WO2007097088A1 - Gene encoding protein with vicinal diketone or diacetyl-reducing activity and use thereof - Google Patents

Gene encoding protein with vicinal diketone or diacetyl-reducing activity and use thereof Download PDF

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Publication number
WO2007097088A1
WO2007097088A1 PCT/JP2006/323865 JP2006323865W WO2007097088A1 WO 2007097088 A1 WO2007097088 A1 WO 2007097088A1 JP 2006323865 W JP2006323865 W JP 2006323865W WO 2007097088 A1 WO2007097088 A1 WO 2007097088A1
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Prior art keywords
yeast
polynucleotide
seq
protein
diacetyl
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PCT/JP2006/323865
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French (fr)
Inventor
Yoshihiro Nakao
Yukiko Kodama
Tomoko Shimonaga
Fumihiko Omura
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Suntory Limited
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Priority to DK06833668.4T priority Critical patent/DK1871790T3/en
Priority to CA002604276A priority patent/CA2604276A1/en
Priority to EP06833668A priority patent/EP1871790B1/en
Priority to JP2007541528A priority patent/JP4460007B2/en
Priority to US11/918,494 priority patent/US20090041889A1/en
Priority to AU2006338867A priority patent/AU2006338867B2/en
Publication of WO2007097088A1 publication Critical patent/WO2007097088A1/en

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12C—BEER; PREPARATION OF BEER BY FERMENTATION; PREPARATION OF MALT FOR MAKING BEER; PREPARATION OF HOPS FOR MAKING BEER
    • C12C12/00—Processes specially adapted for making special kinds of beer
    • C12C12/002—Processes specially adapted for making special kinds of beer using special microorganisms
    • C12C12/004—Genetically modified microorganisms
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/37—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi
    • C07K14/39—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi from yeasts
    • C07K14/395—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from fungi from yeasts from Saccharomyces
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12C—BEER; PREPARATION OF BEER BY FERMENTATION; PREPARATION OF MALT FOR MAKING BEER; PREPARATION OF HOPS FOR MAKING BEER
    • C12C12/00—Processes specially adapted for making special kinds of beer
    • C12C12/002—Processes specially adapted for making special kinds of beer using special microorganisms
    • C12C12/006—Yeasts
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12G—WINE; PREPARATION THEREOF; ALCOHOLIC BEVERAGES; PREPARATION OF ALCOHOLIC BEVERAGES NOT PROVIDED FOR IN SUBCLASSES C12C OR C12H
    • C12G1/00—Preparation of wine or sparkling wine
    • C12G1/02—Preparation of must from grapes; Must treatment and fermentation
    • C12G1/0203—Preparation of must from grapes; Must treatment and fermentation by microbiological or enzymatic treatment
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004—Oxidoreductases (1.)

Definitions

  • the present invention relates to a gene encoding a protein having a vicinal diketone or diacetyl-reducing activity and use thereof, in particular, a brewery yeast for producing alcoholic beverages with superior flavor, alcoholic beverages produced with said yeast, and a method for producing said beverages.
  • the present invention relates to a yeast, whose capability of producing vicinal diketone(s), especially diacetyl, that are responsible for off-flavors in products, is reduced by amplifying expression level of MMFl gene encoding a protein (Mmflp) having a vicinal diketone or diacetyl-reducing activity, especially non-ScMMFl gene or ScMMFl gene specific to a lager brewing yeast and to a method for producing alcoholic beverages with said yeast.
  • MMFlp protein having a vicinal diketone or diacetyl-reducing activity
  • Flavor of Diacetyl is a representative off-flavor in brewed alcoholic beverages such as beer, sake and wine and so on among flavoring substances of alcoholic beverages.
  • DA flavor which is also referred to as “butter flavor” or “sweaty flavor” in beer, “tsuwari-ka”, which means a nauseating flavor, in sake, occurs when vicinal diketone(s), hereinafter also referred to as "VDK”, mainly DA, are present above certain threshold levels in products.
  • the threshold level is said to be 0.1 ppm (parts per million) in beer (Journal of the Institute of Brewing. 76, 486 (1979)).
  • VDK in alcoholic beverages can be broadly divided into DA and 2,3-pentanedione, herein after referred to as "PD".
  • DA and PD are formed by non-enzymatic reactions, which yeasts are not involved in, of ⁇ -acetolactic-acid and ⁇ -acetohydroxybutyric-acid as precursors which are intermediate in biosynthesis of valine and isoleucine, respectively.
  • VDKs i.e., DA and PD
  • ⁇ -acetohydroxy-acids i.e., ⁇ -acetolactic-acid and ⁇ -acetohydroxybutyric-acid
  • DA and PD DA and PD
  • ⁇ -acetohydroxy-acids i.e., ⁇ -acetolactic-acid and ⁇ -acetohydroxybutyric-acid
  • Japanese Patent Application Laid-Open NO. 2002-291465 discloses a method obtaining variant strains sensitive to analogues of the branched amino acids described above, and selecting DA low accumulating strains from the variant strains.
  • ⁇ -acetolactate decarboxylase is an enzyme prepared only by utilizing recombinant DNA technology, and thus use of the enzyme is not acceptable due to consumers' negative images in Japan. Genetically engineered yeasts using DNA strands encoding ⁇ -acetolactate decarboxylase are reported in both Japanese Patent Application Laid-Open Nos. H2-2654S8 and H07-171.
  • VDK-producing ability utilizing a gene encoding a protein capable of reducing the smell of VDKs
  • vicinal diketones especially DA (diacetyl)
  • DA diacetyl
  • the present inventors made extensive studies. and as a result succeeded in identifying and isolating a gene encoding a protein having a vicinal diketone or diacetyl-reducing activity. Moreover, a yeast in which the obtained gene was transformed and expressed was produced to confirm reduction of the VDK concentration, especially DA concentration, thereby completing the present invention.
  • the present invention relates to a gene encoding a protein having a vicinal diketone or diacetyl-reducing activity (activity of reducing a vicinal diketone(s) or diacetyl) existing specifically in a lager brewing yeast to a protein encoded by said gene, to a transformed yeast in which the expression of said gene is controlled, to a method for controlling the level of VDKs, especially the level of DA. in a product by using a yeast in which the expression of said gene is controlled. More specifically, the present invention provides the following polynucleotides, a vector comprising said polynucleotide, a transformed yeast introduced with said vector, a method for producing alcoholic beverages by using said transformed yeast, and the like.
  • a polynucleotide comprising a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO:2 with one or more amino acids thereof being deleted, substituted, inserted and/or added, and having a vicinal diketone or diacetyl-reducing activity;
  • a polynucleotide comprising a polynucleotide encoding a protein having an amino acid sequence having 60% or higher identity with the amino acid sequence of SEQ ID NO:2, and having a vicinal diketone or diacetyl-reducing activity;
  • a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO:1 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity;
  • a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of the polynucleotide encoding the protein of the amino acid sequence of SEQ ID NO:2 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
  • a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO: 2. or encoding an amino acid sequence of SEQ ED NO: 2 wherein 1 to 10 amino acids thereof is deleted, substituted, inserted, and/or added, and wherein said protein has a vicinal diketone or diacetyl-reducing activity;
  • a polynucleotide encoding a protein having 90% or higher identity with the amino acid sequence of SEQ ID NO: 2, and having a vicinal diketone or diacetyl-reducing activity; and (i) a polynucleotide which hybridizes to SEQ ID NO: 1 or which hybridizes to a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
  • a vector comprising the polynucleotide selected from the group consisting of:
  • a polynucleotide which hybridizes to SEQ K) NO: 3 or which hybridizes to a nucleotide sequence complementary to the nucleotide sequence of SEQ K) NO: 3 under high stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
  • a yeast wherein the vector of (7) or (8) above is introduced.
  • a method for assessing a test yeast for its total vicinal diketone or total diacetyl-producing capability comprising using a primer or a probe designed based on a nucleotide sequence of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ DD NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability.
  • (16a) A method for selecting a yeast having a low total vicinal diketone or total diacetyl-producing capability by using the method described in (16) above.
  • (16b) A method -for producing an alcoholic beverage (for example, beer) by using the yeast selected with the method in (16a) above.
  • (17) A method for assessing a test yeast for its total vicinal diketone or total diacetyl-producing capability, comprising: culturing a test yeast; and measuring an expression level of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability.
  • (17a) A method for selecting a yeast having a low total vicinal diketone or total diacetyl-producing capability, which comprises assessing a test yeast by the method described in (17) above and selecting a yeast having a high expression level of ene encoding a protein having a vicinal diketone or diacetyl-reducing activity.
  • (17b) A method for producing an alcoholic beverage (for example, beer) by using the yeast selected with the method in (17a) above.
  • (18) A method for selecting a yeast, comprising: culturing test yeasts; quantifying the protein according to (6) or measuring an expression level of a gene having the nucleotide sequence of SEQ ED NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability; and selecting a test yeast having said protein amount or said gene expression level according to a target total vicinal diketone or total diacetyl-producing capability.
  • a method for selecting a yeast comprising: culturing test yeasts; measuring a total vicinal diketone or total diacetyl-producing capability; and selecting a test yeast having a target total vicinal diketone or total diacetyl-producing capability.
  • the method for selecting a yeast according to (18) above comprising: culturing a reference yeast and test yeasts; quantifying the protein according to (6) above in each yeast; and selecting a test yeast having said protein for a larger amount than that in the reference yeast.
  • a method for producing an alcoholic beverage comprising: conducting fermentation for producing an alcoholic beverage using the yeast according to any one of (9) to (11) above or a yeast selected by the method according to any one of (18) to (20) above; and adjusting the total vicinal diketone or total diacetyl-producing capability.
  • Figure 1 shows the cell growth with time upon beer fermentation test.
  • the horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660).
  • Figure 2 shows the extract consumption with time upon beer fermentation test.
  • the horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%).
  • Figure 3 shows the expression behavior of non-ScMMFl gene in yeasts upon beer fermentation test.
  • the horizontal axis represents fermentation time while the vertical axis represents the brightness of detected signal.
  • Figure 4 shows the cell growth with time upon beer fermentation test using the non-ScMMFl -highly expressed strain.
  • the horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660).
  • Figure 5 shows the extract consumption with time upon beer fermentation test using the non-ScMMFl -highly expressed strain.
  • the horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%).
  • Figure 6 shows the VDK concentration in the fermentation broth (at the completion of fermentation) during beer fermentation test using the non-ScMMFl -highly expressed strain.
  • Figure 7 shows the cell growth with time upon beer fermentation test.
  • the horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660).
  • Figure 8 shows the extract consumption with time upon beer fermentation test.
  • the horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%).
  • Figure 9 shows the expression behavior of ScMMFl gene in yeasts upon beer fermentation test.
