WO2008025886A1 - Metal chelates and chelating agents containing triazolyl subunits - Google Patents
Metal chelates and chelating agents containing triazolyl subunits Download PDFInfo
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- WO2008025886A1 WO2008025886A1 PCT/FI2007/050469 FI2007050469W WO2008025886A1 WO 2008025886 A1 WO2008025886 A1 WO 2008025886A1 FI 2007050469 W FI2007050469 W FI 2007050469W WO 2008025886 A1 WO2008025886 A1 WO 2008025886A1
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- chelating agent
- agent according
- tethered
- chelating
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- 239000002738 chelating agent Substances 0.000 title claims abstract description 72
- 229910052751 metal Inorganic materials 0.000 title abstract description 16
- 239000002184 metal Substances 0.000 title abstract description 16
- 125000001425 triazolyl group Chemical group 0.000 title 1
- 239000002245 particle Substances 0.000 claims abstract description 32
- 238000000034 method Methods 0.000 claims abstract description 15
- 238000002360 preparation method Methods 0.000 claims abstract description 6
- -1 dichlorotriazinyl Chemical group 0.000 claims description 46
- 238000003786 synthesis reaction Methods 0.000 claims description 46
- 230000015572 biosynthetic process Effects 0.000 claims description 44
- 239000013522 chelant Substances 0.000 claims description 33
- 108091034117 Oligonucleotide Proteins 0.000 claims description 30
- 125000005647 linker group Chemical group 0.000 claims description 25
- 125000003118 aryl group Chemical group 0.000 claims description 23
- 229910052747 lanthanoid Inorganic materials 0.000 claims description 23
- 150000002602 lanthanoids Chemical class 0.000 claims description 23
- 150000003852 triazoles Chemical class 0.000 claims description 22
- 238000006243 chemical reaction Methods 0.000 claims description 21
- 150000001875 compounds Chemical class 0.000 claims description 21
- 125000001183 hydrocarbyl group Chemical group 0.000 claims description 19
- 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 claims description 18
- 150000002148 esters Chemical class 0.000 claims description 17
- 102000015636 Oligopeptides Human genes 0.000 claims description 16
- 108010038807 Oligopeptides Proteins 0.000 claims description 16
- OGPBJKLSAFTDLK-UHFFFAOYSA-N europium atom Chemical compound [Eu] OGPBJKLSAFTDLK-UHFFFAOYSA-N 0.000 claims description 15
- 229910052693 Europium Inorganic materials 0.000 claims description 14
- QWENRTYMTSOGBR-UHFFFAOYSA-N 1H-1,2,3-Triazole Chemical compound C=1C=NNN=1 QWENRTYMTSOGBR-UHFFFAOYSA-N 0.000 claims description 13
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 claims description 13
- 150000001732 carboxylic acid derivatives Chemical class 0.000 claims description 13
- 229910021645 metal ion Inorganic materials 0.000 claims description 13
- 150000003254 radicals Chemical class 0.000 claims description 13
- 125000004432 carbon atom Chemical group C* 0.000 claims description 12
- JLCPHMBAVCMARE-UHFFFAOYSA-N [3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methyl [5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate Chemical class Cc1cn(C2CC(OP(O)(=O)OCC3OC(CC3OP(O)(=O)OCC3OC(CC3O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c3nc(N)[nH]c4=O)C(COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3COP(O)(=O)OC3CC(OC3CO)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cc(C)c(=O)[nH]c3=O)n3cc(C)c(=O)[nH]c3=O)n3ccc(N)nc3=O)n3cc(C)c(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)O2)c(=O)[nH]c1=O JLCPHMBAVCMARE-UHFFFAOYSA-N 0.000 claims description 11
- 239000002253 acid Substances 0.000 claims description 11
- 239000003795 chemical substances by application Substances 0.000 claims description 11
- 239000007790 solid phase Substances 0.000 claims description 11
- 125000000217 alkyl group Chemical group 0.000 claims description 10
- 125000002541 furyl group Chemical group 0.000 claims description 8
- 229910021644 lanthanide ion Inorganic materials 0.000 claims description 8
- 125000004430 oxygen atom Chemical group O* 0.000 claims description 8
- 125000006239 protecting group Chemical group 0.000 claims description 8
- 125000001544 thienyl group Chemical group 0.000 claims description 8
- RIOQSEWOXXDEQQ-UHFFFAOYSA-N triphenylphosphine Chemical compound C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1 RIOQSEWOXXDEQQ-UHFFFAOYSA-N 0.000 claims description 8
- 229910052692 Dysprosium Inorganic materials 0.000 claims description 7
- 238000010511 deprotection reaction Methods 0.000 claims description 7
- KBQHZAAAGSGFKK-UHFFFAOYSA-N dysprosium atom Chemical compound [Dy] KBQHZAAAGSGFKK-UHFFFAOYSA-N 0.000 claims description 7
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 claims description 7
- 150000003839 salts Chemical class 0.000 claims description 7
- 229910052771 Terbium Inorganic materials 0.000 claims description 6
- ISAKRJDGNUQOIC-UHFFFAOYSA-N Uracil Chemical compound O=C1C=CNC(=O)N1 ISAKRJDGNUQOIC-UHFFFAOYSA-N 0.000 claims description 6
- 150000004820 halides Chemical class 0.000 claims description 6
- 125000002887 hydroxy group Chemical group [H]O* 0.000 claims description 6
- 125000004309 pyranyl group Chemical group O1C(C=CC=C1)* 0.000 claims description 6
- BWGNESOTFCXPMA-UHFFFAOYSA-N Dihydrogen disulfide Chemical compound SS BWGNESOTFCXPMA-UHFFFAOYSA-N 0.000 claims description 5
- YLQBMQCUIZJEEH-UHFFFAOYSA-N Furan Chemical group C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 claims description 5
- 229910052772 Samarium Inorganic materials 0.000 claims description 5
- 150000007513 acids Chemical class 0.000 claims description 5
- 125000002947 alkylene group Chemical group 0.000 claims description 5
- 150000001408 amides Chemical class 0.000 claims description 5
- 125000002915 carbonyl group Chemical group [*:2]C([*:1])=O 0.000 claims description 5
- 239000002777 nucleoside Substances 0.000 claims description 5
- 125000000843 phenylene group Chemical group C1(=C(C=CC=C1)*)* 0.000 claims description 5
- 108091033319 polynucleotide Proteins 0.000 claims description 5
- 102000040430 polynucleotide Human genes 0.000 claims description 5
- 239000002157 polynucleotide Substances 0.000 claims description 5
- 150000003568 thioethers Chemical class 0.000 claims description 5
- 125000003088 (fluoren-9-ylmethoxy)carbonyl group Chemical group 0.000 claims description 4
- PEHVGBZKEYRQSX-UHFFFAOYSA-N 7-deaza-adenine Chemical compound NC1=NC=NC2=C1C=CN2 PEHVGBZKEYRQSX-UHFFFAOYSA-N 0.000 claims description 4
- NINIDFKCEFEMDL-UHFFFAOYSA-N Sulfur Chemical compound [S] NINIDFKCEFEMDL-UHFFFAOYSA-N 0.000 claims description 4
- 125000005907 alkyl ester group Chemical group 0.000 claims description 4
- 229910052799 carbon Inorganic materials 0.000 claims description 4
- OPTASPLRGRRNAP-UHFFFAOYSA-N cytosine Chemical compound NC=1C=CNC(=O)N=1 OPTASPLRGRRNAP-UHFFFAOYSA-N 0.000 claims description 4
- 229940079593 drug Drugs 0.000 claims description 4
- 239000003814 drug Substances 0.000 claims description 4
- UYTPUPDQBNUYGX-UHFFFAOYSA-N guanine Chemical compound O=C1NC(N)=NC2=C1N=CN2 UYTPUPDQBNUYGX-UHFFFAOYSA-N 0.000 claims description 4
- 239000003446 ligand Substances 0.000 claims description 4
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- 229910052757 nitrogen Inorganic materials 0.000 claims description 4
- 150000003833 nucleoside derivatives Chemical class 0.000 claims description 4
- 239000002773 nucleotide Substances 0.000 claims description 4
- 125000003729 nucleotide group Chemical group 0.000 claims description 4
- ABLZXFCXXLZCGV-UHFFFAOYSA-N phosphonic acid group Chemical group P(O)(O)=O ABLZXFCXXLZCGV-UHFFFAOYSA-N 0.000 claims description 4
- 230000000379 polymerizing effect Effects 0.000 claims description 4
- 229910052717 sulfur Inorganic materials 0.000 claims description 4
- 239000011593 sulfur Substances 0.000 claims description 4
- RWQNBRDOKXIBIV-UHFFFAOYSA-N thymine Chemical compound CC1=CNC(=O)NC1=O RWQNBRDOKXIBIV-UHFFFAOYSA-N 0.000 claims description 4
- 125000002103 4,4'-dimethoxytriphenylmethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)(C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H])C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H] 0.000 claims description 3
- KDCGOANMDULRCW-UHFFFAOYSA-N 7H-purine Chemical compound N1=CNC2=NC=NC2=C1 KDCGOANMDULRCW-UHFFFAOYSA-N 0.000 claims description 3
- CZPWVGJYEJSRLH-UHFFFAOYSA-N Pyrimidine Chemical compound C1=CN=CN=C1 CZPWVGJYEJSRLH-UHFFFAOYSA-N 0.000 claims description 3
- 125000000539 amino acid group Chemical group 0.000 claims description 3
- 125000002344 aminooxy group Chemical group [H]N([H])O[*] 0.000 claims description 3
- 125000001309 chloro group Chemical group Cl* 0.000 claims description 3
- 150000002240 furans Chemical class 0.000 claims description 3
- 150000002540 isothiocyanates Chemical class 0.000 claims description 3
- 125000004433 nitrogen atom Chemical group N* 0.000 claims description 3
- 102000005962 receptors Human genes 0.000 claims description 3
- 108020003175 receptors Proteins 0.000 claims description 3
- 150000003512 tertiary amines Chemical class 0.000 claims description 3
- 230000001052 transient effect Effects 0.000 claims description 3
- 239000001226 triphosphate Substances 0.000 claims description 3
- 229940035893 uracil Drugs 0.000 claims description 3
- LOSIULRWFAEMFL-UHFFFAOYSA-N 7-deazaguanine Chemical compound O=C1NC(N)=NC2=C1CC=N2 LOSIULRWFAEMFL-UHFFFAOYSA-N 0.000 claims description 2
- 229930024421 Adenine Natural products 0.000 claims description 2
- GFFGJBXGBJISGV-UHFFFAOYSA-N Adenine Chemical compound NC1=NC=NC2=C1N=CN2 GFFGJBXGBJISGV-UHFFFAOYSA-N 0.000 claims description 2
- RYYWUUFWQRZTIU-UHFFFAOYSA-N Thiophosphoric acid Chemical compound OP(O)(S)=O RYYWUUFWQRZTIU-UHFFFAOYSA-N 0.000 claims description 2
- 229960000643 adenine Drugs 0.000 claims description 2
- 150000001412 amines Chemical class 0.000 claims description 2
- 229940104302 cytosine Drugs 0.000 claims description 2
- 239000011859 microparticle Substances 0.000 claims description 2
- 229920001282 polysaccharide Polymers 0.000 claims description 2
- 108090000623 proteins and genes Proteins 0.000 claims description 2
- 102000004169 proteins and genes Human genes 0.000 claims description 2
- 150000007970 thio esters Chemical class 0.000 claims description 2
- 229940113082 thymine Drugs 0.000 claims description 2
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 claims 2
- 150000003008 phosphonic acid esters Chemical class 0.000 claims 2
- 125000004429 atom Chemical group 0.000 claims 1
- PTMHPRAIXMAOOB-UHFFFAOYSA-N phosphoramidic acid Chemical compound NP(O)(O)=O PTMHPRAIXMAOOB-UHFFFAOYSA-N 0.000 claims 1
- GVGXPXPGZLUONX-UHFFFAOYSA-N samarium Chemical compound [Sm][Sm][Sm][Sm][Sm][Sm][Sm][Sm][Sm][Sm][Sm][Sm][Sm][Sm] GVGXPXPGZLUONX-UHFFFAOYSA-N 0.000 claims 1
- DKWSBNMUWZBREO-UHFFFAOYSA-N terbium Chemical compound [Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb][Tb] DKWSBNMUWZBREO-UHFFFAOYSA-N 0.000 claims 1
- 125000001399 1,2,3-triazolyl group Chemical group N1N=NC(=C1)* 0.000 abstract description 7
- 229940123150 Chelating agent Drugs 0.000 abstract 2
- QTBSBXVTEAMEQO-UHFFFAOYSA-M Acetate Chemical compound CC([O-])=O QTBSBXVTEAMEQO-UHFFFAOYSA-M 0.000 description 21
- 229910052739 hydrogen Inorganic materials 0.000 description 21
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 9
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- 239000002585 base Substances 0.000 description 8
- 230000005284 excitation Effects 0.000 description 8
- NFHFRUOZVGFOOS-UHFFFAOYSA-N palladium;triphenylphosphane Chemical compound [Pd].C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1.C1=CC=CC=C1P(C=1C=CC=CC=1)C1=CC=CC=C1 NFHFRUOZVGFOOS-UHFFFAOYSA-N 0.000 description 8
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- KRKNYBCHXYNGOX-UHFFFAOYSA-N citric acid Chemical compound OC(=O)CC(O)(C(O)=O)CC(O)=O KRKNYBCHXYNGOX-UHFFFAOYSA-N 0.000 description 6
