WO2010135853A1 - Fermentation process controlling method and fermentation process controller - Google Patents
Fermentation process controlling method and fermentation process controller Download PDFInfo
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- WO2010135853A1 WO2010135853A1 PCT/CN2009/000598 CN2009000598W WO2010135853A1 WO 2010135853 A1 WO2010135853 A1 WO 2010135853A1 CN 2009000598 W CN2009000598 W CN 2009000598W WO 2010135853 A1 WO2010135853 A1 WO 2010135853A1
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- cell density
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12M—APPARATUS FOR ENZYMOLOGY OR MICROBIOLOGY; APPARATUS FOR CULTURING MICROORGANISMS FOR PRODUCING BIOMASS, FOR GROWING CELLS OR FOR OBTAINING FERMENTATION OR METABOLIC PRODUCTS, i.e. BIOREACTORS OR FERMENTERS
- C12M41/00—Means for regulation, monitoring, measurement or control, e.g. flow regulation
- C12M41/48—Automatic or computerized control
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- the invention relates to a fermentation technology, in particular to a fermentation process control method and a fermentation process. Background technique
- Fermentation is an important process in the realization of biochemical engineering, and the products obtained by fermentation can be widely used in the fields of pharmaceuticals, food and beverages, energy, and water treatment. In order to increase production, reduce costs and better comply with the requirements of the relevant regulations, it is often necessary to automate the fermentation process. However, due to the complexity of the fermentation process itself, the degree of automation of the fermentation process is far less than that of chemical and petrochemical processes.
- the fermenter operates in a fed-batch fermentation mode with a feed line, on-line sensors, and some necessary control loops.
- the quality of the fermented product is related to factors such as the specific growth rate of the cells, and the specific growth rate of the cells is related to the nutrient feeding rate, that is, if the nutrient feeding rate can be well controlled, The quality of the fermented product is greatly improved.
- various control methods have been proposed in the prior art, such as - The specific growth rate of the cells is controlled by continuously changing the nutrient feeding rate, wherein the nutrient feeding rate is predetermined and gradually decreased according to a continuous function, that is, pre-specified nutrient feeding rate Change track. This method attempts to control the specific growth rate of the cells to a suitable point without feedback, but this method is severely affected by external disturbances, because the change in nutrient feed rate is pre-defined, once If there is interference, the actual change will deviate from the specified situation.
- the specific growth rate is calculated based on the co 2 content in the exhaust gas discharged from the fermentation process measured online, and the specific growth rate is maintained at a stable level by adjusting the feed rate of the carbon source.
- this method needs to rely on the co 2 content measured online, which is large in noise, easily causes large batch fluctuations, and may even cause feeding errors. Summary of the invention
- Another object of the present invention is to provide a fermentation process controller that is capable of accurately and conveniently controlling the feed rate of nutrients.
- a fermentation process control method comprising:
- the fermentation period currently in the fermentation process is determined; and the nutrient feeding rate in the fermentation process is controlled according to a control algorithm corresponding to the determined fermentation period.
- the determining, according to the obtained cell characteristic measurement result, that the fermentation period currently in the fermentation process comprises:
- the trending analysis of the cell density measurement results to determine that the fermentation period currently in the fermentation process comprises:
- the cell density measurement results at each specified time point acquired after the A specified time points are verified, and the obtained cell density measurement results at each specified time point are calculated.
- the straight line equation to calculate a difference in cell density measurements at the specified time point, and comparing each difference with a predetermined limit level, if consecutive B differences are greater than the limit level , determining that the current fermentation period has been transferred from the delay period to the exponential growth period, and determining the time point corresponding to the first difference greater than the limit level as the inflection point;
- the cell density measurement results at each specified time point acquired after the C specified time points are verified, and the obtained cell density measurement results at each specified time point are calculated and Using the exponential equation to calculate a difference in cell density measurements at the specified time point, and comparing each difference to a predetermined limit level, if consecutive D differences are greater than the limit level , determining that the current fermentation period has shifted from the exponential growth phase to the stationary phase; the A, B, C, and D are positive integers greater than one;
- the trending of the cell density measurement results to determine that the fermentation process currently in the fermentation period comprises:
- the continuously obtained E group cell density measurement results are respectively fitted into a straight line; the E is a positive integer greater than 1; wherein, the cell density measurement results included in each group of cell density measurement results are included The same number; And, each time the fitting of the set of cell density measurement results is completed, comparing the slope of the fitted straight line with a preset first threshold value, if the slope of the fitted straight line is greater than the first Threshold, determining that the current fermentation period has been transferred from the delay period to the exponential growth phase; thereafter, comparing the slope of the line fitted according to the next set of cell density measurements with a predetermined second threshold, if The slope of the fitted straight line is less than the second threshold, and it is determined that the current fermentation period has shifted from the exponential growth phase to the stationary phase.
- the three-dimensional spatial tracking analysis of the cell density measurement and the cell distribution measurement results to determine that the fermentation period currently in the fermentation process comprises:
- the obtained cell distribution measurement results and the cell density measurement results at each specified time point are plotted in a three-dimensional space; the cell distribution measurement results in a proportion of large cells;
- the method before determining the fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result, the method further includes:
- controlling the nutrient feeding rate in the fermentation process according to a control algorithm corresponding to the determined fermentation period comprises:
- the nutrient feed rate was calculated as follows:
- the / represents a specific growth rate calculated using the obtained cell density measurement result
- the ⁇ represents a specific growth rate predetermined value
- the indicating the calculated specific growth rate and the specific growth rate predetermined value The difference between ⁇ ; the sum is an adjustable parameter; the representation of the nutrient feed rate; the F Q ( ) represents the forward feedback portion, calculated using a control algorithm corresponding to the determined fermentation period inferred.
- the calculation method of the forward feedback portion F iQ (i) includes:
- the / ⁇ (0 ⁇ + ⁇ (0 ; wherein the sum is an adjustable parameter
- the ( ⁇ ) ⁇ : ⁇ 2 ; wherein; ⁇ represents a cell density measurement result, the ⁇ : is an adjustable parameter, and the / / ⁇ 2 represents a predetermined growth rate of the exponential growth phase;
- the ⁇ + ⁇ - ⁇ wherein the ⁇ represents an initial nutrient feeding rate during the stationary period, the tunable parameter, ⁇ 3 denotes a predetermined value of the specific growth rate of the stationary period, the indicating the cell density measurement result, the ⁇ 2 indicating the start time of the stationary period, and the 2 indicating the cell density measurement at the time ⁇ 2 .
- a fermentation process controller including - a fermentation period identification module, configured to determine a fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result;
- An algorithm selection module is configured to select a control algorithm corresponding to the determined fermentation period; and a control algorithm module for controlling the nutrient feeding rate in the fermentation process according to the selected control algorithm.
- the fermentation period identification module comprises:
- a data pre-processing sub-module configured to pre-process the obtained cell characteristic measurement result, identify an abnormal point and perform culling
- the trend analysis and fermentation period identification sub-module is configured to determine a current state of the fermentation process by performing trend analysis on the cell density measurement result when the determination result includes only the cell density measurement result in the obtained cell characteristic measurement result.
- the fermentation is determined by performing three-dimensional spatial tracking analysis on the cell density measurement result and the cell distribution measurement result. The process is currently in the fermentation period.
- the fermentation process controller further includes:
- the control algorithm module includes:
- a first calculation sub-module for calculating a difference between a specific growth rate from the derivation model module and a predetermined value of a pre-stored specific growth rate; ⁇ according to the determined fermentation period, the value of the / ⁇ Will also be different; a second calculation subunit for calculating the nutrient feed rate in the following manner:
- F s (0 F s0 (t) + K c [e(t) + ⁇ fe ⁇ t)dt]; wherein, the sum is an adjustable parameter; the said represents a nutrient feeding rate; (0 indicates the forward feedback portion;
- the ⁇ W ⁇ When the determined fermentation period is an exponential growth phase, the ⁇ W ⁇ ; wherein, the cell density measurement result, the adjustable parameter, the predetermined growth rate of the index growth period is a predetermined value ;
- the D o) a + ⁇ /> 3 ( - ⁇ 2 ) ; wherein the ⁇ represents an initial nutrient feeding rate during the stationary period, and the The parameter is adjusted, the 3 indicates a predetermined value of the specific growth rate of the stationary phase, the indicating the cell density measurement result, the ⁇ indicates the starting time of the stationary period, and the 1 ⁇ 2 indicates the cell density measurement at the time of ⁇ 2 .
- the fermentation period currently in the fermentation process is identified, and different control algorithms are respectively adopted for different fermentation periods, thereby controlling the nutrient supplement in the fermentation process.
- the feed rate is such that the nutrient feeding rate in different fermentation periods is always at an optimal value, and the accuracy of the feeding is ensured; moreover, the solution of the invention is simple to implement, convenient to popularize, and can be applied to various fermentation processes. For example, E. coli, yeast, and fermentation of animal cells, etc., and can significantly improve product quality and fermentation efficiency.
- ⁇ RTIgt 1 is a flow chart of an embodiment of a fermentation process control method of the present invention
- FIG. 2 is a schematic diagram of a fermentation period included in the existing fermentation process
- FIG. 3 is a schematic diagram of an implementation principle of a method 1 according to an embodiment of the present invention.
- FIG. 4 is a schematic diagram of an implementation principle of a method 2 according to an embodiment of the present invention.
- FIG. 5 is a schematic diagram of a 3D space in the method 3 according to the embodiment of the present invention.
- FIG. 6 is a schematic structural view of an embodiment of a fermentation process controller of the present invention.
- the present invention proposes a novel fermentation process control method, which uses the obtained cell characteristic measurement results (such as cell density measurement results and cell distribution measurement results) to determine the fermentation process currently in the fermentation process.
- Period, and different control algorithms are used for the different fermentation periods determined to control the nutrient feeding rate during the fermentation process.
- the exponential growth period and the stationary period adopt adaptive control.
- FIG. 1 is a flow chart of an embodiment of a fermentation process control method of the present invention. As shown in Figure 1, it includes:
- Step 101 Determine the current fermentation period of the fermentation process based on the obtained cell characteristic measurement results.
- FIG 2 is a schematic diagram of the fermentation period included in the existing fermentation process. As shown in Figure 2, for a complete fermentation process, there are four different fermentation periods, including the delay period, the exponential growth phase, the stationary phase, and the death phase. Since in practice, the required fermentation process is usually completed before entering the death period, that is, the fermented product has been obtained, therefore, only the delay period, the exponential growth period, and the smoothness are determined in the embodiment of the present invention. Period, and will not involve the death period.
- Cell characteristics such as cell density and cell distribution, can characterize the cells themselves during different fermentation phases Inherent physiological changes, therefore, by analyzing the measurement of cell characteristics, different fermentation periods can be determined.
- the three-dimensional spatial tracking analysis can be performed on the cell density measurement result and the cell distribution measurement result to determine different fermentation periods, and the specific implementation is as shown in the following method 3. If the cell distribution measurement result cannot be obtained correctly, that is, only the cell density measurement result can be obtained, the different fermentation period can be determined by performing trend analysis on the cell density measurement result, and the specific method is as follows:
- Method 1 Different fermentation periods were determined by trend analysis of cell density measurements.
- the obtained cell density measurement result is preprocessed, and the abnormal point is identified and rejected. How to perform preprocessing is a prior art, and will not be described again.
- the cell density measurement results (such as 4, and the measurement time interval between each two measurement results greater than 2 minutes) are continuously acquired at a plurality of specified time points. Straight line, get the fitted linear equation, how to fit into the existing technology, no longer repeat them.
