WO2009018415A1 - Process for preparing 5-fluoro-1h-pyrazolo [3, 4-b] pyridin-3-amine and derivatives thereof - Google Patents

Process for preparing 5-fluoro-1h-pyrazolo [3, 4-b] pyridin-3-amine and derivatives thereof Download PDF

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Publication number
WO2009018415A1
WO2009018415A1 PCT/US2008/071714 US2008071714W WO2009018415A1 WO 2009018415 A1 WO2009018415 A1 WO 2009018415A1 US 2008071714 W US2008071714 W US 2008071714W WO 2009018415 A1 WO2009018415 A1 WO 2009018415A1
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Prior art keywords
ring
aliphatic
compound
optionally substituted
halo
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PCT/US2008/071714
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French (fr)
Inventor
Juan-Miguel Jimenez
Philip Collier
Andrew Miller
Jeremy Green
Huai Gao
Sylvain Loïc Jean-Luc HAMON
Albert Cornelis Dros
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Vertex Pharmaceuticals Incorporated
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Priority to JP2010520181A priority Critical patent/JP5553751B2/en
Priority to AU2008282156A priority patent/AU2008282156B2/en
Priority to EP08796922A priority patent/EP2176261B1/en
Priority to ES08796922T priority patent/ES2400104T3/en
Priority to NZ582879A priority patent/NZ582879A/en
Priority to CN2008801048142A priority patent/CN101790532B/en
Application filed by Vertex Pharmaceuticals Incorporated filed Critical Vertex Pharmaceuticals Incorporated
Priority to CA2694499A priority patent/CA2694499A1/en
Priority to MX2010001137A priority patent/MX2010001137A/en
Publication of WO2009018415A1 publication Critical patent/WO2009018415A1/en
Priority to US12/695,292 priority patent/US8242272B2/en
Priority to HK10108334.6A priority patent/HK1141806A1/en
Priority to US13/347,926 priority patent/US8598361B2/en

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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07D—HETEROCYCLIC COMPOUNDS
    • C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04—Ortho-condensed systems
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P25/00—Drugs for disorders of the nervous system
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P29/00—Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00—Antineoplastic agents
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00—Drugs for immunological or allergic disorders
    • A61P37/02—Immunomodulators
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00—Drugs for immunological or allergic disorders
    • A61P37/02—Immunomodulators
    • A61P37/06—Immunosuppressants, e.g. drugs for graft rejection
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00

Definitions

  • the present invention relates to a process for the synthesis of 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine in high yield and purity.
  • the present invention also relates to a process for the synthesis of 5-fluoro-lH-pyrazolo [3, 4-b] pyridin- 3-amine derivatives.
  • the process is useful for preparing biologically active compounds, particularly certain GSK-3 inhibitors, or derivatives thereof.
  • the present invention provides a process for preparing a compound of formula 5:
  • the present invention also provides a process for making a compound of formula I :
  • These compounds of formula I are particularly useful as GSK-3 inhibitors. These compounds and pharmaceutically acceptable compositions thereof are also useful for treating or preventing a variety of diseases, disorders or conditions, including, but not limited to, an autoimmune, inflammatory, proliferative, or hyperproliferative disease, a neurodegenerative disease, or an immunologically-mediated disease .
  • One aspect of the invention provides a process for preparing a compound of formula 5:
  • Another embodiment further comprises the step of treating the compound of formula 2 with suitable amide formation conditions to form a compound of formula 3: 3
  • Another embodiment further comprises the step of reducing the compound of formula 3 under suitable reduction conditions to form a compound of formula 4 :
  • Yet another embodiment further comprises the step of cyclizing a compound of formula 4 with H2NNH2.H2O under suitable cyclization conditions to form the compound of formula 5.
  • the de-chlorination conditions comprise adding a palladium catalyst (such as Pd (OAc) 2), PPh3, a suitable base (such as Et3N) , and a suitable acid (such as formic acid HCOOH) .
  • a palladium catalyst such as Pd (OAc) 2
  • PPh3 a suitable base
  • Et3N a suitable acid
  • this reaction is done in DMF under N2 atmosphere.
  • the reaction can be monitored by analysis of aliquots taken from the reaction mixture, such as with 1 HNMR analysis.
  • more catalyst and HCOOH/Et 3 N can be added and the reaction can be stirred for longer.
  • the reaction is done at a temperature below 60° C. In some embodiments, at 50° C.
  • the reaction mixture upon completion, is cooled to about 0° C, to which water is added. In some embodiments, the reaction mixture is then filtered through celite. The reaction mixture is basified to pH 9 (using a base such as 30% aq NaOH) and is subsequently washed with an organic solvent (such as EtOAc) . The mixture is then acidified to pH 1
  • the organic phase is concentrated under reduced pressure to give 88% yield of a beige solid which can be used in the next step without further purification .
  • Suitable amide formation conditions from a carboxylic acid are known to those skilled in the art.
  • the amide formation condition comprises a two-step process. In the first step, an acid chloride is generated (formula 2-1) . In the second step, ammonia (NH 3 ) is added. 2-1
  • Acid chlorides can be formed from carboxylic acids via a variety of reagents that are known to one of skill in the art.
  • reagents include, but are not limited to, oxalyl chloride and thionyl chloride.
  • chlorination reactions are done in the presence of DMF and DCM.
  • a solution of the carboxylic acid is cooled in a solution of DMF and DCM to about 0 0 C before the chlorinating reagent is added.
  • the resultant reaction mixture is stirred at room temperature until the reaction has gone to completion.
  • the resultant reaction mixture is concentrated in vacuo to form the acid chloride.
  • Suitable reduction conditions are known to one of skill in the art.
  • the reduction conditions comprise adding TFAA dropwise to a cooled (e.g., 0° C) suspension of the 2-chloro-5-fluoronicotinamide, Et 3 N and DCM.
  • the reaction mixture is stirred for about 90 minutes at 0° C.
  • the reaction mixture is diluted with a suitable solvent (e.g., DCM), washed with sat. aq. NaHCO 3 and brine, and dried with a suitable drying agent (e.g., Na2SO 4 , MgSO 4 ).
  • the organic layer is filtered and concentrated to provide the desired compound.
  • the desired compound is purified via column chromatography.
  • Suitable cyclization conditions are known to one of skill in the art.
  • 2-Chloro-5-fluoronicotinonitrile is refluxed with hydrazine monohydrate in butanol.
  • said reaction is refluxed for about 4 hours.
  • the mixture is then cooled to room temperature and concentrated.
  • the precipitate can then be successively washed on filter with water, Et 2 O, and dried in vacuo overnight to provide the desired compound.
  • the compound of formula 5 may be used to prepare compounds of formula I as described herein.
  • Another embodiment provides a process for preparing a compound of formula I :
  • Z 2 is N or CR Z ;
  • R x is T ⁇ R 3 ;
  • R ⁇ is T 2 -R 10 ;
  • R x and R ⁇ are taken together with their intervening atoms to form a fused aromatic or non-aromatic 5-8 membered ring having 0-3 ring heteroatoms selected from oxygen, sulfur, or nitrogen, wherein any substitutable carbon on said fused ring formed by R x and R ⁇ is substituted by T-R , and any substitutable nitrogen on said ring formed by R x and R ⁇ is substituted by R 4 ;
  • R z is H, halo, or Ci-6 aliphatic, wherein the aliphatic is optionally substituted with 1-5 groups selected from halo, -CN, and -OR; each T and T 1 is independently a bond or a C1-4 alkylidene chain;
  • Ring D is a 4-7 membered monocyclic ring or 8-10 membered bicyclic ring selected from a heterocyclyl, aryl, heteroaryl, or carbocyclyl ring; said heterocyclyl or heteroaryl ring having 1-4 ring heteroatoms selected from nitrogen, oxygen or sulfur, wherein each substitutable ring carbon of Ring D is independently substituted with oxo, R 1 , or -R 5 and any substitutable ring nitrogen is independently substituted with -R 4 ;
  • R 1 is selected from -halo, -CN, -NO 2 , T-V-R 6 , phenyl, 5-6 membered heteroaryl ring, 5-6 membered heterocyclyl ring, or Ci-6 aliphatic group, said phenyl, heteroaryl, and heterocyclyl rings each optionally substituted by up to three groups independently selected from halo, oxo, or -R 8 , said Ci- 6 aliphatic group optionally substituted with halo, cyano, nitro, or oxygen, or R 1 and an adjacent substituent taken together with their intervening atoms form said ring fused to Ring D;
  • V is -0-, -S-, -SO-, -SO 2 -, -N(R 6 ) SO 2 -, -SO 2 N(R 6 )-, -N(R 6 )-, -CO-, -CO 2 -, -N (R 6 ) CO-, -N (R 6 ) C (O)O-, -N (R 6 ) CON (R 6 ) -, -N(R 6 ) SO 2 N(R 6 ) -, -N(R 6 )N(R 6 ) -, -C(O)N(R 6 )-, -OC(O)N(R 6 )-, -C(R 6 ) 2 O-, -C(R 6 ) 2 S-, -C(R 6 ) 2 SO-, -C(R 6 ) 2 SO 2 -, -C (R 6 ) 2 SO 2 N (R 6 ) -, -C (R 6
  • said Ring D has one or two ortho substituents independently selected from -R 1 , any substitutable non-ortho carbon position on Ring D is independently substituted by -R 5 .
  • Another embodiment provides a process for preparing a compound of formula I :
  • Z 2 is N or CR Z ;
  • R x is T ⁇ R 3 ;
  • R ⁇ is T 2 -R 10 ;
  • R x and R ⁇ are taken together with their intervening atoms to form a fused aromatic or non-aromatic 5-8 membered ring having 0-3 ring heteroatoms selected from oxygen, sulfur, or nitrogen, wherein any substitutable carbon on said fused ring formed by R x and R ⁇ is substituted by T-R 3 , and any substitutable nitrogen on said ring formed by R x and R ⁇ is substituted by R 4 ;
  • R z is H, halo, or Ci-6 aliphatic, wherein the aliphatic is optionally substituted with 1-5 groups selected from halo, -CN, and -OR; each T and T 1 is independently a bond or a Ci_ 4 alkylidene chain;
  • the compound of formula 5 is synthesized according to the methods described herein.
  • LG is selected from halogen groups (such as F, Cl, Br, or I); electronegative sulfonyl groups (such as arylsulfonyloxy, alkylsulfonyloxy, trifluoromethane- sulfonyloxy, alkylsulfonyl (such as methylsulfonyl) , and alkylsulfoxide (such as methyl sulfoxide) .
  • LG is halogen.
  • LG is chloro.
  • Z 2 is N.
  • CR Z the process is used to prepare a compound of one of the following formulae:
  • Ring D is a 5-10 membered cycloaliphatic or a 5-10 membered heterocyclyl where said heterocyclyl contains 1-2 heteroatoms selected from O, N, or S; wherein the cycloaliphatic or heterocyclyl is optionally substituted with 1-5 -R 5 . In some embodiments, 1-2 -R 5 . In some embodiments, Ring D is bonded to the pyrimidine via a carbon atom. In some embodiments, said cycloaliphatic or heterocyclyl is optionally substituted with 1-2 -R 5 wherein -R 5 is halo or Ci- 4 alkyl. In some embodiments, -R 5 is fluoro or methyl. [0029] In some embodiments, Ring D is a 4-7 membered monocyclic cycloaliphatic or heterocyclyl ring or an 8-10 membered bicyclic cycloaliphatic or heterocyclyl ring.
  • Ring D is a 5-7 membered cycloaliphatic. In some embodiments, Ring D is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, or adamantyl . In other embodiments, Ring D is a 5-7 membered heterocyclyl containing 1 heteroatom. In yet other embodiments, Ring D is a 6-membered heterocyclyl containing one oxygen atom. In some embodiments, Ring D contains at least one nitrogen atom.
  • Ring D is an optionally substituted ring selected from piperidinyl, piperazinyl, pyrrolidinyl, morpholinyl, 1, 2, 3, 4-tetrahydroisoquinolinyl, 1,2,3,4- tetrahydroquinolinyl, 2, 3-dihydro-lH-isoindolyl, 2, 3-dihydro-lH- indolyl, or isoquinolinyl .
  • Ring D is optionally substituted tetrahydronaphthyl, benzodioxinyl, indanyl, indolinyl, or isoquinolinyl.
  • Ring D is tetrahydro-2H-pyran .
  • Ring D is a 5-7 membered monocyclic aryl or heteroaryl ring, said heteroaryl ring having 1-4 ring heteroatoms selected from nitrogen, oxygen or sulfur.
  • Ring D is an optionally substituted ring selected from phenyl, pyridinyl, quinolinyl, or naphthyl .
  • Ring D is phenyl, pyridinyl, pyrimidinyl, pyridazinyl, pyrazinyl, or 1, 2, 4-triazinyl ring.
  • Ring D is phenyl or pyridinyl.
