WO2007135380A2 - Antiparasitic compounds and compositions - Google Patents

Antiparasitic compounds and compositions Download PDF

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Publication number
WO2007135380A2
WO2007135380A2 PCT/GB2007/001820 GB2007001820W WO2007135380A2 WO 2007135380 A2 WO2007135380 A2 WO 2007135380A2 GB 2007001820 W GB2007001820 W GB 2007001820W WO 2007135380 A2 WO2007135380 A2 WO 2007135380A2
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derivative
formula
halogen
acyl
ori
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PCT/GB2007/001820
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WO2007135380A3 (en
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David Loakes
Kathleen Too
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Medical Research Council
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/40Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
    • A61K31/403Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with carbocyclic rings, e.g. carbazole
    • A61K31/404Indoles, e.g. pindolol
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/4151,2-Diazoles
    • A61K31/4161,2-Diazoles condensed with carbocyclic ring systems, e.g. indazole
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/505Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
    • A61K31/519Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
    • A61K31/52Purines, e.g. adenine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • A61K31/7064Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines
    • A61K31/7076Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines containing purines, e.g. adenosine, adenylic acid
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7042Compounds having saccharide radicals and heterocyclic rings
    • A61K31/7052Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides
    • A61K31/706Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom
    • A61K31/7064Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines
    • A61K31/7076Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines containing purines, e.g. adenosine, adenylic acid
    • A61K31/708Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines containing purines, e.g. adenosine, adenylic acid having oxo groups directly attached to the purine ring system, e.g. guanosine, guanylic acid
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P33/00Antiparasitic agents
    • A61P33/02Antiprotozoals, e.g. for leishmaniasis, trichomoniasis, toxoplasmosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P33/00Antiparasitic agents
    • A61P33/02Antiprotozoals, e.g. for leishmaniasis, trichomoniasis, toxoplasmosis
    • A61P33/06Antimalarials
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D209/00Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom
    • C07D209/02Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring
    • C07D209/04Indoles; Hydrogenated indoles
    • C07D209/30Indoles; Hydrogenated indoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to carbon atoms of the hetero ring
    • C07D209/40Nitrogen atoms, not forming part of a nitro radical, e.g. isatin semicarbazone
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D209/00Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom
    • C07D209/02Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring
    • C07D209/04Indoles; Hydrogenated indoles
    • C07D209/30Indoles; Hydrogenated indoles with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to carbon atoms of the hetero ring
    • C07D209/42Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D473/00Heterocyclic compounds containing purine ring systems
    • C07D473/02Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6
    • C07D473/16Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6 two nitrogen atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D473/00Heterocyclic compounds containing purine ring systems
    • C07D473/02Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6
    • C07D473/18Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6 one oxygen and one nitrogen atom, e.g. guanine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D473/00Heterocyclic compounds containing purine ring systems
    • C07D473/02Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6
    • C07D473/24Heterocyclic compounds containing purine ring systems with oxygen, sulphur, or nitrogen atoms directly attached in positions 2 and 6 one nitrogen and one sulfur atom
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D473/00Heterocyclic compounds containing purine ring systems
    • C07D473/26Heterocyclic compounds containing purine ring systems with an oxygen, sulphur, or nitrogen atom directly attached in position 2 or 6, but not in both
    • C07D473/28Oxygen atom
    • C07D473/30Oxygen atom attached in position 6, e.g. hypoxanthine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D473/00Heterocyclic compounds containing purine ring systems
    • C07D473/26Heterocyclic compounds containing purine ring systems with an oxygen, sulphur, or nitrogen atom directly attached in position 2 or 6, but not in both
    • C07D473/32Nitrogen atom
    • C07D473/34Nitrogen atom attached in position 6, e.g. adenine
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Definitions

  • the present invention relates to methods of inhibiting the replication of parasites, pharmaceutical compositions for use in inhibiting the replication of parasites, and the use of various compounds in the preparation of medicaments to inhibit parasite replication and to certain novel compounds per se.
  • the transporters of nucleobases and nucleosides into the parasitic organism have been intensely studied in recent years.
  • the transporters of which there may be one or several in a particular parasite, represent a major therapeutic target [de Koning, H.P. et al FEMS Microbiology Reviews, (2005), 29, 987; el Kouni, M.H. (2003), Pharmacol. Therapeutics, 99, 283]. They may also, in certain cases, transport other presently used therapeutic agents, leading to an anti-parasitic effect.
  • the present invention concerns, inter alia, purine and purine-related compounds that may act by inhibiting transporter uptake of host purines and/or by transport into the cell to interact with the protozoan metabolic systems [e.g. Klinkert, M.-Q. and Heussler, V., (2006), Mini-Reviews in Med. Chem., 6, 131; Jadhav, A.L. et al, (1979), Biochem. Pharmacol, 28, 1057], or possibly by as yet undiscovered mechanisms. -
  • the present invention is directed to, inter alia, purine and bicyclic azole analogues, and their therapeutic uses.
  • the invention provides for use purine analogues of general formula I, defined below, in the manufacture of a medicament to treat and/or prevent a parasitic (especially protozoal) infection or infestation in a mammalian subject;
  • X 4 N or CH or C-NO 2 or C-NRiR 2 or an amidine derivative or a guanidinium derivative; ;
  • R 1 , R 2 , R 3 are independently selected from the group consisting of H or (optionally substituted) alkyl or alkenyl or alkynyl or aryl or aralkyl, where the substituents may be selected from H, OH, NH 2 , halogen, N 3 , CN, CHO, COOR, C0NR' 2 , OR, NR' 2 , SR,
  • NR 1 NR 2 NR 1 OR 1 or NO 2 , where R is alkyl, alkenyl, alkynyl, aralkyl, acyl or sulfonyl;
  • Z H or (optionally substituted) alkyl or alkenyl or alkynyl or aralkyl or a ⁇ -D-linked sugar derivative of general formula II:
  • B is the nucleobase from Formula I;
  • X 7 CH 2 or O or NR 1 or S;
  • R 4 H or OH or OR 1 or halogen or azide or a phosphate derivative
  • R 5 H or F Or CH 3 ;
  • R 7 H or halogen or R 1 or a derivative of an amino acid or PO 3 H 2 or P 2 O 6 H 3 or P3O9H4 or a masked phosphate derivative.
  • X 1 is preferably CH.
  • X 2 is preferably N.
  • X 5 Xg is preferably selected from the group consisting of -
  • Y 1 is H or NH 2 and X 1 is CH.
  • Y 1 is H or KfH 2 and X 2 is N.
  • X 1 is CH and X 2 is N.
  • Y 1 is H or NH 2
  • Xi is CH and X 2 is N.
  • Y 1 is H or NH 2
  • X 1 is CH
  • X 2 is N
  • X 5 X 6 is selected from the group consisting of -NH-NH 2 , -NH-OH and ⁇ N(alkyl)-NH 2 .
  • the invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a therapeutically or prophylactically effective amount of a compound as defined in the first aspect, or a pharmaceutically acceptable ester or salt thereof, preferably admixed with a further therapeutically active agent effective in the prevention or treatment of protozoal infections, with at least one pharmaceutically acceptable carrier, diluent or excipient.
  • the invention provides a method of making an anti-protozoal pharmaceutical composition for administration to a mammalian subject, the method comprising the step of mixing a therapeutically effective amount of a compound as defined hi the first aspect, or a pharmaceutically acceptable ester or salt thereof, with at least one pharmaceutically acceptable carrier, diluent or excipient, and preferably also with at least one further therapeutically active agent effective hi the prevent or treatment of protozoal infections.
  • the invention provides a method of preventing or treating a parasitic (especially protozoal) infection or infestation in a mammalian subject, the method comprising the step of administering an active agent and/or a pharmaceutical composition in accordance with the previous aspects of the invention.
  • the various aspects of the invention defined above relate generally to the prevention and/or treatment of protozoal infections or infestations (or compositions useful therein) in a mammalian subject.
  • the mammalian subject is a human, but it may also be, for example, a domesticated livestock animal such as a cow, goat, sheep or the like, or a companion animal such as a dog or cat.
  • the invention concerns protozoal infections in general, but especially those of man, such as those caused by Plasmodium spp., Leishmania sp. and Tiypanosomes.
  • the invention particularly relates to methods and compositions for the prevention and/or treatment of malaria.
  • Efficacy of the methods/compositions may readily be determined using, for example, an assay method along the Hues described herein or by any other assay method, many of which are well-known to those skilled in the art.
  • a positive response includes, for example, a reduction in parasite numbers when active agent is administered in vivo or in an in vtiro assay and/or a reduction in the amount of one or more parasite-specific antigens, which can be readily measured by standard techniques such as ELISA, ELISpot assay, FACScan etc.
  • a "therapeutically effective amount” is an amount of antiprotozoal agent (or composition containing the agent) which elicits a detectable positive response.
  • a “prophylactically effective amount” is an amount which results in a detectable reduction in parasite numbers and/or severity of one or more symptoms in a subject, following exposure to a parasitic protozoal organism, compared to an untreated subject exposed to the same dose of organisms.
  • nucleobase refers to a compound that contains a ring structure containing atoms in addition to carbon, such as sulfur, oxygen or nitrogen as part of the ring. They may be either simple aromatic rings or non-aromatic rings. Positions of the ring may be optionally substituted independently with, e.g. hydroxy, oxo, amino, imino, alkyl, bromo, chloro, cyano, azido and nitro. Included within this class of substitutents are purines and indoles (X 3 ,
  • nucleoside refers to a compound composed of any pentose or modified pentose moiety attached to a specific position of a nucleobase or to positions 7-, 8- or 9- of a purine or to the equivalent position in an analogue, and for present purposes refers, exclusively to a D-nucleoside in the ⁇ configuration, unless the context dictates otherwise. Any nucleosides having the ⁇ and/or L configuration are outside the scope of the claims of the present application.
  • nucleotide refers to a phosphate ester substituted on the 5'-position of a nucleoside and includes diphosphates, triphosphates, protected monophosphates and analogues thereof.
  • purine refers to nitrogenous bicyclic or polycyclic heterocycles containing at least one six and one five member ed ring.
  • D-nucleoside used in the present invention describes nucleoside derivatives that have the D-ribose sugar moiety like those found in natural nucleosides such as adenosine.
  • indicates the specific stereochemical configuration of a substituent at an asymmetric carbon atom in a chemical structure as drawn. In this specification it refers to the orientation of the glycosidic bond.
  • the compounds described herein are all in the D- furanosyl configuration.
  • protecting group refers to a chemical group that is added to a heteroatorn, such as O, S, N or P, to prevent its further reaction during the course of derivatisation of other moieties in the molecule in which the heteroatom is located.
  • a heteroatorn such as O, S, N or P
  • a wide variety of protecting groups are known to those skilled in the art of organic synthesis.
  • masked phosphate derivative is a modified phosphate group in which the negative charge(s) which would normally be present in an unmodified phosphate group are reduced or (more preferably) entirely neutralized by additional moieties. This has the benefit of facilitating transport of compounds comprising the modified phosphate group across a lipid membrane (e.g. across a cell membrane).
  • masked phosphate derivatives are bis-POM/bis-POM PMEA (see Delaney et al, 2001 Antiviral Chemistry and Chemotherapy 12, 1-35), cyc/ ⁇ Sal (Meier et al, Eur. J. Org. Chem. 1998, 837) and SATE (Lefebvre et al, J Med. Chem., 1995, 38, 394103950).
  • SATE is an abbreviation of S-acyl thioethyl).
  • tautomer refers to functional groups that are able to undergo formal migration of a hydrogen atom accompanied by a switch of adjacent conjugated double bonds.
  • the analogues can, depending on the constraints of the immediate environment (e.g. as an enzyme substrate or by interaction with other biomolecules), act as either a 'guanosi ⁇ e' or an 'adenosine' derivative.
  • alkyl refers to methyl, ethyl, n-propyl, isopropyl and higher carbon chains of any length, though one to six carbon atoms are preferred, and one to three carbon atoms especially preferred.
  • the term is further exemplified to a cyclic, branched or straight chain.
  • substituted alkyl refers to an alkyl chain as defined above which can be further modified by a heteroatom within, where either the heteroatom is part of the chain (e.g. an ether or an amide linkage), or where the heteroatom does not form part of the chain.
  • alkenyl refers to carbon chains of any length, though two to six carbon atoms are preferred (and two to three carbon atoms are especially preferred), containing one or more carbon-carbon double bond.
  • the term is further exemplified to a cyclic, branched or straight chain.
  • substituted alkenyl refers to a ⁇ alkenyl chain as defined above which, can be further modified by a heteroatom within where either the heteroatom is part of the chain (e.g. an ether or an amide linkage), or where the heteroatom does not form part of the chain.
  • alkynyl refers to carbon chains of any length, though two to six carbon atoms are preferred (and two to three carbon atoms especially preferred), containing one or more carbon-carbon triple bond.
  • the term is further exemplified to a cyclic, branched or straight chain.
  • substituted alkynyl refers to an alkynyl chain as defined above which can be further modified by a heteroatom within where either the heteroatom is part of the chain (e.g. an ether or an amide linkage), or where the heteroatom does not form part of the chain.
  • aryl refers to an unsaturated aromatic carbocylic ring, which may be composed of a single ring (e.g. phenyl) or condensed rings (e.g. naphthyl), which can optionally be substituted by further substituents such as hydroxy], chloro, cyano and nitro.
  • alkaryl or "arylalkyl” refers to any combination of alkyl, alkenyl or alkynyl with aryl susbstitutions, which can optionally be substituted • by further substituents such as hydroxy! chloro, cyano and nitro.
  • the compounds of formulae I and IA-E may have multiple asymmetric centres. Accordingly they may be prepared in either optically active form or as a racemic mixture.
  • the scope of the invention as described and claimed encompasses the individual optical isomers and non-racemic mixtures thereof as well as the racemic forms of the compounds.
  • a “pharmaceutically acceptable salt” may be any suitable salt derived from inorganic and organic acids and bases.
  • Formula IA compounds are 6-substituted purine derivatives having the structure:
  • X2.1 CH or N or S or S-Me or C-halogen or CRi ; ;
  • B is the nucleobase from Formula IA;
  • R 5 .i is H or F or CH 3 ;
  • R 4 J and R ⁇ .i are independently selected from H or OH or F;
  • R. 7 .1 H or PO3H 2 or P 2 O 6 H 3 or P3O 9 H 4 or a methylene derivative OfPaO 6 H 3 or P3O 9 H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH 2 ).
  • X 2 .1 CH or N or C-halogen or CRi;
  • X 6-1 OR 1 or O-acyl or 0-S(O) 2 R 1 or NR 1 R 2 or NH-acyl or NH-OS(O) 2 R 1 or NH-S(O) n R 1 where n — 0-2 or Xs -1 Xe -1 is a hydrazone derivative or an oxime derivative but X 5-1 and X 6 ⁇ cannot both be O;
  • Z 1 H or Formula IIA in the ⁇ -configuration; and if present,
  • R 5-1 is H or CH 3 ;
  • R 7-1 H or PO 3 H 2 or P 3 O 9 H 4 or a masked phosphate.
  • compounds of use in the invention are in accordance with formula IB.
  • Formula IB compounds are 7-substituted (purine numbering) purine derivatives having the structure:
  • Xi .2 is N or CH
  • Ri.2 is O or ORi or S or SRi or NRiR 2 or halogen;
  • Z 1-2 H or Formula DA in the ⁇ -configuration; where B is the nucleobase from Formula IB;
  • R 5-1 is H or F or CH 3 ;
  • R 4 . 1 and R5.1 are independently selected from H or OH or F;
  • R 7-1 H or PO 3 H 2 or P 2 O 6 H 3 or PsO 9 H 4 or a methylene derivative Of P 2 O 6 H 3 or P 3 OgH 4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH 2 ).
  • X 6-2 is ORi or O-acyl or 0-S(O) 2 Ri or NR 4 R 2 or NH-acyl or NH-OS(O) 2 Ri or NH-S(O) 2 Ri or X5.2X6.2 is a hydrazone derivative but X5.1 and X 6 .i cannot both be O;
  • Ri -2 is O or ORi or NRiR 2 or halogen
  • Zi -2 H or Formula DA in the ⁇ -configuration; and, if present,
  • R 5-I is H or CH 3 ;
  • R 7-1 H or PO 3 H 2 or P3O 9 H4 or a masked phosphate.
  • compounds of use in the invention are in accordance with formula IC.
  • Formula IC compounds are 2-substituted purine derivatives having the structure:
  • X 2 . 3 is CH orN
  • Ri.3 is O or OR 1 or S or SRi or NRiR 2 or halogen;
  • Z 1-3 H or Formula IBB in the ⁇ -configuration; where B is the nucleobase from Formula IC;
  • R 4-I and Rg.i are independently selected from H or OH or F;
  • R 7. i H or PO 3 H 2 or P 2 O O H 3 or P 3 OgH 4 or a methylene derivative OfP 2 OsHs or P3O 9 H4 or a masked phosphate or aphosphonate derivative (5'-0 replaced with CH 2 ).
  • R 1.3 is O or ORi or NRiR 2 or halogen
  • Z 1 . 3 H or Formula IBB in the ⁇ -configuration; where B is the nucleobase from Formula IC
  • R 7 . ! H or PO 3 H 2 or P 3 O 9 HU or a masked phosphate.
  • Formula ID compounds are S'- ⁇ -modified ⁇ -D-purine derivatives having the structure:
  • Xi.s is CH orN
  • X 2 . 5 is CH or N
  • Ri . 5 is O or OR 1 or S or SR 1 or NR 1 R 2 or halogen;
  • R 4-5 is H or OH or F
  • R 6-5 is H or OH or F
  • R 7.5 is acyl or alkyl or an amino acid such as homocysteine or a derivative of an amino acid such as butanoic acid. (R 1 and R 2 , if present, are as defined previously in formula I).
