WO2008128231A1 - Pyrimidine derivatives - Google Patents
Pyrimidine derivatives Download PDFInfo
- Publication number
- WO2008128231A1 WO2008128231A1 PCT/US2008/060366 US2008060366W WO2008128231A1 WO 2008128231 A1 WO2008128231 A1 WO 2008128231A1 US 2008060366 W US2008060366 W US 2008060366W WO 2008128231 A1 WO2008128231 A1 WO 2008128231A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- heteroaryl
- aryl
- methyl
- alkyl
- indol
- Prior art date
Links
- 150000003230 pyrimidines Chemical class 0.000 title abstract description 14
- 229940083082 pyrimidine derivative acting on arteriolar smooth muscle Drugs 0.000 title description 2
- 150000001875 compounds Chemical class 0.000 claims abstract description 69
- 238000000034 method Methods 0.000 claims abstract description 26
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims abstract description 16
- 230000033115 angiogenesis Effects 0.000 claims abstract description 13
- 206010028980 Neoplasm Diseases 0.000 claims abstract description 7
- 201000011510 cancer Diseases 0.000 claims abstract description 7
- 206010064930 age-related macular degeneration Diseases 0.000 claims abstract description 5
- 208000002780 macular degeneration Diseases 0.000 claims abstract description 5
- -1 cyano, hydroxyl Chemical group 0.000 claims description 92
- 125000003118 aryl group Chemical group 0.000 claims description 43
- 125000001072 heteroaryl group Chemical group 0.000 claims description 41
- 125000000217 alkyl group Chemical group 0.000 claims description 37
- 125000000592 heterocycloalkyl group Chemical group 0.000 claims description 33
- 125000000753 cycloalkyl group Chemical group 0.000 claims description 32
- 125000003342 alkenyl group Chemical group 0.000 claims description 27
- 125000000304 alkynyl group Chemical group 0.000 claims description 27
- 125000004453 alkoxycarbonyl group Chemical group 0.000 claims description 20
- 125000004448 alkyl carbonyl group Chemical group 0.000 claims description 20
- 125000003545 alkoxy group Chemical group 0.000 claims description 19
- 125000004397 aminosulfonyl group Chemical group NS(=O)(=O)* 0.000 claims description 15
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 claims description 15
- 102000016549 Vascular Endothelial Growth Factor Receptor-2 Human genes 0.000 claims description 13
- 108010053099 Vascular Endothelial Growth Factor Receptor-2 Proteins 0.000 claims description 13
- 229910052760 oxygen Inorganic materials 0.000 claims description 13
- 125000004414 alkyl thio group Chemical group 0.000 claims description 9
- 230000000694 effects Effects 0.000 claims description 9
- 125000003917 carbamoyl group Chemical group [H]N([H])C(*)=O 0.000 claims description 7
- 125000000472 sulfonyl group Chemical group *S(*)(=O)=O 0.000 claims description 7
- 230000002401 inhibitory effect Effects 0.000 claims description 6
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 6
- 229910052717 sulfur Inorganic materials 0.000 claims description 6
- 125000001041 indolyl group Chemical group 0.000 claims description 5
- 125000004541 benzoxazolyl group Chemical group O1C(=NC2=C1C=CC=C2)* 0.000 claims description 4
- 229910052736 halogen Inorganic materials 0.000 claims description 4
- 150000002367 halogens Chemical class 0.000 claims description 4
- 125000003453 indazolyl group Chemical group N1N=C(C2=C1C=CC=C2)* 0.000 claims description 4
- 102000005962 receptors Human genes 0.000 claims description 4
- 108020003175 receptors Proteins 0.000 claims description 4
