WO2010075290A1 - Unsaturated heterocyclic inhibitors of necroptosis - Google Patents

Unsaturated heterocyclic inhibitors of necroptosis Download PDF

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Publication number
WO2010075290A1
WO2010075290A1 PCT/US2009/069010 US2009069010W WO2010075290A1 WO 2010075290 A1 WO2010075290 A1 WO 2010075290A1 US 2009069010 W US2009069010 W US 2009069010W WO 2010075290 A1 WO2010075290 A1 WO 2010075290A1
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Prior art keywords
optionally substituted
compound
pharmaceutically acceptable
stereoisomer
solvate
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PCT/US2009/069010
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French (fr)
Inventor
Junying Yuan
Chengye Yuan
Alexei Degterev
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President And Fellows Of Harvard College
Shanghai Institute Of Organic Chemistry, Chinese Academy Of Sciences
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Publication of WO2010075290A1 publication Critical patent/WO2010075290A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings

Definitions

  • the invention relates to heterocyclic compounds and to cell death, in particular through necrosis and necroptosis, and regulation thereof by heterocyclic compounds.
  • necrotic and/or necrotic pathways In many diseases, cell death is mediated through apoptotic and/or necrotic pathways. While much is known about the mechanisms of action that control apoptosis, control of necrosis is not as well understood. Understanding the mechanisms regulating both necrosis and apoplosis in cells is essential to being able to treat conditions, such as neurodegenerative diseases, stroke, coronary heart disease, kidney disease, and liver disease. A thorough understanding of necrotic and apoptotic cell death pathways is also crucial to treating AIDS and the conditions associated with AIDS, such as retinal necrosis. Cell death has traditionally been categorized as either apoptotic or necrotic based on morphological characteristics (Wyllie et al., Int. Rev. Cytol.
  • necroptosis One regulated caspase- independent cell death pathway with morphological features resembling necrosis, called necroptosis, has recently been described (Degterev et al., Nat. Chem. Biol. 1 :112 (2005)). This manner of cell death can be initiated with various stimuli (e.g., ⁇ NF- ⁇ and Fas ligand) and in an array of cell types (e.g., monocytes, fibroblasts, lymphocytes, macrophages, epithelial cells and neurons).
  • stimuli e.g., ⁇ NF- ⁇ and Fas ligand
  • cell types e.g., monocytes, fibroblasts, lymphocytes, macrophages, epithelial cells and neurons.
  • Necroptosis may represent a significant contributor to and, in some cases, predominant mode of cellular demise under pathological conditions involving excessive cell stress, rapid energy loss, and massive oxidative species generation, where the highly energy-dependent apoptosis process is not operative.
  • necrostatins for anti- necroptosis therapeutics.
  • the discovery of compounds that prevent caspase- independent cell death would also provide useful therapeutic agents for treating or preventing conditions in which necrosis occurs. These compounds and methods would be particularly useful for the treatment of neurodegenerative diseases, ischemic brain and heart injuries, and head trauma.
  • the invention features new compounds, pharmaceutical compositions, kits, and methods for treating a condition, e.g., a neurodegenerative condition, in a subject.
  • a condition e.g., a neurodegenerative condition
  • the invention features a compound of the formula
  • each X 1 , X 2 , X 3 , X 4 , X 5 , and X 6 is selected, independently, from N or
  • each Y , Y , and Y is selected, independently, from O, S, NR , or
  • Formula (I) does not include compounds where when R 1 is H, X 1 , X 2 , and X 4 are each CH, X 3 and X 5 are each N, Y 1 is S, Y 2 is NH, Z 1 is NH, and Z 2 is O, R 2 is not 4-fluorophenyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • Formula (I) does not include compounds where when R 1 is H, X 1 , X 2 , and X 4 are each CH, X 3 , X 5 , and X 6 are each N, Y 1 and Y 3 are each S, Y 2 is NH, Z 1 is NH, and Z 2 is O, R 2 is not 4-fluorophenyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • R 1 is unsubstituted phenyl or substituted phenyl. In some embodiments, R 1 is phenyl having 1, 2, 3, 4, or 5 substituents as defined herein.
  • the compound of Formula (I) has the following structure:
  • X 1 , X 2 , X 4 , X 5 , R 1 , Y 2 , and R Z1 are as defined for Formula (I); each R 2A , R 2B , R 2C , R 2D , and R 2E is selected, independently, from H, halogen, optionally substituted C 1-6 alkyl, optionally substituted C 2-6 alkenyL optionally substituted C 2 .
  • each R 10 , R 11 , R 12 , R 13 , and R 14 is selected, independently, from H, optionally substituted C 1-6 alkyl, optionally substituted C 2-6 alkenyl, optionally substituted C 2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R 10 and R 11 or R 12 and R 13 combine to form an optionally substituted heterocyclyl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • Formula (II) does not include compounds where when R 1 is H, X 1 , X 2 , and X 4 are each CH, X 3 and X 5 are each N, Y 1 is S, Y 2 is NH, Z 1 is O, and Z 2 is NH, R 2 is not 4-fluorophenyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • the compound of ihe indention has the following formula:
  • R 2F , R YI , R 71 , R 3 , R 4 , R 5 ⁇ R 6A , R 7 , R 8 , R 9 , and R 12 is as defined in Formula (II); and where each R X1A and R X1 B is selected, independently, from H, halogen,
  • R Y1 is H.
  • R X1 ⁇ is H and R X1B is H or optionally substituted C ⁇ . 6 alkyl.
  • R X1A and R X1B is H.
  • R 1 is H.
  • R 2 ⁇ , R lO , and R 2E are H.
  • R " ' is halogen.
  • R 2B is also halogen.
  • the compound is of the formula
  • each R 10 , R 1 1 , R 12 , and R 13 is selected, independently, from H, optionally substituted C 1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R 10 and R 11 or R 12 and R 13 combine to form an optionally substituted heterocyclyl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • R XIB is H.
  • R 2 ⁇ , R ;'D , and R 2E arc H.
  • R 2C is halogen.
  • R iB is halogen.
  • R 2C is optionally substituted CV 6 alkyl.
  • R 2C is NR 7 R 8 .
  • R 7 and R 8 are each C 1-6 alkyl.
  • the compound is of the formula
  • G is a bond, O, S, or NR ;
  • R is H or optionally substituted C 1-6 alkyl; and where (n+m) is at least 2, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • the compound is of the formula
  • n and m is, independently, an integer between 0-4; G is a bond, O, S, or NR 2J ; R 2J is H or optionally substituted C 1-6 alkyl; and where (n+m) is at least 2, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • the compound is of the formula
  • G 1 Is S( ⁇ O)a- In other embodiments, G 1 Ls a bond.
  • each R " ⁇ , ⁇ l 2L . R m , R 2N , and R 20 is selected, independently, from H, halogen, optionally substituted C 1-6 alkyl, and 0-(optionally substituted C 1-6 alkyl). In certain embodiments, R and R are H.
  • at least one of R ⁇ , R ?N , and R >o is O ⁇ (oplionally substituted C 1-6 alkyl). In other embodiments, at least one of
  • R “1V , and R 2 ° is optionally substituted C f -6 alkyl.
  • at least one of R 2M , R 2N , and R 20 is halogen.
  • the invention features a pharmaceutical composition that includes a pharmaceutically acceptable excipient and any of the compounds of the invention described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • the invention features a method of treating a condition in a subject, where the method includes the step of administering any of the compounds of the invention, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, to the subject in a dosage sufficient to decrease necroptosis.
  • the condition is a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, the result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, myocardial infarction, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft-versus-host disease, viral infection, Crohn's disease, ulcerative colitis, asthma, or any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor.
  • the condition is one in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor.
  • these conditions are cancer or infection by viruses (acute, latent and persistent), bacteria, fungi, or by other microbes.
  • the infection is caused by a virus selected from human immunodeficiency virus (HIV), Epstein- Barr virus (EBV), cytomegalovirus (CMV)5 human herpesviruses (HHV), herpes simplex viruses (HSV), human T-CeIl leukemia viruses (HTL V) 5 Varicella-Zoster virus (VZV), measles virus, papovaviruses (JC and BK), hepatitis viruses, adenovirus, parvoviruses, and human papillomaviruses.
  • HCV human immunodeficiency virus
  • EBV Epstein- Barr virus
  • CMV cytomegalovirus
  • HSV herpes simplex viruses
  • HTL V human T-CeIl leukemia viruses
  • VZV Varicella-Zoster virus
  • measles virus papovaviruses
  • JC and BK Varicella-Zoster virus
  • the infection is caused by bacteria selected from Campylobacter jejuni, Enterobacter species, Enterococcus faecium, ⁇ nterococcus faecal is, Escherichia coli (e.g., E. coli O157:H7), Group ⁇ streptococci, Haemophilus influenzae, Helicobacter pylori, listeria, Mycobacterium tuberculosis, Pseudomonas aeruginosa, S. pneumoniae, Salmonella, Shigella, Staphylococcus aureus, and Staphylococcus epidermidis.
  • bacteria selected from Campylobacter jejuni, Enterobacter species, Enterococcus faecium, ⁇ nterococcus faecal is, Escherichia coli (e.g., E. coli O157:H7), Group ⁇ streptococci, Haemophilus influenzae, Helicobacter pylor
  • the invention features a method of decreasing necroptosis comprising contacting a cell with any of the compounds of the invention described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • the invention features a kit including (a) a pharmaceutically acceptable composition comprising any of the compounds of the invention described herein , or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof; and (b) instructions for the use of the pharmaceutical composition of (a) to treat a condition in a subject.
  • a pharmaceutically acceptable composition comprising any of the compounds of the invention described herein , or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • the compound is any of Compounds (16)-(21), (22)-(36), (37)-(43), (44)-(52), or (53)-(65), or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • the compound is selected from the group consisting of:
  • C] -4 alkaryl is meant a C] -4 alkyl group having an optionally substituted aryl or an optionally substituted heteroaryl located at any position of the carbon chain.
  • the C 1 -4 alkyl group may be linear or branched and may also be substituted with, for example, 1, 2, 3, 4, or 5 additional substituents as described herein.
  • alkoxy is meant a group having the structure -O(optionally substituted C ] -6 alkyl), where the optionally substituted C 1-6 alkyl may be branched, linear, or cyclic.
  • the C 1-6 alkyl may be substituted or unsubstituted.
  • a substituted Cj. 6 alkyl can have, for example, 1 , 2, 3 ? 4, 5, or 6 suhstituerrts located at any position.
  • Exemplary alkoxy groups include, but are not limited to, methoxy, ethoxy, propoxy, isopropoxy, tert-butoxy, and the like.
  • C 2-6 alkenyl or “alkenyl” is meant an optionally substituted unsaturated C 2-6 hydrocarbon group having one or more carbon-carbon double bonds.
  • a C 2 . 6 alkenyl may be linear or branched and may be unsubstituted or substituted.
  • a substituted C 2-6 alkenyl may have, for example, 1, 2, 3, 4, 5, or 6 substituents located at any position.
  • C 1-6 alkyl or “alkyl” is meant an optionally substituted C 1-6 saturated hydrocarbon group.
  • An alkyl group may be linear, branched, or cyclic ("cycloalkyl”).
  • alkyl radicals include, but are not limited to, methyl, ethyl, n-propyl, isopropyl, n-butyl, iso-butyl, sec-butyl, sec pentyl, iso-pentyl, tert-butyl, n-pentyl, neopentyl, n-hexyl, sec-hexyl, n- heptyl, n-octyl, n-decyl, n-undecyl, dodecyl, and the like, which may bear one or more substituents.
  • Substituted alkyl groups may have, for example, 1, 2, 3, 4, 5, or 6 substituents located at any position. Exemplary substitute
  • ''C 2-6 alkynyl or "alkynyl” is meant an optionally substituted unsaturated C 2 . 6 hydrocarbon group having one or more carbon-carbon triple bonds.
  • exemplary C 2-6 alkynyl groups include, but are not limited to ethynyl. 1-propynyl, and the like
  • amino is meant a group having a structure -NR' R", where each R' and R" is selected, independently, from H, optionally substituted C 1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, or R' and R" combine to form an optionally substituted heterocyclyl.
  • R' and R" may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
  • aryl is meant is an optionally substituted C 6 -Ci 4 cyclic group with [4ft + 2] ⁇ electrons in conjugation and where n is 1, 2, or 3.
  • aryls include heteroaryls and, for example, benzene, naphthalene, anthracene, and phenanthrene.
  • Aryls also include bi- and tri-cyclic ring systems in which a non-aromatic saturated or partially unsaturated carbocyclic ring (e.g., a cycloalkyl or cycloalkenyl) is fused to an aromatic ring such as benzene or naphthalene.
  • aryls fused to a non-aromatic ring include indanyl, tetrahydronaphthyl,. Any aryls as defined herein may be unsubstituted or substituted. A substituted aryl may be optionally substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents located at any position of the ring.
  • aryloxy is meant a group having the structure -O(optionally substituted aryl >, where aryl is as defined herein.
  • azido is meant a group having the structure -Nv
  • carbamate or “carbamoyl” is meant a group having the structure -OCONR' R" or - NR 5 CO 2 R", where each R' and R" is selected, independently, from II, optionally substituted Ci. 6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, or R' and R" combine to form an optionally substituted heterocyclyl.
  • R' a ' > nut Il or R" is not H
  • R' and R" may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5. or 6 substhuents.
  • carbonate is meant a group having a the structure -OCO ⁇ R', where R' is selected from H, optionally substituted C 1 ⁇ 6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl.
  • R' is not H, R may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
  • '"earboxarnido 5" or ' “ amido'” is meant a group having the structure -CONR'R" or -NR'C(-0)R", where each R' and R" is selected, independently, from H, optionally substituted Ci -6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted het ⁇ roaryl, or R' and R" combine io form an optionally substituted heterocyclyl.
  • R' is not f- ⁇ or R"' is not H
  • K" and R"' may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
  • carboxylic group is meant a group having the structure -CO 2 R', where R' is selected from H, optionally substituted C 1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl. When R' is not H, R may be unsubstituted or substituted with, for example, I 5 2. 3, -4, 5, or 6 substituents.