  • R L5 is O or OR 1 or NR 1 R 2 or halogen
  • R 7 . 5 is acyl or alkyl or an amino acid such as homocysteine or a derivative of an amino acid such as butanoic acid.
  • compounds of use in the invention are in accordance with formula IE.
  • Formula IE compounds are modified bicyclic azole derivatives having the structure:
  • X 4- O is CH or C-NO 2 or C-NRiR 2 or an amidine derivative or a guanidinium derivative;
  • X 5 . 6 is H or NH 2 or O or OR 1 or S or SRi;
  • R 8 if present, is CONHR 1 or CONRiNHR 2 or CONRiOR 2 ;
  • Y 6 is H or NH 2 or NHRi or N 3 or halogen or O or ORi or S or SRi or CRiR 2 R 3 ;
  • Zi.6 is H or Ri or Formula UA in the ⁇ -configuration where B is the nucleobase IE;
  • R 5 .i is H or F or CH 3 ;
  • R 4 . i and Rg. i are independently selected from H or OH or F;
  • R 7 .i H or PO 3 H 2 or P 2 O 6 H 3 or P3O9H4 or a methylene derivative of P 2 O ⁇ H 3 or P 3 OgH 4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH 2 ).
  • Ri, R 2 and R 3 if present, are as defined previously in formula I).
  • X4. 6 is CH or C-NO 2 or C-NRiR 2 ;
  • X5. 6 is H or NH 2 or O or ORi or S;
  • Yg is H or NHRi or N 3 or halogen or O or ORi;
  • Zu is H or Ri or Formula IIA in the ⁇ -configuration where B is the nucleobase IE;
  • R 7 .i H or PO 3 H 2 or P 3 O9H4 or a masked phosphate.
  • the invention provides a novel purine nucleobase/nucleoside/nucleotide analogue, according to one of the general formulae IB, IC or IE, as defined previously.
  • the compound may be provided in substantially pure form (at least 50% w/w, preferably at least 75% w/w purity).
  • the invention provides a pharmaceutical composition comprising one or more compounds in accordance with the fifth aspect, in admixture with a pharmaceutically acceptable carrier, diluent or excipient.
  • the composition may additionally comprise one or more further conventional, known antiprotozoal compounds.
  • the invention provides for use of a compound in accordance with the fifth aspect defined above, in the manufacture of a medicament to treat and/or prevent a parasitic, especially a protozoal, infection or infestation in a mammalian subject.
  • the invention also provides a method of making a pharmaceutical composition, comprising mixing one or more compounds, hi accordance with the fifth aspect of the invention defined above, with a pharmaceutically acceptable carrier, diluent, or excipient (and optionally with one or more further anti-protozoal compounds); and a method of treating and/or preventing a protozoal infection or infestation in a mammalian (preferably human) subject, the method comprising the step of administering to the subject a therapeutically or prophylactically effective amount of a compound hi accordance with the fifth aspect of the invention defined above.
  • composition may be made, formulated and administered generally as described elsewhere in this specification.
  • compositions containing compounds according to formula I and especially according to one of formulae IA-IE may be used to treat a variety of conditions, and in fact any condition which responds positively to the administration of one or more of the compounds.
  • compounds of the invention may be used to treat an infection or an infestation of protozoal origin.
  • compositions in accordance with the invention may be especially useful in treating malarial diseases caused by infection with strains of Plasmodium which are substantially resistant to chloroquine.
  • Infestations contemplated to be treated with the compounds of the present invention include protozoan infestations as well as helminth and other parasitic infestations.
  • Still other contemplated uses of the compounds according to the present invention include use as intermediates in the chemical synthesis of other nucleoside or nucleotide analogues which are, in turn, useful as therapeutic agents or for other purposes.
  • the most preferred uses according to the present invention are those in which the active compounds are relatively less cytotoxic to the non-target host cells and relatively more active against those of the protozoal target.
  • compositions according to the present invention may be administered in any appropriate formulation and under any appropriate protocol.
  • administration may take place orally, parenterally (including subcutaneous injections, intravenous injections, intramuscularly, by intrasternal injection or by fusion techniques), by inhalation spray, topically or rectally and so forth, and in dosage unit formulations containing conventional non-toxic pharmaceutically acceptable carriers and vehicles.
  • compositions according to the present invention can be formulated in admixture with a pharmaceutically acceptable carrier, for example the compounds of the present invention can be administered orally as pharmacologically acceptable salts.
  • Compounds of the present invention may also be administered intravenously in physiological saline solution (e.g. buffered to a pH of about 7.2 to 7.5, conventional buffers such as phosphates or bicarbonates or citrates could be used for this purpose).
  • physiological saline solution e.g. buffered to a pH of about 7.2 to 7.5, conventional buffers such as phosphates or bicarbonates or citrates could be used for this purpose.
  • physiological saline solution e.g. buffered to a pH of about 7.2 to 7.5, conventional buffers such as phosphates or bicarbonates or citrates could be used for this purpose.
  • physiological saline solution e.g. buffered to a pH of about 7.2 to 7.5, conventional buffers such as phosphate
  • the modification of the present compounds to render them more soluble in water or other vehicle may be easily accomplished by minor modifications, such as salt formulation or esterification etc, according to the knowledge of those skilled in the art.
  • Those skilled in the art may also modify the route of administration in order to manage the pharmacokinetics of the compounds described in this specification for maximal beneficial effect in patients.
  • the pro-drug form of the compounds described in this specification in particular acylated derivatives, pyridine esters and various salt forms of the compounds are preferred.
  • One skilled in the art will recognise readily how to modify the present compounds to pro-drug forms to facilitate delivery of active compounds to a target site within the host organism or patient.
  • One skilled in the art will also take advantage of favourable pharmacokinetic parameters of the pro-drug forms, where applicable, to deliver the present compounds to a targeted site within the host organism or patient to maximise the therapeutic effect of the compound.
  • Combination therapies according to the present invention comprise the administration of at least one compound of the present invention or a functional derivative thereof with at least one other pharmaceutically active ingredient.
  • the said at least one other pharmaceutically active ingredient may be a conventional, known antiprotozoal agent or may be a compound in accordance with the present invention.
  • the active ingredient(s) and pharmaceutically active agents may be administered separately or together, and when administered separately this may occur substantially simultaneously or separately in any order.
  • the amounts of the active ingredient(s) and pharmaceutically active agent(s) and the relative timings of administration will be chosen in order to achieve the desired combined therapeutic and/or prophylactic effect.
  • the combination therapy involves the administration of one compound of the present invention or a functional derivative thereof and one the agents mentioned herein below.
  • Such further therapeutic agents which are effective for the treatment of protozoal infections or associated conditions include chloroquine, pyrimethamine, cycloguanil, doxycycline, mefloquine, primaquin, diminazene, isometamidium, or artemisinin or derivatives thereof.
  • Certain compounds according to the present invention may be effective for enhancing the biological activity of certain other agents according to the present invention (or otherwise) by reducing the metabolism or inactivation of other compounds and as such may be co-administered for this intended effect.
  • a therapeutically and/or prophylactically effective amount will vary with the infection or condition to be treated, the degree of its severity, the treatment regimen employed, the pharmacokinetics of the agent used as well as the patient to be treated.
  • Effective dosages may range from lmg/kg of body weight or less to 25mg/kg of body weight or more.
  • effective dosage of the present compound(s) ranges from less than lmg/kg to 25mg/kg of body weight of the patient, depending upon the compound used, the condition or infection treated and the route of administration.
  • This dosage range generally produces effective blood level concentrations of active compound ranging from 0.04 to about 100 micrograms/cc of blood in the patient. It is contemplated though that an appropriate regimen may be developed by administering a small amount, and then increasing the amount until either the side effects become unduly adverse, or the intended effect is achieved.
  • Administration of the active compound may range from continuous (intravenous drip) to several oral administrations per day, and may include oral, parenteral, intramuscular, intravenous, sub-cutaneous, transdermal (which may include a penetration enhancement agent), buccal, topical and suppository administration, amongst other routes of administration.
  • a therapeutically and/or prophylactically effective amount of one or more of the compounds according to the present invention is preferably intimately admixed with a pharmaceutically acceptable carrier according to conventional pharmaceutical compounding techniques to produce a dose.
  • a carrier may take a wide variety of forms depending upon the form of the preparation desired for administration, e.g. oral or intravenous.
  • any of the usual pharmaceutical media may be used.
  • suitable carriers and additives including water, glycols, oils, alcohols, flavouring agents, preservatives, colouring agents and the like may be used.
  • suitable carriers and additives include sugar carrier such as dextrose, mannitol, lactose and related carriers, starches, diluents, granulating agents, lubricants, binders, disintegrating agents and the like may be used. If desired, the tablets or capsules may be enteric-coated or sustained release by standard techniques.
  • the carrier will usually comprise sterile water or aqueous sodium chloride solution, though other agents including those which aid dispersion may be included. Where sterile water is used and to be maintained as sterile, the compositions and carriers must also be sterilized. Injectable suspensions may also be prepared using liquid carriers, suspending agents and the like may be employed.
  • Figure Ia shows the tautomerism of N ⁇ -amino or ⁇ -hydroxy derivatives
  • Figure Ib shows the conventional numbering adopted to number the atoms in the purine bycyclic structure
  • Figure 2 shows the structure of various compounds displaying activity against trypanosomes or Leishmanial
  • Figure 6 shows structures of various pyrrolopyrimidine nucleoside and nucleobase analogues according to general formula IA;
  • Figure 7 shows structures of various pyrazolopyrimidine nucleoside and nucleobase analogues according to general formula IB;
  • Figure 8 shows structures of various purine nucleoside and nucleobase analogues according to general formula IC
  • Figure 9 shows structures of various purine nucleoside analogues according to general formula ID
  • Figure 10 shows structures of purine nucleoside analogues according to general formula IE.
  • ch ⁇ baudi AS parasitized red cells and treated subcutaneously (s.c.) or orally (p.o.) with 0.2 ml of a solution of the test compounds two hours (day 0) and on days 1, 2, 3 and 4 post-infection, at a dose of 30mg test compound per Kg body weight.
  • Parasitaemia was determined by microscopic examination of Giemsa stained blood films taken on day 5 post infection. Microscopic counts of blood films from each mouse were processed using MICROSOFT® EXCEL (Microsoft Corp.) and expressed as percentages of inhibition from the arithmetic mean parasitaemias of each group in relation to the untreated group. Dose response curves were obtained and ED50 and ED 9 0 values calculated.
  • P. falciparum human malaria
  • rodent malaria strains cannot be maintained in in vitro cultures, although they can be cultured for a short period to do uptake experiments.
  • the Trypanosoma cruzi (MHOM/CL/OO/Tulahuen) transfected with ⁇ -galactosidase (Lac Z) gene was used (F. S. Buckner et al, Antimicrob. Agents Chemother., 1996, 40, 2592).
  • the strain was maintained on an L-6 rat skeletal myoblast cell line (obtained from European Collection of Animal Cell Cultures, ECACC, Salisbury, UK) cell-layer in RPMI 1640 medium, supplemented with 10% heat inactivated foetal calf serum (FCS). All cultures and assays were conducted at 37°C under an atmosphere of 5% CO 2 /95% air mixture.
  • CDl Primary peritoneal mouse
  • the substrate CPRG/ Nonidet 50 ⁇ l was added to all wells; medium was not removed prior to this. A colour reaction became visible within 2-6 h, which was read photometrically at 540nm on a spectrophotometer.
  • the results were expressed as % reduction in ⁇ -galactosidase activity compared to control wells, normalised with uninfected macrophages. This is related to a previously established parasite number to ⁇ -galactosidase signal slope. Data were transferred into a graphic programme, dose - response inhibition curves are determined using MSExcelfit and IC50 values were calculated.
  • the compounds were tested, in triplicate, at 4 concentrations (30 - 10 - 3 - 1 ⁇ g/ml).
  • Benznidazole® (Roche) was included as the reference drug and has an IC 5 0 value in the range of 0.5 - 1.5 ⁇ g/ml.
  • the bloodstream form trypomastigotes were maintained in MEM medium with Earle's salts supplemented with 25 mM HEPES, lg/1 additional glucose, lOml/1 MEM non-essential aminoacids (10Ox), 0.2 mM 2-mercaptoethanol, 2mM Na-pyravate, O.lmM hypoxanthine, 0.05mM bathocuprionedisulphomc acid, 0.15mM L-cysteine and 15% heat inactivated, foetal calf serum. All cultures and assays were conducted at 37 0 C under an atmosphere of 5% CO 2 /95% air mixture. Drug sensitivity assays
  • Assays were performed in sterile 96-well microtiter plates, each well containing 100 ⁇ l of parasite culture (1 x 10 4 bloodstream forms) with or without serial drug dilutions at 37°C for 72 h in 5% CO 2 .
  • the highest concentration for the test compounds was 30 ⁇ g/ml.
  • Each drug was tested in triplicate. A 3 -fold serial dilution was performed down to a suitable concentration to obtain an IC 50 value.
  • Initial testing was conducted at 30, 10, 3 and 0.1 ⁇ g/ml.
  • the positive control drug was Pentamidine, which was diluted down to 0.0001 ⁇ g/ml (12 dilutions). Negative control wells were without drug, blanks were medium only.
  • MIC minimum inhibitory concentration
  • a preliminary screen used the Trypanosoma brucei rhodesiense STIB 900 strain.
  • the compounds were tested at 4 concentrations (drug concentration range from 30 ⁇ g/ml to 1 ⁇ g/ml in 3-fold dilutions).
  • pentamidine had an ED 50 value of 0.1 to 0.02ng/ml.
  • Leishmania donovani MHOM/ET/67/HU3 strain also known as LV9 or L82 was used. The strain was maintained in the Syrian Hamster (Mesocricetus auratus). Amastigotes were collected from the spleen of an infected hamster and spleen parasite burden was assessed using the Stauber technique and by ThomaTM haemocytometer. Primary peritoneal mouse (CDl) macrophages were collected by lavage, two days after induction with i.p. injection of 2ml 2% soluble starch. All cultures and assays were conducted at 37°C under an atmosphere of 5% CO 2 /95% air mixture.
  • Assays were performed in sterile 16-well tissue culture slides. 100 ⁇ l of RPMI1640 medium, supplemented with 10% heat inactivated fetal calf serum containing 4xlO 5 /ml peritoneal macrophages were added/well and left for 24 hours at 37 0 C in 5% 00 ⁇ 195% air mixture. After this period lOO ⁇ l of amastigotes, suspended in the same medium, were added at a given ratio of 7 amastigotes: 1 macrophage. After a further 24 h, prior to the addition of drug, one slide was methanol fixed and Giemsa stained to determine a suitable infection level.
  • parasite growth was microscopically assessed after methanol fixation and staining with a 10% Giemsa solution.
  • the levoi of infection/well was evaluated by counting the number of infected macrophages per 100 macrophages.
  • Parasite growth was compared to untreated control wells (100% parasite growth). The results were expressed as % reduction in parasite burden compared to control wells. Data were analysed by Microsoft xl/fit and ED 50 /ED 90 (with 95% confidence limits) values determined.
  • Pentostam® sodium stibogluconate
  • Sodium stibogluconate normally gives an ED 50 value of between 5-10 ⁇ g Sb7ml.
  • compounds according to the present invention were synthesised by reaction of an appropriate hydroxylamine derivative or hydrazine derivative with a halogeno-substituted purine or purine analogue.
  • High resolution mass spectra were recorded on a Bio-Apex H FT- ICR spectrometer.
  • 1 H-Nuclear Magnetic Resonance (NMR) spectra were recorded at 300 MHz on a Bruker DRX300 instrument whilst 13 C-NMR spectra were recorded at 125 MHz on a Bruker DRX500 instrument.
  • deuterated MeOH was used as the n.m.r. solvent with tetramethylsilane (TMS) as the internal standard.
  • ether refers to diethyl ether. All compounds are named according to the IUPAC system and were obtained using the ACD/ILAB web service (http : //www, acdlab s . com) .
  • 6-(l-Methylhydrazino)-9Zr-purine (JA35) (A. Giner-Sorolla et al, J. Med. Chem., 1968, 11, 521)
  • 6-chloropurine (0.2O g, 1.29 mmol)
  • JV- methylhydrazine (1 mL)
  • water 5 mL
  • heated at 9O 0 C for 12 h to give product (0.213 g, 87 %) as a white solid
  • N 5 -Hydroxy-9jff-purine-2,6-diamine (JA41) Prepared by general procedure from 2-amino-6-chloropurine (0.50 g, 2.98 mmol) and hydroxylamine (50% in water) (0.91 mL, 29.8 mmol) in EtOH:H 2 O (1:1) (10 roL) heated at 6O 0 C for 24 hto give product (0.39 g, 78 %) as a white solid; ⁇ H (DMSO) 9.54 (IH, s, NH), 7.65 (IH, s, ArH), 6.41 (2H, s, NH 2 ); m/z (HRMS) Found: (M+H) + , 167.0687, C 5 H 6 N 6 O requires (M+H) + 167.0681, deviation 3.2 ppm.
  • ⁇ -Methoxyadenosine (JA26) (A. Giner-Sorolla et al, J. Med. Chem., 1968, 11, 521; T. Fujii etal, Chem. Pharm.. Bull., 1973, 21, 1676; T. Fuj ⁇ et al, Chem. Pharm. Bull, 1987, 35, 4482)
  • the title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na + form), ⁇ p (D2O) ⁇ -P - 6.2, (d); ⁇ -P -9.8, (d); ⁇ -P -20.8, (t).