  • Ring D is phenyl, imidazolyl, pyrazolyl, pyridyl, pyridazinyl, pyrazinyl, naphthyl, benzimidazolyl, benzthiazolyl, quinolinyl, quinazolinyl, isobenzofuran, indolyl, or indazolyl. [0032] In some embodiments, Ring D is optionally substituted. In some embodiments, Ring D is phenyl, wherein the phenyl is optionally substituted with 1-5 -R 5 .
  • Ring D has one or two ortho substituents independently selected from -R 1 ; and any substitutable non-ortho carbon position on Ring D is independently substituted with -R 5 .
  • two adjacent substituents on Ring D are optionally taken together with their intervening atoms to form a fused, unsaturated or partially unsaturated, 5-6 membered ring having 0-3 heteroatoms selected from oxygen, sulfur or nitrogen, wherein said fused ring is optionally substituted with halo, oxo, or -R 8 .
  • R 1 is selected from -halo, -CN, -NO2, T-V-R , phenyl, 5-6 membered heteroaryl ring, 5-6 membered heterocyclyl ring, or a Ci-6 aliphatic group; wherein said phenyl, heteroaryl, and heterocyclyl ring is each optionally substituted with up to three groups independently selected from halo, oxo, or -R ; wherein said Ci-6 aliphatic group is optionally substituted with halo, cyano, nitro, OH, or oxo.
  • R 1 and an adjacent substituent taken together with their intervening atoms form said ring fused to Ring D.
  • R 1 is -halo, an optionally substituted Ci-6 aliphatic group, phenyl, -COR 6 , -OR 6 , -CN, -SO 2 R 6 , -SO 2 NH 2 , -N (R 6 ) 2 , -CO 2 R 6 , -CONH 2 , -NHCOR 6 , -OC(O)NH 2 , or -NHSO 2 R 6 .
  • R 1 is -halo, a Ci-6 haloaliphatic group, an optionally substituted Ci-6 aliphatic group, phenyl, or -CN.
  • R 1 is -halo, -CN, or a Ci-4 aliphatic group optionally substituted with halogen.
  • R 1 is -halo; in some embodiments, chloro.
  • R 1 is chloro or CF 3 .
  • R 1 is -halo, a Ci-6 haloaliphatic group, an optionally substituted Ci-6 aliphatic group, phenyl, or -CN and R ⁇ is azetidine.
  • said Ci-6 aliphatic group is optionally substituted with halo.
  • Ring D is a 3-8 membered cycloalkyl optionally substituted with 1-2 halo.
  • said halo is chloro or fluoro.
  • each R 6 is independently selected from hydrogen or Ci_ 4 aliphatic group optionally substituted with 0-3 J 6 ; or two R 6 groups on the same nitrogen atom are taken together with the nitrogen atom to form a 5-6 membered heterocyclyl or heteroaryl ring, wherein said heterocyclyl or heteroaryl ring is optionally substituted with 0-4 J 6 .
  • each R 8 is independently selected from -OR 6 , -SR 6 , -COR 6 , -SO 2 R 6 , -N(R 6 ) 2 , -N (R 6 ) N (R 6 ) 2 , -CN, -NO 2 , -CON (R 6 ) 2, -CO 2 R 6 , or a Ci_ 4 aliphatic group, wherein said Ci_ 4 aliphatic group is optionally substituted with 0-3 J 8 .
  • R x is H or Ci-6 aliphatic, wherein the aliphatic is optionally substituted with 1-5 halo.
  • R x is H or Ci_ 4 alkyl.
  • the alkyl is methyl, ethyl, cyclopropyl, or isopropyl.
  • the halo is fluoro.
  • R x is hydrogen, Ci-4aliphatic, or halo.
  • R x is hydrogen, fluoro, methyl, or ethyl. In other embodiments, R x is hydrogen .
  • R ⁇ is ⁇ 2 -R 10 wherein T 2 is a bond.
  • R ⁇ is piperidinyl, piperazinyl, pyrrolidinyl, or morpholinyl.
  • R ⁇ is Ci_ 4 alkyl optionally substituted with 0-2 R 9 .
  • R 9 is OH or F.
  • R ⁇ is CH 3 , CF 3 , Cl, or C(CH 3 ) 2 OH.
  • R ⁇ is halo; in some embodiments, chloro.
  • R x and R ⁇ are both d- 4 alkyl.
  • R x and R ⁇ are methyl.
  • R x is hydrogen and R ⁇ is not hydrogen.
  • R x is hydrogen and R ⁇ is ⁇ 2 -R 10 wherein T 2 is a bond, wherein R 10 is not hydrogen.
  • R x is hydrogen and R ⁇ is CH 3 , CF 3 , Cl, or C(CH 3 ) 2 OH.
  • R ⁇ is represented by formula ii-a:
  • T 2 is a bond.
  • R 9 is -R 7 , -COR 7 , -CO 2 R", -CON (R 7 ) 2 , or -SO 2 R 7 .
  • R z is H or Ci_ 4 alkyl. In another embodiment, R z is H or methyl. In some embodiments, R 10 is an optionally substituted azetidine. In another embodiment, R ⁇ is represented by formula i: i . 2. In yet another embodiment, R ⁇ is represented by formula iii: iii .
  • R ⁇ is azetidine and Ring D is an optionally substituted ring selected from phenyl, pyridinyl, pyrimidinyl, pyridazinyl, pyrazinyl, 1, 2, 4-triazinyl, imidazolyl, pyrazolyl, benzimidazolyl, benzthiazolyl, quinazolinyl, isobenzofuran, indolyl, indazolyl, quinolinyl, or naphthyl .
  • Another embodiment provides a process for preparing a compound of formula I wherein R x is hydrogen or Ci- 4 aliphatic;
  • R ⁇ is I—' ( J )o-6 ; Ci- 4 alkyl optionally substituted with 0-2 J; or a 6 membered heterocyclyl containing 1-2 heteroatoms selected from O, N, or S;
  • J is halo, OH, or Ci- 4 ali ⁇ hatic
  • Ring D is phenyl, C 3 - 10 cycloalkyl, or 5-7 membered heterocyclyl containing 1-2 heteroatoms selected from O, N, or S;
  • R 1 is Ci_ 4 alkyl, CF 3 , or halo
  • R 5 is H; wherein the remaining variables are as defined herein.
  • Another embodiment provides a process for preparing a compound of formula I wherein
  • R x is hydrogen, methyl, or ethyl; R is methyl, CF 3 , Cl, morpholinyl, or C(CH 3 ) 2 OH; Ring D is phenyl, tetrahydro-2H-pyran, adamantyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl; R 1 is methyl, CF 3 , or halo; R 5 is H; wherein the remaining variables are as defined herein. [0050] Another embodiment provides a process for preparing a compound of formula I wherein R x is hydrogen or methyl; R ⁇ is methyl;
  • Ring D is phenyl or cyclohexyl; R 1 is methyl, CF 3 , or Cl; R 5 is H; wherein the remaining variables are as defined herein.
  • Reagents and conditions (i) HCl, Et 2 O/MeOH, (ii) NH 3 , EtOH; (iii) Et 3 N, EtOH , reflux; (iv) POCl 3 , reflux; (v) 5-fluoro-lH- pyrazolo [3, 4-b] pyridin-3-amine, DIPEA, NaI, DMF, 120 0 C.
  • Scheme I above shows a general synthetic route that is used for preparing the compounds 1-5.
  • Compounds of formula 1-5 can be prepared from intermediate I-l.
  • the formation of amidine 1-2 is achieved by treating nitrile derivative I-l with HCl in the presence of methanol and then treating the intermediate imidate with NH 3 in ethanol.
  • Intermediate 1-2 is then treated with the corresponding beta-ketoester via reflux in EtOH.
  • the corresponding hydroxypyrimidine intermediate is treated with POCl 3 to yield chloroderivative 1-4.
  • This reaction is amenable to a variety of amidines (1-3) .
  • the chloropyrimidine 1-4 is treated with 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine in the presence of DIPEA and NaI to yield the final compound 1-5.
  • Scheme II shows a general synthetic route that is used for preparing the compounds 1-5.
  • Scheme II shows a general synthetic route that is used for preparing the compounds 1-5.
  • Reagents and conditions (i) EtONa, EtOH, reflux; (ii) POCl 3 , reflux; (iii) 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine, NaI, DMF, 110 0 C, (iv) R ⁇ [wherein R ⁇ is bonded via N-atom] n-butanol, 108 0 C.
  • Scheme II above shows a general synthetic route that is used for preparing the compounds II-5 wherein R ⁇ is bonded to the pyrimidine via a nitrogen atom.
  • Compounds of formula II-5 can be prepared from intermediate II-3.
  • the formation of intermediate II-3 is achieved by reacting diethyl malonate (II- 1) with the corresponding amidine (II-2) in the presence of EtONa as a base in refluxing ethanol.
  • the crude is then treated with POCI3 to yield dichloropyrimidine intermediate II-3.
  • the dichloropyrimidine intermediate is sequentially treated with IH- pyrazolo [ 3, 4-b] pyridin-3-amine and R ⁇ amine derivatives to yield final compounds II-5.
  • These two reactions sequence are amenable to a variety of amines (R ⁇ ) , such as heterocyclic and alkyl amines .
  • Reagents and conditions (i) mCPBA, EtOAc; (ii) POCl 3 ; (iii) PdPPh 3 ) 2 C1 2 , Ba(OH) 2 , DME-H 2 O, 110 0 C; (iv) 5-fluoro-lH- pyrazolo [3, 4-b] pyridin-3-amine, Pd(OAc) 2 , Xantphos, K 2 CO 3 , dioxane, 120 0 C.
  • Scheme III above shows a general synthetic route that is used for preparing the compounds III-5.
  • Compounds of formula III-5 can be prepared from intermediate III-l.
  • the formation of chloropyridine derivative III-2 is achieved by treating the corresponding pyridine III-l with m-CPBA in EtOAc followed by conversion of the corresponding N-oxide to the chloropyridine by treating it with POCl 3 .
  • Intermediate III-2 is then reacted with the corresponding boronic acid derivative to yield compound III- 3 using Suzuki coupling conditions well known for those skilled in the art. This reaction is amenable to a variety of boronic acid derivatives.
  • the pyridine III-3 is then converted in a chloropyridine derivative III-4 using the same two step procedures as used in step 1, m-CPBA oxidation followed by POCl 3 treatment.
  • Intermediate III-4 is then treated with 5-fluoro-lH- pyrazolo [3, 4-b] pyridin-3-amine in the presence of Pd as a catalyst to yield the final compound III-5.
  • Reagents and conditions (i) Meldrum' s acid, DMAP, CDI, CH 2 Cl 2 0 0 C to r.t., and then EtOH, reflux; (ii) Et 3 N, EtOH , reflux; (iii) POCI 3 , reflux; (iv) 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine, DIPEA, NaI, DMF, 120 0 C; (v) TFA, DCM.
  • Scheme IV above shows a general synthetic route that is used for preparing the compounds of formula IV-5.
  • Compounds of formula 5 can be prepared from intermediate IV-I.
  • the formation of derivative IV-2 is achieved by treating intermediate IV-I with Meldrum' s acid in the presence of CDI, after coupling and decarboxylation the resulting acid is esterified by treating the crude mixture with refluxing ethanol.
  • Intermediate IV-2 is then treated with amidine under reflux in EtOH and the corresponding hydroxypyrimidine intermediate is treated with POCI3 to yield intermediate IV-4. This reaction is amenable to a variety of amidines IV-3.
  • a specified number range of atoms includes any integer therein.
  • a group having from 1-4 atoms could have 1, 2, 3, or 4 atoms.
  • compounds of the invention may optionally be substituted with one or more substituents, such as are illustrated generally above, or as exemplified by particular classes, subclasses, and species of the invention. It will be appreciated that the phrase “optionally substituted” is used interchangeably with the phrase “substituted or unsubstituted. " In general, the term “substituted”, whether preceded by the term “optionally” or not, refers to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent.
  • an optionally substituted group may have a substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position.
  • Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds.
  • stable refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, recovery, purification, and use for one or more of the purposes disclosed herein.
  • a stable compound or chemically feasible compound is one that is not substantially altered when kept at a temperature of 4O 0 C or less, in the absence of moisture or other chemically reactive conditions, for at least a week.
  • aliphatic or "aliphatic group”, as used herein, means a straight-chain (i.e., unbranched) or cyclic, branched or unbranched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation that has a single point of attachment to the rest of the molecule.
  • aliphatic groups contain 1-20 aliphatic carbon atoms. In some embodiments, aliphatic groups contain 1-10 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-8 aliphatic carbon atoms.
  • aliphatic groups contain 1-6 aliphatic carbon atoms, and in yet other embodiments aliphatic groups contain 1-4 aliphatic carbon atoms.
  • Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, or alkynyl groups. Specific examples include, but are not limited to, methyl, ethyl, isopropyl, n-propyl, sec-butyl, vinyl, n-butenyl, ethynyl, and tert-butyl.
  • cycloaliphatic refers to a monocyclic C3-C8 hydrocarbon or bicyclic C8-C12 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule wherein any individual ring in said bicyclic ring system has 3-7 members.
  • Suitable cycloaliphatic groups include, but are not limited to, cycloalkyl and cycloalkenyl groups.