  • cyano is meant a group having the structure -CN. By “C 3 ..
  • cycloalkyl or "cycloalkyl” is meant an optionally substituted, saturated or partially unsaturated 3- to 10-membered monocyclic or poly cyclic (e.g., bicyclic, or tricyclic) hydrocarbon ring system.
  • a cycloalkyl is polycyclic, the constituent cycloalkyl rings may be fused together, form a spirocyclic structure, or the polycyclic cycloalkyl may be a bridged cycloalkyl (e.g., adamantyl or norbonanyl) .
  • cycloalkyls induce cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloheptyl.
  • Cycloalkyls may be unsubstituted or substituted.
  • a substituted cycloalkyl can have, for example, 1 , 2, 3, 4, 5, or 6 substituents.
  • cycloalkenyl is meant a non-aromatic, optionally substituted 3- to 10-membered monocyclic or bicyclic hydrocarbon ring system having at least one carbon-carbon double bound.
  • a cycloalkenyl may have 1 or 2 carbon-carbon double bonds.
  • Cycloalkenyls may be unsubstituted or substituted.
  • a substituted cycloalkenyl can have, for example, 1, 2, 3, 4, 5, or 6 substituents.
  • Exemplary cycloalkenyls include, but are not limited to, cyclopropenyl, cyclobutenyl, cyclopentenyl, cyclopentadienyl, cyclohexenyl, 1,3-cyclohexadienyl, 1,4-cyclohexadienyl, and the like.
  • an effective amount or “therapeutically effective amount” of an agent is that amount sufficient to effect beneficial or desired results, such as clinical results, and, as such, an effective amount depends upon the context in which it is being applied.
  • an effective amount of an agent is, for example, an amount sufficient to achieve a reduction in necroptosis as compared to the response obtained without administration of the agent.
  • ester is meant a group having a structure selected from -OCOR', where R' is selected from H, optionally substituted C 1 ⁇ alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl. When R' is not H, R may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
  • haJogcfT or halo is meant fluorine (-F), chlorine (-Cl), bromine (-Br), or iodine (-1).
  • heteroaryl is mean an aryl group that contains 1, 2, or 3 heteroatoms in the cyclic framework.
  • exemplary heteroaryls include, but are not limited to, furan, thiophene, pyrrole, thiadiazole (e.g., 1,2,3-thiadiazole or 1,2,4-thiadiazole), oxadiazole (e.g., 1,2,3-oxadiazole or 1,2,5-oxadiazole), oxazole, benzoxazole, isoxazolc, isothiazole, pyrazole, thiazole, benzthiazole, triazole (e.g., 1 ,2,4-triazole or 1,2,3-triazole), benzotriazole, pyridines, pyrimidines, pyrazines, quinoline, isoquinoline, purine, pyrazine, pteridine, triazine ( ⁇ .g, LzJ-triazine, 1 ,
  • heteroaryls can have, for example, 1 , 2, 3, 4, 5, or 6 subsitutents.
  • heterocyclic or “heterocyclyi'” is meant an optionally substituted non-aromatic, partially unsaturated or fully saturated, 3- to 10 membered ring system, which includes single rings of 3 to 8 atoms in size, and polycyclic ring systems (e.g., bi- and tri-cyclic ring systems) which may include an aryl (e.g., phenyl or naphthyl) or heteroaryl group that is fused to a non-aromatic ring (e.g., cycloalkyl, cycloalkenyl, or heterocyclyl), where the ring system contains at least one heterotom.
  • aryl e.g., phenyl or naphthyl
  • heteroaryl group e.g., cycloalkyl, cycloalkenyl, or heterocyclyl
  • Heterocyclic rings include those having from one to three heteroatoms independently selected from oxygen, sulfur, and nitrogen, in which the nitrogen and sulfur heteroatoms may optionally be oxidized and the nitrogen heteroatom may optionally be quaternized or substituted.
  • the term heterocylic refers to a non-aromatic 5-, o-, or 7- membered monocyclic ring wherein at least one ring atom is a heteroatom selected from O, S, and N (wherein the nitrogen and sulfur heteroatoms may be optionally oxidized), and the remaining ring atoms are carbon, the radical being joined to the rest of the molecule via any of the ring atoms.
  • heterocycle is polycyclic
  • the constituent rings may be fused together, form a spirocyclic structure, or the polycyclic heterocycle may be a bridged heterocycle (e.g., quinuclidyl or .
  • exemplary heterocyclics include, but arc not limited to, aziridinyl, azetindinyl, 1,3-diazatidinyl, pyrrolidinyl, piperidinyl, piperazinyl, thiranyl, thietanyl, tetrahydrothiophenyl, dithiolanyl, tetrahydrothiopyranyl, oxiranyl, oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, pyranonyl, 3,4-dihydro-2H-pyranyl, chromenyl, 2H-chromen-2-onyl, chromanyl, dioxanyl (e.g.
  • 1,3-dioxanyl or 1,4-dioxanyl 1,4-benzodioxanyl, oxazinyl, oxathiolanyl, morpholinyl, thiomorpholinyl, thioxanyl, quinuclidinyl, and also derivatives of said exemplary heterocyclics where the heterocyclic is fused to an aryl (e.g., a benzene ring) or a heteroaryl (e.g., a pyridine or pyrimidine) group. Any of the heterocyclic groups described herein may be imsubsiituted or substituted.
  • a substituted heterocycle may have, for example, 1, 2, 3, 4, 5, or 6 substituents.
  • ketone or "acyl” is meant a group having the structure -COR', where R' is selected from H, optionally substituted Ci -6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl. When R' is not H, R may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
  • ' nitr ⁇
  • a "pharmaceutically acceptable excipient” as used herein refers any ingredient other than the compounds described herein (for example, a vehicle capable of suspending or dissolving the active compound) and having the properties of being nontoxic and non-infia ⁇ i ⁇ iaiorv in a patient
  • Excipients may include, for example: antiadherents, antioxidants, binders, coatings, compression aids, disint ⁇ grants, dyes (colors K emollients, cniulsificrs, fillers (diluents), film formers or coatings, flavors, fragrances, glidants (flow enhancers), lubricants, preservatives, printing inks, sorbents, suspensing or dispersing agents, sweeteners, or waters of hydration.
  • excipients include, but are not limited to: butylated hydroxytoluene (BHT), calcium carbonate, calcium phosphate (dibasic), calcium stearate, croscarmellose, crosslinked polyvinyl pyrrolidone, citric acid, crospovidone, cysteine, ethylcellulose, gelatin, hydroxypropyl cellulose, hydroxypropyl methylcellulose, lactose, magnesium stearate, maltitol, mannitol, methionine, methylcellulose, methyl paraben, microcrystalline cellulose, polyethylene glycol, polyvinyl pyrrolidone, povidone, pregelatinized starch, propyl paraben, retinyl palmitate, shellac, silicon dioxide, sodium carboxymethyl cellulose, sodium citrate, sodium starch glycoiate, sorbitol, starch (com), stearic acid, stearic acid, sucrose, talc, titanium dioxide, vitamin A
  • pharmaceutically acceptable salt represents those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and animals without undue toxicity, irritation, allergic response and the like and are commensurate with a reasonable benefit/risk ratio.
  • Pharmaceutically acceptable salts are well known in the art. For example, S. M Berge et al. describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1911 , 66:1-19.
  • the salts can be prepared in situ during the final isolation and purification of the compounds of the invention or separately by reacting the free base group with a suitable organic acid.
  • Representative acid addition salts include acetate, adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphersulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, fumarate, glucoheptonate, glycerophosphate, hemisulfate, heptonate, hexanoate, hydrobromide, hydrochloride, hydroiodide, 2-hydroxy- ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate,
  • alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium and the like, as well as nontoxic ammonium, quaternary ammonium, and amine cations, including, but not limited to ammonium, tetramethylammonium, tetraethylammonium, methylamine, dimethylamine, trimethylamine. triethylamine, ethyl amine and the like.
  • solvates refers to compounds that retain non-covalent associations to residual solvent molecules in the solid state.
  • solvates may be prepared by crystallization, recrystallization, or precipitation from a solution that includes organic solvents, water, or a mixture thereof.
  • Solvates include, but are not limited to, compounds that include solvent molecules in the crystal lattice following recrystallization.
  • the molecular stoichiometry of solvation can vary from, for example, 1:1 solventxompound to 10:1 solvent xompound. These ratios can include a mixture of associated solvent molecules.
  • water for example, mono-, di-, and tri-hydrates
  • ⁇ MP N- methylpyrrolidinone
  • DMSO dimethyl sulfoxide
  • DMAC N 5 N '-dimethylacetamide
  • compositions a composition containing a compound of the invention, formulated with a pharmaceutically acceptable excipient, and manufactured or sold with the approval of a governmental regulatory agency as part of a therapeutic regimen for the treatment of disease in a mammal. Excipients consisting of DMSO are specifically excluded.
  • Pharmaceutical compositions can be formulated, for example, for oral administration in unit dosage form (e.g., a tablet, capsule, caplet, gelcap, or syrup); for topical administration (e.g., as a cream, gel, lotion, or ointment); for intravenous administration (e.g., as a sterile solution free of particulate emboli and in a solvent system suitable for intravenous use); or any other formulation described herein.
  • stereoisomer is meant a diastereomer, enantiomer, or epimer of a compound.
  • a chiral center in a compound may have the ⁇ -configuration or the ⁇ -configuration.
  • Enantiomers may also be described by the direction in which they rotate polarized light (i.e., (+) or (-)).
  • Diastereomers of a compound include stereoisomers in which some, but not all, of the chiral centers have the opposite configuration as well as those compounds in which substituents are differently oriented in space (for example, frans versus cis).
  • a substituted group may have, for example, L 2, 3, 4, 5, 6, 7, 8, or 9 substituents.
  • each hydrogen in a group may be replaced by a substituent group (e.g., perhaloalkyl groups such as -CF 3 or -CF 2 CF 3 or perhaloaryls such as -C 6 F 5 ).
  • a substituent group may itself be further substituted by replacing a hydrogen of said substituent group with another substituent group such a& those described herein. Substituents may be further substituted with, for example, 1 , 2, 3, 4.
  • a lower CY* alkyl or an aryl substituent group e.g., heteroaryl, phenyl, or naphthyl
  • aryl substituent group e.g., heteroaryl, phenyl, or naphthyl
  • 1, 2, 3, 4, 5, or 6 substituents as described herein tor example, a lower CY* alkyl or an aryl substituent group (e.g., heteroaryl, phenyl, or naphthyl) may be further substituted with 1, 2, 3, 4, 5, or 6 substituents as described herein.
  • Fig. 1 shows that Compound (3) does not inhibit recombinant RIPl kinase.
  • heterocyclic derivatives that inhibit tumor necrosis factor alpha (TNF- ⁇ )-induced necroptosis.
  • the heterocyclic compounds of the invention are described by Formulas (I) and (II) and are shown to inhibit TNF- ⁇ induced necroptosis in FADD-deficient variant of human Jurkat T cells.
  • Pharmaceutical compositions including the compounds of the invention arc also described.
  • the invention also features kits and methods of treatment featuring the compounds and compositions of the invention.
  • each X 1 , X 2 , X 3 , X 4 , X 5 , and X 6 is selected, independently, from N or
  • each Y felicitous Y . and Y" is selected, independently, from O, S, NR Yl , or
  • R 1 is H 5 X ! , X 2 , and X 4 are each CH, X 3 and X- are each N, Y 1 is S, Y 2 is NH, Z 1 is NH, and Z 2 is O, R 2 is not 4- fluorophenyl.
  • OR 5A , -S( O)>MR 5 ⁇ K 6A , optionally substituted C 1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
  • RX 1B is selected from H, halogen, CN, NC, NO 2 , N 3 , optionally substituted C 1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl.
  • Exemplary compounds of the invention include compounds of Formula (II-C) such as those shown in Table 1: Table 1
  • Additional exemplary compounds include those of Formula (II-B-1) such as those described in Table 2
  • Additional exemplary compounds include those of Formula (II-B-2) such as those described in Table 3.
  • Reagents and conditions (a) 2-chloroacetyi chloride, Ei 5 N, CH7CI 2 , 0° to room temperature. 53%: (b) KSCN, EtOH, reflux, 85%; (c) H,NHNCONH 2 -HC1, NaOAc, CH 1 OHZH-A 98%; (d) (I)POCl 3 -DMF '' , (H) 1O 0 ZoNaOH 5 (Hi) I O N HCl 86%; ( ⁇ ) NaOAc, HOAc, reflux, 91%.
  • Compounds of the invention can be formulated into pharmaceutical compositions for administration to human subjects in a biologically compatible form suitable for administration in vivo.
  • the present invention provides a pharmaceutical composition comprising a compound of the invention in admixture with a pharmaceutically acceptable excipient.
  • Conventional procedures and ingredients for the selection and preparation of suitable formulations are described, for example, in Remington's Pharmaceutical Sciences (2003 - 20 th edition) and in The United States Pharmacopeia: The National Formulary (USP 24 NF 19), published in 1999.
  • the compounds of the invention may be used in the form of the free base, in the form of salts, solvates, and as prodrugs. All forms are within the scope of the invention, In accordance with the methods of the invention, the described compounds or salts, solvates, or prodrugs thereof may be administered to a patient in a variety of forms depending on the selected route of administration, as will be understood by those skilled in the art.
  • the compounds of the invention may be administered, for example, by oral, parenteral, buccal, sublingual, nasal rectal, patch, pump, or transdermal administration and the pharmaceutical compositions formulated accordingly.
  • Parenteral administration includes intravenous, intraperitoneal, subcutaneous, intramuscular, transepithelial, nasal, intrapulmonary, intrathecal, rectal, and topical modes of administration. Parenteral administration may be by continuous infusion over a selected period of time.