- the above cell density measurement results are usually measured by an online density sensor. If there is no online cell density sensor, it can also be manually measured by offline method, such as by sampling, or by using the co 2 measured by the exhaust gas analyzer. The concentration of 0 2 is directly calculated.
- the cell density measurement results at each specified time point acquired after the above four specified time points are verified, and the cells actually obtained at each specified time point are calculated.
- the difference between the density measurement and the cell density measurement at the specified time point calculated using the fitted line equation, and each difference is a predetermined limit level (eg, the online density sensor error) Twice)
- a predetermined limit level eg, the online density sensor error
- Twice Twice
- the above specified time point refers to the assumption that the online density sensor outputs cell density every three minutes. Measurement results, then each cell density measurement can be used, or only some of the cell density measurements specified therein can be used. Subsequent similar situations will not be described again.
- the index curve is fitted by the cell density measurement results of a plurality of consecutively selected time points (eg, 4), and the fitted exponential equation is obtained as follows:
- FIG. 3 is a schematic diagram of an implementation principle of the method 1 according to an embodiment of the present invention. As shown in Fig. 3, the dotted line indicates the fitted straight line, indicating the inflection point.
- Method 2 Determine the different fermentation periods by performing a slope change trend analysis on the cell density measurement results.
- the cell density measurement results are linearly fitted continuously using a moving window measured at a fixed interval. That is: from the beginning of the fermentation process, the continuously acquired sets of cell density measurements are respectively fitted into a straight line, each group including the same number of (for example, 4) cell density measurements (every two The measurement interval between measurement results is greater than 2 minutes).
- the online density sensor measures 12 cell density measurements, which are numbered 1 to 12 in order of increasing time, then 1 to 4 can be used as the first group, and 5 to 8 can be used as the second group. 9 to 12 as the third group; or, 1 to 4 may be used as the first group, and then after 2 points, 7 to 10 are taken as the second group.
- the specific grouping manner is not limited.
- the slope of the fitted straight line is compared with a preset first threshold value each time a fitting of a set of cell density measurement results is completed, and if the slope of the fitted straight line is greater than the first threshold value, determining the current The fermentation period has been transferred from the delay period to the exponential growth phase; after that, it will be based on the next
- the slope of the line fitted by the group cell density measurement is compared with a preset second threshold. If the slope of the fitted line is less than the second threshold, it is determined that the current fermentation period has been transferred from the exponential growth period. Smooth period.
- FIG. 4 is a schematic diagram of an implementation principle of a method 2 according to an embodiment of the present invention.
- a broken line 1 indicates a straight line fitted when the fermentation process is in a delay period
- a broken line 2 indicates a first threshold
- a broken line 3 indicates a straight line that has been fitted after a transition from a delay period to an exponential growth period.
- ⁇ indicates the inflection point.
- Method 3 Different fermentation periods were determined by 3D spatial tracking analysis of cell density measurements and cell distribution measurements.
- FIG. 5 is a schematic diagram of a 3D space in the method 3 according to the embodiment of the present invention.
- the second time point calculates the difference between the proportion of large cells at each specified time point and the difference between the cell density measurement and the ratio of large cells at the previous specified time point and the cell density measurement, and The calculated difference is compared with a preset first combined threshold; obviously, in 3D space, the calculated difference between the proportion of large cells and the cell density measurement will be a vector, and the first combined threshold Is also a vector; if a plurality of consecutive differences (such as 3) are greater than the first combined threshold, it is determined that the current fermentation period has been transferred from the delay period to the exponential growth period, and the first one is greater than the first combined threshold The time point corresponding to the difference is determined as the inflection point.
- Step 102 Calculate the specific growth rate.
- the cell density measurement can be used to calculate the specific growth rate / as follows:
- Step 103 Using the calculated specific growth rate, the nutrient feeding rate in the fermentation process is controlled according to a control algorithm corresponding to the determined fermentation period.
- the nutrients required by the cells are different, for example: During the lag phase, the cells need to adapt to the new environment, grow slowly, so less nutrients are needed; in the exponential growth phase, the cells enter the exponential division. At the stage, sufficient nutrient supply is required; during the stationary phase, the cell growth rate is approximately equal to the cell death rate, and the total cell number does not increase, so the nutrients consumed are also reduced. Due to the complexity and non-linearity of the fermentation process, it is not suitable to use a single control algorithm throughout the fermentation process.
- the nutrient feed rate can be controlled by forward feedback or backward feedback control algorithms as follows:
- F Q ( ) is calculated as:
- iQ ( ) the value of iQ ( ) will be adaptive in the stationary period according to the change of cell density measurement results, which is calculated as:
- a plateau represents the initial nutrient feed rate, equivalent to the nutrient feed rate at the end of the exponential growth phase, i.e., A 2 , 2; is an adjustable parameter, 3 represents a predetermined value of the specific growth rate of the stationary phase, represents a cell density measurement result, 2 represents a start time of the stationary phase, and 2 represents a cell density measurement result at 2 o'clock. Again, you can see that.
- the value of () will be adaptively adjusted based on changes in cell density measurements.
- the specific values of the threshold and the adjustable parameters and the like involved in the above embodiments may be determined according to actual needs.
- the solution of the present invention can be extended to control other aspects, such as dissolved oxygen.
- FIG. 6 is a schematic diagram showing the composition of the embodiment of the fermentation process controller of the present invention. As shown in Figure 6, it includes:
- a fermentation period identification module 61 configured to determine a fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result;
- the algorithm selection module 62 is configured to select a control algorithm corresponding to the determined fermentation period; and the control algorithm module 63 is configured to control the nutrient feeding rate in the fermentation process according to the selected control algorithm.
- the fermentation period identification module 61 includes:
- the data preprocessing sub-module 611 is configured to preprocess the obtained cell characteristic measurement result, identify the abnormal point and perform the culling;
- the determining sub-module 612 is configured to determine whether the acquired cell characteristic measurement result includes only the cell density measurement result or both the cell density measurement result and the cell distribution measurement result, and notify the trend analysis and the fermentation period identification sub-module 613 of the determination result. ;
- the trend analysis and fermentation period identification sub-module 613 is configured to determine the current fermentation period of the fermentation process by performing trend analysis on the cell density measurement result when the determination result includes only the cell density measurement result in the obtained cell characteristic measurement result.
- the result of the determination is that the acquired cell characteristic measurement results include both the cell density measurement result and the cell distribution measurement result
- the three-dimensional spatial tracking analysis of the cell density measurement result and the cell distribution measurement result is used to determine the fermentation currently in the fermentation process. period.
- the fermentation process controller shown in FIG. 6 may further include:
- the control algorithm module 63 includes:
- the first calculation sub-module 631 is configured to calculate a difference between the specific growth rate ⁇ from the derivation model module 64 and a predetermined growth rate predetermined value ⁇ ⁇ of the pre-preserved according to the determined fermentation period, and the value will also be different;
- the second calculation sub-unit 632 provides the calculated nutrient feed rate to the corresponding control unit in the fermentor to control the nutrient feed rate in the fermentor, thereby controlling the specific growth rate of the cells.
- the present invention proposes an effective closed-loop feedback control scheme for nutrient feeding rate in a fermentation process, which can identify different fermentation periods and adopt different control algorithms for each fermentation period, thereby
- the nutrient feeding rate in different fermentation periods is always at an optimal value, and the accuracy of the feeding is ensured; moreover, the solution of the invention is simple to implement, convenient to popularize, and can be applied to various fermentation processes, such as Escherichia coli. , fermentation of yeast and animal cells, etc., and can significantly improve product quality and fermentation efficiency.
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Abstract
The present invention discloses a fermentation process controlling method, comprising determining the current stage of fermentation process based on the acquired measurement of cell characteristics, controlling nutrient feed rate in fermentation process on the basis of controlling algorithm corresponding to determined fermentation phase. The present invention also discloses a fermentation process controller. The controlling of nutrient feed rate can be accomplished accurately and conveniently by employing the method and the device defined in the present invention.
Description
说 明 书 一种发酵过程控制方法以及一种发酵过程控制器 技术领域 Description of a fermentation process control method and a fermentation process controller
本发明涉及发酵技术,特别涉及一种发酵过程控制方法和一种发酵过.一 控制器。 背景技术 The invention relates to a fermentation technology, in particular to a fermentation process control method and a fermentation process. Background technique
发酵是生物化学工程实现中的一个重要过程,发酵所得产品可被广泛地 应用于制药、 食品和饮料、 能源, 以及水处理等领域。 为了提高产量、 降低 成本以及更好地符合相应法规的要求, 通常需要对发酵过程进行自动化控 制。 但是, 由于发酵过程本身的复杂性, 发酵过程的自动化程度远不及化学 以及石化等过程。 Fermentation is an important process in the realization of biochemical engineering, and the products obtained by fermentation can be widely used in the fields of pharmaceuticals, food and beverages, energy, and water treatment. In order to increase production, reduce costs and better comply with the requirements of the relevant regulations, it is often necessary to automate the fermentation process. However, due to the complexity of the fermentation process itself, the degree of automation of the fermentation process is far less than that of chemical and petrochemical processes.
在发酵系统中, 发酵罐工作于分批补料发酵模式, 发酵罐上具有补 料管道、 在线传感器以及一些必要的控制环路。 In the fermentation system, the fermenter operates in a fed-batch fermentation mode with a feed line, on-line sensors, and some necessary control loops.
现有技术中, 通过分别采用相应的电极以及单、独的闭环反馈控制方 式, 已经能够实现对发酵过程中的常用参数的闭环控制, 这里所提到的 常用参数包括: 温度、 pH值以及溶氧等。 但是, 由于缺乏一些关键的生 物状态变量, 如单位体积内的生物质浓度以及营养物浓度等的在线测量 结果, 营养物补料过程 (通过为发酵罐提供营养物, 如葡萄糖或氮等来 促进细胞生长和代谢物的产生) 通常处于开环控制状态, 即通过手动或 根据预先确定的补料策略进行补料, 如线性补料或指数补料等。 In the prior art, closed-loop control of common parameters in the fermentation process has been achieved by using corresponding electrodes and single and unique closed-loop feedback control methods. The common parameters mentioned here include: temperature, pH, and dissolution. Oxygen, etc. However, due to the lack of some key biological state variables, such as online measurements of biomass concentration and nutrient concentration per unit volume, the nutrient feeding process (by promoting nutrients such as glucose or nitrogen for fermenters) Cell growth and metabolite production) are usually in open loop control, ie by manual or according to a predetermined feeding strategy, such as linear fed or exponential feeding.
研究显示, 发酵产品的质量与细胞的比生长速率等因素有关, 而细胞的 比生长速率又与营养物补料速率有关, 也就是说, 如果能够较好地控制营养 物补料速率, 则能够在很大程度上提高发酵产品质量。 为此, 现有技术中提 出了各种控制方法, 比如-
通过不断改变营养物补料速率来控制细胞的比生长速率, 其中, 营养物 补料速率为预先确定, 并按照连续函数的方式逐渐降低, 也就是说,.预先规 定好营养物补料速率的变化轨迹。 这种方法试图不通过反馈, 将细胞的比生 长速率控制到一个合适的点上, 但这种方法会受到外界干扰的严重影响, 因 为营养物补料速率的变化情况为预先规定好的, 一旦出现干扰, 实际变化情 况就会与所规定的情况出现偏差。 Studies have shown that the quality of the fermented product is related to factors such as the specific growth rate of the cells, and the specific growth rate of the cells is related to the nutrient feeding rate, that is, if the nutrient feeding rate can be well controlled, The quality of the fermented product is greatly improved. To this end, various control methods have been proposed in the prior art, such as - The specific growth rate of the cells is controlled by continuously changing the nutrient feeding rate, wherein the nutrient feeding rate is predetermined and gradually decreased according to a continuous function, that is, pre-specified nutrient feeding rate Change track. This method attempts to control the specific growth rate of the cells to a suitable point without feedback, but this method is severely affected by external disturbances, because the change in nutrient feed rate is pre-defined, once If there is interference, the actual change will deviate from the specified situation.