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- 238000000746 purification Methods 0.000 description 6
- JUJWROOIHBZHMG-UHFFFAOYSA-N pyridine Substances C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 description 6
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- HBENZIXOGRCSQN-VQWWACLZSA-N (1S,2S,6R,14R,15R,16R)-5-(cyclopropylmethyl)-16-[(2S)-2-hydroxy-3,3-dimethylpentan-2-yl]-15-methoxy-13-oxa-5-azahexacyclo[13.2.2.12,8.01,6.02,14.012,20]icosa-8(20),9,11-trien-11-ol Chemical compound N1([C@@H]2CC=3C4=C(C(=CC=3)O)O[C@H]3[C@@]5(OC)CC[C@@]2([C@@]43CC1)C[C@@H]5[C@](C)(O)C(C)(C)CC)CC1CC1 HBENZIXOGRCSQN-VQWWACLZSA-N 0.000 description 3
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- MUXZPQBQKLZDPI-UHFFFAOYSA-N 2-[[6-[6-[[bis(carboxymethyl)amino]methyl]-4-(5-bromofuran-2-yl)-6-pyridin-2-yl-1H-pyridin-2-yl]pyridin-2-yl]methyl-(carboxymethyl)amino]acetic acid Chemical compound C1=CC=NC(=C1)C2(C=C(C=C(N2)C3=CC=CC(=N3)CN(CC(=O)O)CC(=O)O)C4=CC=C(O4)Br)CN(CC(=O)O)CC(=O)O MUXZPQBQKLZDPI-UHFFFAOYSA-N 0.000 description 1
- PPXUUPXQWDQNGO-UHFFFAOYSA-N 2-azidoacetic acid Chemical compound OC(=O)CN=[N+]=[N-] PPXUUPXQWDQNGO-UHFFFAOYSA-N 0.000 description 1
- VKIGAWAEXPTIOL-UHFFFAOYSA-N 2-hydroxyhexanenitrile Chemical compound CCCCC(O)C#N VKIGAWAEXPTIOL-UHFFFAOYSA-N 0.000 description 1
- 125000003903 2-propenyl group Chemical group [H]C([*])([H])C([H])=C([H])[H] 0.000 description 1
- OYBOVXXFJYJYPC-UHFFFAOYSA-N 3-azidopropan-1-amine Chemical compound NCCCN=[N+]=[N-] OYBOVXXFJYJYPC-UHFFFAOYSA-N 0.000 description 1
- DSQFEYRZKLNHPX-UHFFFAOYSA-N 5-bromo-6-(cyclopropylamino)-1h-pyrimidine-2,4-dione Chemical compound OC1=NC(O)=C(Br)C(NC2CC2)=N1 DSQFEYRZKLNHPX-UHFFFAOYSA-N 0.000 description 1
- OBFAVPDSVCNUET-UHFFFAOYSA-N 5-bromo-6-hydrazinyl-1h-pyrimidine-2,4-dione Chemical compound NNC1=NC(O)=NC(O)=C1Br OBFAVPDSVCNUET-UHFFFAOYSA-N 0.000 description 1
- HIHOEGPXVVKJPP-JTQLQIEISA-N 5-fluoro-2-[[(1s)-1-(5-fluoropyridin-2-yl)ethyl]amino]-6-[(5-methyl-1h-pyrazol-3-yl)amino]pyridine-3-carbonitrile Chemical compound N([C@@H](C)C=1N=CC(F)=CC=1)C(C(=CC=1F)C#N)=NC=1NC=1C=C(C)NN=1 HIHOEGPXVVKJPP-JTQLQIEISA-N 0.000 description 1
- 101100489581 Caenorhabditis elegans par-5 gene Proteins 0.000 description 1
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical group [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 1
- CYSWUSAYJNCAKA-FYJFLYSWSA-N ClC1=C(C=CC=2N=C(SC=21)OCC)OC1=CC=C(C=N1)/C=C/[C@H](C)NC(C)=O Chemical compound ClC1=C(C=CC=2N=C(SC=21)OCC)OC1=CC=C(C=N1)/C=C/[C@H](C)NC(C)=O CYSWUSAYJNCAKA-FYJFLYSWSA-N 0.000 description 1
- RYGMFSIKBFXOCR-UHFFFAOYSA-N Copper Chemical compound [Cu] RYGMFSIKBFXOCR-UHFFFAOYSA-N 0.000 description 1
- HMFHBZSHGGEWLO-SOOFDHNKSA-N D-ribofuranose Chemical compound OC[C@H]1OC(O)[C@H](O)[C@@H]1O HMFHBZSHGGEWLO-SOOFDHNKSA-N 0.000 description 1
- 238000001712 DNA sequencing Methods 0.000 description 1
- KRHYYFGTRYWZRS-UHFFFAOYSA-M Fluoride anion Chemical compound [F-] KRHYYFGTRYWZRS-UHFFFAOYSA-M 0.000 description 1
- 238000005033 Fourier transform infrared spectroscopy Methods 0.000 description 1
- 229910052688 Gadolinium Inorganic materials 0.000 description 1
- UFHFLCQGNIYNRP-UHFFFAOYSA-N Hydrogen Chemical compound [H][H] UFHFLCQGNIYNRP-UHFFFAOYSA-N 0.000 description 1
- HPKJGHVHQWJOOT-ZJOUEHCJSA-N N-[(2S)-3-cyclohexyl-1-oxo-1-({(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)propan-2-yl]-1H-indole-2-carboxamide Chemical compound C1C(CCCC1)C[C@H](NC(=O)C=1NC2=CC=CC=C2C=1)C(=O)N[C@@H](C[C@H]1C(=O)NCC1)C=O HPKJGHVHQWJOOT-ZJOUEHCJSA-N 0.000 description 1
- 239000007832 Na2SO4 Substances 0.000 description 1
- 241000737052 Naso hexacanthus Species 0.000 description 1
- 238000001069 Raman spectroscopy Methods 0.000 description 1
- PYMYPHUHKUWMLA-LMVFSUKVSA-N Ribose Natural products OC[C@@H](O)[C@@H](O)[C@@H](O)C=O PYMYPHUHKUWMLA-LMVFSUKVSA-N 0.000 description 1
- 239000002262 Schiff base Substances 0.000 description 1
- 150000004753 Schiff bases Chemical class 0.000 description 1
- PMZURENOXWZQFD-UHFFFAOYSA-L Sodium Sulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=O PMZURENOXWZQFD-UHFFFAOYSA-L 0.000 description 1
- NELWQUQCCZMRPB-UBPLGANQSA-N [(2r,3r,4r,5r)-4-acetyloxy-5-(4-amino-5-ethenyl-2-oxopyrimidin-1-yl)-2-methyloxolan-3-yl] acetate Chemical compound CC(=O)O[C@@H]1[C@H](OC(C)=O)[C@@H](C)O[C@H]1N1C(=O)N=C(N)C(C=C)=C1 NELWQUQCCZMRPB-UBPLGANQSA-N 0.000 description 1
- 239000012190 activator Substances 0.000 description 1
- 125000003342 alkenyl group Chemical group 0.000 description 1
- 230000029936 alkylation Effects 0.000 description 1
- 238000005804 alkylation reaction Methods 0.000 description 1
- SRVFFFJZQVENJC-IHRRRGAJSA-N aloxistatin Chemical compound CCOC(=O)[C@H]1O[C@@H]1C(=O)N[C@@H](CC(C)C)C(=O)NCCC(C)C SRVFFFJZQVENJC-IHRRRGAJSA-N 0.000 description 1
- HMFHBZSHGGEWLO-UHFFFAOYSA-N alpha-D-Furanose-Ribose Natural products OCC1OC(O)C(O)C1O HMFHBZSHGGEWLO-UHFFFAOYSA-N 0.000 description 1
- 125000003277 amino group Chemical group 0.000 description 1
- 229910052786 argon Inorganic materials 0.000 description 1
- QVGXLLKOCUKJST-UHFFFAOYSA-N atomic oxygen Chemical compound [O] QVGXLLKOCUKJST-UHFFFAOYSA-N 0.000 description 1
- 239000011324 bead Substances 0.000 description 1
- 125000004744 butyloxycarbonyl group Chemical group 0.000 description 1
- 150000001718 carbodiimides Chemical class 0.000 description 1
- AEULIVPVIDOLIN-UHFFFAOYSA-N cep-11981 Chemical compound C1=C2C3=C4CNC(=O)C4=C4C5=CN(C)N=C5CCC4=C3N(CC(C)C)C2=CC=C1NC1=NC=CC=N1 AEULIVPVIDOLIN-UHFFFAOYSA-N 0.000 description 1
- 238000004440 column chromatography Methods 0.000 description 1
- 238000009833 condensation Methods 0.000 description 1
- 230000005494 condensation Effects 0.000 description 1
- 229910052802 copper Inorganic materials 0.000 description 1
- 239000010949 copper Substances 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- KXXXZDYKXVEBJJ-UHFFFAOYSA-N diethyl 4-ethynylpyridine-2,6-dicarboxylate Chemical compound CCOC(=O)C1=CC(C#C)=CC(C(=O)OCC)=N1 KXXXZDYKXVEBJJ-UHFFFAOYSA-N 0.000 description 1
- 125000004177 diethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- IJKVHSBPTUYDLN-UHFFFAOYSA-N dihydroxy(oxo)silane Chemical compound O[Si](O)=O IJKVHSBPTUYDLN-UHFFFAOYSA-N 0.000 description 1
- NAGJZTKCGNOGPW-UHFFFAOYSA-K dioxido-sulfanylidene-sulfido-$l^{5}-phosphane Chemical compound [O-]P([O-])([S-])=S NAGJZTKCGNOGPW-UHFFFAOYSA-K 0.000 description 1
- WJJMNDUMQPNECX-UHFFFAOYSA-N dipicolinic acid Chemical compound OC(=O)C1=CC=CC(C(O)=O)=N1 WJJMNDUMQPNECX-UHFFFAOYSA-N 0.000 description 1
- 229940000406 drug candidate Drugs 0.000 description 1
- 238000009509 drug development Methods 0.000 description 1
- IOIFRTZBJMZZFO-UHFFFAOYSA-N dysprosium(3+) Chemical compound [Dy+3] IOIFRTZBJMZZFO-UHFFFAOYSA-N 0.000 description 1
- 238000000295 emission spectrum Methods 0.000 description 1
- 238000000695 excitation spectrum Methods 0.000 description 1
- 238000002474 experimental method Methods 0.000 description 1
- 238000002189 fluorescence spectrum Methods 0.000 description 1
- 125000000524 functional group Chemical group 0.000 description 1
- UIWYJDYFSGRHKR-UHFFFAOYSA-N gadolinium atom Chemical compound [Gd] UIWYJDYFSGRHKR-UHFFFAOYSA-N 0.000 description 1
- 125000001475 halogen functional group Chemical group 0.000 description 1
- 238000013537 high throughput screening Methods 0.000 description 1
- 239000001257 hydrogen Substances 0.000 description 1
- 238000002329 infrared spectrum Methods 0.000 description 1
- 230000007775 late Effects 0.000 description 1
- 238000004020 luminiscence type Methods 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 238000001819 mass spectrum Methods 0.000 description 1
- 239000011159 matrix material Substances 0.000 description 1
- 239000002808 molecular sieve Substances 0.000 description 1
- 239000002102 nanobead Substances 0.000 description 1
- 238000000655 nuclear magnetic resonance spectrum Methods 0.000 description 1
- 108020004707 nucleic acids Proteins 0.000 description 1
- 102000039446 nucleic acids Human genes 0.000 description 1
- 150000007523 nucleic acids Chemical class 0.000 description 1
- 125000003835 nucleoside group Chemical group 0.000 description 1
- 238000002515 oligonucleotide synthesis Methods 0.000 description 1
- 125000002524 organometallic group Chemical group 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- 229910052760 oxygen Inorganic materials 0.000 description 1
- 238000010647 peptide synthesis reaction Methods 0.000 description 1
- 239000000816 peptidomimetic Substances 0.000 description 1
- 150000002989 phenols Chemical class 0.000 description 1
- 150000004713 phosphodiesters Chemical class 0.000 description 1
- 230000004962 physiological condition Effects 0.000 description 1
- 229920000642 polymer Polymers 0.000 description 1
- 102000004196 processed proteins & peptides Human genes 0.000 description 1
- VVWRJUBEIPHGQF-UHFFFAOYSA-N propan-2-yl n-propan-2-yloxycarbonyliminocarbamate Chemical compound CC(C)OC(=O)N=NC(=O)OC(C)C VVWRJUBEIPHGQF-UHFFFAOYSA-N 0.000 description 1
- 150000003222 pyridines Chemical class 0.000 description 1
- 238000010791 quenching Methods 0.000 description 1
- 230000000171 quenching effect Effects 0.000 description 1
- 239000012217 radiopharmaceutical Substances 0.000 description 1
- 229940121896 radiopharmaceutical Drugs 0.000 description 1
- 230000002799 radiopharmaceutical effect Effects 0.000 description 1
- 239000000376 reactant Substances 0.000 description 1
- 125000000548 ribosyl group Chemical group C1([C@H](O)[C@H](O)[C@H](O1)CO)* 0.000 description 1
- 239000000523 sample Substances 0.000 description 1
- 230000035945 sensitivity Effects 0.000 description 1
- 150000003384 small molecules Chemical class 0.000 description 1
- URGAHOPLAPQHLN-UHFFFAOYSA-N sodium aluminosilicate Chemical compound [Na+].[Al+3].[O-][Si]([O-])=O.[O-][Si]([O-])=O URGAHOPLAPQHLN-UHFFFAOYSA-N 0.000 description 1
- 229910052938 sodium sulfate Inorganic materials 0.000 description 1
- 238000010532 solid phase synthesis reaction Methods 0.000 description 1
- 238000001179 sorption measurement Methods 0.000 description 1
- 238000004611 spectroscopical analysis Methods 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 125000001424 substituent group Chemical group 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- HKCRVXUAKWXBLE-UHFFFAOYSA-N terbium(3+) Chemical compound [Tb+3] HKCRVXUAKWXBLE-UHFFFAOYSA-N 0.000 description 1
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- DZLFLBLQUQXARW-UHFFFAOYSA-N tetrabutylammonium Chemical compound CCCC[N+](CCCC)(CCCC)CCCC DZLFLBLQUQXARW-UHFFFAOYSA-N 0.000 description 1
- CZDYPVPMEAXLPK-UHFFFAOYSA-N tetramethylsilane Chemical compound C[Si](C)(C)C CZDYPVPMEAXLPK-UHFFFAOYSA-N 0.000 description 1
- 125000003396 thiol group Chemical group [H]S* 0.000 description 1
- RYYWUUFWQRZTIU-UHFFFAOYSA-K thiophosphate Chemical compound [O-]P([O-])([O-])=S RYYWUUFWQRZTIU-UHFFFAOYSA-K 0.000 description 1
- 238000001685 time-resolved fluorescence spectroscopy Methods 0.000 description 1
- CWMFRHBXRUITQE-UHFFFAOYSA-N trimethylsilylacetylene Chemical group C[Si](C)(C)C#C CWMFRHBXRUITQE-UHFFFAOYSA-N 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
- C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic Table
- C07F9/02—Phosphorus compounds
- C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
- C07F9/6558—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing at least two different or differently substituted hetero rings neither condensed among themselves nor condensed with a common carbocyclic ring or ring system
- C07F9/65583—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing at least two different or differently substituted hetero rings neither condensed among themselves nor condensed with a common carbocyclic ring or ring system each of the hetero rings containing nitrogen as ring hetero atom