  • Pharmaceutically acceptable excipients may include, for example: antiadherents, antioxidants, binders, coatings, compression aids, d ⁇ sintegrants, dyes (colors), emollients, emulsifiers, fillers (diluents), film formers or coatings, flavors, fragrances, glidants (flow enhancers), lubricants, preservatives, printing inks, sorbents, suspensing or dispersing agents, sweeteners, or waters of hydration.
  • excipients include, but are not limited to: butylated hydroxytoluene (BHT), calcium carbonate, calcium phosphate (dibasic), calcium stearate, croscarmellose, crosslinked polyvinyl pyrrolidone, citric acid, crospovidone, cysteine, ethylcellulose, gelatin, hydroxypropyl cellulose, hydroxypropyl methylcellulose, lactose, magnesium stearate, maltitol, mannitol, methionine, methylcellulose, methyl paraben, microcrystalline cellulose, polyethylene glycol, polyvinyl pyrrolidone, povidone, pregelatinized starch, propyl paraben, retinyl palmitate, shellac, silicon dioxide, sodium carboxymethyl cellulose, sodium citrate, sodium starch glycolate, sorbitol, starch (corn), stearic acid, stearic acid, sucrose, talc, titanium dioxide, vitamin A, B
  • a compound of the invention may be orally administered, for example, with an inert diluent or with an assimilable edible carrier, or it may be enclosed in hard or soft shell gelatin capsules, or it may be compressed into tablets, or it may be incorporated directly with the food of the diet.
  • a compound of the invention may be incorporated with an excipient and used in the form of ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, and the like.
  • a compound of the invention may also be administered parenterally.
  • the pharmaceutical forms suitable for injectable use include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. In all cases the form must be sterile and must be fluid to the extent that may be easily administered via syringe.
  • compositions for nasal administration may conveniently be formulated as aerosols, drops, gels, and powders.
  • Aerosol formulations typically include a solution or fine suspension of the active substance in a physiologically acceptable aqueous or non-aqueous solvent and are usually presented in single or multidose quantities in sterile form in a sealed container, which can take the form of a cartridge or refill for use with an atomizing device.
  • the sealed container may be a unitary dispensing device, such as a single dose nasal inhaler or an aerosol dispenser fitted with a metering valve which is intended for disposal after use.
  • the dosage form comprises an aerosol dispenser
  • a propellant which can be a compressed gas, such as compressed air or an organic propellant, such as fluorochlorohydrocarbon.
  • the aerosol dosage forms can also take the form of a pump-atomizer.
  • compositions suitable for buccal or sublingual administration include tablets, lozenges, and pastilles, where the active ingredient is formulated with a carrier, such as sugar, acacia, tragacanth, or gelatin and glycerine.
  • Compositions for rectal administration are conveniently in the form of suppositories containing a conventional suppository base, such as cocoa butter.
  • the compounds of the invention may be administered to an animal alone or in combination with pharmaceutically acceptable carriers, as noted above, the proportion of which is determined by the solubility and chemical nature of the compound, chosen route of administration, and standard pharmaceutical practice.
  • the amount of active ingredient in the compositions of the invention can be varied.
  • dosage levels of between 0.1 ⁇ g/kg to 100 mg/kg of body weight are administered daily as a single dose or divided into multiple doses.
  • the general dosage range is between 250 ⁇ g/kg to 5.0 mg/kg of body- weight per day. Wide variations in the needed dosage are to be expected in view of the differing efficiencies of the various routes of administration.
  • oral administration generally would be expected to require higher dosage levels than administration by intravenous injection. Variations in these dosage levels can be adjusted using standard empirical routines for optimization, which are well known in the art. In general, the precise therapeutically effective dosage will be determined by the attending physician in consideration of the above identified factors.
  • necroptosis is likely to play a substantial role, e.g., cerebral ischemia, traumatic brain injury, a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, ihc result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, myocardial infarction, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft-versus-host disease, viral infection, Crohn's disease, ulcerative colitis, asthma, or any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative
  • the compounds identified to decrease necrosis or necroptosis may be structurally modified and subsequently used to decrease necrosis or necroptosis, or to treat a subject with a condition in which necrosis or necroptosis occurs.
  • the methods used to generate structural derivatives of the small molecules that decrease necrosis or necroptosis are readily known to those skilled m the fields of organic and medicinal chemistry.
  • Therapy according to the invention may be performed alone or in conjunction with another therapy, for example in combination with apopiosis inhibitors, and may be provided at home, the doctor's office, a clinic, a hospital's outpatient department, or a hospital.
  • Treatment generally begins at a hospital so that the doctor can observe the therapy's effects closely and make any adjustments that are needed.
  • the duration of the therapy depends on the age and condition of the patient, as well as how the patient responds to the treatment. Additionally, a person having a greater risk of developing a condition may receive prophylactic treatment to inhibit or delay symptoms of the disease.
  • the compounds and methods of the invention can be used to treat any of the following disorders where necroptosis is likely to play a substantial role: a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, the result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal lail ⁇ re; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, myocardial infarction, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft- versus-host disease, viral infection, bacterial infection. Crohn's disease, ulcerative colitis, asthma, and any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor
  • Conditions Caused by Alteration in Cell Proliferation include cancer and Infe ⁇ loru e.g., by viruses (e.g., acute, latent and persistent), bacteria, fungi, or other microbes.
  • Exemplary viruses are human immunodeficiency virus (HIV), Epstein- Barr virus (EBV), cytomegalovirus (CMV)5 human herpesviruses (HHV), herpes simplex viruses (HSV), human T-CeIl leukemia viruses (HTL V)5 Varicella-Zoster virus (VZV), measles virus, papovaviruses (JC and BK), hepatitis viruses, adenovirus, parvoviruses, and human papillomaviruses.
  • Exemplary diseases caused by viral infection include, but are not limited to, chicken pox. Cytomegalovirus infections, genital herpes, Hepatitis B and C, influenza, and shingles.
  • Exemplary bacteria include, but are not limited to Campylobacter jejuni, Enterobacter species, Enterococcus faecium, Enterococcus faecalis, Escherichia coli (e.g., F. coli O157:H7), Group A streptococci, Haemophilus influenzae, Helicobacter pylori, listeria, Mycobacterium tuberculosis, Pseudomonas aeruginosa, S. pneumoniae, Salmonella, Shigella, Staphylococcus aureus, and Staphylococcus epidermidis.
  • Campylobacter jejuni Enterobacter species
  • Enterococcus faecium Enterococcus faecalis
  • Escherichia coli e.g., F. coli O157:H7
  • Group A streptococci Haemophilus influenzae
  • Helicobacter pylori listeria
  • Exemplary diseases caused by bacterial infection include, but are not limited to, anthrax, cholera, diphtheria, foodborne illnesses, leprosy, meningitis, peptic ulcer disease, pneumonia, sepsis, tetanus, tuberculosis, typhoid fever, and urinary tract infection.
  • neurodegenerative diseases are Alzheimer's disease, Huntington's disease, Parkinson's disease, amyotrophic lateral sclerosis, HIV- associated dementia, cerebral ischemia, amyotropic lateral sclerosis, multiple sclerosis, Lewy body disease, Menke's disease, Wilson's disease, Creutzfeldt- Jakob disease, and Fahr disease.
  • Exemplary muscular dystrophies or related diseases are Becker's muscular dystrophy, Duchenne muscular dystrophy, myotonic dystrophy, limb-girdle muscular dystrophy, Landouzy-Dejerine muscular dystrophy, facioscapulohumeral muscular dystrophy (Steinert's disease), myotonia congenita, Thomsen's disease, and Pompe's disease.
  • Muscle wasting can be associated with cancer, AIDS, congestive heart failure, and chronic obstructive pulmonary disease, as well as include necrotizing myopathy of Intensive care.
  • Compounds and methods of the invention can additionally be used to boost the immune system, whether or not the patient being treated has an immunocompromising condition.
  • the compounds described herein can be used in a method to strengthen the immune system during immunization, e.g., by functioning as an adjuvant, or by being combined with an adjuvant.
  • kits may include instructions for use of the compounds of the invention in a screening method or as a therapy as described herein.
  • the following non-limiting examples are illustrative of the present invention.
  • the latter was prepared by the slow addition of POCl 3 (1 1 mmol) to DMF (22mmol) at 0 ° C.
  • the reaction mixture was heated at 60-70 ⁇ C for about 4 hours and then poured onto cracked ice (10 g).
  • the resulting mixture was neutralized with NaOH (2 g in 8 mL water), heated at 50-60 ° C for 5 minutes, and cooled. Impurities were then removed by filtration.
  • the filtrate was acidified to pH - 5-6 using IO N HCl.
  • the resulting precipitated solid was collected by filtration and washed with water.
  • the product (2) was dried in the air (712 mg, 75%). If needed, the solid was further purified by crystallization from ethanol/water.
  • derivatives with other aromatic heterocycles in place of pyrazole were synthesized, such as triazole and isoxazole (see Schemes 5-7).
  • derivatives (10) were prepared through condensation of these various carboxaldehyde derivatives (7). (8) or (9) with thiazolidone (1).
  • the requisite phenylpropiolaldehyde starting material was prepared from the corresponding p-substituted benzaldehyde through a Corey-Fuchs reaction (Journet et al., Tetrahedron Lett. 39: 6427 (1998)) and then cyclized with sodium azide in DMSO at room temperature to form 5-aryl-4- carbaldehyde-l,2,3-trizazoles (7a)-(7d) (Scheme 5; Journet et al., Tetrahedron Lett. 42: 9117 (2001)), where, respectively, R is H, Cl, OCII 3 , or F.
  • Reagents and conditions (a) CBr 4 , PPh 3 , CH 2 Cl 2 , 0 0 C -rt, 81 -88%; (b) i) n-BuLi, -78°C, ii) DMF, iii) 10%KH 3 PO 4 , 64-71%; (c) i) NaN-,. DMSO,rt, n) 15%KH 2 PO 4 41-61%
  • N atom of pyrazole can easily react with electrophilic reagents in the present of potassium carbonate at room temperature, such as iodom ethane, bromoacetonitrile and benzyl bromide.
  • electrophilic reagents in the present of potassium carbonate at room temperature such as iodom ethane, bromoacetonitrile and benzyl bromide.
  • the main products were N-substituted 3-aryl-4-carboxaldehydepyrazoles (9) (Scheme 7).
  • Reagents and conditions (a) RX, K 2 CO 3 , CH 3 CN. ri, 65-91%.
  • cells were treated with 10 ng/mL of human TNF- ⁇ in the presence of increasing concentration of test compounds for 24 hours followed by ATP -based viability assessment.
  • heterocyclic groups without an oxygen atom ((37) and (38)) also increased activity, but less so compared to the morpholine ring.
  • a derivative with a 6-membered ring displayed better activity compared to a 5- membered ring ((37) vs. (38)).
  • Thiomorpholine substitution improved activity similar to that of morpholine ((39) vs. (29)).
  • addition of the N- containing heterocycles to the phenyl ring through an acyl moiety, e.g. piperidine ring resulted in further improvement in activity ((42) vs. (43)).
  • RIPl kinase autophosphorylation reactions were performed in the presence of the indicated concentrations of Nec-1 and compound (3) for 30 min at 30 0 C. Reactions were performed as described in Degterev et al., Not. Chem. Biol, 4: 313-321 (2008). Briefly, recombinant human GST-RIPl (1-375 a.a.) was expressed using Baculogold system in Sf9 cells and purified using glutathione-sepharose beads. Protein was eluted in 50 mM Tris-HCl, pH 8.0. Two micrograms of protein were used in each reaction. Reactions were performed in the presence of 20 mM ATP and 3 mCi ⁇ - 32 P-ATP.

Abstract

The invention features new small molecule inhibitors of necroptosis. The compounds of the invention are described by Formulas (I) and (II). The invention also features pharmaceutical compositions that include compounds of Formula (I) and (II). The compounds and compositions of the invention are also featured in kits and in methods of treatment of conditions that include neurodegenerative diseases, ischemic brain and heart injuries, and head trauma.

Description

UNSATURATED HETEROCYCLIC INHIBITORS OF NECROPTOSIS
Cross-Reference to Related Applications
This application claims benefit of U.S. Provisional Application No. 61/139,904, filed December 22, 2008, which is hereby incorporated by reference.
Statement as to Federally Sponsored Research
This invention was made with government support under NS050560 awarded by the National Institutes of Health. The U.S. government has certain rights to this invention.
Field of the Invention
The invention relates to heterocyclic compounds and to cell death, in particular through necrosis and necroptosis, and regulation thereof by heterocyclic compounds.
Background of the Invention
In many diseases, cell death is mediated through apoptotic and/or necrotic pathways. While much is known about the mechanisms of action that control apoptosis, control of necrosis is not as well understood. Understanding the mechanisms regulating both necrosis and apoplosis in cells is essential to being able to treat conditions, such as neurodegenerative diseases, stroke, coronary heart disease, kidney disease, and liver disease. A thorough understanding of necrotic and apoptotic cell death pathways is also crucial to treating AIDS and the conditions associated with AIDS, such as retinal necrosis. Cell death has traditionally been categorized as either apoptotic or necrotic based on morphological characteristics (Wyllie et al., Int. Rev. Cytol. 68: 251 (1980)). These two modes of cell death were also initially thought to occur via regulated (caspase-dependent) and non-regulated processes, respectively. More recent studies, however, demonstrate that the underlying cell death mechanisms resulting in these two phenotypes are much more complicated and, under some circumstances, interrelated. Furthermore, conditions that lead to necrosis can occur by either regulated caspase- independent or non-regulated processes.
One regulated caspase- independent cell death pathway with morphological features resembling necrosis, called necroptosis, has recently been described (Degterev et al., Nat. Chem. Biol. 1 :112 (2005)). This manner of cell death can be initiated with various stimuli (e.g., ΪNF-α and Fas ligand) and in an array of cell types (e.g., monocytes, fibroblasts, lymphocytes, macrophages, epithelial cells and neurons). Necroptosis may represent a significant contributor to and, in some cases, predominant mode of cellular demise under pathological conditions involving excessive cell stress, rapid energy loss, and massive oxidative species generation, where the highly energy-dependent apoptosis process is not operative.