再比如,根据在线测量的发酵过程排放的尾气中的 co2含量计算比生长 速率, 通过调节碳源补料速率将比生长速率维持在一个稳定的水平上。 但该 方法需要依赖于在线测量的 co2含量, 噪声大, 易造成大的批次波动, 甚至 会造成补料错误。 发明内容 As another example, the specific growth rate is calculated based on the co 2 content in the exhaust gas discharged from the fermentation process measured online, and the specific growth rate is maintained at a stable level by adjusting the feed rate of the carbon source. However, this method needs to rely on the co 2 content measured online, which is large in noise, easily causes large batch fluctuations, and may even cause feeding errors. Summary of the invention
有鉴于此, 本发明的主要目的在于提供一种发酵过程控制方法, 能够准 确方便地实现对于营养物补料速率的控制。 In view of the above, it is a primary object of the present invention to provide a fermentation process control method capable of accurately and conveniently controlling the feed rate of nutrients.
本发明的另一目的在于提供一种发酵过程控制器, 能够准确方便地实现 对于营养物补料速率的控制。 Another object of the present invention is to provide a fermentation process controller that is capable of accurately and conveniently controlling the feed rate of nutrients.
为达到上述目的, 本发明的技术方案是这样实现的: In order to achieve the above object, the technical solution of the present invention is achieved as follows:
一种发酵过程控制方法, 包括: A fermentation process control method comprising:
基于获取到的细胞特征测量结果, 确定发酵过程当前所处发酵期; 按照与确定出的发酵期相对应的控制算法,对发酵过程中的营养物补料 速率进行控制。 Based on the obtained cell characteristic measurement results, the fermentation period currently in the fermentation process is determined; and the nutrient feeding rate in the fermentation process is controlled according to a control algorithm corresponding to the determined fermentation period.
较佳地, 所述基于获取到的细胞特征测量结果, 确定发酵过程当前所处 发酵期包括: Preferably, the determining, according to the obtained cell characteristic measurement result, that the fermentation period currently in the fermentation process comprises:
确定是否能够同时获取到细胞密度测量结果和细胞分布测量结果; 如果能够同时获取,则通过对细胞密度测量结果和细胞分布测量结果进 行三维空间跟踪分析来确定所述发酵过程当前所处发酵期;
如果只能获取到细胞密度测量结果,则通过对细胞密度测量结果进行趋 势分析来确定所述发酵过程当前所处发酵期。 Determining whether the cell density measurement result and the cell distribution measurement result can be simultaneously obtained; if it can be simultaneously acquired, determining the current fermentation period of the fermentation process by performing three-dimensional spatial tracking analysis on the cell density measurement result and the cell distribution measurement result; If only the cell density measurement results are obtained, the current fermentation period of the fermentation process is determined by trend analysis of the cell density measurement results.
较佳地,所述通过对细胞密度测量结果进行趋势分析来确定所述发酵过 程当前所处发酵期包括: Preferably, the trending analysis of the cell density measurement results to determine that the fermentation period currently in the fermentation process comprises:
从发酵过程开始时起, 将连续获取到的 A个指定时间点上的细胞密度 测量结果拟合成一条直线, 并得到拟合后的直线方程; From the beginning of the fermentation process, the cell density measurement results at a specified time point are continuously fitted to a straight line, and the fitted linear equation is obtained;
利用所述直线方程, 对在所述 A个指定时间点之后获取到的每个指定 时间点上的细胞密度测量结果进行校验, 计算获取到的每个指定时间点上的 细胞密度测量结果与利用所述直线方程计算出的该指定时间点上的细胞密 度测量结果的差值, 并将每个差值与预先设定的限制水平进行比较, 如果连 续 B个差值均大于所述限制水平,则确定当前所处发酵期已经从延迟期转移 到了指数生长期, 并将第一个大于所述限制水平的差值所对应的时间点确定 为拐点; Using the line equation, the cell density measurement results at each specified time point acquired after the A specified time points are verified, and the obtained cell density measurement results at each specified time point are calculated. Using the straight line equation to calculate a difference in cell density measurements at the specified time point, and comparing each difference with a predetermined limit level, if consecutive B differences are greater than the limit level , determining that the current fermentation period has been transferred from the delay period to the exponential growth period, and determining the time point corresponding to the first difference greater than the limit level as the inflection point;
从所述拐点开始, 将连续获取到的 C个指定时间点上的细胞密度测量 结果拟合成指数曲线, 并得到拟合后的指数方程; Starting from the inflection point, fitting the cell density measurement results of the C consecutively obtained time points to an exponential curve, and obtaining a fitted exponential equation;
利用所述指数方程, 对在所述 C 个指定时间点之后获取到的每个指定 时间点上的细胞密度测量结果进行校验,计算获取到的每个指定时间点上的 细胞密度测量结果与利用所述指数方程计算出的该指定时间点上的细胞密 度测量结果的差值, 并将每个差值与预先设定的限制水平进行比较, 如果连 续 D个差值均大于所述限制水平,则确定当前所处发酵期已经从指数生长期 转移到了平稳期; 所述 A、 B、 C、 D均为大于 1的正整数; Using the exponential equation, the cell density measurement results at each specified time point acquired after the C specified time points are verified, and the obtained cell density measurement results at each specified time point are calculated and Using the exponential equation to calculate a difference in cell density measurements at the specified time point, and comparing each difference to a predetermined limit level, if consecutive D differences are greater than the limit level , determining that the current fermentation period has shifted from the exponential growth phase to the stationary phase; the A, B, C, and D are positive integers greater than one;
或者,所述通过对细胞密度测量结果进行趋势分析来确定所述发酵过程 当前所处发酵期包括: Alternatively, the trending of the cell density measurement results to determine that the fermentation process currently in the fermentation period comprises:
从发酵过程开始时起,将连续获取到的 E组细胞密度测量结果分别拟合 成一条直线; 所述 E为大于 1的正整数; 其中, 每组细胞密度测量结果中包 括的细胞密度测量结果数相同;
并且, 在每完成一组细胞密度测量结果的拟合时, 将拟合后的直线的斜 率与预先设定的第一阈值进行比较,如果所述拟合后的直线的斜率大于所述 第一阈值,则确定当前所处发酵期已经从延迟期转移到了指数生长期;之后, 将根据下一组细胞密度测量结果拟合出的直线的斜率与预先设定的第二阈 值进行比较, 如果所述拟合后的直线的斜率小于所述第二阈值, 则确定当前 所处发酵期已经从指数生长期转移到了平稳期。 From the beginning of the fermentation process, the continuously obtained E group cell density measurement results are respectively fitted into a straight line; the E is a positive integer greater than 1; wherein, the cell density measurement results included in each group of cell density measurement results are included The same number; And, each time the fitting of the set of cell density measurement results is completed, comparing the slope of the fitted straight line with a preset first threshold value, if the slope of the fitted straight line is greater than the first Threshold, determining that the current fermentation period has been transferred from the delay period to the exponential growth phase; thereafter, comparing the slope of the line fitted according to the next set of cell density measurements with a predetermined second threshold, if The slope of the fitted straight line is less than the second threshold, and it is determined that the current fermentation period has shifted from the exponential growth phase to the stationary phase.
较佳地,所述通过对细胞密度测量结果和细胞分布测量结果进行三维空 间跟踪分析来确定所述发酵过程当前所处发酵期包括: Preferably, the three-dimensional spatial tracking analysis of the cell density measurement and the cell distribution measurement results to determine that the fermentation period currently in the fermentation process comprises:
从发酵过程开始时起,将获取到的每个指定时间点上的细胞分布测量结 果以及细胞密度测量结果绘制在三维空间中;所述细胞分布测量结果为大细 胞所占比例; From the beginning of the fermentation process, the obtained cell distribution measurement results and the cell density measurement results at each specified time point are plotted in a three-dimensional space; the cell distribution measurement results in a proportion of large cells;
从第二个指定时间点开始,计算每个指定时间点上的大细胞所占比例以 及细胞密度测量结果与前一指定时间点上的大细胞所占比例及细胞密度测 量结果的差值, 并将计算出的差值与预先设定的第一组合阈值进行比较, 如 果连续 F个差值均大于所述第一组合阈值,则确定当前所处发酵期已经从延 迟期转移到了指数生长期,并将第一个大于所述第一组合阈值的差值所对应 的时间点确定为拐点; Starting from the second specified time point, calculate the proportion of large cells at each specified time point and the difference between the cell density measurement and the ratio of large cells and cell density measurements at the previous specified time point, and Comparing the calculated difference with a preset first combined threshold, if the consecutive F differences are greater than the first combined threshold, determining that the current fermentation period has been transferred from the delay period to the exponential growth period, And determining a time point corresponding to the first difference greater than the first combination threshold as an inflection point;
从所述拐点开始,计算随后的每个指定时间点上的大细胞所占比例以及 细胞密度测量结果与前一指定时间点上的大细胞所占比例及细胞密度测量 结果的差值, 并将计算出的差值与预先设定的第二组合阈值进行比较, 如果 连续 G个差值均大于所述第二组合阈值,则确定当前所处发酵期已经从指数 生长期转移到了平稳期; 所述 F、 G均为大于 1的正整数。 Starting from the inflection point, calculating the ratio of the large cells at each specified time point and the difference between the cell density measurement and the ratio of the large cells at the previous specified time point and the cell density measurement, and The calculated difference is compared with a preset second combination threshold. If the consecutive G differences are greater than the second combined threshold, it is determined that the current fermentation period has been transferred from the exponential growth period to the stationary period; Both F and G are positive integers greater than one.
另外, 在基于获取到的细胞特征测量结果, 确定发酵过程当前所处发酵 期之前, 还可进一步包括: In addition, before determining the fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result, the method further includes:
对所述获取到的细胞特征测量结果进行预处理,识别出异常点并进行剔 除。
较佳地, 所述按照与确定出的发酵期相对应的控制算法, 对所述发酵过 程中的营养物补料速率进行控制包括: The obtained cell characteristic measurement result is preprocessed, the abnormal point is identified, and the culling is performed. Preferably, controlling the nutrient feeding rate in the fermentation process according to a control algorithm corresponding to the determined fermentation period comprises:
按照以下方式计算所述营养物补料速率: The nutrient feed rate was calculated as follows:
Fs (t) = Fs0(t) + Kc[e{t) + - [e{t)dt ; 所述 e(i) =〃- / F s (t) = F s0 (t) + K c [e{t) + - [e{t)dt ; the e(i) =〃- /
其中, 所述/表示利用获取到的细胞密度测量结果计算出的比生长速 率; 所述 ^表示比生长速率预定值; 所述 表示所述计算出的比生长速率 与所述比生长速率预定值 ^之间的差值; 所述 和^为可调参数; 所述 表示营养物补料速率; 所述 FQ( )表示前向反馈部分, 利用与确定出的 发酵期相对应的控制算法计算得出。 Wherein the / represents a specific growth rate calculated using the obtained cell density measurement result; the ^ represents a specific growth rate predetermined value; the indicating the calculated specific growth rate and the specific growth rate predetermined value The difference between ^; the sum is an adjustable parameter; the representation of the nutrient feed rate; the F Q ( ) represents the forward feedback portion, calculated using a control algorithm corresponding to the determined fermentation period inferred.