- 206010025421 Macule Diseases 0.000 claims description 2
- 125000004104 aryloxy group Chemical group 0.000 claims description 2
- 230000007850 degeneration Effects 0.000 claims description 2
- 125000000449 nitro group Chemical group [O-][N+](*)=O 0.000 claims description 2
- 125000001475 halogen functional group Chemical group 0.000 claims 8
- 125000004356 hydroxy functional group Chemical group O* 0.000 claims 3
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 description 36
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 34
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 30
- YAAWASYJIRZXSZ-UHFFFAOYSA-N pyrimidine-2,4-diamine Chemical compound NC1=CC=NC(N)=N1 YAAWASYJIRZXSZ-UHFFFAOYSA-N 0.000 description 28
- 239000000243 solution Substances 0.000 description 26
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 23
- 238000003786 synthesis reaction Methods 0.000 description 19
- 239000000203 mixture Substances 0.000 description 18
- 239000011541 reaction mixture Substances 0.000 description 17
- 238000004440 column chromatography Methods 0.000 description 16
- KXDAEFPNCMNJSK-UHFFFAOYSA-N Benzamide Chemical compound NC(=O)C1=CC=CC=C1 KXDAEFPNCMNJSK-UHFFFAOYSA-N 0.000 description 14
- 239000007832 Na2SO4 Substances 0.000 description 14
- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 14
- 239000012044 organic layer Substances 0.000 description 14
- 229910052938 sodium sulfate Inorganic materials 0.000 description 14
- 238000005160 1H NMR spectroscopy Methods 0.000 description 13
- 235000019439 ethyl acetate Nutrition 0.000 description 13
- 230000015572 biosynthetic process Effects 0.000 description 12
- 208000035475 disorder Diseases 0.000 description 12
- LJXQPZWIHJMPQQ-UHFFFAOYSA-N pyrimidin-2-amine Chemical compound NC1=NC=CC=N1 LJXQPZWIHJMPQQ-UHFFFAOYSA-N 0.000 description 12
- 239000002904 solvent Substances 0.000 description 12
- ZMANZCXQSJIPKH-UHFFFAOYSA-N Triethylamine Chemical compound CCN(CC)CC ZMANZCXQSJIPKH-UHFFFAOYSA-N 0.000 description 10
- 239000003921 oil Substances 0.000 description 10
- 235000019198 oils Nutrition 0.000 description 10
- 239000012267 brine Substances 0.000 description 9
- HNQIVZYLYMDVSB-NJFSPNSNSA-N methanesulfonamide Chemical compound [14CH3]S(N)(=O)=O HNQIVZYLYMDVSB-NJFSPNSNSA-N 0.000 description 9
- HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical compound O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 9
- OKKJLVBELUTLKV-MZCSYVLQSA-N Deuterated methanol Chemical compound [2H]OC([2H])([2H])[2H] OKKJLVBELUTLKV-MZCSYVLQSA-N 0.000 description 8
- IAZDPXIOMUYVGZ-WFGJKAKNSA-N Dimethyl sulfoxide Chemical compound [2H]C([2H])([2H])S(=O)C([2H])([2H])[2H] IAZDPXIOMUYVGZ-WFGJKAKNSA-N 0.000 description 8
- 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 description 8
- OKKJLVBELUTLKV-UHFFFAOYSA-N methanol Natural products OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 8
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 7
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 7
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 7
- 125000000951 phenoxy group Chemical group [H]C1=C([H])C([H])=C(O*)C([H])=C1[H] 0.000 description 7
- BTTNYQZNBZNDOR-UHFFFAOYSA-N 2,4-dichloropyrimidine Chemical compound ClC1=CC=NC(Cl)=N1 BTTNYQZNBZNDOR-UHFFFAOYSA-N 0.000 description 6
- FJNLCHNQVJVCPY-UHFFFAOYSA-N 2-n-methoxy-2-n-methyl-4-n,6-n-dipropyl-1,3,5-triazine-2,4,6-triamine Chemical compound CCCNC1=NC(NCCC)=NC(N(C)OC)=N1 FJNLCHNQVJVCPY-UHFFFAOYSA-N 0.000 description 6
