhydride (0.64 ml, 6.72 mmol) was added dropwise to a solution of 1 ,8- octanedithiol (0.31 ml, 1.68 mmol), triethylamine (1.17 ml 8.40 mmol) and DMAP (20 mg, 0.17 mmol) in dry DCM (10 ml) at room temperature under an atmosphere of nitrogen. The mixture was stirred for 4 h before the addition of sodium hydrogen carbonate solution (15 ml sat. aq.). The layers were separated and the aqueous phase extracted with DCM (2 10 ml).
  • JMJD2A and PHD2 were according to standard methods in the art (See, for example, methods reported in Ng et al, Nature 2008 p87-91 and Chowdhury et al, Structure 2009. p981-9).
  • JMJD2A, disodium 2-OG (2-oxoglutarate), ascorbic acid and [ARK(me3)STGGK-NH2] peptide solutions were made up in 50 mM HEPES buffer, pH 7.5.
  • Fe 2+ solution was prepared from (NH 4 ) 2 Fe(S0 4 ) 2 dissolved in 20 mM HC1 to make 400 mM stock solution, which was then diluted to the final concentration using MilliQ water.
  • a Novostar spectrophotometer (BMG Labtechnologies) was used for measurements of fluorescence intensity of a Zn-specific fluorophore.
  • FluoZinTM-3 (Invitrogen) was used.
  • a calibration curve for the fluorophore (between 0-2 ⁇ Zn 2+ ) was obtained with varied concentrations of Zn 2+ dissolved in MilliQ water.
  • lmM solution of FluoZinTM-3 was prepared in 50 mM HEPES buffer, pH 7.5, and then diluted in the same buffer to 10 ⁇ stock solution. 10 ⁇ , of the stock solution was pre-mixed with 10 ⁇ , of 20 ⁇ enzyme and 30 yL buffer to make the enzyme mix.
  • JMJD2A was desalted using a Bio-Spin 6 Column (Bio-Rad, Hemel Hempstead, UK) in 300 mM ammonium acetate (pH 7.5). Fe 2+ solution was prepared as described above. The protein (final concentration 15 ⁇ ) was mixed with 1 eq of Fe 2+ and 10 eq of inhibitor and incubated for 20 minutes at room temperature prior to ESI-MS analysis.
  • DSF was used to determine T m values for JMJD2A in the presence of small molecule Zn ejectors. It was performed using MiniOpticonTM Real-Time PCR Detection System (Bio-Rad). SYPRO orange (Invitrogen) dye was used for unspecifing binding to hydrophobic residues and its increase in fluorescence monitored as a function of time.
  • UL are values of minimum and maximum intensities and a corresponds to the slope of the curve within l m . All measurements were performed in triplicate.
  • Test compounds la - 16 were screened for inhibition of JMJD2A using the MALDI-TOF MS turnover assay.
  • the tested compounds as set out in Table 1 include disulfiram analogues (lb-2), as well as compounds with carbamothioate (3), thiol (4, 8), disulfide (5, 9), thioanhydride (6), thioester (7), and phenyl sulfhydryl (10) functional groups.
  • Compound 17 1.4.
  • diethylthiocarbamate (2) a reduced form of disulfiram, also did not inhibit.
  • Cystamine (9) a biologically relevant disulfide cysteine derivative, also inhibited JMJD2A in the high- micromolar range.
  • cysteamine (8) did not inhibit, suggesting that the disulfide moiety is necessary for inhibition.
  • Glutathione (GSH) was inactive in both reduced (4) and oxidized (5) forms. Because the concentration of GSH in a cell is 0.1-10 mM, it is perhaps unsurprising that it does not inhibit histone demethylases.
  • compounds 12, 14 and 16 were identified as inhibitors of JMJD2A, with IC 5 o values of 9.2 ⁇ , 26.1 ⁇ and 10.6 ⁇ respectively.
  • Non-denaturing electrospray ionization mass spectrometry was then used to further investigate the mechanism of inhibition (Figure 3).
  • Mass spectra of JMJD2A (Fig. 3.(I)-(V)) incubated with disulfiram la showed covalent modification of JMJD2A with half of one disulfiram molecule, concomitant with loss of Zn(II) (Fig. 3.(11)).
  • JMJD2A was incubated with both disulfiram (la) and 2,4-PDCA (17)
  • binding of both 17 and half of la was observed under mild ionisation conditions (80V sample cone voltage, Fig.
  • disulfiram forms a disulfide bond with one of the Zn-binding Cys residues, causing ejection of Zn(II).
  • a related mechanism operates in the ejection of Zn(II) from p300 by
  • EDPs epidithioketopiperazines
  • T m melting temperature
  • T m of JMJD2A with no compounds added 47.4 ⁇ 0.7°C.
  • JMJD2A is destabilised by Zn-ejectors (la, lb, 12, 16) and that the extent of destabilisation parallels their inhibitory potency.
  • 2,4-PDCA 17, (used at 100 ⁇ ) led to an increase in T m , consistent with the hypothesis that the mechanism of inhibition by Zn-ejectors is different from that of previously reported Fe(II)-binding JMJD2A inhibitors (such as compound 17).
  • test compounds lb and 16 were tested for inhibition of the related 2-OG dependent oxygenase, prolyl hydroxylase domain 2 (PHD2), in the MALDI-TOF MS turnover assay. Neither test compound inhibited demonstrating that Zn(II) ejection is a viable method for obtaining selective inhibition of JMJD2 subfamily enzymes over other 2-OG dependent oxygenases.

Abstract

The present invention relates to inhibitors of JMJD2 subfamily histone lysyl demethylase enzymes. In particular, the invention relates to compounds that are capable of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase, and to assays for the identification of inhibitors of JMJD2 subfamily histone lysyl demethylase enzymes.