所述比生长速率/ i的计算方式包括: μ = -^ , 其中, 所述 表示细胞密度测量结果。 The calculation of the specific growth rate / i includes: μ = -^ , wherein the said cell density measurement result.
X dt X dt
所述前向反馈部分 FiQ(i)的计算方式包括: The calculation method of the forward feedback portion F iQ (i) includes:
当确定出的发酵期为延迟期时, 所述/ ^ (0 = ^ + ^(0 ; 其中, 所述 和 为可调参数; When the determined fermentation period is a delay period, the / ^ (0 = ^ + ^(0 ; wherein the sum is an adjustable parameter;
当确定出的发酵期为指数生长期时,所述 (^) = ^: ^2 ;其中,所述;^ 表示细胞密度测量结果, 所述^:为可调参数, 所述/ /ρ2表示指数生长期的比 生长速率预定值; When the determined fermentation period is an exponential growth phase, the (^) = ^: ^ 2 ; wherein; ^ represents a cell density measurement result, the ^: is an adjustable parameter, and the / / ρ2 represents a predetermined growth rate of the exponential growth phase;
当确定出的发酵期为平稳期时, 所述 ^^^α + Ζ^^^Γ - Ο 其中, 所述 α表示平稳期的初始营养物补料速率, 所述 为可调参数, 所述 ^3表 示平稳期的比生长速率预定值, 所述 表示细胞密度测量结果, 所述 ί2表示 平稳期的起始时刻, 所述 2表示 ί2时刻的细胞密度测量结果。 When the determined fermentation period is a stationary period, the ^^^α + Ζ^^^Γ - Ο wherein the α represents an initial nutrient feeding rate during the stationary period, the tunable parameter, ^ 3 denotes a predetermined value of the specific growth rate of the stationary period, the indicating the cell density measurement result, the ί 2 indicating the start time of the stationary period, and the 2 indicating the cell density measurement at the time ί 2 .
一种发酵过程控制器, 包括-
发酵期识别模块, 用于基于获取到的细胞特征测量结果, 确定发酵过程 当前所处发酵期; A fermentation process controller, including - a fermentation period identification module, configured to determine a fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result;
算法选择模块, 用于选择与确定出的发酵期相对应的控制算法; 控制算法模块, 用于根据所选择的控制算法, 对发酵过程中的营养物补 料速率进行控制。 An algorithm selection module is configured to select a control algorithm corresponding to the determined fermentation period; and a control algorithm module for controlling the nutrient feeding rate in the fermentation process according to the selected control algorithm.
较佳地, 所述发酵期识别模块包括: Preferably, the fermentation period identification module comprises:
数据预处理子模块, 用于对获取到的细胞特征测量结果进行预处理, 识 别出异常点并进行剔除; a data pre-processing sub-module, configured to pre-process the obtained cell characteristic measurement result, identify an abnormal point and perform culling;
确定子模块,用于确定获取到的细胞特征测量结果中只包括细胞密度测 量结果还是同时包括细胞密度测量结果和细胞分布测量结果, 并将确定结果 通知给趋势分析和发酵期识别子模块; Determining a sub-module for determining whether the obtained cell characteristic measurement result includes only the cell density measurement result or both the cell density measurement result and the cell distribution measurement result, and notifying the determination result to the trend analysis and the fermentation period identification sub-module;
所述趋势分析和发酵期识别子模块,用于当确定结果为获取到的细胞特 征测量结果中只包括细胞密度测量结果时,通过对细胞密度测量结果进行趋 势分析来确定所述发酵过程当前所处发酵期; 当确定结果为获取到的细胞特 征测量结果中同时包括细胞密度测量结果和细胞分布测量结果时, 通过对细 胞密度测量结果和细胞分布测量结果进行三维空间跟踪分析来确定所述发 酵过程当前所处发酵期。 The trend analysis and fermentation period identification sub-module is configured to determine a current state of the fermentation process by performing trend analysis on the cell density measurement result when the determination result includes only the cell density measurement result in the obtained cell characteristic measurement result. At the fermentation stage; when the result of the determination is that the obtained cell characteristic measurement result includes both the cell density measurement result and the cell distribution measurement result, the fermentation is determined by performing three-dimensional spatial tracking analysis on the cell density measurement result and the cell distribution measurement result. The process is currently in the fermentation period.
较佳地, 所述发酵过程控制器中进一步包括: Preferably, the fermentation process controller further includes:
推导模型模块, 用于利用获取到的细胞密度测量结果计算比生长速率 μ , μ = -—,所述 表示细胞密度测量结果, 并将计算出的比生长速率〃 Deriving a model module for calculating a specific growth rate μ, μ = -− using the obtained cell density measurement result, the said cell density measurement result, and calculating the specific growth rate〃
X dt X dt
提供给所述控制算法模块; Provided to the control algorithm module;
所述控制算法模块包括: The control algorithm module includes:
第一计算子模块,用于计算来自推导模型模块的比生长速率 与自身预 先保存的比生长速率预定值 之间的差值 ί); 根据确定出的发酵期不同, 所述/ ^的取值也将不同;
第二计算子单元, 用于按照以下方式计算所述营养物补料速率: a first calculation sub-module for calculating a difference between a specific growth rate from the derivation model module and a predetermined value of a pre-stored specific growth rate; 根据 according to the determined fermentation period, the value of the / ^ Will also be different; a second calculation subunit for calculating the nutrient feed rate in the following manner:
Fs (0 = Fs0 (t) + Kc [e(t) +丄 f e{t)dt]; 其中, 所述 ^和 为可调参数; 所述 表示营养物补料速率; 所述 。(0表示前向反馈部分; F s (0 = F s0 (t) + K c [e(t) + 丄fe{t)dt]; wherein, the sum is an adjustable parameter; the said represents a nutrient feeding rate; (0 indicates the forward feedback portion;
当所述确定出的发酵期为延迟期时, 所述 。(0 = ^ +^(0; 其中, 所述 和^为可调参数; When the determined fermentation period is a delay period, the said. (0 = ^ +^(0; where , and ^ are tunable parameters;
当所述确定出的发酵期为指数生长期时, 所述 ^W ^^ ; 其中, 所述 表示细胞密度测量结果, 所述 为可调参数, 所述 表示指数生长 期的比生长速率预定值; When the determined fermentation period is an exponential growth phase, the ^W ^^; wherein, the cell density measurement result, the adjustable parameter, the predetermined growth rate of the index growth period is a predetermined value ;
当所述确定出的发酵期为平稳期时, 所述 Do) = a + ^/>3( - ί2); 其 中,所述 α表示平稳期的初始营养物补料速率,所述 为可调参数,所述 3 表示平稳期的比生长速率预定值, 所述 表示细胞密度测量结果, 所述 ^表 示平稳期的起始时刻, 所述 ½表示 ί2时刻的细胞密度测量结果。 When the determined fermentation period is a stationary period, the D o) = a + ^ /> 3 ( - ί2 ) ; wherein the α represents an initial nutrient feeding rate during the stationary period, and the The parameter is adjusted, the 3 indicates a predetermined value of the specific growth rate of the stationary phase, the indicating the cell density measurement result, the ^ indicates the starting time of the stationary period, and the 1⁄2 indicates the cell density measurement at the time of ί 2 .
可见, 采用本发明的技术方案, 基于获取到的细胞特征测量结果, 识 别出发酵过程当前所处发酵期, 并针对不同的发酵期分别采用不同的控 制算法, 从而控制发酵过程中的营养物补料速率, 使得不同发酵期中的 营养物补料速率始终处于最优值, 保证了补料的准确性; 而且, 本发明 所述方案实现简单, 便于普及, 可应用于各种不同的发酵过程中, 比如 大肠杆菌、 酵母以及动物细胞的发酵等, 并且能够显著提高产品质量和 发酵效率。 附图说明 It can be seen that, by using the technical scheme of the invention, based on the obtained cell characteristic measurement results, the fermentation period currently in the fermentation process is identified, and different control algorithms are respectively adopted for different fermentation periods, thereby controlling the nutrient supplement in the fermentation process. The feed rate is such that the nutrient feeding rate in different fermentation periods is always at an optimal value, and the accuracy of the feeding is ensured; moreover, the solution of the invention is simple to implement, convenient to popularize, and can be applied to various fermentation processes. For example, E. coli, yeast, and fermentation of animal cells, etc., and can significantly improve product quality and fermentation efficiency. DRAWINGS
下面将通过参照附图详细描述本发明的优选实施例,使本领域的普通技 术人员更清楚本发明的上述及其它特征和优点, 附图中:
图 1为本发明发酵过程控制方法实施例的流程图; The above and other features and advantages of the present invention will become apparent to those skilled in the <RTIgt 1 is a flow chart of an embodiment of a fermentation process control method of the present invention;
图 2为现有发酵过程所包括的发酵期示意图; 2 is a schematic diagram of a fermentation period included in the existing fermentation process;
图 3为本发明实施例所述方法 1的实现原理示意图; 3 is a schematic diagram of an implementation principle of a method 1 according to an embodiment of the present invention;
图 4为本发明实施例所述方法 2的实现原理示意图; 4 is a schematic diagram of an implementation principle of a method 2 according to an embodiment of the present invention;
图 5为本发明实施例所述方法 3中的 3D空间示意图; FIG. 5 is a schematic diagram of a 3D space in the method 3 according to the embodiment of the present invention;
图 6为本发明发酵过程控制器实施例的组成结构示意图。 6 is a schematic structural view of an embodiment of a fermentation process controller of the present invention.
具体实施方式 detailed description
针对现有技术中存在的问题, 本发明提出一种全新的发酵过程控制 方法, 即利用获取到的细胞特征测量结果 (如细胞密度测量结果和细胞分 布测量结果), 确定发酵过程当前所处发酵期, 并针对确定出的不同发酵期 采用不同的控制算法,以便对发酵过程中的营养物补料速率进行控制。其中, 指数生长期和平稳期采用自适应控制方式。 In view of the problems existing in the prior art, the present invention proposes a novel fermentation process control method, which uses the obtained cell characteristic measurement results (such as cell density measurement results and cell distribution measurement results) to determine the fermentation process currently in the fermentation process. Period, and different control algorithms are used for the different fermentation periods determined to control the nutrient feeding rate during the fermentation process. Among them, the exponential growth period and the stationary period adopt adaptive control.
为了使本发明的目的、 技术方案及优点更加清楚明白, 以下结合附 图及实施例, 对本发明进行进一步详细说明。 应当理解, 此处所描述的 具体实施例仅仅用以解释本发明, 并不用于限定本发明。 In order to make the objects, the technical solutions and the advantages of the present invention more comprehensible, the present invention will be further described in detail below with reference to the accompanying drawings. It is understood that the specific embodiments described herein are merely illustrative of the invention and are not intended to limit the invention.
图 1 为本发明发酵过程控制方法实施例的流程图。 如图 1 所示, 包 括: 1 is a flow chart of an embodiment of a fermentation process control method of the present invention. As shown in Figure 1, it includes:
步骤 101 : 基于获取到的细胞特征测量结果, 确定发酵过程当前所处发 酵期。 Step 101: Determine the current fermentation period of the fermentation process based on the obtained cell characteristic measurement results.