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 6
- 239000004480 active ingredient Substances 0.000 description 6
- JFDZBHWFFUWGJE-UHFFFAOYSA-N benzonitrile Chemical compound N#CC1=CC=CC=C1 JFDZBHWFFUWGJE-UHFFFAOYSA-N 0.000 description 6
- ZYGHJZDHTFUPRJ-UHFFFAOYSA-N coumarin Chemical compound C1=CC=C2OC(=O)C=CC2=C1 ZYGHJZDHTFUPRJ-UHFFFAOYSA-N 0.000 description 6
- BWHMMNNQKKPAPP-UHFFFAOYSA-L potassium carbonate Chemical compound [K+].[K+].[O-]C([O-])=O BWHMMNNQKKPAPP-UHFFFAOYSA-L 0.000 description 6
- XFGZNHJFHCZABE-UHFFFAOYSA-N 2-n-(3-methoxyphenyl)-4-n-(2-methyl-1h-indol-5-yl)pyrimidine-2,4-diamine Chemical compound COC1=CC=CC(NC=2N=C(NC=3C=C4C=C(C)NC4=CC=3)C=CN=2)=C1 XFGZNHJFHCZABE-UHFFFAOYSA-N 0.000 description 5
- 239000003153 chemical reaction reagent Substances 0.000 description 5
- 125000005843 halogen group Chemical group 0.000 description 5
- 108090000765 processed proteins & peptides Proteins 0.000 description 5
- 238000012360 testing method Methods 0.000 description 5
- QUZSVLHBRFOBIS-UHFFFAOYSA-N 3-[[4-[(2-methyl-1h-indol-5-yl)amino]pyrimidin-2-yl]amino]benzonitrile Chemical compound C=1C=C2NC(C)=CC2=CC=1NC(N=1)=CC=NC=1NC1=CC=CC(C#N)=C1 QUZSVLHBRFOBIS-UHFFFAOYSA-N 0.000 description 4
- XORJNMVOGJUPIA-UHFFFAOYSA-N 3-[[4-[(2-methyl-1h-indol-5-yl)amino]pyrimidin-2-yl]amino]phenol Chemical compound C=1C=C2NC(C)=CC2=CC=1NC(N=1)=CC=NC=1NC1=CC=CC(O)=C1 XORJNMVOGJUPIA-UHFFFAOYSA-N 0.000 description 4
- ISLWMDQUNYFJOG-UHFFFAOYSA-N 5-[2-(3-methoxyphenoxy)pyrimidin-4-yl]oxy-2-methyl-1h-indole Chemical compound COC1=CC=CC(OC=2N=C(OC=3C=C4C=C(C)NC4=CC=3)C=CN=2)=C1 ISLWMDQUNYFJOG-UHFFFAOYSA-N 0.000 description 4
- DLFVBJFMPXGRIB-UHFFFAOYSA-N Acetamide Chemical compound CC(N)=O DLFVBJFMPXGRIB-UHFFFAOYSA-N 0.000 description 4
- 108091000080 Phosphotransferase Proteins 0.000 description 4
- 125000002490 anilino group Chemical group [H]N(*)C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 4
- 210000004204 blood vessel Anatomy 0.000 description 4
- 239000000969 carrier Substances 0.000 description 4
- 239000002270 dispersing agent Substances 0.000 description 4
- 230000005764 inhibitory process Effects 0.000 description 4
- HQKMJHAJHXVSDF-UHFFFAOYSA-L magnesium stearate Chemical compound [Mg+2].CCCCCCCCCCCCCCCCCC([O-])=O.CCCCCCCCCCCCCCCCCC([O-])=O HQKMJHAJHXVSDF-UHFFFAOYSA-L 0.000 description 4
- 102000020233 phosphotransferase Human genes 0.000 description 4
- 125000004482 piperidin-4-yl group Chemical group N1CCC(CC1)* 0.000 description 4
- 125000002572 propoxy group Chemical group [*]OC([H])([H])C(C([H])([H])[H])([H])[H] 0.000 description 4
- DHYLZDVDOQLEAQ-UHFFFAOYSA-N 2-O-methylcytosine Chemical compound COC1=NC=CC(N)=N1 DHYLZDVDOQLEAQ-UHFFFAOYSA-N 0.000 description 3
- JQULCCZIXYRBSE-UHFFFAOYSA-N 2-methyl-1h-indol-5-amine Chemical compound NC1=CC=C2NC(C)=CC2=C1 JQULCCZIXYRBSE-UHFFFAOYSA-N 0.000 description 3
- XWQVQSXLXAXOPJ-QNGMFEMESA-N 4-[[[6-[5-chloro-2-[[4-[[(2r)-1-methoxypropan-2-yl]amino]cyclohexyl]amino]pyridin-4-yl]pyridin-2-yl]amino]methyl]oxane-4-carbonitrile Chemical compound C1CC(N[C@H](C)COC)CCC1NC1=CC(C=2N=C(NCC3(CCOCC3)C#N)C=CC=2)=C(Cl)C=N1 XWQVQSXLXAXOPJ-QNGMFEMESA-N 0.000 description 3
- 235000019489 Almond oil Nutrition 0.000 description 3
- WVDDGKGOMKODPV-UHFFFAOYSA-N Benzyl alcohol Chemical compound OCC1=CC=CC=C1 WVDDGKGOMKODPV-UHFFFAOYSA-N 0.000 description 3
- 108010073929 Vascular Endothelial Growth Factor A Proteins 0.000 description 3