The identification and optimization of low molecular weight molecules capable of inhibiting necroptosis will assist in elucidating its role in disease patho-physiology and could provide compounds (i.e., necrostatins) for anti- necroptosis therapeutics. The discovery of compounds that prevent caspase- independent cell death (e.g., necrosis or necroptosis) would also provide useful therapeutic agents for treating or preventing conditions in which necrosis occurs. These compounds and methods would be particularly useful for the treatment of neurodegenerative diseases, ischemic brain and heart injuries, and head trauma.
Summary of the Invention
The invention features new compounds, pharmaceutical compositions, kits, and methods for treating a condition, e.g., a neurodegenerative condition, in a subject. In one aspect, the invention features a compound of the formula
Figure imgf000005_0001
(I), where each X1, X2, X3, X4, X5, and X6 is selected, independently, from N or
CRX1; each Y , Y , and Y is selected, independently, from O, S, NR , or
CRY2RY3; each Z1 and Z2 is selected, independently, from O5 S, or NRZ!; each RY1 and RZ1 is selected, independently, from H, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, - C(=O)R5A, -C(-O)OR5A, or -C(-O)NR5AR6A; each RX1, RY2, and RY3 is selected, independently, from H, halogen, CN, NC, NO2, N3, OR3, SR3, NR3R4, -C(=O)RSA, -C(=O)OR5A, -C(=O)NR5AR6A 5 - S(=O)R5A, -S(=O)2R5A, -S(=O)2OR5A, -S(=O)2NR5AR6A, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2_6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl; each R1, R2, R5A, R5B, R6A, and R6B is selected from H, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R5A and R6A, or R5B and R6B combine to form a heterocyclyl; and each R3 and R4 is selected from H, optionally substituted C1 -6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, -C(=O)R5B, -C(-S)R5B, -C(-NR6B)R5B, -C(-O)OR5B, -C(-O)NR5BR6B, -S(=O)R5B, -S(-O)2R5B, - S(=O)2OR5B, or -S(=O)2NR5BR6B; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In some embodiments, Formula (I) does not include compounds where when R1 is H, X1, X2, and X4 are each CH, X3 and X5 are each N, Y1 is S, Y2 is NH, Z1 is NH, and Z2 is O, R2 is not 4-fluorophenyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In some embodiments, Formula (I) does not include compounds where when R1 is H, X1, X2, and X4 are each CH, X3, X5, and X6 are each N, Y1 and Y3 are each S, Y2 is NH, Z1 is NH, and Z2 is O, R2 is not 4-fluorophenyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In some embodiments, R1 is unsubstituted phenyl or substituted phenyl. In some embodiments, R1 is phenyl having 1, 2, 3, 4, or 5 substituents as defined herein.
In some embodiments, the compound of Formula (I) has the following structure:
Figure imgf000006_0001
(II), where
X1, X2, X4, X5, R1, Y2, and RZ1 are as defined for Formula (I); each R2A, R2B, R2C, R2D, and R2E is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyL optionally substituted C2.6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, CN, NC, NO2, N3, OR7, SR7, S(K))R12, S(O)2R12, S(K))OR12. S(=O)2OR12, NR7R8, C(^O)R12. C(K))OR12, C(K))NR12R13, C(^S)R12, C(=S)OR12, C(=S)NR12R13, C(=NR9)R12, C(=NR9)OR12, or C(=NR9)NR!2R33, or R2A and R2B, R2B and R2C, R2C and R2D, or R2D and R2E combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyi; each R , R , and R is selected, independently, from H, optionally substituted Cj-,, alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, SrO)R10, Sf- O)2R30, C(O)R10, C(O)OR10. C( -OjNR10R31, C(=S)R10, C(-S)()R10, Cf-S)NR10R11. C(=NR14)R10, C(-NR14)OR10. or
CC-NR14JNR50R11. or R7 and R8 combine io form an optionally substituted heterocyclyl; and each R10, R11, R12, R13, and R14 is selected, independently, from H, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R10 and R11 or R12 and R13 combine to form an optionally substituted heterocyclyl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In some embodiments, Formula (II) does not include compounds where when R1 is H, X1, X2, and X4 are each CH, X3 and X5 are each N, Y1 is S, Y2 is NH, Z1 is O, and Z2 is NH, R2 is not 4-fluorophenyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof. In other embodiments, the compound of ihe indention has the following formula:
Figure imgf000007_0001
(H-A), where each R1, RM, R2B, R2C, R2D. R2F, RYI, R71, R3, R4, R5\ R6A, R7, R8, R9, and R12 is as defined in Formula (II); and where each RX1A and RX1 B is selected, independently, from H, halogen,
CN, NC, NO2, N3, OR3, NR3R4, -C(O)R, -C(=O)OR5A. -C( U)NR5ARoA, -S(O)2R, -S(=O)2OR5A, -S(-O)2NR5AR6A, optionally substituted C1 -6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof. In any of the compounds described herein, RY1 is H.
In any of the compounds described herein, or any pharmaceutically
71 acceptable salt or solvate thereof, or stereoisomer thereof, R is H.
In any of the compounds described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, RX1Λ is H and RX1B is H or optionally substituted C{.6 alkyl.
In any of the compounds described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, RX1A and RX1B is H.
In any of the compounds described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, R1 is H. In any of the compounds described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, R, RlO, and R2E are H.
In any of the compounds described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, R2C is selected from halogen, OR7, SR7, S(^O)2R12, NR7R8, C(=O)R12, C(^O)OR12, C(=O)NRl2R13, optionally substituted C1-6 alkyl, optionally substituted heterocyclyl, or optionally substituted aryl.
In any of the compounds described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, R" ' is halogen. In any of the compounds described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, R2B is also halogen. In some embodiments, the compound is of the formula
Figure imgf000009_0001
where
RXIB is H or optionally substituted C1-6 alkyl; each R2A, R2B, R2C, R2D, and R2E is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, OR7, S(=O)R12, S(O)2R12, NR7R8, C(=O)R12, C(=O)OR12, or C(=O)NR12R13, or R2A and R2B, R2B and R2C 5 R2C and R2D, or R2D and R2E combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl; each R and R is selected, independently, from H, optionally substituted Ci-6 alkyl. optionally substituted cycloalkyl , optionally substituted heterocyclyl, optionally substituted aryl, optional]}' substituted heteroaryl, S(O)R.'0, SC=O)2R10, C(O)R10, C(O)OR10, C(O)NR10R11, or R7 and R8 combine to form an optionally substituted heterocyclyl; and each R10, R1 1, R12, and R13 is selected, independently, from H, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R10 and R11 or R12 and R13 combine to form an optionally substituted heterocyclyl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In some embodiments, RXIB is H. In other embodiments, R, R;'D, and R2E arc H. In still other embodiments, R2C is halogen. In other embodiments, RiB is halogen. In some embodiments, R2C is optionally substituted CV6 alkyl. In certain embodiments, R2C is optionally substituted heterocyclyl, NR R8, or C(=O)NR12R13. In further embodiments R2C is NR7R8. In some embodiments, R7 and R8 are each C1-6 alkyl.
In still other embodiments, the compound is of the formula
Figure imgf000010_0001
independently, an integer between 0-4; G is a bond, O, S, or NR ; R is H or optionally substituted C1-6 alkyl; and where (n+m) is at least 2, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In other embodiments, the compound is of the formula
Figure imgf000010_0002
where each n and m is, independently, an integer between 0-4; G is a bond, O, S, or NR2J; R2J is H or optionally substituted C1-6 alkyl; and where (n+m) is at least 2, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In other embodiments, the compound is of the formula
Figure imgf000010_0003
where G1 is a covalent bond or S(=O)2; each R2K, R2L, R2M, R2N, and R20 is selected, independently, from H, halogen, optionally substituted Cj.o alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl. optionally substituted heteroaryl, CN, NC, NO2, N3, OR2P, SR2P, S(-O)R2P, S(-O)2R2P, S(=O)OR2P, S(=O)2OR2P, NR?QR "R, C{ =0 S R2P. C(=O)OR2P, C(=O)NR2QR2R, C(=S)R2P, C(=S)OR2P, C(-S)NR2QR2R, C(=NR2S)R2Q, C(=NR2S)OR2Q, or C(=NR2S)NR2QR2R, or R2K and R2L, R2L and R2M, R2M and R2N, R2N and R20, or R2Q and R2R combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl; and each R2P, R , R , and R is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted hcteroaryl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof. In some embodiments, G1 Is S(~O)a- In other embodiments, G1 Ls a bond. Jn still other embodiments, each R, ϊl2L. Rm, R2N, and R20 is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, and 0-(optionally substituted C1-6 alkyl). In certain embodiments, R and R are H. In siil! other embodiments, at least one of R^, R?N, and R >o is O~(oplionally substituted C1-6 alkyl). In other embodiments, at least one of
R2M. R"1V, and R2° is optionally substituted Cf -6 alkyl. In some embodiments, at least one of R2M, R2N, and R20 is halogen.
In a second aspect, the invention features a pharmaceutical composition that includes a pharmaceutically acceptable excipient and any of the compounds of the invention described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In a third aspect the invention features a method of treating a condition in a subject, where the method includes the step of administering any of the compounds of the invention, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, to the subject in a dosage sufficient to decrease necroptosis. In some embodiments, the condition is a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, the result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, myocardial infarction, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft-versus-host disease, viral infection, Crohn's disease, ulcerative colitis, asthma, or any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor.
In some embodiments, the condition is one in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor. In some embodiments, these conditions are cancer or infection by viruses (acute, latent and persistent), bacteria, fungi, or by other microbes. In some embodiments, the infection is caused by a virus selected from human immunodeficiency virus (HIV), Epstein- Barr virus (EBV), cytomegalovirus (CMV)5 human herpesviruses (HHV), herpes simplex viruses (HSV), human T-CeIl leukemia viruses (HTL V) 5 Varicella-Zoster virus (VZV), measles virus, papovaviruses (JC and BK), hepatitis viruses, adenovirus, parvoviruses, and human papillomaviruses. In other embodiments, the infection is caused by bacteria selected from Campylobacter jejuni, Enterobacter species, Enterococcus faecium, ϋnterococcus faecal is, Escherichia coli (e.g., E. coli O157:H7), Group Λ streptococci, Haemophilus influenzae, Helicobacter pylori, listeria, Mycobacterium tuberculosis, Pseudomonas aeruginosa, S. pneumoniae, Salmonella, Shigella, Staphylococcus aureus, and Staphylococcus epidermidis.
In a third aspect, the invention features a method of decreasing necroptosis comprising contacting a cell with any of the compounds of the invention described herein, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In a fourth aspect, the invention features a kit including (a) a pharmaceutically acceptable composition comprising any of the compounds of the invention described herein , or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof; and (b) instructions for the use of the pharmaceutical composition of (a) to treat a condition in a subject. In any of the compositions, methods, or kits of the invention, the
compound is
Figure imgf000013_0001
(3), or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In any of the compounds, compositions, methods, or kits of the invention, the compound is any of Compounds (16)-(21), (22)-(36), (37)-(43), (44)-(52), or (53)-(65), or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof. In some embodiments, the compound is selected from the group consisting of:
Figure imgf000013_0002
Figure imgf000014_0001
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
By "C]-4 alkaryl" is meant a C]-4 alkyl group having an optionally substituted aryl or an optionally substituted heteroaryl located at any position of the carbon chain. The C1 -4 alkyl group may be linear or branched and may also be substituted with, for example, 1, 2, 3, 4, or 5 additional substituents as described herein.
By "alkoxy"' is meant a group having the structure -O(optionally substituted C] -6 alkyl), where the optionally substituted C1-6 alkyl may be branched, linear, or cyclic. The C1-6 alkyl may be substituted or unsubstituted. A substituted Cj.6 alkyl can have, for example, 1 , 2, 3? 4, 5, or 6 suhstituerrts located at any position. Exemplary alkoxy groups include, but are not limited to, methoxy, ethoxy, propoxy, isopropoxy, tert-butoxy, and the like. By "C2-6 alkenyl" or "alkenyl" is meant an optionally substituted unsaturated C2-6 hydrocarbon group having one or more carbon-carbon double bonds. Exemplary C2-6 alkenyl groups include, but are not limited to -CH=CH (ethenyl), propenyl, 2-propenyl, 2-methyl-l-propenyl, 1-butenyl, 2-butenyl, and the like. A C2.6 alkenyl may be linear or branched and may be unsubstituted or substituted. A substituted C2-6 alkenyl may have, for example, 1, 2, 3, 4, 5, or 6 substituents located at any position.
By "C1-6 alkyl" or "alkyl" is meant an optionally substituted C1-6 saturated hydrocarbon group. An alkyl group may be linear, branched, or cyclic ("cycloalkyl"). Examples of alkyl radicals include, but are not limited to, methyl, ethyl, n-propyl, isopropyl, n-butyl, iso-butyl, sec-butyl, sec pentyl, iso-pentyl, tert-butyl, n-pentyl, neopentyl, n-hexyl, sec-hexyl, n- heptyl, n-octyl, n-decyl, n-undecyl, dodecyl, and the like, which may bear one or more substituents. Substituted alkyl groups may have, for example, 1, 2, 3, 4, 5, or 6 substituents located at any position. Exemplary substituted alkyl groups include, but are not limited to, optionally substituted C1-4 alkaryl groups.