图 2为现有发酵过程所包括的发酵期示意图。 如图 2所示, 对于一个完 整的发酵过程来说, 包括延迟期、 指数生长期、 平稳期以及死亡期共 4个不 同的发酵期。 由于在实际应用中, 通常在进入到死亡期之前, 就已经完成了 所需的发酵过程, 即已经得到了发酵产品, 因此, 本发明实施例中只介绍如 何确定延迟期、 指数生长期以及平稳期, 而不会涉及到死亡期。 Figure 2 is a schematic diagram of the fermentation period included in the existing fermentation process. As shown in Figure 2, for a complete fermentation process, there are four different fermentation periods, including the delay period, the exponential growth phase, the stationary phase, and the death phase. Since in practice, the required fermentation process is usually completed before entering the death period, that is, the fermented product has been obtained, therefore, only the delay period, the exponential growth period, and the smoothness are determined in the embodiment of the present invention. Period, and will not involve the death period.
细胞的特征, 如细胞密度和细胞分布, 能够表征不同发酵期中细胞本身
固有的生理学上的变化, 因此, 通过对细胞特征的测量结果进行分析, 即可 确定出不同的发酵期。 Cell characteristics, such as cell density and cell distribution, can characterize the cells themselves during different fermentation phases Inherent physiological changes, therefore, by analyzing the measurement of cell characteristics, different fermentation periods can be determined.
其中, 如果细胞密度测量结果和细胞分布测量结果均能正确获取, 则可通过对细胞密度测量结果和细胞分布测量结果进行三维空间跟踪分析 来确定不同发酵期, 具体实现如下面的方法 3所示; 如果不能正确获取到 细胞分布测量结果, 即只能获取到细胞密度测量结果, 则可通过对细胞密 度测量结果进行趋势分析来确定不同的发酵期, 具体实现如下面的方法 1或 Wherein, if the cell density measurement result and the cell distribution measurement result are correctly obtained, the three-dimensional spatial tracking analysis can be performed on the cell density measurement result and the cell distribution measurement result to determine different fermentation periods, and the specific implementation is as shown in the following method 3. If the cell distribution measurement result cannot be obtained correctly, that is, only the cell density measurement result can be obtained, the different fermentation period can be determined by performing trend analysis on the cell density measurement result, and the specific method is as follows:
2所示。 2 is shown.
方法 1 :通过对细胞密度测量结果进行变化趋势分析来确定不同发酵 期。 Method 1: Different fermentation periods were determined by trend analysis of cell density measurements.
首先, 对获取到的细胞密度测量结果进行预处理, 识别出异常点并进行 剔除, 如何进行预处理为现有技术, 不再赘述。然后, 从发酵过程开始时起, 将连续获取到的多个指定时间点上的细胞密度测量结果(比如 4个, 并且每 两个测量结果之间的测量时间间隔大于 2分钟)拟合成一条直线, 得到拟合 后的直线方程, 如何拟合为现有技术, 不再赘述。 另外, 上述细胞密度测量 结果通常是利用在线密度传感器测量得到的, 如果没有在线细胞密度传感 器, 也可通过脱机方式手动测量得到, 比如通过抽样, 或利用通过尾气分析 仪测量得到的 co2和 02浓度直接计算得到。 First, the obtained cell density measurement result is preprocessed, and the abnormal point is identified and rejected. How to perform preprocessing is a prior art, and will not be described again. Then, from the beginning of the fermentation process, the cell density measurement results (such as 4, and the measurement time interval between each two measurement results greater than 2 minutes) are continuously acquired at a plurality of specified time points. Straight line, get the fitted linear equation, how to fit into the existing technology, no longer repeat them. In addition, the above cell density measurement results are usually measured by an online density sensor. If there is no online cell density sensor, it can also be manually measured by offline method, such as by sampling, or by using the co 2 measured by the exhaust gas analyzer. The concentration of 0 2 is directly calculated.
然后, 利用拟合后的直线方程,对在上述 4个指定时间点之后获取到的 每个指定时间点上的细胞密度测量结果进行校验,计算实际获取到的每个指 定时间点上的细胞密度测量结果与利用拟合后的直线方程计算出的该指定 时间点上的细胞密度测量结果之间的差值, 并将每个差值与预先设定的限制 水平 (如在线密度传感器误差的两倍) 进行比较, 如果连续多个差值 (如 3 个)均大于该限制水平, 则确定当前所处发酵期已经从延迟期转移到了指数 生长期, 并将第一个大于限制水平的差值所对应的时间点确定为拐点。 Then, using the fitted linear equation, the cell density measurement results at each specified time point acquired after the above four specified time points are verified, and the cells actually obtained at each specified time point are calculated. The difference between the density measurement and the cell density measurement at the specified time point calculated using the fitted line equation, and each difference is a predetermined limit level (eg, the online density sensor error) Twice) For comparison, if multiple consecutive differences (such as 3) are greater than the limit level, it is determined that the current fermentation period has been transferred from the delay period to the exponential growth period, and the first difference is greater than the limit level. The time point corresponding to the value is determined as the inflection point.
上述指定时间点,是指假设在线密度传感器每三分钟输出一次细胞密度
测量结果, 那么可以将每个细胞密度测量结果均拿来使用, 也可以只使用其 中指定的某些细胞密度测量结果。 后续类似情况不再赘述。 The above specified time point refers to the assumption that the online density sensor outputs cell density every three minutes. Measurement results, then each cell density measurement can be used, or only some of the cell density measurements specified therein can be used. Subsequent similar situations will not be described again.
之后,从所确定的拐点开始,利用连续获取的多个指定时间点(如 4个) 上的细胞密度测量结果来拟合指数曲线, 得到拟合后的指数方程如下: Then, starting from the determined inflection point, the index curve is fitted by the cell density measurement results of a plurality of consecutively selected time points (eg, 4), and the fitted exponential equation is obtained as follows:
_y = a V + ( 。 (1 ) 然后, 利用拟合后的指数方程, 对随后获取到的每个指定时间点上的细 胞密度测量结果进行校验,计算获取到的每个指定时间点上的细胞密度测量 结果与利用拟合后的指数方程计算出的该指定时间点上的细胞密度测量结 果之间的差值, 并将每个差值与预先设定的限制水平(如在线密度传感器误 差的两倍)进行比较, 如果连续多个 (如 3个) 差值均大于限制水平, 则确 定当前所处发酵期己经从指数生长期转移到了平稳期。 _y = a V + ( (1) Then, using the fitted exponential equation, the cell density measurement results obtained at each specified time point are subsequently verified, and each of the obtained time points is calculated. The difference between the cell density measurement and the cell density measurement at the specified time point calculated using the fitted exponential equation, and each difference to a predetermined limit level (eg, an online density sensor) If the difference is twice (for example, three), the difference is greater than the limit level, then it is determined that the current fermentation period has been transferred from the exponential growth period to the stationary period.
图 3为本发明实施例所述方法 1 的实现原理示意图。 如图 3所示, 其中的虚线表示拟合出的直线, 表示拐点。 FIG. 3 is a schematic diagram of an implementation principle of the method 1 according to an embodiment of the present invention. As shown in Fig. 3, the dotted line indicates the fitted straight line, indicating the inflection point.
方法 2 :通过对细胞密度测量结果进行斜率变化趋势分析来确定不同 发酵期。 Method 2: Determine the different fermentation periods by performing a slope change trend analysis on the cell density measurement results.
该方法中,连续地使用固定间隔测量的移动窗口对细胞密度测量结果进 行直线拟合。 即: 从发酵过程开始时起, 将连续获取到的多组细胞密度测量 结果分别拟合成一条直线, 每一组中均包括相同个数的(比如 4个)细胞密 度测量结果 (每两个测量结果之间的测量时间间隔大于 2分钟)。 在实际应 用中, 假设在线密度传感器测量得到了 12个细胞密度测量结果, 按照时间 递增顺序分别编号为 1〜12, 那么可以将 1〜4作为第一组, 将 5〜8作为第 二组, 9〜12作为第三组; 或者, 也可以将 1〜4作为第一组, 然后隔两个点 之后, 将 7〜10作为第二组, 总之, 具体分组方式不限。 In this method, the cell density measurement results are linearly fitted continuously using a moving window measured at a fixed interval. That is: from the beginning of the fermentation process, the continuously acquired sets of cell density measurements are respectively fitted into a straight line, each group including the same number of (for example, 4) cell density measurements (every two The measurement interval between measurement results is greater than 2 minutes). In practical applications, it is assumed that the online density sensor measures 12 cell density measurements, which are numbered 1 to 12 in order of increasing time, then 1 to 4 can be used as the first group, and 5 to 8 can be used as the second group. 9 to 12 as the third group; or, 1 to 4 may be used as the first group, and then after 2 points, 7 to 10 are taken as the second group. In short, the specific grouping manner is not limited.
在每完成一组细胞密度测量结果的拟合时,将拟合后的直线的斜率与预 先设定的第一阈值进行比较, 如果拟合后的直线的斜率大于该第一阈值, 则 确定当前所处发酵期己经从延迟期转移到了指数生长期; 之后, 将根据下一
组细胞密度测量结果拟合出的直线的斜率与预先设定的第二阈值进行比较, 如果拟合后的直线的斜率小于第二阈值, 则确定当前所处发酵期已经从指数 生长期转移到了平稳期。 The slope of the fitted straight line is compared with a preset first threshold value each time a fitting of a set of cell density measurement results is completed, and if the slope of the fitted straight line is greater than the first threshold value, determining the current The fermentation period has been transferred from the delay period to the exponential growth phase; after that, it will be based on the next The slope of the line fitted by the group cell density measurement is compared with a preset second threshold. If the slope of the fitted line is less than the second threshold, it is determined that the current fermentation period has been transferred from the exponential growth period. Smooth period.
图 4为本发明实施例所述方法 2的实现原理示意图。 如图 4所示, 其中的虚线 1 表示当发酵过程处于延迟期时拟合出的直线, 虚线 2表示 第一阈值, 虚线 3 表示已经从延迟期转移到了指数生长期后拟合出的直 线, ^表示拐点。 FIG. 4 is a schematic diagram of an implementation principle of a method 2 according to an embodiment of the present invention. As shown in FIG. 4, a broken line 1 indicates a straight line fitted when the fermentation process is in a delay period, a broken line 2 indicates a first threshold, and a broken line 3 indicates a straight line that has been fitted after a transition from a delay period to an exponential growth period. ^ indicates the inflection point.
方法 3 : 通过对细胞密度测量结果和细胞分布测量结果进行 3D空间 跟踪分析来确定不同的发酵期。 Method 3: Different fermentation periods were determined by 3D spatial tracking analysis of cell density measurements and cell distribution measurements.