- 102000005789 Vascular Endothelial Growth Factors Human genes 0.000 description 3
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- 229910052799 carbon Inorganic materials 0.000 description 3
- 229960000956 coumarin Drugs 0.000 description 3
- 235000001671 coumarin Nutrition 0.000 description 3
- 239000006071 cream Substances 0.000 description 3
- 239000003085 diluting agent Substances 0.000 description 3
- GNBHRKFJIUUOQI-UHFFFAOYSA-N fluorescein Chemical compound O1C(=O)C2=CC=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 GNBHRKFJIUUOQI-UHFFFAOYSA-N 0.000 description 3
- 125000002887 hydroxy group Chemical group [H]O* 0.000 description 3
- NCBZRJODKRCREW-UHFFFAOYSA-N m-anisidine Chemical compound COC1=CC=CC(N)=C1 NCBZRJODKRCREW-UHFFFAOYSA-N 0.000 description 3
- 239000002480 mineral oil Substances 0.000 description 3
- QITURVRMELDXGW-UHFFFAOYSA-N n-(2-chloro-5-fluoropyrimidin-4-yl)-2-methyl-1h-indol-5-amine Chemical compound C=1C=C2NC(C)=CC2=CC=1NC1=NC(Cl)=NC=C1F QITURVRMELDXGW-UHFFFAOYSA-N 0.000 description 3
- OIWHDTCKVAMARO-UHFFFAOYSA-N n-(2-chloropyrimidin-4-yl)-1h-indazol-5-amine Chemical compound ClC1=NC=CC(NC=2C=C3C=NNC3=CC=2)=N1 OIWHDTCKVAMARO-UHFFFAOYSA-N 0.000 description 3
- LULFHBSJQJYTPJ-UHFFFAOYSA-N n-[2-(4-fluorophenoxy)pyrimidin-4-yl]-2-methyl-1h-indol-5-amine Chemical compound C=1C=C2NC(C)=CC2=CC=1NC(N=1)=CC=NC=1OC1=CC=C(F)C=C1 LULFHBSJQJYTPJ-UHFFFAOYSA-N 0.000 description 3
- 229910052757 nitrogen Inorganic materials 0.000 description 3
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- 239000012188 paraffin wax Substances 0.000 description 3
- 229910000027 potassium carbonate Inorganic materials 0.000 description 3
- XVIAPHVAGFEFFN-UHFFFAOYSA-N pyrimidine-5-carbonitrile Chemical compound N#CC1=CN=CN=C1 XVIAPHVAGFEFFN-UHFFFAOYSA-N 0.000 description 3
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- 239000003826 tablet Substances 0.000 description 3
- PUPZLCDOIYMWBV-UHFFFAOYSA-N (+/-)-1,3-Butanediol Chemical compound CC(O)CCO PUPZLCDOIYMWBV-UHFFFAOYSA-N 0.000 description 2
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- WHPFEQUEHBULBW-UHFFFAOYSA-N 2,4-dichloro-5-fluoropyrimidine Chemical compound FC1=CN=C(Cl)N=C1Cl WHPFEQUEHBULBW-UHFFFAOYSA-N 0.000 description 2
- NHOQNGWUBODVRM-UHFFFAOYSA-N 2-(3-methoxyanilino)-6-oxo-1h-pyrimidine-5-carbonitrile Chemical compound COC1=CC=CC(NC=2N=C(O)C(C#N)=CN=2)=C1 NHOQNGWUBODVRM-UHFFFAOYSA-N 0.000 description 2
- LPBDZVNGCNTELM-UHFFFAOYSA-N 2-chloropyrimidin-4-amine Chemical compound NC1=CC=NC(Cl)=N1 LPBDZVNGCNTELM-UHFFFAOYSA-N 0.000 description 2
- XTLKENCFQIAAJK-UHFFFAOYSA-N 2-methylsulfanyl-6-oxo-1h-pyrimidine-5-carbonitrile Chemical compound CSC1=NC=C(C#N)C(=O)N1 XTLKENCFQIAAJK-UHFFFAOYSA-N 0.000 description 2
- 125000004105 2-pyridyl group Chemical group N1=C([*])C([H])=C([H])C([H])=C1[H] 0.000 description 2
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Definitions
- Angiogenesis is a physiological process of growing new blood vessels from pre-existing vessels. It takes place in a healthy subject to heal wounds, i.e., restoring blood flow to tissues after injury or insult. Excessive blood vessel growth may be triggered by certain pathological conditions such as cancer, age-related macular degeneration, rheumatoid arthritis, and psoriasis. As a result, new blood vessels feed diseased tissues and destroy normal tissues. In cancer, new blood vessels also allow tumor cells to escape into the circulation and lodge in other organs.