Description

JMJ 2 DEMETHYLASE INHIBITORS
Field of the Invention
The present invention relates to inhibitors of JMJD2 subfamily histone lysyl demethylase enzymes. In particular, the invention relates to compounds that are capable of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2- oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase, and to assays for the- identification of inhibitors of JMJD2 subfamily histone lysyl
demethylase enzymes.
Background to the Invention
The JmjC domain containing proteins (jmjC's), a subfamily of Fe(II) and 2- oxoglutarate (2-OG) dependent oxygenases, have been shown to be histone demethylases which catalyse the demethylation of methylated lysines of histone proteins. Methyl marks on histones have long been known to be associated with transcriptional control which is accomplished through modification of chromatin organisation. Blocking or modifying histone demethylation is rapidly gaining interest as a method of treating cancer. Loss of
trimethylation at H4 K20 and K16 is a common hallmark of human cancer and loss of the trimethylation status of H3 K27 is a predictor of poor outcome in breast, ovarian, and pancreatic cancer patients.
Among the family of human jmjC domain histone demethylases is the subfamily JMJD2. Members of this family have been shown to interact with retinoblastoma-binding protein and class I histone deacetylases and implied to have an important role in cell proliferation and oncogenesis. The JMJD2 subfamily has been shown to demethylate histone H3 9 tri- and di-methyl-lysine and H3 K36 tri- and di- methyl-lysine. JMJD2A has been implicated in prostate cancer. Esophageal squamous carcinoma cell lines were shown to overexpress histone demethylase JMJD2C. Inhibition of JMJD2C expression suppresses cell proliferation in concordance with JMJD2C's involvement in tumor growth. Members of the JMJD2 subfamily were shown to interact with and modify gene expression activity of androgen receptor. Targeting stem cells in cancer treatment has been suggested as good way to stop the cancer at its earliest stages. Knockdown of histone demethylases in embryonic fibroblasts have been shown to lock the cells in senescence. Summary of the Invention
The present invention relates to inhibitors of JMJ 2 subfamily histone lysyl demethylase enzymes. In particular, the invention provides a compound that is capable of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2- oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
The invention also relates to methods for the identification of such inhibitors. In particular, the invention provides a method of identifying an inhibitor of a JMJD2 subfamily histone lysyl demethylase, said method comprising the steps of:
(a) contacting a JMJD2 subfamily histone lysyl demethylase with a test compound; and
(b) monitoring the release of Zn(II) ions from the JMJD2 subfamily histone lysyl demethylase, wherein the release of Zn(II) ions indicates that the compound is an inhibitor of a JMJD2 subfamily histone lysyl demethylase.
Also provided are:
A compound which promotes the release of Zn(II) ions from a JMJD2 subfamily histone lysyl demethylase for use in the inhibition of a JMJD2 subfamily histone lysyl demethylase, wherein the compound does not inhibit a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
- A compound which promotes the release of Zn(II) ions from a JMJD2 subfamily histone lysyl demethylase for use in the treatment of cancer, wherein the compound does not inhibit a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
A method of identifying a compound that promotes the release of Zn(II) ions from a JMJD2 subfamily histone lysyl demethylase, said method comprising the steps of:
(a) contacting a subfamily JMJD2 histone lysyl demethylase with a test
compound; and
(b) monitoring the release of Zn(II) ions from the JMJD2 subfamily histone lysyl demethylase.
- A pharmaceutical composition comprising
(a) an inhibitor of a subfamily JMJD2 histone lysyl demethylase identified by a method of the invention; or
(b) a compound according to the invention
and a pharmaceutically acceptable carrier or diluent. A pharmaceutical composition according to the invention for use in the treatment of cancer.
A method of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase, said method comprising:
(a) identifying an inhibitor by a method according to the invention,
(b) contacting a sample comprising at least one J JD2 subfamily histone lysyl demethylase and at least one 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase with the inhibitor of step (a) or with a compound of the invention.
A compound which is: a disulfide of formula (I) as defined herein or a
pharmaceutically acceptable salt thereof; an organoselenium compound of formula (II) as defined herein or a pharmaceutically acceptable salt thereof; a seleninic acid derivative of formula (III) as defined herein or a pharmaceutically acceptable salt thereof; a cyclic selenium compound of formula (IV) as defined herein or a pharmaceutically acceptable salt thereof; or a selenite salt; provided that the compound is other than: l-(diethylthiocarbamoyldisulfanyl)- N,N-diethyl-methanethioamide (disulfiram); bis(pyrrolidine-thiocarbamoyl) disulfide;
bis(dibenzylthiocarbamoyl) disulfide; glutathione (disulfide form); cystamine; Na2Se03; PhSeOOH; PhSeSePh; PhSeCl; PhSeH; and
Figure imgf000004_0001
Brief Description of the Figures
Fig. 1 (a) is a representation of a crystal structure of the JMJD2 subfamily member, JMJD2A showing distinct catalytic Fe(II) and structural Zn(II) binding sites.
Fig. 1 (b) sets out the reaction catalyzed by JMJD2A.
Fig. 2 (a) shows kinetic time course data for Zn-ejection from JMJD2A by test compound lb at doses of (from top) 32μ , 16μΜ, 8μΜ, 4μΜ, 2μΜ, ΙμΜ and 0.5μΜ. Fig. 2 (b) shows equivalent data for test compound 16. Linear baseline correction has been applied to compensate for temperature related signal drift. Fig. 2 (c) shows dose-response curves for test compound lb (dark line/squares) and test compound 16 (lighter line/triangles). Fig. 3. Non-deconvoluted ESI-MS spectra of JMJD2A incubated with disulfiram and 2,4-PDCA. Fig. 3 (I) shows the mass spectrum of JMJD2A alone. Fig. 3 (II) is the mass spectrum when incubated with test compound la, showing covalent modification of JMJD2A with half of one disulfiram molecule, concomitant with loss of Zn(II). Fig. 3 (III) is the mass spectrum of JMJD2A when incubated with 2,4-PDCA, showing strong binding of 2,4-PDCA to JMJD2A under mild ionisation conditions (80 V sample cone voltage). Fig. 3 (IV) is the mass spectrum of JMJD2A when incubated with test compound la and 2,4-PDCA and shows binding of both 2,4-PDCA and half of test compound la under mild ionisation conditions (80V sample cone voltage), together with loss of Zn(II); by contrast, Fig. 3 (V) shows the mass spectrum of JMJD2A when incubated with test compound la and 2,4-PDCA at a higher sample cone voltage (200V). Only the binding of test compound la was retained, indicating covalent modification.
Fig. 4 (A)(i) shows kinetic time course data for Zn-ejection from JMJD2A by test compounds comprising sulphur at 2μΜ, namely (from top): test compounds lb, la, and along the baseline test compounds 2, 4, 9, compound 17 and a blank (control). Fig. 4 (A)(ii) shows equivalent data for selenium containing compounds at 2μΜ, namely (from top): test compounds 12, 16, 13, 11, 14, 15 and along the baseline a blank (control). Fig. 4 (B)(i) shows the same data for compounds comprising sulphur at 50μΜ, with again (from top) test compounds la and lb, with all remaining compounds clustered close to the baseline. Fig. 4 (B)(ii) shows the same data for compounds comprising selenium at 50μΜ, (from top) test compounds 12, 16, 13, 14, 15, 11 and blank along the baseline.
Fig. 5(A) and (B) show the effect on JMJD2A demethylase activity of preincubation of 2μΜ JMJD2A with, respectively, test compounds lb and 12 (both at 37μΜ) for different time intervals (0-1800s) before initiation of the demethylation reaction was initiated by addition of the peptide substrate (10 μΜ). The reaction was quenched with MeOH after 30 minutes and demethylation analyzed by MALDI-TOF-MS. Experiments were conducted in triplicate. The minimum and the maximum JMJD2A activities observed were normalized to 0 and 1, respectively, and the plot shows (1 - fraction activity) (y-axis) against time (x-axis) indicating the dependence of JMJD2A inhibition on the duration of preincubation. Fig. 5(C) and (D) show kinetic time course data for Zn-ejection from JMJD2A by, respectively, test compounds lb and 12 at (from top), 11 ΙμΜ, 37 μΜ, 12.3 μΜ, 4.1 μΜ, 1.37 μΜ, 0.46 μΜ and 0 (blank control).
Fig. 6 shows a proposed mechanism of Zn-ejection. After the initial nucleophilic attack on a sulfur electrophile by a cysteine residue, an internal disulfide bond formation can take place with retention of covalent modification and a loss of Zn2+(1); internal displacement of the covalent modification leading to internal disulfide bond formation (2); after initial covalent modification of one Cys residue, another modification can take place, leading to a doubly modified Zn-binding site (3).
Detailed Description of the Invention
The present invention relates to inhibitors of JMJD2 subfamily histone lysyl demethylase enzymes. In particular, the invention provides a compound that is capable of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2- oxoglutarate (2-OG) dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
The JMJD2 subfamily enzymes are 2-OG dependent oxygenases which are capable of demethylating both the H3 9me3/me2 and H3K36me3/me 2 marks. Most inhibitors developed for 2-OG dependent oxygenases chelate the active site Fe(II) and also compete with 2-OG. Because the studied 2-OG dependent oxygenases all have a requirement for Fe(II) and have conserved Fe(II) and 2-OG binding residues, achieving selectivity between the 2- OG dependent oxygenase subfamilies with an inhibitor is challenging. Furthermore, use of an Fe(II)-chelating inhibitor in any form of therapy is difficult because of potential side-effects associated with the chelation of iron.
However, unlike related 2-OG dependent oxygenases, the JMJD2 subfamily enzymes have a Zn(II) binding site which is considered to contribute to structural stability. For example, JMJD2A has a Cys3-His Zn(II) binding site (see Figure 1). None of the other 2-OG dependent oxygenase subfamilies have a comparable Zn(II) binding site. Thus, a compound or inhibitor of the invention, or a compound or inhibitor identified according to a method of the invention inhibits a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate (2-OG) dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase. For example, a compound or inhibitor of the invention, or a compound or inhibitor identified according to a method of the invention inhibits JMJD2A and/or does not inhibit PHD2 (prolyl hydroxylase domain 2).
The invention provides a method of identifying an inhibitor of a JMJD2 subfamily histone lysyl demethylase, said method comprising the steps of:
(a) contacting a JMJD2 subfamily histone lysyl demethylase with a test compound; and (b) monitoring the release of Zn(II) ions from the JMJD2 subfamily histone lysyl demethylase, wherein the release of Zn(II) ions indicates that the compound is an inhibitor of a JMJD2 subfamily histone lysyl demethylase.
Step (a) requires an enzyme from the JMJD2 subfamily. Suitable enzymes include J JD2A, JMJD2B, JMJD2C, JMJD2D, JMJD2E and JMJD2F. The enzyme is preferably JMJD2A.
The JMJD2 polypeptide may comprise the sequence shown in SEQ ID NO: 1 , or may be a fragment or variant of SEQ ID NO: 1 having lysyl demethylase activity. Fragments of JMJD2 are described in more detail below. The JMJD2 polypeptide may have an amino acid sequence having at least about 60% sequence identity, for example at least about 70% sequence identity, with SEQ ID NO: 1 over its entire length or over an active fragment thereof, typically greater than about 80% or 90%, such as about 95% or about 99% sequence identity.
Sequence identity may be calculated using any suitable algorithm. For example, the UWGCG Package provides the BESTFIT program can be used to infer homology (for example used on its default settings) (Devereux et al. (1984) Nucleic Acids Research 12, p387-395). The PILEUP and BLAST algorithms can be used to infer homology or line up sequences (typically on their default settings), for example as described in Latched (1993) J. Mol. Evol 36:290-300; Latched et al. (1990) J. Mol. Biol. 215:403-10.
The JMJD2 polypeptide may be a polypeptide encoded by any naturally occurring
JMJD2 gene. The naturally occurring JMJD2 gene may comprise the sequence shown in SEQ ID NO: 1 or may be a variant of SEQ ID NO: 1. Such variants may include allelic variants and the deletion, modification or addition of single amino acids or groups of amino acids within the protein sequence, as long as the polypeptide retains lysyl methylase activity.
Amino acid substitutions of SEQ ID NO: 1 , or a fragment thereof, may be made, for example from about 1 , 2 or 3 to about 10, 20 or 30 substitutions. Conservative substitutions may be made, for example according to the following Table. Amino acids in the same block in the second column and preferably in the same line in the third column may be substituted for each other. ALIPHATIC Non-polar G A P
I L V
Polar-uncharged C S T M
N Q
Polar-charged D E
K R
AROMATIC H F W Y
Variant polypeptides within the scope of the invention may be generated by any suitable method, for example by gene shuffling techniques.
The present invention also includes use of active portions, fragments, derivatives and functional mimetic of the polypeptides of the invention. An "active portion" of a polypeptide means a peptide which is less than said full-length polypeptide, but which retains lysyl demethylase activity. An active fragment of JMJD2 may typically be identified by
monitoring for 2-OG dependent oxygenase activity. Such an active fragment may be included as part of a fusion protein.
The fragment may have up to about 60, 70, 80, 100, 150, 200, 300, 400, 500, 600, 700,
800, 900 or 1000 amino acids.
The fragment may comprise any region from about amino acid 1 to about 1064 of the amino acid sequence shown in SEQ ID NO: 1, such as from amino acid 2, 3, 4, 5 or about 10 to about amino acid 910, 920, 930, 940, 950, 960, 970, 980, 990, 1000, 1010, 1020, 1030, 1040, 1050, 1060. Other suitable fragments may readily be identified, for example by comparing the JMJD2 amino acid sequence to the amino acid sequence of one or more known 2-OG dependent oxygenase and identifying which regions are homologous to regions having catalytic activity. The regions having catalytic activity are typically included in the active fragments. Such fragments can be used to construct chimeric molecules.
Fragments of any JMJD2 polypeptide having at least about 60%, such as at least about
70%, 80%, 90%, 95% or 99% sequence identity to the amino acid sequence shown in SEQ ID NO: 1, which fragments have lysyl demethylase activity may also be used in an assay of the invention and are encompassed within the term "JMJD2 polypeptide" used herein. Step (b) requires a means for monitoring the release of Zn(II) ions. Any suitable means may be used. The means is typically a Zn(II) binding or Zn(II) -chelating agent. The means typically produces a detectable signal when bound to Zn(II) ions, the signal thereby produced being proportional to the amount of Zn(II) ions present. The signal is typically a fluorescent signal. In this case, the signal will typically be measured as Relative Fluorescence Units (RFU), which can be converted to a quantitative measure as is normal in the art by plotting a standard curve for a given Zn(II)-binding or chelating agent. The Zn(II) binding or Zn(II) - chelating agent is typically any Zn-specific chelator that fluoresces when bound to Zn(II) in solution. Suitable Zn(II)-chelating agents are commercially available, for example under the name FluoZin.
The method of the invention may further comprise the step of:
(c) determining whether or not the test compound changes the melting temperature (Tm) of the JMJD2 subfamily histone lysyl demethylase, wherein a reduction in Tm indicates that the compound is an inhibitor of a JMJD2 subfamily histone lysyl demethylase; and/or (d) comparing the amount of Zn(II) released in the presence and in the absence of said test compound, wherein a greater amount of Zn(II) released in the presence of the compound compared with the amount of Zn(II) released in the absence of the compound indicates that the compound is an inhibitor of a JMJD2 subfamily histone lysyl demethylase.
The change in Tm may be measured by any suitable method. Typically, Tm may be determined using differential scanning fluorimetry using methods as previously described in, for example, Niesen et al, Nat. Protocols 2007 p2212-2221). An inhibitor of the invention or an inhibitor identified by a method of the invention will typically reduce the Tm of a JMJD2 subfamily enzyme relative to the Tm in the absence of the inhibitor. An inhibitor of the invention or an inhibitor identified by a method of the invention will not increase the Tm of a JMJD2 subfamily enzyme relative to the Tm in the absence of the inhibitor.
The reduction in Tm produced by an inhibitor of the invention may be at least 5°C, 6°C, 7°C, 8°C, 9°C, 10°C, 11°C, 12°C, 13°C, 14°C, 15°C, 20°C, 25°C, 30°C or 35°C. The reduction in Tm is preferably at least 10°C
The amount of Zn(II) released may be monitored as described above. An inhibitor of the invention or an inhibitor identified by a method of the invention will typically increase the quantity of Zn(II) ions released relative to the amount of Zn(II) ions released in the absence of the inhibitor. The amount of Zn(II) ions released will typically be at least 2 fold, 3 fold, 4 fold, 5 fold, 10 fold, 20 fold or 100 fold greater than the amount of Zn(II) ions released in the absence of the inhibitor. The amount of Zn(II) ions released in the presence of an inhibitor of the invention or an inhibitor identified by a method of the invention will typically be at least 2μΜ when the inhibitor is present at a concentration of 5μΜ.
The IC50 of an inhibitor of the invention or an inhibitor identified by a method of the invention will typically be no greater than 200μΜ, preferably no greater than 100, 90, 80, 70, 60, 50, 40, 30, 20, 19, 18, 17, 16, 15, 14, 13, 12, 1 1, 10, 9, 8, 7, 6, 5, 4, 3, 2 or ΙμΜ. Most preferably, the IC50 of an inhibitor of the invention or an inhibitor identified by a method of the invention will be no greater than 30μΜ, no greater than 50 μΜ or no greater than 100 μΜ. ICso may be determined by any appropriate method. For example, IC50 may be determined by a MALDI-TOF mass spectrometry (MS) turnover assay, formaldehyde dehydrogenase (FDH) coupled inhibition assay, or assays monitoring the release of labelled (typically radioactively labelled) C02..