在发酵过程中, 在延迟期, 由于细胞正在适应新环境并开始发育, 因 此大细胞所占比例将下降; 当进入指数生长期后, 由于细胞迅速分裂, 因此 大细胞所占比例将逐渐上升, 而且, 当指数生长期即将结束时, 大细胞所占 比例将达到最大值; 在平稳期, 细胞生长速率近似等于细胞死亡速率, 大细 胞所占比例将开始下降。 因此, 通过对大细胞所占比例以及细胞密度的变化 情况进行分析, 即可确定出不同的发酵期。 具体实现包括: During the fermentation process, during the delay period, as the cells are adapting to the new environment and begin to develop, the proportion of large cells will decrease. After entering the exponential growth phase, the proportion of large cells will gradually increase due to the rapid division of cells. Moreover, when the exponential growth phase is about to end, the proportion of large cells will reach a maximum; in the stationary phase, the cell growth rate is approximately equal to the cell death rate, and the proportion of large cells will begin to decrease. Therefore, by analyzing the proportion of large cells and the changes in cell density, different fermentation periods can be determined. Specific implementations include:
首先, 从发酵过程开始时起, 将获取到的每个指定时间点上的大细胞所 占比例以及细胞密度测量结果绘制在 3D空间中。 如图 5所示, 图 5为本发 明实施例所述方法 3中的 3D空间示意图。 First, from the beginning of the fermentation process, the proportion of large cells obtained at each specified time point and the cell density measurement are plotted in the 3D space. As shown in FIG. 5, FIG. 5 is a schematic diagram of a 3D space in the method 3 according to the embodiment of the present invention.
从第二个时间点开始,计算每个指定时间点上的大细胞所占比例和细胞 密度测量结果与前一指定时间点上的大细胞所占比例及细胞密度测量结果 的差值, 并将计算出的差值与预先设定的第一组合阈值进行比较; 显然, 在 3D 空间中, 计算出的大细胞所占比例以及细胞密度测量结果的差值将为一 个矢量, 而第一组合阈值也是一个矢量; 如果连续多个差值(比如 3个)均 大于该第一组合阈值, 则确定当前所处发酵期已经从延迟期转移到了指数生 长期, 并将第一个大于第一组合阈值的差值所对应的时间点确定为拐点。 From the second time point, calculate the difference between the proportion of large cells at each specified time point and the difference between the cell density measurement and the ratio of large cells at the previous specified time point and the cell density measurement, and The calculated difference is compared with a preset first combined threshold; obviously, in 3D space, the calculated difference between the proportion of large cells and the cell density measurement will be a vector, and the first combined threshold Is also a vector; if a plurality of consecutive differences (such as 3) are greater than the first combined threshold, it is determined that the current fermentation period has been transferred from the delay period to the exponential growth period, and the first one is greater than the first combined threshold The time point corresponding to the difference is determined as the inflection point.
然后, 从拐点开始, 计算随后的每个指定时间上的大细胞所占比例和细
胞密度测量结果与前一时间点上的大细胞所占比例及细胞密度测量结果的 差值, 并将计算出的差值与预先设定的第二组合阈值进行比较, 如果连续多 个(比如 3个)差值均大于该第二组合阈值, 则确定当前所处发酵期已经从 指数生长期转移到了平稳期。 Then, starting from the inflection point, calculate the proportion and size of the large cells at each specified time The difference between the cell density measurement and the ratio of the large cells at the previous time point and the cell density measurement, and compares the calculated difference with a preset second combination threshold, if multiple consecutive (eg If the difference is greater than the second combined threshold, it is determined that the current fermentation period has shifted from the exponential growth phase to the stationary phase.
步骤 102: 计算比生长速率。 Step 102: Calculate the specific growth rate.
本实施例中,可利用细胞密度测量结果来计算比生长速率/,如下所示: In this embodiment, the cell density measurement can be used to calculate the specific growth rate / as follows:
1 dX; , μ = "、) 1 dX; , μ = ",)
X dt X dt
其中, 表示细胞密度测量结果, 或称为单位体积内的生物质浓度。 步骤 103 : 利用计算出的比生长速率, 按照与确定出的发酵期相对应的 控制算法, 对发酵过程中的营养物补料速率进行控制。 Where, it represents the measurement of cell density, or the concentration of biomass in a unit volume. Step 103: Using the calculated specific growth rate, the nutrient feeding rate in the fermentation process is controlled according to a control algorithm corresponding to the determined fermentation period.
在不同的发酵期中, 细胞所需的营养物是不同的, 比如: 在延迟期, 细 胞需要适应新的环境, 生长缓慢, 所以所需的营养物较少; 在指数生长期, 细胞进入指数分裂阶段, 需要充足的营养物供给; 在平稳期, 细胞生长速率 近似等于细胞死亡速率, 总的细胞数量不会增加, 因此所消耗的营养物也会 减少。 由于发酵过程的复杂性和非线性, 因此不适合在整个发酵过程中均采 用单一的控制算法。 In different fermentation periods, the nutrients required by the cells are different, for example: During the lag phase, the cells need to adapt to the new environment, grow slowly, so less nutrients are needed; in the exponential growth phase, the cells enter the exponential division. At the stage, sufficient nutrient supply is required; during the stationary phase, the cell growth rate is approximately equal to the cell death rate, and the total cell number does not increase, so the nutrients consumed are also reduced. Due to the complexity and non-linearity of the fermentation process, it is not suitable to use a single control algorithm throughout the fermentation process.
本发明实施例中, 针对不同的发酵期, 分别采用不同的控制算法, 以便 有效地对发酵过程中的营养物补料速率进行控制。 具体来说, 可通过前向反 馈或后向反馈控制算法, 来控制营养物补料速率, 如下所示:
In the embodiment of the present invention, different control algorithms are respectively adopted for different fermentation periods, so as to effectively control the nutrient feeding rate in the fermentation process. Specifically, the nutrient feed rate can be controlled by forward feedback or backward feedback control algorithms as follows:
其中, //表示步骤 102 中计算出的比生长速率; / i/7表示比生长速率预 定值(当发酵期不同时, 该值的具体取值也将不同); 0表示计算出的比生 长速率与所述比生长速率预定值之间的差值; ^和 为可调参数; 表
示营养物补料速率; 。 (0表示前向反馈部分。 Wherein // represents the specific growth rate calculated in step 102; / i/7 represents a predetermined specific growth rate value (when the fermentation period is different, the specific value of the value will also be different); 0 represents the calculated specific growth a difference between the rate and the predetermined value of the specific growth rate; ^ and tunable parameters; Show nutrient feed rate; (0 indicates the forward feedback portion.
对应不同的发酵期, FiQ(i)的具体计算方式也将不同, 比如- 在延迟期, 的计算方式为: The specific calculation method of F iQ (i) will also be different for different fermentation periods, for example - in the delay period, the calculation method is:
Fs0(t) = ki +k2(t); (5) 其中, 和 为可调参数。 F s0 (t) = k i + k 2 (t); (5) where , and is an adjustable parameter.
在指数生长期, FQ( )的计算方式为: In the exponential growth phase, F Q ( ) is calculated as:
Fs。^) splX', (6) 其中, 表示细胞密度测量结果, A为可调参数, 表示指数生长期 的比生长速率预定值。 F s . ^) spl X', (6) where, represents the cell density measurement, and A is a tunable parameter, indicating a predetermined growth rate for the exponential growth phase.
可以看出, iQ( )的取值将根据细胞密度测量结果的改变而进行自适应 在平稳期, 的计算方式为: It can be seen that the value of iQ ( ) will be adaptive in the stationary period according to the change of cell density measurement results, which is calculated as:
^0(ί)^α + βμψ3(Χ-Χί2); (7) 其中, 《表示平稳期的初始营养物补料速率, 等同于指数生长期结束时 的营养物补料速率, 即 A 2 , 2; 为可调参数, 3表示平稳期的比生长速 率预定值, 表示细胞密度测量结果, 2表示平稳期的起始时刻, 2表示 2 时刻的细胞密度测量结果。 同样, 可以看出, 。()的取值将根据细胞密度 测量结果的改变而进行自适应调整。 ^ 0 (ί) ^ α + βμ ψ3 (Χ-Χ ί2); (7) where, "a plateau represents the initial nutrient feed rate, equivalent to the nutrient feed rate at the end of the exponential growth phase, i.e., A 2 , 2; is an adjustable parameter, 3 represents a predetermined value of the specific growth rate of the stationary phase, represents a cell density measurement result, 2 represents a start time of the stationary phase, and 2 represents a cell density measurement result at 2 o'clock. Again, you can see that. The value of () will be adaptively adjusted based on changes in cell density measurements.
需要说明的是,上述实施例中涉及到的阈值以及可调参数等的具体取值 均可根据实际需要而定。 另外, 本发明所述方案还可扩展到针对其它方面的 控制, 比如溶氧等。 It should be noted that the specific values of the threshold and the adjustable parameters and the like involved in the above embodiments may be determined according to actual needs. In addition, the solution of the present invention can be extended to control other aspects, such as dissolved oxygen.
基于上述方法, 图 6 为本发明发酵过程控制器实施例的组成结构示意 图。 如图 6所示, 包括: Based on the above method, Fig. 6 is a schematic diagram showing the composition of the embodiment of the fermentation process controller of the present invention. As shown in Figure 6, it includes:
发酵期识别模块 61, 用于基于获取到的细胞特征测量结果, 确定发酵 过程当前所处发酵期;
算法选择模块 62, 用于选择与确定出的发酵期相对应的控制算法; 控制算法模块 63, 用于根据所选择的控制算法, 对发酵过程中的营养 物补料速率进行控制。 a fermentation period identification module 61, configured to determine a fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result; The algorithm selection module 62 is configured to select a control algorithm corresponding to the determined fermentation period; and the control algorithm module 63 is configured to control the nutrient feeding rate in the fermentation process according to the selected control algorithm.
其中, 发酵期识别模块 61中包括: The fermentation period identification module 61 includes:
数据预处理子模块 611,用于对获取到的细胞特征测量结果进行预处理, 识别出异常点并进行剔除; The data preprocessing sub-module 611 is configured to preprocess the obtained cell characteristic measurement result, identify the abnormal point and perform the culling;
确定子模块 612, 用于确定获取到的细胞特征测量结果中只包括细胞密 度测量结果还是同时包括细胞密度测量结果和细胞分布测量结果, 并将确定 结果通知给趋势分析和发酵期识别子模块 613 ; The determining sub-module 612 is configured to determine whether the acquired cell characteristic measurement result includes only the cell density measurement result or both the cell density measurement result and the cell distribution measurement result, and notify the trend analysis and the fermentation period identification sub-module 613 of the determination result. ;
趋势分析和发酵期识别子模块 613, 用于当确定结果为获取到的细胞特 征测量结果中只包括细胞密度测量结果时,通过对细胞密度测量结果进行趋 势分析来确定发酵过程当前所处发酵期; 当确定结果为获取到的细胞特征测 量结果中同时包括细胞密度测量结果和细胞分布测量结果时,通过对细胞密 度测量结果和细胞分布测量结果进行三维空间跟踪分析来确定发酵过程当 前所处发酵期。 The trend analysis and fermentation period identification sub-module 613 is configured to determine the current fermentation period of the fermentation process by performing trend analysis on the cell density measurement result when the determination result includes only the cell density measurement result in the obtained cell characteristic measurement result. When the result of the determination is that the acquired cell characteristic measurement results include both the cell density measurement result and the cell distribution measurement result, the three-dimensional spatial tracking analysis of the cell density measurement result and the cell distribution measurement result is used to determine the fermentation currently in the fermentation process. period.