- VEGF vascular endothelial growth factor
- KDR kinase insert domain receptor
- KDR inhibitors are therefore potential candidates for treating angiogenesis-related diseases.
- This invention is based on the discovery that a number of pyrimidine compounds inhibit the activity of KDR.
- One aspect of this invention features pyrimidine compounds of the following formula (I):
- each of X and Y independently, is O, S, or NR, wherein R is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl, alkylcarbonyl, alkoxycarbonyl, aminocarbonyl, or aminosulfonyl; Z is CR' or N, wherein R' is H, halo, nitro, cyano, hydroxyl, alkoxy, aryloxy, alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
- V, U, and T together represent , * 5 Vs " - """ OV, nitro, amino, cyano, hydroxy, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl, alkoxy, alkylthio, alkylcarbonyl, carboxy, alkoxycarbonyl, carbonylamino, sulfonylamino, aminocarbonyl, or aminosulfonyl; R 5 is alkyl, cycloalkyl, heterocycloalkyl, aryl or heteroaryl; and R 7 is alkyl.
- R 1 , R 2 , R3, and R 4 is H and R5 is aryl or heteroaryl, optionally substituted with halo, nitro, amino, cyano, hydroxy, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl, alkoxy, alkylthio, alkylcarbonyl, carboxy, alkoxycarbonyl, sulfonyl, carbonylamino, sulfonylamino, aminocarbonyl, or aminosulfonyl.
- alkyl herein refers to a straight or branched hydrocarbon, containing 1-10 carbon atoms.
- alkyl groups include, but are not limited to, methyl, ethyl, n-propyl, /-propyl, n-butyl, /-butyl, and /-butyl.
- alkoxy refers to an -O-alkyl.
- aryl refers to a 6-carbon monocyclic, 10-carbon bicyclic, 14- carbon tricyclic aromatic ring system wherein each ring may have 1 to 4 substituents.
- aryl groups include, but are not limited to, phenyl, naphthyl, and anthracenyl.
- cycloalkyl refers to a saturated and partially unsaturated cyclic hydrocarbon group having 3 to 12 carbons.
- examples of cycloalkyl groups include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, cycloheptyl, and cyclooctyl.
- heteroaryl refers to an aromatic 5-8 membered monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic ring system having one or more heteroatoms (such as O, N, or S).
- heteroaryl groups include pyridyl, furyl, imidazolyl, benzimidazolyl, pyrimidinyl, thienyl, quinolinyl, indolyl, and thiazolyl.
- heteroarylkyl refers to an alkyl group substituted with a heteroaryl group.
- heterocycloalkyl refers to a nonaromatic 5-8 membered monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic ring system having one or more heteroatoms (such as O, N, or S).
- heterocycloalkyl groups include, but are not limited to, piperazinyl, pyrrolidinyl, dioxanyl, morpholinyl, and tetrahydrofuranyl.
- Heterocycloalkyl can be a saccharide ring, e.g., glucosyl.
- Alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl, and alkoxy mentioned herein include both substituted and unsubstituted moieties.
- substituents include, but are not limited to, halo, hydroxyl, amino, cyano, nitro, mercapto, alkoxycarbonyl, amido, carboxy, alkanesulfonyl, alkylcarbonyl, carbamido, carbamyl, carboxyl, thioureido, thiocyanato, sulfonamido, alkyl, alkenyl, alkynyl, alkyloxy, aryl, heteroaryl, cycloalkyl, heterocycloalkyl, in which alkyl, alkenyl, alkynyl, alkyloxy, aryl, heteroaryl cycloalkyl, and heterocycloalkyl may further substituted.
- the pyrimidine compounds described above include their pharmaceutically acceptable salts, hydrate and prodrug, if applicable.