In a typical MALDI-TOF MS turnover assay a JMJD2 subfamily enzyme is incubated with 2-OG and Fe(II) in the presence and absence of a potential inhibitor at various concentrations. A suitable substrate for the JMJD2 subfamily enzyme is included. Suitable substrates may include the native sequence of a histone protein or a fragment thereof incorporating a H3 K9 tri or di methyl-lysine and H3 K36 tri or di methyl-lysine site upon which the JMJD2 subfamily enzyme will act. Suitable fragments incorporating such sites are typically 7, 8, 9, 10, 1 1 or 12 residues in length. An example of a suitable fragment is the 8- residue histone H3 fragment (ARKme3STGGK), which comprises a H3K9me3 site.
The sample is then analysed by MALDI-TOF MS. The relative intensities of different methylation states of the JMJD2 subfamily enzyme substrate are observed in the mass spectra and are used to calculate percentage demethylation. IC50 is calculated from the variation in percentage demethylation at different inhibitor concentrations.
In a typical FDH coupled assay, a JMJD2 subfamily enzyme and FDH are incubated with 2-OG and Fe(II) in the presence and absence of a potential inhibitor at various concentrations. A suitable substrate for the JMJD2 subfamily enzyme (as described above for the MALDI-TOF assay) is then included, together with NAD+ for the FDH reaction. The coupled reaction proceeds and yields formaldehyde from the JMJD2 subfamily enzyme reaction, which provides substrate for the FDH, and accordingly NADH is produced and may be monitored, typically by spectrophotometry. The relative amounts of NADH produced are used to calculate JMJD2 subfamily enzyme activity. IC50 is calculated from the variation in activity at different inhibitor concentrations. Test compounds suitable for use in the method of the invention include any compound which may be reasonably expected to promote the release of Zn(II) ions from a protein Zn(II) binding site. Such compounds typically comprise selenium and/or sulphur. Examples of suitable compounds include derivatives of l-(diethylthiocarbamoyldisulfanyl)-N,N-diethyl- methanethioamide (disulfiram) or 2-phenyl-l, 2-benzisoselenazol-3(2H)-one (ebselen). For instance, the test compound may be a disulfide of formula (I) as defined herein or a pharmaceutically acceptable salt thereof; an organoselenium compound of formula (II) as defined herein or a pharmaceutically acceptable salt thereof; a seleninic acid derivative of formula (III) as defined herein or a pharmaceutically acceptable salt thereof; a cyclic selenium compound of formula (IV) as defined herein or a pharmaceutically acceptable salt thereof; or a selenite salt.
The invention also provides compounds identified as inhibitors according to the method of the invention.
The invention also provides a method of identifying compounds which promote the release of Zn(II) ions from a JMJD2 subfamily enzyme comprising the steps of:
(a) contacting a subfamily JMJD2 histone lysyl demethylase with a test compound; and
(b) monitoring the release of Zn(II) ions from the JMJD2 subfamily histone lysyl demethylase.
Release of Zn(II) ions may be monitored according to any suitable method as described above. Any suitable JMJD2 subfamily enzyme may be used as set out above.
The invention also provides compounds which promote the release of Zn(II) ions from a JMJD2 subfamily enzyme for use in the inhibition of a JMJD2 subfamily enzyme, wherein the compound does not also inhibit a 2-OG dependent oxygenase which is not a JMJD2 subfamily enzyme. Such a use may typically be as part of an in vitro assay.
The invention also provides compounds which promote the release of Zn(II) ions from a JMJD2 subfamily enzyme for use in the treatment of cancer, wherein the compound does not also inhibit a 2-OG dependent oxygenase which is not a JMJD2 subfamily enzyme.
The JMJD2 subfamily enzymes are believed to have an important role in cell proliferation and oncogenesis. More specifically, the JMJD2 family has been implicated in esophogael squamous cell carcinoma and prostate cancer. Accordingly, the cancer to be treated by the compound of the invention may typically be esophogael cancer, prostate cancer and/or other forms of squamous cell carcinoma. The JMJD2 family has also been shown to interact with and modify gene expression activity of androgen receptors. The compound of the invention may therefore be used to treat any disease associated with androgen receptor malfunction. Prostate cancer is linked with abnormal androgen receptor activity.
The compound of the invention may typically be any compound which may be reasonably expected to promote the release of Zn(II) ions from a protein Zn(II) binding site. Such compounds typically comprise selenium and/or sulphur. Examples of suitable compounds include disulfiram, ebselen, and derivatives thereof.
In one embodiment the compound of the invention is a compound which comprises sulphur or selenium. In one embodiment, the compound is a compound which comprises sulfur. In another embodiment, the compound is a compound which comprises selenium. In another embodiment, the compound comprises both sulfur and selenium.
Typically, the compound of the invention is:
- a disulfide of formula (I)
Figure imgf000012_0001
wherein R1 and R2, which are the same or different, are independently selected from unsubstituted or substituted C1-20 alkyl, unsubstituted or substituted C2-2o alkenyl,
unsubstituted or substituted C2-20 alkynyl, unsubstituted or substituted C3-2o carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, cyano, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, and a group of formula (lb)
Figure imgf000012_0002
wherein Y is O or S, and wherein R12 and R13 are the same or different and are independently selected from hydrogen, unsubstituted or substituted C1-10 alkyl, unsubstituted or substituted C2-10 alkenyl, unsubstituted or substituted C2-io alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, carboxy, unsubstituted or substituted ester, and unsubstituted or substituted acyl, provided that R12 and R13 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group, wherein said C1-2o alkyl, C2-2o alkenyl, C2-20 alkynyl, C1-10 alkyl, C2-10 alkenyl and C2-10 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C 4 alkyl;
or a pharmaceutically acceptable salt thereof; or
- an organoselenium compound of formula II)
Figure imgf000013_0001
wherein
R is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3.2o carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted ^.20 alkyl, unsubstituted or substituted C2-20 alkenyl,
unsubstituted or substituted C2,20 alkynyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, or unsubstituted or substituted acyl, wherein said Ci-20 alkyl, C2.2o alkenyl and C2-20 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C1 -4 alkyl; and R21 is hydrogen, halo, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted Ci-2o alkyl, unsubstituted or substituted C2-20 alkenyl, unsubstituted or substituted C2-20 alkynyl, cyano, amino, hydroxyl, thiol,
unsubstituted or substituted Ci-10 alkylamino, unsubstituted or substituted di(Ci-10)alkylarnino, unsubstituted or substituted arylamino, unsubstituted or substituted diarylamino, unsubstituted or substituted arylalkylamino, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted acyloxy, unsubstituted or substituted Ci-io alkoxy, unsubstituted or substituted aryloxy, unsubstituted or substituted C1-10 alkylthio, unsubstituted or substituted arylthio, or -Se-R22, wherein R22 is as defined above for R20, wherein said C1-2o alkyl, C2-2o alkenyl and C2-20 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Ct-4 alkyl;
or a pharmaceutically acceptable salt thereof; or
- a seleninic acid derivative of formula (III)
Figure imgf000013_0002
wherein R is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted Cj.20 alkyl, unsubstituted or substituted C2-20 alkenyl,
unsubstituted or substituted C2-2o alkynyl, unsubstituted or substituted C3.2o carbocyclyl, unsubstituted or substituted C3.2o heterocyclyl, wherein said C1-20 alkyl, C2-20 alkenyl and C2-20 alkynyl groups are optionally interrupted by 0, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C 1-4 alkyl; and
R25 is hydrogen, unsubstituted or substituted C]-20 alkyl, unsubstituted or substituted C2-2o alkenyl, unsubstituted or substituted C2-20 alkynyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3.20 heterocyclyl, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido or -Se(0)R26, wherein R26 is as defined above for R24;
or a pharmaceutically acceptable salt thereof; or
- a cyclic selenium compound of formula (IV)
Figure imgf000014_0001
(IV)
wherein
Ar is an unsubstituted or substituted aryl or heteroaryl ring;
L1 is -C(O)- or unsubstituted or substituted C1-4 alkylene; and
X is N(R27), O, S, C(O) or C(R27)(R28)-, wherein R27 and R28, which are the same or different when both are present, are independently selected from hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted d-10 alkyl, unsubstituted or substituted C2-i0 alkenyl, unsubstituted or substituted C2-10 alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, cyano, amino, halo, nitro, hydroxyl, thiol, unsubstituted or substituted C1-10 alkylamino, unsubstituted or substituted di(Ci.10)alkylamino, unsubstituted or substituted arylamino, unsubstituted or substituted diarylamino, unsubstituted or substituted arylalkylamino, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted acyloxy, unsubstituted or substituted C1-10 alkoxy, unsubstituted or substituted aryloxy, unsubstituted or substituted CM0 alkylthio, and unsubstituted or substituted arylthio, wherein said Ci-10 alkyl, C2-i0 alkenyl and C2-10 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Cr4 alkyl; or a pharmaceutically acceptable salt thereof; or
- a selenite salt.
In one embodiment, the compound of the invention is a disulfide of formula (I). Typically, in this embodiment, R1 and R2, which are the same or different, are independently selected from unsubstituted or substituted C1- o alkyl, unsubstituted or substituted C2-2o alkenyl, unsubstituted or substituted C2-2o alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, cyano, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, and a group of formula (lb) as defined above. It will be understood that substituted C1-2o alkyl groups include alkaryl groups, as defined herein. R1 and/or R2 may for instance be a group of formula -Z-Ar, wherein Z is
Figure imgf000015_0001
alkylene and Ar is aryl or heteroaryl.
Typically, the disulfide of formula (I) is other than cystamine (compound 9). Usually, the disulfide of formula (I) is other than the disulfide form of glutathione (compound 5). Typically, the disulfide of formula (I) is other than bis(dibenzyltbiocarbamoyl) disulfide (compound lc).
1 2
In one embodiment, at least one of R and R is a group of formula (lb) as defined above. Typically, both R1 and R2, which are the same or different, are groups of formula (lb) as defined above.
Typically, Y, in the group of formula (lb) is S.
Typically, R12 and R13 in the group of formula (lb) are independently selected from hydrogen, unsubstituted or substituted CMO alkyl and unsubstituted or substituted aryl, provided that R12 and R13 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group.
The disulfide of formula I) may be a thiuram disulfide of formula (la)
Figure imgf000015_0002
wherein
R3, R4, R5 and R6 are the same or different and are independently selected from hydrogen, unsubstituted or substituted C1 -10 alkyl, unsubstituted or substituted C2.10 alkenyl, unsubstituted or substituted C2-i0 alkynyl, unsubstituted or substituted C3.20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, carboxy, unsubstituted or substituted ester, and unsubstituted or substituted acyl, wherein said C1-10 alkyl, C2.10 alkenyl and C2-io alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Ci-4 alkyl, provided that R3 and R4 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-2o heterocyclyl group or an unsubstituted or substituted heteroaryl group, and
provided that R5 and R6 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-20 heterocyclyl group or an- unsubstituted or substituted heteroaryl group.
Typically, the thiuram disulfide of formula (la) is other than
bis(dibenzylthiocarbamoyl) disulfide (compound lc).
Typically, R3 and R4 are the same or different and are independently selected from unsubstituted or substituted CMO alkyl and unsubstituted or substituted aryl, provided that R and R4 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group, and provided that R5 and R6 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3.2o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
The substituted C1-10 alkyl group may be an aryl-substituted Ci-10 alkyl group.
In one embodiment, R3 and R4 are the same and are selected from unsubstituted or substituted C1-10 alkyl and unsubstituted or substituted aryl.
Typically, R5 and R6 are the same or different and are independently selected from unsubstituted or substituted C1-10 alkyl and unsubstituted or substituted aryl, provided that R and R4 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group, and provided that R5 and R6 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-2o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
The substituted C1-10 alkyl group may be an aryl-substituted C1-10 alkyl group.
In one embodiment, R5 and R6 are the same and are selected from unsubstituted or substituted C1-10 alkyl and unsubstituted or substituted aryl.
In one embodiment, R3, R4, R5 and R6 are the same and are unsubstituted or substituted C1-10 alkyl or unsubstituted or substituted aryl. In one embodiment, R3 and R4 together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group.
Typically, in this embodiment, R3 and R4 together form a bidendate C1-10 alkylene group, which is substituted or unsubstituted and optionally interrupted by O, S, or N(R"), wherein R" is H, aryl or C1-4 alkyl. Usually, R3 and R4 together form a bidendate C o alkylene group which is unsubstituted, more typically an unsubstituted C3-6 alkylene group, for instance a -CH2CH2CH2CH2- (butylene) group.
Typically, R5 and R6 together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3.2o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
Typically, in this embodiment, R5 and R6 together form a bidendate C1-10 alkylene group, which is substituted or unsubstituted and optionally interrupted by O, S, or N(R"), wherein R" is H, aryl or Cr4 alkyl. Usually, R3 and R4 together form a bidendate Cj.io alkylene group which is unsubstituted, more typically an unsubstituted C -6 alkylene group, for instance a -CH2CH2CH2CH2- (butylene) group.
In one embodiment, the thiuram disulfide of formula (la) is
l-(diemyltWocarbamoyldismfanyl)-N,N-diemyl-memanemioarnide (compound la;
disulfiram) or bis(pyrrolidine-thiocarbarnoyl) disulfide (compound lb).
Disulfide compounds of formula (I) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance by methods which are known in the art or by routine modifications thereof. The syntheses of 1- (diemyltWocarbamoyldisulfanyl)-N,N-diethyl-methanetWoamide (compound la; disulfiram), bis(pyrrolidine-thiocarbamoyl) disulfide (compound lb) and bis(diben2ylthiocarbamoyl) disulfide (compound lc) are for instance described in the Example herein.
In one embodiment, the compound of the invention is an organoselenium compound of formula (II).
Typically, in this embodiment, R is unsubstituted or substituted aryl or heteroaryl; and R21 is hydrogen, halo, unsubstituted or substituted Ci.20 alkyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester,
9 9 9Π
unsubstituted or substituted acyl, or -Se-R , wherein R is as defined for R wherein said Ci-20 alkyl is optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C\-4 alkyl. Usually, R20 is unsubstituted or substituted aryl, for instance unsubstituted or substituted phenyl. R20 may for instance be unsubstituted phenyl.
Typically, R21 is hydrogen, halo, unsubstituted or substituted C1-10 alkyl, or -Se-R22, wherein R is as defined herein for R . R may for instance be unsubstituted or substituted aryl, for instance unsubstituted or substituted phenyl. R22 may for instance be unsubstituted phenyl.
In one embodiment, the organoselenium compound of formula (II) is Ph-Se-Se-Ph (compound 13), PhSeCl (compound 14), or PhSeH (compound 15).
Organoselenium compounds of formula (II) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance by methods which are known in the art or by routine modifications thereof.
In one embodiment, the compound of the invention is a seleninic acid derivative of formula (III).
Typically, in this embodiment, R24 is unsubstituted or substituted aryl, or unsubstituted or substituted C1-10 alkyl. Usually, R24 is unsubstituted or substituted aryl, for instance unsubstituted or substituted phenyl. R24 may for instance be unsubstituted phenyl.
Usually, R25 is hydrogen.
In one embodiment, the seleninic acid derivative of formula (III) is benzene seleninic acid, PhSe(0)OH (compound 12).
Seleninic acid derivatives of formula (III) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance by methods which are known in the art or by routine modifications thereof.
In one embodiment, the compound of the invention is a cyclic selenium compound of formula (IV).
Typically, in this embodiment, Ar is an unsubstituted or substituted aryl ring, for instance an unsubstituted or substituted phenyl ring. Alternatively, Ar may be an
unsubstituted aryl or heteroaryl ring. Usually, Ar is an unsubstituted aryl ring, for instance unsubstituted phenyl.
Typically, L1 is -C(O)- or unsubstituted or substituted C1-2 alkylene. Usually, L1 is -C(O)- or CH2 (methylene). More typically, L1 is -C(O)-.
X is typically N(R27), O, S, C(O) or -C(R27)(R28)-, wherein R27 and R28 are as defined above. Typically, when X is -C(R27)(R28)-, R27 and R28 are both hydrogen. Typically, when X is N(R ), R is as defined above. More typically, R is hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted Cno alkyl.
In one embodiment, X is N(R27) and R27 is as defined hereinbefore. More typically, however, R27 is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted Cno alkyl. In one embodiment, R27 is an unsubstituted or substituted aryl ring, for instance an unsubstituted or substituted phenyl ring. Alternatively, R may be an unsubstituted aryl or heteroaryl ring. Usually, R is an unsubstituted aryl ring, for instance unsubstituted phenyl. Thus, X in one embodiment is N(Ph).
Typically, Ar is unsubstituted phenyl and the cyclic selenium compound of formula (IV) is a compound of formula (I