  • Example 8 Synthesis of pyrrolopyrimidine and purine nucleoside analogues according to general Formula IBA. (See Figure 6)
  • Ex 9.2 is prepared 2-methylsulfonyl-6-cliloro ⁇ yrrolopyrimidine with hydroxylamine as described above.
  • Ex 9.3 is prepared from Ex 9.1 by treatment with phenylsulfonyl chloride.
  • Ex 9.4 is the 2'-deoxynucleoside derivative of JA28. It is prepared by the action of hydroxylamine on 6-chloropurine-2'-deoxyriboside.
  • Example 9 Synthesis of purine nucleoside analogues according to general Formula IB.
  • Ex 10.1-10.3 are prepared from the corresponding 7-iodo derivatives (purine numbering) by the action of hydroxylamine.
  • Ex 10.4-10.6 are prepared from the corresponding 7-iodo derivatives (purine numbering) by the action of hydrazine.
  • Ex 11.1 is prepared by the action of methyl hydrazine on 2'-deoxy-2-chloroadenoisne.
  • Ex 11.2 is prepared by the action of methylhj ⁇ droxylamine on 2'-deoxy-2-chloroadenoisne.
  • Ex 11.3 is prepared by the action of methyl hydrazine on 2'-deoxy-2-chloroinosine.
  • Ex 11.4 is prepared by the action of methylhydroxylamine on 2'-deoxy-2- chloroinosine.
  • uv ⁇ max/nm 316 (9600), 246 (32300), ⁇ min/nm 302, 222; pH 1 ⁇ max/nm 274 (28400), 253 (29800), ⁇ min/nm 268, 225; pH 12 ⁇ max/nm 316 (13700), 229 (34900), ⁇ min/nm 306, 232, 209. m/z 595.1 (M+Na) + Accurate mass measurement on C 31 H 2 SN 2 O 9 Na 595.16750, deviation : 2.99ppm.
  • Ex 13.4 was prepared by the action of hydrazine on Ex 13.2.
  • Ex 13.5 was prepared by the action of methyl hydrazine on Ex 13.2.
  • Ex 13.6 was prepared from the corresponding bromoindole by the action of hydroxylamine using Pd catalysts.

Abstract

Disclosed is use of a compound having a structure according to general formula (I) defined below, in the manufacture of a medicament to treat and/or prevent a parasitic infection or infestation in a mammalian subject wherein X1 = N or CH or C=O (X2 = NH) or C=S (X2 = NH) or C-OR1 or C-halogen or C-azide; X2 = N or CR1 or C-halogen or CS(O)nR1 where n = 0-2 or a (C)m linker where m = 1-3 between X2 and X6 or C-X5X6 (in which case X5X6 at C6 (purine numbering) is replaced by H or NHR1 or O or OR1 or S or SR1); X3 = N or CH or C-NO2; X4 = N or CH or C-NO2 or C-NR1R2 or an amidine derivative or a guanidinium derivative; X5 = O or NR1 or CR1R2; X6 = OR1 or O-acyl or 0-S(O)nR1 or NR1R2 or NH-acyl or N(Acyl)2 or NH-OS(O)2R1 or NH-S(O)nR1 where n = 0-2 or a hydrazone derivative or an oxime derivative, but if X5 = O, X6 cannot = O or X5X6 is an amidine or an N-substituted pyridine or substituted guanidine; Y = H or NH2 or NR1R2 or -O (X3 = NH) or OR1 or F or Cl or Br or I or CR1R2R3 or S(O)nR1 where n = 0-2 or azide or X5X6 (in which case X5X6 at C6 (purine numbering) is replaced by H or NHR1 or O or OR1 or S or SR1); R1, R2, R3 are independently selected from the group consisting of H or (optionally substituted), alkyl, alkenyl or alkynyl or aryl or aralkyl where the substituents may be selected from H, OH, NH2, halogen, N3, CN, CHO, COOR', C0NR'2, OR, NE'2, SR', NR'NR'2, NR'OR', NO2 and R' is alkyl, alkenyl, alkynyl, aralkyl, acyl, sulfonyl; Z = H or substituted (alkyl or alkenyl or alkynyl or aralkyl) or a sugar derivative of general formula (II) in the β-configuration where: B is the nucleobase from Formula (I); X7 = CH2 or O or NR1 or S; R4 = H or OH or OR1 or halogen or azide or a phosphate derivative; R5 = H or F or CH3; R6 = H or OH or OR1 or halogen or azide or a phosphate derivative; and R7 = H or halogen or R1 or a derivative of an amino acid or PO3H2 or P2O6H3 or P3O9H4 or a methylene derivative of P2O6H3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-O replaced with CH2).

Description

Title: Antiparasitic Compounds and Compositions
Field of the invention
The present invention relates to methods of inhibiting the replication of parasites, pharmaceutical compositions for use in inhibiting the replication of parasites, and the use of various compounds in the preparation of medicaments to inhibit parasite replication and to certain novel compounds per se.
Background of the invention
Diseases due to parasites represent a very large health problem worldwide. As an example, malaria (caused by infection with Plasmodium spp) leads to the death of 1-3 million people per annum, and the disease is endemic in several hundred million, mainly in underdeveloped countries. The metabolic enzymes in the parasitic organism, if sufficiently different from the host, provide general targets for chemotherapy [Fidock, DA. et al, (2004), Nature Reviews Drug Discovery, 3, 509]. Protozoa in general cannot synthesise purines, necessary for very many processes in the cell, including DNA and ATP synthesis. The parasite's purine requirement is supplied by the host, particularly via hypoxanthine from which all other purines required by the protozoa are derived. The transporters of nucleobases and nucleosides into the parasitic organism have been intensely studied in recent years. The transporters, of which there may be one or several in a particular parasite, represent a major therapeutic target [de Koning, H.P. et al FEMS Microbiology Reviews, (2005), 29, 987; el Kouni, M.H. (2003), Pharmacol. Therapeutics, 99, 283]. They may also, in certain cases, transport other presently used therapeutic agents, leading to an anti-parasitic effect. Rodenko et al, (2006 Bio-organic & Medicinal Chemistry 14, 1618-1629) investigated the antiprotozoal activity of various di- and trisubstituted 5'-carboxamido-adenosine analogues. They found that, in that context, a small 5'-substituent such as methyl or ethyl was generally not favourable for antiprotozoal activity. The present invention concerns, inter alia, purine and purine-related compounds that may act by inhibiting transporter uptake of host purines and/or by transport into the cell to interact with the protozoan metabolic systems [e.g. Klinkert, M.-Q. and Heussler, V., (2006), Mini-Reviews in Med. Chem., 6, 131; Jadhav, A.L. et al, (1979), Biochem. Pharmacol, 28, 1057], or possibly by as yet undiscovered mechanisms. -
Mutations, over time, in the transporters or in other metabolic enzymes can lead to the development of resistance to many of the existing anti-parasitic compounds, and the need for novel compounds is great [Fidock, D.A. et al, (2004), Nature Reviews Drug Discovery, 3, 509]. Present indications suggest that multi-drug therapy should be used, and it is intended that this should be so with compounds derived from the work described in this application.
Brief description of the invention
The present invention is directed to, inter alia, purine and bicyclic azole analogues, and their therapeutic uses.
In a first aspect, the invention provides for use purine analogues of general formula I, defined below, in the manufacture of a medicament to treat and/or prevent a parasitic (especially protozoal) infection or infestation in a mammalian subject;
Figure imgf000004_0001
Formula I
wherein X1 = N or CH or C=O (X2 = NH) or C=S (X2 = NH) or C-OR1 or C-halogen or C- azide;
X2 = N or CR1 or C-halogen or CS(O)nRi where n = 0-2 or a (C)2n linker where m = 1-3 between X2 and X6 or C-X5X6 (in which case X5X6 at C6 (purine numbering) is replaced by
H or NHRi or O or ORi or S or SRi); X3 = N or CH or C-NO2 ;
X4 = N or CH or C-NO2 or C-NRiR2 or an amidine derivative or a guanidinium derivative;
Figure imgf000005_0001
;
X6 = OR1 or O-acyl or 0-S(O)nR1 or NR1R2 or NH-acyl or NH-OS(O)2R1 or NH-S(O)nR1 where n = 0-2 or a hydrazone derivative or an oxime derivative but if X5 = O X6 cannot = O or X5Xe is an amidine or aniV-substituted pyridine or substituted guanidine;
Y = H or NH2 or NR1R2 or =0 (X3 = NH) or OR1 or halogen or CR1R2R3 or S(O)nR1 where a = 0-2 or azide or X5X5 (in which case X5X5 at C6 (purine numbering) is replaced by H or
NHR1 or O or OR1 or S or SR1);
R1, R2, R3 are independently selected from the group consisting of H or (optionally substituted) alkyl or alkenyl or alkynyl or aryl or aralkyl, where the substituents may be selected from H, OH, NH2, halogen, N3, CN, CHO, COOR, C0NR'2, OR, NR'2, SR,
NR1NR2, NR1OR1 or NO2, where R is alkyl, alkenyl, alkynyl, aralkyl, acyl or sulfonyl;
Z = H or (optionally substituted) alkyl or alkenyl or alkynyl or aralkyl or a β-D-linked sugar derivative of general formula II:
R6' 'R4
Formula II
B is the nucleobase from Formula I;
X7 = CH2 or O or NR1 or S;
R4 = H or OH or OR1 or halogen or azide or a phosphate derivative;
R5 = H or F Or CH3 ;
Rs = H or OH or ORi or halogen or azide or a phosphate derivative; and
R7 = H or halogen or R1 or a derivative of an amino acid or PO3H2 or P2O6H3 or P3O9H4 or a masked phosphate derivative.
Note that, in formula I, if Xi is OO or C=S, then X2=NH. In general in the present invention Yi is preferably H or NH2.
In general in the present invention X1 is preferably CH.
In general in the present invention X2 is preferably N.
In general in the present invention X5Xg is preferably selected from the group consisting of -
NH-NH2, -NH-OH, and -N(alkyl)-NH2.
In general in preferred embodiments Y1 is H or NH2 and X1 is CH.
In general in preferred embodiments Y1 is H or KfH2 and X2 is N.
In general in preferred embodiments X1 is CH and X2 is N.
In general in preferred embodiments Y1 is H or NH2, Xi is CH and X2 is N.
In general in preferred embodiments Y1 is H or NH2, X1 is CH, X2 is N, and X5X6 is selected from the group consisting of -NH-NH2, -NH-OH and ~N(alkyl)-NH2.
In a second aspect the invention provides a pharmaceutical composition comprising a therapeutically or prophylactically effective amount of a compound as defined in the first aspect, or a pharmaceutically acceptable ester or salt thereof, preferably admixed with a further therapeutically active agent effective in the prevention or treatment of protozoal infections, with at least one pharmaceutically acceptable carrier, diluent or excipient.
In a third aspect the invention provides a method of making an anti-protozoal pharmaceutical composition for administration to a mammalian subject, the method comprising the step of mixing a therapeutically effective amount of a compound as defined hi the first aspect, or a pharmaceutically acceptable ester or salt thereof, with at least one pharmaceutically acceptable carrier, diluent or excipient, and preferably also with at least one further therapeutically active agent effective hi the prevent or treatment of protozoal infections.
In a fourth aspect the invention provides a method of preventing or treating a parasitic (especially protozoal) infection or infestation in a mammalian subject, the method comprising the step of administering an active agent and/or a pharmaceutical composition in accordance with the previous aspects of the invention. The various aspects of the invention defined above relate generally to the prevention and/or treatment of protozoal infections or infestations (or compositions useful therein) in a mammalian subject. Preferably the mammalian subject is a human, but it may also be, for example, a domesticated livestock animal such as a cow, goat, sheep or the like, or a companion animal such as a dog or cat.
The invention concerns protozoal infections in general, but especially those of man, such as those caused by Plasmodium spp., Leishmania sp. and Tiypanosomes. The invention particularly relates to methods and compositions for the prevention and/or treatment of malaria.
Efficacy of the methods/compositions may readily be determined using, for example, an assay method along the Hues described herein or by any other assay method, many of which are well-known to those skilled in the art.
Any method/composition which produces a positive response may be useful. A positive response includes, for example, a reduction in parasite numbers when active agent is administered in vivo or in an in vtiro assay and/or a reduction in the amount of one or more parasite-specific antigens, which can be readily measured by standard techniques such as ELISA, ELISpot assay, FACScan etc. A "therapeutically effective amount" is an amount of antiprotozoal agent (or composition containing the agent) which elicits a detectable positive response. A "prophylactically effective amount" is an amount which results in a detectable reduction in parasite numbers and/or severity of one or more symptoms in a subject, following exposure to a parasitic protozoal organism, compared to an untreated subject exposed to the same dose of organisms.
Detailed description
Where the following terms are used in this specification, they are defined as below.
The term "nucleobase" refers to a compound that contains a ring structure containing atoms in addition to carbon, such as sulfur, oxygen or nitrogen as part of the ring. They may be either simple aromatic rings or non-aromatic rings. Positions of the ring may be optionally substituted independently with, e.g. hydroxy, oxo, amino, imino, alkyl, bromo, chloro, cyano, azido and nitro. Included within this class of substitutents are purines and indoles (X3,
Figure imgf000008_0001
The term "nucleoside" refers to a compound composed of any pentose or modified pentose moiety attached to a specific position of a nucleobase or to positions 7-, 8- or 9- of a purine or to the equivalent position in an analogue, and for present purposes refers, exclusively to a D-nucleoside in the β configuration, unless the context dictates otherwise. Any nucleosides having the α and/or L configuration are outside the scope of the claims of the present application.
The term "nucleotide" refers to a phosphate ester substituted on the 5'-position of a nucleoside and includes diphosphates, triphosphates, protected monophosphates and analogues thereof.
The term "purine" refers to nitrogenous bicyclic or polycyclic heterocycles containing at least one six and one five member ed ring.
The term "D-nucleoside" used in the present invention describes nucleoside derivatives that have the D-ribose sugar moiety like those found in natural nucleosides such as adenosine.
The term "β" indicates the specific stereochemical configuration of a substituent at an asymmetric carbon atom in a chemical structure as drawn. In this specification it refers to the orientation of the glycosidic bond. The compounds described herein are all in the D- furanosyl configuration.
The term "protecting group" refers to a chemical group that is added to a heteroatorn, such as O, S, N or P, to prevent its further reaction during the course of derivatisation of other moieties in the molecule in which the heteroatom is located. A wide variety of protecting groups are known to those skilled in the art of organic synthesis. The term "masked phosphate derivative" is a modified phosphate group in which the negative charge(s) which would normally be present in an unmodified phosphate group are reduced or (more preferably) entirely neutralized by additional moieties. This has the benefit of facilitating transport of compounds comprising the modified phosphate group across a lipid membrane (e.g. across a cell membrane). Examples of masked phosphate derivatives are bis-POM/bis-POM PMEA (see Delaney et al, 2001 Antiviral Chemistry and Chemotherapy 12, 1-35), cyc/σSal (Meier et al, Eur. J. Org. Chem. 1998, 837) and SATE (Lefebvre et al, J Med. Chem., 1995, 38, 394103950). (SATE is an abbreviation of S-acyl thioethyl).
The term "tautomer" refers to functional groups that are able to undergo formal migration of a hydrogen atom accompanied by a switch of adjacent conjugated double bonds. Thus in this specification structures where X4 = N and X5 = NH the analogues will exist in a tautomeric equilibrium as shown in Figure 1. Thus the analogues can, depending on the constraints of the immediate environment (e.g. as an enzyme substrate or by interaction with other biomolecules), act as either a 'guanosiαe' or an 'adenosine' derivative.
The term "alkyl" refers to methyl, ethyl, n-propyl, isopropyl and higher carbon chains of any length, though one to six carbon atoms are preferred, and one to three carbon atoms especially preferred. The term is further exemplified to a cyclic, branched or straight chain.
The term "substituted alkyl" refers to an alkyl chain as defined above which can be further modified by a heteroatom within, where either the heteroatom is part of the chain (e.g. an ether or an amide linkage), or where the heteroatom does not form part of the chain.
The term "alkenyl" refers to carbon chains of any length, though two to six carbon atoms are preferred (and two to three carbon atoms are especially preferred), containing one or more carbon-carbon double bond. The term is further exemplified to a cyclic, branched or straight chain. The term "substituted alkenyl" refers to aα alkenyl chain as defined above which, can be further modified by a heteroatom within where either the heteroatom is part of the chain (e.g. an ether or an amide linkage), or where the heteroatom does not form part of the chain.
The term "alkynyl" refers to carbon chains of any length, though two to six carbon atoms are preferred (and two to three carbon atoms especially preferred), containing one or more carbon-carbon triple bond. The term is further exemplified to a cyclic, branched or straight chain.
The term "substituted alkynyl" refers to an alkynyl chain as defined above which can be further modified by a heteroatom within where either the heteroatom is part of the chain (e.g. an ether or an amide linkage), or where the heteroatom does not form part of the chain.
The term "aryl" refers to an unsaturated aromatic carbocylic ring, which may be composed of a single ring (e.g. phenyl) or condensed rings (e.g. naphthyl), which can optionally be substituted by further substituents such as hydroxy], chloro, cyano and nitro.
The term "alkaryl" or "arylalkyl" refers to any combination of alkyl, alkenyl or alkynyl with aryl susbstitutions, which can optionally be substituted • by further substituents such as hydroxy! chloro, cyano and nitro.