- Another aspect of this invention features a method of treating an angiogenesis-related disorder (e.g., cancer or age-related macula degeneration).
- the method includes administering to a subject having such an disorder an effective amount of one or more of the above-described pyrimidine compounds.
- Still another aspect of this invention features a method of inhibiting the activity of kinase insert domain receptor by contacting the receptor with an effective amount of a pyrimidine compound of formula (II):
- Ri is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, or heteroaryl
- each of R 2 and R 3 independently, is H, halogen, nitro, amino, CN, hydroxy, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl, alkoxy, alkylcarbonyl, carboxy, or alkoxycarbonyl
- each of X and Y independently, is O, S, Or NR 4 , wherein R 4 is H, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl, alkylcarbonyl, alkoxycarbonyl, aminocarbonyl, or aminosulfonyl
- Ar is aryl or heteroaryl.
- Ar is indolyl, indazolyl, benzoimidazolyl, or benzoxazolyl;
- X is O or NH and Y is NH;
- Ri is aryl or heteroaryl, optionally substituted with halo, nitro, amino, cyano, hydroxy, alkyl, alkenyl, alkynyl, aryl, cycloalkyl, heterocycloalkyl, heteroaryl, alkoxy, alkylthio, alkylcarbonyl, carboxy, alkoxycarbonyl, sulfonyl, carbonylamino, sulfonylamino, aminocarbonyl, or aminosulfonyl.
- Exemplary compounds 1-317 are shown in the Detailed Description section below.
- Yet another aspect of this invention features a method of inhibiting angiogenesis, or treating age-related macular degeneration, by administrating to a subject in need thereof an effective amount of a pyrimidine compound of formula (II) as described above.
- a composition containing one or more of the pyrimidine compounds described above and a pharmaceutically acceptable carrier for use in treating an angiogenesis-related disorder e.g., such cancer or age-related macular degeneration
- use of one or more of the pyrimidine compounds for the manufacture of a medicament for treating the disorder.
- the compounds described above can be synthesized from commercially available starting materials by methods well known in the art.
- leaving groups e.g., chloride, p-TsO, MeS, or MeSO 2
- N4-positions of a suitable pyrimidine compound with nucleophilic groups such as amino or hydroxyl via, e.g., Buchwald-Hartwig coupling reaction.
- the replacement can be first effected either at the N2 position or the N4 position.
- the compounds thus obtained can be further modified at their peripheral positions to provide the desired compounds.
- an effective amount of one or more of these compounds can be therefore used to inhibit angiogenesis and treat a subject having an angiogenesis-related disorder.
- an effective amount refers to the amount of a pyrimidine compound that is required to confer the intended effect in the subject. Effective amounts may vary, as recognized by those skilled in the art, depending on route of administration, excipient usage, and the possibility of co-usage with other agents.
- treating refers to administering one or more of the above-described pyrimidine compounds to a subject that has an angiogenesis-related disorder, or has a symptom of the disorder, or has a predisposition toward the disorder, with the purpose to cure, heal, alleviate, relieve, alter, remedy, ameliorate, improve, or affect the disorder, the symptoms of the disorder, or the predisposition toward the disorder.
- a composition having one or more of the pyrimidine compounds of this invention can be administered orally, parenterally, by inhalation spray, or via an implanted reservoir.
- parenteral as used herein includes subcutaneous, intracutaneous, intravenous, intramuscular, intraarticular, intraarterial, intrasynovial, intrasternal, intrathecal, intralesional and intracranial injection or infusion techniques.
- An oral composition can be any orally acceptable dosage form including, but not limited to, tablets, capsules, emulsions and aqueous suspensions, dispersions and solutions. Commonly used carriers for tablets include lactose and corn starch. Lubricating agents, such as magnesium stearate, are also typically added to tablets.
- useful diluents include lactose and dried corn starch.
- the active ingredient can be suspended or dissolved in an oily phase combined with emulsifying or suspending agents. If desired, certain sweetening, flavoring, or coloring agents can be added.
- a sterile injectable composition e.g., aqueous or oleaginous suspension
- suitable dispersing or wetting agents such as, for example, Tween 80
- the sterile injectable preparation can also be a sterile injectable solution or suspension in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3- butanediol.
- acceptable vehicles and solvents that can be employed are mannitol, water, Ringer's solution and isotonic sodium chloride solution.