Figure imgf000019_0001
wherein L1 and X are as defined hereinbefore.
Typically, L1 is -C(O)- or unsubstituted or substituted C1-2 alkylene. Usually, X is N(R27), wherein R27 is hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted C o alkyl. However, L1 and/or X may be as further defined herein.
In one embodiment, the cyclic selenium compound of formula (IV) or (IVa) is
Figure imgf000019_0002
(compound 16; ebselen).
Cyclic selenium compounds of formula (IV) may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance using synthesis methods which are known in the art or by routine modifications thereof.
In one embodiment, the compound of the invention is a selenite salt.
Typically, in this embodiment, the selenite salt is a selenite salt of formula (V)
[Xn+]P[Se03 21q (v) wherein
X is a cation having a charge n+ wherein n is a positive integer; and
p and q are positive integers wherein n multiplied by p is equal to 2q. X may for instance be a monocation, for instance an alkali metal cation such as Na+. In that case n is 1, p is 2 and q is 1. Alternatively, X may be a dication, for instance an alkaline earth metal cation such as Ca2+, in which case n is 2, and p and q are both 1.
Alternatively, X may be a trication, for instance a trivalent lanthanide or actinide or a trivalent group 13 cation such as Al3+, in which case n is 3, p is 2 and q is 3. In another embodiment, X may be a tetravalent cation, for instance a tetravalent lanthanide or actinide, for instance Ce4+, in which case n is 4, p is 1 and q is 2.
In one embodiment, the selenite salt is Na2Se03.
Such selenite salts are- commercially available and/or may be prepared by routine chemical synthetic methods using commercially available starting materials, for instance using synthesis methods which are known in the art or by routine modifications thereof.
In one embodiment, the compound of the invention is:
1 -(diemyltWocarbamoyldisulfanyl)-N,N-diemyl-methanethioamide (compound 1 a;
disulfiram), bis(pyrrolidine-thiocarbamoyl) disulfide (compound lb), Na2Se03 (compound 11), PhSeOOH (compound 12; benzene seleninic acid), PhSeSePh (compound 13), PhSeCl
(compound 14), PhSeH (compound 15), or:
Figure imgf000020_0001
(compound 16; ebselen).
Compound numbers refer to the numbering system used in Table 1 of the Example. As used herein, a C1-20 alkyl group is an unsubstituted or substituted, straight or branched chain saturated hydrocarbon radical. Typically it is C1-10 alkyl, for example methyl, ethyl, propyl, butyl, pentyl, hexyl, heptyl, octyl, nonyl or decyl, or C1-6 alkyl, for example methyl, ethyl, propyl, butyl, pentyl or hexyl, or C1-4 alkyl, for example methyl, ethyl, i-propyl, n-propyl, t-butyl, s-butyl or n-butyl. When an alkyl group is substituted it typically bears one or more (e.g. one, two, three or four) substituents selected from substituted or unsubstituted Ci-20 alkyl; substituted or unsubstituted aryl; substituted or unsubstituted aralkyl; cyano;
amino; Q-io alkylamino; di(Ci-i0)alkylamino; arylamino; diarylamino; arylalkylamino; nitro; amido; thioamido; acylamido; hydroxyl; keto; oxo; halo; haloalkl (e.g. -CF3); carboxy; ester; acyl; acyloxy; Ci-10 alkoxy; aryloxy; haloalkyl; sulfhydryl (i.e. thiol, -SH); C1-10 alkylthio; arylthio; -N=N-C1-2o alkyl, which C^o alkyl is unsubstituted or substituted; -N=N-aryl, which aryl is unsubstituted or substituted; -S(0)R*; -S(0)2R<.; -S(0)2ORe; -S(0)NR¾Rc; -
S(0)2N eRe; -0(CRe¾)NReR; -C(0)N¾¾; -C02(CR Re)CONRiR<:; -OC(0)NReRe; - RC(0)0¾; -ReC(0)NRe¾; -CRe(N-ORe); -N2 +; -CFH2; -CF2H; or -CF3; wherein Re is H, C1-6 alkyl, C1-6 carbocyclyl or aryl and if two or more Re groups are present these may be the same or different.
Examples of substituted atkyl groups include haloalkyl, hydroxyalkyl, aminoalkyl, alkoxyalkyl and alkaryl groups. The term alkaryl, as used herein, pertains to a C1-20 alkyl group in which at least one hydrogen atom (e.g., 1, 2, 3) has been replaced with an aryl group. Examples of such groups include, but are not limited to, ben2yl (phenylmethyl, PhCH2-), benzhydryl (Ph2CH-), trityl (triphenylmethyl, Ph3C-), phenethyl (phenylethyl, Ph-CH2CH2-), styryl (Ph-CH=CK-), cinnamyl (Ph-CH=CH-CH2-).
Typically a substituted C1-2o alkyl group carries 1, 2 or 3 substituents, for instance 1 or
2.
A C2-20 alkenyl group or moiety is a straight or branched group or moiety, which contains from 2 to 20 carbon atoms. One or more double bonds may be present in the alkenyl group or moiety, typically one double bond. A C2-20 alkenyl group or moiety is typically ethenyl or a C3-1o alkenyl group or moiety, i.e. a C2-i0 alkenyl group, more typically a C2-6 alkenyl group. A C3-10 alkenyl group or moiety is typically a C3-6 alkenyl group or moiety, for example allyl, propenyi, butenyl, pentenyl or hexenyl. A C2-4 alkenyl group or moiety is ethenyl, propenyi or butenyl. An alkenyl group may be unsubstituted or substituted by one to four (e.g. one, two, three or four) substituents, the substituents, unless otherwise specified, being selected from those listed above for Ci-2o alkyl groups. Where two or more substituents are present, these may be the same or different.
A C2-20 alkynyl group or moiety is a straight or branched group or moiety which, unless otherwise specified, contains from 2 to 20 carbon atoms. One or more triple bonds, and optionally one or more double bonds may be present in the alkynyl group or moiety, typically one triple bond. A C2-20 alkynyl group or moiety is typically ethynyl or a C3-10 alkynyl group or moiety, i.e. a C2-10 alkynyl group, more typically a C2-6 alkynyl group. A C3- io alkynyl group or moiety is typically a C3-6 alkynyl group or moiety, for example propynyl, butynyl, pentynyl or hexynyl. A C2-4 alkynyl group or moiety is ethynyl, propynyl or butynyl. An alkynyl group may be unsubstituted or substituted by one to four substituents (e.g. one, two, three or four), the substituents, unless otherwise specified, being selected from those listed above for C1-20 alkyl groups. Where two or more substituents are present, these may be the same or different.
An aryl ring is an unsubstituted or substituted aromatic ring of covalently linked carbon atoms. Typically, the aryl ring is a 5- or 6- membered aryl ring, examples of which include cyclopentadienyl (Cp) and phenyl. An aryl ring may be unsubstituted or substituted by, typically, one to four substituents (e.g. one, two, three or four), the substituents, unless otherwise specified, being selected from those listed above for C]-20 alkyl groups. Where two or more substituents are present, these may be the same or different.
A heteroaryl ring is an unsubstituted or substituted heteroaromatic ring of covalently linked atoms including one or more heteroatoms. The one or more heteroatoms are typically selected from nitrogen, phosphorus, silicon, oxygen and sulfur (more commonly from nitrogen, oxygen and sulfur). A heteroaryl ring is typically a 5- or 6- membered heteroaryl ring containing at least one heteroatom selected from nitrogen, phosphorus, silicon, oxygen and sulfur (more commonly selected from nitrogen, oxygen and sulfur). It may contain, for example, 1, 2 or 3 heteroatoms. Examples of heteroaryl rings include pyridine, pyrazine, pyrimidine, pyridazine, furan, thiofuran, pyrazole, pyrrole, oxazole, oxadiazole, isoxazole, thiadiazole, thiazole, isothiazole, imidazole and pyrazole. A heteroaryl ring may be unsubstituted or substituted by, typically, one to four substituents (e.g. one, two, three or four), the substituents, unless otherwise specified, being selected from those listed above for Ci-20 alkyl groups. Where two or more substituents are present, these may be the same or different.
A C3-2o carbocyclyl group is an unsubstituted or substituted monovalent moiety obtained by removing a hydrogen atom from an alicyclic ring atom of a carbocyclic ring of a carbocyclic compound, which moiety has from 3 to 20 carbon atoms (unless otherwise specified), including from 3 to 20 ring atoms. The carbocyclyl ring may be saturated or unsaturated. Thus, the term "carbocyclyl" includes the sub-classes cycloalkyl, cycloalkyenyl and cycloalkynyl. Preferably, each ring has from 5 to 7 ring atoms. Examples of groups of C3-2o carbocyclyl groups include C3-io carbocyclyl, C5-7 carbocyclyl and C5-6 carbocyclyl. When a C3-20 carbocyclyl group is substituted it typically bears one or more substituents
(typically one, two, three or four substituents) selected from those listed above for C1-20 alkyl groups.
Examples of C3-io carbocyclyl groups include, but are not limited to, those derived from saturated monocyclic hydrocarbon compounds:
cyclopropane (C3), cyclobutane (C4), cyclopentane (C5), cyclohexane (C6), cycloheptane (C7), methylcyclopropane (C4), dimethylcyclopropane (C5), methylcyclobutane (C5), dimethylcyclobutane (C6), methylcyclopentane (C6), dimethylcyclopentane (C7), methylcyclohexane (C7), dimethylcyclohexane (Cg), menthane (C10);
unsaturated monocyclic hydrocarbon compounds: cyclopropene (C3), cyclobutene (C4), cyclopentene (C5), cyclopentadiene (C5), cyclohexene (C6), cyclohexadiene (C6), methylcyclopropene (C ), dimethylcyclopropene (C5), methylcyclobutene (C5), dimethylcyclobutene (C6), methylcyclopentene (C6),
dimethylcyclopentene (C7), methylcyclohexene (C7), dimethylcyclohexene (C8);
saturated polycyclic hydrocarbon compounds:
thujane (Cio), carane (C10), pinane (C10), bornane (Cio), norcarane (C7), norpinane (C7), norbornane (C7), adamantane (Ci0), decalin (decahydronaphthalene) (C10); unsaturated polycyclic hydrocarbon compounds: camphene (C10), limonene (C10), pinene (Cio);
polycyclic hydrocarbon compounds having an aromatic ring:
indene (C9), indane (e.g., 2,3-dihydro-lH-indene) (C9), tetraline
(1,2,3,4-tetrahydronaphthalene) (C10), acenaphthene (C12), fluorene (Ci3), phenalene (C13), 5,5,8,8-tetramethyl tetraline (C14), acephenanthrene (C15), aceanthrene (C16),
cholanthrene (C20).
A C3-1o cycloalkyl group or moiety is a 3- to 10- membered unsubstituted or substituted group or moiety, typically a 3 -to 6-membered group or moiety, which may be a monocyclic ring or which may consist of two or more fused rings. Examples of C3-1o cycloalkyl groups or moieties include cyclopropane (C3), cyclobutane (C4), cyclopentane (C5), cyclohexane (C6), cycloheptane (C7), methylcyclopropane (C4), dimethylcyclopropane (C5), methylcyclobutane (C5), dimethylcyclobutane (C6), methylc)'clopentane (C6),
dimethylcyclopentane (C7), methyl cyclohexane (C7), dimethyl cyclohexane (C8), menthane (C10), thujane (C10), carane (C10), pinane (C]0), bornane (Cio), norcarane (C7), norpinane (C7), norbornane (C7), adamantane (Cio) and decalin (decahydronaphthalene) (C10).
A C3-20 heterocyclyl group is an unsubstituted or substituted monovalent, monocyclic, bicyclic or tricyclic moiety obtained by removing a hydrogen atom from a ring atom of a heterocyclic compound, which moiety has from 3 to 20 ring atoms (unless otherwise specified), of which from 1 to 10 are ring heteroatoms. Preferably, each ring has from 3 to 7 ring atoms, of which from 1 to 4 are ring heteroatoms. When a C3.20 heterocyclyl group is substituted it typically bears one or more substituents selected from Ci- alkyl which is unsubstituted, aryl (as defined herein), cyano, amino, Cj.io alkylamino, di(Ci-1o)alkylamino, arylamino, diarylamino, arylalkylamino, amido, thioamido, acylamido, hydroxyl, oxo, halo, haloalkyl (e.g. CF3), carboxy, ester, acyl, acyloxy, C1-2o alkoxy, aryloxy, haloalkyl, sulfonic acid, sulfhydryl (i.e. thiol, -SH), Ci-io alkylthio, arylthio, and sulfonyl. Typically a substituted C3-2o heterocyclyl group carries 1, 2 or 3 substituents, for instance 1 or 2. Examples of groups of heterocyclyl groups include C3.2o heterocyclyl, C5-20 heterocyclyl, C3-15 heterocyclyl, C5.15 heterocyclyl, C3-12 heterocyclyl, C5-12 heterocyclyl, C3.10 heterocyclyl, C5-10 heterocyclyl, C3-7 heterocyclyl, C5-7 heterocyclyl, and C -6 heterocyclyl.
Examples of monocyclic C3-2o heterocyclyl groups include, but are not limited to, those derived from:
Ni: aziridine (C3), azetidine (C4), pyrrolidine (tetrahydropyrrole) (C5), pyrroline (e.g., 3-pyrroline, 2,5-dihydropyrrole) (C5), 2H-pyrrole or 3H-pyrrole (isopyrrole, isoazole) (C5), piperidine (C6), dihydropyridine (C6), tetrahydropyridine (C6), azepine (C7);
Oj : oxirane (C3), oxetane (C4), oxolane (tetrahydrofuran) (C5), oxole (dihydrofuran) (C5), oxane (tetrahydropyran) (C6), dihydropyran (C6), pyran (C6), oxepin (C7);
Si: thiirane (C3), thietane (C ), thiolane (tetrahydrothiophene) (C5), thiane
(tetrahydrothiopyran) (C6), thiepane (C7);
02: dioxolane (C5), dioxane (C6), and dioxepane (C7);
03: trioxane (C6);
N2: imidazolidine (C5), pyrrolidine (diazolidine) (C5), imidazoline (C5), pyrazoline
(dihydropyrazole) (C5), piperazine (C6);
N1O1 : tetrahydrooxazole (C5), dihydrooxazole (C5), tetrahydroisoxazole (C5), dihydroisoxazole (C5), mo holine (C6), tetrahydrooxazine (C6), dihydrooxazine (C6), oxazine
(C6);
NiSi: thiazoline (C5), thiazolidine (C5), t iomo holine (C6);
N2Oi: oxadiazine (C6);
O1S1 : oxathiole (C5) and oxathiane (thioxane) (C6); and,
N1O1S1 : oxathiazine (C6).
Examples of C3.2o heterocyclyl groups which are also aryl groups are described below as heteroaryl groups.
An aryl group is a substituted or unsubstituted, monocyclic or bicyclic aromatic group which typically contains from 6 to 14 carbon atoms, preferably from 6 to 10 carbon atoms in the ring portion. Examples include phenyl, naphthyl, indenyl and indanyl groups. An aryl group is unsubstituted or substituted. When an aryl group as defined above is substituted it typically bears one or more substiruents selected from unsubstituted or substituted d-6 alkyl (to form an aralkyl group), aryl which is unsubstituted, cyano, amino, C1-10 alkylamino, di(Ci- 1o)alkylamino, arylamino, diarylamino, arylalkylamino, amido, thioamido, acylamido, hydroxyl, halo, haloalkyl (e.g. CF3), carboxy, ester, acyl, acyloxy, C1-2o alkoxy, aryloxy, haloalkyl, sulfhydryl (i.e. thiol, -SH), Ci-io lkylthio, arylthio, sulfonic acid and sulfonyl. Typically it carries 0, 1, 2 or 3 substituents. A substituted aryl group may be substituted in two positions with a single unsubstituted or substituted C1-6 alkylene group, or with a bidentate group represented by the formula -X-Ci-6 alkylene, or -X-C1-6 alkylene-X-, wherein X is selected from O, S and NR, and wherein R is H, aryl or Ci-6 alkyl. Thus a substituted aryl group may be an aryl group fused with a cycloalkyl group or with a heterocyclyl group.
The term aralkyl as used herein, pertains to an aryl group in which at least one hydrogen atom (e.g., 1, 2, 3) has been substituted with a C1-6 alkyl group. Examples of such groups include, but are not limited to, tolyl (from toluene), xylyl (from xylene), mesityl (from mesitylene), and cumenyl (or cumyl, from cumene), and duryl (from durene).
The ring atoms of an aryl group may include one or more heteroatoms, as in a heteroaryl group. Such an aryl group (a heteroaryl group) is a substituted or unsubstituted mono- or bicyclic heteroaromatic group which typically contains from 6 to 10 atoms in the ring portion including one or more heteroatoms. It is generally a 5- or 6-membered ring, or two fused rings each of which is the same or different and typically independently selected from a 5-membered ring and a 6-membered ring, containing at least one heteroatom selected from O, S, N, P, Se and Si. It may contain, for example, 1, 2 or 3 heteroatoms. Examples of heteroaryl groups include pyridyl, pyrazinyl, pyrimidinyl, pyridazinyl, furanyl, thienyl, pyrazolidinyl, pyrrolyl, oxazolyl, oxadiazolyl, isoxazolyl, thiadiazolyl, thiazolyl, isothiazolyl, imidazolyl, pyrazolyl, quinolyl and isoquinolyl. A heteroaryl group may be unsubstituted or substituted, for instance, as specified above for aryl. Typically it carries 0, 1 , 2 or 3 substituents.
A C1-10 alkylene group is an unsubstituted or substituted bidentate moiety obtained by removing two hydrogen atoms, either both from the same carbon atom, or one from each of two different carbon atoms, of a hydrocarbon compound having from 1 to 10 carbon atoms (unless otherwise specified), which may be aliphatic or alicyclic, and which may be saturated, partially unsaturated, or fully unsaturated. Thus, the term "alkylene" includes the sub-classes alkenylene, alkynylene, cycloalkylene, etc., discussed below. Typically it is C1-6 alkylene. Typically it is C1-4 alkylene, for example methylene, ethylene, i-propylene, n-propylene, t- butylene, s-butylene or n-butylene. It may also be pentylene, hexylene, heptylene, octylene and the various branched chain isomers thereof. An alkylene group may be unsubstituted or substituted, for instance, as specified above for alkyl. Typically a substituted alkylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
In this context, the prefixes (e.g., C1-4, C1-7, C1-10, C2-7, C3-7, etc.) denote the number of carbon atoms, or range of number of carbon atoms. For example, the term "C^alkylene," as used herein, pertains to an alkylene group having from 1 to 4 carbon atoms. Examples of groups of alkylene groups include C1-4 alkylene ("lower alkylene"), Ci-7 alkylene and Ci.10 alkylene.
Examples of linear saturated C1-7 alkylene groups include, but are not limited to, -(CH2)n- where n is an integer from 1 to 7, for example, -CH2- (methylene), -CH2CH2- (ethylene), -CH2CH2CH2- (propylene), and -CH2CH2CH2CH2- (butylene).
Examples of branched saturated C1-7 alkylene groups include, but are not limited to, -CH(CH3)-, -CH(CH3)CH2-, -CH(CH3)CH2CH2-, -CH(CH3)CH2CH2CH2-,
-CH2CH(CH3)CH2-, -CH2CH(CH3)CH2CH2-, -CH(CH2CH3)-, -CH(CH2CK3)CH2-, and -CH2CH(CH2CH3)CH2-.
Examples of linear partially unsaturated Ci-7 alkylene groups include, but is not limited to, -CH=CH- (vinylene), -CH=CH-CH2-, -CH2-CH=C¾-, -CH=CH-CH2-CH2-, -CH=CH-CH2-CH2-CH2-, -CH=CH-CH=CH-, -CH=CH-CH=CH-CH2-, -CH=CH-CH=CH- CH2-CH2-, -CH=CH-CH2-CH=CH-, and -CH=CH-CH2-CH2-CH=CH-.
Examples of branched partially unsaturated C1-7 alkylene groups include, but is not limited to, -C(CH3)=CH-, -C(CH3)=CH-CH2-, and -CH=CH-CH(CH3)-.
Examples of alicyclic saturated C1-7 alkylene groups include, but are not limited to, cyclopentylene (e.g., cyclopent-l,3-ylene), and cyclohexylene (e.g., cyclohex-l,4-ylene).
Examples of alicyclic partially unsaturated C1- alkylene groups include, but are not limited to, cyclopentenylene (e.g., 4-cyclopenten-l,3-ylene), cyclohexenylene (e.g.,
2-cyclohexen-l,4-ylene; 3-cyclohexen-l,2-ylene; 2,5-cyclohexadien-l,4-ylene). These are examples of C5-6 cycloalkylene groups.