  • cyclopropyl examples include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclopropenyl, and bridged systems, such as bicyclodecane or bicycloheptane .
  • heterocycle means non-aromatic, monocyclic, bicyclic, or tricyclic ring systems in which one or more ring members are an independently selected heteroatom.
  • the "heterocycle”, “heterocyclyl”, or “heterocyclic” group has three to fourteen ring members in which one or more ring members is a heteroatom independently selected from oxygen, sulfur, nitrogen, or phosphorus, and each ring in the system contains 3 to 7 ring members .
  • Suitable heterocycles include, but are not limited to, 3- lH-benzimidazol-2-one, 3- (1-alkyl) -benzimidazol-2-one, 2- tetrahydrofuranyl, 3-tetrahydrofuranyl, 2-tetrahydrothiophenyl, 3-tetrahydrothiophenyl, 2-morpholino, 3-morpholino, 4- morpholino, 2-thiomorpholino, 3-thiomorpholino, 4- thiomorpholino, 1-pyrrolidinyl, 2-pyrrolidinyl, 3-pyrrolidinyl, 1-tetrahydropiperazinyl, 2-tetrahydropiperazinyl, 3- tetrahydropiperazinyl, 1-piperidinyl, 2-piperidinyl, 3- piperidinyl, 1-pyrazolinyl, 3-pyrazolinyl, 4-pyrazolinyl, 5- pyrazolinyl, 1-piperidinyl, 2-
  • Cyclic groups can be linearly fused, bridged, or spirocyclic.
  • heteroatom means one or more of oxygen, sulfur, nitrogen, or phosphorus, (including, any oxidized form of nitrogen, sulfur, or phosphorus; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3, 4-dihydro-2H-pyrrolyl) , NH (as in pyrrolidinyl) or NR + (as in N-substituted pyrrolidinyl) ) .
  • unsaturated as used herein, means that a moiety has one or more units of unsaturation .
  • alkoxy refers to an alkyl group, as previously defined, attached to the principal carbon chain through an oxygen (“alkoxy”) or sulfur rthioalkyl”) atom.
  • haloalkyl mean alkyl, alkenyl or alkoxy, as the case may be, substituted with one or more halogen atoms.
  • halogen means F, Cl, Br, or I.
  • aryl used alone or as part of a larger moiety as in “aralkyl”, “aralkoxy”, or “aryloxyalkyl”, refers to monocyclic, bicyclic, and tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members.
  • aryl may be used interchangeably with the term “aryl ring”.
  • aryl also refers to heteroaryl ring systems as defined hereinbelow.
  • heteroaryl used alone or as part of a larger moiety as in “heteroaralkyl” or “heteroarylalkoxy”, refers to monocyclic, bicyclic, or tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic, at least one ring in the system contains one or more heteroatoms, and wherein each ring in the system contains 3 to 7 ring members.
  • heteroaryl may be used interchangeably with the term “heteroaryl ring” or the term “heteroaromatic” .
  • Suitable heteroaryl rings include, but are not limited to, 2-furanyl, 3-furanyl, N-imidazolyl, 2- imidazolyl, 4-imidazolyl, 5-imidazolyl, benzimidazolyl, 3- isoxazolyl, 4-isoxazolyl, 5-isoxazolyl, 2-oxazolyl, 4-oxazolyl, 5-oxazolyl, N-pyrrolyl, 2-pyrrolyl, 3-pyrrolyl, 2-pyridyl, 3- pyridyl, 4-pyridyl, 2-pyrimidinyl, 4-pyrimidinyl, 5-pyrimidinyl, pyridazinyl (e.g., 3-pyridazinyl) , 2-thiazolyl, 4-thiazolyl, 5- thiazolyl, tetrazolyl (e.g., 5-tetrazolyl) , triazolyl (e.g., 2- triazolyl and 5-triazo
  • a protecting group and “protective group” as used herein, are interchangeable and refer to an agent used to temporarily block one or more desired reactive sites in a multifunctional compound.
  • a protecting group has one or more, or preferably all, of the following characteristics: a) is added selectively to a functional group in good yield to give a protected substrate that is b) stable to reactions occurring at one or more of the other reactive sites; and c) is selectively removable in good yield by reagents that do not attack the regenerated, deprotected functional group.
  • Exemplary protecting groups are detailed in Greene, T. W., Wuts, P.
  • nitrogen protecting group refers to an agents used to temporarily block one or more desired nitrogen reactive sites in a multifunctional compound. Preferred nitrogen protecting groups also possess the characteristics exemplified above, and certain exemplary nitrogen protecting groups are also detailed in Chapter 7 in Greene, T. W., Wuts, P. G in "Protective Groups in Organic Synthesis", Third Edition, John Wiley & Sons, New York: 1999, the entire contents of which are hereby incorporated by reference .
  • one or more methylene units of an alkyl or aliphatic chain can be optionally replaced with another atom or group of atoms.
  • the optional replacements form a chemically stable compound.
  • Optional replacements can occur both within the chain and at either end of the chain; i.e. both at the point of attachment and/or also at the terminal end.
  • Two optional replacements can also be adjacent to each other within a chain so long as it results in a chemically stable compound.
  • the optional replacements can also completely replace all of the carbon atoms in a chain.
  • a C3 aliphatic can be optionally replaced by -NR-, -C(O)-, and -NR- to form -NRC(O)NR- (a urea).
  • the replacement atom is bound to an H on the terminal end. For example, if a methylene unit of -CH 2 CH 2 CH 3 were optionally replaced with -0-, the resulting compound could be -OCH 2 CH 3 , -CH 2 OCH 3 , or -CH 2 CH 2 OH.
  • structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, (Z) and (E) double bond isomers, and (Z) and (E) conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention.
  • a substituent can freely rotate around any rotatable bonds.
  • a substituent can freely rotate around any rotatable bonds.
  • structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
  • compounds having the present structures except for the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13 C- or 14 C-enriched carbon are within the scope of this invention. Such compounds are useful, for example, as analytical tools or probes in biological assays.
  • the compounds of the present invention can exist in free form for treatment, or where appropriate, as a pharmaceutically acceptable salt, salts, or mixtures thereof.
  • the term "pharmaceutically acceptable salt” refers to salts of a compound which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
  • Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al . , describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1-19, incorporated herein by reference.
  • Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases. These salts can be prepared in situ during the final isolation and purification of the compounds. Acid addition salts can be prepared by 1) reacting the purified compound in its free-based form with a suitable organic or inorganic acid and 2) isolating the salt thus formed.
  • Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid
  • organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, glycolate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, palmoate, pect
  • Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N + (d- 4 alkyl) 4 salts.
  • This invention also envisions the quaternization of any basic nitrogen-containing groups of the compounds disclosed herein. Water or oil-soluble or dispersible products may be obtained by such quaternization.
  • Base addition salts can be prepared by 1) reacting the purified compound in its acid form with a suitable organic or inorganic base and 2) isolating the salt thus formed.
  • Base addition salts include alkali or alkaline earth metal salts.
  • Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like.
  • Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate.
  • Other acids and bases while not in themselves pharmaceutically acceptable, may be employed in the preparation of salts useful as intermediates in obtaining the compounds of the invention and their pharmaceutically acceptable acid or base addition salts.
  • HPLC Rt (min) refers to the HPLC retention time, in minutes, associated with the compound. Unless otherwise indicated, the HPLC method utilized to obtain the reported retention time is as follows:
  • LCMS Rt (min) refers to the LCMS retention time, in minutes, associated with the compound.
  • Mass spec samples are analyzed on a MicroMass Quattro Micro mass spectrometer operated in single MS mode with electrospray ionization. Samples are introduced into the mass spectrometer using chromatography. Mobile phase for all mass spec, analyses consists of 1OmM pH 7 ammonium acetate and a 1:1 acetonitrile- methanol mixture, column gradient conditions are 5%-100% acetonitrile-methanol over 3.5 mins gradient time and 5 mins run time on an ACE C8 3.0 x 75mm column. Flow rate is 1.2 ml/min.
  • Compound 4 can also be purified by column chromatography (SiO 2 , 8:1 heptane: EtOAc). 1 H NMR (CDCl 3 , 300 MHz): ⁇ 7.78 (dd, IH); 8.49 (d, IH) .

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Abstract

The present invention relates to a process for the synthesis of 5-fluoro-1H-pyrazolo [3, 4-b]pyridin-3-amine in high yield and purity. The present invention also relates to processes for the synthesis of 5-fluoro-1H-pyrazolo [3, 4- b] ρyridin-3-amine derivatives. These processes are useful for preparing biologically active compounds, particularly certain GSK-3 inhibitors, or derivatives thereof. Reagents and conditi ons : i. Pd ( OAc )2, PPh3, Et3N, H2CO2; i i. 1 ) (COCl )2, CH2Cl2, cat. DMF; 2 ) NH3 (g ), dioxane, i i i. TFAA, Et3N, CH2Cl2, O°C; iv. H2NNH2. H2O, n-butanol, reflux.

Description

PROCESS FOR PREPARING 5-FLUORO-1H-PYRAZOLO [3 , 4-B] PYRIDIN-3-AMINE AND DERIVATIVES THEREOF
CROSS REFERENCE TO RELATED APPLICATIONS [0001] This present application claims the benefit, under 35
U. S. C. §119, to United States Provisional Application Number 60/953,019, filed on July 31, 2007, the entire content of which is incorporated herein by reference.
TECHNICAL FIELD OF THE INVENTION
[0002] The present invention relates to a process for the synthesis of 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine in high yield and purity. The present invention also relates to a process for the synthesis of 5-fluoro-lH-pyrazolo [3, 4-b] pyridin- 3-amine derivatives. The process is useful for preparing biologically active compounds, particularly certain GSK-3 inhibitors, or derivatives thereof.
BACKGROUND OF THE INVENTION
[0003] 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine derivatives are known to be GSK-3 inhibitors (WO2004/013140) . [0004] Previous attempts at large scale production of 2-chloro- 5-fluoronicotinamide, one of the key intermediates of the synthesis of 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine, was not reproducible due to the large amounts of catalyst and hydrogen gas required. Moreover, large scale synthesis of the intermediate resulted in a mixture of starting material and product, which required separation.
[0005] Accordingly, the need exists for a process for the facile synthesis of 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine to obtain 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine derivatives in high yield and purity. SUMMARY OF THE INVENTION
[0006] The present invention provides a process for preparing a compound of formula 5:
Figure imgf000003_0001
5 comprising :
1) selectively de-chlorinating a compound of formula 1
Figure imgf000003_0002
1 under suitable de-chlorination conditions to form a compound of formula 2 :
Figure imgf000003_0003
2
2) treating the compound of formula 2 with suitable amide formation conditions to form a compound of formula 3:
Figure imgf000003_0004
3) reducing the compound of formula 3 under suitable reduction conditions to form a compound of formula 4 :
Figure imgf000003_0005
4 r
4) cyclizing a compound of formula 4 with H2NNH2-H2O under suitable cyclization conditions to form the compound of formula 5. [0007] The present invention also provides a process for making a compound of formula I :
Figure imgf000004_0001
I
Wherein Rx, Rγ, Z2 and Ring D are as defined herein. The processes of this invention comprise the step of synthesizing a compound of formula 5 and combining it with a compound of formula 6:
Figure imgf000004_0002
5 6; wherein Rx, Rγ, Z2 and Ring D are as defined herein and LG is a suitable leaving group; under suitable reaction conditions to form a compound of formula I .
[0008] The processes of this invention have the advantage of allowing preparation of compounds of formula I in high yield and purity, a preparation that is readily scaled up for large scale preparation .
[0009] These compounds of formula I are particularly useful as GSK-3 inhibitors. These compounds and pharmaceutically acceptable compositions thereof are also useful for treating or preventing a variety of diseases, disorders or conditions, including, but not limited to, an autoimmune, inflammatory, proliferative, or hyperproliferative disease, a neurodegenerative disease, or an immunologically-mediated disease . DETAILED DESCRIPTION OF THE INVENTION
[0010] One aspect of the invention provides a process for preparing a compound of formula 5:
Figure imgf000005_0001
5 comprising the step of:
1) selectively de-chlorinating a compound of formula 1
Figure imgf000005_0002
1 under suitable de-chlorination conditions to form a compound of formula 2 :
Figure imgf000005_0003
2
[0011] Another embodiment further comprises the step of treating the compound of formula 2 with suitable amide formation conditions to form a compound of formula 3:
Figure imgf000005_0004
3
[0012] Another embodiment further comprises the step of reducing the compound of formula 3 under suitable reduction conditions to form a compound of formula 4 :
Figure imgf000005_0005
[0013] Yet another embodiment further comprises the step of cyclizing a compound of formula 4 with H2NNH2.H2O under suitable cyclization conditions to form the compound of formula 5.