另外, 图 6所示发酵过程控制器中还可进一步包括: In addition, the fermentation process controller shown in FIG. 6 may further include:
推导模型模块 64, 用于利用获取到的细胞密度测量结果计算比生长速 率/, / = -—, X表示细胞密度测量结果, 并将计算出的比生长速率 提 The derivation model module 64 is configured to calculate the specific growth rate using the obtained cell density measurement result, / = - -, X represents the cell density measurement result, and the calculated specific growth rate is
X dt X dt
供给控制算法模块 63 ; Supply control algorithm module 63;
控制算法模块 63包括: The control algorithm module 63 includes:
第一计算子模块 631,用于计算来自推导模型模块 64的比生长速率 μ与 自身预先保存的比生长速率预定值 ΑΡ之间的差值 根据确定出的发酵期 不同, 的取值也将不同; The first calculation sub-module 631 is configured to calculate a difference between the specific growth rate μ from the derivation model module 64 and a predetermined growth rate predetermined value Α 自身 of the pre-preserved according to the determined fermentation period, and the value will also be different;
第二计算子单元 632, 用于按照以下方式计算营养物补料速率:
Fs(t) = Fs0(t) + Kc[e(t) + - [ t)dt]; (3) 其中, ^和^为可调参数; )表示营养物补料速率; 。(0表示前向 反馈部分; A second calculation subunit 632 for calculating a nutrient feed rate as follows: F s (t) = F s0 (t) + K c [e(t) + - [ t)dt]; (3) where ^ and ^ are tunable parameters; ) indicates the nutrient feed rate; (0 indicates the forward feedback portion;
当确定出的发酵期为延迟期时, 。 ( = +^(0; (5) 其中, 和 为可调参数; When the determined fermentation period is a delay period, ( = +^(0; (5) where , and are tunable parameters;
当确定出的发酵期为指数生长期时, F ^k ^X', (6) 其中, 表示细胞密度测量结果, A为可调参数, 表示指数生长期 的比生长速率预定值; When the determined fermentation period is the exponential growth phase, F ^k ^X', (6) where, represents the cell density measurement result, and A is an adjustable parameter, indicating a predetermined growth rate of the exponential growth phase;
当确定出的发酵期为平稳期时, 。() = α + ^ 3( - ¾); (7) 其中, α表示平稳期的初始营养物补料速率, 为可调参数, ^表示 平稳期的比生长速率预定值, 表示细胞密度测量结果, ^表示平稳期的起 始时刻, ,2表示 ί2时刻的细胞密度测量结果。 When the determined fermentation period is a stationary period, () = Α + ^ 3 ( - ¾); (7) where, [alpha] represents a plateau of initial nutrient feed rate, adjustable parameters, ^ represents the growth rate than the predetermined value stationary phase, represents the cell density measurement , ^ indicates the start time of the stationary period, and 2 indicates the cell density measurement at time ί 2 .
第二计算子单元 632 将计算出的营养物补料速率提供给发酵罐中的相 应控制单元, 以控制发酵罐中的营养物补料速率, 进而控制细胞的比生长速 率。 The second calculation sub-unit 632 provides the calculated nutrient feed rate to the corresponding control unit in the fermentor to control the nutrient feed rate in the fermentor, thereby controlling the specific growth rate of the cells.
图 6所示发酵过程控制器实施例的具体工作流程请参照图 1所示方法实 施例中的相应说明, 此处不再赘述。 For the specific working process of the embodiment of the fermentation process controller shown in Fig. 6, please refer to the corresponding description in the embodiment of the method shown in Fig. 1, and details are not described herein again.
总之, 本发明中提出了一种对发酵过程中的营养物补料速率进行有 效闭环反馈控制方案, 该方案能够识别出不同的发酵期, 并针对每个发 酵期分别采用不同的控制算法, 从而使得不同发酵期中的营养物补料速 率始终处于最优值, 保证了补料的准确性; 而且, 本发明所述方案实现 简单, 便于普及, 可应用于各种不同的发酵过程, 比如大肠杆菌、 酵母 以及动物细胞的发酵等, 并且能够显著提高产品质量和发酵效率。 In summary, the present invention proposes an effective closed-loop feedback control scheme for nutrient feeding rate in a fermentation process, which can identify different fermentation periods and adopt different control algorithms for each fermentation period, thereby The nutrient feeding rate in different fermentation periods is always at an optimal value, and the accuracy of the feeding is ensured; moreover, the solution of the invention is simple to implement, convenient to popularize, and can be applied to various fermentation processes, such as Escherichia coli. , fermentation of yeast and animal cells, etc., and can significantly improve product quality and fermentation efficiency.
需要说明的是, 上述实施例仅用于举例说明, 并不用于限制本发明的技
术方案。凡在本发明的精神和原则之内所作的任何修改、等同替换和改进等, 均应包含在本发明的保护范围之内。
It should be noted that the foregoing embodiments are for illustrative purposes only and are not intended to limit the techniques of the present invention. Program. Any modifications, equivalent substitutions and improvements made within the spirit and scope of the invention are intended to be included within the scope of the invention.
Claims
1、 一种发酵过程控制方法, 其特征在于, 该方法包括- 基于获取到的细胞特征测量结果, 确定发酵过程当前所处发酵期; 按照与确定出的发酵期相对应的控制算法,对发酵过程中的营养物补料 速率进行控制。 A fermentation process control method, characterized in that the method comprises: determining a fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result; and controlling the fermentation according to a control algorithm corresponding to the determined fermentation period The nutrient feed rate during the process is controlled.
2、 根据权利要求 1所述的发酵过程控制方法, 其特征在于, 所述基于 获取到的细胞特征测量结果, 确定发酵过程当前所处发酵期包括: 2. The fermentation process control method according to claim 1, wherein the determining the fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result comprises:
确定是否能够同时获取到细胞密度测量结果和细胞分布测量结果; 如果能够同时获取,则通过对细胞密度测量结果和细胞分布测量结果进 行三维空间跟踪分析来确定所述发酵过程当前所处发酵期; Determining whether the cell density measurement result and the cell distribution measurement result can be simultaneously obtained; if it can be simultaneously acquired, determining the current fermentation period of the fermentation process by performing three-dimensional spatial tracking analysis on the cell density measurement result and the cell distribution measurement result;
如果只能获取到细胞密度测量结果,则通过对细胞密度测量结果进行趋 势分析来确定所述发酵过程当前所处发酵期。 If only the cell density measurement results are obtained, the current fermentation period of the fermentation process is determined by performing a trend analysis on the cell density measurement results.
3、 根据权利要求 2所述的发酵过程控制方法, 其特征在于, 所述通过 对细胞密度测量结果进行趋势分析来确定所述发酵过程当前所处发酵期包 括: The fermentation process control method according to claim 2, wherein the determining the fermentation period currently in the fermentation process by performing trend analysis on the cell density measurement results includes:
从发酵过程开始时起, 将连续获取到的 A个指定时间点上的细胞密度 测量结果拟合成一条直线, 并得到拟合后的直线方程; From the beginning of the fermentation process, the cell density measurement results at a specified time point are continuously fitted to a straight line, and the fitted linear equation is obtained;
利用所述直线方程, 对在所述 A个指定时间点之后获取到的每个指定 时间点上的细胞密度测量结果进行校验,计算获取到的每个指定时间点上的 细胞密度测量结果与利用所述直线方程计算出的该指定时间点上的细胞密 度测量结果的差值, 并将每个差值与预先设定的限制水平进行比较, 如果连 续 B个差值均大于所述限制水平,则确定当前所处发酵期已经从延迟期转移 到了指数生长期, 并将第一个大于所述限制水平的差值所对应的时间点确定 为拐点; Using the line equation, the cell density measurement results at each specified time point acquired after the A specified time points are checked, and the obtained cell density measurement results at each specified time point are calculated. Using the straight line equation to calculate a difference in cell density measurements at the specified time point, and comparing each difference with a predetermined limit level, if consecutive B differences are greater than the limit level , determining that the current fermentation period has been transferred from the delay period to the exponential growth period, and determining the time point corresponding to the first difference greater than the limit level as the inflection point;
从所述拐点开始, 将连续获取到的 C个指定时间点上的细胞密度测量 结果拟合成指数曲线, 并得到拟合后的指数方程;
利用所述指数方程, 对在所述 c 个指定时间点之后获取到的每个指定 时间点上的细胞密度测量结果进行校验,计算获取到的每个指定时间点上的 细胞密度测量结果与利用所述指数方程计算出的该指定时间点上的细胞密 度测量结果的差值, 并将每个差值与预先设定的限制水平进行比较, 如果连 续 D个差值均大于所述限制水平,则确定当前所处发酵期己经从指数生长期 转移到了平稳期; 所述 A、 B、 C、 D均为大于 1的正整数。 Starting from the inflection point, fitting the cell density measurement results of the C consecutively obtained time points to an exponential curve, and obtaining a fitted exponential equation; Using the exponential equation, the cell density measurement results at each specified time point acquired after the c specified time points are verified, and the obtained cell density measurement results at each specified time point are calculated and Using the exponential equation to calculate a difference in cell density measurements at the specified time point, and comparing each difference to a predetermined limit level, if consecutive D differences are greater than the limit level , it is determined that the current fermentation period has been transferred from the exponential growth phase to the stationary phase; the A, B, C, and D are positive integers greater than one.
4、 根据权利要求 2所述的发酵过程控制方法, 其特征在于, 所述通过 对细胞密度测量结果进行趋势分析来确定所述发酵过程当前所处发酵期包 括: The fermentation process control method according to claim 2, wherein the determining the fermentation period currently in the fermentation process by performing trend analysis on the cell density measurement results includes:
从发酵过程开始时起,将连续获取到的 E组细胞密度测量结果分别拟合 成一条直线; 所述 E为大于 1的正整数; 其中, 每组细胞密度测量结果中包 括的细胞密度测量结果数相同; From the beginning of the fermentation process, the continuously obtained E group cell density measurement results are respectively fitted into a straight line; the E is a positive integer greater than 1; wherein, the cell density measurement results included in each group of cell density measurement results are included The same number;
并且, 在每完成一组细胞密度测量结果的拟合时, 将拟合后的直线的斜 率与预先设定的第一阈值进行比较,如果所述拟合后的直线的斜率大于所述 第一阈值,则确定当前所处发酵期已经从延迟期转移到了指数生长期;之后, 将根据下一组细胞密度测量结果拟合出的直线的斜率与预先设定的第二阈 值进行比较, 如果所述拟合出的直线的斜率小于所述第二阈值, 则确定当前 所处发酵期已经从指数生长期转移到了平稳期。 And, each time the fitting of the set of cell density measurement results is completed, comparing the slope of the fitted straight line with a preset first threshold value, if the slope of the fitted straight line is greater than the first Threshold, determining that the current fermentation period has been transferred from the delay period to the exponential growth phase; thereafter, comparing the slope of the line fitted according to the next set of cell density measurements with a predetermined second threshold, if If the slope of the fitted straight line is less than the second threshold, it is determined that the current fermentation period has shifted from the exponential growth phase to the stationary phase.