By ''C2-6 alkynyl" or "alkynyl" is meant an optionally substituted unsaturated C2.6 hydrocarbon group having one or more carbon-carbon triple bonds. Exemplary C2-6 alkynyl groups include, but are not limited to ethynyl. 1-propynyl, and the like
By "amino" is meant a group having a structure -NR' R", where each R' and R" is selected, independently, from H, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, or R' and R" combine to form an optionally substituted heterocyclyl. When R' is not H or R" is not H, R' and R" may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
By "aryl" is meant is an optionally substituted C6-Ci4 cyclic group with [4ft + 2] π electrons in conjugation and where n is 1, 2, or 3. Non-limiting examples of aryls include heteroaryls and, for example, benzene, naphthalene, anthracene, and phenanthrene. Aryls also include bi- and tri-cyclic ring systems in which a non-aromatic saturated or partially unsaturated carbocyclic ring (e.g., a cycloalkyl or cycloalkenyl) is fused to an aromatic ring such as benzene or naphthalene. Exemplary aryls fused to a non-aromatic ring include indanyl, tetrahydronaphthyl,. Any aryls as defined herein may be unsubstituted or substituted. A substituted aryl may be optionally substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents located at any position of the ring. By "aryloxy" is meant a group having the structure -O(optionally substituted aryl >, where aryl is as defined herein. By "azido" is meant a group having the structure -Nv
By "carbamate" or "carbamoyl" is meant a group having the structure -OCONR' R" or - NR5CO2R", where each R' and R" is selected, independently, from II, optionally substituted Ci.6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, or R' and R" combine to form an optionally substituted heterocyclyl. When R' a ' > nut Il or R" is not H, R' and R" may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5. or 6 substhuents.
By "carbonate" is meant a group having a the structure -OCO^R', where R' is selected from H, optionally substituted C1^6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl. When R' is not H, R may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
By '"earboxarnido5" or '"amido'" is meant a group having the structure -CONR'R" or -NR'C(-0)R", where each R' and R" is selected, independently, from H, optionally substituted Ci-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted hetεroaryl, or R' and R" combine io form an optionally substituted heterocyclyl. When R' is not f-ϊ or R"' is not H, K" and R"' may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents.
By "carboxylic group" is meant a group having the structure -CO2R', where R' is selected from H, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl. When R' is not H, R may be unsubstituted or substituted with, for example, I5 2. 3, -4, 5, or 6 substituents. By "cyano" is meant a group having the structure -CN. By "C3..1() cycloalkyl" or "cycloalkyl" is meant an optionally substituted, saturated or partially unsaturated 3- to 10-membered monocyclic or poly cyclic (e.g., bicyclic, or tricyclic) hydrocarbon ring system. Where a cycloalkyl is polycyclic, the constituent cycloalkyl rings may be fused together, form a spirocyclic structure, or the polycyclic cycloalkyl may be a bridged cycloalkyl (e.g., adamantyl or norbonanyl) . Exemplary cycloalkyls induce cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloheptyl. Cycloalkyls may be unsubstituted or substituted. A substituted cycloalkyl can have, for example, 1 , 2, 3, 4, 5, or 6 substituents.
By "cycloalkenyl" is meant a non-aromatic, optionally substituted 3- to 10-membered monocyclic or bicyclic hydrocarbon ring system having at least one carbon-carbon double bound. For example, a cycloalkenyl may have 1 or 2 carbon-carbon double bonds. Cycloalkenyls may be unsubstituted or substituted. A substituted cycloalkenyl can have, for example, 1, 2, 3, 4, 5, or 6 substituents. Exemplary cycloalkenyls include, but are not limited to, cyclopropenyl, cyclobutenyl, cyclopentenyl, cyclopentadienyl, cyclohexenyl, 1,3-cyclohexadienyl, 1,4-cyclohexadienyl, and the like.
By "effective amount" or "therapeutically effective amount" of an agent, as used herein, is that amount sufficient to effect beneficial or desired results, such as clinical results, and, as such, an effective amount depends upon the context in which it is being applied. For example, in the context of administering an agent that is an inhibitor of necroptosis, an effective amount of an agent is, for example, an amount sufficient to achieve a reduction in necroptosis as compared to the response obtained without administration of the agent.
By "ester" is meant a group having a structure selected from -OCOR', where R' is selected from H, optionally substituted C1^ alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl. When R' is not H, R may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents. By "haJogcfT or "halo" is meant fluorine (-F), chlorine (-Cl), bromine (-Br), or iodine (-1).
By "heteroaryl" is mean an aryl group that contains 1, 2, or 3 heteroatoms in the cyclic framework. Exemplary heteroaryls include, but are not limited to, furan, thiophene, pyrrole, thiadiazole (e.g., 1,2,3-thiadiazole or 1,2,4-thiadiazole), oxadiazole (e.g., 1,2,3-oxadiazole or 1,2,5-oxadiazole), oxazole, benzoxazole, isoxazolc, isothiazole, pyrazole, thiazole, benzthiazole, triazole (e.g., 1 ,2,4-triazole or 1,2,3-triazole), benzotriazole, pyridines, pyrimidines, pyrazines, quinoline, isoquinoline, purine, pyrazine, pteridine, triazine (ε.g, LzJ-triazine, 1 ,2,4-triazine, or U.S-tπazine )indoles, 1 ,2,4,5- tetrazine, befS7ϋ[Z>jthiophene, benzo[cj thiophene, bcnzo furan, isobenzofuran, and benzimidazole. Heteroaryls may be unsubstituted or substituted.
Subsiiuied heteroaryls can have, for example, 1 , 2, 3, 4, 5, or 6 subsitutents. By "heterocyclic" or "heterocyclyi'" is meant an optionally substituted non-aromatic, partially unsaturated or fully saturated, 3- to 10 membered ring system, which includes single rings of 3 to 8 atoms in size, and polycyclic ring systems (e.g., bi- and tri-cyclic ring systems) which may include an aryl (e.g., phenyl or naphthyl) or heteroaryl group that is fused to a non-aromatic ring (e.g., cycloalkyl, cycloalkenyl, or heterocyclyl), where the ring system contains at least one heterotom. Heterocyclic rings include those having from one to three heteroatoms independently selected from oxygen, sulfur, and nitrogen, in which the nitrogen and sulfur heteroatoms may optionally be oxidized and the nitrogen heteroatom may optionally be quaternized or substituted. In certain embodiments, the term heterocylic refers to a non-aromatic 5-, o-, or 7- membered monocyclic ring wherein at least one ring atom is a heteroatom selected from O, S, and N (wherein the nitrogen and sulfur heteroatoms may be optionally oxidized), and the remaining ring atoms are carbon, the radical being joined to the rest of the molecule via any of the ring atoms. Where a heterocycle is polycyclic, the constituent rings may be fused together, form a spirocyclic structure, or the polycyclic heterocycle may be a bridged heterocycle (e.g., quinuclidyl or . Exemplary heterocyclics include, but arc not limited to, aziridinyl, azetindinyl, 1,3-diazatidinyl, pyrrolidinyl, piperidinyl, piperazinyl, thiranyl, thietanyl, tetrahydrothiophenyl, dithiolanyl, tetrahydrothiopyranyl, oxiranyl, oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, pyranonyl, 3,4-dihydro-2H-pyranyl, chromenyl, 2H-chromen-2-onyl, chromanyl, dioxanyl (e.g.. 1,3-dioxanyl or 1,4-dioxanyl), 1 ,4-benzodioxanyl, oxazinyl, oxathiolanyl, morpholinyl, thiomorpholinyl, thioxanyl, quinuclidinyl, and also derivatives of said exemplary heterocyclics where the heterocyclic is fused to an aryl (e.g., a benzene ring) or a heteroaryl (e.g., a pyridine or pyrimidine) group. Any of the heterocyclic groups described herein may be imsubsiituted or substituted. A substituted heterocycle may have, for example, 1, 2, 3, 4, 5, or 6 substituents. By "ketone" or "acyl" is meant a group having the structure -COR', where R' is selected from H, optionally substituted Ci-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl. When R' is not H, R may be unsubstituted or substituted with, for example, 1, 2, 3, 4, 5, or 6 substituents. By '"nitrυ" is meant a group having the structure NO2.
A "pharmaceutically acceptable excipient" as used herein refers any ingredient other than the compounds described herein (for example, a vehicle capable of suspending or dissolving the active compound) and having the properties of being nontoxic and non-infiaπiπiaiorv in a patient, Excipients may include, for example: antiadherents, antioxidants, binders, coatings, compression aids, disintεgrants, dyes (colors K emollients, cniulsificrs, fillers (diluents), film formers or coatings, flavors, fragrances, glidants (flow enhancers), lubricants, preservatives, printing inks, sorbents, suspensing or dispersing agents, sweeteners, or waters of hydration. Exemplary excipients include, but are not limited to: butylated hydroxytoluene (BHT), calcium carbonate, calcium phosphate (dibasic), calcium stearate, croscarmellose, crosslinked polyvinyl pyrrolidone, citric acid, crospovidone, cysteine, ethylcellulose, gelatin, hydroxypropyl cellulose, hydroxypropyl methylcellulose, lactose, magnesium stearate, maltitol, mannitol, methionine, methylcellulose, methyl paraben, microcrystalline cellulose, polyethylene glycol, polyvinyl pyrrolidone, povidone, pregelatinized starch, propyl paraben, retinyl palmitate, shellac, silicon dioxide, sodium carboxymethyl cellulose, sodium citrate, sodium starch glycoiate, sorbitol, starch (com), stearic acid, stearic acid, sucrose, talc, titanium dioxide, vitamin A, vitamin E, vitamin C, and xylitol. The term "pharmaceutically acceptable salt," as used herein, represents those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and animals without undue toxicity, irritation, allergic response and the like and are commensurate with a reasonable benefit/risk ratio. Pharmaceutically acceptable salts are well known in the art. For example, S. M Berge et al. describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1911 , 66:1-19. The salts can be prepared in situ during the final isolation and purification of the compounds of the invention or separately by reacting the free base group with a suitable organic acid. Representative acid addition salts include acetate, adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphersulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, fumarate, glucoheptonate, glycerophosphate, hemisulfate, heptonate, hexanoate, hydrobromide, hydrochloride, hydroiodide, 2-hydroxy- ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-phenylpropionate, phosphate, picrate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, toluenesulfonate, undecanoate, valerate salts and the like. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium and the like, as well as nontoxic ammonium, quaternary ammonium, and amine cations, including, but not limited to ammonium, tetramethylammonium, tetraethylammonium, methylamine, dimethylamine, trimethylamine. triethylamine, ethyl amine and the like.
The term "pharmaceutically acceptable solvates," as used herein, refers to compounds that retain non-covalent associations to residual solvent molecules in the solid state. For example, solvates may be prepared by crystallization, recrystallization, or precipitation from a solution that includes organic solvents, water, or a mixture thereof. Solvates include, but are not limited to, compounds that include solvent molecules in the crystal lattice following recrystallization. The molecular stoichiometry of solvation can vary from, for example, 1:1 solventxompound to 10:1 solvent xompound. These ratios can include a mixture of associated solvent molecules. Exemplary, non- limiting examples of solvents that can form solvates with the compounds of the invention include water (for example, mono-, di-, and tri-hydrates), N- methylpyrrolidinone (ΝMP), dimethyl sulfoxide (DMSO), NN'- dimethylformamide (DMF), N5N '-dimethylacetamide (DMAC), 1 ,3-dimethyl- 2-imidazolidinone (DMEU), l,3-dimethyl-3,4,5,6-tetrahydro-2-(lH)- pyrimidinone (DMPU), acetonitrile (ACΝ), propylene glycol, ethyl acetate, benzyl alcohol, 2-pyrrolidone, benzyl benzoate, or any combination thereof. By "pharmaceutical composition" is meant a composition containing a compound of the invention, formulated with a pharmaceutically acceptable excipient, and manufactured or sold with the approval of a governmental regulatory agency as part of a therapeutic regimen for the treatment of disease in a mammal. Excipients consisting of DMSO are specifically excluded. Pharmaceutical compositions can be formulated, for example, for oral administration in unit dosage form (e.g., a tablet, capsule, caplet, gelcap, or syrup); for topical administration (e.g., as a cream, gel, lotion, or ointment); for intravenous administration (e.g., as a sterile solution free of particulate emboli and in a solvent system suitable for intravenous use); or any other formulation described herein. By "stereoisomer" is meant a diastereomer, enantiomer, or epimer of a compound. A chiral center in a compound may have the ^-configuration or the ^-configuration. Enantiomers may also be described by the direction in which they rotate polarized light (i.e., (+) or (-)). Diastereomers of a compound include stereoisomers in which some, but not all, of the chiral centers have the opposite configuration as well as those compounds in which substituents are differently oriented in space (for example, frans versus cis).
Where a group is substituted, the group may be substituted with L 2, 3, 4. 5, or 6 substituents. Optional substituents include, but are not limited to: C1- 6 alkyl. C2-6 alkenvl, C2.6 alkynyl, cycloalkyL cycloalkenyl, heterocyclyl, aryl, heteroaryl, halogen; azido(-N3), nitro (-NO2), cyano (-CN), acyloxy(-OC(=O)R'), acyl (-C(=O)R'), alkoxy (-OR'), amido (-NR'C(=0)R" or -C(O)NRR'), amino (-NRR'), carboxylic acid (-CO2H), carboxylic ester (- CO2R'), carbamoyl (-OC(=O)NR'R" or -NRC(=0)0R'), hydroxy (-OH), isocyano (-NC), sulfonate (-S(O)2OR), sulfonamide (-S(=O)2NRR' or - NRS(O)2R" I or sulfonyl (-5(-O)Jl), where each R or R" Is selected, independently, from H, C1-6 alkyl, C2.6 alkenyl, C2-6 alkynyl, cycloalkyl, heterocyclyl, aryl, or heteroaryl. A substituted group may have, for example, L 2, 3, 4, 5, 6, 7, 8, or 9 substituents. In some embodiments, each hydrogen in a group may be replaced by a substituent group (e.g., perhaloalkyl groups such as -CF3 or -CF2CF3 or perhaloaryls such as -C6F5). In other embodiments, a substituent group may itself be further substituted by replacing a hydrogen of said substituent group with another substituent group such a& those described herein. Substituents may be further substituted with, for example, 1 , 2, 3, 4. 5, or 6 substituents as defined herein, tor example, a lower CY* alkyl or an aryl substituent group (e.g., heteroaryl, phenyl, or naphthyl) may be further substituted with 1, 2, 3, 4, 5, or 6 substituents as described herein. Brief Description of the Drawings
Fig. 1 shows that Compound (3) does not inhibit recombinant RIPl kinase.