  • the horizontal axis represents fermentation time while the vertical axis represents the brightness of detected signal.
  • Figure 10 shows the cell growth with time upon beer fermentation test using the ScMN CFl -highly expressed strain.
  • the horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660).
  • Figure 11 shows the extract consumption with time upon beer fermentation test using the
  • ScMMF 1 -highly expressed strain The horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%).
  • Figure 12 shows the VDK concentration in the fermentation broth (at the completion of fermentation) during beer fermentation test using the ScMMFl -highly expressed strain.
  • the present inventors isolated and identified non-ScMMFl gene and ScMMFl gene encoding a protein having a vicinal diketone or diacetyl-reducing activity unique to lager brewing yeast based on the lager brewing yeast genome information mapped according to the method disclosed in Japanese Patent Application Laid-Open No. 2004-283169.
  • These nucleotide sequences of the genes are represented by SEQ ID NO: 1 and SEQ ID NO: 3, respectively.
  • each of an amino acid sequence of a protein encoded by each of these genes is represented by SEQ ID NO: 2 or SEQ ID NO: 4, respectively.
  • the present invention provides (a) a polynucleotide comprising a polynucleotide of the nucleotide sequence of SEQ ID NO:1 or SEQ ID NO: 3; and (b) a polynucleotide comprising a polynucleotide encoding a protein of the amino acid sequence of SEQ ID NO:2 or SEQ ID NO: 4.
  • the polynucleotide can be DNA or RNA.
  • the target polynucleotide of the present invention is not limited to the polynucleotide encoding a protein having a vicinal diketone or diacetyl-reducing activity derived from lager brewing yeast and may include other polynucleotides encoding proteins having equivalent functions to said protein.
  • Proteins with equivalent functions include, for example, (c) a protein of an amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 with one or more amino acids thereof being deleted, substituted, inserted and/or added and having a vicinal diketone or diacetyl-reducing activity.
  • Such proteins include a protein consisting of an amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 with, for example, 1 to 100, 1 to 90, 1 to 80, 1 to 70, 1 to 60, 1 to 50, 1 to 40, 1 to 39, 1 to 38, 1 to 37, 1 to 36, 1 to 35, 1 to 34, 1 to 33, 1 to 32, 1 to 31, 1 to 30, 1 to 29, 1 to 28, 1 to 27, 1 to 26, 1 to 25, 1 to 24, 1 to 23, 1 to 22, 1 to 21, 1 to 20, 1 to 19, 1 to 18, 1 to 17, 1 to 16, 1 to 15, 1 to 14, 1 to 13, 1 to 12, 1 to 11, 1 to 10, 1 to 9, 1 to 8, 1 to 7, 1 to 6 (1 to several amino acids), 1 to 5, 1 to 4, 1 to 3, 1 to 2, or 1 amino acid residues thereof being deleted, substituted, inserted and/or added and having a vicinal diketone or diacetyl-reducing activity.
  • such proteins include (d) a protein having an amino acid sequence with about 60% or higher, about 70% or higher, 71%.or higher, 72% or higher, 73% or higher, 74% or higher, 75% or higher, 76% or higher, 77% or higher, 78% or higher. 79% or higher, 80% or higher, 81% or higher, 82% or higher, 83% or higher, 84% or higher, 85% or higher, 86% or higher, 87% or higher, 88% or higher, 89% or higher, 90% or higher, 91% or higher, 92% or higher, 93% or higher.
  • the vicinal diketone or diacetyl-reducing activity can be assessed, for example by, a method of Drews, et al. (Drews et al., Mon. fur Brau., 34, 1966) wherein total VDK (DA and PD) concentration is measured in fermentation broth and compared.
  • the present invention also contemplates (e) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3 under stringent conditions and which encodes a protein having a vicinal diketone or diacetyl-reducing activity; and (f) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide complementary to a nucleotide sequence of encoding a protein of SEQ ID NO: 2 or SEQ ID NO: 4 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
  • a polynucleotide that hybridizes under stringent conditions refers to nucleotide sequence, such as a DNA, obtained by a colony hybridization technique, a plaque hybridization technique, a southern hybridization technique or the like using all or part of polynucleotide of a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3 or polynucleotide encoding the amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 as a probe.
  • the hybridization method may be a method described, for example, in Molecular Cloning 3rd Ed., Current Protocols in Molecular Biology, John Wiley & Sons 1987-1997.
  • stringent conditions may be any of low stringency conditions, moderate stringency conditions or high stringency conditions.
  • Low stringency conditions are, for example, 5 x SSC, 5 x Denhardt's solution, 0.5% SDS, 50% formamide at 32°C.
  • Mode stringency conditions are, for example, 5 x SSC, 5 x Denhardt's solution, 0.5% SDS, 50% formamide at 42 0 C.
  • High stringency conditions are, for example, 5 x SSC, 5 x Denhardt's solution, 0.5% SDS, 50% formamide at 5O 0 C.
  • a polynucleotide such as a DNA
  • a polynucleotide with higher homology is expected to' be obtained efficiently at higher temperature, although multiple factors are involved in hybridization stringency including temperature, probe concentration, probe length, ionic strength, time, salt concentration and others, and one skilled in the art may appropriately select these factors to realize similar stringency.
  • a commercially available kit is used for hybridization, for example, Alkphos
  • Direct Labeling Reagents may be used.
  • the membrane is washed with a primary wash buffer containing 0.1% (w/v) SDS at 55°C, thereby detecting hybridized polynucleotide, such as DNA.
  • Other polynucleotides that can be hybridized include polynucleotides having about 60% or higher, about 70% or higher.
  • Protein of the present invention also provides proteins encoded by any of the polynucleotides (a) to
  • a preferred protein of the present invention comprises an amino acid sequence of SEQ ID NO:2 or SEQ DD NO: 4 with one or several amino acids thereof being deleted, substituted, inserted and/or added, and has a vicinal diketone or diacetyl-reducing activity.
  • Such protein includes those having an amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 with amino acid residues thereof of the number mentioned above being deleted, substituted, inserted and/or added and having a vicinal diketone or diacetyl-reducing activity.
  • such protein includes those having homology of about 60% or more, preferably about 70% or more, more preferably about 80% or more, further more preferably about 90% or more, or the most preferably about 95% or more as described above with the amino acid sequence of SEQ ED NO: 2 or SEQ ID NO: 4 and having a vicinal diketone or diacetyl-reducing activity.
  • Such proteins may be obtained by employing site-directed mutation described, for example, in Molecular Cloning 3rd Ed., Current Protocols in Molecular Biology, Nuc. Acids. Res., 10: 6487 (1982), Proc. Natl. Acad. Sci. USA 79: 6409 (1982), Gene 34: 315 (1985), Nuc. Acids. Res. r 13: 4431 (1985), Proc. Natl. Acad. Sci. USA 82: 488 (1985).
  • Deletion, substitution, insertion and/or addition of one or more amino acid residues in an amino acid sequence of the protein of the invention means that one or more amino acid residues are deleted, substituted, inserted and/or added at any one or more positions in the same amino acid sequence. Two or more types of deletion, substitution, insertion and/or addition may occur concurrently.
  • examples of mutually substitutable amino acid residues are enumerated,
  • Amino acid residues in the same group are mutually substitutable.
  • the groups are provided below.
  • Group A leucine, isoleucine, noiieucine, valine, norvaline, alanine, 2-aminobutanoic acid, methionine, o-niethylserine, t-butylglycine, t-butylalanine, cyclohexylalanine;
  • Group B asparatic acid, glutamic acid, isoasparatic acid, isoglutamic acid, 2-aminoadipic acid, 2-aminosuberic acid;
  • Group C asparagine, glutamine;
  • Group D lysine, arginine, ornithine, 2,4-diaminobutanoic acid, 2,3-diaminopropionic acid;
  • Group E proline .
  • the protein of the present invention may also be produced by chemical synthesis methods such as Fmoc method (fluorenylmethyloxycarbonyl method) and tBoc method (t-butyloxycarbonyl method).
  • Fmoc method fluorenylmethyloxycarbonyl method
  • tBoc method t-butyloxycarbonyl method
  • peptide synthesizers available from, for example, Advanced ChemTech, PerkinElmer, Pharmacia, Protein Technology Instrument, Synthecell-Vega, PerSeptive, Shimazu Corp. can also be used for chemical synthesis.
  • the present invention then provides a vector comprising the polynucleotide described above.
  • the vector of the present invention is directed to a vector including any of the polynucleotides (such as DNA) described in (a) to (1) above.
  • the vector of the present invention comprises an expression cassette including as components (x) a promoter that can transcribe in a yeast cell; (y) a polynucleotide (such as DNA) described in any of (a) to (1) above that is linked to the promoter in sense or antisense direction; and (z) a signal that functions in the yeast with respect to transcription termination and polyadenylation of RNA molecule.
  • a vector introduced in the yeast may be any of a multicopy type (YEp type), a single copy type (YCp type), or a chromosome integration type (YIp type).
  • YEp type J. R. Broach et al., Experimental Manipulation of Gene Expression, Academic Press, New York, 83, 1983
  • YCpSO M. D. Rose et al., Gene 60: 237, 1987
  • YIp5 K. Struhl et al., Proc. Natl. Acad. Sci. USA, 76: 1035, 1979
  • YIp type vector all of which are readily available.
  • Promoters/terminators for adjusting gene expression in yeast may be in any combination as long as they function in the brewery yeast and they have no influence on the concentration of constituents such as amino acid and extract in fermentation broth.
  • a promoter of glyceraldehydes 3-phosphate dehydrogenase gene (TDH3), or a promoter of 3-phosphoglycerate kinase gene (PGKl) may be used.
  • TDH3 glyceraldehydes 3-phosphate dehydrogenase gene
  • PGKl 3-phosphoglycerate kinase gene
  • auxotrophy marker cannot be used as a selective marker upon transformation for a brewery yeast for example, a geneticin-resistant gene (G418r), a copper-resistant gene (CUPl) (Marin et al., Proc. Natl. Acad. Sci. USA, 81, 337 1984) or a cerulenin-resistant gene (fas2m, PDR4) (Junji Inokoshi et al.. Biochemistry, 64, 660, 1992; and Hussain et al.. Gene, 101: 149, 1991 , respectively) may be used.
  • a vector constructed as described above is introduced into a host yeast. Examples of the host yeast include any yeast that can be used for brewing, for example, brewery yeasts for beer, wine and sake.
  • yeasts such as genus Sacchai'omyces may be used.
  • a lager brewing yeast for example, Saccharomyces pastori ⁇ ms W34/70, Saccharomyces carlsbergensis NCYC453 or NCYC456, or Saccharoi ⁇ ces cerevisiae NBRC 1951, NBRC1952, NBRCl 953 or NBRC1954 may be used.