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D213/00—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members
- C07D213/02—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members
- C07D213/04—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D213/24—Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with substituted hydrocarbon radicals attached to ring carbon atoms
- C07D213/36—Radicals substituted by singly-bound nitrogen atoms
- C07D213/38—Radicals substituted by singly-bound nitrogen atoms having only hydrogen or hydrocarbon radicals attached to the substituent nitrogen atom
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D257/00—Heterocyclic compounds containing rings having four nitrogen atoms as the only ring hetero atoms
- C07D257/02—Heterocyclic compounds containing rings having four nitrogen atoms as the only ring hetero atoms not condensed with other rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/02—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
- C07D401/04—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring-member bond
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/14—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D405/00—Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom
- C07D405/14—Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
- C07D417/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
- C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic Table
- C07F9/02—Phosphorus compounds
- C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
- C07F9/6558—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing at least two different or differently substituted hetero rings neither condensed among themselves nor condensed with a common carbocyclic ring or ring system
- C07F9/65586—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing at least two different or differently substituted hetero rings neither condensed among themselves nor condensed with a common carbocyclic ring or ring system at least one of the hetero rings does not contain nitrogen as ring hetero atom
Definitions
- This invention relates to metal chelates, metal chelating agents, par- 5 tides and bioactive molecules containing 1 ,2,3-triazolyl subunits.
- the labels used in works based on click chemistry are organic dyes.
- the organic fluorophores as labels have several drawbacks, such as
- lanthanide(lll) chelates 35 erties of lanthanide(lll) chelates can be exploited particularity in homogenous assays, when the use of conventional chromophores causes very high background.
- the different photochemical properties of europium, terbium, dysprosium and samarium chelates enable even development of multi- parametric homogenous assays [Hemmila, L; Mukkala, V.-M. 2001 , Crit. Rev. 5 Clin. Lab. Sci. 441].
- lanthanide(lll) chelates are in most cases readily soluble in water. Accordingly, a number of attempts have been made to develop highly luminescent chelate labels suitable for time-resolved fluoromet- ric applications. These include e.g. stabile chelates composed of derivatives of pyridines [US 4,920,195, US 4,801 ,722, US 4,761 ,481 , PCT/FI91 /00373,
- the main object of the present invention is to provide chelating agents containing a 1 ,2,3-triazolyl subunit and metal chelates thereof, useful for labeling biomolecules and particles for use as probes in time resolved fluo- 5 rescence spectroscopy, magnetic resonance imaging (MRI), single photon emission computed tomography (SPECT) or positron emission tomography (PET).
- MRI magnetic resonance imaging
- SPECT single photon emission computed tomography
- PET positron emission tomography
- a particular object of this invention is to provide chelating agent containing a 1 ,2,3-triazolyl subunit which give a very strong fluorescense with dif- 10 ferent chelated lanthanide ions, particularly with europium (III), samarium (III), terbium (III) and dysprosium (III).
- lanthanide chelates are especially useful in multiparameter bioaffinity assays and in high-throughput screening of drug candidates.
- a further object of this invention is to provide chelating agents con- 15 taining a 1 ,2,3-triazolyl subunit giving rise to metal chelates of high stability.
- a particular object is to achieve chelates with strong stability enough for use in in vivo applications, for example in MRI, SPECT or PET applications.
- a further object is to provide chelates or chelating agents suitable for labeling of biomolecules or particles in solution exploiting Huisgen's 20 cycloaddition reaction.
- Yet another object is to provide chelating agents containing a 1 ,2,3- triazolyl subunit suitable for labeling oligopeptides or oligonucleotides simultaneously with their synthesis on a solid phase.
- Yet another object is to provide a solid support conjugated with che- 25 lates, chelating agents or biomolecules according to this invention.
- Yet another object is to provide biomolecules and particles conjugated with chelates and chelating agents of this invention.
- this invention concerns an A lanthanide chelate or chelating agent, comprising a 1 ,2,3-triazole subunit, wherein 30 said chelate or chelating agent is represented by formula (I)
- A is a reactive group or not present
- L is a linker or not present
- group G comprises a chelating group having at least two carboxylic acid or phosphonic acid groups, or esters or salts of said acids, and a chromophoric moiety having one or more aromatic units, and G optionally includes a che-
- the chelating part is attached to an aromatic unit of the chromophoric moiety either directly or via an ⁇ /-containing hydrocarbon chain,
- the reactive group A is selected from the group consisting of 20 isothiocyanate, haloacetamido, maleimido, dichlorotriazinyl, pyridyldithio, thio- ester, aminooxy, hydrazide, amino, a polymerizing group, and a carboxylic acid or an acid halide or an active ester thereof,
- the lanthanide ion is selected from europium(lll), terbium(lll), samarium(lll) and dysprosium(IM).
- Another aspect of this inventions invention concerns chelating agent, comprising a 1 ,2,3-triazole subunit, wherein said chelate or chelating agent is represented by formula (I), characterized in that the reactive group A is an amino acid residue -CH(N HR 1 )R 5 where R 1 is a transient protecting group and R 5 is a carboxylic acid or its salt, acid halide or an ester.
- chelating agent comprising a 1 ,2,3-triazole subunit, wherein said chelate or chelating agent is represented by formula (I), characterized in that the reactive group A is
- Z 1 is chloro or NR 2 R 3 R 4 is a protecting group, R 2 and R 3 are alkyl groups,
- Y is absent or is a radical of a purine base or a pyrimidine base or any other modified base suitable for use in the synthesis of modified oligonu- 5 cleotides, said base being connected to the oxygen atom via either a) a hydrocarbon chain, which is substituted with a protected hy- droxyethyl group, or via b) a furan ring or pyrane ring or any modified furan or pyrane ring, suitable for use in the synthesis of modified oligonucleotides.
- Figure 1 shows emission and excitation spectrum of a luminescent europium(lll) chelate 11a (A) and a luminescent terbium(lll) chelate 11b (B) synthesized according to this invention.
- the chelating part in G is attached to the said triazole subunit either (a) via a linker L 2 directly or via an /V-containing hydrocarbon chain, or (b) to an aromatic unit of the chromophoric moiety, either directly or via an ⁇ /-containing hydrocarbon chain.
- the invention concerns a chelate
- a chelating part comprising at least two carboxylic acid or phos- phonic acid groups, or esters or salts of said acids, attached either to an aromatic unit of the chromophoric moiety, either directly or via an ⁇ /-containing 6
- hydrocarbon chain or where the chelating part is attached directly or via an N- containing hydrocarbon chain to the 1 ,2,3-triazole subunit and
- group A being a radical of a a bioactive molecule or a particle
- the invention concerns a particle 10 conjugated with a chelate or a labeled biomolecule according to this invention.
- this invention concerns a labeled oligopeptide, obtained by synthesis on a solid phase, by introduction of an appropriate chelating agent according to this invention into the oligopeptide structure on an oligopeptide synthesizer, followed by deprotection and optionally al- 15 so introduction of a metal ion.
- this invention concerns a labeled oligonucleotide, obtained by synthesis on a solid phase, by introduction of an appropriate chelating agent according to this invention into the oligonucleotide structure on an oligonucleotide synthesizer, followed by deprotection and op-
- this invention concerns a particle conjugated with the chelating agent according to this invention suitable for use in the synthesis of an oligonucleotide or an oligopeotide.
- this invention concerns a che- 25 lating agent containing a 1 ,2,3-triazolyl subunit and comprising
- a chelating part comprising at least two carboxylic acid or phos- phonic acid groups, or esters or salts of said acids, attached to an aromatic unit of the chromophoric moiety, either directly or via an ⁇ /-containing hydro-
- this invention concerns bioactive molecules and particles conjugated with the chelating agents or chelates 35 of this invention.
- the invention concerns also a chelate comprising the aforementioned chelating agent and a metal ion.
- Chelating agents and metal chelates comprising a 1 ,2,3-triazole 5 subunit are new. Furthermore, no chelating agents, metal chelates, b ⁇ oactive molecules or particles tethered to metal chelates containing triazole subunits have been disclosed.
- the triazole ring can be conjugated directly without any linker L 2 to the chromophoric moiety, and thus it is part of the aromatic moiety capable of
- the chromophoric unit may comprise unsubstituted pyridyl groups, pyridyl groups bearing other substitu- ents and/or other aromatic groups.
- the 1 ,2,3-triazole subunit is tethered to a linker arm L 2 .
- the agent can be formed by a reaction between a chelating agent or a metal chelate tethered to an alkynyl function and a bioactive molecule, a linker molecule or a particle tethered to an azide function.
- the agent can be formed by a reaction between a chelating agent or a metal chelate tethered to an azide function and a bioactive molecule, a linker molecule
- the reactive group A in principle in many applications could be attached directly to the chromophoric group or to the chelating part, it is highly desirable, especially for steric reasons, to have a linker L 1 between the reactive group A and the triazole subunit and chromophoric group or chelating part, respectively.
- the linker is especially important in case the chelate
- the reactive group A is selected from the group consisting of isothiocyanate, haloacetamido, maleimido, dichlorotriazinyl, pyridyldithio, th ⁇ oester, aminooxy, hydrazide, amino, a po-
- the chelate or chelating agent shall be attached to mi- croparticle or nanoparticle it is preferable to have a reactive group which is a polymerizing group.
- the label can be introduced in the particle during the manufacturing of the particles.
- R ' represents an alkyl group containing [ess than 5 carbon atoms.
- one of the linkers L 1 and L 2 can also be missing.
- G is one of the following specific structures: v wherein Z is independently selected from furyl, thienyl, phenyl or phenylethynyl, where phenyl is substituted or unsubstitued, or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to 5 the triazole subunit or to a linker L 2 which in turn is tethered to the triazole sub- unit.
- phenyl is preferably trial koxy- substituted, most preferably trimethoxysubstituted.
- the chelating agent according to this invention is suitable for use in the synthesis of an oligopeptide.