Detailed Description of the Invention
We have discovered a series of heterocyclic derivatives that inhibit tumor necrosis factor alpha (TNF-α)-induced necroptosis. The heterocyclic compounds of the invention are described by Formulas (I) and (II) and are shown to inhibit TNF-α induced necroptosis in FADD-deficient variant of human Jurkat T cells. Pharmaceutical compositions including the compounds of the invention arc also described. The invention also features kits and methods of treatment featuring the compounds and compositions of the invention.
Compounds of the invention can be described generally by Formula (I):
Figure imgf000023_0001
(I), where each X1, X2, X3, X4, X5, and X6 is selected, independently, from N or
CR XI , each Y „ Y . and Y" is selected, independently, from O, S, NR Yl , or
CRY2RY3; each Z1 and Z2 is selected, independently, from O, S, or NRZI ; each Rγl and RZ1 is selected, independently, from H, optionally substituted Ci-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, -
Figure imgf000023_0002
-C(=O)OR5A, or -C(-O)NR5AR6A; each RX1, RY2, and RY3 is selected, independently, from H, halogen, CN, NC, NO2, N3, OR3, SR3, NR3R4, -Cf " O)R5 \ -C0-O/JR5\ -C(=O)NR5AR6A, - S(O)R5A, -S(=O)2R5A, -S(=O)2OR5A, -S(=O)2NR5AR6A, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl; each R1, R2, R5A, R5B, R6A, and R6B is selected from H, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R5A and R6A, or R5B and R6B combine to form a heterocyclyl; and each R3 and R4 is selected from H, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, -C(=O)R5B, ~C(=S)R5B, -C(-NR6B)R5B, -C(O)OR50, -C(=O)NR5BR6B, -S(O)R5B, -S(O)2R5B, - S(0)2OR5B, or -S(=O)2NR5BR6B; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In some embodiments, when R1 is H5 X!, X2, and X4 are each CH, X3 and X- are each N, Y1 is S, Y2 is NH, Z1 is NH, and Z2 is O, R2 is not 4- fluorophenyl.
A further embodiment is described by Formula (II):
Figure imgf000024_0001
(II), where
X1, X2, X4, X5, R1, Y2, and RZ1 are as defined for Formula (I); each R2A, R2B, R2C, R2D, and R2E is selected, independently, from H, halogen, optionally substituted Ci-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, CN, NC, NO2, N3, OR7, SR7, S(-O)R12, SC-O)2R12, S(O)OR12, S(O)2OR1I NR7R8, C(=O)R12, C(O)OR12, C(=OjNRf 2R33, Q=S)R12, CY=S)OR12, Cl-SjNR12R1I C(=NR9)R12, C(-NR9)OR12, or C(=NR9)NR12R13, or R24 and R2B. R and R2C, R~c and R2D ; or R2D and R2E combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl; each R7, R8, and R9 is selected, independently, from H, optionally substituted Ci. «5 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, S(O)R ! 0, S(O)^R1". C(O)Rf ft, CC=O)OR10, CrO)NR10R11. C(- SjR1I C(=SjOR10, C(=S)NR10Rπ. C(-NR14)R10, C(=NR1J)OR10, or C(-:-NR14)NRR! i ; or R'' and R8 combine to form an optionally substituted hctcrocycM; and each R10, R11, R12, R1', and R14 is selected, independently, from H, optionally substituted C^0 alkyl. optionally substituted C2^. alkenyL optionally substituted Q->-0 alkynyl, optionally substituted cycloalkyL optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R10 and R11 or R12 and R!3 combine to form an optionally substituted heterocyclyl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
Compounds of the invention may also be described by Formula (H-A):
Figure imgf000025_0001
(II- A), where each R1, R, R2B, R2C, R2D, R2E, RY1, RZ1 ; R\ R4, R5A R6A. R7, R\ R9 ; and R12 is as defined in Formula (II); and where each RX1A and RX1B is selected, independently, from H, halogen, CN, NC, NO2, Ni. OR3, NR3R4, -C(O)R5A, -C(O)0R5A, -C( O)NR5V, -S(O)?R, -S(=O)?OR5A, -S(=O)>MRK6A, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
In a further embodiment, the compounds of the invention may be described according to Formula (H-B):
Figure imgf000026_0001
(II-B), where
RX1B is selected from H, halogen, CN, NC, NO2, N3, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl. - C(=O)R5A, -C(=O)OR5A, or -C(-O)NRR6A; each R2A, R2B, R2C, R2D, and R2E is selected, independently, from H, halogen, CN, NC, NO2, N3, OR7, NR7R8, SR7, Q=O)R1 °, C(=O)OR10, C(O)NR10R11, S(=O)R12, S(=O)2R12, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R2A and R23, R2B and R2C, R2C and R?D, or R2D and R2E combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl; and where each R5A. R6A, R7, K\ R10, R11, and R12 is as defined in Formula
(H) or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
Exemplary compounds of the invention include compounds of Formula (II-C) such as those shown in Table 1: Table 1
Figure imgf000027_0001
Additional exemplary compounds include those of Formula (II-B-1) such as those described in Table 2
Table 2
Figure imgf000028_0001
Figure imgf000029_0001
21
Figure imgf000030_0001
Figure imgf000031_0001
Additional exemplary compounds include those of Formula (II-B-2) such as those described in Table 3.
Table 3
Figure imgf000031_0002
Figure imgf000032_0001
30 Still further compounds are those of Formula (II-B-3) as shown in Table
4.
Table 4
Figure imgf000033_0001
Figure imgf000034_0001
Other compounds of the invention include those of Formula (II-D), including the compounds shown in Table 5.
Table 5
Figure imgf000035_0001
Figure imgf000036_0001
Figure imgf000037_0001
Compounds of the invention can be synthesized according to methods known in the art or by the methods provided in the examples below. The synthesis of (3) is outlined in Scheme 1 and the procedures described herein can be used to prepare the other compounds of the invention. 2-Aminothiazole was acylated with 2-chloroacetyl chloride followed by treatment with potassium thiocyanate to form the thiazolidone (1) (Kwon et al., J. Heterocyclic Chem. 20: 1725 (1983)). The semicarbazone of 4-fluoroacetophenone was treated with Vilsmeier-Haack reagent to afford pyrrazolc (2) (Kira et al., J Heterocycl. Chem. 2: 25 (1970) and Baraldi et al. Synthesis, 10: 1140 (1997)). Compound (3) was derived from a Knoevenagel condensation of (1) and (2) with the aid of sodium acetate anhydrous in glacial acetic acid (Kwon et al., J. Heterocyclic Chem. 20: 1725 (1983)).
Scheme 1
Figure imgf000038_0001
Reagents and conditions: (a) 2-chloroacetyi chloride, Ei 5N, CH7CI2, 0° to room temperature. 53%: (b) KSCN, EtOH, reflux, 85%; (c) H,NHNCONH2-HC1, NaOAc, CH1OHZH-A 98%; (d) (I)POCl3-DMF'', (H) 1O0ZoNaOH5 (Hi) I O N HCl 86%; (ε) NaOAc, HOAc, reflux, 91%.
Pharmaceutical Compositions
Compounds of the invention (e.g., compounds of Formulas (I) and (H)) can be formulated into pharmaceutical compositions for administration to human subjects in a biologically compatible form suitable for administration in vivo. Accordingly, the present invention provides a pharmaceutical composition comprising a compound of the invention in admixture with a pharmaceutically acceptable excipient. Conventional procedures and ingredients for the selection and preparation of suitable formulations are described, for example, in Remington's Pharmaceutical Sciences (2003 - 20th edition) and in The United States Pharmacopeia: The National Formulary (USP 24 NF 19), published in 1999.
The compounds of the invention may be used in the form of the free base, in the form of salts, solvates, and as prodrugs. All forms are within the scope of the invention, In accordance with the methods of the invention, the described compounds or salts, solvates, or prodrugs thereof may be administered to a patient in a variety of forms depending on the selected route of administration, as will be understood by those skilled in the art. The compounds of the invention may be administered, for example, by oral, parenteral, buccal, sublingual, nasal rectal, patch, pump, or transdermal administration and the pharmaceutical compositions formulated accordingly. Parenteral administration includes intravenous, intraperitoneal, subcutaneous, intramuscular, transepithelial, nasal, intrapulmonary, intrathecal, rectal, and topical modes of administration. Parenteral administration may be by continuous infusion over a selected period of time.
Pharmaceutically Acceptable Excipients
Pharmaceutically acceptable excipients may include, for example: antiadherents, antioxidants, binders, coatings, compression aids, dϊsintegrants, dyes (colors), emollients, emulsifiers, fillers (diluents), film formers or coatings, flavors, fragrances, glidants (flow enhancers), lubricants, preservatives, printing inks, sorbents, suspensing or dispersing agents, sweeteners, or waters of hydration. Exemplary excipients include, but are not limited to: butylated hydroxytoluene (BHT), calcium carbonate, calcium phosphate (dibasic), calcium stearate, croscarmellose, crosslinked polyvinyl pyrrolidone, citric acid, crospovidone, cysteine, ethylcellulose, gelatin, hydroxypropyl cellulose, hydroxypropyl methylcellulose, lactose, magnesium stearate, maltitol, mannitol, methionine, methylcellulose, methyl paraben, microcrystalline cellulose, polyethylene glycol, polyvinyl pyrrolidone, povidone, pregelatinized starch, propyl paraben, retinyl palmitate, shellac, silicon dioxide, sodium carboxymethyl cellulose, sodium citrate, sodium starch glycolate, sorbitol, starch (corn), stearic acid, stearic acid, sucrose, talc, titanium dioxide, vitamin A, vitamin E, vitamin C, and xylitol.
Oral Administration
A compound of the invention may be orally administered, for example, with an inert diluent or with an assimilable edible carrier, or it may be enclosed in hard or soft shell gelatin capsules, or it may be compressed into tablets, or it may be incorporated directly with the food of the diet. For oral therapeutic administration, a compound of the invention may be incorporated with an excipient and used in the form of ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, and the like.
Parenteral Administration A compound of the invention may also be administered parenterally.
The pharmaceutical forms suitable for injectable use include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. In all cases the form must be sterile and must be fluid to the extent that may be easily administered via syringe.
Nasal Administration
Compositions for nasal administration may conveniently be formulated as aerosols, drops, gels, and powders. Aerosol formulations typically include a solution or fine suspension of the active substance in a physiologically acceptable aqueous or non-aqueous solvent and are usually presented in single or multidose quantities in sterile form in a sealed container, which can take the form of a cartridge or refill for use with an atomizing device. Alternatively, the sealed container may be a unitary dispensing device, such as a single dose nasal inhaler or an aerosol dispenser fitted with a metering valve which is intended for disposal after use. Where the dosage form comprises an aerosol dispenser, it will contain a propellant, which can be a compressed gas, such as compressed air or an organic propellant, such as fluorochlorohydrocarbon. The aerosol dosage forms can also take the form of a pump-atomizer.
Buccal or Sublingual Administration
Compositions suitable for buccal or sublingual administration include tablets, lozenges, and pastilles, where the active ingredient is formulated with a carrier, such as sugar, acacia, tragacanth, or gelatin and glycerine. Compositions for rectal administration are conveniently in the form of suppositories containing a conventional suppository base, such as cocoa butter. The compounds of the invention may be administered to an animal alone or in combination with pharmaceutically acceptable carriers, as noted above, the proportion of which is determined by the solubility and chemical nature of the compound, chosen route of administration, and standard pharmaceutical practice.
Dosage Amounts
The amount of active ingredient in the compositions of the invention can be varied. One skilled in the art will appreciate that the exact individual dosages may be adjusted somewhat depending upon a variety of factors, including the protein being administered, the time of administration, the route of administration, the nature of the formulation, the rate of excretion, the nature of the subject's conditions, and the age, weight, health, and gender of the patient. Generally, dosage levels of between 0.1 μg/kg to 100 mg/kg of body weight are administered daily as a single dose or divided into multiple doses. Desirably, the general dosage range is between 250 μg/kg to 5.0 mg/kg of body- weight per day. Wide variations in the needed dosage are to be expected in view of the differing efficiencies of the various routes of administration. For instance, oral administration generally would be expected to require higher dosage levels than administration by intravenous injection. Variations in these dosage levels can be adjusted using standard empirical routines for optimization, which are well known in the art. In general, the precise therapeutically effective dosage will be determined by the attending physician in consideration of the above identified factors.
Therapeutic Uses and Screening Methods
Compounds disclosed herein can be used to treat disorders where necroptosis is likely to play a substantial role, e.g., cerebral ischemia, traumatic brain injury, a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, ihc result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, myocardial infarction, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft-versus-host disease, viral infection, Crohn's disease, ulcerative colitis, asthma, or any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor. Compounds of the invention can also be used in screening methods to identify targets of necroptosis and to identify additional inhibitors of necroptosis, as well as in assay development.
Compounds disclosed herein can be evaluated for their pharmacological properties in animal models of disease. The compounds identified to decrease necrosis or necroptosis may be structurally modified and subsequently used to decrease necrosis or necroptosis, or to treat a subject with a condition in which necrosis or necroptosis occurs. The methods used to generate structural derivatives of the small molecules that decrease necrosis or necroptosis are readily known to those skilled m the fields of organic and medicinal chemistry. Therapy according to the invention may be performed alone or in conjunction with another therapy, for example in combination with apopiosis inhibitors, and may be provided at home, the doctor's office, a clinic, a hospital's outpatient department, or a hospital. Treatment generally begins at a hospital so that the doctor can observe the therapy's effects closely and make any adjustments that are needed. The duration of the therapy depends on the age and condition of the patient, as well as how the patient responds to the treatment. Additionally, a person having a greater risk of developing a condition may receive prophylactic treatment to inhibit or delay symptoms of the disease.
In some embodiments, the compounds and methods of the invention can be used to treat any of the following disorders where necroptosis is likely to play a substantial role: a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, the result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal lailυre; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, myocardial infarction, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft- versus-host disease, viral infection, bacterial infection. Crohn's disease, ulcerative colitis, asthma, and any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor.