C1-10 alkylene, Ci-20 alkyl, C2-20 alkenyl and C2-2o alkynyl groups as defined herein are either uninterrupted or interrupted by one or more heteroatoms or heterogroups, such as S, O or N(R") wherein R" is H, Ci-6 alkyl or aryl (typically phenyl), or by one or more arylene (typically phenylene) or heteroarylene groups. The phrase "optionally interrupted" as used herein thus refers to a C1-2o alkyl group or an alkylene group, as defined above, which is uninteaupted or which is interrupted between adjacent carbon atoms by a heteroatom such as oxygen or sulfur, by a heterogroup such as N(R") wherein R" is H, aryl or C[-C6 alkyl, or by an arylene or heteroarylene group.
For instance, a C1-2o alkyl group such as n-butyl may be interrupted by the heterogroup N(R") as follows: -CH2N(R")CH2CH2CH3, -CH2CH2N(R")CH2CH3, or
-CH2CH2CH2N(R")CH3. Similarly, an alkylene group such as n-butylene may be interrupted by the heterogroup N(R") as follows: -CH2N(R")CH2CH2CH2-, -CH2CH2N(R")CH2CH2-, or -CH2CH2CH2N(R")CH2-. Typically an interrupted group, for instance an interrupted C O alkylene, C1-20 alkyl, C2-2o alkenyl or C2-20 alkynyl group, is interrupted by 1, 2 or 3
heteroatoms or heterogroups or by 1 , 2 or 3 arylene (typically phenylene) groups. More typically, an interrupted group, for instance an interrupted C1-10 alkylene, Ci-20 alkyl, C2-20 alkenyl or C2.20 alkynyl group, is interrupted by 1 or 2 heteroatoms or heterogroups or by 1 or 2 arylene (typically phenylene) groups. For instance, a C1-2o alkyl group such as n-butyl may - be interrupted by 2 heterogroups N(R") as follows: -CH2N(R")CH2N(R")CH2CH3.
An arylene group is an unsubstituted or substituted bidentate moiety obtained by removing two hydrogen atoms, one from each of two different aromatic ring atoms of an aromatic compound, which moiety has from 5 to 14 ring atoms (unless otherwise specified). Typically, each ring has from 5 to 7 or from 5 to 6 ring atoms. An arylene group may be unsubstituted or substituted, for instance, as specified above for aryl. Typically a substituted arylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
A heteroarylene group is an unsubstituted or substituted bidentate moiety obtained by removing two hydrogen atoms, one from each of two different aromatic ring atoms of a hetero-aromatic compound, which moiety has from 5 to 14 ring atoms (unless otherwise specified). Typically, each ring has from 5 to 7 or from 5 to 6 ring atoms. A heteroarylene group may be unsubstituted or substituted, for instance, as specified above for aryl. Typically a substituted heteroarylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
In this context, the prefixes (e.g., C5-20, C6.20, C5- 14, C5- , Cs-6, etc.) denote the number of ring atoms, or range of number of ring atoms, whether carbon atoms or heteroatoms. For example, the term "C5- arylene," as used herein, pertains to an arylene group having 5 or 6 ring atoms. Examples of groups of arylene groups include Cs-2o arylene, C6-20 arylene, C5- 14 arylene, C6-14 arylene, C6-1o arylene, C5-12 arylene, Cs.jo arylene, C5-7 arylene, C5- arylene, C5 arylene, and C arylene.
The ring atoms may be all carbon atoms, as in "carboarylene groups" (e.g., C6.20 carboarylene, C6-i4 carboarylene or C6-i0 carboarylene).
Examples of C6-20 arylene groups which do not have ring heteroatoms (i.e., C6-20 carboarylene groups) include, but are not limited to, those derived from the compounds discussed above in regard to aryl groups, e.g. phenylene, and also include those derived from aryl groups which are bonded together, e.g. phenylene-phenylene (diphenylene) and
phenylene-phenylene-phenylene (triphenylene).
Alternatively, the ring atoms may include one or more heteroatoms, as in
"heteroarylene groups" (e.g., C5-]o heteroarylene). A heteroarylene group may be unsubstituted or substituted, for instance, as specified above for aryl. Typically a substituted heteroarylene group carries 1, 2 or 3 substituents, for instance 1 or 2.
Examples of heteroarylene groups include, but are not limited to, those derived from the compounds discussed above in regard to heteroaryl groups. Examples of heteroarylene groups include bidentate groups derived from pyridine, pyrazine, pyrimidine, pyridazine, furan, thiofuran, pyrazole, pyrrole, oxazole, oxadiazole, isoxazole, thiadiazole, thiazole, isothiazole, imidazole and pyrazole.
As used herein the terms oxo and keto represent a group of formula: =0
As used herein the term halo represents a group of formula: -X wherein X is a halogen atom. Typically X is F, CI, Br or I.
As used herein the term acyl represents a group of formula: -C(=0)R, wherein R is an acyl substituent, for example, a substituted or unsubstituted C1-20 alkyl group, a substituted or unsubstituted C3-2o heterocyclyl group, or a substituted or unsubstituted aryl group. Examples of acyl groups include, but are not limited to, -C(=0)CH3 (acetyl), -C(=0)CH2CH3
(propionyl), -C(=0)C(CH3)3 (t-butyryl), and -C(=0)Ph (benzoyl, phenone).
As used herein the term acyloxy (or reverse ester) represents a group of formula: -OC(=0)R, wherein R is an acyloxy substituent, for example, substituted or unsubstituted C1-20 alkyl group, a substituted or unsubstituted C3-20 heterocyclyl group, or a substituted or unsubstituted aryl group, typically a C1-6 alkyl group. Examples of acyloxy groups include, but are not limited to, -OC(=0)CH3 (acetoxy), -OC(=0)CH2CH3, -OC(=0)C(CH3)3,
-OC(=0)Ph, and -OC(=0)CH2Ph.
As used herein the term ester (or carboxylate, carboxylic acid ester or oxycarbonyl) represents a group of formula: -C(=0)OR, wherein R is an ester substituent, for example, a substituted or unsubstituted Ci.20 alkyl group, a substituted or unsubstituted C3-20 heterocyclyl group, or a substituted or unsubstituted aryl group (typically a phenyl group). Examples of ester groups include, but are not limited to, -C(=0)OCH3, -C(=0)OCH2CH3,
-C(=0)OC(CH3)3, and -C(=0)OPh.
As used herein the term amino represents a group of formula -N¾. The term CrC10 alkylamino represents a group of formula -NHR' wherein R' is a CMO alkyl group, preferably a Ci-6 alkyl group, as defined previously. The term di(C1-1o)alkylamino represents a group of formula -NR'R" wherein R' and R" are the same or different and represent unsubstituted or substituted C1-10 alkyl groups, preferably unsubstituted or substituted C1-6 alkyl groups, as defined previously. The term arylamino represents a group of formula -NHR' wherein R' is an aryl group, preferably a phenyl group, as defined previously. The term diarylamino represents a group of formula -NR'R" wherein R' and R" are the same or different and represent aryl groups, preferably phenyl groups, as defined previously. The term
arylalkylamino represents a group of formula -NR'R" wherein R' is a C1-10 alkyl group, preferably a C1-6 alkyl group, and R" is an aryl group, preferably a phenyl group.
As used herein the term amido represents a group of formula: -C(=0)NR R , wherein
R and R are independently selected from hydrogen, unsubstituted or substituted C1-10 alkyl, unsubstituted or substituted C2-10 alkenyl, unsubstituted or substituted C2.10 alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted aryl, and unsubstituted or substituted heteroaryl, provided that R' and R" may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-2o heterocyclyl group or an unsubstituted or substituted heteroaryl group. Examples of amido groups include, but are not limited to, -C(=0)NH2, -C(=0)NHCH3, -C(=0)N(CH3)2, -C(=0)NHCH2CH3, and -C(=0)N(CH2CH3)2, as well as amido groups in which R and R , together with the nitrogen atom to which they are attached, form a heterocyclic structure as in, for example, piperidinocarbonyl, morpholinocarbonyl, thiomorpholinocarbonyl, and piperazinocarbonyl.
As used herein the term thioamido represents a group of formula: -C(=S)NR R , wherein R and R are independently selected from hydrogen, unsubstituted or substituted d. 10 alkyl, unsubstituted or substituted C2-10 alkenyl, unsubstituted or substituted C2-10 alkynyl, unsubstituted or substituted C3.20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted aryl, and unsubstituted or substituted heteroaryl, provided that R' and R" may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-20 heterocyclyl group or an unsubstituted or substituted heteroaryl group. Examples of thioamido groups include, but are not limited to, -C(=S)NH2, -C(=S)NHCH3, -C(=S)N(C¾)2, -C(=S)NHCH2CH3, and -C(=S)N(CH2CH3)2, as well as thioamido groups in which R and R , together with the nitrogen atom to which they are attached, form a heterocyclic structure, for example a piperidino, morpholino, thiomorpholino or piperazino heterocyclic ring. For instance, R and R together may be (CH2)n, wherein n is 3 to 5, more typically 4 or 5, even more typically 4.
As used herein, the terms "carboxy", "carboxyl" and "carboxylic acid" each represent a group of the formula: -C(=0)OH, or -COOH. As would be understood by the skilled person, a carboxylic acid group (for instance, when employed in the present invention) can exist in protonated and deprotonated forms (for example, -C(=0)OH and -C(=0)0"), and in salt forms (for example, -C(=0)0"X+, wherein X+ is a monovalent cation). As used herein the term acylamido represents a group of formula: -NRxC(=0)Ry, wherein Rx is an amide substituent, for example, hydrogen, a C^oalkyl group, a C3-2o heterocyclyl group, an aryl group, preferably hydrogen or a C1-2o alk l group, and Ry is an acyl substituent, for example, a C1-20 alkyl group, a C3-20 heterocyclyl group, or an aryl group, preferably hydrogen or a C1-20 alkyl group. Examples of acylamide groups include, but are not limited to, -NHC(=0)CH3 , -NHC(=0)CH2CH3, -NHC(=0)Ph, -NHC(=0)C,5H3, and -NHC(=0)C9H19. Thus, a substituted C1-20 alkyl group may comprise an acylamido substituent defined by the formula -NHC(=:0)-C1.2o alkyl, such as -NHC(=0)C15H31 or
Figure imgf000030_0001
Rx and Ry may together form a cyclic structure, as in, for example, succinimidyl, maleimid l, and phthalimidyl:
Figure imgf000030_0002
succinimidyl maleimidyl phthalimidyl
A Ci-io alkylthio group is a said C1-10 alkyl group, preferably a C1-6 alkyl group, attached to a thio group. An arylthio group is an aryl group, preferably a phenyl group, attached to a thio group.
A Ci-20 alkoxy group is a said substituted or unsubstituted C1-2o alkyl group attached to an oxygen atom. A Ci-10 alkoxy group is a said substituted or unsubstituted Ci-io alkyl group attached to an oxygen atom. A C\s alkoxy group is a said substituted or unsubstituted C^ alkyl group attached to an oxygen atom. A C1-4 alkoxy group is a substituted or unsubstituted C alkyl group attached to an oxygen atom. Said Ci-20, CMO, C1-6 and C1-4 alkyl groups are optionally interrupted as defined herein. Examples of alkoxy groups include, -OMe
(methoxy), -OEt (ethoxy), -O(nPr) (n-propoxy), -O(iPr) (isopropoxy), -O(nBu) (n-butoxy), - O(sBu) (sec-butoxy), -O(iBu) (isobutoxy), and -0(tBu) (tert-butoxy). Further examples of Ci- 20 alkoxy groups are -0(Adamantyl), -0-CH2-Adamantyl and -0-CH2-CH2-Adamantyl. An aryloxy group is a substituted or unsubstituted aryl group, as defined herein, attached to an oxygen atom. An example of an aryloxy group is -OPh (phenoxy).
Unless otherwise specified, included in the above are the well known ionic, salt, solvate, and protected forms of these substituents. For example, a reference to carboxylic acid or carboxyl group (-COOH) also includes the anionic (carboxylate) form (-COO"), a salt or solvate thereof, as well as conventional protected forms. Similarly, a reference to an amino group includes the protonated form (-I^HR^2), a salt or solvate of the amino group, for example, a hydrochloride salt, as well as conventional protected forms of an amino group. Similarly, a reference to a hydroxyl group also includes the anionic form (-0"), a salt or solvate thereof, as well as conventional protected forms.
The compounds of formula (la) as defined herein therefore include forms in which one or both of the amino groups are protonated. Thus, the compounds of formula (la) include the following protonated form of those compounds:
Figure imgf000031_0001
wherein R3, R , R5 and R6 are as defined herein. Specific examples of such compounds of formula (la) include:
Figure imgf000031_0002
Certain compounds may exist in one or more particular geometric, optical, enantiomeric, diasteriomeric, epimeric, atropic, stereoisomeric, tautomeric, conformational, or anomeric forms, including but not limited to, cis- and trans-forms; E- and Z-forms; c-, t-, and r- forms; endo- and exo-forms; R-, S-, and meso-forms; D- and L-forms; d- and 1-forms; (+) and (-) forms; keto-, enol-, and enolate-forms; syn- and anti-forms; synclinal- and anticlinal- forms; a- and β-forms; axial and equatorial forms; boat-, chair-, twist-, envelope-, and halfchair-forms; and combinations thereof, hereinafter collectively referred to as "isomers" (or "isomeric forms").
Note that, except as discussed below for tautomeric forms, specifically excluded from the term "isomers," as used herein, are structural (or constitutional) isomers (i.e., isomers which differ in the connections between atoms rather than merely by the position of atoms in space). For example, a reference to a methoxy group, -OCH3, is not to be construed as a reference to its structural isomer, a hydroxymethyl group, -CH2OH. Similarly, a reference to ortho-chlorophenyl is not to be construed as a reference to its structural isomer, meta- chlorophenyl. However, a reference to a class of structures may well include structurally isomeric forms falling within that class (e.g., C1-7 alkyl includes n-propyl and iso-propyl; butyl includes n-, iso-, sec-, and tert-butyl; methoxyphenyl includes ortho-, meta-, and para- methoxyphenyl). The above exclusion does not pertain to tautomeric forms, for example, keto, enol, and enolate forms, as in, for example, the following tautomeric pairs: keto/enol (illustrated below), imine/enarnine, amide/imino alcohol, amidine/amidine, nitroso/oxime,
thioketone/enethiol, N-nitroso/hyroxyazo, and nitro/aci-nitro.
Figure imgf000032_0001
keto enol enolate
Note that specifically included in the term "isomer" are compounds with one or more isotopic substitutions. For example, H may be in any isotopic form, including 1H, 2H (D), and 3H (T); C may be in any isotopic form, including 12C, C, and 14C; O may be in any isotopic form, including 160 and 180; and the like.
Unless otherwise specified, a reference to a particular compound includes all such isomeric forms, including (wholly or partially) racemic and other mixtures thereof. Methods for the preparation (e.g., asymmetric synthesis) and separation (e.g., fractional crystallisation and chromatographic means) of such isomeric forms are either known in the art or are readily obtained by adapting known methods, in a known manner.
Unless otherwise specified, a reference to a particular compound also includes ionic, salt, solvate, protected forms and prodrugs thereof.
Examples of pharmaceutically acceptable salts of the compounds for use in accordance with the present invention include salts with inorganic acids such as hydrochloric acid, hydrobromic acid, hydroiodic acid, sulphuric acid, nitric acid and phosphoric acid; and organic acids such as methanesulfonic acid, benzenesulphonic acid, formic acid, acetic acid, trifluoroacetic acid, propionic acid, butyric acid, isobutyric acid, oxalic acid, malonic acid, succinic acid, fumaric acid, maleic acid, lactic acid, malic acid, tartaric acid, citric acid, ethanesulfonic acid, aspartic acid, benzoic acid and glutamic acid. Typically the salt is a hydrochloride, an acetate, a propionate, a benzoate, a butyrate or an isobutyrate. Examples of pharmaceutically acceptable salts are discussed in Berge et al., 1977, "Pharmaceutically Acceptable Salts," J. Pharm. Sci., Vol. 66, pp. 1-19.
A prodrug of a compound for use in accordance with the present invention is a compound which, when metabolised (e.g., in vivo), yields the desired active compound. Typically, the prodrug is inactive, or less active than the active compound, but may provide advantageous handling, administration, or metabolic properties. The compound of the present invention can be in the free form or the salt form. The compound may also be in prodrug form. The prodrug can itself be in the free form or the salt form.
In another aspect, the present invention provides a method of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase, said method comprising:
(a) identifying an inhibitor by a method according to the invention,
(b) contacting a sample comprising at least one JMJD2 subfamily histone lysyl demethylase and at least one 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase with said inhibitor.
In this aspect of the invention, the method may use as an inhibitor any compound of the invention as described above. The method may typically be used in an in vitro assay.
In another aspect, the present invention provides compositions and formulations comprising the compounds of the invention. For example, the invention provides a pharmaceutical composition comprising one or more compounds of the invention, such as one or more compounds identified by a screening method of the invention, formulated together with a pharmaceutically acceptable carrier.
As used herein, "pharmaceutically acceptable carrier" includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like that are physiologically compatible. Preferably, the carrier is suitable for parenteral, e.g. intravenous, intramuscular or subcutaneous administration (e.g., by injection or infusion). Depending on the route of administration, the modulator may be coated in a material to protect the compound from the action of acids and other natural conditions that may inactivate the compound.
The pharmaceutical compounds of the invention may include one or more
pharmaceutically acceptable salts. A "pharmaceutically acceptable salt" refers to a salt that retains the desired biological activity of the parent compound and does not impart any undesired toxicological effects (see e.g., Berge, S.M., et al. (1977) J. Pharm. Sci. 66:1-19). Examples of such salts include acid addition salts and base addition salts.
Preferred pharmaceutically acceptable carriers comprise aqueous carriers or diluents.
Examples of suitable aqueous carriers that may be employed in the pharmaceutical compositions of the invention include water, buffered water and saline. Examples of other carriers include ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate. Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such as mannitol, sorbitol, or sodium chloride in the composition.
A pharmaceutical composition of the invention also may include a pharmaceutically acceptable anti-oxidant. These compositions may also contain adjuvants such as
preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of presence of microorganisms may be ensured both by sterilization procedures, supra, and by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like into the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents which delay absorption such as aluminum monostearate and gelatin.