- sterile, fixed oils are conventionally employed as a solvent or suspending medium (e.g., synthetic mono- or di-glycerides).
- Fatty acids such as oleic acid and its glyceride derivatives are useful in the preparation of injectables, as are natural pharmaceutically-acceptable oils, such as olive oil or castor oil, especially in their polyoxyethylated versions.
- oils such as olive oil or castor oil, especially in their polyoxyethylated versions.
- These oil solutions or suspensions can also contain a long-chain alcohol diluent or dispersant, or carboxymethyl cellulose or similar dispersing agents.
- An inhalation composition can be prepared according to techniques well known in the art of pharmaceutical formulation and can be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance bioavailability, fluorocarbons, and/or other solubilizing or dispersing agents known in the art.
- a topical composition can be formulated in form of oil, cream, lotion, ointment and the like.
- suitable carriers for the composition include vegetable or mineral oils, white petrolatum (white soft paraffin), branched chain fats or oils, animal fats and high molecular weight alcohols (greater than C 12).
- the preferred carriers are those in which the active ingredient is soluble.
- Emulsif ⁇ ers, stabilizers, humectants and antioxidants may also be included as well as agents imparting color or fragrance, if desired.
- transdermal penetration enhancers may be employed in these topical formulations. Examples of such enhancers can be found in U.S. Patents 3,989,816 and 4,444,762.
- Creams are preferably formulated from a mixture of mineral oil, self-emulsifying beeswax and water in which mixture the active ingredient, dissolved in a small amount of an oil, such as almond oil, is admixed.
- An example of such a cream is one which includes about 40 parts water, about 20 parts beeswax, about 40 parts mineral oil and about 1 part almond oil.
- Ointments may be formulated by mixing a solution of the active ingredient in a vegetable oil, such as almond oil, with warm soft paraffin and allowing the mixture to cool.
- An example of such an ointment is one which includes about 30% by weight almond and about 70% by weight white soft paraffin.
- a carrier in a pharmaceutical composition must be "acceptable” in the sense that it is compatible with active ingredients of the formulation (and preferably, capable of stabilizing it) and not deleterious to the subject to be treated.
- solubilizing agents such as cyclodextrins (which form specific, more soluble complexes with one or more of active pyrimidine compounds of the extract), can be utilized as pharmaceutical excipients for delivery of the active ingredients.
- examples of other carriers include colloidal silicon dioxide, magnesium stearate, cellulose, sodium lauryl sulfate, and D&C Yellow # 10.
- Suitable in vitro assays can be used to preliminarily evaluate the efficacy of the above-described pyrimidine compounds in inhibiting the activity of KDR or inhibiting the activity of VEGF.
- the compounds can further be examined for its efficacy in treating an angiogenesis-related disorder by in vivo assays.
- the compounds can be administered to an animal (e.g., a mouse model) having cancer and its therapeutic effects are then accessed. Based on the results, an appropriate dosage range and administration route can also be determined.
- N-(2-chloropyrimidin-4-yl)-2-methyl-lH-indol-5-amine(0.1 mmol) and aniline (0.1 mmol) were dissolved in 0.5ml DMF.
- p-TsOH monohydrate 0.2 mmol.
- the reaction mixture was stirred at 60 C for 5 hours, diluted with water, and extracted with ethyl acetate. The organic layer was washed with water and brine sequentially, dried over anhydrous Na 2 SO 4 , and concentrated. The resulting residue was purified by column chromatography to provide the title product in a yield of 85%.
- Example 2-283 Synthesis of Compounds 2-283 Compounds 2-283 were each synthesized in a manner similar to that described in Example 1.
- Example 307 Synthesis of N2-(3-ethynylphenyl)-N4-(2-methylbenzo[d]oxazol-6-yl) pyrimidine-2,4-diamine (Compound 307).
- Example 318 KDR kinase activity assay using Z'-lyte kinase assay kit
- Inhibition of kinase activity of a recombinant KDR catalytic domain was determined using Z'-LYTETM Tyrl Peptide assay kit (Invitrogen, Cat. PV3190) in a black 384-well plate (Thermo labsystems, Cambridge, U.K., Cat. 7805). The assay was performed according to the procedures recommended by the manufacturer.
- a test compound (10 mM stock in DMSO) was diluted to 1 :4 with distilled water containing 8% DMSO. The solution was placed in a test well and three control wells (Cl, C2, and C3) at 2.5 ⁇ l/well.