  • wine yeasts such as wine yeasts #1, 3 and 4 from the Brewing Society of Japan, and sake yeasts such as sake yeast #7 and 9 from the Brewing Society of Japan may also be used but not limited thereto.
  • lager brewing yeasts such as Saccharomyces pastorianus may be used preferably.
  • a yeast transformation method may be a generally used known method.
  • methods that can be used include but not limited to an electroporation method (Meth. Enzym., 194: 182 (1990)), a spheroplast method (Proc. Natl. Acad. Sci. USA, 75: 1929(1978)). a lithium acetate method (J. Bacteriology. 153: 163 (1983)), and methods described in Proc. Natl. Acad. Sci. USA . . 75: 1929 (1978), Methods in Yeast Genetics, 2000 Edition: A Cold Spring Harbor Laboratory Course Manual.
  • a host yeast is cultured in a standard yeast nutrition medium (e.g., YEPD medium (Genetic Engineering. Vol. 1, Plenum Press, New York, 117(1979)), etc.) such that OD600 nm will be 1 to 6.
  • a standard yeast nutrition medium e.g., YEPD medium (Genetic Engineering. Vol. 1, Plenum Press, New York, 117(1979)), etc.
  • This culture yeast is collected by centrifugation, washed and pre-treated with alkali ion metal ion, preferably lithium ion at a concentration of about 1 to 2 M. After the cell is left to stand at about 3O 0 C for about 60 minutes, it is left to stand with DNA to be introduced (about 1 to 20 ⁇ g) at about 3O 0 C for about another 60 minutes.
  • Polyethyleneglycol preferably about 4.000 Dalton of polyethyleneglycol, is added to a final concentration of about 20% to 50%. After leaving at about 3O 0 C for about 30 minutes, the cell is heated at about 42°C for about 5 minutes. Preferably, this cell suspension is washed with a standard yeast nutrition medium, added to a predetermined amount of fresh standard yeast nutrition medium and left to stand at about 3O 0 C for about 60 minutes. Thereafter, it is seeded to a standard agar medium containing an antibiotic or the like as a selective marker to obtain a transformant.
  • the vector of the present invention described above is introduced into a yeast suitable for brewing a target alcoholic product.
  • This yeast can be used to reduce the level of VDKs, especially DA, of desired alcoholic beverages, and produce alcoholic beverages having enhanced flavor.
  • yeasts to be selected by the yeast assessment method of the present invention can also be used.
  • the target alcoholic beverages include, for example, but not limited to beer, sparkling liquor (happoushii) such as a beer-taste beverage, wine, whisky, sake and the like.
  • alcoholic beverages with enhanced flavor can be produced using the existing facility without increasing the cost.
  • the present invention relates to a method for assessing a test yeast for its capability of producing total vicinal diketones or capability of producing total diacetyl by using a primer or a probe designed based on a nucleotide sequence of a gene having the nucleotide sequence of SEQ ID NO:1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing activity.
  • General techniques for such assessment method is known and is described in, for example, WO01/040514, Japanese Laid-Open Patent Application No. 8-205900 or the like. This assessment method is described in below.
  • genome of a test yeast is prepared.
  • any known method such as Hereford method or potassium acetate method may be used (e.g.. Methods in Yeast Genetics, Cold Spring Harbor Laboratory Press, 130 (1990)).
  • a primer or a probe designed based on a nucleotide sequence (preferably, ORF sequence) of the gene encoding a protein having a vicinal diketone or diacetyl-reducing activity e.g.. Methods in Yeast Genetics, Cold Spring Harbor Laboratory Press, 130 (1990)
  • a primer or a probe designed based on a nucleotide sequence (preferably, ORF sequence) of the gene encoding a protein having a vicinal diketone or diacetyl-reducing activity the existence of the gene or a sequence specific to the gene is determined in the test yeast genome obtained.
  • the primer or the probe may be designed according to a known technique.
  • Detection of the gene or the specific sequence may be carried out by employing a known technique.
  • a polynucleotide including part or all of the specific sequence or a polynucleotide including a nucleotide sequence complementary to said nucleotide sequence is used as one primer, while a polynucleotide including part or all of the sequence upstream or downstream from this sequence or a polynucleotide including a nucleotide sequence complementary to said nucleotide sequence, is used as another primer to amplify a nucleic acid of the yeast by a PCR method, thereby determining the existence of amplified products and molecular weight of the amplified products.
  • the number of bases of polynucleotide used for a primer is generally 10 base pairs (bp) or more, and preferably 15 to 25 bp. In general, the number of bases between the primers is suitably 300 to 2000 bp.
  • the reaction conditions for PCR are not particularly limited but may be, for example, a denaturation temperature of 90 to 95 0 C, an annealing temperature of 4Q to 6O 0 C, an elongation temperature of 60 to 75°C, and the number of cycle of 10 or more.
  • the resulting reaction product may be separated, for example, by electrophoresis using agarose gel to determine the molecular weight of the amplified product. This method allows prediction and assessment of the capability of producing total vicinal diketones or capability of producing total diacetyl of the yeast as determined by whether the molecular weight of the amplified product is a size that contains the DNA molecule of the specific part.
  • a test yeast is cultured to measure an expression level of the gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ED NO: 3 and encoding a protein having a vicinal diketone or diacetyl-reducing activity to assess the test yeast for its capability of producing total vicinal diketones or capability of producing total diacetyl.
  • the test yeast is cultured and then mRNA or a protein resulting from the gene encoding a protein having a vicinal diketone or diacetyl-reducing activity, is quantified.
  • mRNA or protein may be carried out by employing a known technique.
  • mRNA may be quantified, by Northern hybridization or quantitative RT-PCR, while protein may be quantified, for example, by Western blotting (Current Protocols in Molecular Biology, John Wiley & Sons 1994-2003).
  • test yeasts are cultured and expression levels of the gene of the present invention having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3 are measured to select a test yeast with the gene expression level according to the target capability of producing total vicinal diketones or capability of producing total diacetyl, thereby selecting a yeast favorable for brewing desired alcoholic beverages, hi addition, a reference yeast and a test yeast may be cultured so as to measure and compare the expression level of the gene in each of the yeasts, thereby selecting a favorable test yeast.
  • a reference yeast and one or more test yeasts are cultured and an expression level of the gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ DD NO: 3 and encoding a protein having a vicinal diketone or diacetyl-reducing activity, is measured in each yeast, By selecting a test yeast with the gene expressed higher than that in the reference yeast, a yeast suitable for brewing alcoholic beverages can be selected.
  • test yeasts are cultured and a yeast with a lower capability of producing total vicinal diketones or capability of producing total diacetyl, is selected, thereby selecting a yeast suitable for brewing desired alcoholic beverages.
  • the test yeasts or the reference yeast may be. for example, a yeast introduced with the vector of the invention, a yeast with amplified expression of the gene of the present invention described above, a yeast with amplified expression of the protein of the present invention described above, an artificially mutated yeast or a naturally mutated yeast.
  • the vicinal diketone or diacetyl-reducing activity can be assessed, for example by, a method of Drews, et al. (Drews et al., Mon.
  • the mutation treatment may employ any methods including, for example, physical methods such as ultraviolet irradiation and radiation irradiation, and chemical methods associated with treatments with drugs such as EMS (ethylmethane sulphonate) and N-methyl-N-nitrosoguanidine (see, e.g., Yasuji Oshima Ed., Biochemistry Experiments vol. 39, Yeast Molecular Genetic Experiments, pp. 67-75, JSSP).
  • physical methods such as ultraviolet irradiation and radiation irradiation
  • chemical methods associated with treatments with drugs such as EMS (ethylmethane sulphonate) and N-methyl-N-nitrosoguanidine (see, e.g., Yasuji Oshima Ed., Biochemistry Experiments vol. 39, Yeast Molecular Genetic Experiments, pp. 67-75, JSSP).
  • yeasts used as the reference yeast or the test yeasts include any yeasts that can be used for brewing, for example, brewery yeasts for beer, wine, sake and the like. More specifically, yeasts such as genus Saccharomyces may be used (e.g., S. pastori ⁇ ms, S. cerevisiae, and S. cai'lsbergensis). According to the present invention, a lager brewing yeast, for example, Saccharomyces pasto ⁇ amis W34/70; Saccharomyces carlsbergensis NCYC453 or NCYC456; or Saccharomyces cerevisiae NBRC 1951. NBRC 1952, NBRC 1953 or NBRC 1954 may be used.
  • yeasts such as genus Saccharomyces may be used (e.g., S. pastori ⁇ ms, S. cerevisiae, and S. cai'lsbergensis).
  • a lager brewing yeast for example, Saccharomyces pasto
  • whisk ⁇ ' yeasts such as Saccharomyces cerevisiae NCYC90; wine yeasts such as wine yeasts #1, 3 and 4 from the Brewing Society of Japan; and sake yeasts such as sake yeast #7 and 9 from the Brewing Society of Japan may also be used but not limited thereto.
  • lager brewing yeasts such as Saccharomyces pastoriamts may preferably be used.
  • the reference yeast and the test yeasts may be selected from the above yeasts in any combination.
  • Example 1 Cloning of Gene Encoding Protein Having Vicinal Diketone or Diacetyl-Reducing Activity (non-ScMMFl)
  • primers non-ScMMFl_F SEQ ID NO: 5
  • non-ScMMFl_R SEQ ID NO: 6
  • PCR was carried out using chromosomal DNA of a genome sequencing strain, Saccharomyces pastori ⁇ ms Weihenstephan 34/70 strain (hereinafter sometimes referred to as "W34/70 strain"), as a template to obtain DNA fragments including the full-length gene of non-ScMMFl.
  • W34/70 strain Saccharomyces pastori ⁇ ms Weihenstephan 34/70 strain
  • a beer fermentation test was conducted using a lager brewing yeast, Saccharomyces pastoi ⁇ anus 34/70 strain and then rriRNA extracted from yeast cells during fermentation was analyzed by a yeast DNA microarray.
  • Example 3 Preparation of non-ScMMFl Gene-Highly Expressed Strain
  • the non-ScM0MFl/pCR2.1-TOPO described in Example 1 was digested using the restriction enzymes Sad and Notl so as to prepare a DNA fragment containing the entire length of the protein-encoding region. This fragment was ligated to pYCGPYNot treated with the restriction enzymes Sad and Notl, thereby constructing the non-ScMMFl high expression vector non-ScMMFl /pYCGPYNot.
  • pYCGPYNot is the YCp-type yeast expression vector.
  • the inserted gene is highly expressed by the pyruvate kinase gene PYKl promoter.
  • the geneticin-resistant gene G418 r is included as the selection marker in the yeast, and the ampicillin-resistant gene Amp r is included as Hie selection marker in Escherichia coli.