Therapeutic compositions typically must be sterile and stable under the conditions of manufacture and storage. The composition can be formulated as a solution, microemulsion, liposome, or other ordered structure suitable to high drug concentration.
Sterile injectable solutions can be prepared by incorporating the active compound in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by sterilization microfiltration. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle that contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum drying and freeze-drying (lyophilization) that yield a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
Pharmaceutical compositions of the invention may comprise additional active ingredients as well as a modulator of the invention. As mentioned above, compositions of the invention may comprise one or more compounds of the invention. They may also comprise additional therapeutic or prophylactic agents. For example, where a pharmaceutical composition of the invention is intended for use in the treatment of a bleeding disorder, it may additionally comprise one or more agents intended to reduce the symptoms of the bleeding disorder. For example, the composition may comprise one or more clotting factors. The composition may comprise one or more other components intended to improve the condition of the patient. For example, where the composition is intended for use in the treatment of patients suffering from unwanted bleeding such as patients undergoing surgery or patients suffering from trauma, the composition may comprise one or more analgesic, anaesthetic, immunosuppressant or anti-inflammatory agents.
A composition of the invention may be used in the treatment of cancer, for example esophogael cancer, prostate cancer and/or other forms of squamous cell carcinoma. The JMJD2 family has also been shown to interact with and modify gene expression activity of androgen receptors. The composition of the invention may therefore be used to treat any disease associated with androgen receptor malfunction. Prostate cancer is linked with abnormal androgen receptor activity.
Also within the scope of the present invention are kits comprising compounds or compositions of the invention and instructions for use. The kit may further contain one ore more additional reagents, such as an additional therapeutic or prophylactic agent as discussed above. The invention also comprises kits for carrying out a method according to the invention, which will typically comprise one or more reagents including a Zn(II)-binding or chelating agent and instructions for use.
Example
Test compounds
Test compounds la - 16 in Table were identified by the Inventors as compounds with the potential to promote the release of Zn(II) ions from JMJD2 subfamily members and are used in the subsequent experiments. Compound 17 is pyridine-2,4-dicarbox}4ic acid (2,4- PDCA), which is a known Fe(II) -chelating competitive inhibitor of 2-oxoglutarate dependent oxygenases. 2,4-PDCA is known to operate by binding to the active site.
Table 1 Structure
As-SYNHR2
s
Test compound la R = Et
Test compound lb R2 = (CH2)4
Test compound lc R = CH2Ph
Test compound 2 " N SNa
Test compound 3
Figure imgf000036_0001
Test compound 4 glutathione (thiol form)
Test compound 5
Test compound 6
Test compound 7
Figure imgf000036_0002
SH
Test compound 8 Η,Ν '
Test compound 9 Η,Ν '
Test compound 10 PhSNa
Test compound 11 Na2Se03
Test compound 12 PhSeOOH
Test compound 13 PhSeSePh
Test compound 14 PhSeCl
Test compound 15 PhSeH
Test compound 16
Figure imgf000036_0003
Compound 17 pyridine-2,4-dicarboxylic acid
Test compound la is also known as l-(diethylthiocarbamoyldisulfanyl)-N,N-diethyl- methanethioamide or disulfiram. Test compound 16 is also known as 2-phenyl-l, 2- benzisoselenazol-3(2H)-one or ebselen. Synthesis of selected test compounds
Synthesis ofbis(pyrrolidine~thiocarbamoyl) disulfide (compound lb)
Prepared according to a reported procedure (Yin et al, Polyhedron 2008; p663-670). m.p. 119-124 °C; IR vmax ( Br): 2870, 1432, 1151, 954 cm'1, H NMR (400 MHz, CDC13): δ 2.02 (app. quin, J=7.0 Hz, 2H), 2.16 (app. quin, J=7.0 Hz, 2H), 3.97 (app. q, J=7.0 Hz, 4H) ppm; I3C NMR (100 MHz, CDC13): δ 24.2 (CH2), 26.5 (CH2), 50.9 (CH2), 56.9 (CH2), 189.1 (CS) ppm; HRMS (ESf): calcd for C10H16N2NaS4 (M+Na+), 315.0089; found, 315.0085; Elemental analysis: Calcd. for Ci0Hi6N2S4: C 41.06, H 5.51, N 9.58; found, C 41.11, H 5.63, N 9.64.
Synthesis ofbis(dibenzylthiocarbamoyl) disulfide (compound lc)
Prepared according to a reported procedure (Yin et al, Polyhedron 2008; p663-670). m.p. 130-131 °C; IR vmax (KBr): 2905, 1452, 1231, 921, 696 cm"1, !H NMR (400 MHz, CDCI3): δ ppm 5.20 (br. s., 4 H, G¾), 5.38 (br. s., 4 H, CH2), 6.86 - 7.73 (m, 20 H, ArCH) ppm; 13C NMR (100 MHz, CDCI3): δ ppm 54.9 ( H2), 59.0 ( H2.), 127.5 (ArCH), 127.9 (ArCH), 128.3 (ArCH), 128.9 (ArCH), 129.1 (ArCH), 134.2 (ArCH), 134.9 (ArCH), 196.3 (C=S) ppm; HRMS (ESI+): calcd for C30H28N2NaS4 (M+Na+), 567.1028; found, 567.1028; Elemental analysis: Calcd. for C30H28N2S4: C 66.14, H 5.18, N 5.14; found: C 66.18, H 5.09, N 5.18.
Synthesis of sodium diethylcarbamodithioate (compound 2)
Prepared according to a reported procedure (Yin et al, Polyhedron 2008; p663-670). m.p. 80-84 °C; IR vmax (KBr): 2978, 2074, 1672, 1615, 1476 cm'1, 1H NMR (400 MHz, DMSC ¾): δ 1.08 (t, J=7.0 Hz, 6H), 3.97 (q, J=7.0 Hz, 4H) ppm; 13C NMR (100 MHz, DMSO-i¾): δ 12.6 (CH3), 46.1 (CH2), 212.0 (CS) ppm; Elemental analysis: Calcd. for C5H10NnaS2: C 35.07; H 5.89; N 8.18; found, C 35.18; H 5.88; N 8.12.
Synthesis of octane- 1,8-dithiol diacetate (compound 7)
Acetic anhydride (0.64 ml, 6.72 mmol) was added dropwise to a solution of 1 ,8- octanedithiol (0.31 ml, 1.68 mmol), triethylamine (1.17 ml 8.40 mmol) and DMAP (20 mg, 0.17 mmol) in dry DCM (10 ml) at room temperature under an atmosphere of nitrogen. The mixture was stirred for 4 h before the addition of sodium hydrogen carbonate solution (15 ml sat. aq.). The layers were separated and the aqueous phase extracted with DCM (2 10 ml). The combined organic extracts were washed with water (30 ml) and brine (30 ml) before being dried over MgS0 and concentrated in vacuo to give an off-white solid (0.58 g). The crude product was purified by flash chromatography eluting with 1-10% Et20/petrol to give diacetate 7 as a white solid (0.43 g, 98%); Rf = 0.59 (4% Et20/petroI); mp 37-38 °C; vmax (KBr): 2923 (CH), 2854 (CH), 1687 (CO) cm'1; δΗ (400 MHz, CDC13) 1.29-1.37 (8H, m, 3- ¾, 4-H2, 5-H2 and 6-H2), 1.56 (4H, br. quint., J 7.5, 2-¾ and 7-¾), 2.33 (6H, s, 2 -OAc), 2.86 (4H, t, J7.5, 1-H2 and 8-H2); 5C (100 MHz, CDC13) 28.7 (CH2), 28.9 (CH2), 29.1 (CH2), 29.4 (CH2), 30.6 (CH3), 196.1
Figure imgf000038_0001
(ESI) 285 ([MNa]+, 100%), 263 ([MH]+, 50%).
Methods
Methods for MALDI-TOF MS turnover assay
Assay as reported in Rose et al; J Med Chem 2008, p7053-6.
Expression and purification of JMJD2A and PHD2 were according to standard methods in the art (See, for example, methods reported in Ng et al, Nature 2008 p87-91 and Chowdhury et al, Structure 2009. p981-9). JMJD2A, disodium 2-OG (2-oxoglutarate), ascorbic acid and [ARK(me3)STGGK-NH2] peptide solutions were made up in 50 mM HEPES buffer, pH 7.5. Fe2+ solution was prepared from (NH4)2Fe(S04)2 dissolved in 20 mM HC1 to make 400 mM stock solution, which was then diluted to the final concentration using MilliQ water.
Together, these were incubated with inhibitor (small molecules were dissolved in DMSO, final in-assay volume was always 5% of total assay mix) for 30 min at 37 °C, before 1 :1 quenching with methanol. When DMSO was present in the sample, methanol quenching was followed by addition of four volumes of 20 mM triammonium citrate. 1 of the diluted assay mixture was then mixed with 1 of recrystallized a-Cyano-4-hydroxycinnamic acid (CHCA, Laser BioLabs) and spotted onto the MALDI-TOF-MS plate before analysis. Preincubation experiments were carried out with JMJD2A, Fe2+, ascorbate and test inhibitor pre- incubated for 15 min at 37°C, prior to the addition of peptide and 2-OG. Relative proportions of a particular peptide species (i.e. trimethylated, dimethylated or monomethylated peptide) were calculated by taking the ratio of one methylation state's peak intensity in the mass spectrum to the sum of all three methylation states' peak intensities. %me3 = 100 x ^
Percentage demethylation at varied inhibitor concentrations was then used to calculate IC50S for inhibitors. Methods for Zn ejection assay
A Novostar spectrophotometer (BMG Labtechnologies) was used for measurements of fluorescence intensity of a Zn-specific fluorophore. In this case, FluoZin™-3 (Invitrogen) was used. Before each experiment, a calibration curve for the fluorophore (between 0-2 μΜ Zn2+) was obtained with varied concentrations of Zn2+ dissolved in MilliQ water. For assays, lmM solution of FluoZin™-3 was prepared in 50 mM HEPES buffer, pH 7.5, and then diluted in the same buffer to 10 μΜ stock solution. 10 μϋ, of the stock solution was pre-mixed with 10 μΐ, of 20 μΜ enzyme and 30 yL buffer to make the enzyme mix. A solution of compound in DMSO (5
Figure imgf000039_0001
was mixed with 45 )iL buffer. The compound solution was then mixed with the enzyme-fluorophore solution to give a total volume of 100 μΐ,, with final concentrations of FluoZin™-3, enzyme and DMSO of 1 μΜ, 2 μΜ and 5%, respectively. Mixing of the enzyme mix and the Zn-ejector solution took place immediately before the plate was inserted into the spectrophotometer for the first reading. The assay plate was shaken automatically for 5 seconds after each reading. Readings were taken for 90 cycles at a rate of 20 seconds per cycle.
Methods for non-denaturing ESI-MS binding assay
JMJD2A was desalted using a Bio-Spin 6 Column (Bio-Rad, Hemel Hempstead, UK) in 300 mM ammonium acetate (pH 7.5). Fe2+ solution was prepared as described above. The protein (final concentration 15 μΜ) was mixed with 1 eq of Fe2+ and 10 eq of inhibitor and incubated for 20 minutes at room temperature prior to ESI-MS analysis. Data were acquired on a Q-TOF mass spectrometer (Q-TOF micro, Micromass, Altrincham, UK) interfaced with a Nanomate (Advion Biosciences, Ithaca, NY, USA) with a chip voltage of 1.70 kV and a delivery pressure 0.25 psi (1 psi = 6.81 kPa). The sample cone voltage was either 80 V or 200 V with a source temperature of 40 °C and with an acquisition/scan time of lOs/l s. Calibration and sample acquisition were performed in the positive ion mode in the range of 500-5,000 mlz. The pressure at the interface between the atmospheric source and the high vacuum region was fixed at 6.60 mbar. Data were processed with MASSLYNX 4.0 (Waters). Methods for Differential Scanning Fluorimetry
Method as reported in Niesen et al, Nat. Protocols 2007, p2212-2221. DSF was used to determine Tm values for JMJD2A in the presence of small molecule Zn ejectors. It was performed using MiniOpticon™ Real-Time PCR Detection System (Bio-Rad). SYPRO orange (Invitrogen) dye was used for unspecifing binding to hydrophobic residues and its increase in fluorescence monitored as a function of time. For measurements of the effect of small molecules on the stability of proteins, compounds were dissolved to appropriate concentration in DMSO, such that the final volume of DMSO in a sample was 2.5 μΐ, (5%, v/v); 2.5 μΐ compound in DMSO, 10
Figure imgf000040_0001
of 20 μΜ protein, 10 of 5x SYPRO orange (diluted 1 : 1000 in 50 mM HEPES buffer from the stock solution in DMSO supplied) and 27.5 μΐ, buffer were mixed on ice. The chamber was cooled to 4 °C before inserting the sample plate and the readings of fluorescence were taken between 4-95 °C, increasing the
temperature linearly for 30 minutes. FAM (492 nm) and ROX (610 nm) filters were used for excitation and emission, respectively. Software automatically performed global minimum subtraction. The Tm is calculated using the Boltzmann equation y = LL + "^- , where LL
1 + e 0
and UL are values of minimum and maximum intensities and a corresponds to the slope of the curve within lm. All measurements were performed in triplicate.
Results
Test compounds la - 16 were screened for inhibition of JMJD2A using the MALDI-TOF MS turnover assay. The tested compounds as set out in Table 1 include disulfiram analogues (lb-2), as well as compounds with carbamothioate (3), thiol (4, 8), disulfide (5, 9), thioanhydride (6), thioester (7), and phenyl sulfhydryl (10) functional groups. A variety of selenium derivatives (1 1-16), including ebselen 16, which has been tested clinically for treatment of acute ischaemic stroke. IC50 values were determined and were as follows (values in μΜ):
Test compound la = 15.3, lb = 3.3, lO lOOO, 2 > 1000, 3 > 1000, 4 > 1000, 5 > 1000, 6 > 1000, 7 > 1000, 8 > 1000, 9 = 233, 10 > 1000, 1 1 > 300, 12 = 9.2, 13 > 1000, 14 = 26.1 , 15 > 300, 16 = 10.6. Compound 17 = 1.4.
The thioester, thioanhydride, carbamothioate and phenyl sulfhydryl -containing compounds (3, 6, 7, 10) were inactive (at 1 mM) as inhibitors. However, disulfiram (la) inhibited JMJD2A with IC50 = 15.3 μΜ. Of the three disulfiram analogues (lb, lc, 2), only that with pyrrolidinyl substituents (lb) inhibited, and was found to be more potent than disulfiram, whilst the dibenzyl derivative (lc) did not inhibit JMJD2A. Sodium
diethylthiocarbamate (2), a reduced form of disulfiram, also did not inhibit. Cystamine (9), a biologically relevant disulfide cysteine derivative, also inhibited JMJD2A in the high- micromolar range. However, its reduced analogue, cysteamine (8), did not inhibit, suggesting that the disulfide moiety is necessary for inhibition. Glutathione (GSH) was inactive in both reduced (4) and oxidized (5) forms. Because the concentration of GSH in a cell is 0.1-10 mM, it is perhaps unsurprising that it does not inhibit histone demethylases. Of the selenium derivatives tested, compounds 12, 14 and 16 were identified as inhibitors of JMJD2A, with IC5o values of 9.2 μΜ, 26.1 μΜ and 10.6 μΜ respectively.
Having shown that sulfur- and selenium-containing Zn-ejectors inhibit JMJD2A, the spectrophotometric Zn-ejection assay was used to investigate the mechanism of inhibition by detecting ejected Zn(II) ions. The amount of Zn(II) released from JMJD2A upon inhibitor treatment was determined by measuring the increase in fluorescence of the Zn(II)-chelating fluorophore (Figure 4). Of the sulfiir-containing compounds (la-10), only disulfiram (la) and its pyrrolidine analogue (lb) led to Zn-ejection, as monitored by an increase in fluorescence. In agreement with the catalytic assay results, lc and 2 showed no Zn-ejection. Cysteamine (9), despite inhibiting JMJD2A (Table 1), showed no Zn-ejection, suggesting it inhibits via a different mechanism.
All the selem'um-containing compounds tested (11-16) caused varying levels of Zn- ejection. Consistent with the inhibition assay results, benzene seleninic acid (12) and ebselen (16) were the most potent Zn-ejectors (Figure 4). In contrast, pyridine-2,4-dicarboxylic acid (2,4-PDCA; compound 17, a potent JMJD2A inhibitor (IC50 1.4 μΜ) that binds to the Fe(II) in the active site, did not eject Zn(II). Titrations of compounds lb and 16 against JMJD2A in the presence of the Zn(II)-chelating fluorophore demonstrated dose-dependent Zn-ejection for both compounds (Figure 2), at rates comparable with the rates of JMJD2A inactivation as measured by the catalytic turnover assay (Figure 5).
Non-denaturing electrospray ionization mass spectrometry (ESI-MS) was then used to further investigate the mechanism of inhibition (Figure 3). Mass spectra of JMJD2A (Fig. 3.(I)-(V)) incubated with disulfiram la showed covalent modification of JMJD2A with half of one disulfiram molecule, concomitant with loss of Zn(II) (Fig. 3.(11)). When JMJD2A was incubated with both disulfiram (la) and 2,4-PDCA (17), binding of both 17 and half of la was observed under mild ionisation conditions (80V sample cone voltage, Fig. 3.(IV)), together with loss of Zn(II); however, at higher sample cone voltage (200V) only the binding of disulfiram was retained, indicating covalent modification (Fig. 3.(V)). These data indicate that la and 17 inhibit by different mechanisms, la and 16 probably inhibit JMJD2A by
mechanisms related to that proposed by Loo et al, J Med Chem 1996, p4313-20 for the inhibition of aldehyde dehydrogenase by disulfiram (Figure 6) and by Jacob et al. Biochem Biophys Res Commun 1998, p569-73 for Zn-ejection from metallothionein by ebselen:
disulfiram forms a disulfide bond with one of the Zn-binding Cys residues, causing ejection of Zn(II). A related mechanism operates in the ejection of Zn(II) from p300 by
epidithioketopiperazines (ETPs) (Cook, Hilton, Mecinovic, Motherwell, Figg and Schofield; J Biol Chem 2009 July 9).
Differential scaruiing fluorimetry (DSF) was then used to determine the effect of Zn- ejectors on the structural stability of JMJD2A, as indicated by changes in the melting temperature (Tm). Based on structural analysis, Zn-ejection was expected to destabilise the JmjC fold, whereas the Fe(II)-chelating competitive inhibitor 17, which binds to the active site, was expected to stabilise the protein and lead to an increase in Tm. The Tm values were as follows:
Tm of JMJD2A with no compounds added = 47.4 ± 0.7°C. Tm with each tested compound (in °C): la = 32.0±1.6, lb = 29.9±0.4, 4 = 41.3±0.9, 12 = 27.8±0.6, 16 = 23.4±1.3, Tm with compound 17 = 48.9±2.0°C.
These values indicate that JMJD2A is destabilised by Zn-ejectors (la, lb, 12, 16) and that the extent of destabilisation parallels their inhibitory potency. 2,4-PDCA 17, (used at 100 μΜ) led to an increase in Tm, consistent with the hypothesis that the mechanism of inhibition by Zn-ejectors is different from that of previously reported Fe(II)-binding JMJD2A inhibitors (such as compound 17).
Finally, test compounds lb and 16 were tested for inhibition of the related 2-OG dependent oxygenase, prolyl hydroxylase domain 2 (PHD2), in the MALDI-TOF MS turnover assay. Neither test compound inhibited demonstrating that Zn(II) ejection is a viable method for obtaining selective inhibition of JMJD2 subfamily enzymes over other 2-OG dependent oxygenases. Conclusions
The above results demonstrate that Zn(II) removal can achieve selective inhibition of the JMJD2 subfamily histone demethylases over related 2-OG dependent oxygenases, specifically those which lack a Zn(II) binding site. This work also suggests that some of the cellular effects of Zn-ejecting compounds such as disulfiram and ebselen may be mediated via JMJD2 inhibition. Importantly, it has also demonstrated the potential for inhibiting 20G- dependent oxygenases by methods that do not involve Fe(II) chelators, thereby avoiding the potential side-effects associated with Fe chelation-based therapies.