- the reactive group A is connected to the triazole subunit via 5 a linker L 1 , and A is an amino acid residue -CH(NHR 1 JR 5 where R 1 is a transient protecting group and R 5 is a carboxylic acid or its salt, acid halide or an ester.
- Z is independently selected from furyl, thienyl, phenyl or phenylethynyf, where phenyl is substituted or unsubstitued or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to 5 the triazole subunit or to a linker L 2 which in turn is tethered to the triazole sub- unit.
- L 2 is as defined before and the protecting group R 1 is selected from a group consisting of Fmoc (fluorenylmethoxycarbonyl), Boc (tert- 12
- R" is an alkyl ester or an allyl ester.
- the chelating agent can be introduced into biomolecules with the aid of peptide synthesizer.
- the chelating agent can be coupled to an amino 5 tethered solid support or immobilized amino acid e.g. by carbodiimide chemistry described in Jones, J., The Chemical Synthesis of Peptides, Oxford Unive- sity Press, Oxford, 1994, (i.e. the carboxylic acid function of the labeling reagent reacts with the amino group of the solid support or amino acid in the presence of an activator).
- sient amino protecting group of the labeling reagent is selectively removed while the material is still attached to the solid support (e.g with piperidine in the case of Fmoc-protecting group). Then second coupling of a chelating agent or other reagent (amino acid, hapten) is performed as above. When the synthesis of the desired molecule is completed, the material is detached from the solid
- the chelating agent ac- 20 cording to this invention is suitable for use in the synthesis of an oligonucleotide.
- the reactive group A is connected to the triazoie subunit via a linker L 1 , and A is
- Y-O-PZ 1 -O-R 4 where one of the oxygen atoms optionally is replaced by sulfur, Z 1 is 25 chloro or NR 2 R 3 , R 4 is a protecting group, R 2 and R 3 are alkyl groups, and Y is absent or is a radical of a purine base or a pyrimidine base or any other modified base suitable for use in the synthesis of modified oligonucleotides.
- Said base is connected to the oxygen atom either via i) a hydrocarbon chain, which is substituted with a protected hydroxyethyl group, or via ii) a furan ring or 30 pyrane ring or any modified furan or pyrane ring, suitable for use in the synthesis of modified oligonucleotides.
- the chelating agent can be introduced into oligonucleotides with the aid of oligonucleotide synthesizer.
- a useful method based on a Mitsonobu al- kylation (J Org Chem, 1999, 64, 5083; Nucleosides, Nucleotides, 1999, 18,
- oligonucleotide structure during chain assembly.
- solution phase labeling and laborious purification procedures are avoided.
- the key reaction in the synthesis strategy towards nucleosidic oligonucleotide building blocks is the aforementioned Mitsunobu alkylation which allows introduction of various chelating 5 agents to the nucleoside, and finally to the oligonucleotide structure.
- the chelating agents are introduced during the chain assembly. Conversion to the lan- thanide chelate takes place after the synthesis during the deprotection steps.
- oligonucleotide 10 living cell. It may therefore desirable to create a modified oligonucleotide according to known methods so as to enhance its stability against chemical and enzymatic degradation. Modifications of oligonucleotides are extensively disclosed in prior art. Reference is made to US 5,612,215. It is known that removal or replacement of the 2'-OH group from the ribose unit in an RNA chain
- WO 92/07065 and US 5,672,695 discloses the replacement of the ribose 2'-OH group with halo, amino, azido or sulfhydryl groups.
- US 5,334,711 discloses the replacement of hydrogen in the 2'-OH group by alkyl or alkenyl, preferably methyl or allyl groups.
- the in- ternucleotidic phosphodiester linkage can, for example, be modified so that
- one ore more oxygen is replaced by sulfur, amino, alkyl or aikoxy groups.
- Preferable modification in the internucleotide linkages are phosphorothioate linkages.
- the base in the nucleotides can be modified.
- Y is a radical of any of the bases thymine, uracil, adenine, guanine, cytosine, 7-deazaadenine or 7-deazaguanine, and said base is
- a reactive group -Y-O-P(NR 2 R 3 J-O-R 4 has a structure se-
- a particularly preferable chelating agent for this use is selected from one of the specific structures disclosed below
- R where R" is an alkyl ester or an ally! ester.
- the chelates comprise a chelating agent as describes above and a chelated metal ion.
- the chelated metal ion M is preferably a lanthanide, especially europium(lll), samarium(lll), terbi ⁇ m(lll) or dysprosium(lll).
- G in the chelating agent is preferably one of the following:
- M is metal and Z is independently selected from furyl, thie- nyl, phenyl or phenylethynyl, where phenyl is substituted or unsubstitued or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to the triazole subunit or to a linker L 2 which in turn is tethered to
- the chelates comprise a chelating agent as describes above and a chelated metal ion.
- the chelated metal ion M is preferably a lanthanide, especially europium(lll), samarium(lll), 10 terbium(lll) or dysprosium(lll).
- the chelating agent is preferably one of the preferable agents mentioned above.
- the chelates according to this invention can also be used in vivo in MRI applications or in PET applications.
- a preferable metal to be used in MRI is gadolinium.
- lanthanides particularly europium (III), but also 15 other lanthanides such as samarium (III) and dysprosium (III) are useful in MRI appiications.
- SPECT applications the most suitable isotyopes are Tc-98m and ln-111.
- PET applications a radioactive metal isotope is introduced into the chelating agent just before use.
- radioactive isotopes are Ga-66, Ga-67, Ga-68, Cr-51 , ln-111 , Y-90, Ho-166, Sm-153, Lu-177, Er- 20 169, Tb-161 , Dy-165, Ho-166, Ce-134, Nd-140, Eu-157, Er-165, Ho-161 , Eu- 147, Tm-167 and Co-57.
- the chelate is 25 one of the following specific structures:
- the biomolecule conjugated with a chelating agent or a chelate according to this invention is preferably an oligopeptide, oligonucleotide, nucleoside, nucleotide, nucleoside 5 ' -triphosphate, DNA, RNA, modified oligo- or polynucleotide, such as phosphoromonothioate, phosphorodithioate, phos- 19
- the chelates, chelating agents and biomolecules according to this invention may be conjugated on a particle.
- the particle is preferably a particle such as a microparticle or nanoparticle, a slide or a plate.
- the chelate or chelating agent may be introduced in the
- the biomolecule conjugated with the particle either covalently or noncovalently is preferable a labeled oligopeptide, obtained by synthesis on a solid phase, by introduction of a chelating agent into the oligopeptide structure on an oligopeptide synthesizer, followed by deprotection and optionally intro-
- the biomolecule conjugated with the particle either covalently or noncovalently is preferable a labeled oligonucleotide, obtained by synthesis on a solid phase, by introduction of a chelating agent into the oligonucleotide structure on an oligonucleotide synthesizer, followed by deprotection and optionally introduction of a metal ion.
- Scheme 1 illustrates the synthesis of the chelating agents containing 4-((3-hydroxypropyl)-1 tf-1 ,2,3-triazolyI subunits. The experimental details are given in Examples 1-8.
- Scheme 2 illustrates the synthesis of various cheating agents with based on pyridine-2,6-diyl)bis(methylenenitrilo)]- tetrakis(acetate).
- Example 4 yielded the title compound.
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Abstract
The invention relates to novel chelating agents and metal chelates containing 1,2,3-triazolyl subunits, and their conjugates with biomolecules or particles. The invention concerns also a process for the preparation of the novel chelatingagents and chelates.
Description
1
METAL CHELATES AND CHELATING AGENTS CONTAINING TRIAZOLYL SUBUNITS
FIELD OF THE INVENTION
This invention relates to metal chelates, metal chelating agents, par- 5 tides and bioactive molecules containing 1 ,2,3-triazolyl subunits.
BACKGROUND OF THE INVENTION
The copper(l) catalyzed Huisgen's dipolar [2+3] cycloaddition of azide and alkynes is a powerful direct method to prepare 1 ,4-disubstituted 1 ,2,3-triazoles [KoIb. H.C.Sharpless, K.B., 2001 , Angew. Chem. Int. Ed. Engl.
10 40, 2004]. This reaction has been used increasingly in modular drug development and in the preparation of small-molecule radiopharmaceuticals, in DNA sequencing [KoIb, H.C., Sharpless, K.B., 2003, Drug Discov. Today, 8, 1128, Seo, T.S., Bai, X., Li, Z., Ruparel, H., Turro, N., Ju, 2004, Prog. Natl. Acad. Sci. USA, 101 , 5488] as well as for conjugation of various label molecules to
15 nanomaterials [Joralemon, M.J., O'Reilly, R.K., Hawker, G.J., Wooley, K.L., 2005, J. Am. Chem. Soc, 127, 16892, Sun, E.Y., Josephson, L., Weissleder, R. 2006, MoI. Imaging 5, 122] and biomolecules [Agard, N.J., Prescher, J.A., Bertozzi, C.R., 2004, J.Am. Chem. Soc, 126, 15046]. The reaction has also been exploited in the preparation of peptidomimetics [Arosio, D., Bertoli, M.,
20 Manzoni, L., Scoiastico, C1 2006, Tetrahedron Lett., 47, 3697, and various organic molecules [Yap, A.H., Weinreb, S. M., 2006, Tetrahedron Lett., 47, 3035, Molander, G.A, Ham, J., 2006, Org. Lett, 8, 2767].
The labels used in works based on click chemistry are organic dyes. However, the organic fluorophores as labels have several drawbacks, such as
25 Raman and Raleygh scattering, low water solubility and concentration quenching. Thus multilabeling with organic fluorophores may not enhance detection sensitivity to the degree needed in several applications. Furthermore, they may decrease the the water solubility of the target molecules dramatically.
Time-resolved fluorometry exploits the unique fluorescence
30 properties of lanthanide(lll) chelates. The long fluorescence decay after excitation of these molecules allows time-delayed signal detection. This eliminates background signal originating e.g. from microplates or buffer components. The large Stokes shift (i.e. the difference in the chelate's excitation and emission lines), in turn, results in a high sϊgnal-to-background ratio. These unique prop-
35 erties of lanthanide(lll) chelates can be exploited particularity in homogenous
assays, when the use of conventional chromophores causes very high background. The different photochemical properties of europium, terbium, dysprosium and samarium chelates enable even development of multi- parametric homogenous assays [Hemmila, L; Mukkala, V.-M. 2001 , Crit. Rev. 5 Clin. Lab. Sci. 441]. Furthermore, lanthanide(lll) chelates are in most cases readily soluble in water. Accordingly, a number of attempts have been made to develop highly luminescent chelate labels suitable for time-resolved fluoromet- ric applications. These include e.g. stabile chelates composed of derivatives of pyridines [US 4,920,195, US 4,801 ,722, US 4,761 ,481 , PCT/FI91 /00373,
10 US 4,459,186, EP A-0770610, Remuinan et al, J. Chem. Soc. Perkin Trans 2, 1993, 1099], bipyridines [US 5,216,134], terpyridines [US 4,859,777, US 5,202,423, US 5,324,825, Wang, Z., Yan, J., Matsumoto, K., 2005, Luminescence, 20, 347] or various phenolic compounds [US 4,670,572, US 4,794,191 , ltal Pat. 42508 A789] as the energy mediating groups and polycarboxylic acids
15 as chelating parts. In addition, various dicarboxylate derivatives [US 5,032,677, US 5,055,578, US 4,772,563] macrocyclic cryptates [US 4,927,923, WO 93/5049, EP-A-493745] and macrocyclic Schiff bases [EP-A-369-000] have been disclosed. Also a method for the labelling of biospecific binding reactant such as hapten, a peptide, a receptor ligand, a drug or PNA oligomer with luminescent
20 labels by using solid-phase synthesis has been published [US 6,080,839]. Similar strategy has also been exploited in multilabeling of oligonucleotides on solid phase [US 6,949,639].
Several beads containing lanthanide(NI) chelates as dye molecules have been prepared, most comonly simply by swolling chelates into the poly-
25 mer [Cummins, CM., Koivunen, M. E., Stephanian, A., Gee, S.J., Hammock, B. D., Kennedy, I. M., 2006, Biocensors and Bioelectronics, 21 , 1077]. Since the lanthanide(lll) chelates are not covalently bound to polymer particle, the signal obtained from the particle may decrease as the function of time because of leaking. This problem can be avoided by linking the chelate covalently to the
30 matrix. Indeed, this type of silica [Hai, X., Tan, M., Wang, G., Ye, Z., Yuan, J., Matsumoto, K., 2004, Anal. Sci., 20, 245] and polystyrene [Hakala, H., Sutela, T., Mukkala, V.-M., Hovinen, J., 2006, Org. Biomol. Chem., 1383] based nano- bead has recently been published. However, this strategy requires the use of hydrophilic polymerizable chelates. No methods to prepare particles covalently
35 bound to hydrophilic label molecules have been disclosed.
OBJECTS AND SUMMARY OF THE INVENTION
The main object of the present invention is to provide chelating agents containing a 1 ,2,3-triazolyl subunit and metal chelates thereof, useful for labeling biomolecules and particles for use as probes in time resolved fluo- 5 rescence spectroscopy, magnetic resonance imaging (MRI), single photon emission computed tomography (SPECT) or positron emission tomography (PET).