The compounds of formulae I and IA-E (below) may have multiple asymmetric centres. Accordingly they may be prepared in either optically active form or as a racemic mixture. The scope of the invention as described and claimed encompasses the individual optical isomers and non-racemic mixtures thereof as well as the racemic forms of the compounds.
A "pharmaceutically acceptable salt" may be any suitable salt derived from inorganic and organic acids and bases.
Compounds
The compounds of use in the present invention are generally described by general formula 1 above. There are, however, several subsets of compounds which are of particular interest, including compounds according to Formulae IA through BE, each of which represent preferred embodiments of the present invention.
In one embodiment compounds of use in the invention are in accordance with formula IA.
Formula IA compounds are 6-substituted purine derivatives having the structure:
Figure imgf000011_0001
Formula IA where:
Xu = CH or N;
X2.1 = CH or N or S or S-Me or C-halogen or CRi ;
Figure imgf000011_0002
;
X6.i = ORi or O-acyl or 0-S(O)nRi where n = 0-2 or NR1R2 or NH-acyl or N(Acyl)2 NH-
OS(O)2Ri or NH-S(O)nRi where n = 0-2 or Xs.ϊXt.i is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative or a iV-pyridinium derivative but X5.1 and X6.i cannot both be O (Ri and R2, if present, are as defined previously in formula I);
Yi = H or NH2 or =0 (N3 (purine numbering)^ NH) or halogen or azide;
Zi = H or Formula HA in the β-configuration
Figure imgf000011_0003
Formula IIA where:
B is the nucleobase from Formula IA;
R5.i is H or F or CH3 ;
R4J and Rό.i are independently selected from H or OH or F; and
R.7.1 = H or PO3H2 or P2O6H3 or P3O9H4 or a methylene derivative OfPaO6H3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2).
In preferred embodiments according to formula IA:
X2.1 = CH or N or C-halogen or CRi;
X6-1 = OR1 or O-acyl or 0-S(O)2R1 or NR1R2 or NH-acyl or NH-OS(O)2R1 or NH-S(O)nR1 where n — 0-2 or Xs-1Xe-1 is a hydrazone derivative or an oxime derivative but X5-1 and X6^ cannot both be O;
Z1 = H or Formula IIA in the β-configuration; and if present,
R5-1 is H or CH3; and
R7-1 = H or PO3H2 or P3O9H4 or a masked phosphate.
In one embodiment, compounds of use in the invention are in accordance with formula IB.
Formula IB compounds are 7-substituted (purine numbering) purine derivatives having the structure:
Figure imgf000012_0001
Formula EB where:
Xi.2 is N or CH;
Figure imgf000013_0001
X6-2 is QR1 or O-acyl or 0-S(O)nR1 where n = 0-2 or NRiR2 or NH-acyl or NH-OS(O)2Ri or
NH-S(O)nRi where n = 0-2 or X5.2X6.2 is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative but X5.1 and X6-I cannot both be O;
Y1.2 = H or NH2 or -O (N3 = NH) or halogen or azide;
Ri.2 is O or ORi or S or SRi or NRiR2 or halogen;
Z1-2 = H or Formula DA in the β-configuration; where B is the nucleobase from Formula IB;
R5-1 is H or F or CH3;
R4.1 and R5.1 are independently selected from H or OH or F; and
R7-1 = H or PO3H2 or P2O6H3 or PsO9H4 or a methylene derivative Of P2O6H3 or P3OgH4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2).
(Ri and R2, if present, are as defined previously in formula I).
In preferred embodiments according to formula IB:
X6-2 is ORi or O-acyl or 0-S(O)2Ri or NR4R2 or NH-acyl or NH-OS(O)2Ri or NH-S(O)2Ri or X5.2X6.2 is a hydrazone derivative but X5.1 and X6.i cannot both be O;
Y1.2 = H or NH2 or =0 (N3 (purine numbering) = NH) or halogen or azide;
Ri-2 is O or ORi or NRiR2 or halogen;
Zi-2 = H or Formula DA in the β-configuration; and, if present,
R5-I is H or CH3; and
R7-1 = H or PO3H2 or P3O9H4 or a masked phosphate.
In one embodiment, compounds of use in the invention are in accordance with formula IC. Formula IC compounds are 2-substituted purine derivatives having the structure:
Figure imgf000013_0002
Formula IC where:
Figure imgf000014_0001
X2.3 is CH orN;
Figure imgf000014_0002
X6.3 is OR1 or O-acyl or 0-S(O)nR1 where n = 0-2 or NRiR2 or NH-acyl or NH-OS(O)2Ri or
NH-S(O)nRi where n = 0-2 or X5.3X6.3 is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative but X5.i and Xe.i cannot both be O;
Ri.3 is O or OR1 or S or SRi or NRiR2 or halogen;
Z1-3 = H or Formula IBB in the β -configuration; where B is the nucleobase from Formula IC;
Figure imgf000014_0003
R4-I and Rg.i are independently selected from H or OH or F; and
R7.i = H or PO3H2 or P2OOH3 or P3OgH4 or a methylene derivative OfP2OsHs or P3O9H4 or a masked phosphate or aphosphonate derivative (5'-0 replaced with CH2).
(Ri and R2, if present, are as defined previously in formula I).
In preferred embodiments according to formula IC:
X6-3 is ORi or O-acyl or 0-S(O)2Ri or NRiR2 or NH-acyl or NH-OS(O)2Ri or NH-S(O)nRi where n = 0-2 or X5.3X6.3 is a hydrazone derivative but X5.1 and Xδ.i cannot both be O;
R1.3 is O or ORi or NRiR2 or halogen;
Z1.3 = H or Formula IBB in the β-configuration; where B is the nucleobase from Formula IC
B is the nucleobase from Formula IB
Figure imgf000014_0004
R7.! = H or PO3H2 or P3O9HU or a masked phosphate.
In one embodiment compounds of use in the invention are in accordance with formula ID. Formula ID compounds are S'-^-modified β-D-purine derivatives having the structure:
Figure imgf000015_0001
Formula TD where:
Xi.s is CH orN;
X2.5 is CH or N;
Ri.5 is O or OR1 or S or SR1 or NR1R2 or halogen;
Yi1S is H or NH2 or -O (N3 (purine numbering) = NH) or halogen or azide or X5Xe;
R4-5 is H or OH or F;
R6-5 is H or OH or F; and
R7.5 is acyl or alkyl or an amino acid such as homocysteine or a derivative of an amino acid such as butanoic acid. (R1 and R2, if present, are as defined previously in formula I).
In preferred embodiments according to formula ID:
RL5 is O or OR1 or NR1R2 or halogen;
Yi,5 is H or NH2 or =0 (N3 (purine numbering) = NH) or halogen or azide; and
R7.5 is acyl or alkyl or an amino acid such as homocysteine or a derivative of an amino acid such as butanoic acid.
In one embodiment, compounds of use in the invention are in accordance with formula IE. Formula IE compounds are modified bicyclic azole derivatives having the structure:
Figure imgf000016_0001
Formula IE where: . . .
Figure imgf000016_0002
X4-O is CH or C-NO2 or C-NRiR2 or an amidine derivative or a guanidinium derivative;
X5.6 is H or NH2 or O or OR1 or S or SRi;
R8, if present, is CONHR1 or CONRiNHR2 or CONRiOR2;
Y6 is H or NH2 or NHRi or N3 or halogen or O or ORi or S or SRi or CRiR2R3;
Zi.6 is H or Ri or Formula UA in the β -configuration where B is the nucleobase IE;
R5.i is H or F or CH3;
R4. i and Rg. i are independently selected from H or OH or F; and
R7.i = H or PO3H2 or P2O6H3 or P3O9H4 or a methylene derivative of P2OδH3 or P3OgH4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2). (Ri, R2 and R3, if present, are as defined previously in formula I).
In preferred embodiments according to general formula IE,
X4.6 is CH or C-NO2 or C-NRiR2;
X5.6 is H or NH2 or O or ORi or S;
Yg is H or NHRi or N3 or halogen or O or ORi;
Zu is H or Ri or Formula IIA in the β-configuration where B is the nucleobase IE;
Figure imgf000016_0003
R7.i = H or PO3H2 or P3O9H4 or a masked phosphate.
In yet a fifth aspect, the invention provides a novel purine nucleobase/nucleoside/nucleotide analogue, according to one of the general formulae IB, IC or IE, as defined previously. The compound may be provided in substantially pure form (at least 50% w/w, preferably at least 75% w/w purity).
Compounds according to this aspect of the invention are believed to be mwtlper se. These compounds have, or may have, anti-protozoal activity and/or may be useful in the synthesis (in vitro or in vivo) of compounds having anti-protozoal activity. Accordingly, in a sixth aspect the invention provides a pharmaceutical composition comprising one or more compounds in accordance with the fifth aspect, in admixture with a pharmaceutically acceptable carrier, diluent or excipient. The composition may additionally comprise one or more further conventional, known antiprotozoal compounds.
In a seventh aspect the invention provides for use of a compound in accordance with the fifth aspect defined above, in the manufacture of a medicament to treat and/or prevent a parasitic, especially a protozoal, infection or infestation in a mammalian subject.
The invention also provides a method of making a pharmaceutical composition, comprising mixing one or more compounds, hi accordance with the fifth aspect of the invention defined above, with a pharmaceutically acceptable carrier, diluent, or excipient (and optionally with one or more further anti-protozoal compounds); and a method of treating and/or preventing a protozoal infection or infestation in a mammalian (preferably human) subject, the method comprising the step of administering to the subject a therapeutically or prophylactically effective amount of a compound hi accordance with the fifth aspect of the invention defined above.
The composition may be made, formulated and administered generally as described elsewhere in this specification.
For the avoidance of doubt it is hereby expressly stated that features described herein as "preferred", "desirable", "convenient", "advantageous", "particular" and the like may be used hi the invention (and claimed) in isolation or in any combination with one or more other features so described, unless the context dictates otherwise, and the present disclosure should be interpreted accordingly. Uses
It is contemplated that compositions containing compounds according to formula I and especially according to one of formulae IA-IE, may be used to treat a variety of conditions, and in fact any condition which responds positively to the administration of one or more of the compounds. Among these it is specifically contemplated that compounds of the invention may be used to treat an infection or an infestation of protozoal origin.
Infections which may be treated with the compounds and compositions of the present invention include, in particular, malaria, trypanosomes and Leishmania. In particular, compositions in accordance with the invention may be especially useful in treating malarial diseases caused by infection with strains of Plasmodium which are substantially resistant to chloroquine.
Infestations contemplated to be treated with the compounds of the present invention include protozoan infestations as well as helminth and other parasitic infestations.
Still other contemplated uses of the compounds according to the present invention include use as intermediates in the chemical synthesis of other nucleoside or nucleotide analogues which are, in turn, useful as therapeutic agents or for other purposes.
In general, the most preferred uses according to the present invention are those in which the active compounds are relatively less cytotoxic to the non-target host cells and relatively more active against those of the protozoal target.
It is contemplated that compounds and compositions according to the present invention may be administered in any appropriate formulation and under any appropriate protocol. Thus administration may take place orally, parenterally (including subcutaneous injections, intravenous injections, intramuscularly, by intrasternal injection or by fusion techniques), by inhalation spray, topically or rectally and so forth, and in dosage unit formulations containing conventional non-toxic pharmaceutically acceptable carriers and vehicles. W
17
It is contemplated that compounds and compositions according to the present invention can be formulated in admixture with a pharmaceutically acceptable carrier, for example the compounds of the present invention can be administered orally as pharmacologically acceptable salts. Compounds of the present invention may also be administered intravenously in physiological saline solution (e.g. buffered to a pH of about 7.2 to 7.5, conventional buffers such as phosphates or bicarbonates or citrates could be used for this purpose). One skilled in the art may modify the formulations within the teachings of the present invention to provide alternative numerous formulations for a particular route of administration without rendering the compositions of the present invention unstable or compromising their therapeutic activity. For example, the modification of the present compounds to render them more soluble in water or other vehicle may be easily accomplished by minor modifications, such as salt formulation or esterification etc, according to the knowledge of those skilled in the art. Those skilled in the art may also modify the route of administration in order to manage the pharmacokinetics of the compounds described in this specification for maximal beneficial effect in patients.
In certain pharmaceutical dosage forms, the pro-drug form of the compounds described in this specification, in particular acylated derivatives, pyridine esters and various salt forms of the compounds are preferred. One skilled in the art will recognise readily how to modify the present compounds to pro-drug forms to facilitate delivery of active compounds to a target site within the host organism or patient. One skilled in the art will also take advantage of favourable pharmacokinetic parameters of the pro-drug forms, where applicable, to deliver the present compounds to a targeted site within the host organism or patient to maximise the therapeutic effect of the compound.
In addition, compounds of the present invention may be administered alone or, more preferably, in combination with other agents for the treatment of the above infections or infestations or conditions. Combination therapies according to the present invention comprise the administration of at least one compound of the present invention or a functional derivative thereof with at least one other pharmaceutically active ingredient. The said at least one other pharmaceutically active ingredient may be a conventional, known antiprotozoal agent or may be a compound in accordance with the present invention. The active ingredient(s) and pharmaceutically active agents may be administered separately or together, and when administered separately this may occur substantially simultaneously or separately in any order. The amounts of the active ingredient(s) and pharmaceutically active agent(s) and the relative timings of administration will be chosen in order to achieve the desired combined therapeutic and/or prophylactic effect. Preferably the combination therapy involves the administration of one compound of the present invention or a functional derivative thereof and one the agents mentioned herein below.
Examples of such further therapeutic agents which are effective for the treatment of protozoal infections or associated conditions include chloroquine, pyrimethamine, cycloguanil, doxycycline, mefloquine, primaquin, diminazene, isometamidium, or artemisinin or derivatives thereof. Certain compounds according to the present invention may be effective for enhancing the biological activity of certain other agents according to the present invention (or otherwise) by reducing the metabolism or inactivation of other compounds and as such may be co-administered for this intended effect.
With respect to dosage, one skilled hi the art will recognize that a therapeutically and/or prophylactically effective amount will vary with the infection or condition to be treated, the degree of its severity, the treatment regimen employed, the pharmacokinetics of the agent used as well as the patient to be treated. Effective dosages may range from lmg/kg of body weight or less to 25mg/kg of body weight or more. Generally, effective dosage of the present compound(s) ranges from less than lmg/kg to 25mg/kg of body weight of the patient, depending upon the compound used, the condition or infection treated and the route of administration. This dosage range generally produces effective blood level concentrations of active compound ranging from 0.04 to about 100 micrograms/cc of blood in the patient. It is contemplated though that an appropriate regimen may be developed by administering a small amount, and then increasing the amount until either the side effects become unduly adverse, or the intended effect is achieved.
Administration of the active compound may range from continuous (intravenous drip) to several oral administrations per day, and may include oral, parenteral, intramuscular, intravenous, sub-cutaneous, transdermal (which may include a penetration enhancement agent), buccal, topical and suppository administration, amongst other routes of administration.
To prepare the pharmaceutical composition according to the present invention, a therapeutically and/or prophylactically effective amount of one or more of the compounds according to the present invention is preferably intimately admixed with a pharmaceutically acceptable carrier according to conventional pharmaceutical compounding techniques to produce a dose. A carrier may take a wide variety of forms depending upon the form of the preparation desired for administration, e.g. oral or intravenous. In preparing pharmaceutical compositions in oral dosage form, any of the usual pharmaceutical media may be used. Thus for liquid oral preparations, such as suspensions, elixirs and solutions, suitable carriers and additives including water, glycols, oils, alcohols, flavouring agents, preservatives, colouring agents and the like may be used. For solid oral preparations, such as powders, tablets, capsules and for solid preparations such as suppositories, suitable carriers and additives include sugar carrier such as dextrose, mannitol, lactose and related carriers, starches, diluents, granulating agents, lubricants, binders, disintegrating agents and the like may be used. If desired, the tablets or capsules may be enteric-coated or sustained release by standard techniques. For parenteral formulations, the carrier will usually comprise sterile water or aqueous sodium chloride solution, though other agents including those which aid dispersion may be included. Where sterile water is used and to be maintained as sterile, the compositions and carriers must also be sterilized. Injectable suspensions may also be prepared using liquid carriers, suspending agents and the like may be employed.
The invention will now be further described by way of illustrative examples, and with reference to the accompanying drawings in which:
Figure Ia shows the tautomerism of Nδ-amino or Η^-hydroxy derivatives;
Figure Ib shows the conventional numbering adopted to number the atoms in the purine bycyclic structure;
Figure 2 shows the structure of various compounds displaying activity against trypanosomes or Leishmanial Figure 3 shows structures of various purine nucleobase analogues according to general formula IA (Zi = H);
Figure 4 shows structures of various purine nucleoside analogues according to general formula IA (Zi = ribose);
Figure 5 shows structures of various purine nucleoside 5 '-triphosphate analogues according to general formula IA (Zi = ribose, 5 '-triphosphate);
Figure 6 shows structures of various pyrrolopyrimidine nucleoside and nucleobase analogues according to general formula IA;
Figure 7 shows structures of various pyrazolopyrimidine nucleoside and nucleobase analogues according to general formula IB;
Figure 8 shows structures of various purine nucleoside and nucleobase analogues according to general formula IC;
Figure 9 shows structures of various purine nucleoside analogues according to general formula ID;
Figure 10 shows structures of purine nucleoside analogues according to general formula IE.
EXAMPLES
Example 1
In vitro and in vivo anti-malarial testing
In vitro parasite growth inhibition assays and in vitro drug-drug interactions.