  • YPD plate culture 1% yeast extract, 2% polypeptone, 2% glucose. 2% agar containing 300 mg/L of geneticin, and designated as non-ScMMFl -highly expressed strain.
  • the parent strain and non-ScMMFl -highly expressed strain obtained in Example 3 are used to carry out fermentation test under the following conditions.
  • the fermentation broth was sampled with time to observe the cell growth (OD660) (Fig.
  • a specific novel gene encoding a protein having a vicinal diketone or diacetyl-reducing ability (ScMMFl gene; SEQ ID NO: 3) from a lager brewing yeast was found, as a result of a search utilizing the comparison database described in Japanese Patent Application Laid-Open No. 2004-283169.
  • primers ScMMF 1_F (SEQ ID NO: 7) and ScMMFl-R (SEQ ID NO: S) were designed to amplify the full-length genes, respectively.
  • PCR was carried out using chromosomal DNA of a genome sequencing strain, Saccharomyces pastoricmus Weihenstephan 34/70 strain, as a template to obtain DNA fragments including the full-length gene of ScMMFl.
  • the thus-obtained ScMMFl gene fragment was inserted into pCR2.1-TOPO vector (manufactured by Invitrogen Corporation) by TA cloning.
  • the nucleotide sequences of non-ScMMFl gene were analyzed according to Sanger's method (F. Sanger, Science. 214: 1215, 1981) to confirm the nucleotide sequence.
  • Example 6 Analysis of Expression of ScMMFl Gene during Beer Fermentation A beer fermentation test was conducted using a lager brewing yeast, Saccharomyces pasto ⁇ anus 34/70 strain and then mRNA extracted from yeast cells during fermentation was analyzed by a yeast DNA microarray.
  • the ScMMF l/pCR2.1 -TOPO described in Example 5 was digested using the restriction enzymes Sad and Notl so as to prepare a DNA fragment containing the entire length of the protein-encoding region. This fragment was ligated to pYCGPYNot treated with the restriction enzymes Sad and Notl, thereby constructing the ScMIvIFl high expression vector non-ScMMFl /pYCGPYNot.
  • pYCGPYNot is the YCp-type yeast expression vector.
  • the inserted gene is highly expressed by the pyruvate kinase gene PYKl promoter.
  • the geneticin-resistant gene G418 r is included as the selection marker in the yeast and the ampicillin-resistant gene Amp r is included as the selection marker in Escherichia coli.
  • Saccharomyces pastew ⁇ anus Weihenstephaner 34/70 was transformed by the method described in
  • the transformant was selected in a YPD plate culture (1 % yeast extract, 2% polypeptone, 2% glucose, 2% agar) containing 300 nig/L ofgeneticin.
  • the parent strain and ScMMFl -highly expressed strain obtained in Example 7 are used to carry out fermentation test under the following conditions.
  • the fermentation broth was sampled with time to observe the cell growth (OD660) (Fig. 10) and extract consumption with time (Fig. 11). Quantification of the total VDKs in the fermentation broth was carried out by reacting VDKs (DA and PD) with hydroxylamine to produce glyoxinie derivatives, then measuring absorbance of complexes formed from the reaction of resultant glyoxime derivatives and divalent ferric ions (Drews et al., Mon. fur Brau., 34, 1966). The precursors ⁇ -acetolactic-acid and ⁇ -acetohydroxybutyric-acid were previously converted by a gas washing method (oxidative decarboxylation method) to DA and PD. respectively, to quantify the total VDKs including them.
  • alcoholic beverages with superior flavor can be readily produced.

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Abstract

The present invention relates to a gene encoding a protein having a vicinal diketone or diacetyl-reducing activity and use thereof, in particular, a brewery yeast for producing alcoholic beverages with superior flavor, alcoholic beverages produced with said yeast, and a method for producing said beverages. More particularly, the present invention relates to a yeast, whose capability of producing vicinal diketones, especially diacetyl, that are responsible for off-flavors in products, is reduced by amplifying expression level of MMF1 gene encoding a protein (Mmflp) having a vicinal diketone or diacetyl-reducing activity, especially the non-ScMMF1 gene or ScMMF1 gene specific to a lager brewing yeast, and to a method for producing alcoholic beverages with said yeast.

Description

DESCRIPTION
GENE ENCODING PROTEIN WITH VICINAL DIKETONE OR DIACETYL-REDUCING
ACTIVITY AND USE THEREOF
TECHNICAL FIELD
The present invention relates to a gene encoding a protein having a vicinal diketone or diacetyl-reducing activity and use thereof, in particular, a brewery yeast for producing alcoholic beverages with superior flavor, alcoholic beverages produced with said yeast, and a method for producing said beverages. More particularly, the present invention relates to a yeast, whose capability of producing vicinal diketone(s), especially diacetyl, that are responsible for off-flavors in products, is reduced by amplifying expression level of MMFl gene encoding a protein (Mmflp) having a vicinal diketone or diacetyl-reducing activity, especially non-ScMMFl gene or ScMMFl gene specific to a lager brewing yeast and to a method for producing alcoholic beverages with said yeast.
BACKGROUND ART
Flavor of Diacetyl, hereinafter also referred to as "DA", is a representative off-flavor in brewed alcoholic beverages such as beer, sake and wine and so on among flavoring substances of alcoholic beverages. DA flavor, which is also referred to as "butter flavor" or "sweaty flavor" in beer, "tsuwari-ka", which means a nauseating flavor, in sake, occurs when vicinal diketone(s), hereinafter also referred to as "VDK", mainly DA, are present above certain threshold levels in products. The threshold level is said to be 0.1 ppm (parts per million) in beer (Journal of the Institute of Brewing. 76, 486 (1979)). VDK in alcoholic beverages can be broadly divided into DA and 2,3-pentanedione, herein after referred to as "PD". DA and PD are formed by non-enzymatic reactions, which yeasts are not involved in, of α-acetolactic-acid and α-acetohydroxybutyric-acid as precursors which are intermediate in biosynthesis of valine and isoleucine, respectively.
According to these information, VDKs (i.e., DA and PD) and their precursors α-acetohydroxy-acids (i.e., α-acetolactic-acid and α-acetohydroxybutyric-acid) are thought to be the compounds which can impart DA flavors to products. Accordingly, breeding of yeasts which steadily reduces these compounds makes manufacturing control of alcoholic beverages easy as well as expands capability of developing new products.
A method for suppressing production of DA by using rice-malt-yeast culture containing low level of pyruvic acid which is a precursor of acetohydroxy-acids in production of sake in, for example, Japanese Patent Application Laid-Open No. 2001-204457. It is also reported that production of VDKs are reduced in valine, leucine and isoleucine auxotrophic yeast in beer production. However, the yeast has not come into practical use since auxotrophic strains tend to show retarded growth/fermentation. Japanese Patent Application Laid-Open NO. 2002-291465 discloses a method obtaining variant strains sensitive to analogues of the branched amino acids described above, and selecting DA low accumulating strains from the variant strains. Genetically engineered yeasts derived from laboratory-designed yeasts whose amount of expression of ELV5 gene is regulated is reported in Journal of American Society of Brewing Chemists, Proceeding, 81-84 (1987), and also genetically engineered yeast whose amount of expression of ILV3 gene is regulated is reported in European Brewery Convention. Proceedings, of the 21st EBC congress, Madrid, 553-560 (1987). The enzymatic activity of the acetohydroxy-acid reductoisomerase encoded by ELV5 gene is increased 5 to 7-fold, and the amount of production of VDKs are reduced to about 40% in the case.
Besides, the enzymatic activity of the dihydroxy-acid dehydratase encoded by ILV3 is increased 5 to 6-fold. On the contrary, no significant reduction of the amount of production of VDKs was observed. However, any influence on practical beer brewing is analyzed in the two reports described above where synthetic media are used. On the other hand. Villa et al. reported in Journal of American Society of Brewing Chemists, 53;49-53 (1995), that plasmid amplification of the gene products of DL V5, ELV3 or tandem DLV5+ILV3 in brewer's yeast resulted in VDK decreases of 70. 40 and 60% respectively, when compared to that of normal brewer's yeast on practical beer brewing.
Also, Dulieu et al. proposed a method converting α-acetolactic-acid, which served as a precursor of DA, rapidly to acetoin using α-acetolactate decarboxylase in European Brewery Convention, Proceedings of the 26th EBC congress, Maastricht, 455-460 (1997). However, α-acetolactate decarboxylase is an enzyme prepared only by utilizing recombinant DNA technology, and thus use of the enzyme is not acceptable due to consumers' negative images in Japan. Genetically engineered yeasts using DNA strands encoding α-acetolactate decarboxylase are reported in both Japanese Patent Application Laid-Open Nos. H2-2654S8 and H07-171.
DISCLOSURE OF INVENTION
Lender the circumstances described above, there were demands for developing a method for producing alcoholic beverages with superior flavor by breeding a yeast with low
VDK-producing ability utilizing a gene encoding a protein capable of reducing the smell of VDKs
(vicinal diketones), especially DA (diacetyl), and the protein. To solve the problems described above, the present inventors made extensive studies. and as a result succeeded in identifying and isolating a gene encoding a protein having a vicinal diketone or diacetyl-reducing activity. Moreover, a yeast in which the obtained gene was transformed and expressed was produced to confirm reduction of the VDK concentration, especially DA concentration, thereby completing the present invention. Thus, the present invention relates to a gene encoding a protein having a vicinal diketone or diacetyl-reducing activity (activity of reducing a vicinal diketone(s) or diacetyl) existing specifically in a lager brewing yeast to a protein encoded by said gene, to a transformed yeast in which the expression of said gene is controlled, to a method for controlling the level of VDKs, especially the level of DA. in a product by using a yeast in which the expression of said gene is controlled. More specifically, the present invention provides the following polynucleotides, a vector comprising said polynucleotide, a transformed yeast introduced with said vector, a method for producing alcoholic beverages by using said transformed yeast, and the like.
( 1 ) A polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising a polynucleotide consisting of the nucleotide sequence ofSEQ ID NO:l;
(b) a polynucleotide comprising a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO:2;
(c) a polynucleotide comprising a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO:2 with one or more amino acids thereof being deleted, substituted, inserted and/or added, and having a vicinal diketone or diacetyl-reducing activity;
(d) a polynucleotide comprising a polynucleotide encoding a protein having an amino acid sequence having 60% or higher identity with the amino acid sequence of SEQ ID NO:2, and having a vicinal diketone or diacetyl-reducing activity;
(e) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO:1 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity; and
(f) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of the polynucleotide encoding the protein of the amino acid sequence of SEQ ID NO:2 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
(2) The polynucleotide of (1) above selected from the group consisting of:
(g) a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO: 2. or encoding an amino acid sequence of SEQ ED NO: 2 wherein 1 to 10 amino acids thereof is deleted, substituted, inserted, and/or added, and wherein said protein has a vicinal diketone or diacetyl-reducing activity;
(h) a polynucleotide encoding a protein having 90% or higher identity with the amino acid sequence of SEQ ID NO: 2, and having a vicinal diketone or diacetyl-reducing activity; and (i) a polynucleotide which hybridizes to SEQ ID NO: 1 or which hybridizes to a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
(3) The polynucleotide of (1) above comprising a polynucleotide consisting of SEQ ID NO: 1. (4) The polynucleotide of (1) above comprising a polynucleotide encoding a protein consisting of SEQ K) NO: 2.