5、 根据权利要求 2所述的发酵过程控制方法, 其特征在于, 所述通过 对细胞密度测量结果和细胞分布测量结果进行三维空间跟踪分析来确定所 述发酵过程当前所处发酵期包括: The fermentation process control method according to claim 2, wherein the determining the fermentation period currently in the fermentation process by performing three-dimensional spatial tracking analysis on the cell density measurement result and the cell distribution measurement result comprises:
从发酵过程开始时起,将获取到的每个指定时间点上的细胞分布测量结 果以及细胞密度测量结果绘制在三维空间中;所述细胞分布测量结果为大细 胞所占比例; From the beginning of the fermentation process, the obtained cell distribution measurement results and the cell density measurement results at each specified time point are plotted in a three-dimensional space; the cell distribution measurement results in a proportion of large cells;
从第二个指定时间点开始,计算每个指定时间点上的大细胞所占比例以 及细胞密度测量结果与前一指定时间点上的大细胞所占比例及细胞密度测
量结果的差值, 并将计算出的差值与预先设定的第一组合阈值进行比较, 如 果连续 F个差值均大于所述第一组合阈值,则确定当前所处发酵期已经从延 迟期转移到了指数生长期, 并将第一个大于所述第一组合阈值的差值所对应 的时间点确定为拐点; From the second specified time point, calculate the proportion of large cells at each specified time point and the ratio of cell density measurement to large cells at the previous specified time point and cell density measurement The difference between the quantity results, and comparing the calculated difference with a preset first combination threshold, if the consecutive F differences are greater than the first combination threshold, determining that the current fermentation period has been delayed The period is transferred to the exponential growth period, and the time point corresponding to the first difference larger than the first combination threshold is determined as an inflection point;
从所述拐点开始,计算随后的每个指定时间点上的大细胞所占比例以及 细胞密度测量结果与前一指定时间点上的大细胞所占比例及细胞密度测量 结果的差值, 并将计算出的差值与预先设定的第二组合阈值进行比较, 如果 连续 G个差值均大于所述第二组合阈值,则确定当前所处发酵期已经从指数 生长期转移到了平稳期; 所述 F、 G均为大于 1的正整数。 Starting from the inflection point, calculating the ratio of the large cells at each specified time point and the difference between the cell density measurement and the ratio of the large cells at the previous specified time point and the cell density measurement, and The calculated difference is compared with a preset second combination threshold. If the consecutive G differences are greater than the second combined threshold, it is determined that the current fermentation period has been transferred from the exponential growth period to the stationary period; Both F and G are positive integers greater than one.
6、根据权利要求 1〜5中任一项所述的发酵过程控制方法,其特征在于, 所述基于获取到的细胞特征测量结果, 确定发酵过程当前所处发酵期之前, 进一步包括: The fermentation process control method according to any one of claims 1 to 5, wherein the determining, based on the obtained cell characteristic measurement result, the fermentation period currently in the fermentation process, further comprises:
对所述获取到的细胞特征测量结果进行预处理,识别出异常点并进行剔 除。 The obtained cell characteristic measurement result is preprocessed, and an abnormal point is identified and rejected.
7、根据权利要求 1〜5中任一项所述的发酵过程控制方法,其特征在于, 所述按照与确定出的发酵期相对应的控制算法,对所述发酵过程中的营养物 补料速率进行控制包括: The fermentation process control method according to any one of claims 1 to 5, wherein the feeding of nutrients in the fermentation process is performed according to a control algorithm corresponding to the determined fermentation period Rate control includes:
按照以下方式计算所述营养物补料速率: The nutrient feed rate was calculated as follows:
Fs(t) = Fs0(t) + Kc[e(t) +丄 ]; 所述6(0 = / - /^; F s (t) = F s0 (t) + K c [e(t) +丄]; the 6(0 = / - /^;
其中, 所述 i表示利用获取到的细胞密度测量结果计算出的比生长速 率; 所述/ 表示比生长速率预定值; 所述 表示所述计算出的比生长速率 与所述比生长速率预定值 ^之间的差值; 所述 /^和 为可调参数; 所述 (ί)表示营养物补料速率; 所述/ ^。( )表示前向反馈部分, 利用与确定出的 发酵期相对应的控制算法计算得出。
Wherein the i represents a specific growth rate calculated using the obtained cell density measurement result; the / represents a specific growth rate predetermined value; the indicating the calculated specific growth rate and the specific growth rate predetermined value The difference between ^; the /^ sum is an adjustable parameter; the (ί) represents the nutrient feed rate; the / ^. ( ) indicates the forward feedback portion, which is calculated using a control algorithm corresponding to the determined fermentation period.
8、 根据权利要求 7所述的发酵过程控制方法, 其特征在于, 所述比生 长速率/的计算方式包括: 8. The fermentation process control method according to claim 7, wherein the calculation method of the specific growth rate/includes:
= 其中, 所述 表示细胞密度测量结果。 = where the said is the cell density measurement.
X dt X dt
9、 根据权利要求 7所述的方法, 其特征在于, 所述前向反馈部分 ^。(ί) 的计算方式包括: 9. The method according to claim 7, wherein the forward feedback portion ^. The calculation of (ί) includes:
当确定出的发酵期为延迟期时, 所述 。( = + 2(0;其中, 所述 和 为可调参数; When the determined fermentation period is a delay period, the said. ( = + 2 (0; where the sum is an adjustable parameter;
当确定出的发酵期为指数生长期时,所述 /^ί)=^ρ2 ;其中,所述 表示细胞密度测量结果, 所述 :为可调参数, 所述 表示指数生长期的比 生长速率预定值; When the determined fermentation period is an exponential growth phase, the / / ^ί) = ^ ρ2; wherein the said cell density measurement result, the: is an adjustable parameter, the ratio indicates the growth rate of the exponential growth phase Predetermined value
当确定出的发酵期为平稳期时, 所述 Q(0=«+^p3( - 2); 其中, 所述 α表示平稳期的初始营养物补料速率, 所述 为可调参数, 所述 ^3表 示平稳期的比生长速率预定值, 所述 表示细胞密度测量结果, 所述 ί2表示 平稳期的起始时刻, 所述 ,2表示 2时刻的细胞密度测量结果。 When the determined fermentation period is a stationary period, the Q (0=«+^ p3 ( - 2 ); wherein the α represents an initial nutrient feeding rate during the stationary period, the tunable parameter, ^ 3 represents the growth rate of said predetermined value than a stable period, the cell indicates density measurement, the stationary phase represented ί 2 starting time the 2 second time represents the cell density measurements.
10、 一种发酵过程控制器, 其特征在于, 包括: 10. A fermentation process controller, comprising:
发酵期识别模块 (61), 用于基于获取到的细胞特征测量结果, 确定发 酵过程当前所处发酵期; a fermentation period identification module (61) for determining a fermentation period currently in the fermentation process based on the obtained cell characteristic measurement result;
算法选择模块 (62), 用于选择与确定出的发酵期相对应的控制算法; 控制算法模块 (63), 用于根据所选择的控制算法, 对发酵过程中的营 养物补料速率进行控制。 An algorithm selection module (62) for selecting a control algorithm corresponding to the determined fermentation period; a control algorithm module (63) for controlling a nutrient feeding rate during the fermentation process according to the selected control algorithm .
11、 根据权利要求 10所述的发酵过程控制器, 其特征在于, 所述发酵 期识别模块 (61) 包括: 11. The fermentation process controller of claim 10, wherein the fermentation period identification module (61) comprises:
数据预处理子模块(611), 用于对获取到的细胞特征测量结果进行预处 理, 识别出异常点并进行剔除; a data pre-processing sub-module (611), configured to pre-process the obtained cell characteristic measurement result, identify the abnormal point and perform the culling;
确定子模块(612), 用于确定获取到的细胞特征测量结果中只包括细胞
密度测量结果还是同时包括细胞密度测量结果和细胞分布测量结果, 并将确 定结果通知给趋势分析和发酵期识别子模块 (613 ) ; Determining a sub-module (612) for determining that only the cells are included in the acquired cell characteristic measurement result The density measurement results also include the cell density measurement result and the cell distribution measurement result, and the determination result is notified to the trend analysis and fermentation period identification sub-module (613);
所述趋势分析和发酵期识别子模块(613 ), 用于当确定结果为获取到的 细胞特征测量结果中只包括细胞密度测量结果时,通过对细胞密度测量结果 进行趋势分析来确定所述发酵过程当前所处发酵期; 当确定结果为获取到的 细胞特征测量结果中同时包括细胞密度测量结果和细胞分布测量结果时,通 过对细胞密度测量结果和细胞分布测量结果进行三维空间跟踪分析来确定 所述发酵过程当前所处发酵期。 The trend analysis and fermentation period identification sub-module (613) is configured to determine the fermentation by performing trend analysis on the cell density measurement result when the determination result includes only the cell density measurement result in the obtained cell characteristic measurement result. The fermentation period currently in the process; when the determination result includes the cell density measurement result and the cell distribution measurement result in the obtained cell characteristic measurement result, the three-dimensional spatial tracking analysis is performed on the cell density measurement result and the cell distribution measurement result to determine The fermentation process is currently in the fermentation phase.
12、 根据权利要求 10或 11所述的发酵过程控制器, 其特征在于, 所述 发酵过程控制器中进一步包括: The fermentation process controller according to claim 10 or 11, wherein the fermentation process controller further comprises:
推导模型模块 (64), 用于利用获取到的细胞密度测量结果计算比生长 速率 , μ = -^- , 所述 表示细胞密度测量结果, 并将计算出的比生长 Deriving a model module (64) for calculating a specific growth rate using the obtained cell density measurement, μ = -^- , said the cell density measurement result, and calculating the calculated ratio
X at X at
速率 /提供给所述控制算法模块 (63 ) ; 所述控制算法模块 (63 ) 包括: Rate / is provided to the control algorithm module (63); the control algorithm module (63) includes:
第一计算子模块(631 ), 用于计算来自推导模型模块(64) 的比生长速 率 与自身预先保存的比生长速率预定值/ 之间的差值 根据确定出的 发酵期不同, 所述/ 的取值也将不同; a first calculation sub-module (631) for calculating a difference between a specific growth rate from the derivation model module (64) and a predetermined growth rate of the pre-preserved ratio according to the determined fermentation period, The value will also be different;
第二计算子单元 (632), 用于按照以下方式计算所述营养物补料速率: A second calculation subunit (632) for calculating the nutrient feed rate in the following manner:
Fs {t) =
+ Kc[e{t) + e{t)dt ; 其中, 所述 ^和 为可调参数; 所述 F ί)表示营养物补料速率; 所述 表示前向反馈部分; F s {t) = + K c [e{t) + e{t)dt ; wherein the sum is an adjustable parameter; the F ί) represents a nutrient feeding rate; the indicating a forward feedback portion;
当所述确定出的发酵期为延迟期时, 所述 ^ (0 = ^ + ^(0; 其中, 所述 和 Α:2为可调参数; When the determined fermentation period is a delay period, the ^(0 = ^ + ^(0; wherein, the sum: 2 is an adjustable parameter;
当所述确定出的发酵期为指数生长期时, 所述 。(0 = ^^ρ2 ; 其中,
所述 表示细胞密度测量结果, 所述 :为可调参数, 所述 2表示指数生长 期的比生长速率预定值; When the determined fermentation period is an exponential growth period, the said. (0 = ^^ ρ2 ; where, The said cell density measurement result, wherein: the parameter is an adjustable parameter, and the 2 represents a predetermined growth rate of the exponential growth phase;
当所述确定出的发酵期为平稳期时,所述/ ^ 0 = α + ^^^Γ-Α2); 其 中,所述 α表示平稳期的初始营养物补料速率,所述 为可调参数,所述 ίρ3 表示平稳期的比生长速率预定值, 所述 表示细胞密度测量结果, 所述 2表 示平稳期的起始时刻, 所述 表示 7时刻的细胞密度测量结果。 When the determined fermentation period is a stationary period, the / ^ 0 = α + ^^^Γ-Α 2 ) ; wherein the α represents an initial nutrient feeding rate during the stationary period, the To adjust the parameter, the ίρ3 represents a predetermined value of the specific growth rate of the stationary phase, the indicating the cell density measurement result, the 2 represents the start time of the stationary period, and the cell density measurement result indicating the 7th time.
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CN116153388A (en) * | 2023-04-19 | 2023-05-23 | 北京蓝晶微生物科技有限公司 | Quantitative relation model and application, cell state monitoring method, device and system |
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