A particular object of this invention is to provide chelating agent containing a 1 ,2,3-triazolyl subunit which give a very strong fluorescense with dif- 10 ferent chelated lanthanide ions, particularly with europium (III), samarium (III), terbium (III) and dysprosium (III). Such lanthanide chelates are especially useful in multiparameter bioaffinity assays and in high-throughput screening of drug candidates.
A further object of this invention is to provide chelating agents con- 15 taining a 1 ,2,3-triazolyl subunit giving rise to metal chelates of high stability. A particular object is to achieve chelates with strong stability enough for use in in vivo applications, for example in MRI, SPECT or PET applications.
A further object is to provide chelates or chelating agents suitable for labeling of biomolecules or particles in solution exploiting Huisgen's 20 cycloaddition reaction.
Yet another object is to provide chelating agents containing a 1 ,2,3- triazolyl subunit suitable for labeling oligopeptides or oligonucleotides simultaneously with their synthesis on a solid phase.
Yet another object is to provide a solid support conjugated with che- 25 lates, chelating agents or biomolecules according to this invention.
Yet another object is to provide biomolecules and particles conjugated with chelates and chelating agents of this invention.
Thus, according to one aspect this invention concerns an A lanthanide chelate or chelating agent, comprising a 1 ,2,3-triazole subunit, wherein 30 said chelate or chelating agent is represented by formula (I)
A is a reactive group or not present, L is a linker or not present, group G comprises a chelating group having at least two carboxylic acid or phosphonic acid groups, or esters or salts of said acids, and a chromophoric moiety having one or more aromatic units, and G optionally includes a che-
5 lated lanthanide ion Ln3+, characterized in that
(i) in the group G
- the chelating part is attached to an aromatic unit of the chromophoric moiety either directly or via an Λ/-containing hydrocarbon chain,
- the aromatic units are tethered to each other either directly or via 10 N-containtng hydrocarbon chain and
- at least one of the aromatic units are directly tethered to the 1 ,2,3- triazole subunit,
(ii) the linker L is formed from one to ten moieties, each moiety being selected from the group consisting of phenylene, alkylene containing 1-12 15 carbon atoms, ethynydiyl (-C=C-), ethylenediyl (-C=C-), ether (-O-), thioether (-S-), amide (-CO-NH-, -CO-NR'-, -NH-CO- and -N FT-CO-), carbonyl (-CO-), ester {-COO- and -OOC-), disulfide (-SS-), diaza (-N=N-), and tertiary amine, wherein R' represents an alkyl group containing less than 5 carbon atoms,
(iii) the reactive group A is selected from the group consisting of 20 isothiocyanate, haloacetamido, maleimido, dichlorotriazinyl, pyridyldithio, thio- ester, aminooxy, hydrazide, amino, a polymerizing group, and a carboxylic acid or an acid halide or an active ester thereof,
(iv) the lanthanide ion is selected from europium(lll), terbium(lll), samarium(lll) and dysprosium(IM).
25 Another aspect of this inventions invention concerns chelating agent, comprising a 1 ,2,3-triazole subunit, wherein said chelate or chelating agent is represented by formula (I), characterized in that the reactive group A is an amino acid residue -CH(N HR1 )R5 where R1 is a transient protecting group and R5 is a carboxylic acid or its salt, acid halide or an ester. 30 Yet another aspect of this inventions invention concerns chelating agent, comprising a 1 ,2,3-triazole subunit, wherein said chelate or chelating agent is represented by formula (I), characterized in that the reactive group A is
-Y-O-PZ1-O-R4
35 where one of the oxygen atoms optionally is replaced by sulfur,
Z1 is chloro or NR2R3
R4 is a protecting group, R2 and R3 are alkyl groups,
Y is absent or is a radical of a purine base or a pyrimidine base or any other modified base suitable for use in the synthesis of modified oligonu- 5 cleotides, said base being connected to the oxygen atom via either a) a hydrocarbon chain, which is substituted with a protected hy- droxyethyl group, or via b) a furan ring or pyrane ring or any modified furan or pyrane ring, suitable for use in the synthesis of modified oligonucleotides.
10 According to another aspect, this invention concerns a method for the preparation of the agent as defined above, wherein i) a group A-L1= is reacted with a group G-l_2-N3, where A, G, L1 and L2 are as defined above, to give a compound of formula (I), where A-L1- is bound to a carbon atom and G-L2- is bound to the nitrogen atom in the triazole 15 subunit, or ii) a group A-L1-N3 is reacted with a group G-L2=, where A, G, L1 and L2 are as defined above, to give a compound of formula (I), where A-L1- is bound to the nitrogen atom and G-L2- is bound to a carbon atom in the triazole subunit.
20 BRIEF DESCRIPTION OF DRAWINGS
Figure 1 shows emission and excitation spectrum of a luminescent europium(lll) chelate 11a (A) and a luminescent terbium(lll) chelate 11b (B) synthesized according to this invention.
DETAILED DESCRIPTION OF THE INVENTION
25 According to one embodiment, the chelating part in G is attached to the said triazole subunit either (a) via a linker L2 directly or via an /V-containing hydrocarbon chain, or (b) to an aromatic unit of the chromophoric moiety, either directly or via an Λ/-containing hydrocarbon chain.
According to another embodiment, the invention concerns a chelate
30 comprising
- a metal ion,
- a chelating part comprising at least two carboxylic acid or phos- phonic acid groups, or esters or salts of said acids, attached either to an aromatic unit of the chromophoric moiety, either directly or via an Λ/-containing
6
hydrocarbon chain, or where the chelating part is attached directly or via an N- containing hydrocarbon chain to the 1 ,2,3-triazole subunit and
- a group A, tethered to the triazole subunit optionally via a linker L1, said group A being either a reactive group, enabling binding to a biomolecule
5 or to a functional group on a solid phase, or said group A being a radical of a a bioactive molecule or a particle, and
- an optional chromophoric moiety comprising one or more aromatic units.
According to a third embodiment, the invention concerns a particle 10 conjugated with a chelate or a labeled biomolecule according to this invention. According to a fourth embodiment, this invention concerns a labeled oligopeptide, obtained by synthesis on a solid phase, by introduction of an appropriate chelating agent according to this invention into the oligopeptide structure on an oligopeptide synthesizer, followed by deprotection and optionally al- 15 so introduction of a metal ion.
According to a fifth embodiment, this invention concerns a labeled oligonucleotide, obtained by synthesis on a solid phase, by introduction of an appropriate chelating agent according to this invention into the oligonucleotide structure on an oligonucleotide synthesizer, followed by deprotection and op-
20 tionally also introduction of a metal ion.
According to an sixth embodiment, this invention concerns a particle conjugated with the chelating agent according to this invention suitable for use in the synthesis of an oligonucleotide or an oligopeotide.
According to a seventh embodiment, this invention concerns a che- 25 lating agent containing a 1 ,2,3-triazolyl subunit and comprising
- an optional chromophoric moiety, and
- a chelating part comprising at least two carboxylic acid or phos- phonic acid groups, or esters or salts of said acids, attached to an aromatic unit of the chromophoric moiety, either directly or via an Λ/-containing hydro-
30 carbon chain, wherein the aromatic units are tethered to each other via N-containing hydrocarbon chains.
According to an eighth embodiment, this invention concerns bioactive molecules and particles conjugated with the chelating agents or chelates 35 of this invention.
Finally, the invention concerns also a chelate comprising the aforementioned chelating agent and a metal ion.
Chelating agents
Chelating agents and metal chelates comprising a 1 ,2,3-triazole 5 subunit are new. Furthermore, no chelating agents, metal chelates, bϊoactive molecules or particles tethered to metal chelates containing triazole subunits have been disclosed.
The triazole ring can be conjugated directly without any linker L2 to the chromophoric moiety, and thus it is part of the aromatic moiety capable of
10 absorbing light or energy and transferring the excitation energy to the chelated lanthanide ion. fn addition to the triazole subunit, the chromophoric unit may comprise unsubstituted pyridyl groups, pyridyl groups bearing other substitu- ents and/or other aromatic groups.
Alternatively, the 1 ,2,3-triazole subunit is tethered to a linker arm L2.
15 The agent can be formed by a reaction between a chelating agent or a metal chelate tethered to an alkynyl function and a bioactive molecule, a linker molecule or a particle tethered to an azide function. Alternatively, the agent can be formed by a reaction between a chelating agent or a metal chelate tethered to an azide function and a bioactive molecule, a linker molecule
20 or a particle tethered to an alkynyl function. it is well established that Cu(I) catalyzed Huisgen's cycloaddition occurs readily only with primary alkynes. However, the reaction can be performed with non-terminal alkynes using certain organometallic catalysts such as Ru-complexes [Zhang, L., Chen, X., Xue, P., Sun, H.H.Y., Williams, I.D.,
25 Sharpless, K.B., Fokin, V. V., Jia, G., 2005, J. Am. Chem. Soc, 127, 15998]. Furthermore, if the non-terminal alkynes are sterically restricted, the reaction proceeds even without a catalyst [Agard, N.J., Prescher, J.A., Bertozzi, C.R., 2004, J.Am. Chem. Soc, 126, 15046].
The cycloaddition reaction between alkynes and azides catalyzed
30 by Cu+ and Ru(AcO)2(PPh3J2 gives 1 ,4-dϊsubstituted 1 ,2,3-triazoles. The 1 ,5- disubstituted 1 ,2,3-triazoles, in turn, can be prepared using other type of Ru- based catalysts, such as Cp*RuCI(PPh3)2 [Zhang, L., Chen, X., Xue, P., Sun, H.H.Y., Williams, I.D., Sharpless, K.B, Fokin, V.V., Jia, G., 2005, J. Am. Chem. Soc, 127, 15998]. Uncatalyzed cycloaddition gives rise to isomeric mix-
35 tures.
8
In the compounds demonstrated by specific examples herein, the 1 ,4-substituted 1 ,2,3-triazole derivatives have been synthesized. Although this position is believed to be the most preferable, other positions may also be useful for substitution.
5 Although the reactive group A in principle in many applications could be attached directly to the chromophoric group or to the chelating part, it is highly desirable, especially for steric reasons, to have a linker L1 between the reactive group A and the triazole subunit and chromophoric group or chelating part, respectively. The linker is especially important in case the chelate
10 shall be used in solid phase syntheses of oligopeptides and oligonucleotides, but it is desirable also in labelling biomolecules in solution.
According to a preferable embodiment, the reactive group A is selected from the group consisting of isothiocyanate, haloacetamido, maleimido, dichlorotriazinyl, pyridyldithio, thϊoester, aminooxy, hydrazide, amino, a po-
15 lymerizing group, a carboxylic acid or acid halide or an active ester thereof. Particularly in case the chelate or chelating agent shall be attached to mi- croparticle or nanoparticle it is preferable to have a reactive group which is a polymerizing group. In this case the label can be introduced in the particle during the manufacturing of the particles.
20 The linkers are preferably formed from one to ten moieties, each moiety being selected from the group consisting of phenylene, alkylene containing 1-12 carbon atoms, ethynydiyl (-C=C-), ethylenediyl (-C=C-), ether (-O- ), thioether (-S-), amide (-CO-NH-, -CO-NR'-, NH-CO and -NR'-CO-), carbonyl (-CO-), ester (-COO- and -OOC-), disulfide (-SS-), diaza (-N=N-), and tertiary
25 amine, wherein R' represents an alkyl group containing [ess than 5 carbon atoms. In this case one of the linkers L1 and L2 can also be missing.
According to a particularly preferable embodiment, G is one of the following specific structures:
v wherein Z is independently selected from furyl, thienyl, phenyl or phenylethynyl, where phenyl is substituted or unsubstitued, or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to 5 the triazole subunit or to a linker L2 which in turn is tethered to the triazole sub- unit.
In case Z is substituted phenyl, said phenyl is preferably trial koxy- substituted, most preferably trimethoxysubstituted.
10
Chelating agents for use in peptide synthesis
According to one preferred embodiment, the chelating agent according to this invention is suitable for use in the synthesis of an oligopeptide. In this application, the reactive group A is connected to the triazole subunit via 5 a linker L1, and A is an amino acid residue -CH(NHR1JR5 where R1 is a transient protecting group and R5 is a carboxylic acid or its salt, acid halide or an ester. Particularly preferable chelating agents where G is selected from the structures
11
W
wherein Z is independently selected from furyl, thienyl, phenyl or phenylethynyf, where phenyl is substituted or unsubstitued or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to 5 the triazole subunit or to a linker L2 which in turn is tethered to the triazole sub- unit.
Herein L2 is as defined before and the protecting group R1 is selected from a group consisting of Fmoc (fluorenylmethoxycarbonyl), Boc (tert-
12
butyloxycarbonyl), or Bsmoc (1 ,1-dioxobenzo[b]thiophen-2-ylmethyloxycarbon- yl), and R" is an alkyl ester or an allyl ester.