(5) The polynucleotide of any one of (1) to (4) above, wherein the polynucleotide is DNA.
(6) A protein encoded by the polynucleotide of any one of (1) to (5) above. (7) A vector comprising the polynucleotide of any one of ( 1 ) to (5) above.
(8) A vector comprising the polynucleotide selected from the group consisting of:
Q) a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO: 4, or encoding an amino acid sequence of SEQ ID NO: 4 wherein 1 to 10 amino acids thereof is deleted, substituted, inserted, and/or added, and wherein said protein has a vicinal diketone or diacetyl-reducing activity;
(k) a polynucleotide encoding a protein having 90% or higher identity with the amino acid sequence of SEQ ID NO: 4, and having a vicinal diketone or diacetyl-reducing activity; and
(1) a polynucleotide which hybridizes to SEQ K) NO: 3 or which hybridizes to a nucleotide sequence complementary to the nucleotide sequence of SEQ K) NO: 3 under high stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
(8a) The vector of (7) above, which comprises the expression cassette comprising the folio wing components:
(x) a promoter that can be transcribed in a yeast cell; (y) any of the polynucleotides described in (1) to (5) above linked to the promoter in a sense or antisense direction; and
(z) a signal that can function in a yeast with respect to transcription termination and polyadenylation of a RNA molecule.
(9) A yeast, wherein the vector of (7) or (8) above is introduced. (10) The yeast of (9) above, wherein a total vicinal diketone or total diacetyl-producing capability is reduced by introducing the vector of (7) or (8) above.
(11) The yeast of (10) above, wherein a total vicinal diketone or total diacetyl-producing capability is reduced by increasing an expression level of the protein of (6) above. (12) A method for producing an alcoholic beverage comprising culturing the yeast of any one of (9) to (11) above.
(13) The method for producing an alcoholic beverage of (12) above, wherein the brewed alcoholic beverage is a malt beverage.
(14) The method for producing an alcoholic beverage of (12) above, wherein the brewed alcoholic beverage is wine.
(15) An alcoholic beverage produced by the method of any one of (12) to (14 ) above.
(16) A method for assessing a test yeast for its total vicinal diketone or total diacetyl-producing capability, comprising using a primer or a probe designed based on a nucleotide sequence of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ DD NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability.
(16a) A method for selecting a yeast having a low total vicinal diketone or total diacetyl-producing capability by using the method described in (16) above.
(16b) A method -for producing an alcoholic beverage (for example, beer) by using the yeast selected with the method in (16a) above. (17) A method for assessing a test yeast for its total vicinal diketone or total diacetyl-producing capability, comprising: culturing a test yeast; and measuring an expression level of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability.
(17a) A method for selecting a yeast having a low total vicinal diketone or total diacetyl-producing capability, which comprises assessing a test yeast by the method described in (17) above and selecting a yeast having a high expression level of ene encoding a protein having a vicinal diketone or diacetyl-reducing activity.
(17b) A method for producing an alcoholic beverage (for example, beer) by using the yeast selected with the method in (17a) above. (18) A method for selecting a yeast, comprising: culturing test yeasts; quantifying the protein according to (6) or measuring an expression level of a gene having the nucleotide sequence of SEQ ED NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability; and selecting a test yeast having said protein amount or said gene expression level according to a target total vicinal diketone or total diacetyl-producing capability. (18a) A method for selecting a yeast, comprising: culturing test yeasts; measuring a total vicinal diketone or total diacetyl-producing capability; and selecting a test yeast having a target total vicinal diketone or total diacetyl-producing capability.
(19) The method for selecting a yeast according to (18) above, comprising: culturing a reference yeast and test yeasts; measuring an expression level of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability in each yeast; and selecting a test yeast having the gene expressed higher than that in the reference yeast.
(20) The method for selecting a yeast according to (18) above, comprising: culturing a reference yeast and test yeasts; quantifying the protein according to (6) above in each yeast; and selecting a test yeast having said protein for a larger amount than that in the reference yeast.
(21) A method for producing an alcoholic beverage comprising: conducting fermentation for producing an alcoholic beverage using the yeast according to any one of (9) to (11) above or a yeast selected by the method according to any one of (18) to (20) above; and adjusting the total vicinal diketone or total diacetyl-producing capability. According to the method for producing alcoholic beverages of the present invention, because of reduction of the production amount of VDKs, especially DA, which are responsible for off-flavors in products, alcoholic beverages with superior flavor can be readily produced.
BRIEF DESCRIPTION OF DRAWINGS Figure 1 shows the cell growth with time upon beer fermentation test. The horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660).
Figure 2 shows the extract consumption with time upon beer fermentation test. The horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%).
Figure 3 shows the expression behavior of non-ScMMFl gene in yeasts upon beer fermentation test. The horizontal axis represents fermentation time while the vertical axis represents the brightness of detected signal.
Figure 4 shows the cell growth with time upon beer fermentation test using the non-ScMMFl -highly expressed strain. The horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660).
Figure 5 shows the extract consumption with time upon beer fermentation test using the non-ScMMFl -highly expressed strain. The horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%). Figure 6 shows the VDK concentration in the fermentation broth (at the completion of fermentation) during beer fermentation test using the non-ScMMFl -highly expressed strain.
Figure 7 shows the cell growth with time upon beer fermentation test. The horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660).
Figure 8 shows the extract consumption with time upon beer fermentation test. The horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%).
Figure 9 shows the expression behavior of ScMMFl gene in yeasts upon beer fermentation test. The horizontal axis represents fermentation time while the vertical axis represents the brightness of detected signal.
Figure 10 shows the cell growth with time upon beer fermentation test using the ScMN CFl -highly expressed strain. The horizontal axis represents fermentation time while the vertical axis represents optical density at 660 nm (OD660). Figure 11 shows the extract consumption with time upon beer fermentation test using the
ScMMF 1 -highly expressed strain. The horizontal axis represents fermentation time while the vertical axis represents apparent extract concentration (w/w%).
Figure 12 shows the VDK concentration in the fermentation broth (at the completion of fermentation) during beer fermentation test using the ScMMFl -highly expressed strain.
BEST MODES FOR CARRYING OUT THE INVENTION
The present inventors isolated and identified non-ScMMFl gene and ScMMFl gene encoding a protein having a vicinal diketone or diacetyl-reducing activity unique to lager brewing yeast based on the lager brewing yeast genome information mapped according to the method disclosed in Japanese Patent Application Laid-Open No. 2004-283169. These nucleotide sequences of the genes are represented by SEQ ID NO: 1 and SEQ ID NO: 3, respectively. Further, each of an amino acid sequence of a protein encoded by each of these genes is represented by SEQ ID NO: 2 or SEQ ID NO: 4, respectively.
1. Polynucleotide of the invention
First of all, the present invention provides (a) a polynucleotide comprising a polynucleotide of the nucleotide sequence of SEQ ID NO:1 or SEQ ID NO: 3; and (b) a polynucleotide comprising a polynucleotide encoding a protein of the amino acid sequence of SEQ ID NO:2 or SEQ ID NO: 4. The polynucleotide can be DNA or RNA.
The target polynucleotide of the present invention is not limited to the polynucleotide encoding a protein having a vicinal diketone or diacetyl-reducing activity derived from lager brewing yeast and may include other polynucleotides encoding proteins having equivalent functions to said protein. Proteins with equivalent functions include, for example, (c) a protein of an amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 with one or more amino acids thereof being deleted, substituted, inserted and/or added and having a vicinal diketone or diacetyl-reducing activity.
Such proteins include a protein consisting of an amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 with, for example, 1 to 100, 1 to 90, 1 to 80, 1 to 70, 1 to 60, 1 to 50, 1 to 40, 1 to 39, 1 to 38, 1 to 37, 1 to 36, 1 to 35, 1 to 34, 1 to 33, 1 to 32, 1 to 31, 1 to 30, 1 to 29, 1 to 28, 1 to 27, 1 to 26, 1 to 25, 1 to 24, 1 to 23, 1 to 22, 1 to 21, 1 to 20, 1 to 19, 1 to 18, 1 to 17, 1 to 16, 1 to 15, 1 to 14, 1 to 13, 1 to 12, 1 to 11, 1 to 10, 1 to 9, 1 to 8, 1 to 7, 1 to 6 (1 to several amino acids), 1 to 5, 1 to 4, 1 to 3, 1 to 2, or 1 amino acid residues thereof being deleted, substituted, inserted and/or added and having a vicinal diketone or diacetyl-reducing activity. In general, the number of deletions, substitutions, insertions, and/or additions is preferably smaller. In addition, such proteins include (d) a protein having an amino acid sequence with about 60% or higher, about 70% or higher, 71%.or higher, 72% or higher, 73% or higher, 74% or higher, 75% or higher, 76% or higher, 77% or higher, 78% or higher. 79% or higher, 80% or higher, 81% or higher, 82% or higher, 83% or higher, 84% or higher, 85% or higher, 86% or higher, 87% or higher, 88% or higher, 89% or higher, 90% or higher, 91% or higher, 92% or higher, 93% or higher. 94% or higher, 95% or higher, 96% or higher, 97% or higher, 98% or higher, 99% or higher, 99.1% or higher, 99.2% or higher, 99.3% or higher, 99.4% or higher, 99.5% or higher, 99.6% or higher, 99.7% or higher, 99.8% or higher, or 99.9% or higher identity with the amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4, and having a vicinal diketone or diacetyl-reducing activity, In general, the percentage identity is preferably higher.