De-chlorination conditions
[0014] In one embodiment, the de-chlorination conditions comprise adding a palladium catalyst (such as Pd (OAc) 2), PPh3, a suitable base (such as Et3N) , and a suitable acid (such as formic acid HCOOH) . In some embodiments, this reaction is done in DMF under N2 atmosphere. The reaction can be monitored by analysis of aliquots taken from the reaction mixture, such as with 1HNMR analysis. In some embodiments, if the reaction is incomplete, more catalyst and HCOOH/Et3N can be added and the reaction can be stirred for longer. In some embodiments, the reaction is done at a temperature below 60° C. In some embodiments, at 50° C. In some embodiments, the reaction mixture, upon completion, is cooled to about 0° C, to which water is added. In some embodiments, the reaction mixture is then filtered through celite. The reaction mixture is basified to pH 9 (using a base such as 30% aq NaOH) and is subsequently washed with an organic solvent (such as EtOAc) . The mixture is then acidified to pH 1
(using an acid such as 12N HCl) and the mixture is then washed with sat. NaCl. In some embodiments, the organic phase is concentrated under reduced pressure to give 88% yield of a beige solid which can be used in the next step without further purification .
Amide formation conditions
[0015] Suitable amide formation conditions from a carboxylic acid are known to those skilled in the art. In one embodiment, the amide formation condition comprises a two-step process. In the first step, an acid chloride is generated (formula 2-1) . In the second step, ammonia (NH3) is added.
Figure imgf000007_0001
2-1
[0016] Acid chlorides can be formed from carboxylic acids via a variety of reagents that are known to one of skill in the art. Examples of such reagents include, but are not limited to, oxalyl chloride and thionyl chloride. In some embodiments, such chlorination reactions are done in the presence of DMF and DCM. In some embodiments, a solution of the carboxylic acid is cooled in a solution of DMF and DCM to about 00 C before the chlorinating reagent is added. In some embodiments, the resultant reaction mixture is stirred at room temperature until the reaction has gone to completion. In some embodiments, the resultant reaction mixture is concentrated in vacuo to form the acid chloride.
[0017] In the second step, ammonia is typically bubbled into a solution that contains the acid chloride and a suitable solvent. Suitable solvents include, but are not limited to, aprotic solvents. An aprotic solvent is a solvent which cannot donate a hydrogen bond. Examples of aprotic solvents include dioxane, tetrahydrofuran, ether, CH2Cl2, and chloroform.
Reduction Conditions
[0018] Suitable reduction conditions are known to one of skill in the art. In one embodiment, the reduction conditions comprise adding TFAA dropwise to a cooled (e.g., 0° C) suspension of the 2-chloro-5-fluoronicotinamide, Et3N and DCM. The reaction mixture is stirred for about 90 minutes at 0° C. Upon completion, the reaction mixture is diluted with a suitable solvent (e.g., DCM), washed with sat. aq. NaHCO3 and brine, and dried with a suitable drying agent (e.g., Na2SO4, MgSO4). The organic layer is filtered and concentrated to provide the desired compound. In some embodiments, the desired compound is purified via column chromatography.
Suitable Cyclization conditions
[0019] Suitable cyclization conditions are known to one of skill in the art. In one embodiment, 2-Chloro-5-fluoronicotinonitrile is refluxed with hydrazine monohydrate in butanol. In some embodiments, said reaction is refluxed for about 4 hours. The mixture is then cooled to room temperature and concentrated. The precipitate can then be successively washed on filter with water, Et2O, and dried in vacuo overnight to provide the desired compound.
[0020] The compound of formula 5 may be used to prepare compounds of formula I as described herein.
[0021] Another embodiment provides a process for preparing a compound of formula I :
Figure imgf000008_0001
wherein
Z2 is N or CRZ;
Rx is T^R3;
Rγ is T2-R10; or
Rx and Rγ are taken together with their intervening atoms to form a fused aromatic or non-aromatic 5-8 membered ring having 0-3 ring heteroatoms selected from oxygen, sulfur, or nitrogen, wherein any substitutable carbon on said fused ring formed by Rx and Rγ is substituted by T-R , and any substitutable nitrogen on said ring formed by Rx and Rγ is substituted by R4;
Rz is H, halo, or Ci-6 aliphatic, wherein the aliphatic is optionally substituted with 1-5 groups selected from halo, -CN, and -OR; each T and T1 is independently a bond or a C1-4 alkylidene chain;
T2 is independently a bond or a C1-4 alkylidene chain wherein up to three methylene units of the alkylidene chain are optionally replaced by -0-, -C(=0)-, -S(O)-, -S (0)2-, -S-, or -N(R4)-;
Ring D is a 4-7 membered monocyclic ring or 8-10 membered bicyclic ring selected from a heterocyclyl, aryl, heteroaryl, or carbocyclyl ring; said heterocyclyl or heteroaryl ring having 1-4 ring heteroatoms selected from nitrogen, oxygen or sulfur, wherein each substitutable ring carbon of Ring D is independently substituted with oxo, R1, or -R5 and any substitutable ring nitrogen is independently substituted with -R4;
R1 is selected from -halo, -CN, -NO2, T-V-R6, phenyl, 5-6 membered heteroaryl ring, 5-6 membered heterocyclyl ring, or Ci-6 aliphatic group, said phenyl, heteroaryl, and heterocyclyl rings each optionally substituted by up to three groups independently selected from halo, oxo, or -R8, said Ci-6 aliphatic group optionally substituted with halo, cyano, nitro, or oxygen, or R1 and an adjacent substituent taken together with their intervening atoms form said ring fused to Ring D;
V is -0-, -S-, -SO-, -SO2-, -N(R6) SO2-, -SO2N(R6)-, -N(R6)-, -CO-, -CO2-, -N (R6) CO-, -N (R6) C (O)O-, -N (R6) CON (R6) -, -N(R6) SO2N(R6) -, -N(R6)N(R6) -, -C(O)N(R6)-, -OC(O)N(R6)-, -C(R6)2O-, -C(R6)2S-, -C(R6)2SO-, -C(R6)2SO2-, -C (R6) 2SO2N (R6) -, -C(R6)2N(R6)-, -C (R6) 2N (R6) C(O)-, -C (R6) 2N (R6) C (0) 0-, - C (R6)=NN(R6) -, -C(R6)=N-0-, -C (R6) 2N (R6) N (R6) -, -C(R6)2N(R6) SO2N(R6) -, or -C (R6) 2N (R6) CON (R6) - ; each R3 and R10 is independently selected from -R, -halo, -OR, - C(=O)R, -CO2R, -COCOR, -COCH2COR, -NO2, -CN, -S(O)R, -S(O)2R, - SR, -N (R4) 2, -CON (R7) 2, -SO2N (R7) 2, -OC (=0) R, -N (R7) COR, -N (R7) CO2R", -N (R4) N (R4) 2, -N (R7) CON (R7) 2, -N (R7) SO2N (R7) 2, -N (R4) SO2R, or -OC (=0) N (R7) 2; each R is independently selected from hydrogen or an optionally substituted group selected from Ci_6 aliphatic, C6-io aryl, a heteroaryl ring having 5-10 ring atoms, or a heterocyclyl ring having 4-10 ring atoms; each R is optionally substituted with 0-5 R9 or J; each R4 is independently selected from -R7, -COR7, -CO2R",
-CON (R7) 2, or -SO2R7, or two R4 on the same nitrogen are taken together to form a 3-8 membered heterocyclyl or heteroaryl ring; wherein said heterocyclyl or heteroaryl ring is optionally substituted by 0-3 J4; each R5 is independently selected from -R, halo, -OR, -C(=O)R, -CO2R, -COCOR, -NO2, -CN, -S(O)R, -SO2R, -SR, -N(R4)2, -CON (R4) 2, -SO2N (R4) 2, -OC (=0) R, -N (R4) COR, -N (R4) CO2R", -N(R4)N(R4)2, -C (=NH)N(R4)2, -C (=NH) -OR, -N (R4) CON (R4) 2, -N(R4) SO2N (R4) 2, -N (R4) SO2R, or -OC (=0) N (R4) 2; each R6 is independently selected from hydrogen or Ci_4 aliphatic group optionally substituted with 0-3 J6; or two R6 groups on the same nitrogen atom are taken together with the nitrogen atom to form a 5-6 membered heterocyclyl or heteroaryl ring, wherein said heterocyclyl or heteroaryl ring is optionally substituted with 0-4 J6; each R7 is independently selected from hydrogen or R"; or two R7 on the same nitrogen are taken together with the nitrogen to form a 5-8 membered heterocyclyl or heteroaryl ring, wherein said heterocyclyl or heteroaryl ring is optionally substituted with 0-4 j"; each R8 is independently selected from -OR6, -SR6, -COR6, -SO2R6, -N (R6) 2, -N(R6)N(R6)2, -CN, -NO2, -CON (R6) 2, -CO2R6, or a Ci_4 aliphatic group, wherein said Ci_4 aliphatic group is optionally substituted with 0-3 J8; each R9 is -R', -halo, -OR', -C(=O)R', -CO2R', -COCOR',
COCH2COR', -NO2, -CN, -S(O)R', -S(O)2R', -SR', -N(R')2, -CON (R') 2, -SO2N (R') 2, -OC (=0) R', -N (R' ) COR' , -N (R' ) CO2 (Ci_6 aliphatic), -N (R' ) N (R' ) 2, -N (R' ) CON (R' ) 2, -N (R' ) SO2N (R' ) 2, -N (R') SO2R', -OC (=0) N(R' ) 2, =NN(R')2, =N-0R' , or =0; each R' is independently hydrogen or a Ci_6 aliphatic group optionally substituted with 0-4 J' ; or two R' , together with the atom(s) to which they are attached, form a 3-6 membered carbocyclyl or heterocyclyl wherein said carbocyclyl or heterocyclyl is optionally substituted with 0-4 J' and wherein said heterocyclyl contains 1-2 heteroatoms selected from 0, N, or S; each R" is independently Ci-6 aliphatic optionally substituted with 0-4 J"; and each J4, J', and J" is independently NH2, NH (d-4aliphatic) , N (Ci-4aliphatic) 2, halogen, Ci_4aliphatic, OH,
0 (Ci-4aliphatic) , NO2, CN, CO2H, CO2 (Ci_4aliphatic) , 0 (haloCi-z aliphatic) , or haloCi_4aliphatic; each J is halo, OH, or Ci-βaliphatic; each J6 and J8 is independently -halo, -OR, oxo, Ci-6 aliphatic, -C(=O)R, -CO2R, -COCOR, COCH2COR, -NO2, -CN, -S(O)R, -S(O)2R, -SR, -N(R4)2, -CON(R7)2, -SO2N(R7)2, -OC(=O)R, -N (R7) COR, -N(R7)CO2 (Ci-6 aliphatic), -N (R4) N (R4) 2, =NN(R4)2, =N-OR, -N (R7) CON (R7) 2, -N (R7) SO2N (R7) 2, -N (R4) SO2R, or -OC (=0) N (R7) 2; or 2 J6 or J8 groups, on the same atom or on different atoms, together with the atom(s) to which they are bound, form a 3-8 membered saturated, partially saturated, or unsaturated ring having 0-2 heteroatoms selected from 0, N, or S;
comprising the step of synthesizing a compound of formula 5 and combining it with a compound of formula 6:
Figure imgf000012_0001
5 6; wherein LG is a suitable leaving group; and Rx, Rγ, Z2, and Ring D are as defined herein for compounds of formula I; under suitable reaction conditions to form a compound of formula I.
[0022] In some embodiments, said Ring D has one or two ortho substituents independently selected from -R1, any substitutable non-ortho carbon position on Ring D is independently substituted by -R5.