Claims

1. A method of identifying an inhibitor of a JMJD2 subfamily histone lysyl demethylase, said method comprising the steps of:
(a) contacting a JMJD2 subfamily histone lysyl demethylase with a test compound; and
(b) monitoring the release of Zn(II) ions from the JMJD2 subfamily histone lysyl demethylase, wherein the release of Zn(II) ions indicates that the compound is an inhibitor of a JMJD2 subfamily histone lysyl demethylase.
2. A method according to claim 1 further comprising the step of:
(c) detenruning whether or not the test compound changes the melting temperature (Tm) of the JMJD2 subfamily histone lysyl demethylase, wherein a reduction in Tm indicates that the compound is an inhibitor of a JMJD2 subfamily histone lysyl demethylase; and/or (d) comparing the amount of Zn(II) released in the presence and in the absence of said test compound, wherein a greater amount of Zn(II) released in the presence of the compound compared with the amount of Zn(II) released in the absence of the compound indicates that the compound is an inhibitor of a JMJD2 subfamily histone lysyl demethylase.
3. A method according to claim 1 or 2 wherein the release of Zn(II) ions is monitored using a Zn(II) binding agent.
4. A method according to claim 3 wherein the Zn(II) binding agent produces a detectable signal when bound to Zn(II), optionally wherein said signal is a fluorescent signal.
5. A method according to any one of the preceding claims wherein the JMJD2 subfamily histone lysyl demethylase is JMJD2A.
6. A method according to any one of the preceding claims wherein the test compound comprises sulphur and/or selenium.
7. A method according to claim 6 wherein the test compound is a derivative of 1- (diemylthiocarbamoyldisulfanyl)-N,N-diethyl-methanethioamide (disulfiram) or 2-phenyl-l, 2-benzisoselenazol-3(2H)-one (ebselen).
8. A compound identified as a JMJD2 subfamily histone lysyl demethylase inhibitor by a method according to any one of the preceding claims.
9. A compound according to claim 8 which does not inhibit a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
10. A compound which promotes the release of Zn(II) ions from a JMJD2 subfamily histone lysyl demethylase for use in the inhibition of a JMJD2-subfamily histone lysyl demethylase, wherein the compound does not inhibit a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
11. A compound which promotes the release of Zn(II) ions from a JMJD2 subfamily histone lysyl demethylase for use in the treatment of cancer, wherein the compound does not inhibit a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase.
12. A compound according to claim 11 wherein said cancer is squamous cell carcinoma or prostate cancer.
13. A compound according to any one of claims 8 to 12 which reduces the Tm of a JMJD2 subfamily histone lysyl demethylase.
14. A compound according to any one of claims 8 to 12 which inhibits the en2yme JMJD2A and / or which does not inhibit the enzyme PHD2.
15. A compound according to any one of claims 8 to 14 which comprises sulphur and/or selenium.
16. A compound according to any one of claims 8 to 15 which is:
- a disulfide of formula (I)
Figure imgf000045_0001
wherein R1 and R2, which are the same or different, are independently selected from unsubstituted or substituted Ci-20 alkyl, unsubstituted or substituted C2-20 alkenyl,
unsubstituted or substituted C2-2o alkynyl, unsubstituted or substituted C3-2o carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, cyano, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, and a group of formula (lb)
Figure imgf000046_0001
(lb)
wherein Y is O or S, and wherein R and R are the same or different and are independently selected from hydrogen, unsubstituted or substituted C1-10 alkyl, unsubstituted or substituted C2-10 alkenyl, unsubstituted or substituted C2-io alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, carboxy, unsubstituted or substituted ester, and unsubstituted or substituted acyl, provided that R12 and R13 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-2o heterocyclyl group or an unsubstituted or substituted heteroaryl group,
wherein said Ci-2o alkyl, C2-2o alkenyl, C2-20 alkynyl, Cj-io alkyl, C2-10 alkenyl and C2-io alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C 4 alkyl;
or a pharmaceutically acceptable salt thereof; an organoselenium compound of formula (II)
^Se R21 (II)
wherein
R20 is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3-2o carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted C1-2o alkyl, unsubstituted or substituted C2-20 alkenyl,
unsubstituted or substituted C2-2o alkynyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, or unsubstituted or substituted acyl, wherein said Ci-20 alkyl, C2-20 alkenyl and C2-20 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Q-4 alkyl; and R21 is hydrogen, halo, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, unsubstituted or substituted C1-2o alkyl, unsubstituted or substituted C2-20 alkenyl, unsubstituted or substituted C2-20 alkynyl, cyano, amino, hydroxyl, thiol,
unsubstituted or substituted C^o alkylamino, unsubstituted or substituted di(C1-1o)alkylamino, unsubstituted or substituted arylamino, unsubstituted or substituted diarylamino, unsubstituted or substituted arylalkylamino, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted acyloxy, unsubstituted or substituted Cj.io alkoxy, unsubstituted or substituted aryloxy, unsubstituted or substituted C^o alkylthio, unsubstituted or substituted arylthio, or -Se-R , wherein R is as defined above for R , wherein said C[.20 alkyl, C2-2o alkenyl and C2-20 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Q-4 alkyl;
or a pharmaceutically acceptable salt thereof;
- a seleninic acid derivative of formula (III)
O II
/Se R25
R24 CT (HI)
wherein
R24 is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C1-20 alkyl, unsubstituted or substituted C2-20 alkenyl,
unsubstituted or substituted C2.20 alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3.20 heterocyclyl, wherein said C1-20 alkyl, C2.2o alkenyl and C2-2o alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Cr4 alkyl; and
R25 is hydrogen, unsubstituted or substituted C1-2o alkyl, unsubstituted or substituted
C2-2o alkenyl, unsubstituted or substituted C2-20 alkynyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3-2o carbocyclyl, unsubstituted or substituted C3.20 heterocyclyl, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido or -Se(0)R26, wherein R26 is as defined above for R24;
or a pharmaceutically acceptable salt thereof; - a cyclic selenium compound of formula (IV)
Figure imgf000048_0001
wherein
Ar is an unsubstituted or substituted aryl or heteroaryl ring;
L1 is -C(O)- or unsubstituted or substituted alkylene; and
X is N( 27), O, S, C(0) or -C(R27)(R28)-, wherein R27 and R28, which are the same or different when both are present, are independently selected from hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted Ci- alkyl, unsubstituted or substituted C2-1o alkenyl, unsubstituted or substituted C2-10 alkynyl, unsubstituted or substituted C3-2o carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, cyano, amino, halo, nitro, hydroxyl, thiol, unsubstituted or substituted CMO alkylamino, unsubstituted or substituted di(Ci-i0)alkylamino, unsubstituted or substituted arylamino, unsubstituted or substituted diarylamino, unsubstituted or substituted arylalkylamino, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted acyloxy, unsubstituted or substituted Ci-io alkoxy, unsubstituted or substituted aryloxy, unsubstituted or substituted Ci-10 alkylthio, and unsubstituted or substituted arylthio, wherein said CMO alkyl, C2-10 alkenyl and C2-10 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C 4 alkyl;
or a pharmaceutically acceptable salt thereof; or
- a selenite salt.
17. A compound according to claim 16 wherein the disulfide of formula (I) is a thiuram disulfide of formula (la)
Figure imgf000048_0002
wherein
R3, R4, R5 and R6 are the same or different and are independently selected from hydrogen, unsubstituted or substituted Q-io alkyl, unsubstituted or substituted C -i0 alkenyl, unsubstituted or substituted C2-io alkynyl, unsubstituted or substituted C3-2o carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, carboxy, unsubstituted or substituted ester, and unsubstituted or substituted acyl, wherein said C1-10 alkyl, C2-10 alkenyl and C2-10 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or Ci- alkyl, provided that R3 and R4 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3- 0 heterocyclyl group or an unsubstituted or substituted heteroaryl group, and
provided that R5 and R6 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3-2o heterocyclyl group or an unsubstituted or substituted heteroaryl group.
18. A compound according to claim 16 or claim 17 wherein, in the
organoselenium compound of formula (II),
R20 is unsubstituted or substituted aryl or heteroaryl; and
R21 is hydrogen, halo, unsubstituted or substituted C1-20 alkyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, or -Se-R22, wherein R22 is as defined for R20 wherein said C1-20 alkyl is optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or d-4 alkyl.
19. A compound according to any one of claims 16 to 18 wherein, in the seleninic acid derivative of formula (III),
R24 is unsubstituted or substituted aryl, or unsubstituted or substituted C1-10 alkyl; and R25 is hydrogen.
20. A compound according to any one of claims 16 to 19 wherein the cyclic selenium compound of formula (IV is a compound of formula (IVa)
Figure imgf000049_0001
wherein
L1 is -C(O)- or unsubstituted or substituted Ci-2 alkylene; and
X is N(R ), wherein R is hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, or unsubstituted or substituted Cno alkyl.
21. A compound according to any one of claims 16 to 20 wherein the selenite salt is a selenite salt of formula (V)
[Xn+]p[Se03 2-]q (v) wherein
X is a cation having a charge n+ wherein n is a positive integer; and
p and q are positive integers wherein n multiplied by p is equal to 2q.
22. A compound according to any one of claims 16 to 21 which is:
1 -(diethylthiocarbamoyldisulfanyl)-N,N-diemyl-methanethioamide (compound 1 a; disulfiram), bis(pyrrolidine-thiocarbamoyl) disulfide (compound lb), Na?Se03 (compound 11), PhSeOOH (compound 12; benzene seleninic acid), PhSeSePh (compound 13), PhSeCl (compound 14), PhSeH (compound 15), or:
Figure imgf000050_0001
(compound 16; ebselen).
23. A method of identifying a compound that promotes the release of Zn(II) ions from a JMJD2 subfamily histone lysyl demethylase, said method comprising the steps of:
(a) contacting a subfamily JM JD2 histone lysyl demethylase with a test compound; and
(b) monitoring the release of Zn(II) ions from the JMJD2 subfamily histone lysyl demethylase.
24. A pharmaceutical composition comprising
(a) an inhibitor of a subfamily J JD2 histone lysyl demethylase identified by a method of any one of claims 1 to 7 or 23; or
(b) a compound as defined in any one of claims 8 to 22
and a pharmaceutically acceptable carrier or diluent.
A composition according to claim 24 for use in the treatment of cancer.
26. A method of inhibiting a JMJD2 subfamily histone lysyl demethylase without also inhibiting a 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase, said method comprising:
(a) identifying an inhibitior by a method according to any one of claims 1 to 7 or 23; and
(b) contacting a sample comprising at least one JMJD2 subfamily histone lysyl demethylase and at least one 2-oxoglutarate dependent oxygenase that is not a JMJD2 subfamily histone lysyl demethylase with the inhibitor of step (a) or with a compound as defined in any one of claims 8 to 22.
27. A compound which is:
- a disulfide of formula (I)
/S ^ ^R2
R1 S (I)
wherein R1 and R2, which are the same or different, are independently selected from unsubstituted or substituted C1-20 alkyl, unsubstituted or substituted C2-2o alkenyl,
unsubstituted or substituted C2-20 alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, cyano, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, and a group of formula (lb)
Figure imgf000051_0001
wherein Y is O or S, and wherein R and are the same or different and are independently selected from hydrogen, unsubstituted or substituted Ci-io alkyl, unsubstituted or substituted C2-1o alkenyl, unsubstituted or substituted C2-10 alkynyl, unsubstituted or substituted C3.20 carbocyclyl, unsubstituted or substituted C3.20 heterocyclyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, carboxy, unsubstituted or substituted ester, and unsubstituted or substituted acyl, provided that R12 and R13 may together form, with the nitrogen atom to which they are bonded, an unsubstituted or substituted C3.20 heterocyclyl group or an unsubstituted or substituted heteroaryl group, wherein said C1-20 alkyl, C2-2o alkenyl, C2.20 alkynyl, C^o alkyl, C2-10 alkenyl and C2-1o alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C1-4 alkyl;
or a pharmaceutically acceptable salt thereof;
- an organoselenium compound of formula (II)
R20
^Se R21 (II)
wherein-
R20 is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, unsubstituted or substituted C1.20 alkyl, unsubstituted or substituted C2-20 alkenyl,
unsubstituted or substituted C2-20 alkynyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, or unsubstituted or substituted acyl, wherein said C1.20 alkyl, C2-2o alkenyl and C2-2o alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or d-4 alkyl; and R21 is hydrogen, halo, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3-2o carbocyclyl, unsubstituted or substituted C3J20 heterocyclyl, unsubstituted or substituted C1-2o alkyl, unsubstituted or substituted C2-20 alkenyl, unsubstituted or substituted C2.20 alkynyl, cyano, amino, hydroxyl, thiol,
unsubstituted or substituted CMO alkylamino, unsubstituted or substituted di(C1-10)alkylarnino, unsubstituted or substituted arylamino, unsubstituted or substituted diarylamino, unsubstituted or substituted arylalkylamino, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted acyloxy, unsubstituted or substituted C O alkoxy, unsubstituted or substituted aryloxy, unsubstituted or substituted C1-10 alkylthio, unsubstituted or substituted arylthio, or -Se-R , wherein R is as defined above for R , wherein said C1-20 alkyl, C2-20 alkenyl and C2-20 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or CR4 alkyl;
or a pharmaceutically acceptable salt thereof;
- a seleninic acid derivative of formula (III)
Figure imgf000053_0001
wherein
R is unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C1-20 alkyl, unsubstituted or substituted C2.20 alkenyl,
unsubstituted or substituted C2-20 alkynyl, unsubstituted or substituted C3-20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, wherein said C1-20 alkyl, C2-20 alkenyl and C2-20 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C 4 alkyl; and
R25 is hydrogen, unsubstituted or substituted C1-20 alkyl, unsubstituted or substituted C2-20 alkenyl, unsubstituted or substituted C2-20 alkynyl, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted C3.20 carbocyclyl, unsubstituted or substituted C3-20 heterocyclyl, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted amido, unsubstituted or substituted thioamido or -Se(0)R26, wherein R26 is as defined above for R24;
or a pharmaceutically acceptable salt thereof;
- a cyclic selenium compound of ormula (IV)
Figure imgf000053_0002
wherein
Ar is an unsubstituted or substituted aryl or heteroaryl ring;
L1 is -C(O)- or unsubstituted or substituted C\ alkylene; and
X is N(R27), 0, S, C(O) or -C(R27)(R28)-, wherein R27 and R28, which are the same or different when both are present, are independently selected from hydrogen, unsubstituted or substituted aryl, unsubstituted or substituted heteroaryl, unsubstituted or substituted Cno alkyl, unsubstituted or substituted C2-io alkenyl, unsubstituted or substituted C2-io alkynyl, unsubstituted or substituted C3.20 carbocyclyl, unsubstituted or substituted C3-2o heterocyclyl, cyano, amino, halo, nitro, hydroxyl, thiol, unsubstituted or substituted CMO alkylamino, unsubstituted or substituted di(C1-i0)alkylamino, unsubstituted or substituted arylamino, unsubstituted or substituted diarylamino, unsubstituted or substituted arylalkylamino, unsubstituted or substituted amido, unsubstituted or substituted thioamido, carboxy, unsubstituted or substituted ester, unsubstituted or substituted acyl, unsubstituted or substituted acyloxy, unsubstituted or substituted C O alkoxy, unsubstituted or substituted aryloxy, unsubstituted or substituted C1-10 alkylthio, and unsubstituted or substituted arylthio, wherein said C M O alkyl, C2-i0 alkenyl and C2-10 alkynyl groups are optionally interrupted by O, S, N(R"), arylene or heteroarylene, wherein R" is H, aryl or C1-4 alkyl;
or a pharmaceutically acceptable salt thereof; or
- a selenite salt, provided that the compound is other than: 1 -(diethylthiocarbamoyldisulfanyl)-N,N- diethyl-methanethioamide (compound la; disulfiram); bis(pyrrolidine-thiocarbamoyl) disulfide (compound lb); bis(dibenzylthiocarbamoyl) disulfide (compound lc); glutathione (disulfide form) (compound 5); cystamine (compound 9); Na2Se03 (compound 11);
PhSeOOH (compound 12; benzene seleninic acid); PhSeSePh (compound 13); PhSeCl (compound 14), PhSeH (compound 15); and
Figure imgf000054_0001
(compound 16; ebselen).
PCT/GB2010/001713 2009-09-11 2010-09-10 Jmjd2 demethylase inhibitors WO2011030108A1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
GB0916010.2 2009-09-11
GB0916010A GB0916010D0 (en) 2009-09-11 2009-09-11 JMJD2 demethylase inhibitors