The vicinal diketone or diacetyl-reducing activity can be assessed, for example by, a method of Drews, et al. (Drews et al., Mon. fur Brau., 34, 1966) wherein total VDK (DA and PD) concentration is measured in fermentation broth and compared. Furthermore, the present invention also contemplates (e) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3 under stringent conditions and which encodes a protein having a vicinal diketone or diacetyl-reducing activity; and (f) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide complementary to a nucleotide sequence of encoding a protein of SEQ ID NO: 2 or SEQ ID NO: 4 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
Herein, "a polynucleotide that hybridizes under stringent conditions" refers to nucleotide sequence, such as a DNA, obtained by a colony hybridization technique, a plaque hybridization technique, a southern hybridization technique or the like using all or part of polynucleotide of a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3 or polynucleotide encoding the amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 as a probe. The hybridization method may be a method described, for example, in Molecular Cloning 3rd Ed., Current Protocols in Molecular Biology, John Wiley & Sons 1987-1997. The term "stringent conditions" as used herein may be any of low stringency conditions, moderate stringency conditions or high stringency conditions. "Low stringency conditions" are, for example, 5 x SSC, 5 x Denhardt's solution, 0.5% SDS, 50% formamide at 32°C. "Moderate stringency conditions" are, for example, 5 x SSC, 5 x Denhardt's solution, 0.5% SDS, 50% formamide at 420C. "High stringency conditions" are, for example, 5 x SSC, 5 x Denhardt's solution, 0.5% SDS, 50% formamide at 5O0C. Under these conditions, a polynucleotide, such as a DNA, with higher homology is expected to' be obtained efficiently at higher temperature, although multiple factors are involved in hybridization stringency including temperature, probe concentration, probe length, ionic strength, time, salt concentration and others, and one skilled in the art may appropriately select these factors to realize similar stringency. When a commercially available kit is used for hybridization, for example, Alkphos
Direct Labeling Reagents (Amersham Pharmacia) may be used. In this case, according to the attached protocol, after incubation with a labeled probe overnight the membrane is washed with a primary wash buffer containing 0.1% (w/v) SDS at 55°C, thereby detecting hybridized polynucleotide, such as DNA. Other polynucleotides that can be hybridized include polynucleotides having about 60% or higher, about 70% or higher. 71% or higher, 72% or higher, 73% or higher, 74% or higher, 75% or higher, 76% or higher, 77% or higher, 78% or higher, 79% or higher, 80% or higher, 81% or higher, 82% or higher, 83% or higher, 84% or higher, 85% or higher, 86% or higher, 87% or higher, 88% or higher, 89% or higher, 90% or higher, 91% or higher, 92% or higher, 93% or higher, 94% or higher, 95% or higher, 96% or higher, 97% or higher, 98% or higher, 99% or higher, 99.1% or higher, 99.2% or higher, 99.3% or higher, 99.4% or higher, 99.5% or higher, 99.6% or higher, 99.7% or higher, 99.8% or higher or 99.9% or higher identity to polynucleotide encoding the amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 as calculated by homology search software, such as FASTA and BLAST using default parameters. Identity between amino acid sequences or nucleotide sequences may be determined using algorithm BLAST by Karlin and Altschul (Proc. Natl. Acad. Sci. USA, 87: 2264-2268, 1990; Proc. Natl. Acad. Sci. USA, 90: 5873, 1993). Programs called BLASTN and BLASTX based on BLAST algorithm have been developed (Altschul SF et al., J. MoI. Biol. 215: 403, 1990). When a nucleotide sequence is sequenced using BLASTN, the parameters are, for example, score = 100 and word length = 12. When an amino acid sequence is sequenced using BLASTX, the parameters are, for example, score = 50 and word length = 3. When BLAST and Gapped BLAST programs are used, default parameters for each of the programs are employed.
2. Protein of the present invention The present invention also provides proteins encoded by any of the polynucleotides (a) to
(1) above. A preferred protein of the present invention comprises an amino acid sequence of SEQ ID NO:2 or SEQ DD NO: 4 with one or several amino acids thereof being deleted, substituted, inserted and/or added, and has a vicinal diketone or diacetyl-reducing activity.
Such protein includes those having an amino acid sequence of SEQ ID NO: 2 or SEQ ID NO: 4 with amino acid residues thereof of the number mentioned above being deleted, substituted, inserted and/or added and having a vicinal diketone or diacetyl-reducing activity. LQ addition, such protein includes those having homology of about 60% or more, preferably about 70% or more, more preferably about 80% or more, further more preferably about 90% or more, or the most preferably about 95% or more as described above with the amino acid sequence of SEQ ED NO: 2 or SEQ ID NO: 4 and having a vicinal diketone or diacetyl-reducing activity.
Such proteins may be obtained by employing site-directed mutation described, for example, in Molecular Cloning 3rd Ed., Current Protocols in Molecular Biology, Nuc. Acids. Res., 10: 6487 (1982), Proc. Natl. Acad. Sci. USA 79: 6409 (1982), Gene 34: 315 (1985), Nuc. Acids. Res.r 13: 4431 (1985), Proc. Natl. Acad. Sci. USA 82: 488 (1985). Deletion, substitution, insertion and/or addition of one or more amino acid residues in an amino acid sequence of the protein of the invention means that one or more amino acid residues are deleted, substituted, inserted and/or added at any one or more positions in the same amino acid sequence. Two or more types of deletion, substitution, insertion and/or addition may occur concurrently. Hereinafter, examples of mutually substitutable amino acid residues are enumerated,
Amino acid residues in the same group are mutually substitutable. The groups are provided below.
Group A: leucine, isoleucine, noiieucine, valine, norvaline, alanine, 2-aminobutanoic acid, methionine, o-niethylserine, t-butylglycine, t-butylalanine, cyclohexylalanine; Group B: asparatic acid, glutamic acid, isoasparatic acid, isoglutamic acid, 2-aminoadipic acid, 2-aminosuberic acid; Group C: asparagine, glutamine; Group D: lysine, arginine, ornithine, 2,4-diaminobutanoic acid, 2,3-diaminopropionic acid; Group E: proline.. 3-hydroxyproline, 4-hydroxyproline; Group F: serine, threonine, homoserine; and Group G: phenylalanine, tyrosine. The protein of the present invention may also be produced by chemical synthesis methods such as Fmoc method (fluorenylmethyloxycarbonyl method) and tBoc method (t-butyloxycarbonyl method). In addition, peptide synthesizers available from, for example, Advanced ChemTech, PerkinElmer, Pharmacia, Protein Technology Instrument, Synthecell-Vega, PerSeptive, Shimazu Corp. can also be used for chemical synthesis.
3. Vector of the invention and yeast transformed with the vector
The present invention then provides a vector comprising the polynucleotide described above. The vector of the present invention is directed to a vector including any of the polynucleotides (such as DNA) described in (a) to (1) above. Generally, the vector of the present invention comprises an expression cassette including as components (x) a promoter that can transcribe in a yeast cell; (y) a polynucleotide (such as DNA) described in any of (a) to (1) above that is linked to the promoter in sense or antisense direction; and (z) a signal that functions in the yeast with respect to transcription termination and polyadenylation of RNA molecule.
A vector introduced in the yeast may be any of a multicopy type (YEp type), a single copy type (YCp type), or a chromosome integration type (YIp type). For example, YEp24 (J. R. Broach et al., Experimental Manipulation of Gene Expression, Academic Press, New York, 83, 1983) is known as a YEp type vector, YCpSO (M. D. Rose et al., Gene 60: 237, 1987) is known as a YCp type vector, and YIp5 (K. Struhl et al., Proc. Natl. Acad. Sci. USA, 76: 1035, 1979) is known as a YIp type vector, all of which are readily available.
Promoters/terminators for adjusting gene expression in yeast may be in any combination as long as they function in the brewery yeast and they have no influence on the concentration of constituents such as amino acid and extract in fermentation broth. For example, a promoter of glyceraldehydes 3-phosphate dehydrogenase gene (TDH3), or a promoter of 3-phosphoglycerate kinase gene (PGKl) may be used. These genes have previously been cloned, described in detail, for example, in M. F. Tuite et al., EMBO J., 1, 603 (1982), and are readily available by known methods.
Since an auxotrophy marker cannot be used as a selective marker upon transformation for a brewery yeast for example, a geneticin-resistant gene (G418r), a copper-resistant gene (CUPl) (Marin et al., Proc. Natl. Acad. Sci. USA, 81, 337 1984) or a cerulenin-resistant gene (fas2m, PDR4) (Junji Inokoshi et al.. Biochemistry, 64, 660, 1992; and Hussain et al.. Gene, 101: 149, 1991 , respectively) may be used. A vector constructed as described above is introduced into a host yeast. Examples of the host yeast include any yeast that can be used for brewing, for example, brewery yeasts for beer, wine and sake. Specifically, yeasts such as genus Sacchai'omyces may be used. According to the present invention, a lager brewing yeast, for example, Saccharomyces pastoriωms W34/70, Saccharomyces carlsbergensis NCYC453 or NCYC456, or Saccharoiψces cerevisiae NBRC 1951, NBRC1952, NBRCl 953 or NBRC1954 may be used. In addition, wine yeasts such as wine yeasts #1, 3 and 4 from the Brewing Society of Japan, and sake yeasts such as sake yeast #7 and 9 from the Brewing Society of Japan may also be used but not limited thereto. In the present invention, lager brewing yeasts such as Saccharomyces pastorianus may be used preferably.
A yeast transformation method may be a generally used known method. For example, methods that can be used include but not limited to an electroporation method (Meth. Enzym., 194: 182 (1990)), a spheroplast method (Proc. Natl. Acad. Sci. USA, 75: 1929(1978)). a lithium acetate method (J. Bacteriology. 153: 163 (1983)), and methods described in Proc. Natl. Acad. Sci. USA.. 75: 1929 (1978), Methods in Yeast Genetics, 2000 Edition: A Cold Spring Harbor Laboratory Course Manual.
More specifically, a host yeast is cultured in a standard yeast nutrition medium (e.g., YEPD medium (Genetic Engineering. Vol. 1, Plenum Press, New York, 117(1979)), etc.) such that OD600 nm will be 1 to 6. This culture yeast is collected by centrifugation, washed and pre-treated with alkali ion metal ion, preferably lithium ion at a concentration of about 1 to 2 M. After the cell is left to stand at about 3O0C for about 60 minutes, it is left to stand with DNA to be introduced (about 1 to 20 μg) at about 3O0C for about another 60 minutes. Polyethyleneglycol, preferably about 4.000 Dalton of polyethyleneglycol, is added to a final concentration of about 20% to 50%. After leaving at about 3O0C for about 30 minutes, the cell is heated at about 42°C for about 5 minutes. Preferably, this cell suspension is washed with a standard yeast nutrition medium, added to a predetermined amount of fresh standard yeast nutrition medium and left to stand at about 3O0C for about 60 minutes. Thereafter, it is seeded to a standard agar medium containing an antibiotic or the like as a selective marker to obtain a transformant.
Other general cloning techniques may be found, for example, in Molecular Cloning 3rd Ed., and Methods in Yeast Genetics, A Laboratory Manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY).
4. Method of producing alcoholic beverages according to the present invention and alcoholic beverages produced by the method The vector of the present invention described above is introduced into a yeast suitable for brewing a target alcoholic product. This yeast can be used to reduce the level of VDKs, especially DA, of desired alcoholic beverages, and produce alcoholic beverages having enhanced flavor. In addition, yeasts to be selected by the yeast assessment method of the present invention can also be used. The target alcoholic beverages include, for example, but not limited to beer, sparkling liquor (happoushii) such as a beer-taste beverage, wine, whisky, sake and the like.