The chelating agent can be introduced into biomolecules with the aid of peptide synthesizer. The chelating agent can be coupled to an amino 5 tethered solid support or immobilized amino acid e.g. by carbodiimide chemistry described in Jones, J., The Chemical Synthesis of Peptides, Oxford Unive- sity Press, Oxford, 1994, (i.e. the carboxylic acid function of the labeling reagent reacts with the amino group of the solid support or amino acid in the presence of an activator). When the condensation step is completed the tran-
10 sient amino protecting group of the labeling reagent is selectively removed while the material is still attached to the solid support (e.g with piperidine in the case of Fmoc-protecting group). Then second coupling of a chelating agent or other reagent (amino acid, hapten) is performed as above. When the synthesis of the desired molecule is completed, the material is detached from the solid
15 support and deprotected. Purification can be performed by HPLC techniques. Finally the purified ligand is converted to the corresponding metal chelate by addition of known amount of metal ion.
Chelating agents for use in oligonucleotide synthesis
According to another preferred embodiment, the chelating agent ac- 20 cording to this invention is suitable for use in the synthesis of an oligonucleotide. In this case the reactive group A is connected to the triazoie subunit via a linker L1, and A is
-Y-O-PZ1-O-R4 where one of the oxygen atoms optionally is replaced by sulfur, Z1 is 25 chloro or NR2R3, R4 is a protecting group, R2 and R3 are alkyl groups, and Y is absent or is a radical of a purine base or a pyrimidine base or any other modified base suitable for use in the synthesis of modified oligonucleotides. Said base is connected to the oxygen atom either via i) a hydrocarbon chain, which is substituted with a protected hydroxyethyl group, or via ii) a furan ring or 30 pyrane ring or any modified furan or pyrane ring, suitable for use in the synthesis of modified oligonucleotides.
The chelating agent can be introduced into oligonucleotides with the aid of oligonucleotide synthesizer. A useful method, based on a Mitsonobu al- kylation (J Org Chem, 1999, 64, 5083; Nucleosides, Nucleotides, 1999, 18,
35 1339) is disclosed in EP-A- 1152010. Said patent publication discloses a method for direct attachment of a desired number of conjugate groups to the
13
oligonucleotide structure during chain assembly. Thus solution phase labeling and laborious purification procedures are avoided. The key reaction in the synthesis strategy towards nucleosidic oligonucleotide building blocks is the aforementioned Mitsunobu alkylation which allows introduction of various chelating 5 agents to the nucleoside, and finally to the oligonucleotide structure. The chelating agents are introduced during the chain assembly. Conversion to the lan- thanide chelate takes place after the synthesis during the deprotection steps.
Normal, unmodified oligonucleotides have low stability under physiological conditions because of its degradation by enzymes present in the
10 living cell. It may therefore desirable to create a modified oligonucleotide according to known methods so as to enhance its stability against chemical and enzymatic degradation. Modifications of oligonucleotides are extensively disclosed in prior art. Reference is made to US 5,612,215. It is known that removal or replacement of the 2'-OH group from the ribose unit in an RNA chain
15 gives a better stability. WO 92/07065 and US 5,672,695 discloses the replacement of the ribose 2'-OH group with halo, amino, azido or sulfhydryl groups. US 5,334,711 discloses the replacement of hydrogen in the 2'-OH group by alkyl or alkenyl, preferably methyl or allyl groups. Furthermore, the in- ternucleotidic phosphodiester linkage can, for example, be modified so that
20 one ore more oxygen is replaced by sulfur, amino, alkyl or aikoxy groups. Preferable modification in the internucleotide linkages are phosphorothioate linkages. Also the base in the nucleotides can be modified.
Preferably Y is a radical of any of the bases thymine, uracil, adenine, guanine, cytosine, 7-deazaadenine or 7-deazaguanine, and said base is
25 connected to the oxygen atom via i) a hydrocarbon chain, which is substituted with a protected hydroxyethyl group, or via ii) a furan ring having a protected hydroxyethyl group in its 4-position and optionally a hydroxy!, protected hydroxy! or modified hydroxyl group in its 2-position.
Preferably a reactive group -Y-O-P(NR2R3J-O-R4 has a structure se-
30 lected from one of the following structures:
14
O O
KJ ,JsJ
DMTrO. I DMTrα I
DMTrd O V^ W>
ay X) JJ / CH3
DMTrO 0 DMTrO ^ DMTrd ^ DMTr0 ?
(HTfeN-'V^™ (H^N-^α^^1 (/-Pr)2N'^O'^'CN {^faN'lV^ΛN
where - is the position of the linker L1 and DMTr is 4,4' dimethoxytrityl.
15
A particularly preferable chelating agent for this use is selected from one of the specific structures disclosed below
W W
Chelates
The chelates comprise a chelating agent as describes above and a chelated metal ion.
In case the chelate is to be used in bioaffinity assays, the chelated metal ion M is preferably a lanthanide, especially europium(lll), samarium(lll), terbiυm(lll) or dysprosium(lll). G in the chelating agent is preferably one of the following:
wherein M is metal and Z is independently selected from furyl, thie- nyl, phenyl or phenylethynyl, where phenyl is substituted or unsubstitued or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to the triazole subunit or to a linker L2 which in turn is tethered to
5 the triazole subunit.
The chelates comprise a chelating agent as describes above and a chelated metal ion.
In case the chelate is to be used in bioaffinity assays, the chelated metal ion M is preferably a lanthanide, especially europium(lll), samarium(lll), 10 terbium(lll) or dysprosium(lll). The chelating agent is preferably one of the preferable agents mentioned above.
The chelates according to this invention can also be used in vivo in MRI applications or in PET applications. A preferable metal to be used in MRI is gadolinium. However, also lanthanides, particularly europium (III), but also 15 other lanthanides such as samarium (III) and dysprosium (III) are useful in MRI appiications. In SPECT applications the most suitable isotyopes are Tc-98m and ln-111. In PET applications a radioactive metal isotope is introduced into the chelating agent just before use. Particularly suitable radioactive isotopes are Ga-66, Ga-67, Ga-68, Cr-51 , ln-111 , Y-90, Ho-166, Sm-153, Lu-177, Er- 20 169, Tb-161 , Dy-165, Ho-166, Ce-134, Nd-140, Eu-157, Er-165, Ho-161 , Eu- 147, Tm-167 and Co-57. In order to obtain very stable chelates, it is preferable to have a chromophoric moiety where there are several pyridyl groups tethered to each other via N-containing hydrocarbon chains.
According to a particularly preferable embodiment, the chelate is 25 one of the following specific structures:
18
Biomolecules
The biomolecule conjugated with a chelating agent or a chelate according to this invention is preferably an oligopeptide, oligonucleotide, nucleoside, nucleotide, nucleoside 5 '-triphosphate, DNA, RNA, modified oligo- or polynucleotide, such as phosphoromonothioate, phosphorodithioate, phos-
19
phoroamidate and/or sugar- or base modified oligo- or polynucleotide, protein, oligosaccaride, polysaccaride, phospholipide, PNA, LNA, antibody, hapten, drug, receptor binding ligand and lectine.
Particle conjugates
5 The chelates, chelating agents and biomolecules according to this invention may be conjugated on a particle. The particle is preferably a particle such as a microparticle or nanoparticle, a slide or a plate.
In case the chelate or chelating agent has a polymerizing group as reactive group, then the chelate or chelating agent may be introduced in the
10 particle simultaneously with the preparation of the particles.
The biomolecule conjugated with the particle, either covalently or noncovalently is preferable a labeled oligopeptide, obtained by synthesis on a solid phase, by introduction of a chelating agent into the oligopeptide structure on an oligopeptide synthesizer, followed by deprotection and optionally intro-
15 duction of a metal ion. Alternatively, the biomolecule conjugated with the particle, either covalently or noncovalently is preferable a labeled oligonucleotide, obtained by synthesis on a solid phase, by introduction of a chelating agent into the oligonucleotide structure on an oligonucleotide synthesizer, followed by deprotection and optionally introduction of a metal ion.
20 The invention will be illuminated by the following non-restrictive Examples.
EXAMPLES
The invention is further elucidated by the following examples. The structures and synthetic routes employed in the experimental part are depicted
25 in Schemes 1-7. Scheme 1 illustrates the synthesis of the chelating agents containing 4-((3-hydroxypropyl)-1 tf-1 ,2,3-triazolyI subunits. The experimental details are given in Examples 1-8. Scheme 2 illustrates the synthesis of various cheating agents with based on pyridine-2,6-diyl)bis(methylenenitrilo)]- tetrakis(acetate).
30 Experimental details are given in Examples 9-11. Scheme 3 illustrates the synthesis of the building block designed for the introduction of lan- thanide chelates to the oligonucleotide structure on solid phase. Experimental details are given in Examples 12-14. Scheme 4 illustrates the synthesis of the lanthanide chelates tethered to alkynyl or azido functions. Experimental detals
35 are given in Examples 15 and 16. Scheme 5 demonstrates the method for co-
20
valent conjugation of azido tethered lanthanide(lll) chelates to alkynyl derivat- ized particles exploiting Huisgen's cycloaddition reaction. Scheme 6 demonstrates the labeling of 3'-O-{5-azidopentyloxymethyl)thymidine 5"-triphosphate [Hovinen, J., Azhayev, A., Azhayeva, E., Guzaev, A, Lόnnberg, H., 1994, J. 5 Chem. Soc. Perkin Trans 1 , 211] with the luminescent europium(lll) chelate tethered to an alkynyl group. Scheme 7 illustrates synthesis of lanthanide(lll) chelates where the 1 ,2,3-triazole subunit is part of the chromophoric moiety. Experimental details are given in Examples 17-19.
Experimental procedures
10 Adsorption column chromatography was performed on columns packed with silica gel 60 (Merck). NMR spectra were recorded either on a Brucker 250 or a Jeol LA-400 spectrometers operating at 250.13 and 399.8 MHz for 1H, respectively. Me4Si was used as an internal reference. Coupling constants are given in Hz. IR spectra were recorded on a Perkin Elmer 2000
15 FT-IR spectrophotometer. Electrospray mass spectra were recorded on a Applied Biosystems Mariner ESI-TOF instrument. Fluorescence spectra were recorded on a PerkinElmer LS 55 instrument. HPLC purifications were performed using a Shimazu LC 10 AT instrument equipped with a diode array detector, a fraction collector and a reversed phase column (LiChrocart 125-3 Purospher
20 RP-18e 5 μm). Mobile phase: (Buffer A): 0.02 M triethylammonium acetate (pH 7.0); (Buffer B): A in 50 % (v/v) acetonitrile. Gradient: from 0 to 1 min 95% A, from 1 to 21 min from 95% A to 100% B. Flow rate was 0.6 mL min'1.
Example 1
The synthesis of tetra-terf-butyl 2,2',2",2'"-{[4'-(4"-ethynylphenyl)- 25 2,2':6',2"-terpyridine-6,6"-diyl]bis(methylenenitrilo)}tetrakis (acetate) (1c).
Tetra-terf-butyl 2,2',2",2'"-{[4'-(4"-bromophenyl)-2,2':6',2"-terpyri- dine-6,6"-diyl]bis(methylenenitrilo)}tetrakis (acetate) (0.71 g, 0.77 mmol), synthesized as disclosed in Peuralahti, J. Hakala, H., Mukkala, V.-M., Hurskainen, P., Mulari, O., Hovinen, J. 2002, Bioconjugate Chem., 13, 870, (Ph3P)2PdCI2 30 (13 mg) and CuI (8 mg) were dissolved in the mixture of THF (3 mL) and TEA (2 mL) an deaerated with argon. Trimethylsilyl acetylene (165 μL, 1.16 mmol) was added , and the mixture was heated overnight at 55 0C, before being cooled to RT and concentrated. The residue was dissolved in dichloro- methane, washed with water and dried over Na2SO4, and concentrated. The 35 residue was redissolved in dichloromethane (25 mL). Tetrabutylammonium
21
fluoride (1.5 eq) was added, and the mixture was stirred for 30 min at RT, before being washed with 10% aq. citric acid, dried over Na2SC>4, and concentrated. Purification on silica gel (eluent PE:EA: TEA 3:5:1 (WWv)) yielded the title compound as an oil. ESI TOF MS for C49H^N5O8 (M+H)+: calcd, 848.46; 5 found, 848.56.
Example 2
The synthesis of tetra-ferf-butyl-2,2',2",2'"-{[6,6'-[(4-ethynylpyra- zole-1 ",3"-diyl)bis(pyridine)-2,2'-diyl]bis(methylenenitrilo)}tetrakis(acetate) 1d.