Publications (1)

Publication Number Publication Date
WO2011030108A1 true WO2011030108A1 (en) 2011-03-17

Family

ID=41277608

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/GB2010/001713 WO2011030108A1 (en) 2009-09-11 2010-09-10 Jmjd2 demethylase inhibitors

Country Status (2)

Country Link
GB (1) GB0916010D0 (en)
WO (1) WO2011030108A1 (en)

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2014055634A1 (en) * 2012-10-02 2014-04-10 Yale University Identification of small molecule inhibitors of jumonji at-rich interactive domain 1a (jarid1a) and 1b (jarid1b) histone demethylase
CN103739534A (en) * 2013-12-24 2014-04-23 武汉径河化工有限公司 Synthetic method of rubber accelerator tetrabenzylthiuram disulfide
US9310353B2 (en) 2014-02-27 2016-04-12 The Procter & Gamble Company Method for evaluating bioavailable zinc

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2005013951A2 (en) * 2003-08-11 2005-02-17 Pomeranian Academy Of Medicine Pharmaceutical compositions for preventing breast and ovarian cancer
US20050096304A1 (en) * 1998-09-08 2005-05-05 David White Method of treating cancer using dithiocarbamate derivatives
WO2005110396A2 (en) * 2004-04-28 2005-11-24 Uab Research Foundation Nitrated lipids and methods of making and using thereof
WO2006096759A2 (en) * 2005-03-08 2006-09-14 Sound Pharmaceuticals Incorporated Methods and compositions for treating cancer

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050096304A1 (en) * 1998-09-08 2005-05-05 David White Method of treating cancer using dithiocarbamate derivatives
WO2005013951A2 (en) * 2003-08-11 2005-02-17 Pomeranian Academy Of Medicine Pharmaceutical compositions for preventing breast and ovarian cancer
WO2005110396A2 (en) * 2004-04-28 2005-11-24 Uab Research Foundation Nitrated lipids and methods of making and using thereof
WO2006096759A2 (en) * 2005-03-08 2006-09-14 Sound Pharmaceuticals Incorporated Methods and compositions for treating cancer

Non-Patent Citations (15)

* Cited by examiner, † Cited by third party
Title
BERGE ET AL.: "Pharmaceutically Acceptable Salts", J. PHARM. SCI., vol. 66, 1977, pages 1 - 19
BERGE, S.M., J PHARM. SCI., vol. 66, 1977, pages 1 - 19
CHOWDHURY ET AL., STRUCTURE, 2009, pages 981 - 9
COOK; HILTON; MECINOVIC; MOTHERWELL; FIGG; SCHOFIELD, J BIOL CHEM, 9 July 2009 (2009-07-09)
DEVEREUX ET AL., NUCLEIC ACIDS RESEARCH, vol. 12, 1984, pages 387 - 395
JACOB ET AL., BIOCHEM BIOPHYS RES COMMUN, 1998, pages 569 - 73
LATCHED ET AL., J. MOL. BIOL., vol. 215, 1990, pages 403 - 10
LATCHED, J. MOL. EVOL, vol. 36, 1993, pages 290 - 300
LOO ET AL., J MED CHEM, 1996, pages 4313 - 20
LOO JOSEPH A ET AL: "Biophysical characterization of zinc ejection from HIV nucleocapsid protein by anti-HIV 2,2'-dithiobis(benzamides) and benzisothiazolones", JOURNAL OF MEDICINAL CHEMISTRY, vol. 39, no. 21, 1996, pages 4313 - 4320, XP002607073, ISSN: 0022-2623 *
NG ET AL., NATURE, 2008, pages 87 - 91
NG STANLEY S ET AL: "Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity", NATURE (LONDON), vol. 448, no. 7149, July 2007 (2007-07-01), pages 87, XP002607074, ISSN: 0028-0836 *
NIESEN ET AL., NAT. PROTOCOLS, 2007, pages 2212 - 2221
SEKIRNIK ROK ET AL: "Inhibition of the histone lysine demethylase JMJD2A by ejection of structural Zn(II).", CHEMICAL COMMUNICATIONS (CAMBRIDGE, ENGLAND) 14 NOV 2009 LNKD- PUBMED:19841782, no. 42, 14 November 2009 (2009-11-14), pages 6376 - 6378, XP002607072, ISSN: 1364-548X *
YIN ET AL., POLYHEDRON, 2008, pages 663 - 670

Cited By (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2014055634A1 (en) * 2012-10-02 2014-04-10 Yale University Identification of small molecule inhibitors of jumonji at-rich interactive domain 1a (jarid1a) and 1b (jarid1b) histone demethylase
CN103739534A (en) * 2013-12-24 2014-04-23 武汉径河化工有限公司 Synthetic method of rubber accelerator tetrabenzylthiuram disulfide
CN103739534B (en) * 2013-12-24 2016-04-27 武汉径河化工(潜江)有限公司 The synthetic method of rubber accelerator tetrabenzylthiuram disulfide
US9310353B2 (en) 2014-02-27 2016-04-12 The Procter & Gamble Company Method for evaluating bioavailable zinc

Also Published As

Publication number Publication date
GB0916010D0 (en) 2009-10-28

Similar Documents

Publication Publication Date Title
CA2173130E (en) Glutathione s-transferase-activated compounds
US6239169B1 (en) Non-steroidal polycyclic ring sulphamate derivatives, their preparation and their use as oestrone sulphatase inhibitors
WO2010043866A2 (en) Histone lysine demethylase inhibitors
KR102017324B1 (en) Novel ASM direct inhibition compound 2-amino-2-(1,2,3-triazol-4-yl)propane-1,3-diol derivatives and uses thereof
AU2016222315A1 (en) Compositions of selenoorganic compounds and methods of use thereof
EP4126841B1 (en) Compounds for inhibition of fibroblast activation protein
US9629863B2 (en) CDK5 inhibitors and therapeutic uses thereof
Lee et al. Activation of the Nrf2 signaling pathway and neuroprotection of nigral dopaminergic neurons by a novel synthetic compound KMS99220
WO2011030108A1 (en) Jmjd2 demethylase inhibitors
IL293239A (en) Cell-permeable cyclic peptides and uses thereof
EP2688901B1 (en) INHIBITORS OF 17ß-HSD1, 17ß-HSD3 AND 17ß-HSD10
US10626140B2 (en) Prodrugs of 17β-HSD1-inhibitors
US6566341B1 (en) Derivative of isoindigo, indigo and indirubin for the treatment of cancer
WO2000075150A1 (en) Ip3 receptor ligands
Ye et al. A highly selective and sensitive endoplasmic reticulum-targeted probe reveals HOCl-and cisplatin-induced H 2 S biogenesis in live cells
EP2522394B1 (en) Substituted phosphonates and their use decreasing amyloid aggregates
JP2024504257A (en) IP4-4,6-substituted derivative compound
CN108698984B (en) Bicyclic compounds for use as medicaments, in particular for the treatment of parkinson&#39;s disease
JP2022538602A (en) AKR1C3 inhibitors and their medical uses
US9018255B2 (en) Esters of (acyloxymethyl)acrylamide, a pharmaceutical composition containing them, and their use as inhibitors of the thioredoxin—thioredoxin reductase system
EP3782990A1 (en) Mofezolac derivatives as multi-functions selective cox-1 inhibitors
US20220031656A1 (en) Compositions and methods for activating nrf2-dependent gene expression
McGirr et al. Glutathione conjugate formation without N-demethylation during the peroxidase catalysed N-oxidation of N, N′, N, N′-tetramethylbenzidine
EP4351620A1 (en) Cell-permeable cyclic peptides and uses thereof
WO2021183431A1 (en) Fem1b protein binding agents and uses thereof

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 10754976

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 10754976

Country of ref document: EP

Kind code of ref document: A1