In order to produce these alcoholic beverages, a known technique can be used except that a brewery yeast obtained according to the present invention is used in thej»lace of a parent strain. Since materials, manufacturing equipment, manufacturing control and the like may be exactly the same as the conventional ones, there is no need of increasing the cost for producing alcoholic beverages with an decreased level of VDKs, especially DA. Thus, according to the present invention, alcoholic beverages with enhanced flavor can be produced using the existing facility without increasing the cost.
5. Yeast assessment method of the invention The present invention relates to a method for assessing a test yeast for its capability of producing total vicinal diketones or capability of producing total diacetyl by using a primer or a probe designed based on a nucleotide sequence of a gene having the nucleotide sequence of SEQ ID NO:1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing activity. General techniques for such assessment method is known and is described in, for example, WO01/040514, Japanese Laid-Open Patent Application No. 8-205900 or the like. This assessment method is described in below.
First, genome of a test yeast is prepared. For this preparation, any known method such as Hereford method or potassium acetate method may be used (e.g.. Methods in Yeast Genetics, Cold Spring Harbor Laboratory Press, 130 (1990)). Using a primer or a probe designed based on a nucleotide sequence (preferably, ORF sequence) of the gene encoding a protein having a vicinal diketone or diacetyl-reducing activity, the existence of the gene or a sequence specific to the gene is determined in the test yeast genome obtained. The primer or the probe may be designed according to a known technique.
Detection of the gene or the specific sequence may be carried out by employing a known technique. For example, a polynucleotide including part or all of the specific sequence or a polynucleotide including a nucleotide sequence complementary to said nucleotide sequence is used as one primer, while a polynucleotide including part or all of the sequence upstream or downstream from this sequence or a polynucleotide including a nucleotide sequence complementary to said nucleotide sequence, is used as another primer to amplify a nucleic acid of the yeast by a PCR method, thereby determining the existence of amplified products and molecular weight of the amplified products. The number of bases of polynucleotide used for a primer is generally 10 base pairs (bp) or more, and preferably 15 to 25 bp. In general, the number of bases between the primers is suitably 300 to 2000 bp.
The reaction conditions for PCR are not particularly limited but may be, for example, a denaturation temperature of 90 to 950C, an annealing temperature of 4Q to 6O0C, an elongation temperature of 60 to 75°C, and the number of cycle of 10 or more. The resulting reaction product may be separated, for example, by electrophoresis using agarose gel to determine the molecular weight of the amplified product. This method allows prediction and assessment of the capability of producing total vicinal diketones or capability of producing total diacetyl of the yeast as determined by whether the molecular weight of the amplified product is a size that contains the DNA molecule of the specific part. In addition, by analyzing the nucleotide sequence of the amplified product, the capability may be predicted and/or assessed more precisely. Moreover, in the present invention, a test yeast is cultured to measure an expression level of the gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ED NO: 3 and encoding a protein having a vicinal diketone or diacetyl-reducing activity to assess the test yeast for its capability of producing total vicinal diketones or capability of producing total diacetyl. In this case, the test yeast is cultured and then mRNA or a protein resulting from the gene encoding a protein having a vicinal diketone or diacetyl-reducing activity, is quantified. The quantification of mRNA or protein may be carried out by employing a known technique. For example, mRNA may be quantified, by Northern hybridization or quantitative RT-PCR, while protein may be quantified, for example, by Western blotting (Current Protocols in Molecular Biology, John Wiley & Sons 1994-2003). Furthermore, test yeasts are cultured and expression levels of the gene of the present invention having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3 are measured to select a test yeast with the gene expression level according to the target capability of producing total vicinal diketones or capability of producing total diacetyl, thereby selecting a yeast favorable for brewing desired alcoholic beverages, hi addition, a reference yeast and a test yeast may be cultured so as to measure and compare the expression level of the gene in each of the yeasts, thereby selecting a favorable test yeast. More specifically, for example, a reference yeast and one or more test yeasts are cultured and an expression level of the gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ DD NO: 3 and encoding a protein having a vicinal diketone or diacetyl-reducing activity, is measured in each yeast, By selecting a test yeast with the gene expressed higher than that in the reference yeast, a yeast suitable for brewing alcoholic beverages can be selected.
Alternatively, test yeasts are cultured and a yeast with a lower capability of producing total vicinal diketones or capability of producing total diacetyl, is selected, thereby selecting a yeast suitable for brewing desired alcoholic beverages. In these cases, the test yeasts or the reference yeast may be. for example, a yeast introduced with the vector of the invention, a yeast with amplified expression of the gene of the present invention described above, a yeast with amplified expression of the protein of the present invention described above, an artificially mutated yeast or a naturally mutated yeast. The vicinal diketone or diacetyl-reducing activity can be assessed, for example by, a method of Drews, et al. (Drews et al., Mon. fur Brau., 34, 1966) wherein total VDK (DA and PD) concentration is measured in fermentation broth and compared. The mutation treatment may employ any methods including, for example, physical methods such as ultraviolet irradiation and radiation irradiation, and chemical methods associated with treatments with drugs such as EMS (ethylmethane sulphonate) and N-methyl-N-nitrosoguanidine (see, e.g., Yasuji Oshima Ed., Biochemistry Experiments vol. 39, Yeast Molecular Genetic Experiments, pp. 67-75, JSSP).
In addition, examples of yeasts used as the reference yeast or the test yeasts include any yeasts that can be used for brewing, for example, brewery yeasts for beer, wine, sake and the like. More specifically, yeasts such as genus Saccharomyces may be used (e.g., S. pastoriωms, S. cerevisiae, and S. cai'lsbergensis). According to the present invention, a lager brewing yeast, for example, Saccharomyces pastoήamis W34/70; Saccharomyces carlsbergensis NCYC453 or NCYC456; or Saccharomyces cerevisiae NBRC 1951. NBRC 1952, NBRC 1953 or NBRC 1954 may be used. Further, whisk}' yeasts such as Saccharomyces cerevisiae NCYC90; wine yeasts such as wine yeasts #1, 3 and 4 from the Brewing Society of Japan; and sake yeasts such as sake yeast #7 and 9 from the Brewing Society of Japan may also be used but not limited thereto. In the present invention, lager brewing yeasts such as Saccharomyces pastoriamts may preferably be used. The reference yeast and the test yeasts may be selected from the above yeasts in any combination.
EXAMPLES Hereinafter, the present invention will be described in more detail with reference to working examples. The present invention, however, is not limited to the examples described below.
Example 1; Cloning of Gene Encoding Protein Having Vicinal Diketone or Diacetyl-Reducing Activity (non-ScMMFl) A specific novel gene encoding a vicinal diketone or diacetyl-reducing abilitiy (non-ScMMFl gene; SEQ ED NO: 1) from a lager brewing yeast was found, as a result of a search utilizing the comparison database described in Japanese Patent Application Laid-Open No. 2004-283169. Based on the acquired nucleotide sequence information, primers non-ScMMFl_F (SEQ ID NO: 5) and non-ScMMFl_R (SEQ ID NO: 6) were designed to amplify the full-length genes, respectively. PCR was carried out using chromosomal DNA of a genome sequencing strain, Saccharomyces pastoriωms Weihenstephan 34/70 strain (hereinafter sometimes referred to as "W34/70 strain"), as a template to obtain DNA fragments including the full-length gene of non-ScMMFl. The thus-obtained non-ScMMFl gene fragment was inserted into pCR2.1-TOPO vector
(manufactured by Invitrogen Corporation) by TA cloning. The nucleotide sequences of non-ScMMFl gene were analyzed according to Sanger's method (F. Sanger, Science. 214: 1215, 1981) to confirm the nucleotide sequence.
Example 2: Analysis of Expression of non-ScMMFl Gene during Beer Fermentation
A beer fermentation test was conducted using a lager brewing yeast, Saccharomyces pastoiϊanus 34/70 strain and then rriRNA extracted from yeast cells during fermentation was analyzed by a yeast DNA microarray.
Wort extract concentration 12.69%
Wort content 70 L
Wort dissolved oxygen concentration 8.6 ppm
Fermentation temperature 15 °C
Yeast pitching rate 12.8χlO6 cells/mL
Sampling of fermentation liquid was performed with time, and variation with time of yeast growth amount ( Fig. 1 ) and apparent extract concentration (Fig. 2) was observed. Simultaneously, yeast cells were sampled to prepare mRNA, and the prepared mRNA was labeled with biotin and was hybridized to a beer yeast DNA microarray. The signal was detected using GCOS; GeneChip Operating Software 1.0 (manufactured by Affymetrix Co.). Expression pattern of non-ScMMFl gene is shown in Figure 3. As a result, it was confirmed that non-ScMMFl gene was expressed in the general beer fermentation.
Example 3: Preparation of non-ScMMFl Gene-Highly Expressed Strain The non-ScM0MFl/pCR2.1-TOPO described in Example 1 was digested using the restriction enzymes Sad and Notl so as to prepare a DNA fragment containing the entire length of the protein-encoding region. This fragment was ligated to pYCGPYNot treated with the restriction enzymes Sad and Notl, thereby constructing the non-ScMMFl high expression vector non-ScMMFl /pYCGPYNot. pYCGPYNot is the YCp-type yeast expression vector. The inserted gene is highly expressed by the pyruvate kinase gene PYKl promoter. The geneticin-resistant gene G418r is included as the selection marker in the yeast, and the ampicillin-resistant gene Ampr is included as Hie selection marker in Escherichia coli.
Using the non-ScMMFl high expression vector prepared by the above method, the strain Saccharomyces pastewianus Weihenstephaner 34/70 was transformed by the method described in
Japanese Patent Application Laid-open No. H7-303475. The transformant was selected in a
YPD plate culture (1% yeast extract, 2% polypeptone, 2% glucose. 2% agar) containing 300 mg/L of geneticin, and designated as non-ScMMFl -highly expressed strain.
Example 4: Analysis of Amount of VDKs Produced during Beer Fermentation
The parent strain and non-ScMMFl -highly expressed strain obtained in Example 3, are used to carry out fermentation test under the following conditions.
Wort extract concentration 11.85% Wort content 2 L
Wort dissolved oxygen concentration 8 ppm
Fermentation temperature 15 °C, constant
Yeast pitching rate 5 g wet yeast fungal body/L Wort
The fermentation broth was sampled with time to observe the cell growth (OD660) (Fig.