[0023] Another embodiment provides a process for preparing a compound of formula I :
Figure imgf000012_0002
comprising the step of synthesizing a compound of formula 5 and combining it with a compound of formula 6:
Figure imgf000013_0001
wherein LG is a suitable leaving group; and Rx, Rγ, Z2, and Ring
D are as defined below for compounds of formula I; under suitable reaction conditions to form a compound of formula I; wherein
Z2 is N or CRZ;
Rx is T^R3;
Rγ is T2-R10; or
Rx and Rγ are taken together with their intervening atoms to form a fused aromatic or non-aromatic 5-8 membered ring having 0-3 ring heteroatoms selected from oxygen, sulfur, or nitrogen, wherein any substitutable carbon on said fused ring formed by Rx and Rγ is substituted by T-R3, and any substitutable nitrogen on said ring formed by Rx and Rγ is substituted by R4;
Rz is H, halo, or Ci-6 aliphatic, wherein the aliphatic is optionally substituted with 1-5 groups selected from halo, -CN, and -OR; each T and T1 is independently a bond or a Ci_4 alkylidene chain;
T2 is independently a bond or a Ci_4 alkylidene chain wherein up to three methylene units of the alkylidene chain are optionally replaced by -O-, -C(=O)-, -S(O)-, -S (O) 2-, -S-, or -N(R4)-;
Ring D is a 4-7 membered monocyclic ring or 8-10 membered bicyclic ring selected from a heterocyclyl, aryl, heteroaryl, or carbocyclyl ring; said heterocyclyl or heteroaryl ring having 1-4 ring heteroatoms selected from nitrogen, oxygen or sulfur, wherein each substitutable ring carbon of Ring D is independently substituted with oxo or -R5 and any substitutable ring nitrogen is independently substituted with -R4; each R3 and R10 is independently selected from -R, -halo, -OR, - C(=O)R, -CO2R, -COCOR, -COCH2COR, -NO2, -CN, -S(O)R, -S(O)2R, - SR, -N(R4)2, -CON (R7) 2, -SO2N (R7) 2, -OC (=0) R, -N (R7) COR, -N (R7) CO2R", -N (R4) N (R4) 2, -N (R7) CON (R7) 2, -N (R7) SO2N (R7) 2, -N (R4) SO2R, or -OC (=0) N (R7) 2; each R is independently selected from hydrogen or an optionally substituted group selected from Ci-6 aliphatic, Cβ-io aryl, a heteroaryl ring having 5-10 ring atoms, or a heterocyclyl ring having 4-10 ring atoms; each R is optionally substituted with 0-5 R9; each R4 is independently selected from -R7, -COR7, -CO2R",
-CON (R7) 2, or -SO2R7, or two R4 on the same nitrogen are taken together to form a 3-8 membered heterocyclyl or heteroaryl ring; each R5 is independently selected from -R, halo, -OR, -C(=O)R, -CO2R, -COCOR, -NO2, -CN, -S(O)R, -SO2R, -SR, -N(R4)2, -CON (R4) 2, -SO2N (R4) 2, -OC (=0) R, -N (R4) COR, -N (R4) CO2R", -N(R4)N(R4)2, -C (=NH)N(R4)2, -C (=NH) -OR, -N (R4) CON (R4) 2, -N(R4) SO2N (R4) 2, -N (R4) SO2R, or -OC (=0) N (R4) 2; each R7 is independently selected from hydrogen or R"; or two R7 on the same nitrogen are taken together with the nitrogen to form a 5-8 membered heterocyclyl or heteroaryl ring, wherein said heterocyclyl or heteroaryl ring is optionally substituted with 0-4 j"; each R9 is -R', -halo, -OR', -C(=O)R', -CO2R', -COCOR',
COCH2COR', -NO2, -CN, -S(O)R', -S(O)2R', -SR', -N (R') 2, -CON (R') 2, -SO2N (R') 2, -OC (=0) R', -N (R' ) COR' , -N (R' ) CO2 (Ci_6 aliphatic), -N (R' ) N (R' ) 2, -N (R' ) CON (R' ) 2, -N (R' ) SO2N (R' ) 2, -N (R') SO2R', -OC (=0) N (R' ) 2, =NN(R')2, =N-0R' , or =0; each R' is independently hydrogen or a Ci-6 aliphatic group optionally substituted with 0-4 J' ; or two R' , together with the atom(s) to which they are attached, form a 3-6 membered carbocyclyl or heterocyclyl wherein said carbocyclyl or heterocyclyl is optionally substituted with 0-4 J' and wherein said heterocyclyl contains 1-2 heteroatoms selected from O, N, or S; each R" is independently Ci-6 aliphatic optionally substituted with 0-4 J"; and each J' and J" is independently NH2, NH (Ci-4aliphatic) , N (Ci_4aliphatic) 2, halogen, Ci_4aliphatic, OH,
O (Ci-4aliphatic) , NO2, CN, CO2H, CO2 (C1_4aliphatic) , 0 (haloCi_4 aliphatic), or haloCi_4aliphatic .
[0024] In some embodiments, the compound of formula 5 is synthesized according to the methods described herein. [0025] In some embodiments, LG is selected from halogen groups (such as F, Cl, Br, or I); electronegative sulfonyl groups (such as arylsulfonyloxy, alkylsulfonyloxy, trifluoromethane- sulfonyloxy, alkylsulfonyl (such as methylsulfonyl) , and alkylsulfoxide (such as methyl sulfoxide) . In other embodiments, LG is halogen. In some embodiments, LG is chloro. [0026] In some embodiments, Z2 is N. In some embodiments, CRZ . [0027] In some embodiments, the process is used to prepare a compound of one of the following formulae:
Figure imgf000015_0001
[0028] In some embodiments, Ring D is a 5-10 membered cycloaliphatic or a 5-10 membered heterocyclyl where said heterocyclyl contains 1-2 heteroatoms selected from O, N, or S; wherein the cycloaliphatic or heterocyclyl is optionally substituted with 1-5 -R5. In some embodiments, 1-2 -R5. In some embodiments, Ring D is bonded to the pyrimidine via a carbon atom. In some embodiments, said cycloaliphatic or heterocyclyl is optionally substituted with 1-2 -R5 wherein -R5 is halo or Ci- 4alkyl. In some embodiments, -R5 is fluoro or methyl. [0029] In some embodiments, Ring D is a 4-7 membered monocyclic cycloaliphatic or heterocyclyl ring or an 8-10 membered bicyclic cycloaliphatic or heterocyclyl ring.
[0030] In other embodiments, Ring D is a 5-7 membered cycloaliphatic. In some embodiments, Ring D is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, or adamantyl . In other embodiments, Ring D is a 5-7 membered heterocyclyl containing 1 heteroatom. In yet other embodiments, Ring D is a 6-membered heterocyclyl containing one oxygen atom. In some embodiments, Ring D contains at least one nitrogen atom. In some embodiments, Ring D is an optionally substituted ring selected from piperidinyl, piperazinyl, pyrrolidinyl, morpholinyl, 1, 2, 3, 4-tetrahydroisoquinolinyl, 1,2,3,4- tetrahydroquinolinyl, 2, 3-dihydro-lH-isoindolyl, 2, 3-dihydro-lH- indolyl, or isoquinolinyl . In some embodiments, Ring D is optionally substituted tetrahydronaphthyl, benzodioxinyl, indanyl, indolinyl, or isoquinolinyl. In another embodiment, Ring D is tetrahydro-2H-pyran .
[0031] In another embodiment, Ring D is a 5-7 membered monocyclic aryl or heteroaryl ring, said heteroaryl ring having 1-4 ring heteroatoms selected from nitrogen, oxygen or sulfur. In some embodiments, Ring D is an optionally substituted ring selected from phenyl, pyridinyl, quinolinyl, or naphthyl . In other embodiments, Ring D is phenyl, pyridinyl, pyrimidinyl, pyridazinyl, pyrazinyl, or 1, 2, 4-triazinyl ring. In yet other embodiments, Ring D is phenyl or pyridinyl. In some other embodiments, Ring D is phenyl, imidazolyl, pyrazolyl, pyridyl, pyridazinyl, pyrazinyl, naphthyl, benzimidazolyl, benzthiazolyl, quinolinyl, quinazolinyl, isobenzofuran, indolyl, or indazolyl. [0032] In some embodiments, Ring D is optionally substituted. In some embodiments, Ring D is phenyl, wherein the phenyl is optionally substituted with 1-5 -R5.
[0033] In other embodiments, Ring D has one or two ortho substituents independently selected from -R1; and any substitutable non-ortho carbon position on Ring D is independently substituted with -R5. In yet other embodiments, two adjacent substituents on Ring D are optionally taken together with their intervening atoms to form a fused, unsaturated or partially unsaturated, 5-6 membered ring having 0-3 heteroatoms selected from oxygen, sulfur or nitrogen, wherein said fused ring is optionally substituted with halo, oxo, or -R8.
[0034] In some embodiments, R1 is selected from -halo, -CN, -NO2, T-V-R , phenyl, 5-6 membered heteroaryl ring, 5-6 membered heterocyclyl ring, or a Ci-6 aliphatic group; wherein said phenyl, heteroaryl, and heterocyclyl ring is each optionally substituted with up to three groups independently selected from halo, oxo, or -R ; wherein said Ci-6 aliphatic group is optionally substituted with halo, cyano, nitro, OH, or oxo. In other embodiments, R1 and an adjacent substituent taken together with their intervening atoms form said ring fused to Ring D. [0035] According to another embodiment, R1 is -halo, an optionally substituted Ci-6 aliphatic group, phenyl, -COR6, -OR6, -CN, -SO2R6, -SO2NH2, -N (R6) 2, -CO2R6, -CONH2, -NHCOR6, -OC(O)NH2, or -NHSO2R6. In some embodiments, R1 is -halo, a Ci-6 haloaliphatic group, an optionally substituted Ci-6 aliphatic group, phenyl, or -CN. In other embodiments, R1 is -halo, -CN, or a Ci-4 aliphatic group optionally substituted with halogen. In some embodiments, R1 is -halo; in some embodiments, chloro. In some embodiments, R1 is chloro or CF3. In some embodiments, R1 is -halo, a Ci-6 haloaliphatic group, an optionally substituted Ci-6 aliphatic group, phenyl, or -CN and Rγ is azetidine. In some embodiments, said Ci-6 aliphatic group is optionally substituted with halo.
[0036] In some embodiments, Ring D is a 3-8 membered cycloalkyl optionally substituted with 1-2 halo. In some embodiments, said halo is chloro or fluoro.
[0037] In some embodiments, each R6 is independently selected from hydrogen or Ci_4 aliphatic group optionally substituted with 0-3 J6; or two R6 groups on the same nitrogen atom are taken together with the nitrogen atom to form a 5-6 membered heterocyclyl or heteroaryl ring, wherein said heterocyclyl or heteroaryl ring is optionally substituted with 0-4 J6. [0038] In other embodiments, each R8 is independently selected from -OR6, -SR6, -COR6, -SO2R6, -N(R6)2, -N (R6) N (R6) 2, -CN, -NO2, -CON (R6) 2, -CO2R6, or a Ci_4 aliphatic group, wherein said Ci_4 aliphatic group is optionally substituted with 0-3 J8. [0039] In yet other embodiments, each J6 and J8 is independently -halo, -OR, oxo, Ci-6 aliphatic, -C(=O)R, -CO2R, -COCOR, COCH2COR, -NO2, -CN, -S(O)R, -S(O)2R, -SR, -N(R4)2, -CON (R7) 2, - SO2N (R7) 2, -OC (=0) R, -N (R7) COR, -N (R7) CO2 (Ci_6 aliphatic), - N(R4)N(R4)2, =NN(R4)2, =N-0R, -N (R7) CON (R7) 2, -N (R7) SO2N (R7) 2, - N (R4) SO2R, or -OC (=0) N (R7) 2; or 2 J6 or J8 groups, on the same atom or on different atoms, together with the atom(s) to which they are bound, form a 3-8 membered saturated, partially saturated, or unsaturated ring having 0-2 heteroatoms selected from 0, N, or S . [0040] In some embodiments, Rx is H or Ci-6 aliphatic, wherein the aliphatic is optionally substituted with 1-5 halo. In other embodiments, Rx is H or Ci_4 alkyl. In some embodiments, the alkyl is methyl, ethyl, cyclopropyl, or isopropyl. In some embodiments, the halo is fluoro. In yet other embodiments, Rx is hydrogen, Ci-4aliphatic, or halo. In some embodiments, Rx is hydrogen, fluoro, methyl, or ethyl. In other embodiments, Rx is hydrogen .
[0041] In another embodiment, Rγ is τ2-R10 wherein T2 is a bond. In some embodiments, Rγ is piperidinyl, piperazinyl, pyrrolidinyl, or morpholinyl.
[0042] In other embodiments, Rγ is Ci_4 alkyl optionally substituted with 0-2 R9. In some embodiments, R9 is OH or F. In some embodiments, Rγ is CH3, CF3, Cl, or C(CH3)2OH. In other embodiments, Rγ is halo; in some embodiments, chloro. [0043] In other embodiments, Rx and Rγ are both d-4 alkyl. In some embodiments, Rx and Rγ are methyl. In other embodiments, Rx is hydrogen and Rγ is not hydrogen. In some embodiments, Rx is hydrogen and Rγ is τ2-R10 wherein T2 is a bond, wherein R10 is not hydrogen. In some embodiments, Rx is hydrogen and Rγ is CH3, CF3, Cl, or C(CH3)2OH. [0044] In other embodiments, Rγ is represented by formula ii-a:
"X
F-5—T2 R9-N-|J
(J)0-S ii-a .
[0045] In some embodiments, T2 is a bond. In some embodiments, R9 is -R7, -COR7, -CO2R", -CON (R7) 2, or -SO2R7.
[0046] In another embodiment, Rz is H or Ci_4 alkyl. In another embodiment, Rz is H or methyl. In some embodiments, R10 is an optionally substituted azetidine. In another embodiment, Rγ is represented by formula i:
Figure imgf000020_0001
i . 2. In yet another embodiment, Rγ is represented by formula iii:
Figure imgf000020_0002
iii .
[0047] In some embodiments, Rγ is azetidine and Ring D is an optionally substituted ring selected from phenyl, pyridinyl, pyrimidinyl, pyridazinyl, pyrazinyl, 1, 2, 4-triazinyl, imidazolyl, pyrazolyl, benzimidazolyl, benzthiazolyl, quinazolinyl, isobenzofuran, indolyl, indazolyl, quinolinyl, or naphthyl .