Conditions Caused by Alteration in Cell Proliferation. Differentiation, or Intracellular Signaling Conditions in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor include cancer and Infeαloru e.g., by viruses (e.g., acute, latent and persistent), bacteria, fungi, or other microbes.
Exemplary viruses are human immunodeficiency virus (HIV), Epstein- Barr virus (EBV), cytomegalovirus (CMV)5 human herpesviruses (HHV), herpes simplex viruses (HSV), human T-CeIl leukemia viruses (HTL V)5 Varicella-Zoster virus (VZV), measles virus, papovaviruses (JC and BK), hepatitis viruses, adenovirus, parvoviruses, and human papillomaviruses. Exemplary diseases caused by viral infection include, but are not limited to, chicken pox. Cytomegalovirus infections, genital herpes, Hepatitis B and C, influenza, and shingles.
Exemplary bacteria include, but are not limited to Campylobacter jejuni, Enterobacter species, Enterococcus faecium, Enterococcus faecalis, Escherichia coli (e.g., F. coli O157:H7), Group A streptococci, Haemophilus influenzae, Helicobacter pylori, listeria, Mycobacterium tuberculosis, Pseudomonas aeruginosa, S. pneumoniae, Salmonella, Shigella, Staphylococcus aureus, and Staphylococcus epidermidis. Exemplary diseases caused by bacterial infection include, but are not limited to, anthrax, cholera, diphtheria, foodborne illnesses, leprosy, meningitis, peptic ulcer disease, pneumonia, sepsis, tetanus, tuberculosis, typhoid fever, and urinary tract infection.
Neurodegenerative Diseases
Exemplary neurodegenerative diseases are Alzheimer's disease, Huntington's disease, Parkinson's disease, amyotrophic lateral sclerosis, HIV- associated dementia, cerebral ischemia, amyotropic lateral sclerosis, multiple sclerosis, Lewy body disease, Menke's disease, Wilson's disease, Creutzfeldt- Jakob disease, and Fahr disease. Exemplary muscular dystrophies or related diseases are Becker's muscular dystrophy, Duchenne muscular dystrophy, myotonic dystrophy, limb-girdle muscular dystrophy, Landouzy-Dejerine muscular dystrophy, facioscapulohumeral muscular dystrophy (Steinert's disease), myotonia congenita, Thomsen's disease, and Pompe's disease. Muscle wasting can be associated with cancer, AIDS, congestive heart failure, and chronic obstructive pulmonary disease, as well as include necrotizing myopathy of Intensive care.
Compounds and methods of the invention can additionally be used to boost the immune system, whether or not the patient being treated has an immunocompromising condition. For example, the compounds described herein can be used in a method to strengthen the immune system during immunization, e.g., by functioning as an adjuvant, or by being combined with an adjuvant.
Kits
Any of the compounds or pharmaceutical compositions of the invention (e.g., compounds of Formulas (I) and (II)) can be used together with a set of instructions, i.e., to form a kit. The kit may include instructions for use of the compounds of the invention in a screening method or as a therapy as described herein. The following non-limiting examples are illustrative of the present invention.
EXAMPLES Example 1: Synthesis of Compound (3)
Synthesis ofThiazolidone (1)
Scheme 2 KSCN
Figure imgf000045_0001
Figure imgf000045_0002
(11) (12) (1)
The solution of 2~aminothiazole (Ii) (5 rnrnol) and triethylamine (0.7 mL) in distilled THF (20 niL) was cooled with an ice- water bath. A solution of 2-chloroacetyl chloride (0.4 mL) was added dropwise to above solution with stirring. The resulting mixture was stirred for another 3 hours ai room temperature. The solvent was removed in vacuo and dichloromethane (30 mL) and water (30 mL) were added to the residue. The organic phase was separated and the aqueous phase was extracted with dichloromethane (20 mL * 3). The combine organic phases were washed sequentially with 2N HCl, saturated aqueous NaHCO3, brine (saturated aqueous NaCl), and then dried over Na2SO4. Removal of the solvent afforded the solid (12) (630 mg, 72%). Further purification can be conducted through crystallization from elhanol/water. The solution of amide (12) (2 mmol) and potassium thiocyanate (2 mmol) in ethanol (15 mL) was heated to reflux and reacted for 8 hours. The reaction was then cooled to room temperature. The precipitate was collected by suction filtration and washed with water (10 mL x 3) and ethanol. After drying, thiazolidone (1) was obtained (320 mg, 80%). Melting point: 205-207 ° C ; 1H NMR(DMSO, 300MHz) 63.97(S,
2H5 -CH2-), 7.36(d, IH, Thiazole, J=3.6Hz), 7.56(d, IH, Thiazole, J=3.6Hz), 12.0(brs, IH, -NH); EIMS 200(M+ i l)(6.10), 199(M+)(47.74), 166(47.76),
126(54.37), 125(61.55), 58(100, Base): IR(Cm'1) 31 15, 3087, 2826, 1716, 1596, 1141; Anal. Calcd for C6H5N3OS2 : C, 36.17; H, 2.53; N, 21.09; Found : C, 36.39; H, 2.47; N, 21.43.
Synthesis ofDiazole (2) Scheme 3
(13)
Figure imgf000046_0001
A solution of acetophenone (13) (10 mmol) in methanol (15 mL) was added dropwise to a solution of hydrochloride aminocarbonhydrazine (10 mmol) and sodium acetate (10 mmol) in water (10 mL) at room temperature and with stirring. The resulting mixture was stirred for another 3 hours. The precipitate was filtered, washed with water (10 mL x 2) and anhydrous ethyl ether (5 mL). The white solid (14) was dried under air (1.9 g, 98%) and the product was sufficiently pure for the next step. The ketone semicarbazone (14) (5 mmol) was added, portionwise with stirring, to a mixture of phosphorus oxychloride-dimethylformamide. The latter was prepared by the slow addition of POCl3 (1 1 mmol) to DMF (22mmol) at 0 ° C. The reaction mixture was heated at 60-70 ϋ C for about 4 hours and then poured onto cracked ice (10 g). The resulting mixture was neutralized with NaOH (2 g in 8 mL water), heated at 50-60 ° C for 5 minutes, and cooled. Impurities were then removed by filtration. The filtrate was acidified to pH - 5-6 using IO N HCl. The resulting precipitated solid was collected by filtration and washed with water. The product (2) was dried in the air (712 mg, 75%). If needed, the solid was further purified by crystallization from ethanol/water. Melting point 163-165 c C; 1H NMR(CDCl3, 300MHz) 87.17-7.28(m, 3H, 0-ArH, -NH-), 7.69-7.74(m, 2H, m-ArH), 8.18(s, IH, Pyrazole), 9.97(s, IH, -CHO); EIMS 191(M++1)(12.62), 190(M+)(IOO, Base), 189(M+-H)(93.84); IR(Cm"1) 3165, 2897, 1646, 1517, 1481, 1250, 931; Anal. Calcd for C10H7FN2O : C, 63.16; H, 3.71 ; N, 14.73; Found : C, 63.16; H, 3.71; N, 15.06.
Synthesis of Compound (3)
Scheme 4
Figure imgf000047_0001
(1) (2) (3) A mixture of compound (1) (0.7 mmol), compound (2) (0.71 mmol), sodium acetate (2 mmol), and acetic acid (4 mL) was heated to 1 10 ° C and stirred for 14 hours at this temperature. Solid precipitated during the course of the reaction. After cooling to room temperature, the system was poured into 50 mL of water. The precipitate was collected by suction filtration and washed with water and ethanol. The crude product was dried and 1OmL ethanol were added. The mixture was heated to 80 ° C for several minutes and the cooled. Compound (3) was collected by filtration and dried to afford a yellow solid (236mg, 91%).
Melting point >300 ° C; !H NMR(DMSO, 300MHz) δ7.42-7.50(m, 4H), 7.60-7.65(m, 2H), 7.73(d, IH, J =3.6Hz)5 7.91+7.19(brs, IH), 12.54(brs, IH, =NH), 13.68+13.86(brs, IH, -NH-); EIMS:371(M+)(4.87), 370(17.68), 234(24.34), 209(21.97), 207(21.96), 178(19.86), 165(40.10), 91(100, base), 44(37.30), 41(20.31); IR(Cm'1) 3200, 1713, 1593, 1498, 1438, 1304, 1 192, 1 132, 846; Anal Calcd for C16H10FN5OS2 : C, 51.74; H, 2.71 ; N, 18.86; Found : C, 51.68; H, 2.87; N, 19.06. Synthesis of Related Compounds
This procedure described for the synthesis of compound (3) can be used to prepare the other compounds of the invention by variation of the reagents.
In order to study of the influence of pyrazole ring of (3), derivatives with other aromatic heterocycles in place of pyrazole were synthesized, such as triazole and isoxazole (see Schemes 5-7). For example, derivatives (10) were prepared through condensation of these various carboxaldehyde derivatives (7). (8) or (9) with thiazolidone (1).
The requisite phenylpropiolaldehyde starting material was prepared from the corresponding p-substituted benzaldehyde through a Corey-Fuchs reaction (Journet et al., Tetrahedron Lett. 39: 6427 (1998)) and then cyclized with sodium azide in DMSO at room temperature to form 5-aryl-4- carbaldehyde-l,2,3-trizazoles (7a)-(7d) (Scheme 5; Journet et al., Tetrahedron Lett. 42: 9117 (2001)), where, respectively, R is H, Cl, OCII3, or F.
Scheme 5
Figure imgf000048_0001
Reagents and conditions: (a) CBr4, PPh3, CH2Cl2, 0 0C -rt, 81 -88%; (b) i) n-BuLi, -78°C, ii) DMF, iii) 10%KH3PO4, 64-71%; (c) i) NaN-,. DMSO,rt, n) 15%KH2PO4 41-61%
The iV-hydroxybenzimidoyl chloride derived from chlorination of benzaldehyde oxime by N-chlorosuccinimide (NCS; Shang et al., Synthesis 12: 1663 (2002)) was treated with 3-dimethylaminoacrolein in the presence of triethylamine to generate the isoxazole carboxaldehydes (8a)-(8d) via a 1,3- dipolar cycloaddition (Scheme 6; Balsamo et al., Eur. J. Med. Chem. Chim. Ther. 38: 157 (2003)), where, respectively, R is CL F, Me, or NO2. Scheme 6
-CHO —5-»- R-\ /," .
Λ
Figure imgf000049_0001
3a-d
Reagents and conditions: (a) HO-NH2-HCl, K2CO3, EtOH, rf, 80-94%; (b) NCS, CH2Cl2, rt, 50-54%; (c) 3-dimethylaminoacrolein, Et3N, THF, rt, 42-93%
The N atom of pyrazole can easily react with electrophilic reagents in the present of potassium carbonate at room temperature, such as iodom ethane, bromoacetonitrile and benzyl bromide. The main products were N-substituted 3-aryl-4-carboxaldehydepyrazoles (9) (Scheme 7). Scheme 7
Figure imgf000049_0002
Reagents and conditions: (a) RX, K2CO3, CH3CN. ri, 65-91%.
Example 2: Evaluation of Necroptosis Inhibitory Activity
For EC50 value determinations, cells were treated with 10 ng/mL of human TNF-α in the presence of increasing concentration of test compounds for 24 hours followed by ATP -based viability assessment.
Modification of the tiήazole of Compound (3)
The thiazole of Compound (3) was replaced with a 1 ,3,4-thiadiazole and with the addition of methyl substituents to various positions on the thiazole. As shown in Table 6, the thiadiazole derivatives were inactive. Adding a methyl at the thiazole 4-position increased the activity slightly, but adding this substituent to the 5-ρosition had a negative effect. Table 6
Figure imgf000050_0001
Compounds (16)-(21) compound Xs X2 R EC50(μM)
16 CH N H Inactive
17 CH N 4-F Inactive
18 CH N 3 -F Inactive
19 CH N 2-F Inactive
20 CH CMe 4-F 5.25
21 CMe CH 4-F 23.07
Influence of substituents on the phenyl ring of Compound (3)
For the study of the influence of substituents on the phenyl ring, a series of derivatives of compound (3) were prepared according to Scheme 1. Results of the biological studies arc shown in Table 7. As shown in Table 7, the fluoro group at the para-position could be replaced with a variety of electron- donating or electron- withdrawing substituents with retention of necroptosis inhibitory activity. It is worth noting that replacing the fluoro group by morpholine (29) or phenyl (33) increased necroptosis inhibitory activity. When the fluoro group in the para-position was retained, adding an additional fluoro group to the 3-position of phenyl ring enhanced the activity slightly ((34) vs. (3) and (35) vs. (29)).
Table 7
Figure imgf000051_0001
compound R EC50(μM)
3 4-F 10.6
22 3-F Inactive
23 2-F inactive
24 H 4(16
25 4-CH3O 14.9
26 4-CH3 7.77
27 4-Cl 15 63
28 4-Br 34.51
29 4-N(C2H4)2O 2.93
30 4-NO2 22.96
31 4-SCH3
32 4-OH 32.67
33 4-Ph 1.29
34 3,4-F2 6.32
36 3,4-O2(CH2) 34.83
65 3_F_4_N< C2H4)2O 2.90
Since (29) (EC50 =2.93 μm) with a rnorpholine group at the 4-posiτion of the phenyl ring displayed increased inhibitory activity, several derivatives with substituting grouos containing a N atom at the phenyl para-position were examined (Table 8). These derivatives were also synthesized according to Scheme L The acetophenones for compounds (37)-(39) were prepared by a SN Ar reaction of N-contained heterocycles with 4-fluoroacetophenone in the presence of potassium carbonate while the staring material for (40) and (41) was derived from alkylation of 4-aminoacetophenone by iodomethane or iodoethane. Table 8
Figure imgf000052_0001
Compounds (37)-(43) compound RA RH Z S EC50(UM)
37 -(CH2),- 6.36
38 -(CHz)4- 9.53
39 -(C2H4)2S 3.30
40 Me Me -
41 Et Et -
42 -(C2H4)2O C-O 7.19
Figure imgf000052_0002
As shown in Table 8, heterocyclic groups without an oxygen atom ((37) and (38)) also increased activity, but less so compared to the morpholine ring. A derivative with a 6-membered ring displayed better activity compared to a 5- membered ring ((37) vs. (38)). Thiomorpholine substitution improved activity similar to that of morpholine ((39) vs. (29)). Finally, addition of the N- containing heterocycles to the phenyl ring through an acyl moiety, e.g. piperidine ring, resulted in further improvement in activity ((42) vs. (43)).