Tetra-terf-butyl-2,2',2",2'"-{[6,6'-[(4-ethynylpyrazole-1 ",3"-diyl)bis-
10 (pyridine)-2,2'-diyl]bis(methylenenitrilo)}tetrakis(acetate), synthesized as disclosed in Jaakkola, L., Peuralahti, J., Hakala, H., Kunttu, J., Tallqvist, P., Muk- kala, V.-M., Hovinen, J. 2005, Bioconjugate Chem., 16, 700, was converted to the titled compound using the method disclosed in Example 1 but the reaction was performed at ambient temperature. 1H NMR (CDCI3): δ 8.84 (1H, s); 8.06
15 (1 H, d, J 7.4); 8.00 (1 H, d, J 8.0); 7.82 (1 H, t, 7.9); 7.78 (1 H, t, J 7.7); 7.71 (1 H, d, J 7.7); 7.55 (1 H, d, J 7.3); 4.16 (2H, s); 4.05 (2H, s); 3.56 (4H, s); 3.53 (4H, s); 3.25 (1 H, s); 1.48 (18H, s); 1.46 (18H, s). ESI TOF MS for C4IH57N6O8 (M+H)+: calcd, 761.42; found, 761 .51.
Example 3
20 The synthesis of 2,2'-2",2'"-{[4'-(5-ethynyl-2-furyl)-2,2':6',2"-ter- pyridine-6,6'-diyl]bis(methylenenitrilo)}tetrakis(acetate) tetra-fe/f-butyl ester, 1e. 2,2'-2" I2'"-{[4'-(5-bromo-2-furyl)-2,2':6',2"-terpyridine-6,6'-diyl]- bis(methylenenitrilo)}tetrakis(acetate) tetra-terf-butyl ester, synthesized as disclosed in US 2005/0084451 A1 , was converted to the titled compound as dis-
25 closed in Example 1. 1H NMR (CDCI3) 8.71 (2H, s); 8.51 (2H, d, J 7.7); 7.86 (2H, t, J 7.9); 7.72 (2H, d, J 7.7); 7.11 (1 H, d, J 3.5); 6.82 (1 H, d, J 3.5); 4.19 (4H, s); 3.56 (8H, s); 3.53 (1 H, s); 1 .48 (36H, s). ESI TOF MS for C4IH57N6O8 (M+H)+: calcd, 838.44; found, 838.45.
Example 4
30 The synthesis of diethyl 4-(1 -(3-hydroxypropyl)-1 H-1 ,2,3-triazol-4- yl )pyrid ine-2 ,6-d icarboxylate, 2a.
Diethyl 4-ethynylpyridine-2,6-dicarboxylate, 1a, (0.34 g, 0.54 mmol), synthesized as disclosed in Takalo, H., Hanninen, E., Kankare, J., 1993, HeIv. Chim. Acta, 76, 877, and 3-azidopropan-1-ol (55 mg, 0.54 mmol) were dis-
22
solved in DMSO (2 ml_). CuI (11 mg, 0.05 mmol) was added, and the mixture was stirred at 60 C for 1 h before being concentrated in vacuo (oii pump). Purification on silica gel {eluent MeOH: CH2Cb, 5:95, v/v) yielded the title compound. 1H NMR (CDCI3): δ 8.63 (2H, s); 8.27 (1H, s); 4.63 (2H1 t, J 6.8); 4.45 5 (4H, q, J 7.0 ); 1.79 (2H, m); 1.41 (6H, t, J 7.0). ESI TOF MS for Ci6H2IN4O5 (M+H)+: calcd, 349.15; found, 349.15.
Example 5
The synthesis of tetra-tert-butyl 2,2',2",2'"-[4-((3-hydroxypropyl)- 1 HA ,2,3-triazol-4-yl)pyridine-2,6-diyl)bis(methylenenitrilo)]tetrakis(acetate), 2b.
10 Reaction of tetra-terf-butyl 2,2',2",2'"-[4-(ethynylpyridine-2,6-diyl)- bis(methylenenitrilo)]tetrakis(acetate), 1b, synthesized as disclosed in Han- ninen, E., Takalo, H., Kankare, J., 1988, Acta Chem. Scand. Ser B, 42, 614, with 3-azidopropan-1-ol as disclosed in Example 4 yielded the title compound. 1H NMR (CDCI3): δ 8.08 (1 H1 s); 7.95 82H, s); 4.59 (2H1 1, J 6.8); 4.06 (4H, s);
15 3.67 (2H, t, J 5.9); 3.51 (8H1 s); 2.18 (2H, p); 1.45 (36H, s). ESI TOF MS for C36H59N6O9 (M+H)+: calcd, 719.43; found, 719.44.
Example 6
The synthesis of tetra-terf-butyl 2,2',2",2'"-{[4'-(4"-[(1-(3-hydroxy- propyl)-1H-1 ,2,3-triazol-4-yl]phenyl)-2,2':6',2"-terpyridine-6,6"-diyl]bis(methy- 20 lenenitrilo)}tetrakis (acetate) (2c).
Reaction of compound 1c with 3-azidopropan-1-ol as disclosed in Example 4 yielded the title compound. ESI TOF MS for C52H6SN8O9 (M+H)+: calcd, 949.52; found, 949.55.
Example 7
25 The synthesis of tetra-terf-butyl-2,2',2",2'"-{[6,6'-[(4-(4-(1-(3-hyd- roxypropyl)-1H-1 ,2,3-triazol-4-yl)pyrazole-1 ",3"-diyl)bis(pyridine)-2,2'-diyl]bis-
(methylenenitrilo)}tetrakis(acetate) 2d.
Reaction of compound 1d with 3-azidopropan-1-ol as disclosed in
Example 4 yielded the title compound. ESI TOF MS for C44H64N9O9 (M+H)+: 30 calcd, 862.48; found, 862.45. 1H NMR (CDCI3): δ 9.32 (1 H, s); 8.94 (1 H, s)
8.08 (1 H1 d, J 8.0); 7.96 (1 H, d, J 7.9); 7.83 (1 H, t, J 7.4); 7.78 (1 H1 t, J 7.7);
7.61 (1H, d, J 7.3); 7.53 (1H, d, J 7.6); 4.63 (2H, t, J 6.5); 4.22 (2H, s); 4.06
(2H, s); 3.70 (2H1 1, J 5.3); 3.53 (4H, s); 3.49 <4H, s); 2.22 (2H, m); 1.48 (18H, s);
1.46 (18H1 S).
23
Example 8
The synthesis of tetra-terf-butyl 2,2',2",2'"-{[4'-(5-[(1-(3-hyciroxy- propyl)-1H-1 ,2,3-triazol-4-yl]-2-{furyl)-2>2':6' >2"-terpyridine-6,6"-diyl]bis- (methylenenitrilo)}tetrakis (acetate) (2e).
5 Reaction of compound 1e with 3-azidopropan-1-ol as disclosed in
Example 4 yielded the title compound. 1H NMR (CDCI3): 68.75 (2H, s); 8.53 (2H1 d, J 7.9); 8.20 (1 H, s); 7.86 (2H, t, J 7.6); 7.67 (2H, d, J 7.6); 7.22 (1 H1 d, J 3.5); 7.07 (1 H, d, J 3.5); 4.68 (2H1 t, J 6.5); 4.21 (4H1 s); 3.73 (2H, t, J 5.9); 3.59 {8H, s); 2.21 (2H1 p); 1.46 (36H, s). ESI TOF MS for C50H67N8Oi0 (M+H)+: 10 calcd, 939.50; found, 939.49.
Example 9
The synthesis of tetra-ferf-butyl 2,2',2",2'"-[4-((carboxyethyl)-1H- I ^.S-triazol^-yOJpyridine^.e-diylJbisfmethylenenitrilo^tetrakisfacetate), 3a.
Reaction of compound 1b with azidoacetic acid as disclosed in Ex- 15 ample 4 yielded the title compound. 1H NMR (CDCI3): δ 8.51 (1 H, s); 7.60 (2H, s); 4.76 (2H, s); 3.88 (4H, s); 3.39 (8H, s); 2.82 {2H, s); 1.44 (36 H, s). ESI TOF MS for C35H55N6O10 (M+H)+: calcd, 719.40; found, 719.48.
Example 10
The synthesis of tetra-terf-butyl 2,2',2",2"'-[4-((3-aminopropyl)-1H- 20 1 ^.S-triazol^-yOJpyridine^.e-diyObistmethylenenitriloJltetrakisfacetate), 3b.
Reaction of compound 1b with 3-azidopropylamine as disclosed in Example 4 yielded the titfe compound. ESI TOF MS for C36H6ON7O8 (M+H)+: caicd, 718.45; found, 718.41.
Example 11
25 The synthesis of 4-{tetra-terf-butyl 2,2',2",2'"-[4-(3-(1H-1 ,2,3-tri- azol-4-yl))pyridine-2,6-diyl)bis(methylenenitrilo)]tetrakis(acetato)} N-fluorenyl- methyloxycarbonyl phenylalanine, 3c.
Compound 1b was allowed to react with Λ/-fluorenylmethyl- oxycarbonyl 4-azidophenylalanine as disclosed in Example 4. When the reac-
30 tion was completed, all volatiles were removed in vacuo. The residue was dissolved in dichloromethane, washed with 10% aq. citric acid, dried over 4A molecular sieves and concentrated. ESI TOF MS for C57H72N7Oi2 (M+H)+: calcd, 1046.52; found, 1046.51.
24
Example 12
The synthesis of 2'-deoxy-3-(3-azidopropyl)-5'-O-(4,4'-dimethoxy- trityl)uracil, 4.
2'-Deoxy-5'-O-(4,4'-dimethoxytrityl)uracil (0.53 g, 1.0 mmol), 3-azido- 5 propan-1-ol (0.11 g, 1.1 mmol) and triphenylphosphine (0.29, g, 1.1 mmol) were dissolved in dry THF (20 ml_). Diisopropylazodicarboxylate {0.22 μl_, 1.1 mmol) was added in four portions, and the reaction was allowed to proceed overnight at RT. All volatiles were removed in vacuo. Purification on silica gel using diethyl ether as the eluent yielded the title compound. ESI TOF MS for 10 C33H35N5 NaO7 (M+Na)+: calcd, 636.24; found, 636.26. vmax 2098 crτT1 (-N3). 1H NMR (CDCI3): 7.76 (1 H, d, J 8.3); 7.39-7.26 (9H); 6.83 (4H1 d, J 8.7); 6.31 (1 h, t, J 6.2); 5.55 (1 H, d, J 8.3); 4.54 81 H, m); 4.00 (2H, t J 6.1 ); 3.79 (6H1 s); 3.50 (1 H1 m); 3.45 (2H, m); 3.35 (2H, t, J 6.8); 2.44 (1H1 m); 2.26 (1 H1 m); 2.19 (1H, br s9; 1.91 (2H, p).
15 Example 13
The synthesis of 2'-deoxy-5'-O-(4,4'-dimethoxytrityl)-3-{tetramethyl 2,2",2",2'"-[4-(propyl-(1H-1 )2,3-triazol-4-yl)pyridine-2,6-diyl)bis(methyienenit- rilo)]tetrakis(acetato), uracil, 6.
Reaction of tetramethyl 2,2',2",2'"-[4-ethynylpyridine-2,6-diyl)bis-
20 (methylenenitrilo)]tetrakis(acetate), 5, synthesized as disclosed in Kwiatkowski et al, 1994, Nucleic Acids Res., 22, 2604, with compound 4 yielded the title compound. ESI TOF MS for C53H61N8O15 (M+H)+: calcd, 1049.42; found,
1450.87.
Example 14
25 The synthesis of 2,2',2",2'"-{4'-[4-(propargylthioureidophenyl]-
2,2':6',2"-terpyridine-6,6"-diylbis(methylenenitrilo)}tetrakis(acetate) europium- (III), 8a.
Equimolar amounts of 2,2',2",2'"-{4'-[4-isothiocyanatophenyl]- 2,2':6',2"-terpyridine-6I6"-diylbis(methylenenitrilo)}tetrakis(acetate) europium-
30 (III), 7a synthesized as disclosed in US 4859,777, and propargylamine were dissolved in carbonate buffer, pH 9.3 and the reaction was allowed to proceed for 2 h at RT. The product was isolated by precipitation from acetone.
25
Example 15
The synthesis of 2,2',2",2"*-{4'-[4-(azidopropylthioureϊdophenyl]- 2,2':6',2"-terpyridine-6,6"-diylbis(methylenenitrilo)}tetrakis(acetate) europium- (IH), 9a.
5 Equimolar amounts of 7a and azidoproylamine were dissolved in carbonate buffer, pH 9.3 and the reaction was allowed to proceed for 2 h at RT. The product was isolated by precipitation from acetone.
Example 16
The synthesis of 2,2',2",2'"-{4'-[4-propargylthioureidoophenyl]- 10 ethynylpyridine-2,6-diylbis(methylenenitrilo) tetrakis(acetate) europium([ll), 9b.
Reaction of 2,2',2",2'"-{4'-[4-isothiocyanatophenyl]ethynylpyridine- 2,6-diyEbis(methylenenitriIo) tetrakis(acetate) europium(lll), 7b with propargyl- amine as disclosed in Example 14 yielded the title compound.
Example 17
15 The synthesis of of 2,2',2",2'"-[4-((3-hydroxypropyl)-1H-1 ,2,3- triazol-4-yl)pyridine-2,6-diyl)bis(methylenenitrilo)]tetrakis(acetate), europium(lll)
10.