[0048] Another embodiment provides a process for preparing a compound of formula I wherein Rx is hydrogen or Ci-4aliphatic;
Λ
Rγ is I—' (J)o-6 ; Ci-4 alkyl optionally substituted with 0-2 J; or a 6 membered heterocyclyl containing 1-2 heteroatoms selected from O, N, or S;
J is halo, OH, or Ci-4aliρhatic;
Ring D is phenyl, C3-10 cycloalkyl, or 5-7 membered heterocyclyl containing 1-2 heteroatoms selected from O, N, or S;
R1 is Ci_4alkyl, CF3, or halo;
R5 is H; wherein the remaining variables are as defined herein.
[0049] Another embodiment provides a process for preparing a compound of formula I wherein
Rx is hydrogen, methyl, or ethyl; R is
Figure imgf000021_0001
methyl, CF3, Cl, morpholinyl, or C(CH3)2OH; Ring D is phenyl, tetrahydro-2H-pyran, adamantyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl; R1 is methyl, CF3, or halo; R5 is H; wherein the remaining variables are as defined herein. [0050] Another embodiment provides a process for preparing a compound of formula I wherein Rx is hydrogen or methyl; Rγ is methyl;
Ring D is phenyl or cyclohexyl; R1 is methyl, CF3, or Cl; R5 is H; wherein the remaining variables are as defined herein.
SCHEMES
[0051] Below are various schemes that show how to make compounds of this invention using the 5-fluoro-lH-pyrazolo [3, 4-b] pyridin- 3-amine intermediate.
Scheme I
Figure imgf000022_0001
I-l 1-2 1-3
Figure imgf000022_0002
Reagents and conditions: (i) HCl, Et2O/MeOH, (ii) NH3, EtOH; (iii) Et3N, EtOH , reflux; (iv) POCl3, reflux; (v) 5-fluoro-lH- pyrazolo [3, 4-b] pyridin-3-amine, DIPEA, NaI, DMF, 1200C.
[0052] Scheme I above shows a general synthetic route that is used for preparing the compounds 1-5. Compounds of formula 1-5 can be prepared from intermediate I-l. The formation of amidine 1-2 is achieved by treating nitrile derivative I-l with HCl in the presence of methanol and then treating the intermediate imidate with NH3 in ethanol. Intermediate 1-2 is then treated with the corresponding beta-ketoester via reflux in EtOH. The corresponding hydroxypyrimidine intermediate is treated with POCl3 to yield chloroderivative 1-4. This reaction is amenable to a variety of amidines (1-3) . The chloropyrimidine 1-4 is treated with 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine in the presence of DIPEA and NaI to yield the final compound 1-5. Scheme II
Figure imgf000023_0001
II-l π-2 π-3
Figure imgf000023_0002
Reagents and conditions: (i) EtONa, EtOH, reflux; (ii) POCl3, reflux; (iii) 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine, NaI, DMF, 1100C, (iv) Rγ [wherein Rγ is bonded via N-atom] n-butanol, 1080C.
[0053] Scheme II above shows a general synthetic route that is used for preparing the compounds II-5 wherein Rγ is bonded to the pyrimidine via a nitrogen atom. Compounds of formula II-5 can be prepared from intermediate II-3. The formation of intermediate II-3 is achieved by reacting diethyl malonate (II- 1) with the corresponding amidine (II-2) in the presence of EtONa as a base in refluxing ethanol. The crude is then treated with POCI3 to yield dichloropyrimidine intermediate II-3. The dichloropyrimidine intermediate is sequentially treated with IH- pyrazolo [ 3, 4-b] pyridin-3-amine and Rγ amine derivatives to yield final compounds II-5. These two reactions sequence are amenable to a variety of amines (Rγ) , such as heterocyclic and alkyl amines . Scheme III
Figure imgf000024_0001
Reagents and conditions: (i) mCPBA, EtOAc; (ii) POCl3; (iii) PdPPh3) 2C12, Ba(OH)2, DME-H2O, 110 0C; (iv) 5-fluoro-lH- pyrazolo [3, 4-b] pyridin-3-amine, Pd(OAc)2, Xantphos, K2CO3, dioxane, 120 0C.
[0054] Scheme III above shows a general synthetic route that is used for preparing the compounds III-5. Compounds of formula III-5 can be prepared from intermediate III-l. The formation of chloropyridine derivative III-2 is achieved by treating the corresponding pyridine III-l with m-CPBA in EtOAc followed by conversion of the corresponding N-oxide to the chloropyridine by treating it with POCl3. Intermediate III-2 is then reacted with the corresponding boronic acid derivative to yield compound III- 3 using Suzuki coupling conditions well known for those skilled in the art. This reaction is amenable to a variety of boronic acid derivatives. The pyridine III-3 is then converted in a chloropyridine derivative III-4 using the same two step procedures as used in step 1, m-CPBA oxidation followed by POCl3 treatment. Intermediate III-4 is then treated with 5-fluoro-lH- pyrazolo [3, 4-b] pyridin-3-amine in the presence of Pd as a catalyst to yield the final compound III-5.
Scheme IV
Figure imgf000025_0001
IV-I IV-2 IV-3
Figure imgf000025_0002
IV-4 IV-5
Reagents and conditions : (i) Meldrum' s acid, DMAP, CDI, CH2Cl2 00C to r.t., and then EtOH, reflux; (ii) Et3N, EtOH , reflux; (iii) POCI3, reflux; (iv) 5-fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine, DIPEA, NaI, DMF, 1200C; (v) TFA, DCM.
[0055] Scheme IV above shows a general synthetic route that is used for preparing the compounds of formula IV-5. Compounds of formula 5 can be prepared from intermediate IV-I. The formation of derivative IV-2 is achieved by treating intermediate IV-I with Meldrum' s acid in the presence of CDI, after coupling and decarboxylation the resulting acid is esterified by treating the crude mixture with refluxing ethanol. Intermediate IV-2 is then treated with amidine under reflux in EtOH and the corresponding hydroxypyrimidine intermediate is treated with POCI3 to yield intermediate IV-4. This reaction is amenable to a variety of amidines IV-3. The chloropyrimidine IV-4 is treated with 5- fluoro-lH-pyrazolo [3, 4-b] pyridin-3-amine in the presence of DIPEA and NaI and finally treated with TFA to remove the protecting group to yield the final compound IV-5. [0056] Other optionally substituted azetidines intermediates can be made according to the methods described in WO 2007/056221. [0057] Compounds of this invention include those described generally above, and are further illustrated by the classes, subclasses, and species disclosed herein. As used herein, the following definitions shall apply unless otherwise indicated. For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75th Ed. Additionally, general principles of organic chemistry are described in "Organic Chemistry", Thomas Sorrell, University Science Books, Sausalito: 1999, and "March's Advanced Organic Chemistry", 5th Ed., Ed.: Smith, M. B. and March, J., John Wiley & Sons, New York: 2001, the entire contents of which are hereby incorporated by reference.
[0058] As described herein, a specified number range of atoms includes any integer therein. For example, a group having from 1-4 atoms could have 1, 2, 3, or 4 atoms.
[0059] As described herein, compounds of the invention may optionally be substituted with one or more substituents, such as are illustrated generally above, or as exemplified by particular classes, subclasses, and species of the invention. It will be appreciated that the phrase "optionally substituted" is used interchangeably with the phrase "substituted or unsubstituted. " In general, the term "substituted", whether preceded by the term "optionally" or not, refers to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent. Unless otherwise indicated, an optionally substituted group may have a substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position. Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds.
[0060] The term "stable", as used herein, refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, recovery, purification, and use for one or more of the purposes disclosed herein. In some embodiments, a stable compound or chemically feasible compound is one that is not substantially altered when kept at a temperature of 4O0C or less, in the absence of moisture or other chemically reactive conditions, for at least a week. [0061] The term "aliphatic" or "aliphatic group", as used herein, means a straight-chain (i.e., unbranched) or cyclic, branched or unbranched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation that has a single point of attachment to the rest of the molecule. Unless otherwise specified, aliphatic groups contain 1-20 aliphatic carbon atoms. In some embodiments, aliphatic groups contain 1-10 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-8 aliphatic carbon atoms. In still other embodiments, aliphatic groups contain 1-6 aliphatic carbon atoms, and in yet other embodiments aliphatic groups contain 1-4 aliphatic carbon atoms. Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, or alkynyl groups. Specific examples include, but are not limited to, methyl, ethyl, isopropyl, n-propyl, sec-butyl, vinyl, n-butenyl, ethynyl, and tert-butyl. [0062] The term "cycloaliphatic" (or "carbocycle" or "carbocyclyl" or "cycloalkyl") refers to a monocyclic C3-C8 hydrocarbon or bicyclic C8-C12 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule wherein any individual ring in said bicyclic ring system has 3-7 members. Suitable cycloaliphatic groups include, but are not limited to, cycloalkyl and cycloalkenyl groups. Specific examples include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclopropenyl, and bridged systems, such as bicyclodecane or bicycloheptane .
[0063] The term "heterocycle", "heterocyclyl", or "heterocyclic" as used herein means non-aromatic, monocyclic, bicyclic, or tricyclic ring systems in which one or more ring members are an independently selected heteroatom. In some embodiments, the "heterocycle", "heterocyclyl", or "heterocyclic" group has three to fourteen ring members in which one or more ring members is a heteroatom independently selected from oxygen, sulfur, nitrogen, or phosphorus, and each ring in the system contains 3 to 7 ring members .
[0064] Suitable heterocycles include, but are not limited to, 3- lH-benzimidazol-2-one, 3- (1-alkyl) -benzimidazol-2-one, 2- tetrahydrofuranyl, 3-tetrahydrofuranyl, 2-tetrahydrothiophenyl, 3-tetrahydrothiophenyl, 2-morpholino, 3-morpholino, 4- morpholino, 2-thiomorpholino, 3-thiomorpholino, 4- thiomorpholino, 1-pyrrolidinyl, 2-pyrrolidinyl, 3-pyrrolidinyl, 1-tetrahydropiperazinyl, 2-tetrahydropiperazinyl, 3- tetrahydropiperazinyl, 1-piperidinyl, 2-piperidinyl, 3- piperidinyl, 1-pyrazolinyl, 3-pyrazolinyl, 4-pyrazolinyl, 5- pyrazolinyl, 1-piperidinyl, 2-piperidinyl, 3-piperidinyl, 4- piperidinyl, 2-thiazolidinyl, 3-thiazolidinyl, 4-thiazolidinyl, 1-imidazolidinyl, 2-imidazolidinyl, 4-imidazolidinyl, 5- imidazolidinyl, indolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, benzothiolane, benzodithiane, and 1,3- dihydro-imidazol-2-one .
[0065] Cyclic groups, (e.g. cycloaliphatic and heterocycles) , can be linearly fused, bridged, or spirocyclic. [0066] The term "heteroatom" means one or more of oxygen, sulfur, nitrogen, or phosphorus, (including, any oxidized form of nitrogen, sulfur, or phosphorus; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3, 4-dihydro-2H-pyrrolyl) , NH (as in pyrrolidinyl) or NR+ (as in N-substituted pyrrolidinyl) ) . [0067] The term "unsaturated", as used herein, means that a moiety has one or more units of unsaturation .
[0068] The term "alkoxy", or "thioalkyl", as used herein, refers to an alkyl group, as previously defined, attached to the principal carbon chain through an oxygen ("alkoxy") or sulfur rthioalkyl") atom.
[0069] The terms "haloalkyl", "haloalkenyl", "haloaliphatic", and "haloalkoxy" mean alkyl, alkenyl or alkoxy, as the case may be, substituted with one or more halogen atoms. The terms "halogen", "halo", and "hal" mean F, Cl, Br, or I. [0070] The term "aryl" used alone or as part of a larger moiety as in "aralkyl", "aralkoxy", or "aryloxyalkyl", refers to monocyclic, bicyclic, and tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members. The term "aryl" may be used interchangeably with the term "aryl ring". The term "aryl" also refers to heteroaryl ring systems as defined hereinbelow. [0071] The term "heteroaryl", used alone or as part of a larger moiety as in "heteroaralkyl" or "heteroarylalkoxy", refers to monocyclic, bicyclic, or tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic, at least one ring in the system contains one or more heteroatoms, and wherein each ring in the system contains 3 to 7 ring members. The term "heteroaryl" may be used interchangeably with the term "heteroaryl ring" or the term "heteroaromatic" . Suitable heteroaryl rings include, but are not limited to, 2-furanyl, 3-furanyl, N-imidazolyl, 2- imidazolyl, 4-imidazolyl, 5-imidazolyl, benzimidazolyl, 3- isoxazolyl, 4-isoxazolyl, 5-isoxazolyl, 2-oxazolyl, 4-oxazolyl, 5-oxazolyl, N-pyrrolyl, 2-pyrrolyl, 3-pyrrolyl, 2-pyridyl, 3- pyridyl, 4-pyridyl, 2-pyrimidinyl, 4-pyrimidinyl, 5-pyrimidinyl, pyridazinyl (e.g., 3-pyridazinyl) , 2-thiazolyl, 4-thiazolyl, 5- thiazolyl, tetrazolyl (e.g., 5-tetrazolyl) , triazolyl (e.g., 2- triazolyl and 5-triazolyl) , 2-thienyl, 3-thienyl, benzofuryl, benzothiophenyl, indolyl (e.g., 2-indolyl) , pyrazolyl (e.g., 2- pyrazolyl) , isothiazolyl, 1, 2, 3-oxadiazolyl, 1, 2, 5-oxadiazolyl, 1, 2, 4-oxadiazolyl, 1, 2, 3-triazolyl, 1, 2, 3-thiadiazolyl, 1,3,4- thiadiazolyl, 1, 2, 5-thiadiazolyl, purinyl, pyrazinyl, 1,3,5- triazinyl, quinolinyl (e.g., 2-quinolinyl, 3-quinolinyl, 4- quinolinyl), and isoquinolinyl (e.g., 1-isoquinolinyl, 3- isoquinolinyl, or 4-isoquinolinyl) .