- Coumarin- fluorescein double-labeled peptide substrate was mixed with the KDR catalytic domain ("kinase"). 5 ⁇ l of the kinase/peptide mixture was added to each of the test, Cl, and C2 wells, but not C3 (Final concentration: 0.3 ⁇ g/ml of Kinase, 2 ⁇ M of peptide). 5 ⁇ l of Phosphor-Tyrl peptide was added to the C3 well.
- a development reagent was diluted to 1 : 128 according to the recommendation of the manufacturer. 5 ⁇ l of the diluted development reagent was added to each well. The plate was spun at 1000 rpm to settle all solution down to the wells, and then sealed and shaken at 250 rpm and 25 0 C for 1 hour.
- Cioo % Average Coumarin emission signal of the 100% Phos.
- Control Co% Average Coumarin emission signal of the 0% Phos.
- Control Fioo% Average Fluorescein emission signal of the 100% Phos.
- Control Fo% Average Fluorescein emission signal of the 0% Phos.
- the inhibition ratio was calculated as follows:
- Inhibition% (Phos. in C2 well - Phos. in test well)/ (Phos. in C2 well) x 100%
- the result showed that all of the tested compounds inhibited the activity of KDR.
- the IC 50 values ranged from 0.001 to 10 ⁇ M.
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NZ580671A NZ580671A (en) | 2007-04-16 | 2008-04-15 | Pyrimidine derivatives |
JP2010504191A JP5635398B2 (en) | 2007-04-16 | 2008-04-15 | Pyrimidine derivatives |
BRPI0809715-1A BRPI0809715A2 (en) | 2007-04-16 | 2008-04-15 | "compound, method of treating an angiogenesis-related disorder, method of inhibiting kinase insert domain receptor activity, method of angiogenesis inhibition, and method of treating macular degeneration" |
CA2684470A CA2684470C (en) | 2007-04-16 | 2008-04-15 | Pyrimidine derivatives |
ES08745881.6T ES2465673T3 (en) | 2007-04-16 | 2008-04-15 | Pyrimidine derivatives |
MX2009011199A MX2009011199A (en) | 2007-04-16 | 2008-04-15 | Pyrimidine derivatives. |
DK08745881.6T DK2154967T5 (en) | 2007-04-16 | 2008-04-15 | Pyriminderivater |
PL08745881T PL2154967T3 (en) | 2007-04-16 | 2008-04-15 | Pyrimidine derivatives |
EP08745881.6A EP2154967B9 (en) | 2007-04-16 | 2008-04-15 | Pyrimidine derivatives |
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Also Published As
Publication number | Publication date |
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EP2154967B9 (en) | 2014-07-23 |
DK2154967T3 (en) | 2014-04-07 |
MX2009011199A (en) | 2010-03-17 |
US20080255172A1 (en) | 2008-10-16 |
EP2154967B1 (en) | 2014-03-05 |
US8901143B2 (en) | 2014-12-02 |
EP2154967A1 (en) | 2010-02-24 |
US20130065890A1 (en) | 2013-03-14 |
HRP20140377T2 (en) | 2015-01-16 |
AU2008240084A1 (en) | 2008-10-23 |
DK2154967T5 (en) | 2014-11-17 |
BRPI0809715A2 (en) | 2019-11-05 |
JP2010524952A (en) | 2010-07-22 |
KR101424847B1 (en) | 2016-07-08 |
ES2465673T3 (en) | 2014-06-06 |
PT2154967E (en) | 2014-06-05 |
NZ580671A (en) | 2012-03-30 |
HRP20140377T1 (en) | 2014-05-23 |
JP5635398B2 (en) | 2014-12-03 |
ES2465673T9 (en) | 2014-11-14 |
EP2154967A4 (en) | 2010-05-19 |
PL2154967T3 (en) | 2014-08-29 |
CA2684470C (en) | 2016-02-09 |
TWI484960B (en) | 2015-05-21 |
TW200848049A (en) | 2008-12-16 |
RU2009141982A (en) | 2011-05-27 |
RU2455994C2 (en) | 2012-07-20 |
KR20100016592A (en) | 2010-02-12 |
CA2684470A1 (en) | 2008-10-23 |
SI2154967T1 (en) | 2014-06-30 |
US8349859B2 (en) | 2013-01-08 |
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