Compound 2b was converted to the title compound using the method disclosed in Takalo, H., Mukkala, V.-M., Mikola, H., Liitti, P., Hemmila, 20 I1 1994, Bioconjugate Chem. 5, 278. Excitation: 277.06 nm; Emission 593.01
616.33 (max), 697.27 nm.
Example 18
The synthesis of 2I2',2",2' "-{[6,6'-[(4-(4-(1-(3-hydroxypropyl)-1f/- 1 ,2,3-triazol-4-yl)pyrazole-1 ",3"-diyl)bis(pyridine)-2,2'-diyI]bis(methylenenit-
25 rilo)}tetrakis(acetate) europium(lll) 11a, 2,2',2",2'"-{[6,6'-[(4-(4-(1-(3-hydroxy- propyl)-1 HA ,2,3-triazol-4-yl)pyrazole-1 ",3"-diyl)bis(pyridine)-2,2'-diyl]bis(met- hylenenitrilo)}tetrakis(acetate) terbium(lll) 11 b and 2,2',2",2' "-{[6,6'-[(4-(4-{1- (3-hydroxypropyl)-1 HA ,2,3-triazol-4-yl)pyrazole-1 ",3"-diyl)bis(pyridine)-2,2'- diyl]bis(methylenenitrilo)}tetrakis(acetate) dysprosium(lll) 11c.
30 The synthesis was preformed as disclosed in Example 17 Compound 11a tR 10.01 min, ESI TOF MS for C34H44EuN10O9 (M+TEA)+: calcd, 889.25; found, 889.18. λmax 324 nm (ε 14371). Excitation/nm 327; Emis- sion/nm, rel. int (%) 593.12 (14), 616.43 (50), 654.12 (3), 692.17 (32). εΦ 2310. τ 1.03 ms.
26
Compound 11b tR 10.07 min, ESI TOF MS for C34H44EUN10O9 (M+ TEA)+: calcd, 895.25; found, 895.27. λmax 324 nm (ε 14429). Excitation/nm 327; Emission/nm, rel. int (%) 491 (21), 544 (55), 587 (15), 623 (8), 647 (2), 669 (1 ) εΦ 10000. τ 2.61 ms. Compound 11c ESI TOF MS for C34H44DyNi0O9 5 (M+TEA)+: calcd, 888.25; found, 899.31. Excitation/nm 328; Emission/nm, rel. int (%) 479 (37), 574 (53), 659 (1.5), 755 (2) εΦ 221. τ 0.01 ms.
Example 19
The synthesis of 2,2' I2",2'"-{[4'-(5-[(1-(3-hydroxypropyl)-1 H-1 ,2,3- triazol-4-yl]-2-(furyl)-2,2':6',2"-terpyridine-6,6"- 10 diyl]bis(methylenenitrilo)}tetrakis (acetic acid) europium(lll) (12).
Compound 2e was converted to the title compound using the method disclosed in Example 17, but using cone, hydrochloric acid instead of
TFA. TOF MS for C34H30EUN8OIO" (M)": calcd, 863.13; found, 863.07. λmax 293 nm (ε 14722). Excitation/nm 327; Emission/nm, rel. int (%) 595 (13), 617 (50),
15 697 (37) εΦ 187; τ 0.71 ms.
69
27
Scheme 2
10
69
Scheme 4
29
Scheme 6
69
Scheme 7
Claims
1. A lanthanide chelate or chelating agent, comprising a 1 ,2,3- triazoie subunit, wherein said chelate or chelating agent is represented by formula (I)
(D wherein
A is a reactive group or not present, L is a linker or not present, group G comprises a chelating group having at least two carboxylic acid or 10 phosphonic acid groups, or esters or salts of said acids, and a chromophoric moiety having one or more aromatic units, and G optionally includes a chelated lanthanide ion Ln3+, characterized in that (i) in the group G
- the chelating part is attached to an aromatic unit of the chromo- 15 phoric moiety either directly or via an Λ/-containing hydrocarbon chain,
- the aromatic units are tethered to each other either directly or via N-containing hydrocarbon chain and
- at least one of the aromatic units are directly tethered to the 1 ,2,3- triazole subunit,
20 (ii) the linker L is formed from one to ten moieties, each moiety being selected from the group consisting of phenylene, alkylene containing 1-12 carbon atoms, ethynydiyl (-C=C-), ethylenediyl (-C=C-), ether (-O-), thioether (-S-), amide (-CO-NH-, -CO-NR'-, -NH-CO- and -NR'-CO-), carbonyl (-CO-), ester (-COO- and -OOC-), disulfide (-SS-), diaza (-N=N-), and tertiary
25 amine, wherein R' represents an alkyl group containing less than 5 carbon atoms,
(iii) the reactive group A is selected from the group consisting of isothiocyanate, haloacetamido, maleimido, dichlorotriazinyl, pyridyldithio, thio- ester, aminooxy, hydrazide, amino, a polymerizing group, and a carboxylic acid
30 or an acid halide or an active ester thereof,
(iv) the lanthanide ion is selected from europium(lll), terbium(lll), samarium(lll) and dysprosium(lll).
2. The lanthanide chelate or chelating agent according to claim 1 , characterized in that G is selected from the group consisting of 32
3. The lanthanide chelate or chelating agent according to claim 1 or 2 characterized in that G is represented by formula (II) 33
5. A chelating agent, comprising a 1 ,2,3-triazole subunit, wherein said agent is represented by formula (I)
***% (l)
10 wherein
A is a reactive group A, L is a linker L or not present, group G comprises a chelating part having at least two carboxylic acid or phosphonic acid esters, and a chromophoric moiety having one or more aromatic units, characterized in that
15 (i) in the group G
- the chelating part is attached to an aromatic unit of the chromophoric moiety either directly or via an Λ/-containing hydrocarbon chain,
- the aromatic units are tethered to each other either directly or via N-containing hydrocarbon chain and
20 - at least one of the aromatic units are directly tethered to the 1 ,2,3- triazole subunit,
(ii) the linker L is formed from one to ten moieties, each moiety being selected from the group consisting of phenylene, alkylene containing 1-12 carbon atoms, ethynydiyl (-C=C-), ethylenediyl (-C=C-), ether (-0-), thioether
25 (-S-), amide (-CO-NH-, -CO-NR'-, -NH-CO- and -NR'-CO-}, carbonyl (-CO-), ester (-C00- and -00C-), disulfide (-SS-), diaza (-N=N-), and tertiary amine, wherein R' represents an alkyl group containing less than 5 carbon atoms,
(iii) the reactive group A is an amino acid residue -CH(NHR1)R5 where R1 is a transient protecting group and R5 is a carboxylic acid or its salt,
30 acid halide or an ester. 34
6. The chelating agent according to claim 5, characterized in that G is selected from the group consisting of
5 wherein Z is independently selected from furyl, thienyl, phenyl or phenylethynyl, where phenyl is substituted or unsubstitued or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to the triazole subunit, and R1 is selected from the group consisting of Fmoc, Boc or Bsmoc, and R" is a an alkyl ester or an allyl ester.
10 7. The chelating agent according to claim 6 characterized in that G is represented by formula (Ha) 35
wherein Z is independently selected from furyl, thienyl, phenyl or phenylethynyl, where phenyl is substituted or unsubstitued or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to the triazole subunit, and R1 is selected from the group consisting of Fmoc, Boc or Bsmoc, and R" is a an afkyl ester or an allyl ester.
8. The chelating agent according to claim 7 characterized in that Z is not present.
10 9. A chelating agent, comprising a 1 ,2,3-triazole subunit, wherein said agent is represented by formula (I)
A-LT
0)
comprising
15 A is a reactive group, L is a linker L or not present, group G comprises a chelating part having at least two carboxylic acid or phosphonic acid esters, and a chromophoric moiety having one or more aromatic units, characterized in that
(i) in the group G
20 - the chelating part is attached to an aromatic unit of the chromophoric moiety either directly or via an Λ/-containing hydrocarbon chain,
- the aromatic units are tethered to each other either directly or via N-containing hydrocarbon chain and
- at least one of the aromatic units are directly tethered to the 1 ,2,3-triazole 25 subunit,
(ii) the linker L is formed from one to ten moieties, each moiety being selected from the group consisting of phenylene, alkylene containing 1-12 carbon atoms, ethynyldiyl (-C=C-), ethylenediyl (-C=C-), ether (-O-), thioether (-S-), amide (-CO-NH-, -CO-NR'-, -NH-CO- and -NR'-CO-), carbonyl (-CO-), 30 ester {-COO- and -OOC-), disulfide (-SS-), diaza (-N=N-), and tertiary amine, wherein R' represents an alkyl group containing less than 5 carbon atoms, 36
(iii) the reactive group A is
-Y-O-PZ1 -O-R4 where one of the oxygen atoms optionally is replaced by sulfur,
Z1 is chloro or NR2R3 5 R4 is a protecting group,
R2 and R3 are alkyl groups,
Y is absent or is a radical of a purine base or a pyrimidine base or any other modified base suitable for use in the synthesis of modified oligonucleotides, said base being connected to the oxygen atom via either 10 a) a hydrocarbon chain, which is substituted with a protected hy- droxyethyl group, or via b) a furan ring or pyrane ring or any modified furan or pyrane ring, suitable for use in the synthesis of modified oligonucleotides.
10. The chelating agent according to claim 9 characterized in that 15 Y is a radical of any of the bases thymine, uracil, adenine, guanine, cytosine,
7-deazaadenine or 7-deazaguanine, and said base is connected to the oxygen atom via i) a hydrocarbon chain substituted with a protected hydroxyethyl group, or
20 ii) a furan ring having a protected hydroxyethyl group in its 4-posi- tion and optionally a hydroxyl, protected hydroxyl or modified hydroxyl group in its 2-position.
11. The chelating agent according to claim 9, characterized in that -Y-O-P(NR2R3J-O-R4 is selected from the group consisting of
25 37
where - is the position of the linker L and DMTr is dimethoxytrityl.
12. The chelating agent according to claim 9, characterized in that
G is selected from the group consisting of
5 wherein Z is independently selected from furyl, thienyl, phenyl or phenylethynyl, where phenyl is substituted or unsubstitued or Z is not present, wherein G is a radical of any of the aforementioned structures and tethered to the triazole subunit, and R" is an alkyl ester of an allyl ester.
13. The chelating agent according to claim 12 characterized in that
10 group G is represented by formula (lib) 38
14. The chelating agent according to cfaim 12 characterized in that Z is not present.
5 15. A biomolecule conjugate comprising a biomolecule conjugated to a lanthanide chelate or chelating agent according to claim 1.
16. The biomolecule conjugate according to claim 15 characterized in that the biomolecule is selected from the group consisting of an oligopeptide, oligonucleotide, nucleoside, nucleotide, nucleo- 10 side 5'-triphosphate, DNA, RNA, modified olϊgo- or polynucleotide, protein, oli- gosaccaride, polysaccaride, phosphoiipide, PNA, LNA, antibody, hapten, drug, receptor binding ligand and lectine.
17. The biomolecule conjugate according to claim 15 characterized in that the modified oligo- or polynucleotide is a phosphoromonothioate, phos-
15 phorodithioate, phosphoroamidate and/or sugar- or basemodified oligo- or polynucleotide,
18. A conjugated particle comprising a particle conjugated to a lanthanide chelate or chelating agent according to any of the claims 1 - 13.
19. The conjugated particle according to claim 18, characterized in 20 that the particle is selected from the group consisting of a nanoparticle, a mi- croparticle, a slide or a plate.
20. A labeled oligopeptide, obtained by synthesis on a solid phase, by introduction of the chelating agent according to claims 5 - 8 into the oligopeptide structure on an oligopeptide synthesizer, followed by deprotection
25 and optionally also introduction of a metal ion.
21. A labeled oligonucleotide, obtained by synthesis on a solid phase, by introduction of the chelating agent according to any of the claims 9 - 13 into the oligonucleotide structure on an oligonucleotide synthesizer, followed by deprotection and optionally also introduction of a metal ion.
30 22. A particle conjugated with an agent according to claim 20 or 21 where the labeled oligopeptide or labeled oligonucleotide is covalently or non- covalently immobilized on said particle. 39
23. The conjugate according to claim 22, wherein the oligopeptide or oligonucleotide is covalently or noncovalently immobilized on the particle, which is selected from the group consisting of a nanoparticle, a microparticle, a slide or a plate.
5 24. A method for the preparation of the lanthanide chelate or chelating agent according to claim 1 or 5 characterized in that i) a group A-L= is reacted with a group G-N3, where A, G, and L are as defined in any of the foregoing claims, to give a compound of formula (I) or (III) where A-L- is bound to a carbon atom and G is bound to the nitrogen 10 atom in the triazole subunit, or ii) a group A-L-N3 is reacted with a group G-=, where A, G, and L are as defined in any of the foregoing claims, to give a compound of formula (I) or (III) where A-L- is bound to the nitrogen atom and G is bound to a carbon atom in the triazole subunit.
15 25. The method according to claim 24 characterized in that the reaction is catalysed by Cu+ and Ru(AcO)2(PPh3)2 to give an agent where the triazole is 1 ,4-disubstituted.
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