[0072] The term "protecting group" and "protective group" as used herein, are interchangeable and refer to an agent used to temporarily block one or more desired reactive sites in a multifunctional compound. In certain embodiments, a protecting group has one or more, or preferably all, of the following characteristics: a) is added selectively to a functional group in good yield to give a protected substrate that is b) stable to reactions occurring at one or more of the other reactive sites; and c) is selectively removable in good yield by reagents that do not attack the regenerated, deprotected functional group. Exemplary protecting groups are detailed in Greene, T. W., Wuts, P. G in "Protective Groups in Organic Synthesis", Third Edition, John Wiley & Sons, New York: 1999 (and other editions of the book) , the entire contents of which are hereby incorporated by reference. The term "nitrogen protecting group", as used herein, refers to an agents used to temporarily block one or more desired nitrogen reactive sites in a multifunctional compound. Preferred nitrogen protecting groups also possess the characteristics exemplified above, and certain exemplary nitrogen protecting groups are also detailed in Chapter 7 in Greene, T. W., Wuts, P. G in "Protective Groups in Organic Synthesis", Third Edition, John Wiley & Sons, New York: 1999, the entire contents of which are hereby incorporated by reference .
[0073] In some embodiments, one or more methylene units of an alkyl or aliphatic chain can be optionally replaced with another atom or group of atoms. Examples of such atoms or groups would include, but are not limited to, -NR-, -O-, -S-, -CO2-, -OC(O)-, -C(O)CO-, -C(O)-, -C(O)NR-, -C(=N-CN), -NRCO-, -NRC(O)O-, -SO2NR-
-NRSO2-, -NRC(O)NR-, -OC(O)NR-, -NRSO2NR-, -SO-, or -SO2-, wherein R is defined herein. Unless otherwise specified, the optional replacements form a chemically stable compound. Optional replacements can occur both within the chain and at either end of the chain; i.e. both at the point of attachment and/or also at the terminal end. Two optional replacements can also be adjacent to each other within a chain so long as it results in a chemically stable compound. The optional replacements can also completely replace all of the carbon atoms in a chain. For example, a C3 aliphatic can be optionally replaced by -NR-, -C(O)-, and -NR- to form -NRC(O)NR- (a urea). [0074] Unless otherwise specified, if the replacement occurs at the terminal end, the replacement atom is bound to an H on the terminal end. For example, if a methylene unit of -CH2CH2CH3 were optionally replaced with -0-, the resulting compound could be -OCH2CH3, -CH2OCH3, or -CH2CH2OH.
[0075] Unless otherwise indicated, structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, (Z) and (E) double bond isomers, and (Z) and (E) conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention.
[0076] Unless otherwise indicated, all tautomeric forms of the compounds of the invention are within the scope of the invention .
[0077] Unless otherwise indicated, a substituent can freely rotate around any rotatable bonds. For example, a substituent
drawn as
Figure imgf000032_0001
also represents [0078] Additionally, unless otherwise indicated, structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms. For example, compounds having the present structures except for the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13C- or 14C-enriched carbon are within the scope of this invention. Such compounds are useful, for example, as analytical tools or probes in biological assays. [0079] It will also be appreciated that the compounds of the present invention can exist in free form for treatment, or where appropriate, as a pharmaceutically acceptable salt, salts, or mixtures thereof.
[0080] As used herein, the term "pharmaceutically acceptable salt" refers to salts of a compound which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
[0081] Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al . , describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1-19, incorporated herein by reference. Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases. These salts can be prepared in situ during the final isolation and purification of the compounds. Acid addition salts can be prepared by 1) reacting the purified compound in its free-based form with a suitable organic or inorganic acid and 2) isolating the salt thus formed.
[0082] Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, glycolate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, palmoate, pectinate, persulfate, 3- phenylpropionate, phosphate, picrate, pivalate, propionate, salicylate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like. Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N+ (d-4alkyl) 4 salts. This invention also envisions the quaternization of any basic nitrogen-containing groups of the compounds disclosed herein. Water or oil-soluble or dispersible products may be obtained by such quaternization.
[0083] Base addition salts can be prepared by 1) reacting the purified compound in its acid form with a suitable organic or inorganic base and 2) isolating the salt thus formed. Base addition salts include alkali or alkaline earth metal salts. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate. Other acids and bases, while not in themselves pharmaceutically acceptable, may be employed in the preparation of salts useful as intermediates in obtaining the compounds of the invention and their pharmaceutically acceptable acid or base addition salts.
[0084] In order that this invention be more fully understood, the following preparative examples are set forth. These examples are for the purpose of illustration only and are not to be construed as limiting the scope of the invention in any way. EXAMPLES
[0085] As used herein, the term "HPLC Rt (min) " refers to the HPLC retention time, in minutes, associated with the compound. Unless otherwise indicated, the HPLC method utilized to obtain the reported retention time is as follows:
Column: ACE C8 column, 4.6 x 150 mm
Gradient: 0-100% acetonitrile+methanol 60:40 (2OmM Tris phosphate)
Flow rate: 1.5 mL/minute
Detection: 225 nm.
[0086] As used herein, the term "LCMS Rt (min) " refers to the LCMS retention time, in minutes, associated with the compound. Mass spec, samples are analyzed on a MicroMass Quattro Micro mass spectrometer operated in single MS mode with electrospray ionization. Samples are introduced into the mass spectrometer using chromatography. Mobile phase for all mass spec, analyses consists of 1OmM pH 7 ammonium acetate and a 1:1 acetonitrile- methanol mixture, column gradient conditions are 5%-100% acetonitrile-methanol over 3.5 mins gradient time and 5 mins run time on an ACE C8 3.0 x 75mm column. Flow rate is 1.2 ml/min.
Example 1
The overall synthetic scheme for the synthesis of 5-fIuoro-1H- pyrazolo [3, 4-b] pyridin-3-amine (5) is depicted below.
Scheme V
Figure imgf000036_0001
2
Figure imgf000036_0002
Reagents and conditions : i . Pd (OAc) 2 , PPh3 , Et3N, H2CO2 ; ii . 1 )
(COCl ) 2 , CH2Cl2 , cat . DMF; 2 ) NH3 (g) , dioxane , iii . TFAA, Et3N, CH2Cl2 , 0 ° C ; iv . H2NNH2 . H2O, n-butanol , reflux
2-Chloro-5-fluoronicotinic acid (2)
[0087] To a round-bottomed flask under a N2 atmosphere were added degassed DMF (270 mL) , Pd(OAc)2 (0.05 eq, 2.7 g, 11.9 mmol), PPh3 (0.1 eq, 6.2 g, 23.8 mmol) and degassed Et3N (6 eq, 200 mL, 1428.6 mmol) . The mixture was stirred 20 minutes then HCOOH (3 eq, 28 mL, 714.3 mmol) was added followed after 5 minutes by 2, 6-dichloro-5-fluoronicotinic acid (50 g, 238.1 mmol) and the mixture was stirred at 500C. The reaction was followed by analysis (IH NMR) of a worked-up aliquot. When all starting material was consumed (24 h) , the mixture was cooled to 0°C and water (500 mL) was added. After 20 minutes, The mixture was filtered through a pad of Celite that was rinsed with water. The mixture was basified to pH 9 with 30% aq. NaOH and washed with EtOAc (2x) . HCl (12 N) was added slowly to pH 1 and the solution was saturated with NaCl. The mixture was extracted with EtOAc (3x) . The combined organic extracts were washed with brine, dried (Na2SO4) and concentrated under reduced pressure to give 37 g (88%) of a beige solid used in the next step without further purification. 1H NMR (DMSO-d6, 300 MHz): δ 8.16 (dd, IH) ; 8.58 (d, IH) . 2-Chloro-5-fluoronicotinamide (3)
[0088] To a solution of 2-chloro-5-fluoronicotinic acid 6 (50 g, 285 mmol) and DMF (2 mL, 28 mmol) in DCM (400 mL) at 00C was added oxalyl chloride (64 mL, 741 mmol) dropwise. The reaction mixture was stirred at room temperature overnight and concentrated in vacuo. The resulting yellow liquid was dissolved in 1,4-dioxane (600 mL) , cooled at 00C and NH3 (g) was bubbled through the solution for 30 minutes. The mixture was stirred at room temperature overnight. The resulting mixture was filtered and the filtrate was concentrated to give compound 3 (44 g, 89%) as a beige solid. 1H NMR (DMSO-d6, 300 MHz): δ 7.84 (s, IH), 7.96 (dd, IH), 8.09 (s, IH), 8.49 (d, IH).
2-Chloro-5-fluoronicotinonitrile (4)
[0089] A suspension of crude compound 3 (65 g, 372.4 mmol) and Et3N (114 mL, 819.2 mmol) in DCM (700 mL) was cooled to 00C and TFAA (57 mL, 409.6 mmol) was added dropwise. The resulting yellow solution was stirred for 90 minutes at 00C, diluted with DCM, washed with sat. aq. NaHCO3 and brine, and dried (Na2SO4) . The mixture was filtered and concentrated. Kugel Rohr distillation of the residue (~70°C/l mbar) gave 50 g (86%) of compound 4 as a beige solid.
Compound 4 can also be purified by column chromatography (SiO2, 8:1 heptane: EtOAc). 1H NMR (CDCl3, 300 MHz): δ 7.78 (dd, IH); 8.49 (d, IH) .
5-Fluoro-lH-pyrazolo [3, 4-b]pyridin-3-amine (5) [0090] To a solution of compound 4 (50 g, 321.7 mmol) in 1- butanol (1 L) was added hydrazine monohydrate (150 mL, 3.2 mol) , and the mixture was refluxed for 4 h. The mixture was cooled to room temperature and concentrated. The precipitate was successively washed on filter with water (2x) and Et2<0 (2x) and dried in vacuo overnight to give compound 5 (44 g, 88%) as a yellow solid. 1H NMR (DMSO-d6, 300 MHz): δ 5.53 (s, 2H); 7.94 (dd, IH); 8.35 (dd, IH); 12.02 (s, IH). [0091] The following compounds were made according to Scheme II
Figure imgf000038_0001
Figure imgf000039_0001
[0092] The following compounds were made according to Scheme I
Figure imgf000039_0002
Figure imgf000040_0001
Figure imgf000041_0001
Figure imgf000042_0001
Figure imgf000043_0001
[0093] The following compounds were made according to Scheme III:
Figure imgf000044_0001
Figure imgf000045_0001
[0094] The following compounds were made according to Scheme I
Figure imgf000046_0002
[0095] The following compound was made according to methods described in WO 2004/013140.
Figure imgf000046_0001
[0096] Compounds of this invention may be tested according to the methods described in WO2004/013140 and WO2002/022607, incorporated herein by reference. [0097] While we have described a number of embodiments of this invention, it is apparent that our basic examples may be altered to provide other embodiments which utilize the compounds and methods of this invention. Therefore, it will be appreciated that the scope of this invention is to be defined by the appended claims rather than by the specific embodiments which have been represented by way of example.

Claims

CLAIMS We claim:
1. A process for preparing a compound of formula 5:
Figure imgf000048_0001
5 comprising the step of selectively de-chlorinating a compound of formula 1 :
Figure imgf000048_0002
1 under suitable de-chlorination conditions to form a compound of formula 2 :
Figure imgf000048_0003
2. The process of claim 1, further comprising the step of treating the compound of formula 2 with suitable amide formation conditions to form a compound of formula 3:
Figure imgf000048_0004
3. The process of claim 2, further comprising the step of reducing the compound of formula 3 under suitable reduction conditions to form a compound of formula 4 :
Figure imgf000049_0001
4. The process of claim 3, further comprising the step of cyclizing a compound of formula 4 with H2NNH2-H2O under suitable cyclization conditions to form the compound of formula 5.
5. The process of any one of claims 1-4, wherein the dechlorination conditions comprise adding a palladium catalyst, a suitable base, and a suitable acid.
6. The process of claim 5, wherein said palladium catalyst is selected from Pd(OAc)2 or PPh3, said base is Et3N, and said acid is formic acid.