In viti'o parasite growth inhibition was assessed by the incorporation of [3H] hypoxanthine based on the method used by Desjardhis (R. E. Desjardins et al, Antimicrob. Agents Chemother., 1979, 16, 710) and modified as described by Vivas and co-workers (L. Vivas et al, Exp. ParasitoL, 2005, 111, 105). All assays included chloroquine diphosphate as a standard and control wells with untreated infected and uninfected erythrocytes. The compounds were dissolved in 100% dimethylsulfoxide (Sigma) and serial dilutions were made in assay medium. Fifty microlitres of P. falciparum (65-75% ring stage) culture at 0.5% parasitaemia or uninfected erythrocytes were added to each well reaching a final volume of 100 μl per well, a final haematocrit of 2.5% and final dimethylsulfoxide concentrations G 0.01%. Plates were incubated at 370C in 5% CO2, 95% air mixture for 24 h, at which point 20 μl (0.1 μCi/well) of [3H] hypoxanthine (Perkϊn Elmer, Hounslow, United Kingdom) was added to each well and returned to the incubator for an additional 24 h incubation period at which point, the experiment was terminated by placing the plates in a - 800C freezer. Plates were thawed and harvested onto glass fibre filter mats using a 96-well cell harvester (Harvester 96 ™, Tomtec, Oxon, UK) and left to dry. After the addition of MeltiLex™ solid scintillant (PerkinFImer, Hounslow, United Kingdom) the incorporated radioactivity was counted using a Wallac® 1450 Betalux scintillation counter (Wallac®). Data acquired by the Wallac® BetaLux scintillation counter were exported into a MICROSOFT® EXCEL spreadsheet (Microsoft Corp.), and the IC50ZIC9O values of each drug were calculated by using XLFit® (ID Business Solutions Ltd., UK) line fitting software.
Three strains of P. falciparum were used:
1. 3D7 variant of NF54 which is known to be sensitive to ah1 anti-malarials.
2. Kl strain originating from Thailand that is resistant to chloroquine and pyrimethamine, but sensitive to mefloquine.
3. VSl strain originating from. Vietnam that is highly chloroquiαe, pyrimethamine and cycloguanil resistant.
Full suppressive 4-day Peters' test. In vivo tests were performed under the Home Office Animals (Scientific Procedures) Act 1986. CD-I outbred 20g male mice (Charles Rivers, UK), were kept in specific pathogen-free conditions and fed ad libitum. For subcutaneous administration, the compounds were dissolved in 10% dimethylsulfoxide (DMSO) 0.05% Tween 80 (Sigma, Dorset, UK) in distilled water. For oral administration, compounds were dissolved in standard suspending formula (SSV) [0.5% sodium carboxymethylcellulose, 0.5% benzyl alcohol, 0.4% Tween 80, 0.9% NaCl (all Sigma)]. Mice were infected intravenously with 2 x 106P. chάbaudi AS parasitized red cells and treated subcutaneously (s.c.) or orally (p.o.) with 0.2 ml of a solution of the test compounds two hours (day 0) and on days 1, 2, 3 and 4 post-infection, at a dose of 30mg test compound per Kg body weight. Parasitaemia was determined by microscopic examination of Giemsa stained blood films taken on day 5 post infection. Microscopic counts of blood films from each mouse were processed using MICROSOFT® EXCEL (Microsoft Corp.) and expressed as percentages of inhibition from the arithmetic mean parasitaemias of each group in relation to the untreated group. Dose response curves were obtained and ED50 and ED90 values calculated.
Results for in vitro testing are shown in Table I5 for in vivo testing in Table 2 below.
Table 1 Anti-plasmodial in vitro activity of purine analogues ([3H] hypoxanthine assay)
Figure imgf000025_0001
3D7: drug sensitive
Kl : chloroquine and pyrimethamine resistant
VSl: highly chloroquine, pyrimetharnine and cycloguanil resistant n. d. : not determined Table 2 in vivo activity of purine analogues in the P. berghei AKKA model (Peters' 4-day test
Route of Percentage of inhibition of parasitaemia at 30mg/kg : s: 4 d (once daily) administration JA23 JA24 JA32 Pyrimethamine
S. C. 23.4% 14.0% 0% 100% p.o. 12.3% 22.3% 3.9% 100% s.c: subcutaneously p.o. : oral
Referring to Table 1, it is apparent that those compounds with the greatest selectivity index (i.e. those compounds with the least cytotoxicity for the host and greatest toxicity for protozoa) were the nucleoside analogues JA23 and JA24, and the nucleobase analogue JA32. These compounds, (and JA23 in particular) were especially promising in respect of strain VSl, which is highly resistant to many conventional anti-malarials. This promise was confirmed by in vivo data, which showed that all three compounds (but especially JA23 and JA24) inhibited parasitaemia when given orally, and JA23 and JA24 also inhibited parasitaemia when administered sub-cutaneously.
Nevertheless, from the in vitro data, it was expected that JA23, 24 and 32 would show rather more activity in vivo than was in fact found.
There are two possible reasons to account for the difference between the in vitro and the in vivo data. One explanation is that P. falciparum (human malaria) does not grow in or infect rodents so there is a need to use rodent malaria models. Additionally, rodent malaria strains cannot be maintained in in vitro cultures, although they can be cultured for a short period to do uptake experiments.
Thus, the in vitro and in vivo experiments were necessarily conducted using different strains of 'Plasmodium. A second explanation is that the analogues, being highly polar, may be rapidly excreted from the mice with very little actual uptake of drug. This is a well-known phenomenon for polar materials. To counteract this effect the analogues may be modified to facilitate greater bioavailability. Thus the modifications to X6 (0-acyl or 0-S(O)IiR1 or NRiR2 or NH-acyl or NH-0S(0)2Ri or NH-S(0)nRi where n = 0-2 or a hydrazone derivative or an oxime derivative) are used to enhance the in vivo bioavailability of analogues. These modifications represent preferred embodiments of the invention, both in general and in particular relation to JA23, 24 and 32.
Example 2
In vitro antitrypanosomal testing
Trypanosoma cruzi: in vitro assay
Parasite and cell cultures
The Trypanosoma cruzi (MHOM/CL/OO/Tulahuen) transfected with β-galactosidase (Lac Z) gene, was used (F. S. Buckner et al, Antimicrob. Agents Chemother., 1996, 40, 2592). The strain was maintained on an L-6 rat skeletal myoblast cell line (obtained from European Collection of Animal Cell Cultures, ECACC, Salisbury, UK) cell-layer in RPMI 1640 medium, supplemented with 10% heat inactivated foetal calf serum (FCS). All cultures and assays were conducted at 37°C under an atmosphere of 5% CO2 /95% air mixture.
Primary peritoneal mouse (CDl) macrophages were collected by lavage, -two days after induction with i.p. injection of 2ml 2% soluble starch. All cultures and assays were conducted at 37°C under an atmosphere of 5% CO2/95% air mixture.
Drug sensitivity assays
Stock drug solutions were prepared in 100% DMSO (dimethylsulfoxide) unless otherwise suggested by the supplier at 20 mg/ml. The stocks were kept at 4°C (unless otherwise advised) for up to 2-3 weeks in the dark. For the assays, compounds were further diluted to the appropriate concentration, normally in the range of 30μg/ml to 0.1 μg/ml, in RPMI 1640 medium without phenol red, plus 10% FCS. Assays were performed in sterile 96-well microtiter plates, each well containing 100 μl of 4x105 mouse macrophages/ml (4 x 104/well) in RPMI 1640 medium without phenol red plus 10% FCS. After 24 h, 100 μl of a suspension containing 2 x 106 trypomastigotes/ml, (2 x 105/well) from culture are added to the wells. 24 h later, the medium was removed from the wells and replaced by 100 μl fresh medium with or without a serial drug dilution. After 72 h of incubation the plates were inspected under an inverted microscope to assure growth of the controls, toxicity to host cells and presence or absence of trypomastigotes in the overlay. Benznidazole was used as the standard drug over the concentration range as above.
At 72 h, the substrate CPRG/ Nonidet (50 μl) was added to all wells; medium was not removed prior to this. A colour reaction became visible within 2-6 h, which was read photometrically at 540nm on a spectrophotometer. The results were expressed as % reduction in β-galactosidase activity compared to control wells, normalised with uninfected macrophages. This is related to a previously established parasite number to β-galactosidase signal slope. Data were transferred into a graphic programme, dose - response inhibition curves are determined using MSExcelfit and IC50 values were calculated.
Primary screen
The compounds were tested, in triplicate, at 4 concentrations (30 - 10 - 3 - 1 μg/ml). Benznidazole® (Roche) was included as the reference drug and has an IC50 value in the range of 0.5 - 1.5 μg/ml.
Human African trypanosomiasis: in vitro screening model
Parasite cultures
Trypanosoma brucei rhodesiense STIB 900
The bloodstream form trypomastigotes were maintained in MEM medium with Earle's salts supplemented with 25 mM HEPES, lg/1 additional glucose, lOml/1 MEM non-essential aminoacids (10Ox), 0.2 mM 2-mercaptoethanol, 2mM Na-pyravate, O.lmM hypoxanthine, 0.05mM bathocuprionedisulphomc acid, 0.15mM L-cysteine and 15% heat inactivated, foetal calf serum. All cultures and assays were conducted at 370C under an atmosphere of 5% CO2 /95% air mixture. Drug sensitivity assays
Stock drug solutions were prepared in 100% DMSO (dimethylsulfoxide) unless otherwise suggested by the supplier at 20 mg/ml, and ball milled or sonicated if necessary. The stocks were kept at 4°C. For the assays, the compound was further diluted to the appropriate concentration using complete medium.
Assays were performed in sterile 96-well microtiter plates, each well containing 100 μl of parasite culture (1 x 104 bloodstream forms) with or without serial drug dilutions at 37°C for 72 h in 5% CO2. The highest concentration for the test compounds was 30 μg/ml. Each drug was tested in triplicate. A 3 -fold serial dilution was performed down to a suitable concentration to obtain an IC50 value. Initial testing was conducted at 30, 10, 3 and 0.1 μg/ml. The positive control drug was Pentamidine, which was diluted down to 0.0001 μg/ml (12 dilutions). Negative control wells were without drug, blanks were medium only. After 72h of incubation the plates were inspected under an inverted microscope to assure growth of the controls and to determine the minimum inhibitory concentration (MIC): this was the lowest drug concentration at which no trypanosomes with normal morphology and motility as compared to the control wells, were seen.
20μl of Alamar Blue were added to each well and the plates incubated for another 2-4L Then the plates were read on a Gemini Plate Reader (Molecular Devices) using an excitation wave length of 530 nm and an emission wave length of 580 nm (cut off 550nm).
Primary screen
A preliminary screen used the Trypanosoma brucei rhodesiense STIB 900 strain. The compounds were tested at 4 concentrations (drug concentration range from 30 μg/ml to 1 μg/ml in 3-fold dilutions). In this assay pentamidine had an ED50 value of 0.1 to 0.02ng/ml.
Results for antitrypanosomal (T. Brucei) (bloodstream form) testing are shown in Table 3, below. Table 3 In vitro antiprotozoal activity of purine analogues
Figure imgf000030_0001
Figure imgf000031_0001
*Parasite burden was heavy which a ected the D50 of the Pentastam.
Example 3
In vitro anti-Leishmania testing Leishmania donovani: in vitro assay Parasite and cell cultures:
Leishmania donovani MHOM/ET/67/HU3 strain (also known as LV9 or L82) was used. The strain was maintained in the Syrian Hamster (Mesocricetus auratus). Amastigotes were collected from the spleen of an infected hamster and spleen parasite burden was assessed using the Stauber technique and by Thoma™ haemocytometer. Primary peritoneal mouse (CDl) macrophages were collected by lavage, two days after induction with i.p. injection of 2ml 2% soluble starch. All cultures and assays were conducted at 37°C under an atmosphere of 5% CO2/95% air mixture.
Drug sensitivity assays
Assays were performed in sterile 16-well tissue culture slides. 100 μl of RPMI1640 medium, supplemented with 10% heat inactivated fetal calf serum containing 4xlO5/ml peritoneal macrophages were added/well and left for 24 hours at 370C in 5% 00^195% air mixture. After this period lOOμl of amastigotes, suspended in the same medium, were added at a given ratio of 7 amastigotes: 1 macrophage. After a further 24 h, prior to the addition of drug, one slide was methanol fixed and Giemsa stained to determine a suitable infection level.
20 mg/ml compound stock solutions were prepared as advised by the supplier, or dissolved in 100% DMSO. Stock solutions were kept at 40C (unless otherwise advised) for 2-3 weeks in the dark. The compounds were diluted to 30 μg/ml in RPMI 1640 +10% heat inactivated fetal calf serum prior to addition to the assay and a three-fold series of dilutions made. 72 h after the addition of compound, the medium was replaced with fresh drag containing medium.
After 5 days of incubation with the compounds, parasite growth was microscopically assessed after methanol fixation and staining with a 10% Giemsa solution. The levoi of infection/well was evaluated by counting the number of infected macrophages per 100 macrophages. Parasite growth was compared to untreated control wells (100% parasite growth). The results were expressed as % reduction in parasite burden compared to control wells. Data were analysed by Microsoft xl/fit and ED50/ED90 (with 95% confidence limits) values determined.
Primary screen
The compounds were tested in quadruplicate at 4 concentrations (30 - 10 - 3 - 1 μg/ml). Pentostam® (sodium stibogluconate) or another pentavalent antimonial was included as the " reference drug. Sodium stibogluconate normally gives an ED50 value of between 5-10 μg Sb7ml.
The results for anti-leishmania (promastigotes) testing are shown in Table 3 below.
Example 4 Synthesis
In general, compounds according to the present invention were synthesised by reaction of an appropriate hydroxylamine derivative or hydrazine derivative with a halogeno-substituted purine or purine analogue. High resolution mass spectra were recorded on a Bio-Apex H FT- ICR spectrometer. 1H-Nuclear Magnetic Resonance (NMR) spectra were recorded at 300 MHz on a Bruker DRX300 instrument whilst 13C-NMR spectra were recorded at 125 MHz on a Bruker DRX500 instrument. Unless stated otherwise, deuterated MeOH was used as the n.m.r. solvent with tetramethylsilane (TMS) as the internal standard. Chemical shifts (δ) are given in parts per million (p. p.m.) downfield from TMS. The following abbreviations are used: s - singlet, d = doublet, t = triplet, q = quartet, m = multiplet, dd = doublet of doublets, dt = doublet of triplets and app. dt = apparent doublet of triplets. All coupling constants are given in Hertz (Hz). Thin-layer chromatography (tic.) plates with plastic backing coated with Merck Kieselgel PF254 were used. Flash chromatography used Merck Kieselgel 60 (230 - 400 mesh) with an eluent flow rate of ca. 5 mL/min being maintained by air pressure. All commercially available reagents were used as received and where appropriate anhydrous quality material was purchased. The term ether refers to diethyl ether. All compounds are named according to the IUPAC system and were obtained using the ACD/ILAB web service (http : //www, acdlab s . com) .
Example 5
Synthesis of purine nucleobase analogues according to general Formula IA (Zi = H).
(See Figure 3)
General Procedure for the synthesis of purine analogues
To a solution of 6-chloro purine or 2-amino 6-chloropurine (1.0 eq.) in EtOH : H2O - 1 : 1, in a sealed tube, nucleophile (10 eq.) was added. The reaction mixture was stirred at 4O0C until the reaction was complete (monitoring by TLC). The crude reaction mixture was then evaporated under reduced pressure and then recrystallised in a mixture of dioxane, diethylether and methanol. After filtration the white solid crystals were collected and characterised.
iV6-Hydroxy-9JHr-purin-6-amine (JA32) (A. Giner-Sorolla and A. Bendich, J. Am. Chem. Soc, 1958, SO, 3932)
Prepared by general procedure from 6-chloropurine (0.25 g, 1.61 mmol) and hydroxylamine (50% in water) (3 mL) in water (5 mL) heated at 6O0C for 0.5 h to give product (0.168 g, 87 %) as a white solid; δH (DMSO) 12.45 (IH, br. s, OH)3 10.91 (IH, br. s, NH), 9.44 (IH, br. s, NH), 8.09 (IH, s, ArH), 7.96 (IH, s, ArH).
6-Hydrazino-9i?-purine (JA33) (J. A. Montgomery and L. B. Holum, J. Am. Chem. Soc, 1957, 79, 2185; J. A. Montgomery and C. Temple, J. Am. Chem. Soc, 1961, 83, 630) δH (DMSO) 12.77 (IH, br. s, NH), 8.69 (IH, br. s, NH), 8.18 (IH, s, ArH), 8.09 (IH, s, ArH), 4.60 (2H, s, NH2).
6-Kydrazino-9i?-purin~2~aπϊiϊiε (JA34) (J. A. Montgomery and L. B. Holum, J. Am.
Chem. Soc, 1957, 79, 2185) δH (DMSO) 12.06 (IH, br. s, NH), 8.22 (IH, s, ArH), 7.73 (IH, s, ArH), 5.73 (2H, s, NH2).
6-(l-Methylhydrazino)-9Zr-purine (JA35) (A. Giner-Sorolla et al, J. Med. Chem., 1968, 11, 521) Prepared by general procedure from 6-chloropurine (0.2O g, 1.29 mmol) and JV- methylhydrazine (1 mL) in water (5 mL) heated at 9O0C for 12 h to give product (0.213 g, 87 %) as a white solid; δH (DMSO) 8.18 (IH5 s, ArH), 8.09 (IH, s, ArH), 3.41 (3H, s, NMe).