4) and extract consumption with time (Fig. 5). Quantification of the total VDKs in the fermentation broth was carried out by reacting VDKs (DA and PD) with hydroxylamine to produce glyoxime derivatives, then measuring absorbance of complexes formed from the reaction of resultant glyoxime derivatives and divalent ferric ions (Drews et al., Mon. fur Brau., 34, 1966). The precursors α-acetolactic-acid and α-acetohydiOxybutyric-acid were previously converted by a gas washing method (oxidative decarboxylation method) to DA and PD. respectively, to quantify the total VDKs including them.
As shown in Fig. 6; use of the non-ScMMFl -highly expressed strain reduced the total VDK concentration by about 90%, thereby the concentration being much lower than the threshold level in beer of O.lppm. In addition, significant differences were not observed between the parent strain and the highly expressed strain in cell growth and extract consumption in this testing.
Example 5: Cloning of Gene Encoding Protein Having Vicinal Diketone or Diacetyl-Reducing Activity (SeMMFl)
A specific novel gene encoding a protein having a vicinal diketone or diacetyl-reducing ability (ScMMFl gene; SEQ ID NO: 3) from a lager brewing yeast was found, as a result of a search utilizing the comparison database described in Japanese Patent Application Laid-Open No. 2004-283169. Based on the acquired nucleotide sequence information, primers ScMMF 1_F (SEQ ID NO: 7) and ScMMFl-R (SEQ ID NO: S) were designed to amplify the full-length genes, respectively. PCR was carried out using chromosomal DNA of a genome sequencing strain, Saccharomyces pastoricmus Weihenstephan 34/70 strain, as a template to obtain DNA fragments including the full-length gene of ScMMFl.
The thus-obtained ScMMFl gene fragment was inserted into pCR2.1-TOPO vector (manufactured by Invitrogen Corporation) by TA cloning. The nucleotide sequences of non-ScMMFl gene were analyzed according to Sanger's method (F. Sanger, Science. 214: 1215, 1981) to confirm the nucleotide sequence.
Example 6: Analysis of Expression of ScMMFl Gene during Beer Fermentation A beer fermentation test was conducted using a lager brewing yeast, Saccharomyces pastoήanus 34/70 strain and then mRNA extracted from yeast cells during fermentation was analyzed by a yeast DNA microarray.
Wort extract concentration 12.69% Wort content 70 L
Wort dissolved oxygen concentration 8.6 ppm
Fermentation temperature 150C
Yeast pitching rate 12.8x106 cells/mL
Sampling of fermentation liquid was performed with time, and variation with time of yeast growth amount ( Fig. 7 ) and apparent extract concentration (Fig. 8) was observed. Simultaneously, yeast cells were sampled to prepare mRNA, and the prepared mRNA was labeled with biotin and was hybridized to a beer yeast DNA microarray. The signal was detected using GCOS; GeneChip Operating Software 1.0 (manufactured by Affymetrix Co.). Expression pattern of non-ScMMFl gene is shown in Figure 9. As a result it was confirmed that ScMMFl gene was expressed in the general beer fermentation.
Example 7: Preparation of ScMMFl-Highly Expressed Strain
The ScMMF l/pCR2.1 -TOPO described in Example 5 was digested using the restriction enzymes Sad and Notl so as to prepare a DNA fragment containing the entire length of the protein-encoding region. This fragment was ligated to pYCGPYNot treated with the restriction enzymes Sad and Notl, thereby constructing the ScMIvIFl high expression vector non-ScMMFl /pYCGPYNot. pYCGPYNot is the YCp-type yeast expression vector. The inserted gene is highly expressed by the pyruvate kinase gene PYKl promoter. The geneticin-resistant gene G418r is included as the selection marker in the yeast and the ampicillin-resistant gene Ampr is included as the selection marker in Escherichia coli.
Using the ScMMFl high expression vector prepared by the above method, the strain
Saccharomyces pastewϊanus Weihenstephaner 34/70 was transformed by the method described in
Japanese Patent Application Laid-open No. H7-303475. The transformant was selected in a YPD plate culture (1 % yeast extract, 2% polypeptone, 2% glucose, 2% agar) containing 300 nig/L ofgeneticin.
Example 8: Analysis of Amount of VDKs Produced during Beer Fermentation
The parent strain and ScMMFl -highly expressed strain obtained in Example 7, are used to carry out fermentation test under the following conditions.
Wort extract concentration 11.85%
Wort content 2 L
Wort dissolved oxygen concentration 8 ppm Fermentation temperature 150C, constant
Yeast pitching rate 5 g wet yeast fungal body/L Wort
The fermentation broth was sampled with time to observe the cell growth (OD660) (Fig. 10) and extract consumption with time (Fig. 11). Quantification of the total VDKs in the fermentation broth was carried out by reacting VDKs (DA and PD) with hydroxylamine to produce glyoxinie derivatives, then measuring absorbance of complexes formed from the reaction of resultant glyoxime derivatives and divalent ferric ions (Drews et al., Mon. fur Brau., 34, 1966). The precursors α-acetolactic-acid and α-acetohydroxybutyric-acid were previously converted by a gas washing method (oxidative decarboxylation method) to DA and PD. respectively, to quantify the total VDKs including them.
As shown in Fig. 12, use of the ScMMFl -highly expressed strain reduced the total VDK concentration by about 65%, thereby the concentration being much lower than the threshold level in beer of O.lppm. In addition, significant differences were not observed between the parent strain and the highly expressed strain in cell growth and extract consumption in this testing.
INDUSTRIAL APPLICABILITY
According to the method for producing alcoholic beverages of the present invention, because of reduction of the production amount of VDKs, especially DA, which are responsible for off-flavors in products, alcoholic beverages with superior flavor can be readily produced.

Claims

1. A polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising a polynucleotide consisting of the nucleotide sequence ofSEQ E) NO:l;
(b) a polynucleotide comprising a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO:2;
(c) a polynucleotide comprising a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO:2 with one or more amino acids thereof being deleted, substituted, inserted and/or added, and having an vicinal diketone or diacetyl-reducing activity;
(d) a polynucleotide comprising a polynucleotide encoding a protein having an amino acid sequence having 60% or higher identity with the amino acid sequence of SEQ ID NO:2, and having a vicinal diketone or diacetyl-reducing activity;
(e) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity; and
(f) a polynucleotide comprising a polynucleotide which hybridizes to a polynucleotide consisting of a nucleotide sequence complementary to the nucleotide sequence of the polynucleotide encoding the protein of the amino acid sequence of SEQ ID NO:2 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
2. The polynucleotide of Claim 1 selected from the group consisting of:
(g) a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO: 2, or encoding an amino acid sequence of SEQ ID NO: 2 wherein 1 to 10 amino acids thereof is deleted, substituted, inserted, and/or added, and wherein said protein has a vicinal diketone or diacetyl-reducing activity;
(h) a polynucleotide encoding a protein having 90% or higher identity with the amino acid sequence of SEQ ID NO: 2, and having a vicinal diketone or diacetyl-reducing activity; and (i) a polynucleotide which hybridizes to SEQ ID NO: 1 or which hybridizes to a nucleotide sequence complementary to the nucleotide sequence of SEQ ID NO: 1 under stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
3. The polynucleotide of Claim 1 comprising a polynucleotide consisting of SEQ ID NO: 1.
4. The polynucleotide of Claim 1 comprising a polynucleotide encoding a protein consisting of SEQ DD NO: 2.
5. The polynucleotide of any one of Claims 1 to 4, wherein the polynucleotide is DNA.
6. A protein encoded by the polynucleotide of any one of Claims 1 to 5.
7. A vector comprising the polynucleotide of any one of Claims 1 to 5.
8. A vector comprising the polynucleotide selected from the group consisting of:
(j) a polynucleotide encoding a protein consisting of the amino acid sequence of SEQ ID NO: 4, or encoding an amino acid sequence of SEQ DD NO: 4 wherein 1 to 10 amino acids thereof is deleted, substituted, inserted, and/or added, and wherein said protein has a vicinal diketone or diacetyl-reducing activity; (k) a polynucleotide encoding a protein having 90% or higher identity with the amino acid sequence of SEQ DD NO: 4, and having a vicinal diketone or diacetyl-reducing activity; and
(1) a polynucleotide which hybridizes to SEQ ED NO: 3 or which hybridizes to a nucleotide sequence complementary to the nucleotide sequence of SEQ DD NO: 3 under high stringent conditions, and which encodes a protein having a vicinal diketone or diacetyl-reducing activity.
9. A yeast, wherein the vector of of Claims 7 or 8 is introduced.
10. The yeast of Claim 9, wherein a vicinal diketone or diacetyl-reducing ability is reduced by introducing the vector of Claim 7 or 8.
11. The yeast of Claim 10, wherein a vicinal diketone or diacetyl-reducing ability is reduced by increasing an expression level of the protein of Claim 6.
12. A method for producing an alcoholic beverage comprising culturing the yeast of any one of Claims 9 to 11.
13. The method for producing an alcoholic beverage of Claim 12, wherein the brewed alcoholic beverage is a malt beverage.
14. The method for producing an alcoholic beverage of Claim 12, wherein the brewed
Figure imgf000025_0001
is wine.
15. An alcoholic beverage produced by the method of any one of Claims 12 to 14.
16. A method for assessing a test yeast for its total vicinal diketone or total diacetyl-producing capability, comprising using a primer or a probe designed based on a nucleotide sequence of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability.
17. A method for assessing a test yeast for its total vicinal diketone or total diacetyl-produchig capability, comprising: culturing a test yeast; and measuring an expression level of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability.
18. A method for selecting a yeast, comprising: culturing test yeasts; quantifying the protein according to Claim 6 or measuring an expression level of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability; and selecting a test yeast having said protein amount or said gene expression level according to a target total vicinal diketone or total diacetyl-producing capability.
19. The method for selecting a yeast according to Claim 18. comprising: culturing a reference yeast and test yeasts; measuring an expression level of a gene having the nucleotide sequence of SEQ ID NO: 1 or SEQ ID NO: 3, and encoding a protein having a vicinal diketone or diacetyl-reducing ability in each yeast; and selecting a test yeast having the gene expressed higher than that in the reference yeast.
20. The method for selecting a yeast according to Claim 18, comprising: culturing a reference yeast and test yeasts; quantifying the protein according to Claim 6 in each yeast; and selecting a test yeast having said protein for a larger amount than that in the reference yeast.
21. A method for producing an alcoholic beverage comprising: conducting fermentation for producing an alcoholic beverage using the yeast according to any one of Claims 9 to 11 or a yeast selected by the method according to any one of Claims 18 to 20; and adjusting the total vicinal diketone or total diacetyl-producing capability.
PCT/JP2006/323865 2006-02-24 2006-11-21 Gene encoding protein with vicinal diketone or diacetyl-reducing activity and use thereof WO2007097088A1 (en)

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AU2006338867A1 (en) 2007-08-30
AU2006338867B2 (en) 2010-04-01
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