7. The process of claim 5 or claim 6, wherein said dechlorination reduction is done at a temperature below 60° C.
8. The process of claim 7, wherein said de-chlorination reaction is done at a temperature of about 50° C.
9. The process of any one of claims 1-8, wherein the dechlorination reaction is done in DMF.
10. The process of claim 9, wherein the reaction is cooled to about 0° C upon completion and mixed with water.
11. The process of claim 10, wherein said mixture is filtered through celite.
12. The process of any one of claims 1-11, wherein the amide formation condition comprises the following two steps:
(a) formation of an acid chloride from the carboxylic acid of formula 2 ;
(b) reaction of the acid chloride with ammonia.
13. The process of claim 12, wherein the carboxylic acid is combined with a chlorinating agent selected from oxalyl chloride or thionyl chloride in the presence of DMF or DCM.
14. The process of claim 12 or 13, wherein ammonia is bubbled into a solution of the acid chloride in an aprotic solvent.
15. The process of any one of claims 1-14, wherein the reduction conditions comprise adding TFAA dropwise to a cooled suspension of the amide in the presence of base and solvent.
16. The process of any one of claims 1-15, wherein the cyclization conditions are selected from heating the starting material with hydrazine monohydrate in the presence of butanol until completion.
17. A process for preparing a compound of formula I:
Figure imgf000050_0001
I wherein
Z2 is N or CRZ; Rx is T^R3; Rγ is T2-R10; or
Rx and Rγ are taken together with their intervening atoms to form a fused aromatic or non-aromatic 5-8 membered ring having 0-3 ring heteroatoms selected from oxygen, sulfur, or nitrogen, wherein any substitutable carbon on said fused ring formed by Rx and Rγ is substituted by T-R , and any substitutable nitrogen on said ring formed by Rx and Rγ is substituted by R4;
Rz is H, halo, or Ci-6 aliphatic, wherein the aliphatic is optionally substituted with 1-5 groups selected from halo, -CN, and -OR; each T and T1 is independently a bond or a Ci_4 alkylidene chain;
T2 is independently a bond or a Ci_4 alkylidene chain wherein up to three methylene units of the alkylidene chain are optionally replaced by -O-, -C(=O)-, -S(O)-, -S (O) 2-> "S-, or -N(R4)-;
Ring D is a 4-7 membered monocyclic ring or 8-10 membered bicyclic ring selected from a heterocyclyl, aryl, heteroaryl, or carbocyclyl ring; said heterocyclyl or heteroaryl ring having 1-4 ring heteroatoms selected from nitrogen, oxygen or sulfur, wherein each substitutable ring carbon of Ring D is independently substituted with oxo, R1, or -R5 and any substitutable ring nitrogen is independently substituted with -R4;
R1 is selected from -halo, -CN, -NO2, T-V-R6, phenyl, 5-6 membered heteroaryl ring, 5-6 membered heterocyclyl ring, or Ci-6 aliphatic group, said phenyl, heteroaryl, and heterocyclyl rings each optionally substituted by up to three groups independently selected from halo, oxo, or -R8, said Ci-6 aliphatic group optionally substituted with halo, cyano, nitro, or oxygen, or R1 and an adjacent substituent taken together with their intervening atoms form said ring fused to Ring D;
V is -0-, -S-, -SO-, -SO2-, -N(R6) SO2-, -SO2N(R6)-, -N(R6)-, -CO-, -CO2-, -N (R6) CO-, -N (R6) C (O)O-, -N (R6) CON (R6) -, -N(R6) SO2N(R6) -, -N(R6)N(R6) -, -C(O)N(R6)-, -OC(O)N(R6)-, -C(R6)2O-, -C(R6)2S-, -C(R6)2SO-, -C(R6)2SO2-, -C (R6) 2SO2N (R6) -, -C(R6)2N(R6)-, -C (R6) 2N (R6) C(O)-, -C (R6) 2N (R6) C (0) 0-, - C (R6)=NN(R6) -, -C(R6)=N-0-, -C (R6) 2N (R6) N (R6) -, -C(R6)2N(R6) SO2N(R6) -, or -C (R6) 2N (R6) CON (R6) - ; each R3 and R10 is independently selected from -R, -halo, -OR, - C(=O)R, -CO2R, -COCOR, -COCH2COR, -NO2, -CN, -S(O)R, -S(O)2R, - SR, -N (R4) 2, -CON (R7) 2, -SO2N (R7) 2, -OC (=0) R, -N (R7) COR, -N (R7) CO2R", -N (R4) N (R4) 2, -N (R7) CON (R7) 2, -N (R7) SO2N (R7) 2, -N (R4) SO2R, or -OC (=0) N (R7) 2; each R is independently selected from hydrogen or an optionally substituted group selected from Ci_6 aliphatic, C6-io aryl, a heteroaryl ring having 5-10 ring atoms, or a heterocyclyl ring having 4-10 ring atoms; each R is optionally substituted with 0-5 R9 or J; each R4 is independently selected from -R7, -COR7, -CO2R",
-CON (R7) 2, or -SO2R7, or two R4 on the same nitrogen are taken together to form a 3-8 membered heterocyclyl or heteroaryl ring; wherein said heterocyclyl or heteroaryl ring is optionally substituted by 0-3 J4; each R5 is independently selected from -R, halo, -OR, -C(=O)R, -CO2R, -COCOR, -NO2, -CN, -S(O)R, -SO2R, -SR, -N(R4)2, -CON (R4) 2, -SO2N (R4) 2, -OC (=0) R, -N (R4) COR, -N (R4) CO2R", -N(R4)N(R4)2, -C (=NH)N(R4)2, -C (=NH) -OR, -N (R4) CON (R4) 2, -N(R4) SO2N (R4) 2, -N (R4) SO2R, or -OC (=0) N (R4) 2; each R6 is independently selected from hydrogen or Ci_4 aliphatic group optionally substituted with 0-3 J6; or two R6 groups on the same nitrogen atom are taken together with the nitrogen atom to form a 5-6 membered heterocyclyl or heteroaryl ring, wherein said heterocyclyl or heteroaryl ring is optionally substituted with 0-4 J6; each R7 is independently selected from hydrogen or R"; or two R7 on the same nitrogen are taken together with the nitrogen to form a 5-8 membered heterocyclyl or heteroaryl ring, wherein said heterocyclyl or heteroaryl ring is optionally substituted with 0-4 j"; each R8 is independently selected from -OR6, -SR6, -COR6, -SO2R6, -N (R6) 2, -N(R6)N(R6)2, -CN, -NO2, -CON (R6) 2, -CO2R6, or a Ci_4 aliphatic group, wherein said Ci_4 aliphatic group is optionally substituted with 0-3 J8; each R9 is -R', -halo, -OR', -C(=O)R', -CO2R', -COCOR',
COCH2COR', -NO2, -CN, -S(O)R', -S(O)2R', -SR', -N (R') 2, -CON (R') 2, -SO2N (R') 2, -OC (=0) R', -N (R' ) COR' , -N(RMCO2(C1-S aliphatic), -N (R' ) N (R' ) 2, -N (R' ) CON (R' ) 2, -N (R' ) SO2N (R' ) 2, -N (R') SO2R', -OC (=0) N (R' ) 2, =NN(R')2, =N-0R' , or =0; each R' is independently hydrogen or a Ci-6 aliphatic group optionally substituted with 0-4 J' ; or two R' , together with the atom(s) to which they are attached, form a 3-6 membered carbocyclyl or heterocyclyl wherein said carbocyclyl or heterocyclyl is optionally substituted with 0-4 J' and wherein said heterocyclyl contains 1-2 heteroatoms selected from 0, N, or S; each R" is independently Ci-6 aliphatic optionally substituted with 0-4 J"; and each J4, J', and J" is independently NH2, NH (d-4aliphatic) , N (Ci-4aliphatic) 2, halogen, Ci-4aliphatic, OH,
0 (Ci-4aliphatic) , NO2, CN, CO2H, CO2 (Ci_4aliphatic) , 0 (haloCi-4 aliphatic) , or haloCi_4aliphatic; each J is halo, OH, or Ci-βaliphatic; each J6 and J8 is independently -halo, -OR, oxo, Ci-6 aliphatic, -C(=O)R, -CO2R, -COCOR, COCH2COR, -NO2, -CN, -S(O)R, -S(O)2R, -SR, -N(R4)2, -CON(R7)2, -SO2N(R7)2, -OC (=0) R, -N (R7) COR, -N (R7) CO2 (Ci-6 aliphatic) , -N (R4) N (R4) 2, =NN(R4)2, =N-0R, -N (R7) CON (R7) 2, -N (R7) SO2N (R7) 2, -N (R4) SO2R, or -OC (=0) N (R7) 2; or 2 J6 or J8 groups, on the same atom or on different atoms, together with the atom(s) to which they are bound, form a 3-8 membered saturated, partially saturated, or unsaturated ring having 0-2 heteroatoms selected from 0, N, or S;
comprising the step of synthesizing a compound of formula 5
Figure imgf000054_0001
5 according to the process of any one of claims 1-16;
and combining said compound with a compound of formula 6:
Figure imgf000054_0002
6; wherein LG is a suitable leaving group; and Rx, Rγ, Z2, and Ring D are as defined herein for compounds of formula I; under suitable reaction conditions to form a compound of formula I .
18. The process of claim 17, wherein said Ring D has one or two ortho substituents independently selected from -R1, any substitutable non-ortho carbon position on Ring D is independently substituted by -R5.
19. The compound of claim 17 or claim 18, wherein said compound is selected from one of the following formulae:
Figure imgf000055_0001
20. The process of any one of claims 17-19, wherein LG is F, Cl, Br, I, Cβarylsulfonyloxy, d-4alkylsulfonyloxy, trifluoromethane-sulfonyloxy, Ci-βalkylsulfonyl, or Ci-βalkyl sufoxide .
21. The process of claim 20, wherein LG is halo.
22. The process of claim 21, wherein LG is chloro.
23. The process of any one of claims 17-22, wherein Ring D is a 5-10 membered cycloaliphatic or a 5-10 membered heterocyclyl where said heterocyclyl contains 1-2 heteroatoms selected from O, N, or S; wherein the cycloaliphatic or heterocyclyl is optionally substituted with 1-5 -R5.
24. The process of claim 23, wherein Ring D is a 5-10 membered cycloaliphatic .
25. The process of claim 24, wherein Ring D is cyclohexyl.
26. The process of any one of claims 17-22, wherein Ring D is a 5-7 membered monocyclic aryl or heteroaryl ring, said heteroaryl ring having 1-4 ring heteroatoms selected from nitrogen, oxygen or sulfur.
27. The process of claim 26, wherein Ring D is phenyl or pyridinyl .
28. The process of claim 27, wherein Ring D is phenyl.
29. The process of any one of claims 26-28, wherein Ring D has one or two ortho substituents independently selected from -R1; and any substitutable non-ortho carbon position on Ring D is independently substituted with -R5.
30. The process of claim 29, wherein Ring D has one ortho substituent selected from -R1.
31. The process of claim 29 or claim 30, wherein R1 is -halo, -CN, or a Ci_4 aliphatic group optionally substituted with halogen .
32. The process of claim 31, wherein R1 is Cl and R5 is hydrogen .
33. The process of any one of claims 17-32, wherein Rx is hydrogen, d-4aliphatic, or halo.
34. The process of claim 33, wherein Rx is methyl.
35. The process of any one of claims 17-34, wherein Rγ is Ci_4 alkyl.
36. The process of claim 35, wherein Rγ is methyl.
37. The process of any one of claims 17-34, wherein Rγ is
Figure imgf000057_0001
1.
38. The process of claim 17, wherein Rx is hydrogen or Ci_4aliphatic;
A
Rγ is I—' (J)o-6 ; Ci-4 alkyl optionally substituted with 0-2 J; or a 6 membered heterocyclyl containing 1-2 heteroatoms selected from O, N, or S;
J is halo, OH, or Ci-4aliρhatic;
Ring D is phenyl, C3-10 cycloalkyl, or 5-7 membered heterocyclyl containing 1-2 heteroatoms selected from 0, N, or S; and
R1 is Ci_4alkyl, CF3, or halo.
39. The process of claim 17, wherein Rx is hydrogen, methyl, or ethyl;
R is HO
Figure imgf000057_0002
, I—I , methyl, CF3, Cl, morpholinyl, or C(CH3)2OH; Ring D is phenyl, tetrahydro-2H-pyran, adamantyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl; R1 is methyl, CF3, or halo; and R5 is H.
40. The process of claim 17, wherein
Rx is hydrogen or methyl;
Rγ is methyl;
Ring D is phenyl or cyclohexyl;
R1 is methyl, CF3, or Cl; and
R5 is H.
41. The process of claim 17, wherein said compound is selected from the following:
Figure imgf000058_0001
Figure imgf000058_0002
Figure imgf000059_0001
Figure imgf000059_0002
Figure imgf000059_0003
Figure imgf000060_0001
Figure imgf000060_0002
Figure imgf000060_0003
Figure imgf000061_0001
PCT/US2008/071714 2007-07-31 2008-07-31 Process for preparing 5-fluoro-1h-pyrazolo [3, 4-b] pyridin-3-amine and derivatives thereof WO2009018415A1 (en)

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