6-(l-Methylhydrazino)-9iJ-purin-2-amme (JA36) (A. Giner-Sorolla etal, J. Med Chem.,
1968, 11, 521) δH (DMSO) 7.88 (IH, s, ArH), 6.67 (2H, s, NH2), 3.41 (3H, s, NMe).
Λ^-Methoxy-A^-methyl-9iy-purin-6-amine (JA37) (T. Fujii etal, Chem. Pharm. Bull,
1983, 31, 3149)
Prepared by general procedure from 6-chloropurine (1.08 g, 7.0 mmol) and N,O- dimethylhydroxylamine hydrochloride (2.73 g, 28.0 mmol) with triethylamine (3.54 g, 35 mmol) in 1-butanol (14 mL) heated under reflux for 4 h to give product (1.07 g, 86 %) as a pale yellow solid; 5H (DMSO)
Λ^-Methoxy-9iϊ-purine-2,6-diamine (JA38)
Prepared by general procedure from 2-arαino-6-chloropurine (0.47 g, 2.79 mmol) and methoxylamine (1.31 g, 27.9 mmol) in EtOHH2O (1:1) (10 mL) heated at 60°C for 24 h to give product (0.45 g, 90 %) as a pale greyish solid; δH (DMSO) 8.25 (IH, s, ArH), 7.31 (2H, s, NH2), 3.80 (3H, s, OMe); m/z (HRMS) Found: (M+Na)+, 203.0664, C6H8N6O requires (M+Na)+ 203.0657, deviation 3.4 ppm.
Figure imgf000035_0001
(JA39) (A. Giner-Sorolla et al, J. Med Chem., 1968, 11, 521)
Prepared by general procedure from 6-chloropurine (1.00 g, 6.47 mmol) and methoxylamine (6.00 g, 127 mmol) in 1-butanol (100 mL) heated at 70-800C for 12 h to give product (0.91 g, 85 %) as a pale yellow solid; δH (DMSO) 8.11 (IH, s, ArH), 7.75 (IH, s, ArH), 3.77 (3H, s, OMe); UV X1113x (urn) (10% MeOH Ui H2O) 273 (ε = 13100). pH 1, W 275 (ε = 13000). pH 7, W271.
N5-Hydroxy-9jff-purine-2,6-diamine (JA41) Prepared by general procedure from 2-amino-6-chloropurine (0.50 g, 2.98 mmol) and hydroxylamine (50% in water) (0.91 mL, 29.8 mmol) in EtOH:H2O (1:1) (10 roL) heated at 6O0C for 24 hto give product (0.39 g, 78 %) as a white solid; δH (DMSO) 9.54 (IH, s, NH), 7.65 (IH, s, ArH), 6.41 (2H, s, NH2); m/z (HRMS) Found: (M+H)+, 167.0687, C5H6N6O requires (M+H)+ 167.0681, deviation 3.2 ppm.
iV6-Methoxy-N6-methyI-9H;-purine-2,6-diamine (JA42)
Prepared by general procedure from 2-amino-6-chloropurine (0.58 g, 3.56 mmol) and N1O- dimethylhydroxylamine (2.17 g, 35.6 mmol) in EtOΗ:Η2O (1:1) (10 mL) heated at 6O0C for 24 h to give product (0.16 g, 24 %) as a white solid; δH (DMSO) 7.96 (IH, s, ArH), 3.86 (3H, S, OMe), 3.45 (3H, s, NMe); m/z (HRMS) Found: (M+H)+, 195.0990, C7H10N6O requires (M+H)+ 195.0994, deviation -2.0 ppm.
/V'-benzyloxyadenine (JA54)
Prepared by general procedure from 6-chloropurine (0.99 g, 6.41 mmol) and O- benzylhydroxylamine hydrochloride (5.57 g, 34.9 mmol) in Et0H:H2O (1:1) (20 mL) and diisopropylethylamine (6.0 mL, 34.6 mmol), heated at 6O0C for 24 h to give product (0.75 g, 48 %) as a white solid; m/z (HRMS) Found: (M+Na)+, 264.0858, C12H11N5ONa requires (M+Na)+ 264.0861, deviation -1.3 ppm.
Example 6: Synthesis of purine nucleoside analogues according to general Formula IA
(Zi = ribose). (See Figure 4)
General Procedure for the synthesis of purine analogues
To a solution of 6-chloro purine riboside or 2-amino 6-chloropurine riboside (1.0 eq.) in EtOH : H2O - 1 : 1, in a sealed tube, nucleophile (10 eq.) was added. The reaction was allowed to stir at 4O0C until reaction was complete (monitoring by TLC). The crude reaction mixture was then evaporated under reduced pressure and then recrystallised in a mixture of dioxane, diethylether and methanol. After filtration the white solid crystals were collected and characterised.
2-Amino-N^amino-N6-methyladenosine (JA23) (T. Naito et al, Chem. Pharm. Bull., 1964, 12, 951) Prepared by general procedure from 2-amino-6~chloropurine riboside (0.50 g, 1.66 mmol) and N-methyl hydrazine (0.89 mL, 16.6 mmol) in EtOH : H2O - 1 : 1 (10 mL) to give product (0.43 g, 83 %) as a white solid; δH (DMSO) 7.95 (IH, s, ArH), 5.88 (2H, br. s, NH2), 5.74 (IH, d, J6.1, V-K), 5.39 - 5.33 (2H, m, 2'-OH, 5'-OH), 5.12 (IH, d, J4.6, 3'-OH), 4.46 (IH, dd, J 11.4, 5.9, 2'-H), 4.08 (IH, m, 3'-H), 3.88 (IH, m, 4'-H), 3.62 (IH, dt, J 12.0, 4.2, 5'-Ha), 3.55 - 3.41 (4H, m, 5'-Hb and NMe); δc (DMSO) 159.7, 154.4, 152.6, 135.5, 113.2, 87.2, 85.8, 73.6, 71.1, 62.0, 49.0; m/z (HRMS) Found: (M+H)+, 312.1422, C11Hi7N7O4 requires (M+H)+ 312.1420, deviation 0.6 ppm. UV W (nm) (10% MeOH in H2O) 288 (ε = 12100), λ^ 250. pH 1, W 297 (ε = 12200), 256 (ε = 11200), A^1n 274, 237. pH 12, ^ax 287 (ε.= 13400), ?w 251. ε260 (M) 8500.
2-Araino-N6-amino-adenosine (JA24) (T. Naito et al, Chem. Pharm. Bull, 1964, 12, 951) Prepared by general procedure from 2-amino-6-chloropurine riboside (0.56 g, 1.85 mmol) and hydrazine monohydrate (0.90 mL, 16.6 mmol) in EtOH : H2O- 1:1 (10 mL) to give product (0.49 g, 90 %) as a white solid; δH (DMSO) 8.55 (IH, br. s, OH), 7.93 (IH, s, ArH), 5.90 (2H, s, NH2), 5.75 (IH, d, J 6.3, l'-H), 5.43 (IH, dd, J 6.6, 4.9, 5'-OH), 5.39 (IH, d, J 6.3, 2'-OH), 5.13 (IH, d, J4.5, 3'-OH), 4.52 (IH, dd, J 11.3, 6.1, 2'-H), 4.46 (2H, br. s, NH2), 4.11 (IH, dd, J 7.7, 4.6, 3'-H), 3.92 (IH, dd, J 6.7, 3.5, 4'-H), 3.66 (IH, dt, J 12.2, 4.2, 5'-Ha), 3.54 (IH, ddd, J 12.2, 6.6, 4.0, 5'-Hb); δc (DMSO) 160.3, 156.3, 151.4, 136.3, 112.9, 87.3, 85.9, 73.7, 71.1, 62.1; m/z (HRMS) Found: (M+H)+, 298.1259, Ci0H15N7O4 requires (M+H)+ 298.1264, deviation -1.7 ppm. UV W (nm) (10% MeOH in H2O) 282 (ε = 12300), 260 (ε = 9200), 7^n 265, 242. pH 1, W 290 (ε = 10700), 254 (ε = 9600), λ^ 271, 236. pH 12, λmax282 (ε = 11600), W 243. ε260 (M) 9200.
N5-Arninoadenosine (JA25) (R. N. Prasad and R. K. Robins, J. Am. Chem. Soc, 1957, 79, 6401; J. A. J. Johnson et al, J. Am. Chem. Soc, 1958, 80, 699)
Prepared by general procedure from 6-chloropurine riboside (0.69 g, 2.41 mmol) and hydrazine monohydrate (1.17 mL, 24.1 mmol) in EtOH : H2O- 1:1 (10 mL) to give product (0.57 g, 84 %) as a white solid; δH (DMSO) 9.03 (IH, br. s, NH), 8.34 (IH, s, ArH), 8.23 (IH, s, ArH), 5.88 (IH, d, J 6.2, l'-H), 5.45 (IH, d, J 6.3, 2'-OH), 5.40 (IH, dd, J7.0, 2.3, 5'-OH), 5.20 (IH, d, J4.6, 3'-OH), 4.58 (IH, app t, J 5.4, 2'-H), 4.13 (IH, dd, J7.8, 4.6, 3'- H), 3.95 (IH, dd, J 6.4, 3.3, 4'-H), 3.66 (IH, m, 2, 5'-Ha), 3.53 (IH, m, 5'-Hb), 3.34 (2H, s, MI2); δc (DMSO) 155.9, 152.7, 148.7, 140.1, 118.9, 88.3, 86.3, 73.9, 71.0, 62.0; m/z (HRMS) Found: (M+H)+, 283.1154, Ci0Hi5N6O4 requires (M+H)+ 283.1155, deviation -0.3 ppm.
Λ^-Methoxyadenosine (JA26) (A. Giner-Sorolla et al, J. Med. Chem., 1968, 11, 521; T. Fujii etal, Chem. Pharm.. Bull., 1973, 21, 1676; T. Fujϋ et al, Chem. Pharm. Bull, 1987, 35, 4482)
Prepared by general procedure from 6-chloropurine riboside (0.57 g, 2.00 mmol) and methoxylamine (0.93 g, 20.0 mmol) in EtOH : H2O- 1:1 (10 mL) to give product (0.33 g, 55 %) as a white solid; δH (DMSO, D2O shake) 8.21 (IH, s, ArH), 7.76 (IH, s, ArH), 5.78 (IH, d, J5.8, 1'-H)3 4.45 (IH, app t, J 5.4, 2'-H), 4.09 (IH, app t, J4.2, 3'-H), 3.91 (IH, app q, J3.6, 4'-H), 3.75 (3H, s, OMe), 3.62 (IH, dd, J 12.0, 3.8, 5'-Ha), 3.51 (IH, dd, J 12.0, 3.9, 5'-Hb); δc (DMSO) 164.6, 153.4, 146.4, 138.6, 118.5, 87.9, 86.0, 74.4, 70.7, 62.1, 61.8; m/z (BiRMS) Found: (M+H)+, 298.1171, CnHi5N5O5 requires (M+H)+ 298.1165, deviation 2.1 ppm; UV A^13x (nm) (10% MeOH in H2O) 268 (ε = 13200), λ^ 236. pH 1, λ»aχ 267 (ε = 18300), λ^ 235. pH 12, λmax280 (ε - 14700), A^n 241. ε260 (M) 11700.
N6-Amino-N6-methyladenosine (JA27) (A. Giner-Sorolla et al, J. Med. Chem., 1968, 11, 521)
Prepared by general procedure from 6-chloropurine riboside (0.53 g, 1.85 mmol) and N- methylhydrazine (1.0 mL, 18.5 mmol) in EtOH : H2O- 1:1 (10 mL) to give product (0.46 g, 85 %) as a white solid; δH (DMSO) 8.37 (IH, s, ArH), 8.19 (IH, s, ArH), 5.89 (IH, d, J 6.0, l'-H), 5.56 (2H, br. s, NH2), 5.46 (IH, d, J 6.2, 2'-OH), 5.38 (IH, dd, J 6.8, 4.7, 5'-OH), 5.20 (IH, d, J4.7, 3'-OH), 4.57 (IH, dd, J 11.2, 5.9, 2'-H), 4.13 (IH, dd, J 8.0, 4.6, 3'-H), 3.95 (IH, m, 4'-H), 3.70 - 3.50 (5H, m, 5'-Ha, 5'-Ek, NMe); δc (DMSO) 153.9, 152.2, 149.9, 139.0, 119.0, 88.3, 86.2, 74.0, 71.0, 62.0, 37.5; m/z (HRMS) Found: (M+H)+, 297.1315, CnHi6N6O4 requires (M+H)+ 297.1311, deviation 1.3 ppm. UV W (nm) (10% MeOH in H2O) 275 (s = 14300), ^ 236. pH 1, ^ax267 (ε = 15500), λ^ 234. pH 12, X1^x 276 (ε = 13000), K 1 n^ 238. ε260 (M) 9500.
/Λ^-Hydroxyadenosπie (JA28) (A. Giner-Sorolla et al, J. Med. Chem., 1968, 11, 521; J. -L. G. Montero et alJ. Het Chem., 1977, 14, 483) Prepared by general procedure from 6-chloropurine riboside (0.56 g, 1.94 mmol) and N- hydroxylamine (50% solution in water) (1.2 mL, 19.4 mmol) in EtOH ; H2O- 1:1 (10 mL) to give product (0.43 g, 77 %) as a white solid; δc (DMSO) 157.0, 148.6, 146.3, 139.2, 124.9, 87.9, 86.1, 74.2, 70.9, 62.0; m/z (HRMS) Found: (M+H)+, 284.0995, C10H13N5O5 requires (M+H)+ 284.0995, deviation 0.0 ppm. UV A^x (urn) (10% MeOH in H2O) 265 (ε = 11900), λmitt 231. pH 1, ;W265 (ε = 17700), λmin 232. pH 12, W 295 (ε = 10100), Xn^ 241. ε260 (M) 12300.
2-Amino-Λ^-hydroxyadenosiπe (JA30) (T. Naito et al, Chem. Pham. Bull, 1964, 12, 951) Prepared by general procedure from 2-amino-6-chloropurine riboside (0.64 g, 2.11 mmol) and N-hydroxylamine (1.3 mL, 21.1 mmol) in EtOH : H2O- 1:1 (10 mL) to give product (0.43 g, 69 %) as a white solid; δH (DMSO) 10.00 (IH, br. s, NH), 7.98 (IH, s, ArH), 6.82 (IH, br. s, OH), 5.67 (IH, d, 75.9, l'-H), 5.41 (IH, d, 76.1, 2'-OH), 5.14 (IH, br. s, 3'-OH), 4.39 (IH, app. t, J 5.4, 2'-H), 4.07 (IH, app. t, J4.1, 3'-H), 3.87 (IH, dd, J7.3, 3.7, 4'-H), 3.60 (IH, dd, J 12.0, 3.9, 5'-Ha), 3.50 (IH, dd, J 12.0, 3.9, 5'-Hb), 3.34 (2H, br. s, NH2); δc (DMSO) 163.0, 153.5, 148.0, 136.4, 110.7, 87.1, 85.7, 74.1, 70.8, 61.8; m/z (HRMS) Found: (M+H)+, 297.1103, C10H14N6O5 requires (M+H)+ 299.1104, deviation -0.3 ppm. UV X1113x (nm) (10% MeOH in H2O) 281 (ε = 10900), λ^ 242. pH 1, W 294 (ε = 10900), 257 (ε = 11200), λmin 274, 237. pH 12, W 296 (ε = 10800), Kn^ 261. ε260 (M) 9200.
2-Amino-Λ^-methoxy adenosine (JA31) (K. Miura et al, Chem. Pharm. Bull, 1975, 23, 464; T. Ueda et al, Chem. Pharm. Bull, 1978, 26, 2122)
Prepared by general procedure from 2-amino-6-chloropurine riboside (0.52 g, 1.71 mmol) and methoxylamine (0.80 g, 17.1 mmol) in EtOH : H2O- 1:1 (10 mL) to give product (0.34 g, 63 %) as a white solid; δH (DMSO) 8.31 (IH, s, ArH), 7.04 (2H, s, NH2), 5.70 (IH, d, J 5.2, l'-H), 5.40 (3H, br. s, 3x OH), 4.37 (IH, app. t, J 5.0, 2'-H), 4.09 (IH, app. t, J 4.4, 3'- H), 3.89 (IH, dd, J 7.3, 3.6, 4'-H), 3.78 (3H, s, OMe), 3.63 (IH, dd, J 12.0, 3.6, 5'-Ha), 3.53 (IH, dd, J 12.0, 3.7, 5'-Hb); δc (DMSO) 164.7, 153.3, 147.0, 135.7, 108.3, 87.5, 85.7, 74.3, 70.4, 62.7, 61.4; m/z (HRMS) Found: (M+H)+, 313.1266, CnH16N6O5 requires (M+H)+ 313.1260, deviation 1.8 ppm. UV IW (nm) (10% MeOH hi H2O) 280 (ε = 14800), λ^ 242. pH 1, W 297 (ε = 13100), 256 (ε = 10900), X111In 273, 239. pH 12, ^3x 288 (ε = 19200), λπώι 253. ε260 (M) 10500.
2-Amino-iV~methoxy-N-methyIadenosme (JA40)
Prepared by general procedure from 2-amino-6-chloropurine riboside (0.30 g, 0.98 mmol) and ΛζO-dimethylhydroxylamine (0.60 g, 9.8 mmol) in EtOH:H2O (1:1) (10 mL) heated at 6O0C for 24 h to give product (0.16 g, 50 %) as a white solid; δH (DMSO, D2O wash) 8.49 (IH, s, ArH), 5.78 (IH, d, J 5.3, 1'-H)5 4.40 (IH, app t, J 5.1, 2'-H), 4.12 (IH, app t, J 4.4, 3'-H), 3.92 (IH, m, 4'-H), 3.87 (3H, s, OMe), 3.80 (3H, s, NMe), 3.65 (IH, dd, J 12.0 and 3.8, 5'-Ha), 3.54 (IH, dd, J 12.0 and 3.75 5'-Ht); m/z (HRMS) Found: (M+H)+, 327.1418, C12H18NgO5 requires (M+H)+ 327.1417, deviation 0.2 ppm.