Compound (33) (EC50 =1.29μM) with a biphenyl in place of the phenyl ring was also active. Various other replacements were also examined (Table 9). As shown in Table 9, most replacements were well tolerated. However, the disruption of the biphenyl structure had little influence on the activity (52). Thus, the conjugated structure is not important for optimal activity of the biphenyl. Notably, another conjugated bi-cyclic derivative with naphthyl group displayed greatly decreased activity (EC50 =56.8 μM). Table 9
Figure imgf000053_0001
Compounds (44)-{52) compound Z' R EC50(UM)
44 - o-OMe 2.41
45 - p-OMe 2.59
46 - p-Me 4.38
47 - p-Cl >100
48 - p-F 3.87
49 - o-F 47.97
50 -0- -H -
51 -S- -H _
52 -SO2- -H 1.78
Finally, derivatives (53)-(64) were evaluated and the experimental results are shown in Table 10.
Table 10
Figure imgf000053_0002
Compounds (53)-(64j compound R EC50(UM)
53 N NH H Inactive
54 N NH Cl Inactive
55 N NH OCH3 Inactive
56 N NH F Inactive
57 CH O Cl Inactive
58 CH O F Inactive
59 CH O CH3 Inactive
60 CH O NO2 Inactive
61 CH C-Me F Inactive
62 CH C-CH2CONH2 F Inactive compound r R EC50(μM)
63 CH C-Bn F Inactive 64 CH C-Ph F Inactive
In conclusion, a number of derivatives of (3) were found to inhibit TNF- α-induced necroptosis in FADD-deficient variant of human Jurkat T cells.
Example 3: RIPl Kinase Assay
RIPl kinase autophosphorylation reactions were performed in the presence of the indicated concentrations of Nec-1 and compound (3) for 30 min at 30 0C. Reactions were performed as described in Degterev et al., Not. Chem. Biol, 4: 313-321 (2008). Briefly, recombinant human GST-RIPl (1-375 a.a.) was expressed using Baculogold system in Sf9 cells and purified using glutathione-sepharose beads. Protein was eluted in 50 mM Tris-HCl, pH 8.0. Two micrograms of protein were used in each reaction. Reactions were performed in the presence of 20 mM ATP and 3 mCi γ-32P-ATP. Following the reaction, products were separated on 8% SDS-PAGE and visualized by autoradiography. As shown in Figure 1 and in contrast to the results obtained using Nee- \ , Compound (3) does not inhibit recombinant RlPl kinase. These data suggest the possibility that (3) may target an additional regulatory molecule in the pathway.
All publications, patents, and patent applications mentioned in this specification are herein incorporated by reference to the same extent as if each independent publication or patent application was specifically and individually indicated to be incorporated by reference.
While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure that come within known or customary practice within the art to which the invention pertains and may be applied to the essential features hereinbefore set forth, and follows in the scope of the claims.
Other embodiments are within the claims.
What is claimed is:

Claims

1. A compound of the formula
Figure imgf000056_0001
(I), wherein each X1, X2, X , X4, X5, and X6 is selected, independently, from N or
CR xi. each Y1, Y2, and Y3 is selected, independently, from O, S, NRY1, or
CRY2RY?; each Z and Z is selected, independently, from O, S, or NR Zl . each RY1 and RZ1 is selected, independently, from H, optionally substituted C]-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted hctcrocyciyl, optionally substituted aryl, optionally substituted heteroaryl, - ( X=C ))R^. -C(-O)OR5A, or -C(=O)NR5AR64; each R , R , and R is selected, independently, from H, halogen, CN, NC, NO2, N3. OR3, SR3, NR3R4, -C(-Q)R5A, -C(-O)OR5A, -C(=O)NR5AR6A -
Figure imgf000056_0002
optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heierocycly. !, optionally substituted aryl, or optionally substituted heteroaryl; each R1, Rl R5A, R5B, R6A, and R6B is selected from H, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl. optionally substituted aryl, or optionally substituted heteroaryl. or R5A and R6A, or R5B and R6B combine to form a heterocyclyl; and each R3 and R4 is selected from H, optionally substituted C]-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, -C(=O)R5B, -C(=S)R5B, -C(=NR6B)R5B, -C(=O)OR5B, -C(=O)NR5BR6B, -S(=O)R5B, -S(=O)2R5B, - S(=O)2OR5B, or -S(=O)2NR5BR6B; wherein when R1 is H, X1, X2, and X4 are each CH, X3, X5, and X6 are each N, Y1 and Y3 are each S, Y2 is NH, Z1 is NH, and Z2 is O, R2 is not 4- fluorophenyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
2. The compound of claim 1, wherein said compound is of the formula
Figure imgf000057_0001
(II), wherein
X1, X2, X4, X5, R1, Y2, and RZ1 are as defined for Formula (I); each R2A, R2B, R2C, R2D, and R2E is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, CN, NC, NO2, N3, OR7, SR7, S(=O)R12, S(=O)2R12, S(=O)OR12, S(O)2OR12, NR7R8, C(=O)R12, C(O)OR12, C(=O)NR12R13, Q=S)R12, C(=S)OR12, C(^S)NR12R13, C(=NR9)R12, C(-NR9)OR12, or C(=NR9)NR12R13, or R2A and R ; R2B and R2C, R2C and R2D, or R2D and R2E combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl; each R , R , and R is selected, independently, from H, optionally substituted C1 ^ alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heieroaryl, S(=O)R10, S(-O)2R10, CC-O)R10, CC=O)OR10, C(O)NR10R11, C(-S)R10, C(=S)OR10, CC=S)NR10R11, C(=NR14)R10, C(=NR14)OR10, or C(=NRH)NR10Rn, or K7 and Rs combine to form an optionally substituted heterocyclyl; and each R10, R11, R12, Rϋ, and R14 is selected, independently, from H5 optionally substituted C|_ft alkyl. optionally substituted C2.β alkenyl, optionally substituted C2^ alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R10 and R11 or R12 and R13 combine to form an optionally substituted heterocyclyl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
3. The compound of claim 2, wherein said compound of the formula
Figure imgf000058_0001
(II- A), wherein each R1, R2A, R2B, R2C, R21I R2r, RY1, R71, R1, R4, R5\ R6A, R\ R8, R9, and R12 is as defined in Formula (II); and where each RX1A and RX1B is selected, independently, from lϊ, halogen, CN, NC, NO2, N,, OR3. NR3R4, -C(-Q)R5A, -C(=O)OR5A, -C(=O)NR? VA, -SC-O J2R' *, -S(=O);OR5\ -S(=ObNRiAR"Λ, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof,
4. The compound of claim 3, wherein Rv ι is II, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
5. The compound of claim 3, wherein RZi is H, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
6. The compound of claim 3, wherein RX1A is H and RX1B is H or optionally substituted C1-6 alkyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
7. The compound of claim 6, wherein RX1A and RX1B are H, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
8. The compound of claim 3, wherein R1 is H, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
9. The compound of claim 3, wherein R2A, R2D, and RJE are H, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
or"" *7
10. The compound of claim 3, wherein R is selected from halogen, OR ,
SR7, S(=O)2R12, NR7R8, CC-O)R12, C(KJ)OR12, C(=O)NR12R13, optionally substituted C1 -6 alkyl, optionally substituted heterocyclyl, or optionally substituted aryl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
OC
1 1. The compound of claim 10, wherein R is halogen. or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
12. The compound of claim 11, wherein R2B is also halogen, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
13. The compound of claim 3, wherein said compound is of the formula
Figure imgf000060_0001
, wherein
RX1B is H or optionally substituted C1^ alkyl; each R2A, R2B, R2C, R2D, and R2E is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, OR7, S(=O)R12, S(=O)2R12, NR7R8, C(=O)R12. C(=O)OR12, or C(-O)NR12R13, or R2A and R2B, R2B and R2C, R2C and R2D, or R2D and R2E combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl; each R7 and Rs is selected, independently, from H. optionally substituted C]-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, S(=O)R10, S(=O)2R10, C(O)R10, C(-O)OR10, C(O)NR10R11, or R7 and R8 combine to form an optionally substituted heterocyclyl; and each R10, R11, R12, and R13 is selected, independently, from H, optionally substituted C1-6 alkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl, or R10 and Rn or R12 and R13 combine to form an optionally substituted heterocyclyl; or any pharmaceutical!} acceptable salt or solvate thereof, or stereoisomer thereof. YI Pl
14. The compound of claim 13, wherein R is H, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
Yl Tl
15. The compound of claim 13, wherein R is C1-6 alkyl, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
16. The compound of claim 15, wherein said compound is
Figure imgf000061_0001
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
17. The compound of claim 13, wherein R2A, R2D, and R2E are H, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
18. The compound of claim 13, wherein R is halogen, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
19. The compound of claim 18, wherein said compound is
Figure imgf000061_0002
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
20. The compound of claim 17 or 18, wherein R2B is halogen, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
21. The compound of claim 20, wherein said compound is
Figure imgf000062_0001
(65), or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
22. The compound of claim 13, wherein R2C is optionally substituted C]-6 alkyl or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
23. The compound of claim 22, wherein said compound is
Figure imgf000062_0002
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
24. The compound of claim 13, wherein R is optionally substituted heterocyclyl, NR7R8, or C(-O)NR!-R13, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
25. The compound of claim 24, wherein R2C is NR7R8, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
26. The compound of claim 25, wherein R and R are each C1-6 alky 1, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
27. The compound of claim 24, wherein said compound is of the formula
Figure imgf000063_0001
wherein each n and m is, independently, an integer between 0-4; G is a bond, O, S, or NR2J; R is H or optionally substituted C1-6 alkyl; and wherein (n+m) is at least 2, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
28. The compound of claim 27, wherein said compound is selected from the group consisting of:
Figure imgf000063_0002
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
29. The compound of claim 24, wherein said compound is of the formula
Figure imgf000064_0001
n each n and m is, independently, an integer between 0-4; G is a bond, O, S, or NR2J; R2J is H or optionally substituted C1-6 alkyl; and wherein (n+m) is at least 2, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
30. The compound of claim 29, wherein said compound is
Figure imgf000064_0002
H (42). or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof,
31. The compound of claim 13, wherein said compound is of the formula
Figure imgf000065_0001
wherein
G1 is a covalent bond or S(^O)2; each R2K, R2L, R2M, R2N, and R20 is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, optionally substituted C2-6 alkenyl, optionally substituted C2^6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, CN, NC, NO2, N3, OR2P, SR2P, S(=O)R2P, S(-O)2R2P, S(-O)OR2P, S(-O)2OR2P, NR2QR2R, C(=O)R2P, C(=O)OR2P, C(-O)NR2QR2R, C(=S)R2P, C(=S)OR2P, C(=S)NR2QR2R, C(=NR2S)R2Q, C(-NR2S)OR2Q, or C(-NR2S)NR2QR2R, or R2K and R2L, R2L and R2M, R2M and R2N, R2N and R20, or R2Q and R2R combine to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl; and each R2P 5 R2Q, R2R, and R2S is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, optionally substituted C2,g alkenyl, optionally substituted C2-6 alkynyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl; or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
32. The compound of claim 31, wherein G1 is S(=O)2, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
33. The compound of claim 32, wherein said compound is
Figure imgf000066_0001
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
34. The compound of claim 31, wherein G1 is a bond, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
35. The compound of claim 34, wherein each R2K R1, R2M, R2N, and R20 is selected, independently, from H, halogen, optionally substituted C1-6 alkyl, and O-(optionally substituted C1-6 alkyl), or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
36. The compound of claim 35, wherein R2K and R2L are H, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
37. The compound of claim 35, wherein at least one of R2M, R2N, and R20 is 0-(optionally substituted Ci-6 alkyl), or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
38. The compound of claim 37, wherein said compound is
Figure imgf000067_0001
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
39. The compound of claim 35, wherein at least one of R2M, R2N, and R20 is optionally substituted C1^6 alkyl or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
40. The compound of claim 39, wherein said compound is
Figure imgf000067_0002
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
41. The compound of claim 35, wherein at least one of R2M, R2N, and R20 is halogen, or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
42. The compound of claim 41, wherein said compound is
Figure imgf000068_0001
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
43. The compound of claim 35, wherein said compound is
Figure imgf000068_0002
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
44. A pharmaceutical composition comprising a pharmaceutically acceptable excipient and the compound of any of claims 1-43, or a compound having the following structure
Figure imgf000068_0003
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
45. A method of treating a condition in a subject, said method comprising the step of administering the compound of any of claims 1 -43, or a compound having the following structure
Figure imgf000069_0001
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof, to said subject in a dosage sufficient to decrease necroptosis.
46. The method of claim 45, wherein said condition is a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, the result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, myocardial infarction, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft-versus-host disease, viral infection, Crohn's disease, ulcerative colitis, asthma, or any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor.
47. The method of claim 46, wherein said condition is a neurodegenerative disease of the central or peripheral nervous system.
48. The method of claim 46, wherein said condition is hepatic or brain ischemic injury, or ischemic injury during organ storage, head trauma, septic shock, or coronary heart disease.
49. The method of claim 46, wherein said condition is stroke.
50. The method of claim 46, wherein said condition is myocardial infarction.
51. A method of decreasing necroptosis comprising contacting a cell with the compound of any of claims 1-43, or a compound having the following structure
Figure imgf000070_0001
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof.
52. A kit comprising
(a) a pharmaceutically acceptable composition comprising the compound of any of claims 1 -43 or a compound having the following structure
Figure imgf000070_0002
or any pharmaceutically acceptable salt or solvate thereof, or stereoisomer thereof; and
(b) instructions for the use of the pharmaceutical composition of (a) to treat a condition in a subject.
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