Λ^-Methoxy-jV^-methyladenosine (JA43) (T. Fujii and T. Saito, Chem. Pharm. Bull, 1990, 38, 1886)
Prepared by general procedure from 6-chloropurine riboside (0.80 g, 2.82 mmol) and N1O- dimethylhydroxylarnine (1.75 g, 28.2 mmol) in EtOH:H2O (1:1) (10 mL) heated at 6O0C for 24 h to give product (0.63 g, 72 %) as a white solid; δH (DMSO) 8.85 (IH, s, OH), 8.61 (IH, s, ArH), 8.51 (IH, s, ArH), 5.93 (IH, d, J 7.0, l'-H), 5.46 (IH, s, OH), 5.20 (IH, s, OH), 4.56 (IH, m, 2'-H), 4.14 (IH, m, 3'-H), 3.95 (IH, m, 4'-H), 3.85 (3H, S, OMe), 3.68- 3.33 (5H, m, NMe, 5'-H4 and 5'-Hb); m/z (HRMS) Found: (M+H)+, 312.1316, Ci2Hi7N5O5 requires (M+H)+ 312.1308, deviation 2.7 ppm.
JV^-Phenylamino-adenosine (JA57)
Prepared by general procedure from 6-chloropurine riboside (0.50 g, 1.73 mmol) and phenylhydrazine (1.7 mL, 17.3 mmol) in EtOH: H2O (1:1) (10 mL), heated at 6O0C for 24 h to give a mixture of regioisomers (JA57, 0.39g, 63%) and its corresponding isomer (30%) as a yellow solid; m/z (HRMS) Found: (M+H)+, 359.1465, Ci6H18N6O4 requires (M+H)+ 359.1468, deviation -0.8 ppm.
iV^allyloxyadenosine (JA58)
Prepared by general procedure from 6-chloropurine riboside (1.1324 g, 3.95 mmol) and O- aUylhydroxylamine hydrochloride (2.60 g, 23.7 mmol) in EtOH (10 mL) and dϋsopropylethylamine (5.5 mL, 31.6 rαmol), heated at 6O0C for 24 h to give product (0.67 g, 53 %) as a white sohd; m/z (HRMS) Found: (M+H)+, 324.1307, C13H18N5O5 requires (MHH)+ 324.1308, deviation -0.4 ppm.
iV^-benzyloxyadenosine (JA59)
Prepared by general procedure from 6-chloropurine riboside (0.43 g, 1.5 mmol) and O- benzylhydroxylamine hydrochloride (1.0 g, 6.3 mmol) in EtOH:H2O (1:1) (10 mL) and triethylamine (1.5 mL, 10.5 mmol), heated at 6O0C for 24 hto give product (0.26 g, 46 %) as a white sohd; m/z (HRMS) Found: (M+Na)+, 396.1276, C17H19N5O5Na requires (MfNa)+ 312.1284, deviation -1.9 ppm.
2-Amino-N6-benzyIoxyadenosine (JA60)
Prepared by general procedure from 2-amino-6-chloropurine riboside (0.59 g, 1.95 mmol) and O-benzylhydroxylamine hydrochloride (1.86 g, 11.7 mmol) in EtOH: H2O (1:1) (10 mL) and diisopropylethylamme (2.71 mL, 15.6 mmol), heated at 6O0C for 24 h to give product (0.68 g, 90 %) as a white sohd; m/z (HRMS) Found: (M+H)+, 389.1574, C17H21N6O5 requires (M+H)+ 389.1573, deviation 0.1 ppm.
Example 7: Synthesis of purine nucleoside 5'-triphosphates analogues according to general Formula IA (Zi = ribose, 5'-triphosphate). (See Figure 5) General Procedure for the synthesis of purine analogues 2-Amino-6-chloropurine riboside-5'-triphosphate
To an ice-cold solution of 2-Amino-6-chloropurine riboside (0.481 g, 1.59 mmol) and proton sponge (0.511 g, 2.38 mmol) in trimethyl phosphate (8 mL) was added phosphoryl chloride (178 μL, 1.91 mmol) and the solution stirred at 0°C for 5 hours. To this was added simultaneously tributylamine (1.5 mL) and tetrabutylammonium pyrophosphate solution (0.5 M in DMF, 6.36 mL), and the solution stirred for a further 30 minutes. The reaction was then quenched by the addition of 0.5 M TEAB buffer (10 mL), and stored at 40C overnight. The solution was evaporated to dryness and re-dissolved in water (20 mL) and applied to a Sephadex A25 column in 0.05 M TEAB buffer. The column was eluted with a linear gradient of 0.05-1.0 M TEAB. Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 27 %). HPLC (Phenomenex Luna lOμ C- 18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 25% to 100% buffer B over 45 minutes at 8 mL/min.) showed the product to be pure, δy (D2O) γ-P -9.1 (d); α-P -10.3, (d); β-P -22.1, (t).
6-Chloropuήne riboside-5'-triphosphate
To an ice-cold solution of 6-chloro purine riboside (0.503 g, 1.75 mmol) and proton sponge (0.562 g, 2.62 mmol) in trimethyl phosphate (9 mL) was added phosphoryl chloride (196 μL, 2.10 mmol) and the solution stirred at 0°C for 5 hours. To this was added . simultaneously tributylarnine (1.7mL) and tetrabutylammonium pyrophosphate solution (0.5 M in DMF, 7 mL), and the solution stirred for a further 30 minutes. The reaction was then quenched by the addition of 0.5 M TEAB buffer (10 mL), and stored at 4°C overnight. The solution was evaporated to dryness and re-dissolved in water (20 mL) and applied to a Sephadex A25 column in 0.05 M TEAB buffer. The column was eluted with a linear gradient of 0.05-1.0 M TEAB. Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 26 %). HPLC (Phenomenex Luna lOμ C-18 reverse phase column, buffer A7 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 25% to 100% buffer B over 45 minutes at 8 mL/min.) showed the product to be pure. δP (D2O) γ-P -5.4, (d); α-P -10.3, (d); β-P -21.5,
(t).
iV^-Hydroxyadenosine 5' -triphosphate (JA44)
To a solution of 6- chloropurine riboside 5' -triphosphate (90.6 μmol) in water (2 mL), hydroxylamine (50% w/v in water, 100 μL) was added and resulting mixture was heated at 4O0C for 3 h. The crude product was then purified by HPLC (Phenomenex Luna lOμ C-18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 0 % to 40% buffer B over 45 minutes at 8 mL/min.). Appropriate fractions were pooled and evaporated to dryness to give desired product as a white soUά (yield 58 %). The title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na+ form). δP (D2O) γ-P -8.0, (d); α-P -10.0, (d); β-P -21.3, (t).
iV^-methoxyadenosme 5'-triphosphate (JA45)
To a solution of 6- chloropurine riboside 5' -triphosphate (45.3 μmol) in water (1 mL), methoxyamine (100 μL) was added and resulting mixture was heated at 4O0C for 16 h. The crude product was then purified by HPLC (Phenomenex Luna lOμ C- 18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 0 % to 40% buffer B over 45 minutes at 8 mL/min.). Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 26 %). The title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na+ form). δP (D2O) γ-P - 7.3, (d); otrP -11.8, (d); β-P -23.1, (t).
N6-Amino-N6-methyIadenosine 5' -triphosphate (JA46)
To a solution of 6- chloropurine riboside 5' -triphosphate (94.0 μmol) in water (2 mL), methylhydrazine (100 μL) was added and resulting mixture was heated at 4O0C for 16 h. The crude product was then purified by HPLC (Phenomenex Luna lOμ C- 18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 0 % to 40% buffer B over 45 minutes at 8 mL/min. ). Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 48 %). The title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na+ form), δp (D2O) γ-P - 7.1, (d); α-P -9.9, (d); β-P -21.0, (t).
l-Amino-Λ^-hydroxyadenosine 5' -triphosphate (JA47)
To a solution of 2-amino 6- chloropurine riboside 5' -triphosphate (85.2 μmol) in water (3 mL), hydroxylamine (50% w/v in water, 100 μL) was added and resulting mixture was heated at 4O0C for 3 h. The crude product was then purified by HPLC (Phenomenex Luna lOμ C- 18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 0 % to 40% buffer B over 45 minutes at 8 mL/min.). Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 52 %). The title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na+ form). δP (D2O) γ-P -8.7, (d); α-P -10.1, (d); β-P -21.6, (t).
l-Amino-Λ^-methoxyadenosine 5' -triphosphate (JA48)
To a solution of 2-amino 6- chloropurine riboside 5' -triphosphate (86.4 μmol) in water (2 mL), methoxyamine (100 μL) was added and resulting mixture was heated at 4O0C for 16 h. The crude product was then purified by HPLC (Phenomenex Luna lOμ C- 18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0,1 M TEAB, 25% MeCN. O % to 40% buffer B over 45 minutes at 8 mL/min.). Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 32 %). The title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na+ form), δp (D2O) γ-P - 6.2, (d); α-P -9.8, (d); β-P -20.8, (t).
2-Amino-N6-amino-adenosine 5' -triphosphate (JA49)
To a solution of 2-amino 6- chloropurine riboside 51 -triphosphate (85.2 μmol) in water (3 mL), hydrazine monohydrate (100 μL) was added and resulting mixture was heated at 4O0C for 3 h. The crude product was then purified by HPLC (Phenomenex Luna lOμ C- 18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 0 % to 40% buffer B over 45 minutes at 8 mL/min.). Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 35 %). The title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na+ form), δp (D2O) γ-P -8.8, (d); α-P -10.O3 (d); (S-P -21.6, (t).
2-Amino-N6-amino-N6-methyIadenosine 5' -triphosphate (JA50)
To a solution of 2-amino 6- chloropurine riboside 5' -triphosphate (85.2 μmol) in water (3 mL), methylhydrazine (100 μL) was added and resulting mixture was heated at 4O0C for 16 h. The crude product was then purified by HPLC (Phenomenex Luna lOμ C-18 reverse phase column, buffer A, 0.1 M TEAB; buffer B, 0.1 M TEAB, 25% MeCN. 0 % to 40% buffer B over 45 minutes at 8 mL/min.). Appropriate fractions were pooled and evaporated to dryness to give desired product as a white solid (yield 83 %). The title compound was converted into its sodium salt by passage through a Dowex 50WX4-200 resin (Na+ form), δp (D2O) γ-P -7.1, (d); α-P -9.9, (d); β-P -21.0, (t).
Example 8: Synthesis of pyrrolopyrimidine and purine nucleoside analogues according to general Formula IBA. (See Figure 6)
General synthesis of pyrrolopyrimidine analogues is well described in the literature. Treatement of O-6 chloro derivatives with hydroxylamine and hydrazine derivatives leads to compounds of general Formula IA. Ex 9.1 is prepared from 2-methylthio-6-chloroρyrrolopyrimidine with hydroxylamine as described above.
Ex 9.2 is prepared 2-methylsulfonyl-6-cliloroρyrrolopyrimidine with hydroxylamine as described above.
Ex 9.3 is prepared from Ex 9.1 by treatment with phenylsulfonyl chloride.
Ex 9.4 is the 2'-deoxynucleoside derivative of JA28. It is prepared by the action of hydroxylamine on 6-chloropurine-2'-deoxyriboside.
Ex 9.5 where R is H or methyl or ribose is prepared according to the general method described by Adamiak (R. W. Adamiak et al, (1985), Nucleic Acids Res., 13, 2989).
Example 9: Synthesis of purine nucleoside analogues according to general Formula IB.
(See Figure 7)
General synthesis of analogues is as described above, viz reaction of a halogeno-modified nucleobase or nucleoside with hydroxylamine or hydrazine derivatives.
Ex 10.1-10.3 are prepared from the corresponding 7-iodo derivatives (purine numbering) by the action of hydroxylamine.
Ex 10.4-10.6 are prepared from the corresponding 7-iodo derivatives (purine numbering) by the action of hydrazine.
Ex 10.7 is prepared by the action of methyl hydrazine on the corresponding 7-iodo derivative
(purine numbering) of 2'-deoxypyrazolopyrimidine.
Example 10: Synthesis of purine nucleoside analogues according to general Formula
IC. (See Figure 8)
General synthesis of analogues is as described above, viz reaction of a C2-halogeno- modified nucleobase or nucleoside with hydroxylamine or hydrazine derivatives.
Ex 11.1 is prepared by the action of methyl hydrazine on 2'-deoxy-2-chloroadenoisne.
Ex 11.2 is prepared by the action of methylhj^droxylamine on 2'-deoxy-2-chloroadenoisne.
Ex 11.3 is prepared by the action of methyl hydrazine on 2'-deoxy-2-chloroinosine.
Ex 11.4 is prepared by the action of methylhydroxylamine on 2'-deoxy-2- chloroinosine.
Example 11: Synthesis of purine nucleoside analogues according to general Formula
ID. (See Figure 9) Compounds were prepared as described by Cohen (H.M. Cohen et al, (2005), Org. Biσmol. Chem. 3, 152).
Example 12: Synthesis of purine nucleoside analogues according to general Formula
IE. (See Figure 10)
Methyl-l-(3,5-di-0:p-toluoyl-2-deoxy-β-D-ribofiiranosyl)-5-nitroindole-3-carboxylate (Ex 13.2)
To a solution of 5-nitroindole (3 g, 18.5 mmol) in ether (100 cm3) at O0C was added oxalyl chloride (8 cm3, 92 mmol) dropwise, and stirring continued at 0°C for 24 hr. The solid was filtered and dried. Yield 4.1 g, 88%. The acid chloride was suspended in water (100 cm3) and potassium hydroxide (l.lg, 19.6 mmol) added and the solution heated at 9O0C for 1 h. The solution was cooled, acidified and the yellow solid filtered. The solid was resusp ended in hydrogen peroxide solution (30%, 50 cm3) and the solution heated at reflux for 3 hours. After cooling the solid was filtered, dried and recrystallised from aqueous ethanol to give a greenish- yellow solid. Yield 2.45 g, 64%. mp 285-2870C. δH 7.64 (IH, d, J 9, HT), 8.07 (IH, dd, J1 9, J2 2.2, H6), 8.27 (IH, s, H2), 8.88 (IH, d, J2.2, H4), 12.44 (2H, br. s, NH, CO2H).
To a solution of 5-nitroindole-3-carboxylic acid (2.45 g, 12 mmol) in methanol (50 cm3) was added sulphuric acid (1 cm3) and the solution stirred at reflux for 6 hours. The solution was allowed to cool and then poured onto ice-water, neutralised with sodium bicarbonate and the product filtered to give a yellow solid, which was recrystallised from methanol as an off-white solid. Yield 1.76 g, 67%. mp 282-2840C. δH 3.85 (3H, s, OCH3), 7.65 (IH, d, J 9, H7), 8.08 (IH, dd, Ji 9, J2 2.3, H6), 8.35 (IH, s, H2), 8.83 (IH, d, J 2.3, H4), 8.5 (IH, s, NH). uv λmax/nm 320 (15000), 251 (32450), λmin/nm 284, 213; pH 12 λmax/nm 366 (13100), 271 (31500), 213 (48100). m/z 243.1 (M+Na)+. Accurate mass measurement on (M+Na)+ Ci0H8N2O4Na 243.0396, deviation -5.73 ppm.
To a solution of methyl-5-nitroindole-3-carboxylate (1.22 g, 5.5 mmol) in acetonitrile (50 cm3) was added sodium hydride (60%, 0.27 g, 7 mmol) and the solution stirred at room temperature for 30 mins. To this was then added α-3,5-di-O-j9-toluoyl-2-deoxyribofuranosyl chloride (2.6 g, 6.7 mmol) and stirring continued for 2 hours. The solvent was evaporated and the product worked up to give a brown foam, which was chromatographed (CH2Cl2/0-2% MeOH) to give a pale yellow foam. Yield 2.25g, 73%. δH 2.36 (3H, s, toluoyl-CH3), 2.40 (3H, s, toluoyl-CH3), 2.80-2.87 (IH, m, H2'), 2.99-3.08 (IH, m, H2"), 3.82 (3H, s, OCH3), 4.44-4.67 (3 H, m, H4', H5!, H5"), 5.71-5.73 (IH, m, H3'), 6.72 (IH, t, J 6.7, Hl'), 7.26-7.39 (4H, m, toluoyl-CH), 7.78-8.03 (6H, m, 4 x toluoyl-CH, H7, H6), 8.57 (IH, S3 H2), 8.81 (IH, d, J 1.9, H4). uv λmax/nm 316 (9600), 246 (32300), λmin/nm 302, 222; pH 1 λmax/nm 274 (28400), 253 (29800), λmin/nm 268, 225; pH 12 λmax/nm 316 (13700), 229 (34900), λmin/nm 306, 232, 209. m/z 595.1 (M+Na)+ Accurate mass measurement on C31H2SN2O9Na 595.16750, deviation :2.99ppm.
A solution of methyl-l-(3,5-di-O-p-toluoyl-2-deoxy-β-D-ribofuranosyl)-5-nitroindole-3- carboxylate (2.3 g, 4 mmol) in methanol (100 cm3) containing triethylamine (5 cm3) was heated at reflux overnight. The solution was evaporated and the product chromatographed (CH2CVO- 5% MeOH) to give a pale yellow solid, which recrystallised from ethanol to give off-white needles. Yield 1.22 g, 90%. mp 162-164°C. (Found: C, 53.41; H, 4.83; N, 8.27%; C15Hi6N2O7 requires C, 53.57; H, 4.80; N, 8.33%). δH 2.31-2.39 (IH, m, H23), 2.48-2.56 (IH, m, H2"), 3.51-3.63 (2H, m, H5!, H5"), 3.30-3.38 (IH, m, H4'), 3.33 (3H, s, CH3), 4.35-4.40 (IH, m, H3'X 5.04 (IH, t, J 5.1, 5'-OH), 5.36 (IH, d, J4.1, 3'-OH), 6.50 (IH, t, J 6.2, Hl'), 7.96 (IH, d, J 9.2, H7), 8.13 (IH, dd, Ji 9.1, J2 2.3, H6), 8.62 (IH, s, H2), 8.84 (IH, d, J2.2, H4). uv λmax/nm 318 (9100), 266 (24300), λmin/nm 290, 216. m/z 359.1 (M+Na)+ Accurate mass measurement on C15H16N2O7Na 359.08480, deviation -2.09ppm.
l-(2-Deoxy-β~D-ribofuranosyl)-5-nitroindoIe-3-carboxamide (Ex 13, 1) A solution of the above ester (300 mg, 0.89 mmol) in 0.880 ammonia solution (10 cm3) and the solution stirred at 500C overnight. The solution was evaporated and the product crystallised from ethanol to give a pale green solid. Yield 133 mg, 46%. mp 220-2220C. (Found: C, 52.15; H, 4.75; N, 12.87%; C15Hi6N3O7 requires C, 52.34; H, 4.71; N, 13.08%). δH 2.34-2.49 (2H, m, H2', H2"), 3.46-3.59 (2H, m, H5', H5"), 3.85-3.89 (IH, m, H4'), 4.39 (IH, br. s, H3!), 4.89 (IH, t, J 5.3, 5'-OH), 5.38 (IH, d, J 4.2, 3'-OH), 6.47 (IH, t, Hl'), 7.16, 7.70 (2 x br. s, CONH2), 7.86 (IH, d, J9, HT), 8.08 (IH, dd? J1 9, J22, H6), 8.48 (IH, s, H2), 9.06 (IH, d, J2, H4). uv λmax/nm 320 (9700), 267 (24600), λmax/nm 291, 223. ε260 (μM) = 22.7. m/z 344.1 (M+Na)+. Accurate mass measurement on Ci4HiSNsOsNa 344.08470, deviation -3.45ppm. l-(2-Deoxy-β-D-ribofuranosyl)-5-nitroindole-3-methylcarboxamide (Ex 13.3) A solution of the methyl ester (200 mg, 0.59 mmol) in 40% aqueous methylamine solution (10 cm3) and the solution stirred at 50°C overnight. The solution was evaporated and the product crystallised from ethanol to give a yellow solid. Yield 96 mg, 48%. rap 248-2500C. (Found: C, 52.51; H, 5.07; N3 12.03%; Ci5Hi7N3O7.0.5H2O requires C, 52.32; H, 5.26; N, 12.20%). δH 2.33-2.46 (2H, m, H2\ H2"), 2.79 (3H, d, J 4.4, NHCH3), 3.46-3.57 (2H, m, H5', H5"_), 3.85-3.89 (IH, m, H4'), 4.39 (IH, br. s, H3'), 4.91 (IH, br. s, 5'-OH), 5.39 (IH, d, J 3, 3'-OH), 6.47 (IH, t, J 6.5, Hl'), 7.86 (IH, d, J 9, H7), 8.08 (IH, dd, J1 9.1, J2 2.2, H6), 8.19 (IH, br, NH), 8.41 (IH, s, H2), 9.06 (IH, d, J2, H4). uv λmax/nm, λmax/nm 321 (8300), 267 (20700), 203 (25800), λmin/nm 291, 222. ε26o QM) = 19.2. m/z 358.1 (M+Na)+. Accurate mass measurement on C15Hi7NsOsNa 358.10120, deviation -0.94ppm.
Ex 13.4 was prepared by the action of hydrazine on Ex 13.2.
Ex 13.5 was prepared by the action of methyl hydrazine on Ex 13.2.
Ex 13.6 was prepared from the corresponding bromoindole by the action of hydroxylamine using Pd catalysts.

Claims

Claims
1. Use of a compound having a structure according to general formula 1 defined below, in the manufacture of a medicament to treat and/or prevent a parasitic infection or infestation in a mammalian subject
Figure imgf000049_0001
Formula I
wherein X1 = N or CH or C=O (X2 = NH) or C=S (X2 = NH) or C-OR1 or C-halogen or C- azide;
X2 = N or CRi or C-halogen or CS(O)nRi where n = 0-2 or a (C)m linker where m = 1-3 between X2 and Xg or C-X5X6 (in which case X5X6 at C6 (purine numbering) is replaced by
H or NHR1 or O or ORi or S or SRi);
X3 = N or CH or C-NO2;
X4 = N or CH or C-NO2 or C-NRiR2 or an amidine derivative or a guanidinium derivative;
Figure imgf000049_0002
X6 = OR1 or O-acyl or 0-S(O)nRi or NRiR2 or NH-acyl or or N(Acyl)2 or NH-OS(O)2Ri or
NH-S(O)nR1 where n = 0-2 or a hydrazone derivative or an oxime derivative, but if X5 = O
Xe cannot = O or X5X6 is an amidine or an TV-substituted pyridine or substituted guanidine;
Y = H or NH2 or NRiR2 or =0 (X3 = NH) or ORi or F or Cl or Br or I or CRiR2R3 or
S(O)nRi where n = 0-2 or azide or X5X6 (in which case X5X6 at C6 (purine numbering) is replaced by H or NHRi or O or ORi or S or SRi);
Ri, R2, R3 are independently selected from the group consisting of H or (optionally substituted), alkyl, alkenyl or alkynyl or aryl or aralkyl where the substituents may be selected from H, OH, NH2, halogen, N3, CN, CHO, COOR', C0NR'2, OR, NR'2, SR',
NR'NR'2, NR' OR', NO2 and R' is alkyl, alkenyl, alkynyl, aralkyl, acyl, sulfonyl; Z = H or (optionally substituted) alkyl or alkenyl or alkynyl or aralkyl or a β-D-linked sugar derivative of general formula II in. the β-configuration
Figure imgf000050_0001
Formula JQ where:
B is the nucleobase from Formula I;
X7 = CH2 or O or NR1 or S;
R4 = H or OH or OR1 or halogen or azide or a phosphate derivative;
R5 = H or F or CH3;
Re = H or OH or ORi or halogen or azide or a phosphate derivative; and
R7 = H or halogen or R1 or a derivative of an amino acid or PO3H2 or P2OeH3 or P3O9HU or a methylene derivative of P2O6H3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2).
2. A use according to claim 1, wherein the active agent has a structure according to Formula IA below
Figure imgf000050_0002
Formula IA where: Xu = CH or N
X2.1 = CH or N or S or S-Me or C-halogen or CRi;
Figure imgf000051_0001
X6.i = ORi or O-acyl or 0-S(O)nRi where n = 0-2 or NRiR2 or NH-acyl or N(Acyl)2 NH-
OS(O)2Ri or NH-S(O)nRi where n = 0-2 or X5.1X5.1 is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative or a iV-pyridinium derivative but X5.1 and X6.1 cannot both be O;
Yi = H or NH2 or =0 (N3 (purine numbering)= NH) or halogen or azide;
Zi = H or Formula DA in the β-configuration
Re.1 'R4.1
Formula IIA
where:
B is the nucleobase from Formula IA;
R5.i is H or F or CH3;
R4.! and R5.1 are independently selected from H or OH or F;
R7.1 = H or PO3H2 or P2O6H3 or P3O9H4 or a methylene derivative OfP2O6H3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CHa).
3. A use according to claim 2, wherein the active agent has a structure according to formula IA, wherein
B is the nucleobase from Formula IA;
R5.! is H or F or CH3;
R4.1 and R5.1 are independently selected from H or OH or F;
R7.1 = H or PO3H2 or P2OgH3 or P3O9H4 or a methylene derivative Of P2O6H3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2).
4. A use according to claim 1, wherein the active agent has a structure according to Formula IB below:
Figure imgf000052_0001
Formula IB where:
X^ is N or CH;
Figure imgf000052_0002
X6.2 is OR1 or O-acyl or 0-S(O)nRi where n = 0-2 or NRiR2 or NH-acyl or NH-OS(O)2Ri or
NH-S(O)nRi where n = 0-2 or X5.2Xg.2 is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative but X5.1 and X6.i cannot both be O;
Y1.2 = H or NH2 or =0 (N3 = NH) or halogen or azide;
R1-2 is O or OR1 or S or SRi or NRiR2 or halogen;
Zi,2 - H or Formula DA in the β -configuration where B is the nucleobase from Formula IB;
R5.i is H or F or CH3;
R4.1 and R5.1 are independently selected from H or OH. or F; and
R7.1 = H or PO3H2 or P2OgH3 or P3O9H4 or a methylene derivative OfP2OeH3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2);
5. A use according to claim 4, wherein the active agent has a structure according to formula
IB wherein:
XL2 is N or CH;
Figure imgf000052_0003
X6.2 is ORi or O-acyl or 0-S(O)nRi where n = 0-2 or NRxR2 or NH-acyl OrNH-OS(O)2Ri or
NH-S(O)nRi where n = 0-2 or X5.2X6.2 is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative but X5.1 and Xg.1 cannot both be O;
Y1.2 = H or NH2 or =0 (N3 = NH) or halogen or azide; RL2 is O or OR1 or S or SRi or NR1R2 or halogen;
Z1.2 - H or Formula DA in the β-configuration where B is the nucleobase from Formula IB;
R5.! is H or F or CH3;
R4. i and Rs. i are independently selected from H or OH or F; and
R7.i = H or PO3H2 or P2O6H3 or P3O9H4 or a methylene derivative OfP2O6H3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-O replaced with CH2);
6. A use according to claim 1, wherein the active agent has a structure according to Formula IC below:
Figure imgf000053_0001
Formula IC where:
XL3 is CH or N;
X2.3 is CH orN;
Figure imgf000053_0002
X63 is ORi or O-acyl or 0-S(O)nR1 where n = 0-2 or NRxR2 or NH-acyl OrNH-OS(O)2Ri or
NH-S(0)aRi where n = 0-2 or X5.3X6.3 is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative but X5.1 and X6.i cannot both be O;
R1.3 is O or ORi or S or SRi or NRiR2 or halogen;
Zu = H or Formula IEB in the β-configuration where B is the nucleobase from Formula IC;
R5.i is H orF or CH3;
R4.1 and R5.1 are independently selected from H or OH or F;
R7.1 = H or PO3H2 or P2OgH3 or P3O9H4 or a methylene derivative OfP2OgH3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2);
7. A use according to claim 6, wherein the active agent has a structure according to formula IC wherein
Xu is CH or N;
X2-3 is CH or N;
Figure imgf000054_0001
X6.3 is ORi or O-acyl or 0-S(O)nR1 where n = 0-2 or NRiR2 or NH-acyl or NH-OS(O)2R1 or
NH-S(O)nRi where n = 0-2 or X5.3X6.3 is a hydrazone derivative or an oxime derivative or an amidine derivative or a guanidinium derivative but X5.1 and Xo cannot both be O;
R1.3 is O or ORi or S or SRi or NRjR2 or halogen;
Z1.3 = H or Formula IIB in the β-configuration where B is the nucleobase from Formula IC;
R5.i is H orF or CH3;
R4.! and R5.1 are independently selected from H or OH or F;
R7.! = H or PO3H2 or P2O6H3 or P3O9H4 or a methylene derivative of P2OgHs or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2);
8. A use according to claim 1, wherein the active agent has a structure according to Formula ID below:
Figure imgf000054_0002
Formula ED
where: Xu is CH orN; X2.5 is CH orN;
Ru is O or ORi or S or SRi or NRiR2 or halogen;
Yi.,5 is H or NH2 or =0 (N3 (purine numbering) = NH) or halogen or azide or X5X6;
Ru is H or OH orF;
Figure imgf000055_0001
R7.5 is acyl or alkyl or an amino acid such as homocysteine or a derivative of an amino acid such as butanoic acid.
9. A use according to claim 8, wherein the active agent has a structure according to general formula ID, wherein
Xu is CH or N;
X2.5 is CH or N;
R1.5 is O or ORi or S or SRi or NRiR2 or halogen;
Yi,5 is H or NH2 or =0 (N3 (purine numbering) = NH) or halogen or azide or XsXe,'
R4J is H or OH or F;
Figure imgf000055_0002
R7.5 is acyl or alkyl or an amino acid such as homocysteine or a derivative of an amino acid such as butanoic acid.
10. A use according to claim I, wherein the active agent has a structure according to Formula IE below:
Figure imgf000055_0003
Formula IE where:
Figure imgf000055_0004
X2.6 is CH or N or CR8; X4.6 is CH or C-NO2 or C-NRiR2 or an amidine derivative or a guanidinium derivative;
X5.6 is H or NH2 or O or ORi or S or SRi;
R8, if present, is CONHRi or CONRiNHR2 or CONRiOR2;
Y6 is H or NH2 or NHRi or N3 or halogen or O or ORi or S or SRi or CR1R2R3
Z1.6 is H or Ri or Formula HA in the β-configuration, where B is the nucleobase IE;
R5.i is H or F or CH3;
R4.! and R5.1 are independently selected from. H or OH or F; and
R7.1 = H or PO3H2 or P2O6H3 or P3OgH4 or a methylene derivative OfP2OgH3 or P3OsH4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2).
11. A use according to claim 10, wherein the active agent has a structure according to general formula IE, wherein
Figure imgf000056_0001
X2.6 is CH or N or CR8;
X4.6 is CH or C-NO2 or C-NRiR2 or an amidine derivative or a guanidinium derivative;
X5.6 is H or NH2 or O or ORi or S or SRi;
Rs, if present, is CONHRi or CONRiNHR2 or CONRiOR2;
Y6 is H or NH2 or NHRi or N3 or halogen or O or ORi or S or SRi or CRiR2R3
Zi. β is H or Ri or Formula HA in the β-configuration, where B is the nucleobase IE;
Figure imgf000056_0002
R4.1 and R5.1 are independently selected from H or OH or F; and
R7.1 = H or PO3H2 or P2O6H3 or P3O9H4 or a methylene derivative Of P2O6H3 or P3O9H4 or a masked phosphate or a phosphonate derivative (5'-0 replaced with CH2).
12. A use according to any one of the preceding claims wherein Y, Yi, Y1.2, Y1.5 or Y6, as appropriate, is H or NH2.
13. A use according to any one of the preceding claims, wherein X1, Xn, Xi,2, X1.3, Xi.5 or Xi .6, as appropriate, is CH.
14. A use according to any one of the preceding claims, wherein X2, X2.i, X2.3, X2.5 or X2.6, as appropriate, is N,
15. A use according to any one of the preceding claims, wherein X5X6, Xs.iX&i, or X5.2X6.2, if present, is selected from the group consisting of-NH-NH2, -NH-OH and -N(alkyl)-NH2.
16. A use according to claim 1, wherein Y is H or NH2, X1 is CH, X2 is N, and X5X6 is selected from the group consisting of -NH-NH2, -NH-OH and -N(alkyl)-NH2.
17. A purine nucleobase, nucleoside or nucleotide analogue according to general formula IB as set forth in claim 4.
18. A purine nucleoside, nucleoside or nucleotide analogue according to general formula IC as set forth in claim 6.
19. A purine nucleobase, nucleoside or nucleotide analogue according to general formula IE as set forth in claim 10.
20. A pharmaceutical composition comprising a therapeutically or prophylactically effective amount of an active agent as defined in any one of the preceding claims, or a pharmaceutically acceptable ester or salt thereof, admixed with at least one pharmaceutically acceptable carrier, diluent or excipient.
21. A pharmaceutical composition according to claim 20, comprising a plurality of different active agents, each active agent being as defined in accordance with any one of claims 1-19.
22. Use of a compound according to any one of claims 17, 18 or 19, in the manufacture of a pharmaceutical composition.
23. A pharmaceutical composition comprising one or more compounds in accordance with any one of claims 17, 18 or 19, or a pharmaceutically acceptable ester or salt thereof, in admixture with a pharmaceutically acceptable carrier, diluent or excipient.
24. A pharmaceutical composition according to any one of claims 20, 21 or 23 further comprising one or more conventional anti-protozoal agents.
25. A pharmaceutical composition according to claim 24, wherein the conventional antiprotozoal agent is selected from chloroquine, pyrimethamine, cycloguanil, doxycycline, mefloquine, primaquin, diminazene, isometamidium, or artemisinin or derivatives thereof.
26. A method of treating or preventing a protozoal infection or infestation in a mammalian subject, the method comprising administering to the subject a therapeutically or prophylactically effective dose of a pharmaceutical composition according to any one of claims 20-21 or 23-25.
27. A use according to any one of claims 1-19, or a method according to claim 26, wherein the subject is a human.
28. A use according to any one of claims 1-19, or a method according to claim 26, wherein the infection or infestation is caused by Plasmodium spp., Trypanosomes or Leishmania spp.
29. A use according to any one of claims 1-19, or a method according to claim 26, wherein the infection is malaria caused by a chloroquine resistant strain of Plasmodium spp.
30. A compound, according to the definition in any one of claims 1-16, for use in the prevention and/or treatment of a protozoal infection or infestation in a mammalian subject.
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